BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (898 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] gi|254039868|gb|ACT56664.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 898 Score = 985 bits (2545), Expect = 0.0, Method: Composition-based stats. Identities = 898/898 (100%), Positives = 898/898 (100%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA Sbjct: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL Sbjct: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG Sbjct: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK Sbjct: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV Sbjct: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK Sbjct: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ Sbjct: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP Sbjct: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR Sbjct: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI Sbjct: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI Sbjct: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI Sbjct: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ Sbjct: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI Sbjct: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK Sbjct: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 >gi|15965551|ref|NP_385904.1| alanyl-tRNA synthetase [Sinorhizobium meliloti 1021] gi|307302671|ref|ZP_07582427.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C] gi|307318519|ref|ZP_07597953.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83] gi|7404473|sp|P27866|SYA_RHIME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15074732|emb|CAC46377.1| Alanyl-tRNA ligase [Sinorhizobium meliloti 1021] gi|306895859|gb|EFN26611.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83] gi|306903035|gb|EFN33626.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C] Length = 887 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 500/909 (55%), Positives = 659/909 (72%), Gaps = 37/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE+ TG+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L + + NG+ AFKLYDT+G PLD+ QD L A+G G+D +F Sbjct: 361 KTLERGLNLLAEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKG-IGVDTDAFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF L++K+GAT F+GYD Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFELRDKHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ AIV+ G +VE A G+ V++V +QTPFY E+GGQ+GDTG + Sbjct: 462 -----TESAEGVILAIVKDGAVVESAAKGENVQLVLNQTPFYGESGGQVGDTGVITTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L +TD QK+ EG+FVH+ VE G ++T + LT+D+ R +L NHSATHLLH AL Sbjct: 517 KLTVTDTQKRGEGLFVHYCTVEEGSVKTGEAAALTVDHARRARLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+II QN PVVTR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIIVQNTPVVTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ +VSES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLRGSKAGKPYSVELCGGTHVSATGDIGLVRVVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR++L QDE++K+LA+ LKV +V+GRVE + +E RKL+ Sbjct: 697 AVGAGVRRVEALTGEAARAYLGEQDERVKTLAAALKVQPADVLGRVEALLDERRKLEREL 756 Query: 775 AKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + + I V F+ ++S V+ K+LKS+ D +K + SG++ Sbjct: 757 TEAKKKLALAGDGQNGSGDAARDIGGVRFLGRVVSGVEPKDLKSLADDGKKSLGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG+S + KAS ++ VT+DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+G +A + Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGRAAE 876 Query: 888 AIAGVASFL 896 AI VA L Sbjct: 877 AIEAVAGAL 885 >gi|288940831|ref|YP_003443071.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180] gi|288896203|gb|ADC62039.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180] Length = 867 Score = 946 bits (2444), Expect = 0.0, Method: Composition-based stats. Identities = 389/902 (43%), Positives = 540/902 (59%), Gaps = 46/902 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + +R +FL++F++ HE + SS LIP NDPTL+FTN+GMV FK+ F G+E+ Sbjct: 1 MTTSAELRASFLDYFEQRQHERVASSPLIPANDPTLLFTNAGMVQFKDAFLGRERRASNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT+ L Sbjct: 61 AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWDYLTRVLAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 RL++TV++ED+EA +W K G+ + R DNFWSM +TGPCGPCSEIF+D Sbjct: 121 PPERLWVTVFEEDDEAAGIWLKEIGVDPQRFSRCGAKDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+RY+EIWNLVFMQF + LP+ S+DTGMGLER+A V+Q Sbjct: 181 PAIPGGPPGSPDEDGDRYVEIWNLVFMQFNRDADGNMTPLPRPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+HLI+A+ Q TG + RVI DH+RS++FLI DG+ P NEGRGY Sbjct: 241 VHSNYEIDLFRHLIEAAAQATGCTDLA--DKSLRVIADHIRSTAFLITDGVTPGNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA+ + LG + P L+ L EMG AYPEL ++ +E ++ E+ERF Sbjct: 299 VLRRIMRRAIRHGYRLGCSTPFFHTLVEPLAREMGDAYPELRASQSHVERLVKLEEERFA 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+ G+ LLD ++ L D+I G+ FKLYDT+G P+D+ DI RGL +D+ F Sbjct: 359 ETLEHGMRLLDEAIADLSGDQI-PGETVFKLYDTYGFPVDLTADIARERGLT-LDVAGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+E Q+ RARA S + T + + G T F GYD ++ Sbjct: 417 QAMERQKERARAASQFGSAQTLD------IQIQGETDFCGYDRVQ--------------- 455 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + A+ + GE + +G++ V+ D++PFY E+GGQ+GD G + Sbjct: 456 --------EEATIVALYRGGESCDALEAGEEGLVILDRSPFYGESGGQVGDRGWLNTETA 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R + D QKK +G+ VH VE G L + +D RR ++NHSATHLLH AL Sbjct: 508 RFGVQDTQKKGDGVLVHVGRVEEGALTVGDRVDARVDADRRRATALNHSATHLLHAALRE 567 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + P+ LRFD +H +P++ +L +IE VN + N V TRIM+ EDA Sbjct: 568 VLGPHVQQKGSLVGPERLRFDFSHFEPVSREQLLTIERMVNREVRANHLVETRIMSLEDA 627 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 ASGA AL G KY D+VRV+ + G S+ LCGGTHV + G+I L+ IVSE+ I AG Sbjct: 628 KASGAMALFGEKYADQVRVLRM-----GEFSTELCGGTHVKAVGDIGLIKIVSETGIAAG 682 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEAITG A + +E+L LA LK + +V RV ++ + R+L+ + K Sbjct: 683 VRRIEAITGASALEWVEADEERLLRLAGLLKGGREDVDERVTQLIDRARRLEKEIEQLKA 742 Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + I + ++ + D K L+ +D L+ K+ S +++L + Sbjct: 743 KAASSAGQDLAAQAIDIQGIKTLAARLDGADPKSLRVTLDQLKDKLGSAVVVLA-TESDG 801 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S++ VT+DL DR A DL R A+ + GG GGGRP MAQ+GG + A+ V Sbjct: 802 KVSLVAGVTKDLTDRLKAGDLIREVAEKV-GGKGGGRPDMAQAGGNDPAGLPAALELVPG 860 Query: 895 FL 896 ++ Sbjct: 861 WV 862 >gi|94309776|ref|YP_582986.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34] gi|93353628|gb|ABF07717.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34] Length = 884 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 541/910 (59%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 11 MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 71 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 130 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW MA+TGPCGPCSE Sbjct: 131 ADKLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSE 190 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 191 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERI 250 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+ + + T + N + +VI DH+R+ SFLI DG++P Sbjct: 251 AAVLQHVHSNYEIDLFQALIKGAGRETHIAD--LNQNSLKVIADHIRACSFLIVDGVIPG 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L +MG AYPEL +A+ + E L++ Sbjct: 309 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKA 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD ++ L ++L+G++AFKL+DT G PLD+ QD+ + + Sbjct: 369 EEERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT 428 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GYD L Sbjct: 429 -VDEAAFDAAMTRQREQARAAGKFKMAAG-------LEYSGEKTVFHGYDALSMDGV--- 477 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ G V+ GQ VV D TPFYAE+GGQ+GD Sbjct: 478 -------------------RVTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQ 518 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + + D K +F H + G L+ ++ +D R + NHSATH Sbjct: 519 GTLVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATH 578 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + PD RFD +H+ P+T A+++ IE+ VN I N P V Sbjct: 579 LMHKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVA 638 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++M +DA+ SGA AL G KY D VRV+S+ S LCGGTHV+ TG+I L IV Sbjct: 639 QVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVTRTGDIGLFKIV 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E+ + AGIRR+EAITG A +L D +L A+ L+ +V R+ ++ ++ R L+ Sbjct: 693 VEAGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALE 752 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K K +L + + ++ + D K L+ MD L+ K+QS I+ Sbjct: 753 KELEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 812 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 813 LAAVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 870 Query: 887 QAIAGVASFL 896 +A+AGV ++ Sbjct: 871 KALAGVTEWV 880 >gi|205830252|sp|Q1LQ59|SYA_RALME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 541/910 (59%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW MA+TGPCGPCSE Sbjct: 121 ADKLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+ + + T + N + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKGAGRETHIAD--LNQNSLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L +MG AYPEL +A+ + E L++ Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD ++ L ++L+G++AFKL+DT G PLD+ QD+ + + Sbjct: 359 EEERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GYD L Sbjct: 419 -VDEAAFDAAMTRQREQARAAGKFKMAAG-------LEYSGEKTVFHGYDALSMDGV--- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ G V+ GQ VV D TPFYAE+GGQ+GD Sbjct: 468 -------------------RVTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + + D K +F H + G L+ ++ +D R + NHSATH Sbjct: 509 GTLVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + PD RFD +H+ P+T A+++ IE+ VN I N P V Sbjct: 569 LMHKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVA 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++M +DA+ SGA AL G KY D VRV+S+ S LCGGTHV+ TG+I L IV Sbjct: 629 QVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVTRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E+ + AGIRR+EAITG A +L D +L A+ L+ +V R+ ++ ++ R L+ Sbjct: 683 VEAGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K K +L + + ++ + D K L+ MD L+ K+QS I+ Sbjct: 743 KELEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 803 LAAVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860 Query: 887 QAIAGVASFL 896 +A+AGV ++ Sbjct: 861 KALAGVTEWV 870 >gi|293604526|ref|ZP_06686931.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553] gi|292817107|gb|EFF76183.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553] Length = 874 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 400/911 (43%), Positives = 549/911 (60%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF+ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y Sbjct: 1 MKSSEIRRQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IFFD G I GG PGS E+G+RYIEIWNLVFMQFE+ + LP+ +DTGMGLER+ Sbjct: 181 IFFDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAEGNMPRLPRPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI A+ + TG+K NN + +VI DH+R+ SFLI DG++P+ Sbjct: 241 AAVLQGVHSNYEIDLFQKLIHAAARETGVKDLENN--SLKVIADHIRACSFLIVDGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL + + L+ Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELASMADRVAQVLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TL+ G+ +LD L+++ K +L+G F LYDT+G P+D+ DI R I Sbjct: 359 EEERFGETLEHGMRILDTALANVPKGGVLDGTTLFTLYDTYGFPVDLTADICRERD-VEI 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F ++E QR +ARA + L + T+F GY+ L Sbjct: 418 DMPGFEVSMERQRDQARAAGKFKMAEG-------LSYEGADTRFEGYEKLELDNV----- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ G V++ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 466 -----------------KVTALYVDGTQVQQVQAGQNAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 DG+R + D K G+F HH ++E G L +L+ +D R + NHSATHL+ Sbjct: 509 LQADGVRFAVADTLKIQNGVFGHHGVLESGSLSVGDTLLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD P+T+ ++ +E VN + N P V ++ Sbjct: 569 HKALRQVLGAHVQQRGSLVDAEKTRFDFAQDAPMTAEQIARVEAIVNAEVLANQPTVAQV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IVSE Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEAITG A + + Q+ L +A L+ + +V R+ ++ E+ + L+ Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQNQNALLTQIAGMLRSTPADVPARIAQVQEQIKALEKD 742 Query: 774 HAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 743 LEQSRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + K SV+ VT DL DR A DL A + GG GGGRP MA GG + Sbjct: 803 ATGSADGKISVVGGVTADLTDRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDLAALPA 861 Query: 888 AIAGVASFLKK 898 AIAGV ++ + Sbjct: 862 AIAGVQKWVDE 872 >gi|187478846|ref|YP_786870.1| alanyl-tRNA synthetase [Bordetella avium 197N] gi|123514444|sp|Q2KY72|SYA_BORA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115423432|emb|CAJ49966.1| alanyl-tRNA synthetase [Bordetella avium 197N] Length = 873 Score = 944 bits (2441), Expect = 0.0, Method: Composition-based stats. Identities = 395/911 (43%), Positives = 548/911 (60%), Gaps = 54/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+EK Y Sbjct: 1 MKSSEIRQKFLQFFQSKGHSIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKEKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPC+E Sbjct: 121 VEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI A+ + TG++ + + +VI DH+R+ SFLI DG++P+ Sbjct: 241 AAVLQGVHSNYEIDLFQKLITAAARETGVQD--LHDNSLKVIADHIRACSFLIVDGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T+P L+P L +MG AYPEL + + L+ Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFYRLVPDLVAQMGEAYPELANMAERVGQVLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TL+ G+ +LD L+ + K +L+G+ F LYDT+G P+D+ DI R I Sbjct: 359 EEERFGETLEHGMKILDVALAQVPKGGLLDGNTLFTLYDTYGFPVDLTADICRER-EVEI 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A+E QR +ARA + L + T+F GY+ L S Sbjct: 418 DMAGFEAAMERQRDQARAAGKFKMAEG-------LNYEGAQTRFEGYEQLELSG------ 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V A+ G ++ +GQ+ VV D TPFYAE+GGQ+GDTG Sbjct: 465 ----------------AKVTALYVDGTQTDQVRAGQQAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + DG+R + D K G+F HH ++E G+L+ +L+ +D R + NHSATHL+ Sbjct: 509 LVADGLRFAVADTLKVQAGVFGHHGLLEEGVLKVGDTLLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N R+ Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQAAQARV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IVSE Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RR+EAITG A + Q+ L+ A L+ + R+ ++ ++ + L+ Sbjct: 683 GGVAAGVRRVEAITGDNALVWVQEQNALLQRAAGVLRSPVAELPERIAQVQDQVKALEKD 742 Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L D S +I V ++ +I++VD K L+ ++D L+ K++ I++L Sbjct: 743 LEQARAKLAASAGNDLADKSAVEIKGVKVLAAVINDVDPKALRGMVDNLKDKLKPAIVLL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + K S++ VT D + A DL A + GG GGGRP MA GG + Sbjct: 803 AA-SADGKISLVGGVTADQTAKVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDVAALPA 860 Query: 888 AIAGVASFLKK 898 AIA V ++ + Sbjct: 861 AIASVQDWVNE 871 >gi|293392770|ref|ZP_06637088.1| alanine-tRNA ligase [Serratia odorifera DSM 4582] gi|291424629|gb|EFE97840.1| alanine-tRNA ligase [Serratia odorifera DSM 4582] Length = 875 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 390/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAIAYAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W+ G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFNIWQNEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATD--LDNKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIGVMGPAADELKSQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+E QR RAR S + SL GA++F GYD Sbjct: 420 -VDEAGFEAAMEAQRRRARE------SSGFGADYNSLIRVDGASEFCGYDH--------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + + A+ + G+ V+E +G++ VV D TPFY E+GGQ+GD Sbjct: 464 --------------DQQQAKITALFRDGQPVDEIHAGEEAVVVLDATPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + +G+L+ S+ ID R ++ +NHSATH Sbjct: 510 GILKSAAAEFVVGDTQKYG-QAIGHQGKLAQGVLKVGDSVDALIDQVRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + +++++ED VN + +NLPV T Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRAVEDLVNQQVRRNLPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L I Sbjct: 629 EVMALDDAKEKGAMALFGEKYDDHVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIATLHQQSDLLQEVAHLVKGDGNNLSEKVRAVLDRTRTLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q + ++ V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKDQQAALESASLSSKAKQVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + N Sbjct: 804 LATTA-EGKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGSDVNALP 861 Query: 887 QAIAGVASFL 896 A+ V +++ Sbjct: 862 AALDSVEAWV 871 >gi|222086162|ref|YP_002544694.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84] gi|221723610|gb|ACM26766.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84] Length = 886 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 508/896 (56%), Positives = 656/896 (73%), Gaps = 36/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYTT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKEF L Sbjct: 61 ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ KQER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKQERVDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF+ LI+ASE+ TG+K EG + +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL +MG AYPEL++A+ L ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALVQQMGRAYPELVRAEALTSETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ S L K + L+G+ AFKLYDT+G PLD+ QD L ARG G+DI SF Sbjct: 361 KTLERGLSLLNDATSTLHKGDSLDGETAFKLYDTYGFPLDLTQDALRARG-IGVDISSFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ AR+H G G TE IWF LKEK+GAT+F+GYD Sbjct: 420 DAMERQKAEARSHWTGSGDKATETIWFELKEKHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G V+ A +G KV+++ +QTPFY E+GGQ+GDTG D Sbjct: 462 -----TEVAEGVIQAIVKDGVAVDSASAGDKVQIIVNQTPFYGESGGQMGDTGVISSDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L ++D QKK EG+FVH A V G ++T ++VLT+D+ R +L NHSATHLLH AL Sbjct: 517 KLAVSDTQKKGEGLFVHIATVSDGTIKTGDAVVLTVDHNRRSRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTH S+TG+I L+ I+ +S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGVRGAKAGKPYSIELCGGTHASATGQIGLIRILGDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR +L QD+++K+LA+ LKV +VV RVE + +E RKL+ Sbjct: 697 AVGAGVRRIEAVTGESARDYLAEQDDRVKALATALKVQPTDVVSRVEALMDERRKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + + I V F+ IS VD K+LK + D + + SG++ L+ Sbjct: 757 ADAKRKLAMGGGQGGSADAVRDINGVKFLGKAISGVDPKDLKGLADEGKTSLGSGVVALI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 G+S++ KAS ++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 817 GVSEDGKASAVVAVTDDLIGRFSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGAK 872 >gi|222148884|ref|YP_002549841.1| alanyl-tRNA synthetase [Agrobacterium vitis S4] gi|221735870|gb|ACM36833.1| alanyl-tRNA synthetase [Agrobacterium vitis S4] Length = 887 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 487/909 (53%), Positives = 645/909 (70%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNDIRSTFLDYFKTNGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+EF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EAF LWKKI+GL +KIIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DRDKLCVTVYHTDDEAFGLWKKIAGLPEEKIIRIGTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ K++R LP+ SIDTGMGLER+A +LQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQVTKEQRVDLPRPSIDTGMGLERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF+ LI AS +TG+ EG +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFRALIDASVDLTGVPAEGERRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P++ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAELLGSRDPMIYKLLPVLVQQMGRAYPELVRAEALISETLKLEENRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K + ++G+ AFKLYDT+G PLD+ QD L ARG G+DI FN Sbjct: 361 KTLERGLSLLSDATATLNKGDSIDGETAFKLYDTYGFPLDLTQDALRARG-IGVDITGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA G G E +WF LK+K+GAT+F+GY Sbjct: 420 DAMQRQKAEARASWSGSGDKAMETVWFELKDKHGATEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++A+V+ G ++E+A +G+ V+VV +QTPFY E+GGQ+GDTG +GDG Sbjct: 461 ----SAESAEGEIQALVRDGAVIEQATAGENVQVVVNQTPFYGESGGQVGDTGEIVGDGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L++ D KK EG+FVH A V G +R + L +D+ R +L NHSATHLLH AL Sbjct: 517 VLEVRDTLKKGEGLFVHVATVREGTVRAGTVVALNVDHARRSRLRANHSATHLLHEALRD 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS + P+ LRFD++H KP+T+ ELK +ED N+II QN V TR+M +DA Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHPKPVTAEELKIVEDMANEIIVQNAAVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ +V+ES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTVVRGPKAGRPYSIELCGGTHVSATGDIGLVRLVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR++L QDE++K+LAS LKV +VV RVE + +E RKL+ Sbjct: 697 AVGAGVRRIEALTGESARAYLAEQDERVKALASALKVQPVDVVSRVEALVDERRKLEREL 756 Query: 775 AKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + S ++ + F+ ++ +D K+LK + D + + SG+++L+ Sbjct: 757 ADAKRKLAMGGGSTGAADVPRELGGIKFIGKQLAGIDPKDLKGMADEAKSVLGSGVVLLI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++++ KAS + VT DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+G KAD A Sbjct: 817 AVAEDGKASAVASVTGDLTSKVSAVDLVRIASSALGGKGGGGRPDMAQAGGPDGAKADDA 876 Query: 889 IAGVASFLK 897 I VA ++ Sbjct: 877 IEAVAKAIE 885 >gi|150396732|ref|YP_001327199.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419] gi|205830211|sp|A6U9N4|SYA_SINMW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150028247|gb|ABR60364.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419] Length = 887 Score = 943 bits (2437), Expect = 0.0, Method: Composition-based stats. Identities = 495/894 (55%), Positives = 653/894 (73%), Gaps = 37/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSMFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE+ TG+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + NG+ AFKLYDT+G PLD+ QD L A+G G+D +F Sbjct: 361 KTLERGLNLLEEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKG-IGVDTDAFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF L++K+GAT F+GYD Sbjct: 420 AAMQRQKAEARANWTGSGDAATETIWFELRDKHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G +VE A G+ V++V +QTPFY E+GGQ+GDTG + Sbjct: 462 -----TESAEGVIQAIVRDGTVVESASKGETVQLVLNQTPFYGESGGQVGDTGVVTTESG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L +TD QK+ EG+FVH+ +VE G ++T + L +D+ R +L NHSATHLLH AL Sbjct: 517 KLTVTDTQKRGEGLFVHYCVVEEGSVKTGEAAALAVDHARRTRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HVSQ GS + P+ LRFDV+H KP+TS ELK +E+ N+II QN PVVTR+M+ +DA Sbjct: 577 VLGTHVSQKGSLVAPERLRFDVSHPKPMTSEELKVVEEMANEIIVQNTPVVTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ IVSES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLHGSKAGKAYSVELCGGTHVSATGDIGLVRIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ +G+RR+EA+TG+ AR++L QDE++K+LA+ LKV +V+GRVE + +E RKL+ Sbjct: 697 AVGSGVRRVEALTGEAARAYLGEQDERVKALAAALKVQPSDVLGRVESLLDERRKLEREL 756 Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + + +I V F+ ++S V+ K+LKS+ D +K + SG++ Sbjct: 757 TEAKKKLALAGDGQNGSGEAAREIGGVRFLGRVVSGVEPKDLKSLADDGKKTLGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 VG+S + KAS ++ VT+DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPD 870 >gi|317403428|gb|EFV83940.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans C54] Length = 874 Score = 943 bits (2437), Expect = 0.0, Method: Composition-based stats. Identities = 395/911 (43%), Positives = 544/911 (59%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF+ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y Sbjct: 1 MKSSEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWNLVFMQFE+ LP+ +DTGMGLER+ Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI A+ + TG+K NN + +VI DH+R+ SFLI DG++P+ Sbjct: 241 AAVLQHVHSNYEIDLFQNLIAAAARETGVKDLENN--SLKVIADHIRACSFLIVDGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T P L+P L EMG AYPEL + + L+ Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTRPFFHRLVPDLVAEMGEAYPELAATAERVAQVLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TL+ G+ +LDG L+++ K L+G F LYDT+G P+D+ DI R + Sbjct: 359 EEERFGETLEHGMRILDGALANVPKGGQLDGTTLFTLYDTYGFPVDLTADICRER-EVDV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A+E QR +ARA + L + T+F GY+ L Sbjct: 418 DMAGFEVAMERQRDQARAAGKFKMAEG-------LSYEGAETRFEGYEKLELDNV----- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ G V++ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 466 -----------------KVTALYVDGTQVQQVQAGQSAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D K G+F HH +E G L +++ +D R + NHSATHL+ Sbjct: 509 LEAAGVRFAVGDTLKIQSGVFGHHGTLEEGKLAVGDTVLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD P+T+ ++ +E VN I N P V ++ Sbjct: 569 HKALRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IVSE Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVGRTGDIGLFKIVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEAITG A + + Q L +A L+ + ++ R+ ++ ++ ++L+ Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQNQSALLAQVAGMLRSTPADLPARISQVQDQVKQLEKD 742 Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 743 LEQSRSKLAASAGNDLASSAAVEVKGIKLLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + K SV+ VT DL +R A DL A + GG GGGRP MA GG + Sbjct: 803 ATGSADGKISVVGGVTADLTNRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDIAALPA 861 Query: 888 AIAGVASFLKK 898 AIA V ++ + Sbjct: 862 AIASVQKWVDE 872 >gi|311105349|ref|YP_003978202.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8] gi|310760038|gb|ADP15487.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8] Length = 874 Score = 943 bits (2436), Expect = 0.0, Method: Composition-based stats. Identities = 399/911 (43%), Positives = 546/911 (59%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF+ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y Sbjct: 1 MKSSEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWNLVFMQFE+ LP+ +DTGMGLER+ Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ+ +NY+IDLF+HLI A+ + TG+K + +VI DH+R+ SFLI DG++P+ Sbjct: 241 AAVLQDVHSNYEIDLFQHLIAAAARETGIK--NLEDNSLKVIADHIRACSFLIVDGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL + + L+ Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGDAYPELAATADRVAQVLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TL+ G+ +LD L+++ K L+G F LYDT+G P+D+ DI R L + Sbjct: 359 EEERFGETLEHGMRILDSALANVPKGGQLDGMTLFTLYDTYGFPVDLTADICREREL-DV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A+E QR +ARA + L + T+F GY+ L Sbjct: 418 DMAGFEVAMERQRDQARAAGKFKMAEG-------LSYEGADTRFEGYEKLELDGV----- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ G V++ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 466 -----------------KVTALYVDGTQVQQVKAGQSAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 DG+R + D K G+F HH +E G L +L+ +D R + NHSATHL+ Sbjct: 509 LEADGVRFAVADTLKIQAGVFGHHGELESGTLSVGDTLLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD P+T+ ++ +E VN I N P V ++ Sbjct: 569 HKALRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IVSE Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEAITG A + + Q+ L +A L+ + ++ R+ ++ E+ + L+ Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQNQNALLTQVAGMLRSTPADLPARIAQVQEQVKSLEKD 742 Query: 774 HAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 743 LEQSRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + K SV+ VT DL R A DL A + GG GGGRP MA GG + Sbjct: 803 ATGSADGKISVVGGVTADLTGRVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDLAALPA 861 Query: 888 AIAGVASFLKK 898 AIA V ++ + Sbjct: 862 AIASVQKWVDE 872 >gi|157369088|ref|YP_001477077.1| alanyl-tRNA synthetase [Serratia proteamaculans 568] gi|157320852|gb|ABV39949.1| alanyl-tRNA synthetase [Serratia proteamaculans 568] Length = 892 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 20 KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 79 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F+ Sbjct: 80 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFN 139 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EAF +W++ G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 140 LPKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 199 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLE Sbjct: 200 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 259 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF LI A +VTG + + RVI DH+RS +FL++DG+ Sbjct: 260 RIAAVLQHVNSNYEIDLFSKLIAAVAKVTGATD--LDNKSLRVIADHIRSCAFLVSDGVT 317 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG + L+ L MG A EL + + L+E+ L Sbjct: 318 PSNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVL 377 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+++F +TL+RGL LLD L++L + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 378 KTEEDQFARTLERGLTLLDEELANLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 436 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + S+ GA+QF GYD Sbjct: 437 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSMIRVDGASQFSGYDH--------- 480 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G+ V E +G++ VV D+TPFY E+GGQ+GD Sbjct: 481 --------------EQQQSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDK 526 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +++D QK + H + G L+ + ID R ++ +NHSATH Sbjct: 527 GVLKAANADFEVSDTQKYGQ-AIGHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATH 585 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++++ED VN I +NLPV T Sbjct: 586 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQT 645 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L I+ Sbjct: 646 EVMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 700 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG A + L Q++ L+ +A +K N+ +V + + R L+ Sbjct: 701 SESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALE 760 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + + V++K L++++D L+ ++ S II+ Sbjct: 761 KELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIV 820 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 821 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALP 878 Query: 887 QAIAGVASFL 896 A+ V +++ Sbjct: 879 AALDSVEAWV 888 >gi|327394965|dbj|BAK12387.1| alanyl-tRNA synthetase AlaS [Pantoea ananatis AJ13355] Length = 875 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 550/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F GQEK Y Sbjct: 3 KSTAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFK 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF+ LI+A +VTG N + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVLQHVNSNYEIDLFQTLIEAVAKVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + +E L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +SE+E+F KTL+RGL LLD L+ L + L+G+ F+LYDT G P D+ D+ R L Sbjct: 361 KSEEEQFAKTLERGLALLDEELAKLQ-SDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F +A+E+QR RAR + ++ A+ F GY+ L Sbjct: 420 -IDEAGFEKAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYEQLD------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ VKA+ GE V+ +GQ +V D+TPFY E+GGQ+GDT Sbjct: 466 ----------------LTATVKALFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H + G LR L +D R ++ +NHSATH Sbjct: 510 GELKGNNALFSVQDTQKYGQ-AIGHIGKLSSGQLRVGDRLEAVVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV T Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M+ E A A GA AL G KY+ +VRV+++ G S LCGGTH + TG+I L I Sbjct: 629 RVMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEAITG+ A + + Q +L+ +A +K + N+ +V + + R L+ Sbjct: 684 AESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + Q ++ + + V + +S D K L++++D L+ ++ S II+ Sbjct: 744 KELQQLRDQQAAQESAQLGNHAVDVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT+DL DR A +L A + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV-GGKGGGRPDMAQAGGSDATALK 861 Query: 887 QAIAGVASFL 896 A+AGV ++ Sbjct: 862 GALAGVEGWV 871 >gi|325293275|ref|YP_004279139.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3] gi|325061128|gb|ADY64819.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3] Length = 897 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 488/897 (54%), Positives = 642/897 (71%), Gaps = 37/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 11 MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 70 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 71 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 130 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 131 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 190 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER++ +LQ Sbjct: 191 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 250 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DLF+ LI AS + TG+ EG +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 251 KHDNYDTDLFRALISASVEATGVPAEGEKRASHRVIADHLRSSAFLIADGVLPSNEGRGY 310 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPL+ LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 311 VLRRIMRRAMRHAELLGSREPLIYKLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 370 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL S L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 371 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 429 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF LKEK GAT+F+GYD Sbjct: 430 DAMQRQKAEARSHWAGSGDKATETVWFELKEKLGATEFLGYD------------------ 471 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G+ V+ A G+ V++V +QTPFY E+GGQ+GDTG GD Sbjct: 472 -----TETAEGVIQAIVKDGKSVDSAAEGETVQIVVNQTPFYGESGGQMGDTGVISGDNG 526 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ QKK EG+FVH V +G L+ + ++ LT+D+ R +L NHSATHLLH AL Sbjct: 527 TFTVSETQKKGEGLFVHSGTVSKGGLKLDDAVQLTVDHDRRSRLRANHSATHLLHEALRE 586 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +E+ N+I+ QN PVVTR+M+ +DA Sbjct: 587 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNSPVVTRLMSVDDA 646 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV++TG+I L+ I+ ES Sbjct: 647 IAEGAMALFGEKYGDEVRVVSMGTGVHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 706 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TGQ A ++L QDE++K+LAS LKV G+V+ RVE + +E +KL+ Sbjct: 707 AVGAGVRRLEAVTGQGALAYLSEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 766 Query: 775 AKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A + +L ++A VNF++ +S +D+K+LK + D + I SG+++L Sbjct: 767 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANIGSGVVLL 826 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + +S++ KAS + VTEDL RF+AVD+ R ++ LGG GGGGRP MAQ+GGP+G K Sbjct: 827 IAVSEDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGAK 883 >gi|167587422|ref|ZP_02379810.1| alanyl-tRNA synthetase [Burkholderia ubonensis Bu] Length = 874 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 381/912 (41%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTESRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + N + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISD--LNNNSLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID R + NHSATH Sbjct: 509 GVLANASTRFAVGDTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHVS TG+I IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELALQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 AALAGVKGWVEE 872 >gi|159184958|ref|NP_354854.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] gi|22096194|sp|Q8UE87|SYA_AGRT5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|159140236|gb|AAK87639.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] Length = 887 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 485/897 (54%), Positives = 641/897 (71%), Gaps = 37/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER++ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DLF+ LI AS + TG+ EG + +HRVI DHLRSS+FLIADG+LP++EGRGY Sbjct: 241 KHDNYDTDLFRALIAASVEATGVPAEGEHRASHRVIADHLRSSAFLIADGVLPSSEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PL+ LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAELLGSRDPLIYRLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL S L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 361 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF LKEK+GAT+F+GYD Sbjct: 420 DAMQRQKAEARSHWAGSGDKATETVWFELKEKFGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G+ V+ A G+ V +V +QTPFY E+GGQ+GDTG +GD Sbjct: 462 -----TESAEGVIQAIVRDGKEVDSAAEGETVHIVVNQTPFYGESGGQMGDTGVIVGDAG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ QKK EG+FVH V +G L+ ++ LT+D+ R +L NHSATHLLH AL Sbjct: 517 TFDVSGTQKKGEGLFVHSGTVSKGGLKVNEAVQLTVDHDRRSRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PVVTR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEDMANEIVLQNSPVVTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV++TG+I L+ I+ ES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ +G+RR+EA+TGQ A ++L QDE++K+LAS LKV G+V+ RVE + +E +KL+ Sbjct: 697 AVGSGVRRLEAVTGQGALAYLAEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 756 Query: 775 AKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A + +L ++A VNF++ +S +D+K+LK + D + + SG+++L Sbjct: 757 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANLGSGVVLL 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + +S + KAS + VTEDL RF+AVD+ R ++ LGG GGGGRP MAQ+GGP+G K Sbjct: 817 IAVSDDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGTK 873 >gi|291618585|ref|YP_003521327.1| AlaS [Pantoea ananatis LMG 20103] gi|291153615|gb|ADD78199.1| AlaS [Pantoea ananatis LMG 20103] Length = 875 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 394/910 (43%), Positives = 549/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F GQEK Y Sbjct: 3 KSTAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFK 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF+ LI+A +VTG N + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVLQHVNSNYEIDLFQTLIEAVAKVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + +E L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +SE+E+F KTL+RGL LLD L+ L + L+G+ F+LYDT G P D+ D+ R L Sbjct: 361 KSEEEQFAKTLERGLALLDEELAKLQ-GDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F +A+E+QR RAR + ++ A+ F GY+ L Sbjct: 420 -IDEAGFEKAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYEQLD------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ VK + GE V+ +GQ +V D+TPFY E+GGQ+GDT Sbjct: 466 ----------------LTATVKGLFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H + G LR L +D R ++ +NHSATH Sbjct: 510 GELKGNNALFSVQDTQKYGQ-AIGHIGKLSSGQLRVGDCLEAVVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV T Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M+ E A A GA AL G KY+ +VRV+++ G S LCGGTH + TG+I L I Sbjct: 629 RVMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEAITG+ A + + Q +L+ +A +K + N+ +V + + R L+ Sbjct: 684 AESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + Q ++ + + V + +S D K L++++D L+ ++ S II+ Sbjct: 744 KELQQLRDQHAAQESAQLGNHAVDVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT+DL DR A +L A + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV-GGKGGGRPDMAQAGGSDATALK 861 Query: 887 QAIAGVASFL 896 A+AGV ++ Sbjct: 862 GALAGVEGWV 871 >gi|205830246|sp|A8GA09|SYA_SERP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 875 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EAF +W++ G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF LI A +VTG + + RVI DH+RS +FL++DG+ Sbjct: 243 RIAAVLQHVNSNYEIDLFSKLIAAVAKVTGATD--LDNKSLRVIADHIRSCAFLVSDGVT 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG + L+ L MG A EL + + L+E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+++F +TL+RGL LLD L++L + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 361 KTEEDQFARTLERGLTLLDEELANLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + S+ GA+QF GYD Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSMIRVDGASQFSGYDH--------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G+ V E +G++ VV D+TPFY E+GGQ+GD Sbjct: 464 --------------EQQQSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +++D QK + H + G L+ + ID R ++ +NHSATH Sbjct: 510 GVLKAANADFEVSDTQKYGQ-AIGHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++++ED VN I +NLPV T Sbjct: 569 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L I+ Sbjct: 629 EVMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG A + L Q++ L+ +A +K N+ +V + + R L+ Sbjct: 684 SESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + + V++K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALP 861 Query: 887 QAIAGVASFL 896 A+ V +++ Sbjct: 862 AALDSVEAWV 871 >gi|148256734|ref|YP_001241319.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] gi|205829994|sp|A5EML9|SYA_BRASB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146408907|gb|ABQ37413.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] Length = 896 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 473/916 (51%), Positives = 618/916 (67%), Gaps = 44/916 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI +DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG PGS E +G+R+IEIWNLVFMQ+EQ R LPK SIDTG GLER+A VLQ Sbjct: 181 DKVWGGPPGSPEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A +T +G + RVI DHLR+SSFLI+DG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPELI+A+ LI+ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEALIKETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD S L K ++ +GDVAF LYDT+G PLD+ QD L +RG +D SF Sbjct: 361 KTLERGLAILDEKSSTLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-ISVDQASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR++ARA G G TE +WF L+EK GAT+F+GY+ Sbjct: 420 DAMERQRAKARAAWAGSGEAATENVWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G VE +G+ +V +QTPFY E+GGQ+GDTG GDG+ Sbjct: 462 -----TETAEGAVTALVKDGAEVEGLKAGESGAIVLNQTPFYGESGGQVGDTGVMSGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R++ITD QKKA +FVH VE+G L+ +L L +D+ R + NHSATH+LH AL Sbjct: 517 RVRITDTQKKAGDLFVHIGTVEQGTLKLGAALQLEVDHGRRSAIRANHSATHILHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS ++PD LRFD H KPI++ EL +ED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFAHPKPISAEELARVEDIANDVVLENAEVTTRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----------EDGGVHSSALCGGTHVSSTGEIMLL 708 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDQASNAQASNAMGWSVELCGGTHVKRTGDIGLI 696 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + SES++ +G+RRIEA+T + AR+H K+ A+ L+ + V R+ + EE + Sbjct: 697 AVTSESAVSSGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARIAALMEERK 756 Query: 769 KLQLIHAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 KL+ + + +L + ++A V M+ + V+ K+LKS++D +K++ Sbjct: 757 KLERELSDARKKLAMGGGAAAGGSASGIREVAGVKLMARAVEGVEMKDLKSLVDEAKKQL 816 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 SG++ +VG +++ KA V++ VT DL RFNAV+L R +++ LGG GGGGRP MAQ+GGP Sbjct: 817 GSGVVAIVGRAEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGP 876 Query: 881 NGNKADQAIAGVASFL 896 +G+KA+ A+A + S + Sbjct: 877 DGSKAEAALAAIESAI 892 >gi|73540553|ref|YP_295073.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134] gi|83305858|sp|Q474F4|SYA_RALEJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|72117966|gb|AAZ60229.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134] Length = 874 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 532/910 (58%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ ++I+RI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSRYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IFFD G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + T + N + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHID--NLNQNSLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L +MG AYPEL A+ + E L++ Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD L+ L + L+G++AFKL+DT G PLD+ QD+ + Sbjct: 359 EEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQ-EI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ L Sbjct: 418 AVDEAAFDAAMNRQREQARAAGKFKMAAG-------LEYSGDKTVFHGYEKLELP----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ G V+ GQ +V D TPFYAE+GGQ GD Sbjct: 466 -----------------QAKIIALYVDGAAVDAMQPGQTGVIVLDNTPFYAESGGQAGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D K +F H +E G L+ ++ +D R + NHSATH Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRARTVRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +ED VN I +N Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHA 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM +DA+ SGA AL G KY D VRV+S+ S LCGGTHV TG+I L IV Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A +L D KL A+ LK +V R+ ++ E+ R L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAALKAQPSELVPRIGQVQEQVRALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L + + ++ + D K L+ MD L+ K+QS I+ Sbjct: 743 KELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860 Query: 887 QAIAGVASFL 896 QA++GV ++ Sbjct: 861 QALSGVVEWV 870 >gi|227822193|ref|YP_002826164.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234] gi|227341193|gb|ACP25411.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234] Length = 887 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 489/894 (54%), Positives = 650/894 (72%), Gaps = 37/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSMFLDYFRKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVNLPRPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE+ TG+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L + + +G+ AFKLYDT+G PLD+ QD L +G+ +D +F+ Sbjct: 361 KTLERGLSLLADASAGLSEGDQFDGETAFKLYDTYGFPLDLTQDALRTKGIT-VDTDAFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF LKEK+GAT F+GYD Sbjct: 420 TAMQRQKAEARANWAGSGEAATETIWFELKEKHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G +VE A G+ V+++ +QTPFY E+GGQ+GDTG + Sbjct: 462 -----TESAEGVIQAIVRDGAVVESASKGESVQLILNQTPFYGESGGQMGDTGVIATETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD QK+ EG+FVH+ V GI++T + LT+D+ R +L NHSATHLLH AL Sbjct: 517 KVAVTDTQKRGEGLFVHYGTVTEGIVKTGEAAALTVDHARRLRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ EL+ +E+ N++I QN PV TR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELRIVEEMANEVIVQNTPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ +VSES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGIRGSKAGRPYSVELCGGTHVSATGDIGLVRVVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR++L QDE++KSLAS LKV +V+GRVE + +E RKL+ Sbjct: 697 AVGAGVRRLEALTGEAARAYLNEQDERVKSLASALKVQPADVLGRVEALLDERRKLEREL 756 Query: 775 AKRKLQLNV-------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + + +I V F+ ++S V+ K+LKS+ D +K + SG++ Sbjct: 757 TEAKKKLALVGDGENGSGDAAREIGGVRFLGKVVSGVEPKDLKSLADDGKKTLGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 VG+S + KAS ++ VT+DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPD 870 >gi|116252382|ref|YP_768220.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] gi|205830192|sp|Q1MFZ9|SYA_RHIL3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115257030|emb|CAK08124.1| putative alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] Length = 884 Score = 938 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 493/904 (54%), Positives = 639/904 (70%), Gaps = 38/904 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI E G+K +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 359 KTLERGLSLLSDATTDLAKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF LKEK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELKEKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + EA +G KV++V QTPFY E+GGQ+GDTG D Sbjct: 460 -----TETAEGVVQAIVKDGAVAAEASAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G+ + ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKRGEGLFVHQGTVVDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVV++ + G +S LCGGTHV +TG+I L+ ++ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKPYSIELCGGTHVGATGQIGLIRVLGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR +L QDE++K+LA+ LKV G V+ RVE + +E RKL+ Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754 Query: 775 AKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + + ++A V F+ IS VD K+LK + D + I SG++ LV Sbjct: 755 ADAKRKLAMGGGQGGSVDAVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALV 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+S + KAS ++ VT DL+ R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD+A Sbjct: 815 GVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKADEA 874 Query: 889 IAGV 892 I V Sbjct: 875 IEAV 878 >gi|254245667|ref|ZP_04938988.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184] gi|124870443|gb|EAY62159.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184] Length = 897 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 384/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 24 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 84 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 382 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 651 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L+ Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L +I V ++ + D+K L+ +D L+ K++S I+ Sbjct: 766 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 884 GALAGVKGWVEE 895 >gi|170732737|ref|YP_001764684.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] gi|205830047|sp|B1K026|SYA_BURCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169815979|gb|ACA90562.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] Length = 874 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 384/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L +I V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|191171366|ref|ZP_03032915.1| alanyl-tRNA synthetase [Escherichia coli F11] gi|190908300|gb|EDV67890.1| alanyl-tRNA synthetase [Escherichia coli F11] Length = 876 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + E+L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDATALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|256822655|ref|YP_003146618.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069] gi|256796194|gb|ACV26850.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069] Length = 875 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 384/912 (42%), Positives = 540/912 (59%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH ++ SS LIP NDPTL+FTN+GMV FK+ F G +K Y Sbjct: 1 MTTNQIRNAFLTFFENKGHHIVDSSPLIPANDPTLLFTNAGMVQFKDCFLGIDKRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+LLT+EF L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYCWELLTEEFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY+ED+EAF +W G AD+I RI N DNFW+M +TGPCGPCSE Sbjct: 121 KEKLWVTVYEEDDEAFDIWVNDIGFPADRISRIGDNKGERYASDNFWAMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +F+D GE I GG P E+G+R+IEIWNLVFMQF +Q LPK S+DTGMGLER+ Sbjct: 181 VFYDHGEEIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQKDGTMERLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+IDLF+HLI+++ + +K + + RVI DH+RS +FLI DGI+P+ Sbjct: 241 AAILQGVHSNYEIDLFQHLIKSTADLLKVKD--LDNKSLRVIADHIRSCAFLILDGIVPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG AYP L++ K LIE+ L Sbjct: 299 NEGRGYVLRRIVRRAVRHGHQLGAKGIFFAKLVQPLIEVMGEAYPALVEQKELIEKVLAK 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E F +TLD+G+++LD ++ L + ++GD FKLYDT+G P D+ DI +GL Sbjct: 359 EEEAFARTLDKGMLILDQDIADLVETNGKTISGDTVFKLYDTYGFPQDLTADIAREKGLE 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+ +QR RARA S + ++F GY + + Sbjct: 419 -VDWDGFEKAMNQQRERARAASNFG------TDYNDNFSIDERSEFTGYHYTQQNV---- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +V +++ + V+E G+K V+ +TPFYAEAGGQ+GDT Sbjct: 468 -------------------VVTRLLKGEDEVKELDQGEKGVVILAKTPFYAEAGGQVGDT 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK + H V+RG + L +D + R+ NHSATH Sbjct: 509 GRLFGCGATFIVEDTQKLGD-AIAHIGYVQRGSFSNDAELTAEVDAERRQHTMRNHSATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG+HV+Q GS + P+ LRFD ++ +P+T +L+ IE VN I +N V Sbjct: 568 LLHAALRDILGTHVTQKGSLVGPERLRFDFSNPEPVTQEQLRQIEALVNQKIYENHAVEA 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ ++A GA AL G KY D VRV+++ S LCGGTHV TG+I I+ Sbjct: 628 ATMSMDEAKEHGAMALFGEKYGDEVRVLTMSP-----FSVELCGGTHVQRTGDIGAFKIL 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AGIRRIEA TG A + + + L+S+ LK V +V ++ ++ R+L+ Sbjct: 683 SESGIAAGIRRIEATTGAGAVNWMQSTEASLQSIGKLLKSEPSQVAEKVNQLMDKSRQLE 742 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L S + + + + V++K L+ + D L+ K+ S I++ Sbjct: 743 KTIEALQSKLASSQGSDLASQAEDLNGIKLLVAKLEGVEAKALRDIQDQLKNKLGSSIVV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L GI++E K S+++ V++DL + A +L + A + GG GGGRP MAQ+GG + Sbjct: 803 L-GIAEEDKVSIIVGVSKDLTGKVKAGELVNMVASQV-GGKGGGRPDMAQAGGKDPAALP 860 Query: 887 QAIAGVASFLKK 898 A+ V ++ + Sbjct: 861 AALDSVKPWVAE 872 >gi|172060378|ref|YP_001808030.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6] gi|205829999|sp|B1YNJ6|SYA_BURA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171992895|gb|ACB63814.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6] Length = 874 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 378/912 (41%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKLGDVLRAEIDAHRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|205830048|sp|A0K6N4|SYA_BURCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++A V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|116689431|ref|YP_835054.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424] gi|116647520|gb|ABK08161.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424] Length = 897 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 24 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 84 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 382 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L+ Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++A V ++ + D+K L+ +D L+ K++S I+ Sbjct: 766 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 884 GALAGVKGWVEE 895 >gi|52424403|ref|YP_087540.1| alanyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E] gi|59798509|sp|Q65VQ5|SYA_MANSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52306455|gb|AAU36955.1| AlaS protein [Mannheimia succiniciproducens MBEL55E] Length = 875 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 391/912 (42%), Positives = 551/912 (60%), Gaps = 55/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVESSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIAYGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ AD IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKEVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE I GGLP E+G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A VLQ +NYDID+F+ LI+ Q+TG K + RVI DH+RS ++LIADG+ Sbjct: 241 ERIAAVLQHVNSNYDIDIFQTLIKKVAQLTGEKD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A + Q + LIE+T Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLADVMEHAGEIVNQKRALIEKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL+LLD LS + D +L+GDVAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLLLLDDALSQVK-DNVLSGDVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + ++ QR+RA+A S + ++ + G T+F GY+ S Sbjct: 418 T-IDEKGFEREMQAQRARAQASSNFG------VDYNNVIKVDGQTEFKGYETTSLS---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S+ V A+ G+ VE SG+ V+ D+TPFY E+GGQ+GD Sbjct: 467 ------------------SAKVVALFTDGKSVERVQSGENAVVILDRTPFYGESGGQIGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG D +I D QK + H +E G L ++ +D + R ++ NHSAT Sbjct: 509 TGYIATDLAAFRINDTQKYG-QVTGHIGQLESGSLSVGDTVSAQVDTERRLAVAANHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ LRFD + I+ ++ IE VN I +N+ V Sbjct: 568 HLLHAALRKVLGDHVAQKGSLVSESALRFDFIQPEAISKEQIIEIEAIVNRQIRENISVT 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 628 TEVMDIEAAKQKGAMALFGEKYGDLVRVVGMTG-----FSIELCGGTHVKRTGDIGLFKV 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSES+I AGIRRIEA+T + A + L Q L A LK ++V +++++ ++ +K Sbjct: 683 VSESAIAAGIRRIEAVTAENAINWLNNQQNILNQSADLLKSDTASLVEKIQQLQDKAKKA 742 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K + ++ S KI D++ + + +++K L+ ++D L+ ++ SG+I Sbjct: 743 EKELQQLKEKAAMQAGSDLAKSAVKINDISVIVQQLDGIETKSLRVMVDDLKNQLGSGVI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 803 VFASVV-EDKVNLIVGVTADLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 860 Query: 886 DQAIAGVASFLK 897 A++ + +L+ Sbjct: 861 GAALSACSDWLE 872 >gi|299131739|ref|ZP_07024934.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2] gi|298591876|gb|EFI52076.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2] Length = 888 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 480/908 (52%), Positives = 617/908 (67%), Gaps = 38/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSGFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TK+F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY ED+EAF LWKKI+GL +I+RI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVYAEDDEAFGLWKKIAGLPESRIVRIGTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +PGG P E+G+R+IEIWNLVFMQF+Q R LP SIDTGMGLER+A VLQ Sbjct: 181 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFDQIAPGNRNPLPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A +TG G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAISDLTGADPHGAQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM L+ AL EMG AYPEL++A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVWALVREMGQAYPELVRAEALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG G+D+ SF Sbjct: 361 KTLDRGLAILDEKSAALHKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-IGVDLASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++ARA G G EKIWF L+E+ GAT+F+GYD Sbjct: 420 DAMERQKAKARASWAGSGDTAAEKIWFPLREELGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G VE +G VV +QTPFY E+GGQ+GDTG GDG Sbjct: 462 -----TEIAEGVVTALVKDGASVESLKAGDAASVVLNQTPFYGESGGQVGDTGVLTGDGG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R ++TD QKKA +FVH +E+G L+ L L +D+ R + NHSATHLLH AL Sbjct: 517 VRFRVTDTQKKAGDLFVHIGQLEQGTLKKGAPLQLEVDHARRGAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS ++P+ LRFD H+KPIT EL IED NDI+ +N V TR+M ED Sbjct: 577 QVLGDHIAQRGSLVSPERLRFDFAHTKPITPDELSRIEDIANDIVLENGEVTTRLMGIED 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716 A +SGA AL G KY D VRVVS+ G S LCGGTHV TG+I L+ I ES++ Sbjct: 637 ARSSGARALFGEKYGDEVRVVSMGQGSGNALGWSVELCGGTHVRRTGDIGLVSITGESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+TG+ AR + K+ A+ LK + ++ R+ + EE +KL+ ++ Sbjct: 697 ASGVRRIEALTGRAARQAANHSIQTAKTAAAELKTTLEDMPVRIAALIEERKKLERDLSE 756 Query: 777 RKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L + + DV ++ + V+ K+LKS+ D +K+I SG++ Sbjct: 757 ARKKLAMGGGGSAGGAAAASDVRSVGDVKLLARAVQGVEVKDLKSLADQGKKQIGSGVVA 816 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LV S++ KASV++ VT DL RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD Sbjct: 817 LVATSEDGKASVVVGVTPDLTSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 876 Query: 887 QAIAGVAS 894 A+ + + Sbjct: 877 AALKAIEA 884 >gi|325529341|gb|EGD06275.1| alanyl-tRNA synthetase [Burkholderia sp. TJI49] Length = 874 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKDVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT N + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTETSD--LNNNSLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHQLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P++ E++ +E VND I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLSDDEIRRVEQIVNDEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELSALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 AALAGVKGWVEE 872 >gi|206559783|ref|YP_002230547.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315] gi|198035824|emb|CAR51715.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315] Length = 874 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 381/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTAVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L +I V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|86357937|ref|YP_469829.1| alanyl-tRNA synthetase [Rhizobium etli CFN 42] gi|86282039|gb|ABC91102.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42] Length = 899 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 490/904 (54%), Positives = 635/904 (70%), Gaps = 38/904 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 16 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 75 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 76 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 135 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 136 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 195 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 196 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 255 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L E G+K +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 256 VQSVFDTDLFRTLTGTIEDTIGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 313 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 314 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 373 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 374 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDIAGFT 432 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF L+EK+GAT+F+GYD Sbjct: 433 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + EA +G KV++V +QTPFY E+GGQ+GD G D Sbjct: 475 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 529 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G++R ++ +T+D+ R +L NHSATHLLH AL Sbjct: 530 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 589 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 590 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 649 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 650 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 709 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL+ Sbjct: 710 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 769 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + + ++A V F+ IS VD K+LK + D + I SG++ L+ Sbjct: 770 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 829 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+S++ KAS ++ VT DL++R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD+A Sbjct: 830 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 889 Query: 889 IAGV 892 I V Sbjct: 890 IEAV 893 >gi|205830239|sp|Q2K7T4|SYA_RHIEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 884 Score = 935 bits (2417), Expect = 0.0, Method: Composition-based stats. Identities = 490/904 (54%), Positives = 635/904 (70%), Gaps = 38/904 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L E G+K +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLTGTIEDTIGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 359 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDIAGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + EA +G KV++V +QTPFY E+GGQ+GD G D Sbjct: 460 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G++R ++ +T+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL+ Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 754 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + + ++A V F+ IS VD K+LK + D + I SG++ L+ Sbjct: 755 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+S++ KAS ++ VT DL++R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD+A Sbjct: 815 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 874 Query: 889 IAGV 892 I V Sbjct: 875 IEAV 878 >gi|115351339|ref|YP_773178.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD] gi|122323447|sp|Q0BG79|SYA_BURCM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115281327|gb|ABI86844.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD] Length = 874 Score = 935 bits (2417), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L +I V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|300722254|ref|YP_003711538.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061] gi|297628755|emb|CBJ89333.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061] Length = 875 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQVVPSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRPYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT K F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEKWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYDIWHKEVGVPTERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGLE Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF+ LI + VTG + RV+ DH+R+ +FLI DG++ Sbjct: 243 RITAVLQHVNSNYEIDLFQSLIASVADVTGATD--LTNKSLRVVADHIRACAFLICDGVV 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL Q + L+E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIKIMGAAGEELKQQQALVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLQLLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+E QR RAR S + L + G++ F GY+ Sbjct: 420 -VDEAGFEMAMENQRRRARE------SSGFGTDYNELIKVDGSSDFCGYEH--------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N +IV AI + GE VE+ +G++ V+ D+T FYAE+GGQ GD Sbjct: 464 --------------NSQQAIVTAIFRNGESVEQIHAGEEAVVILDKTAFYAESGGQAGDM 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D QK A + H + GIL ++ ID R + +NHSATH Sbjct: 510 GHLLNSDGVFEVLDTQKYA-QVIGHIGKLTSGILAVNHTVNAEIDVVRRDAIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HV+Q GS + LRFD +H + + S +++ +E+ VN+ I +N PVVT Sbjct: 569 LLHAALRQILGEHVAQKGSLVNDKYLRFDFSHFEAMKSEQIRQVENLVNEEIRKNSPVVT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M EDA + GA AL G KY+++VRV+S+ S+ LCGGTH S TG+I + I Sbjct: 629 ELMALEDAKSKGAMALFGEKYDEKVRVLSMGG-----FSTELCGGTHASRTGDIGVFRIS 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEAITGQ A + Q + L+ +A +K ++ +V+ + ++L+ Sbjct: 684 SESGTAAGIRRIEAITGQTALDAIYQQTDLLQDIAHLVKGDISSLNEKVKTTLDRMKQLE 743 Query: 772 LIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S +I V + + +V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L K S+++ +T+DL + A DL A+ + GG GGGRP +AQ+GG + Sbjct: 804 L-STVAGDKVSLIVGITKDLTAKIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVTALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 TALASVEEWV 871 >gi|323526792|ref|YP_004228945.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001] gi|323383794|gb|ADX55885.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001] Length = 890 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 538/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 17 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 77 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 137 KEKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 197 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 257 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 314 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++ L +MGSAYPEL A+ + + LR Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQQRVTDVLRQ 374 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L K + L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 375 EEERFFETIEHGMSILENALAELEKKGRKTLDGELAFKLHDTYGFPLDLTADVCREREVT 434 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA + L+ T F GY+ + Sbjct: 435 -VDEAAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 482 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V+E GQ+ VV D TPFYAE+GGQ+GD Sbjct: 483 ------------------AKVVALYVDGASVQEVAQGQQAVVVLDHTPFYAESGGQVGDQ 524 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R + D K + HH +E+GIL+ + ID R + + NHSATH Sbjct: 525 GLLANASVRFAVADTLKVQADVVGHHGTLEQGILKVGDVVKAEIDAVRRARTARNHSATH 584 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + PD RFD H+ P+T +++ +E+ VN + N P + Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 644 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ + AS LK + R+ ++ ++ ++L+ Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAASVLKAQPSELTQRITQVQDQVKQLE 758 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ ++A V ++ + D K L+ +D L+ K++S I+ Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRKTVDKLKDKLKSAAIV 818 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 876 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 877 AALAGVKGWVE 887 >gi|78066024|ref|YP_368793.1| alanyl-tRNA synthetase [Burkholderia sp. 383] gi|77966769|gb|ABB08149.1| alanyl-tRNA synthetase [Burkholderia sp. 383] Length = 897 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 24 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 84 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 381 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+G L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 382 EEERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 489 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 490 ------------------AKIVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 531 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID R + NHSATH Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 591 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + Sbjct: 592 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHVS +G+I IV Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRSGDIGFFKIV 705 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 765 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L +I V ++ + D+K L+ +D L+ K++S I+ Sbjct: 766 KELGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 826 LAAVES-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 884 GALAGVKGWVEE 895 >gi|218701187|ref|YP_002408816.1| alanyl-tRNA synthetase [Escherichia coli IAI39] gi|218371173|emb|CAR19004.1| alanyl-tRNA synthetase [Escherichia coli IAI39] Length = 876 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 397/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLATGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + S E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKSEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAVLP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|307730458|ref|YP_003907682.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003] gi|307584993|gb|ADN58391.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003] Length = 890 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 538/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 17 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 77 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 137 KEKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 197 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 257 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLANN--SLKVIADHIRACSFLIVDGVIPG 314 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++ L +MGSAYPEL A+ + + LR Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQARVTDVLRQ 374 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L K L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 375 EEERFFETIEHGMSILENALAELEKKGARTLDGELAFKLHDTYGFPLDLTADVCREREVT 434 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA S L+ T F GY+ + Sbjct: 435 -VDEAAFDEAMARQREQARAAGKFKMSQG-------LEYSGAKTTFHGYEEIVFDD---- 482 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V+E GQ+ VV D TPFYAE+GGQ+GD Sbjct: 483 ------------------AKVVALYVDGASVQEVAHGQQTVVVLDHTPFYAESGGQVGDQ 524 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R +TD K + HH +E+G L+ + ID R + + NHSATH Sbjct: 525 GLLANASVRFAVTDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 584 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + PD RFD H+ P+T +++ +E+ VN + N P + Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 644 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ ++L+ Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLE 758 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ ++A V ++ + D K L+ +D L+ K++S I+ Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 818 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLG 876 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 877 AALAGVKGWVE 887 >gi|241204888|ref|YP_002975984.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858778|gb|ACS56445.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 884 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 497/904 (54%), Positives = 641/904 (70%), Gaps = 38/904 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ ER LP+ SIDTGMGLERMA VLQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTAPGERSPLPRPSIDTGMGLERMAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI E G+K +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL ++L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 359 KTLERGLSLLSDATTNLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF LKEK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELKEKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV++G + A +G KV++V QTPFY E+GGQ+GDTG D Sbjct: 460 -----TETAEGVVQAIVKEGAVSTAAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G+ + ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKRGEGLFVHQGTVIDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVV++ + G +S LCGGTHV +TG+I L+ ++ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKAYSIELCGGTHVGATGQIGLIRVLGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR +L QDE++K+LA+ LKV G V+ RVE + +E RKL+ Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754 Query: 775 --AKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AKRKL + + ++A V F+ IS VD K+LK + D + I SG++ LV Sbjct: 755 GDAKRKLAMGGGQGGSVDAVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALV 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+S + KAS ++ VT DL+ R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD+A Sbjct: 815 GVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKADEA 874 Query: 889 IAGV 892 I V Sbjct: 875 IEAV 878 >gi|219870706|ref|YP_002475081.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165] gi|219690910|gb|ACL32133.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165] Length = 875 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 374/912 (41%), Positives = 553/912 (60%), Gaps = 55/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR FLEFFQ GH ++PSSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTSEIRQAFLEFFQSKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W + G+ A+ I+RI N DNFW M +TGPCGP Sbjct: 121 ALPKEKLWVTVYETDDEAYDIWNREIGVPAEHIVRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS+ E+G+R+IE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI+ + + + + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQALIKEIASLLNVTD--LDNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + +LG L+P L MG A L Q + I++ Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGNILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKA 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+++F +TL+RGL LL+ L+ + +++L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEDQFARTLERGLALLEDALTKVE-NKVLSGEVAFKLYDTYGFPLDLTADVCRERSI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + ++ QR+RA+A S + + + G+T+F GY++ Sbjct: 418 T-IDEAGFEREMQAQRARAQASSNFG------TDYNYVIKVDGSTEFKGYEVTE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ VE SG+ VV D+T FY E+GGQ+GD Sbjct: 465 -----------------CEATVVALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + ++ D QK +F H + G L + ++ R +++NHSAT Sbjct: 508 SGVIASEICNFEVNDTQKYG-QVFGHIGQLASGTLSVGDKVKAEVNATRRHAITLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ A+L+ IE +N I +N+ V Sbjct: 567 HLLHSALRQVLGDHVAQKGSLVSENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M+ E A GA AL G KY DRVRVV + S LCGGTHV TGEI L + Sbjct: 627 TEVMDLESAKQKGAMALFGEKYGDRVRVVDMT----AAFSVELCGGTHVKQTGEIGLFKV 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AG+RRIEA+TG+ A L Q + L A LK ++V +++++ E+ +K+ Sbjct: 683 VSEGAVAAGVRRIEAVTGENAIGLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKV 742 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + +I VN + + VD+K L++++D L+ ++ S +I Sbjct: 743 EKELQQLKDKLAAQAGGELAKQAQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + ++K ++++ VT+DL D+ NA +L L A+ + GG GGGR MA +GG Sbjct: 803 V-FATQTDEKVNLIVGVTKDLTDKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENI 860 Query: 886 DQAIAGVASFLK 897 QA+ ++++ Sbjct: 861 TQALNVATNWIQ 872 >gi|170695494|ref|ZP_02886639.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M] gi|170139685|gb|EDT07868.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M] Length = 890 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 377/911 (41%), Positives = 532/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 17 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 77 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 137 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG P E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 197 IFYDHGPDVWGGPPGSPDEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 257 AAVLQHVHSNYEIDLFQALINAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 314 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++ L +MG AYPEL A+ + + LR Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGGAYPELKDAEQRVTDVLRQ 374 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD L+ L K + L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 375 EEERFFETIEHGMSILDNALAELDKKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 434 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA + L+ T F GY+ + Sbjct: 435 -VDEAAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 482 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V++ GQ+ VV D TPFYAE+GGQ+GD Sbjct: 483 ------------------AKVVALYVDGASVQQVTHGQQAVVVLDHTPFYAESGGQVGDQ 524 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 525 GLLANASVRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 584 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + PD RFD H+ P+T +++ +E VN + N P + Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEQIVNAEVLANAPGIV 644 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ ++L+ Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLE 758 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ ++A V ++ + D K L+ +D L+ K++S I+ Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 818 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 876 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 877 AALAGVKGWVE 887 >gi|312795632|ref|YP_004028554.1| Alanyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454] gi|312167407|emb|CBW74410.1| Alanyl-tRNA synthetase (EC 6.1.1.7) [Burkholderia rhizoxinica HKI 454] Length = 893 Score = 934 bits (2413), Expect = 0.0, Method: Composition-based stats. Identities = 384/911 (42%), Positives = 536/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G + Y Sbjct: 20 MKAAEIREKFLRFFESKGHTIVRSSSLVPANDPTLLFTNSGMVQFKDVFLGADTRPYSRA 79 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L Sbjct: 80 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTRVYQLP 139 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L +TVY ED+EA+ +W G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 140 PEKLTVTVYHEDDEAYDIWANEIGVPLERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 199 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS EEG+R+IEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 200 IFYDHGPQVWGGPPGSADEEGDRFIEIWNLVFMQFNRDAQGNLTPLPKQCVDTGMGLERL 259 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI A+ + TG+ +N + +VI DH+R+ FLI DG++P Sbjct: 260 AAVLQHVHSNYEIDLFQRLIAAAARETGVLDLAHN--SLKVIADHIRACGFLIVDGVIPG 317 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL A+ + + LR Sbjct: 318 NEGRGYVLRRIVRRAIRHGYKLGRKSPFFHRLVEDLVGEMGAAYPELKVAQQRVTDVLRQ 377 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD LS L ++L+G++AFKL+DT+G PLD+ D+ RG Sbjct: 378 EEERFFETIEHGMSILDAALSELTARGAKVLDGELAFKLHDTYGFPLDLTADVCRERG-I 436 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 G+D ++F++A+ QR +ARA T + T F GYD Sbjct: 437 GVDEVAFDEAMARQREQARAAGKFRMVQTLD-------YTGSKTTFHGYDKHVFDD---- 485 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 486 ------------------AKVVAVYVDGTAVPSLRAGQQGVVVLDQTPFYAESGGQVGDQ 527 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R + D K + HH +E+G L+ + +D + R + + NHSATH Sbjct: 528 GTIGNATVRFAVFDTLKVQADVVGHHGTLEQGELKVGDVVSARVDAERRARTARNHSATH 587 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS + PD RFD +H P++ E++ +E VN + N P + Sbjct: 588 LMHKALREVLGPHVQQKGSLVDPDKTRFDFSHHAPLSDDEIRRVEAIVNAEVLANTPGLA 647 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ SGA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 648 RVMPFDDAVKSGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVQRTGDIGLFKIV 701 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ + L A+ LKV + R+ ++ +++R L+ Sbjct: 702 FEGGVAAGIRRVEAITGDNAVRYVQDLESTLAGAAAALKVQPAELAPRIAQVQDQFRALE 761 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ K ++ +A V+ ++ + D K L+ +D L+ K++ I+ Sbjct: 762 KELAQLKSKIASSQGDELVSQAVDVAGVHVLAAQLEGADVKTLRETVDKLKDKLKHAAIV 821 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + +K Sbjct: 822 LASVD-GGKVSLIAGVTTDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPSKLP 879 Query: 887 QAIAGVASFLK 897 A++GV +++ Sbjct: 880 AALSGVKEWIQ 890 >gi|308187884|ref|YP_003932015.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1] gi|308058394|gb|ADO10566.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1] Length = 875 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 400/911 (43%), Positives = 554/911 (60%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GHE++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFS 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYNIWADEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ LIQA QVTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RISAVLQHVNSNYEIDLFQKLIQAVAQVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLVEVMGAAGEELQRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +SE+++F +TL+RGL LLD L L + L+G++ F+LYDT G P D+ D+ R L Sbjct: 361 KSEEDQFARTLERGLALLDEELEKLQ-GDTLDGEIVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F QA+E+QR RAR + ++ A+ F GYD L Sbjct: 420 -IDEAGFEQAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYDQLD------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ VKA+ GE V+E +GQ VV D+TPFY E+GGQ+GDT Sbjct: 466 ----------------LAATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK + H + G LR L +D R ++ +NHSATH Sbjct: 510 GLLKGKNAEFSVQDTQKYGQ-AIGHVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV T Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPHEIRQVEDIVNAQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A + GA AL G KY+ RVRV+++ G S LCGGTH + TG+I L I Sbjct: 629 EVMDLEAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEAITG+ A + + Q +L+ LA +K + N+ +V + + R L+ Sbjct: 684 AESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDYVRALE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + Q ++ + + V + ++ V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLRDQQAAQESASLSSNAIDVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELIAGLAQQV-GGKGGGRPDMAQAGGTDADALK 861 Query: 887 QAIAGVASFLK 897 A+AGV S++ Sbjct: 862 GALAGVESWVN 872 >gi|304399190|ref|ZP_07381057.1| alanyl-tRNA synthetase [Pantoea sp. aB] gi|304353244|gb|EFM17624.1| alanyl-tRNA synthetase [Pantoea sp. aB] Length = 875 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 399/911 (43%), Positives = 552/911 (60%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GHE++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFS 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAFDIWANEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ LIQA QVTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RISAVLQHVNSNYEIDLFQKLIQAVAQVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEELQRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +SE+++F +TL+RGL LLD L L + L+G++ F+LYDT G P D+ D+ R L Sbjct: 361 KSEEDQFARTLERGLALLDEELEKLQ-GDTLDGEIVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F QA+E+QR RAR + ++ A+ F GYD L Sbjct: 420 -IDEAGFEQAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYDQLD------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ VKA+ GE V+E +GQ VV D+TPFY E+GGQ+GDT Sbjct: 466 ----------------LAATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK + H + G LR L +D R ++ +NHSATH Sbjct: 510 GLLKGKNAEFSVQDTQKYGQ-AIGHVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV T Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ + A + GA AL G KY+ RVRV+++ G S LCGGTH + TG+I L I Sbjct: 629 EVMDLDAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEAITG+ A + + Q +L+ LA +K + N+ +V + + R L+ Sbjct: 684 AESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDHVRALE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + Q ++ + + V + ++ V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLRDQQAAQESASLSSNAIDVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ VT+DL R A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVTKDLTGRVKAGELIAGLAQQV-GGKGGGRPDMAQAGGTDAKGLK 861 Query: 887 QAIAGVASFLK 897 A+AGV S++ Sbjct: 862 GALAGVESWVN 872 >gi|189426203|ref|YP_001953380.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ] gi|189422462|gb|ACD96860.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ] Length = 876 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 384/905 (42%), Positives = 539/905 (59%), Gaps = 42/905 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F+ GH ++ SS LIP NDPTLMFTN+GM FK+ F G E Y Sbjct: 1 MTGNEIRARFLKYFEDRGHVVVSSSGLIPQNDPTLMFTNAGMNQFKDCFLGMEDRGYYRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD Sbjct: 61 ASSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY+TVY +D+EA +W + G+ ++I R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 TSRLYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + +RY+EIWN VFMQF + LPK ++DTGMGLER+ TV+Q Sbjct: 181 EVGCGSPDCAVGCDCDRYMEIWNNVFMQFNRTADGVLHPLPKPAVDTGMGLERITTVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD DL + +I+ E+ +G KY + V+ RVI DH R+ +FLI DG LP+NEGR Sbjct: 241 VRSNYDTDLLQGIIRHIERHSGKKYGDNEKDSVSMRVIADHCRAVTFLICDGALPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG EPL+ ++ A+ MG AYPEL + + I + + +E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGVAEPLLCRMVDAVREMMGDAYPELAERETYIRKVVLAEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ ++ L ++ G+ FKLYDT G P+D+ +DI+ A G + +D Sbjct: 361 FNETLDRGLAILNEEVASLRAGGCSVIPGETLFKLYDTFGFPVDLTEDIVRAEGFS-VDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E QR R H G G+ ++ L T F+GY L Sbjct: 420 PGFEACMEHQRELGREHWKGSGAAGIADVYKELHNHGLRTNFVGYGSL------------ 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V A+++ G+ V+ A +G K++++ D +PFY E+GGQ GDTGC Sbjct: 468 -----------TAFSPVTALLRDGKKVQSATAGDKIDLICDTSPFYGESGGQAGDTGCIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 RL++ + + VHHA+V+ G ++T ++ LT+ RR + NHSATHLL Sbjct: 517 SGSARLEVLATSRPFTDLVVHHALVKEGAIKTGDAVNLTVAIDKRRATARNHSATHLLQA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H+ Q GS + P+ LRFD TH +T EL+ +ED VN I N + R M Sbjct: 577 ALRQVLGEHIKQAGSLVEPNRLRFDFTHFTGVTPEELQQVEDLVNGWIMDNAELNIREMG 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A+ SGA AL KY VRVV + G S+ LCGGTHV + G+I L I+SE Sbjct: 637 MQEAVESGATALFDEKYGSTVRVVRI-----GEVSAELCGGTHVRAAGDIGLFKILSEGG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIE TG A S + + + +++A LK +V RVE++ E R+LQ Sbjct: 692 IAAGVRRIEGATGFNALSFVRRLEGERQTVAELLKADSSKLVDRVEKLVERQRELQREVE 751 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN + V ++ + VD K L+ + D L+ K+ SG+++L G Sbjct: 752 SLQGKLNTAQSGDLLSQVQEAGGVKLLAVQVQVVDIKALRDMADQLRDKLGSGVVVL-GA 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + KA++L+ VT+DL RF A +L A ++ GG GGG+P +AQ+GG K +A+A Sbjct: 811 ELDGKANLLVTVTKDLTGRFKAGELVGTLAPII-GGRGGGKPELAQAGGSQPEKLPEALA 869 Query: 891 GVASF 895 V++ Sbjct: 870 AVSAL 874 >gi|332173020|gb|AEE22274.1| alanyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 865 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 388/903 (42%), Positives = 561/903 (62%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL FF GH+ + SSSL+P +DPTL+FTN+GM FK++F G E+ Y Sbjct: 3 KSTAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI AW LT+E L Sbjct: 63 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIAYAWTFLTQELKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L +T+Y ED+EAF +W G+ +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 123 KEKLLVTIYSEDDEAFDIWHNEIGVPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 182 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P E+G+R+IEIWNLVFMQF +Q + LPK SIDTGMGLER++ +LQ Sbjct: 183 HIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAILQNV 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID+F++LI+A+ ++ G + RV+ DH+RS SFLI+DG++P+NEGRGYV Sbjct: 243 HSNYEIDIFQNLIKATAEIVGTS--SLEDKSLRVVADHIRSCSFLISDGVMPSNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG L+ AL TEMG AYPEL + + +IE+ LR E+E+F + Sbjct: 301 LRRIIRRAVRHGNKLGAKGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSR 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG+++L+ LS L +++ G++ FKLYDT+G P D+ D+ +GL+ ID F Q Sbjct: 361 TLERGMLILNDALSELE-GKVVPGELVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQ 418 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ EQR RA+ + + + F+GY+L Sbjct: 419 AMAEQRKRAQKA------SNFDLDYNEQLRSDLESVFVGYEL------------------ 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 ++ +K I QG+ V E +G + ++ D++PFYAEAGGQ GDTG + D Sbjct: 455 -----EQNTAQIKEIFVQGQSVAEIAAGMEGTIILDESPFYAEAGGQAGDTGTLVKDSGG 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D K + I H L+ S+ ++ R + +NHSATHL+H AL ++ Sbjct: 510 FEVQDTVKLGKAI--AHKGAALSELKVGDSVQANVNGARRHAIKLNHSATHLMHAALKSV 567 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P+ LRFD +H + +T ++ ++E VN+ I N + T++M E A Sbjct: 568 LGEHVNQKGSLVQPERLRFDFSHYEAMTKEQVLAVETMVNEQILANHALQTKLMGLEQAK 627 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY+D VRVVS+ G S LCGGTHV+ TG+I L I+SES I +G+ Sbjct: 628 EAGAMALFGEKYDDDVRVVSM-----GDFSMELCGGTHVARTGDIGLFKIISESGIASGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A ++ Q +L S+++ LK V RV ++ E+ + L+ K K + Sbjct: 683 RRIEAVTGITALQYVQQQAFELTSISAVLKTDVTTVGERVLQLIEQTKTLEKEVTKLKQE 742 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + S ++I V +S+ + ++S L++++D L+ +I SG+I+L G++ +K Sbjct: 743 IANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GVATGEK 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+DL + A +L A+ + GG GGGRP MAQ+GG D AIA V + Sbjct: 802 VSLIAGVTKDLTQKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDSAIASVNEW 860 Query: 896 LKK 898 L++ Sbjct: 861 LQE 863 >gi|170701933|ref|ZP_02892858.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] gi|170133166|gb|EDT01569.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] Length = 874 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 378/912 (41%), Positives = 534/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGGAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + NHSATH Sbjct: 509 GLLANASTRFAVADTLKVQADVVGHHGTLEQGTLKIGDVMRAEIDAHRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L +I V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|269101880|ref|ZP_06154577.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161778|gb|EEZ40274.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 873 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 383/910 (42%), Positives = 548/910 (60%), Gaps = 54/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 3 MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT +L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKYAWEFLTTVLELP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RL +T+Y+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 EDRLLVTIYESDDEAFEIWNKEVGIPADRIVRIGDNKGAPFASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IFFD G+ I GG P E+G+R+IEIWN VFMQ+ +Q LPK S+DTGMG+ER+ Sbjct: 183 IFFDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQYNRQADGTMEPLPKPSVDTGMGIERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+FK LI+ + + G Y+ + + RV+ DH+RS ++LIADG++P+ Sbjct: 243 AAIMQGVHSNYEIDIFKTLIKDAADIIG--YDDLSNQSLRVVADHIRSCAYLIADGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ L+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGTAGSELKKQQEMVEKVLKI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRGL +L+ L +L IL+G+ FKLYDT+G P D+ D+ RG I Sbjct: 361 EEENFGRTLDRGLTILNEALDNLD-GSILDGETVFKLYDTYGFPADLTNDVARERGFT-I 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+EEQR RAR +G + ++ + T+F GY+ G Sbjct: 419 DEEGFEAAMEEQRQRAR------DAGQFGVDYNNVIKVDADTEFKGYEATDG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++ AI + GE V+ +G++ +V DQTPFYAE+GGQ GDTG Sbjct: 465 ---------------EGVIVAIYRDGEEVDALAAGEEAIIVLDQTPFYAESGGQCGDTG- 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 A+ +K H + G L+ L T+D+ R +S+NHSATHL+ Sbjct: 509 ALAAAGVAFTVADTQKFGHAIGHKGTLTEGALKVGDKLAATVDHVRRGAISLNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + PD LRFD +H + + +L+ +E VND I N + T I Sbjct: 569 HAALRKLLGEHVAQKGSLVKPDSLRFDFSHLEAVKPEQLREVERMVNDQIRLNHAIDTEI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D+VRV+S+ G S+ LCGG H TG+I L IVSE Sbjct: 629 MDIEAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHAKRTGDIGLFKIVSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG A L QDE+L A +K +VV +VE + ++L+ Sbjct: 684 GGIAAGIRRIEAVTGAAAIEALHAQDEQLAKAARLVKSDTASVVNKVEALVSHSKQLEKE 743 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K +L ++ + +I V + + D+K L+ ++D L+ ++ SGI++L Sbjct: 744 IQQLKDKLAAQEGAGLINQAQEINGVKVLIAKLDGADNKALRGMVDELKNQLSSGIVVLG 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S + K ++ VT+DL+ + A +L + A+ + GG GGGRP MAQ+GG + + A Sbjct: 804 NVS-DDKVGLIAGVTKDLIGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDASALPAA 861 Query: 889 IAGVASFLKK 898 + +++++ Sbjct: 862 LESAKAWIEE 871 >gi|257465412|ref|ZP_05629783.1| alanyl-tRNA synthetase [Actinobacillus minor 202] gi|257451072|gb|EEV25115.1| alanyl-tRNA synthetase [Actinobacillus minor 202] Length = 874 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 378/912 (41%), Positives = 542/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FFQ GH ++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFQSKGHTVVESSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ GGLP E+G+R+IE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ID+F+ LI+ ++ +K + + RVI DH+RS S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTIAELLNVKD--LDNKSLRVIADHIRSCSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRRI+RRA+ + +LG E L+P L MG A + Q + I++T Sbjct: 299 APSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+GDVAFKLYDT+G PLD+ D+ R Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGDVAFKLYDTYGFPLDLTADVCRERN- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F ++ QR RA+A S + ++ + G T FIGYD L Sbjct: 417 IVIDEAGFEAEMQAQRERAKASSNFG------VDYNNVIKVDGKTDFIGYDNL------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V + G V+ SG+ ++ D+TPFYAE GGQ+GD Sbjct: 464 ----------------TAEATVVGLFSNGNAVDVVKSGENAIIILDKTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + + D QK +F H +E G L+ + + + R + +NHSAT Sbjct: 508 SGRISTEFCQFHVVDTQKYG-QVFGHIGQIEAGELKVGDKVTAEVAAERRHSIQLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG+HV Q GS + +GLRFD + + IT +L++IE VN I +N+ VV Sbjct: 567 HLLHSALREVLGTHVMQKGSLVNENGLRFDFSQPEAITKEQLEAIERIVNAKIRENIEVV 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M E+A A GA AL G KY D VRVV + V S LCGGTHV TG+I L I Sbjct: 627 IEEMGIEEAKAKGAMALFGEKYGDVVRVVDM-----SVFSIELCGGTHVKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE ++ AG+RR+EAITG+ A + L + + A LK N+V +++++ ++ ++L Sbjct: 682 TSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKRL 741 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K + + +I VN + + + K L++++D L+ ++ S I+ Sbjct: 742 EKELQQLKEKQASQAGADLAKQAKQINGVNVVVTQLENTEPKVLRTMVDDLKNQLGSAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G + K ++++ V+ DL + A +L A + GG GGGRP MA +GG Sbjct: 802 VL-GTVADDKVNLIVGVSSDLTTQIKAGELVGEMATYV-GGKGGGRPDMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 +A+ +++ Sbjct: 860 AKALNFAQEWIQ 871 >gi|197284276|ref|YP_002150148.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227357820|ref|ZP_03842168.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906] gi|194681763|emb|CAR40964.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227161930|gb|EEI46948.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906] Length = 875 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 388/911 (42%), Positives = 543/911 (59%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G + Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEVGVPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG P E+G+RYIEIWN+VFMQF +++ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGTPEEDGDRYIEIWNIVFMQFNRKSDGTMDPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NYDIDLF+ LI++ +VT N + RVI DH+RS SFL+ DG++ Sbjct: 243 RITAVLQHVNSNYDIDLFRALIKSVAEVTNATDLANK--SLRVIADHIRSCSFLVCDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG + L+ L M A EL + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIDVMAEAGKELKNQQEIVEKVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L L + L G+ AF+LYDT+G PLD+ D+ R + Sbjct: 361 KTEEEQFARTLERGLQLLDEELEKLT-GDTLAGETAFRLYDTYGFPLDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + L + + F GYD Sbjct: 420 -VDEEGFELAMEEQRKRARE------SSGFGTDYNELIKVDSRSDFSGYDH--------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N + AI G+ V E +G++ + D+T FYAE+GGQ+GD Sbjct: 464 --------------NEQQGTINAIFHNGQTVTELKAGEEGIIFLDKTAFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G IG + ++TD QK + H V G + ID R + +NHSATH Sbjct: 510 GLLIGKDSQFEVTDTQKYGK-AIGHIGKVISGSFIVNHKINAVIDVARRDAIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS + LRFD +H + + +L+ IED VN I N PVVT Sbjct: 569 LLHAALRQVLGTHVTQKGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ EDA GA AL G KY +RVRV+++ G S+ LCGGTH + TG+I L I+ Sbjct: 629 ELMDLEDAKQKGAMALFGEKYEERVRVLTM-----GDFSTELCGGTHAARTGDIGLFRIM 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEAITG A + Q + + +A LK N+V +++ + E+YR L+ Sbjct: 684 SESGTAAGIRRIEAITGATAIESVHEQSDLISLVAHALKSDGSNLVEKIKTVQEKYRSLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S + + + ++ V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKDQQAAQESSSLGSQAKNVKGIKLLVRELNNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 L-STISDGKVSLIVGVTKDLTAKIKAGELISFVAQQI-GGKGGGRPDMAQAGGTDVEALP 861 Query: 887 QAIAGVASFLK 897 A+A V +++ Sbjct: 862 AALASVDEWVE 872 >gi|205830049|sp|Q39HB7|SYA_BURS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+G L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKIVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHVS +G+I IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRSGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L +I V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAVES-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|167570231|ref|ZP_02363105.1| alanyl-tRNA synthetase [Burkholderia oklahomensis C6786] Length = 874 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 377/912 (41%), Positives = 531/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A +IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGIGDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + + T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQGLD-------YSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL KY D VRV+ + S LCGGTHV TG+I IV Sbjct: 629 RVMPYDEAVKGGAMALFDEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L L ++ V+ ++ + D+K L+ +D L+ K+++ I+ Sbjct: 743 KELAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAVD-GGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 AALAGVKGWVEE 872 >gi|205830050|sp|Q1BX19|SYA_BURCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 382/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++A V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 GALAGVKGWVEE 872 >gi|107022482|ref|YP_620809.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] gi|105892671|gb|ABF75836.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] Length = 897 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 382/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 24 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 84 TTAQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 382 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L+ Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++A V ++ + D+K L+ +D L+ K++S I+ Sbjct: 766 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 884 GALAGVKGWVEE 895 >gi|171321470|ref|ZP_02910415.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5] gi|171093253|gb|EDT38456.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5] Length = 874 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 378/911 (41%), Positives = 534/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRFVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 GALAGVKGWVE 871 >gi|183596274|ref|ZP_02958302.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827] gi|188023874|gb|EDU61914.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827] Length = 876 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 556/910 (61%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W K G+ D+IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYDIWHKEVGIPVDRIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDID+F+ LI A+ + TG + + RVI DH+RS +FL++DG++ Sbjct: 243 RIAAVLQHVNSNYDIDIFQELIAAAAKATGSND--LSNKSLRVIADHIRSCAFLVSDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + +E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLINVMGAAADELARQQSTVEKVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ F+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLQLLDEELAALK-GDTLDGETVFRLYDTYGFPMDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E+QR RAR S + SL + ++F GY Sbjct: 420 -VDEEGFERAMEDQRRRARE------SSGFGTDYNSLIKVEKHSEFSGY----------- 461 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N + + AI + G+ V+ +G++ V+ D+T FYAE+GGQ+GDT Sbjct: 462 ------------AYNEQLATITAIYKNGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D +TD QK H VE G L + ID + R + +NHSATH Sbjct: 510 GLLRNDSGSFIVTDTQKYG-QAIGHIGKVESGSLVINHRIDAKIDVERRDAIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + LRFD +H + +T+A+L+ +ED VN I +N P+ T Sbjct: 569 LLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTAAQLREVEDIVNAQIRKNTPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY +RVRV+S+ GG S LCGGTH S TG+I L I+ Sbjct: 629 ELMDLESAKAKGAMALFGEKYEERVRVLSM----GGDFSIELCGGTHASRTGDIGLFRIL 684 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG+ A + Q E+L ++A LK ++V +V+ E+ R+L+ Sbjct: 685 SESGTAAGVRRIEATTGESALESVHSQSEQLNAIAHLLKGDMSSLVEKVKSALEKSRQLE 744 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ + K L++++D L+ +++S II+ Sbjct: 745 KEILQLKDQQASQESASLSSKAKDIKGVKLLVSQLNNTEPKLLRTMVDDLKNQLKSAIIV 804 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+++ VT DL + A DL A+ + GG GGGRP MAQ+GG + + Sbjct: 805 L-STTSGDKVSIIVGVTNDLTAKIKAGDLISYVAQQV-GGKGGGRPDMAQAGGTDVSALP 862 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 863 TAMASVEDWV 872 >gi|315635122|ref|ZP_07890400.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393] gi|315476084|gb|EFU66838.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393] Length = 874 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 554/912 (60%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHYGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + RL++TVY+ D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKERLWVTVYETDDEAYNIWHKEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+FK LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLANK--SLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG TE L+P L M A E+ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIDVMAEAGEEVKKQQATVEKF 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+++ + +L+G+VAFKLYDT+G PLD+ D+ RG Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANVK-ENVLSGEVAFKLYDTYGFPLDLTADVCRERG- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID + F + +E QR RA++ S + S+ G T+F GY Sbjct: 417 IAIDEVGFEREMELQRVRAQSASQFGM------DYNSVIRVDGTTRFEGYTESETL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ +G VE +GQ V+ D TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFHEGNPVESISAGQSAVVILDNTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G+G + D QK +F H + +G L S+ +D R+++S+NHSAT Sbjct: 508 IGRLEGNGFCFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDDVRRQRISLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ LRFD + I+ A+L +E VN + N P+ Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDTLLRFDFAQHEAISKAQLAEVERIVNQQVRANNPIQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM E A A GA AL G KY+++VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+E+++ AGIRRIEAITG+ A L Q L A LK +V ++ + ++Y+K+ Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSAELLKSDVNSVTDKISLLQDKYKKV 741 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S +I V+ + + +++K L++++D+L+ ++ S ++ Sbjct: 742 EKELQTLKEKAALQAGNDLAKSAVEINGVSVIVQQLDGIEAKSLRAMVDSLKNQLGSAVV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + ++K ++++ VT+DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 VFASAL-DEKVNLIVGVTQDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTEPQNI 859 Query: 886 DQAIAGVASFLK 897 ++A++ + +LK Sbjct: 860 NKALSVCSDWLK 871 >gi|317049269|ref|YP_004116917.1| alanyl-tRNA synthetase [Pantoea sp. At-9b] gi|316950886|gb|ADU70361.1| alanyl-tRNA synthetase [Pantoea sp. At-9b] Length = 875 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 547/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT + F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWELLTGEQWFK 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKDRLWVTVYETDDEAYDIWANDIGIPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF LI++ VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFAKLIKSVADVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA +L + + +E L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIEVMGSAGEDLQRQQAQVENVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL+RGL LLD L+ L + L+G+ F+LYDT G P+D+ D+ R L Sbjct: 361 KAEEEQFAKTLERGLALLDEELAKLQ-GDTLDGETVFRLYDTFGFPVDLTADVCRERDLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F A+E+QR RAR + ++ A+ F GYD L Sbjct: 420 -IDEAGFEVAMEQQRQRAREA------SGFGADYNNVIRIDSASAFKGYDQL-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V+A+ G+ V+ +GQ VV D+TPFY E+GGQ+GDT Sbjct: 465 ---------------ALASTVQALFVDGQQVDHVSAGQDAVVVLDETPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK H + +G LR L +D + R ++ +NHSATH Sbjct: 510 GVLAGNNAEFSVQDTQKYG-QAIGHIGKLTQGQLRVGDRLNAQVDEERRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NL V T Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLAVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY+ RVRV+S+ G S+ LCGGTH + TG+I L I Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDQRVRVLSM-----GDFSTELCGGTHAARTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + Q +L +A +K + N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQVNAQSHQLHDIAQLVKANSSNLNEKVRGLVDHVRALE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + Q ++ + + +S V+ K L+++MD L+ ++ S II+ Sbjct: 744 KELQQLRDQQAAQESASLSSKAIDVKGTKLLVSELSNVEPKMLRTMMDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ VT+DL DR A +L A + GG GGGRP MAQ+GG N Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELVGELAAQV-GGKGGGRPDMAQAGGTNPQALA 861 Query: 887 QAIAGVASFL 896 A+AGV ++ Sbjct: 862 GALAGVQDWV 871 >gi|240949596|ref|ZP_04753931.1| alanyl-tRNA synthetase [Actinobacillus minor NM305] gi|240295854|gb|EER46530.1| alanyl-tRNA synthetase [Actinobacillus minor NM305] Length = 874 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FFQ GH ++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFQSKGHTVVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ GGLP E+G+R+IE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ID+F+ LI+ ++ +K + + RVI DH+RS S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTVAELLNVKD--LDNKSLRVIADHIRSCSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + +LG E L+P L MG A + Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+GDVAFKLYDT+G PLD+ D+ R Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NKTLSGDVAFKLYDTYGFPLDLTADVCRERN- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F ++ QR RA+A S + ++ + G T FIGYD L Sbjct: 417 IAIDEAGFEAEMQAQRERAKASSNFG------VDYNNVIKVDGKTNFIGYDNL------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V + G V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 464 ----------------TAEATVVGLFSNGNAVDVIKSGENAIIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + + D QK +F H +E G L+ + + + R + +NHSAT Sbjct: 508 SGRISTEFCQFNVADTQKYG-QVFGHIGQLEAGELKVGDKVTAEVAAERRHSIQLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LGSHV Q GS + GLRFD + + IT +L+ IE VN I +N+ VV Sbjct: 567 HLLHSALRKVLGSHVMQKGSLVNEKGLRFDFSQPEAITKEQLEEIERIVNAKIRENIQVV 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M E+A A GA AL G KY D VRVV + V S LCGGTHV TG+I L + Sbjct: 627 IEEMGIEEAKAKGAMALFGEKYGDIVRVVDM-----SVFSIELCGGTHVKRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE ++ AG+RR+EAITG+ A + L + + A LK N+V +++++ ++ ++L Sbjct: 682 TSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKRL 741 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K + + +I VN + + + K L++++D L+ ++ S I+ Sbjct: 742 EKELQQLKEKQASQAGADLAKQAKQINGVNVVVTQLENAEPKVLRTMVDDLKNQLGSAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G ++K ++++ V+ DL + A +L AK GG GGGRP MA +GG Sbjct: 802 VL-GTVVDEKVNLIVGVSSDLTTQIKAGELVGEMAK-CVGGKGGGRPDMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 +A+ +++ Sbjct: 860 AKALNFAQEWIQ 871 >gi|209884575|ref|YP_002288432.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5] gi|209872771|gb|ACI92567.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5] Length = 909 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 477/908 (52%), Positives = 619/908 (68%), Gaps = 38/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR++FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 22 MSGVNEIRSSFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKLPYQR 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L Sbjct: 82 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKEFGL 141 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EA LWKKI+GL K+IRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 142 PKDRLLVTVFSEDDEAASLWKKIAGLPDSKVIRIATSDNFWQMGDTGPCGPCSEIFFDHG 201 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +PGG P E+G+R+IEIWNLVFMQFEQ R LP SIDTGMGLERMA VLQ Sbjct: 202 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGGVRTPLPHPSIDTGMGLERMAAVLQG 261 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF LI+A +TG G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 262 KHDNYEIDLFVALIRAISDLTGTDPHGPQKASLRVIADHLRASSFLIADGVLPSNEGRGY 321 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPEL++A+ L+EETL+ E+ RF Sbjct: 322 VLRRIMRRAMRHAQLLGAKEPLMYRLVWALVREMGQAYPELVRAESLVEETLKLEETRFR 381 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L ++ +G+ AF LYDT+G PLD+ QD L RG+ +D+ SF Sbjct: 382 KTLDRGLAILDEKSASLKPGDMFDGETAFTLYDTYGFPLDLTQDALRTRGIH-VDLASFT 440 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G EK+WF L E+ GAT+F+GYD Sbjct: 441 DAMEQQKAKARASWAGSGDAAAEKVWFPLHEELGATEFLGYD------------------ 482 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G +V+ +G VV +QTPFY E+GGQ+GDTG GDG Sbjct: 483 -----TEIAEGVVTALVKDGAVVDSLNAGDAAAVVLNQTPFYGESGGQVGDTGILTGDGG 537 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R ++TD QKKA +FVH +E+G L+ +L L +D+ R + NHSATHLLH AL Sbjct: 538 VRFRVTDTQKKAGDLFVHVGTLEQGALKKGAALQLEVDHTRRGAIRANHSATHLLHEALR 597 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS ++P+ LRFD H+KPI + EL+ IED NDI+ QN V TR+M +D Sbjct: 598 QVLGDHIAQRGSLVSPERLRFDFAHTKPIAADELRRIEDIANDIVLQNSEVTTRLMGLDD 657 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716 A +SGA AL G KY D VRVVS+ G S LCGGTHV TG+I L+ I ES++ Sbjct: 658 ARSSGARALFGEKYGDEVRVVSMGQTSGNALGWSVELCGGTHVKRTGDIGLVSITGESAV 717 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+TG+ AR E K+ A+ LK + ++ RV + EE +KL+ + Sbjct: 718 ASGVRRIEALTGRAARHAANHSIETAKAAAAELKTTLEDMPARVAALVEERKKLERDLSD 777 Query: 777 RKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L + + + DV ++ + ++ K+LKS+ D +K++ SG++ Sbjct: 778 ARKKLAMGGGAGGNGSTAASDVRNVGDVKLLARAVQGIEVKDLKSLADQGKKQLGSGVVA 837 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LV S++ KASV++ VT DL RFNAVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD Sbjct: 838 LVATSEDGKASVVVGVTPDLTSRFNAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 897 Query: 887 QAIAGVAS 894 A+ + + Sbjct: 898 AALKAIEA 905 >gi|238027796|ref|YP_002912027.1| alanyl-tRNA synthetase [Burkholderia glumae BGR1] gi|237876990|gb|ACR29323.1| Alanyl-tRNA synthetase [Burkholderia glumae BGR1] Length = 874 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 379/910 (41%), Positives = 536/910 (58%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI +W+LLT + L Sbjct: 61 TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYSWELLTSVYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 KEKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK SIDTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEGRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEERFLETIEHGMTILEAALAELDAKGGKLLDGELAFKLHDTYGFPLDLTADVCREREVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + + T F GY+ L Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQGLD-------YSGAKTTFHGYEKLALDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ G V EA +G++ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKIVALYVGGTAVNEAKAGEQAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH VE+G L+ L +D + R + NHSATH Sbjct: 509 GTLANAAARFAVEDTLKVQADVIGHHGTVEQGALKVGDVLRAEVDAERRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS + + RFD H+ P++ E++ +E VN I N P + Sbjct: 569 LMHKALREVLGGHVQQKGSLVDAEKTRFDFAHNAPLSDEEIRRVEAIVNAEILANAPGII 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R M+ ++A+ GA AL G KY D VRV+ + S LCGGTHVS TG+I IV Sbjct: 629 RNMSYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D +L + A+ LK + R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQELDARLSTAAAMLKAQPAELTQRIAQVQDQLKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L + + ++ + DSK L+ D L+ K++ ++ Sbjct: 743 KELAALKSRLASSQGDELAQQAVDVKGLRVLAATLEGADSKTLRETADKLKDKLKHAAVV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860 Query: 887 QAIAGVASFL 896 +A+AGVA+++ Sbjct: 861 EALAGVAAWV 870 >gi|109899322|ref|YP_662577.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] gi|123360521|sp|Q15RG5|SYA_PSEA6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|109701603|gb|ABG41523.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] Length = 865 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 388/903 (42%), Positives = 560/903 (62%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL FF GH+ + SSSL+P +DPTL+FTN+GM FK++F G E+ Y Sbjct: 3 KSTAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI AW LT+ L Sbjct: 63 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHQAIGYAWSFLTEVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L +TVY ED+EAF +W G+ +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 123 KDKLLVTVYSEDDEAFDIWHNDIGIPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 182 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS E+G+R+IEIWNLVFMQF +Q + LPK SIDTGMGLER++ ++Q Sbjct: 183 HIWGGPPGSPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAIIQNV 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID+F++LI+A+ ++ G+ + RV+ DH+RS SFLI+DG++P+NEGRGYV Sbjct: 243 HSNYEIDIFQNLIKATAKIVGVT--SLEDKSLRVVADHIRSCSFLISDGVMPSNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG L+ AL TEMG AYPEL + + +IE+ LR E+E+F + Sbjct: 301 LRRIIRRAVRHGNKLGANGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSR 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG+++L+ L+ L +++ GDV FKLYDT+G P D+ D+ +GL+ ID F Q Sbjct: 361 TLERGMLILNDALNELE-GKVVPGDVVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQ 418 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ EQR RA+ + + + F+GY+ Sbjct: 419 AMAEQRKRAQKA------SNFDVDYNEQLRSDLESIFVGYEH------------------ 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 ++ + + +G+ V E +G + V+ D++PFYAEAGGQ GDTG + D Sbjct: 455 -----EDNTATITELFFKGQSVNELAAGAEGTVILDESPFYAEAGGQAGDTGTLVTDAGG 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + D K + I A + + S++ ++ R + +NHSATHL+H AL +I Sbjct: 510 FSVKDTVKLGKAIAHKGAALSKLS--VGDSVLAKVNGVRRHAIKLNHSATHLMHAALKSI 567 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + D LRFD +H + ++ ++ ++E VN+ I N P+ T++M E A Sbjct: 568 LGEHVNQKGSLVQADRLRFDFSHFEAMSKEQVLAVETMVNEQILANHPLQTQLMGLEQAK 627 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY+D VRVVS+ G S LCGGTHV TG+I L I+SES I +G+ Sbjct: 628 EAGAMALFGEKYDDDVRVVSM-----GSFSMELCGGTHVERTGDIGLFKIISESGIASGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A H+ Q +L S+++ LK + RV ++ E+ + L+ AK K + Sbjct: 683 RRIEAVTGLTALQHVQQQTFELSSISAVLKTDVNSAGERVVQLIEQTKTLEKEVAKLKQE 742 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + S ++I V +S+ + ++S L++++D L+ +I SG+I+L G++ K Sbjct: 743 IANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GLATGDK 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+DL + A +L A+ + GG GGGRP MAQ+GG D AIA V+ + Sbjct: 802 VSLIAGVTKDLTHKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDTAIASVSEW 860 Query: 896 LKK 898 L++ Sbjct: 861 LQE 863 >gi|330816605|ref|YP_004360310.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3] gi|327368998|gb|AEA60354.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3] Length = 874 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 379/910 (41%), Positives = 533/910 (58%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI +W+LLT + L Sbjct: 61 TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYSWELLTSVYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY +D+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 KEKLWVTVYHDDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK SIDTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGVADLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGGAYPELKEAEGRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFLETIEHGMTILDAALAELDAKGAKQLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEDIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ G V++A +G++ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKIVALYVGGTAVQQAQAGEQAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH VE+G L+ +L ID R + NHS TH Sbjct: 509 GVLANAATRFAVEDTLKVQADVIGHHGTVEQGTLKVGDTLRAEIDAARRARTERNHSVTH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P++ E++ +E VN I N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMSDDEIRRVEAIVNAEILANSPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I IV Sbjct: 629 SNMSYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVRRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D +L + AS LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNALRYVQELDARLNTAASMLKAQPAELTQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L + V ++ + DSK L+ +D L+ K++ ++ Sbjct: 743 KELAALKSKLASSQGDELAQQAVDVKGVQVLAATLDGADSKTLRETVDKLKDKLKHAAVV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFL 896 A+AGV +++ Sbjct: 861 AALAGVQAWV 870 >gi|307249853|ref|ZP_07531828.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858107|gb|EFM90188.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 874 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFTVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKVKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|119472239|ref|ZP_01614418.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7] gi|119445057|gb|EAW26352.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7] Length = 866 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 396/903 (43%), Positives = 543/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y Sbjct: 4 MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ L Sbjct: 64 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIKFAWEFLTEVVKLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 Q +L +T+Y +DEEAF+ W K GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 QEKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS E+G+R+IEIWNLVFMQ+ +QN LPK S+DTGMGLER++ +LQ Sbjct: 184 HIWGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERISAILQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYV Sbjct: 244 HSNYEIDLFQGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGK Sbjct: 302 LRRIIRRAVRHGNKLGAQGAFFFKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL +L+ LS L +++ GD+ FKLYDT+G P D+ D+ R + ID F + Sbjct: 362 TLERGLAILEESLSDLK-GDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHKGFEE 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + QR A+ G + + T F GYD Sbjct: 420 CMAVQRKTAQQA------GKFGADYNEQLKSDKHTDFKGYDST----------------- 456 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S+ V + GE V+ GQ+ V+ D+TPFYAE+GGQ GDTG G Sbjct: 457 ------HYSATVVEVFAGGEAVQLLEDGQEGIVILDRTPFYAESGGQTGDTGTITVAGGE 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +T+ K H +G + + TID R + NH+ATH+LH AL + Sbjct: 511 FNVTNTTKLGNAF--AHHGTVQGRIGVNDKVDATIDDARRENIKKNHTATHILHEALRQL 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HVSQ GS + D LRFD +H + +T EL+ IE VND I +N + T +M +DA Sbjct: 569 LGEHVSQKGSLVQADRLRFDFSHFEAVTKDELRDIERVVNDEIRRNFALNTELMAIDDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+ Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A +++ Q+++L +A+ +K +V+ +V + E+ + L+ A+ + Sbjct: 684 RRIEAVTGADAVAYVSEQEQQLSDVAALVKGDSASVLEKVTALLEKSKGLEKQIAQLNDK 743 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S +I V + + +SK L+ ++D L+ KI SG+I L G++ K Sbjct: 744 LASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+DL + A +L A + GG GGGRP MAQ+GG A+ V ++ Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPQNLAAALDSVTAW 861 Query: 896 LKK 898 L + Sbjct: 862 LTE 864 >gi|304391435|ref|ZP_07373377.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130] gi|303295664|gb|EFL90022.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130] Length = 884 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 468/906 (51%), Positives = 609/906 (67%), Gaps = 34/906 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F+KNGH + SS L+P NDPTLMFT +GMV FKN+FTG E Y Sbjct: 1 MSGVNDIRSTFLSYFEKNGHAAVDSSPLVPRNDPTLMFTAAGMVQFKNLFTGLETRNYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+E+ + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEFAWNLLTEEYGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +TVY +D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DASRLLVTVYHDDDEAFDLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQFEQ ER LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFEQVTVDERVNLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLFK LI ASEQ TG+ + N +HRVI DHLR+S FLIADG+LP NEGRGY Sbjct: 241 THDNYEIDLFKALISASEQATGVGSDDNTRASHRVIADHLRASCFLIADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG A+PEL + + L+ ETL E+ RF Sbjct: 301 VLRRIMRRAMRHASLLGAQDPLMYRLVPALVAQMGEAFPELRRTQSLMTETLNLEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LLD + L + L+G VAFKLYDT+G PLD+ QD L R + +D ++ Sbjct: 361 KTLTRGLDLLDTASADLKAGDALDGRVAFKLYDTYGFPLDLTQDALRRRDIT-VDTDEYS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQ++ ARA G G + IWF L+EK+GAT+F+GY+ Sbjct: 420 TAMEEQKAVARASWAGAGGAADDAIWFKLREKHGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V AI+Q G V A G +V V+ +QTPFYAE+GGQ+GDTG + Sbjct: 462 -----TEKAEGSVLAILQDGAEVSTAKKGDEVSVILNQTPFYAESGGQMGDTGTLVVGET 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L ITD +K+ +G+FVH V+ G L+ L ID+ R +L NHSATHL+H AL Sbjct: 517 KLTITDTKKRGDGLFVHMGTVDSGTLKVGDGASLEIDHARRSKLRSNHSATHLVHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HVSQ GS + P+ LRFD +HSKP+ + E++ IE N+ + QN V T +M +DA Sbjct: 577 TLGDHVSQKGSLVAPERLRFDFSHSKPVETEEMRRIEAMANEYVLQNSQVSTTLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 I GA A G KY D VRVVS+ + S LCGGTHV +TG+I L+ +V ES+ Sbjct: 637 IELGAQAQFGEKYGDEVRVVSMGKVGEGNEAKAWSLELCGGTHVKNTGDIGLVTVVGESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TGQ AR +L+ QDE L+S A+ LK + +V RV + +E +KL+ A Sbjct: 697 VSSGVRRIEALTGQAAREYLLQQDELLRSTAAKLKTTPADVPTRVAALIDERKKLERELA 756 Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K QL + + + I V F+ ++ V ++LK ++D + +I SG++ + Sbjct: 757 EAKKQLALGVDGGTEAAAEDIGGVQFVGRVLQGVSPRDLKGLVDEEKTRIGSGVVAIAAN 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +++ K +V++ VT+DL DRF+AV L R ++ LGG GGGGRP MAQ+GGP+G D A+ Sbjct: 817 NEDGKGAVVVGVTKDLTDRFDAVVLVRAGSEALGGKGGGGRPDMAQAGGPDGANVDAALD 876 Query: 891 GVASFL 896 V + L Sbjct: 877 AVRAAL 882 >gi|300718056|ref|YP_003742859.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661] gi|299063892|emb|CAX61012.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661] Length = 875 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 394/910 (43%), Positives = 549/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTGAQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWEKEVGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS E+G+R+IEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRFIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF LI + +VTG + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVLQHVNSNYEIDLFARLIASVAEVTGATD--LTSKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG L+ L + MGSA EL + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAQGSFFWKLVGPLISVMGSAGEELASQQSQVEQIL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL+RGL LLD L L + L+G+ F+LYDT G P D+ D+ R L Sbjct: 361 KTEEEQFAKTLERGLALLDEELEKLQ-GDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F +A+E+QR RAR + + + A+ F GY+ L Sbjct: 420 -IDEAGFEKAMEQQRQRAREA------SGFGADYSKVIQIDAASAFKGYEQLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V AI G+ E V+GQ+ +V D+TPFY E+GGQ+GDT Sbjct: 466 ----------------LNSTVTAIFVDGKPATEIVAGQEGVIVLDETPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D + D QK H + G +R L +D R ++ +NHSATH Sbjct: 510 GELKSDAATFTVNDTQKYG-QAIGHTGTLAAGQIRIGDRLSAQVDQARRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + E++ +E+ VN + +NL + T Sbjct: 569 LLHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMKPEEIRQVEEIVNAQVRRNLAIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM E A + GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMELEAAKSHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + Q E+L+ +A +K + N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALGLMYAQSEQLQEIAHLIKANNSNLNEKVRAMIDHVRGLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I + +S V+ K L++++D L+ +++S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSKAIEIKGTRLLVSELSNVEPKMLRTMVDELKNQLKSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELVGELAQQV-GGKGGGRPDMAQAGGTDAQALP 861 Query: 887 QAIAGVASFL 896 A+AGV S++ Sbjct: 862 AALAGVESWV 871 >gi|148828002|ref|YP_001292755.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG] gi|205830061|sp|A5UHW6|SYA_HAEIG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148719244|gb|ABR00372.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG] Length = 874 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 387/913 (42%), Positives = 547/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I +KK ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|145630561|ref|ZP_01786341.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021] gi|144983951|gb|EDJ91393.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021] Length = 874 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 385/913 (42%), Positives = 547/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGTTD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYA++GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAKSGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + S+NHSAT Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRLHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|54310165|ref|YP_131185.1| alanyl-tRNA synthetase [Photobacterium profundum SS9] gi|46914606|emb|CAG21383.1| putative alanyl-tRNA synthetase [Photobacterium profundum SS9] Length = 906 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 380/910 (41%), Positives = 533/910 (58%), Gaps = 54/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 36 MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 95 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Sbjct: 96 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 155 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 Q RL +T+Y+ D+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPCSE Sbjct: 156 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSE 215 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 216 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 275 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+ S +V G YE + + RV+ DH+RS +FLI DG++P+ Sbjct: 276 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 333 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+ L MG+A EL + + L+E+ L+ Sbjct: 334 NEGRGYVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKI 393 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++ FG+TLDRGL +L+ L +L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 394 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 451 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN A+E QR RAR G + + T+F GY Sbjct: 452 DEEGFNNAMEAQRQRAREA------GKFGVDYNESIKVDVNTEFCGYT------------ 493 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + A+ + GE V+ ++G+ ++ D TPFYAE+GGQ GD G Sbjct: 494 -----------GTAAQSSIVALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 542 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++D QK H + +G L L +D R +++NHSATHLL Sbjct: 543 LTAENTVFNVSDTQKFGA-AIGHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLL 601 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + PD LRFD ++ + + +L+ IE VN+ I N + T I Sbjct: 602 HSALRNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 661 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H +TG+I L I SE Sbjct: 662 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 716 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG A L Q+ L AS +K +V +V + ++L+ Sbjct: 717 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 776 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +L ++ + +I V + + D+K L+ ++D ++ K+ SGI++L Sbjct: 777 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 836 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S + K +++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A Sbjct: 837 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 894 Query: 889 IAGVASFLKK 898 + V +L + Sbjct: 895 LESVTPWLTE 904 >gi|148826541|ref|YP_001291294.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE] gi|229845865|ref|ZP_04465977.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1] gi|205830060|sp|A5UDR0|SYA_HAEIE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148716701|gb|ABQ98911.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE] gi|229810869|gb|EEP46586.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 388/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKSAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSIIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLTQIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEAITGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAITGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVITQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|307256675|ref|ZP_07538454.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864723|gb|EFM96627.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRKNIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|165976064|ref|YP_001651657.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|205829970|sp|B0BNS8|SYA_ACTPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|165876165|gb|ABY69213.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFTVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|134295482|ref|YP_001119217.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4] gi|205830008|sp|A4JDM9|SYA_BURVG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134138639|gb|ABO54382.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 537/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT N + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTETAD--LNNNSLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGSSVGEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVQRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVFVLAATLDGADAKTLRETVDKLKYKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 GALAGVKGWIE 871 >gi|167563044|ref|ZP_02355960.1| alanyl-tRNA synthetase [Burkholderia oklahomensis EO147] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 532/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A +IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGIGDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + + T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQGLD-------YSGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A H+ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRHVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L L ++ V+ ++ + D+K L+ +D L+ K+++ I+ Sbjct: 743 KELAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAVD-GGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 AALAGVKGWVEE 872 >gi|145628290|ref|ZP_01784091.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21] gi|145638384|ref|ZP_01793994.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII] gi|144980065|gb|EDJ89724.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21] gi|145272713|gb|EDK12620.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII] gi|309751524|gb|ADO81508.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2866] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 385/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LSNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + D++L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQVK-DDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFHDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNTIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|59798539|sp|Q6LMU3|SYA_PHOPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 873 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 380/910 (41%), Positives = 533/910 (58%), Gaps = 54/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 Q RL +T+Y+ D+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPCSE Sbjct: 123 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+ S +V G YE + + RV+ DH+RS +FLI DG++P+ Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+ L MG+A EL + + L+E+ L+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++ FG+TLDRGL +L+ L +L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 361 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN A+E QR RAR G + + T+F GY Sbjct: 419 DEEGFNNAMEAQRQRAREA------GKFGVDYNESIKVDVNTEFCGYT------------ 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + A+ + GE V+ ++G+ ++ D TPFYAE+GGQ GD G Sbjct: 461 -----------GTAAQSSIVALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++D QK H + +G L L +D R +++NHSATHLL Sbjct: 510 LTAENTVFNVSDTQKFGA-AIGHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + PD LRFD ++ + + +L+ IE VN+ I N + T I Sbjct: 569 HSALRNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H +TG+I L I SE Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG A L Q+ L AS +K +V +V + ++L+ Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +L ++ + +I V + + D+K L+ ++D ++ K+ SGI++L Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S + K +++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861 Query: 889 IAGVASFLKK 898 + V +L + Sbjct: 862 LESVTPWLTE 871 >gi|307254463|ref|ZP_07536300.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258922|ref|ZP_07540653.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862604|gb|EFM94561.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866946|gb|EFM98803.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + D QK +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTGICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|145632173|ref|ZP_01787908.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655] gi|144987080|gb|EDJ93610.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 387/913 (42%), Positives = 549/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LSNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKILANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|296158159|ref|ZP_06840991.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1] gi|295891495|gb|EFG71281.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1] Length = 874 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 377/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++ L +MG+AYPEL A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKDAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+G L+ L + L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA + L+ T F GYD + Sbjct: 419 -VDEAAFDEAMTRQREQARAAGKFKMAQG-------LEYSGEKTTFHGYDEIVFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V++A GQ+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVIALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T +++ +E+ VN + N P + Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M+ ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMSFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ ++ V+ ++ + D K L+ +D L+ K++S I+ Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|303253696|ref|ZP_07339833.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247624|ref|ZP_07529667.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647421|gb|EFL77640.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855894|gb|EFM88054.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 874 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|146341851|ref|YP_001206899.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278] gi|205829995|sp|A4YXQ6|SYA_BRASO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146194657|emb|CAL78682.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278] Length = 891 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 464/896 (51%), Positives = 606/896 (67%), Gaps = 39/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI +DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+E +G+R+IEIWNLVFMQ+EQ R LPK SIDTG GLER+A VLQ Sbjct: 181 DKIWGGPPGSAEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A +T +G + RVI DHLR+SSFLI+DG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPELI+A+ LI+ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEGLIKETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L K ++ +GDVAF LYDT+G PLD+ QD L +RG +D SF Sbjct: 361 KTLERGLAILDEKSASLSKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-ISVDQASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++ARA G G TE +WF L+EK GAT+F+GY+ Sbjct: 420 DAMERQKAKARAAWAGSGEAATETVWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V+ +G+ +V +QTPFY E+GGQ+GDTG G+G+ Sbjct: 462 -----TETAEGAVTALVKDGAEVDSLKAGESGAIVLNQTPFYGESGGQVGDTGVLTGEGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R++ITD QKKA +F H VE+G L+ L L +D+ R + NHSATH+LH AL Sbjct: 517 RVRITDTQKKAGDLFAHIGTVEQGTLKLGTPLQLDVDHIRRSAIRANHSATHILHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS ++PD LRFD H KPIT+ EL +ED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFVHPKPITAEELARVEDIANDVVLENAEVTTRLMGLDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ + SE Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDHGNNAMGWSVELCGGTHVKRTGDIGLIAVTSE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+T + AR+H K+ A+ L+ + V R+ + EE +KL+ Sbjct: 697 SAVASGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARITALMEERKKLERE 756 Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + +L + ++A + M+ + V+ K+LKS++D +K++ SG++ Sbjct: 757 LSDARKKLAMGGGAAAGGAAAGIREVAGIKLMARAVDGVEVKDLKSLVDEAKKQLGSGVV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +VG S++ KA V++ VT DL RFNAV+L R +++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 AIVGRSEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGPD 872 >gi|307245509|ref|ZP_07527596.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853568|gb|EFM85786.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 874 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDKAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + D QK +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTGICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|53729167|ref|ZP_00134001.2| COG0013: Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208134|ref|YP_001053359.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20] gi|205829968|sp|A3N018|SYA_ACTP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126096926|gb|ABN73754.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 874 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 378/912 (41%), Positives = 542/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQT FYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTSFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|229844682|ref|ZP_04464821.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1] gi|229812396|gb|EEP48086.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1] Length = 874 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 387/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI+ + ++ G + + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIEKTAEIVGATD--LSNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|322514279|ref|ZP_08067338.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976] gi|322119833|gb|EFX91853.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976] Length = 874 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 374/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSLQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ GGLP E+G+RYIE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDTFWGGLPGTPEEDGDRYIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEILTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMSAQRERAKASSNFG------TDYSNVIKVDGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIHSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + ++D QK +F H + G L + ++ R+ ++ NHSAT Sbjct: 508 NGLISTEICEFTVSDTQKYG-QVFGHVGQLTSGSLAIGDKVTAHVEINRRQAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ D LRFD + + IT A+L+ IE VN I +N+ VV Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSEDALRFDFSQPEAITKAQLEEIERIVNRNIRENIQVV 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TGEI L + Sbjct: 627 IETMDIESAKQKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQHTGEIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AG+RR+EA+TG++A L Q ++ A LK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGVRRVEAVTGEKAMDWLHNQQRVIQQSAELLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K + + S +I VN + + V++K L++++D L+ + ++ I+ Sbjct: 742 EKELQQLKDKFAAQAGSELAKQASQINGVNVIVQKLEGVETKSLRTMVDDLKNQFENAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + ++ + K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VFGSVA-DDKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQHL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DSALKFAQEWIQ 871 >gi|190149963|ref|YP_001968488.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263291|ref|ZP_07544909.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|205829969|sp|B3H177|SYA_ACTP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|189915094|gb|ACE61346.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871353|gb|EFN03079.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 874 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------ADYNNVIKVEGQTDFIGYDNL------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|90423082|ref|YP_531452.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] gi|122476792|sp|Q218Q3|SYA_RHOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|90105096|gb|ABD87133.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] Length = 890 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 468/912 (51%), Positives = 627/912 (68%), Gaps = 40/912 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 1 MSGVNEIRSAFLNYFGKDGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PKERLLVTVFSEDDEAFALWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R+IEIWNLVFMQF+Q +R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIPGGPPGSPEEDGDRFIEIWNLVFMQFDQIAPGQRNPLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF+ LI+A ++TG +G + + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFQALIRAIAELTGADPKGEHKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG TEPLM L+ AL EMG AYPEL++A+ +IEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHGQLLGATEPLMWRLVWALVREMGQAYPELVRAEPMIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL++LD S L K ++ +G+ AF LYDT+G PLD+ QD L RG +DI SF Sbjct: 361 KTLDRGLIILDEKSSTLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-ISVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WF L+E+ GAT+F+GY+ Sbjct: 420 DAMDRQRAKARASWAGSGDTATETVWFGLREQLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G+ V++ G+ +V +QTPFYAE+GGQ+GDTG G+G+ Sbjct: 462 -----TETAEGVVAALVKDGQKVDQLKVGEAGAIVLNQTPFYAESGGQVGDTGVMTGEGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKKA +FVH VE+G L + +L+L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTETQKKAHDLFVHLGTVEQGTLTPDTALLLEVDHTRRSSIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + D LRFD H KPI++ EL+ +ED N+++ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSLVAEDRLRFDFVHQKPISADELRRVEDIANEVVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVV++ + S LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVTMGKSARQHGSNALGWSVELCGGTHVRRTGDIGLISITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG+ AR + K+ A+ L+ S ++ RV + +E +KL+ Sbjct: 697 SAVASGVRRIEALTGRFARQSANAAIDTAKATAAELRTSVDDMPARVAALMDERKKLERE 756 Query: 774 HAKRKLQL---------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A+ + +L + ++ V ++ + ++ K+LKS++D +K++ SG+ Sbjct: 757 LAEARKKLAMGGGGAAAANGEAGVREVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I LV S + K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 IALVATSADGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876 Query: 885 ADQAIAGVASFL 896 A A+ +A + Sbjct: 877 AQAALDAIAEAI 888 >gi|303249632|ref|ZP_07335837.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252204|ref|ZP_07534102.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651444|gb|EFL81595.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860348|gb|EFM92363.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 874 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------ADYNNVIKVEGQTDFIGYDNL------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|91784488|ref|YP_559694.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400] gi|122970272|sp|Q13W97|SYA_BURXL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91688442|gb|ABE31642.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400] Length = 874 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 377/911 (41%), Positives = 540/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++ L +MG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+G L+ L + L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA + L+ T F GYD + Sbjct: 419 -VDEAAFDEAMTRQREQARAAGKFKMAQG-------LEYSGEKTTFHGYDEVVFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V++A GQ+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVIALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H+ P+T +++ +E+ VN + N P + Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M+ ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMSFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ ++ V+ ++ + D K L+ +D L+ K++S I+ Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LASV-EGGKVSLIAGVTADASRKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|261867354|ref|YP_003255276.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412686|gb|ACX82057.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 874 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 386/912 (42%), Positives = 554/912 (60%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + RL++TVY+ DEEA+K+W G+ A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIVAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+F+ LI + ++TG K + RVI DH+RS ++LI DG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKD--LTNKSLRVIADHIRSCAYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A E+ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGAAEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + ++L+G+VAFKLYDT+G PLD+ D+ RG+ Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEVK-GKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + +E QR RA++ S + ++ G T+F GY Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGM------DYNNVIRVDGITRFEGYTESETL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ V+ SGQ V+ D TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFHDGKPVDTISSGQSAVVILDNTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G+G + D QK +F H + +G L S+ +D R+++S+NHSAT Sbjct: 508 IGRLEGNGFNFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDEVRRQRISLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ LRFD +PI+ A+L +E VN + N P+ Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPIK 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM E A A GA AL G KY+D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+E+++ AGIRRIEAITG+ A L Q L A LK ++ ++ + ++++K+ Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKKV 741 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+S++D+L+ ++ S +I Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + ++K ++++ VT+DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 VFASVV-DEKVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPENV 859 Query: 886 DQAIAGVASFLK 897 ++A++ + +LK Sbjct: 860 NKALSVCSDWLK 871 >gi|152977739|ref|YP_001343368.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z] gi|205829971|sp|A6VKD6|SYA_ACTSZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150839462|gb|ABR73433.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z] Length = 874 Score = 928 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 541/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT K Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKYDAINFAWEFLTSPKWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ + IIRI N DNFW+M +TGPCGP Sbjct: 121 ALPKEKLYVTVYETDDEAYDIWNKEVGVPQEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GGLP E+G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM VLQ +NY+ID+F+ LI+ ++ G GN + RVI DH+RS ++LIADG+ Sbjct: 241 ERMTAVLQHVNSNYEIDIFQTLIKKVAEIVGTTDLGNK--SLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLIEVMAEAGKQVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL+LLD L+++ + +L+G+VAFKLYDT+G PLD+ D+ R Sbjct: 359 LRLEEEQFARTLERGLILLDAELANVK-NGVLSGEVAFKLYDTYGFPLDLTADVCRERN- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F++ +E QR RA++ S + S+ G T+F GY + Sbjct: 417 IAVDENGFDKEMEAQRLRAQSASNFGM------DYTSIIRVDGETKFEGYTNVESL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ + G+ VE +GQ V+ + TPFYAE GGQ+GD Sbjct: 467 -------------------AKVTALFRDGKAVESVSAGQSAVVILENTPFYAEMGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G +G+ + D QK +F H + +G L + +D Q R+ +NHSAT Sbjct: 508 SGMLTANGLHFDVKDTQKYG-QVFGHIGELTQGTLSVGQIVNAQVDAQRRQYTKLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ GLRFD + +T ++ IE VN I N PV+ Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDVGLRFDFVQPEAVTKEQIMEIERLVNFHIRANHPVL 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T M +A + GA AL G KY + VRVV++ S LCGG HV TGEI LL I Sbjct: 627 TEEMGVAEAKSKGAIALFGEKYGETVRVVTMSP-----FSIELCGGLHVERTGEIGLLKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE ++ AGIRR+EA+TG+ A + L Q L A LK ++ ++ ++ ++ +K Sbjct: 682 ISEGAVAAGIRRVEAVTGEEAINWLFNQQTILAQSADLLKSDIPSLPEKIIQLQDKVKKT 741 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K + ++ S KI V+ ++H + D+K L+ ++D L+ ++ S +I Sbjct: 742 EKELQQLKEKAAMQAGSDLAKSAVKINGVSVVTHQLDGADAKVLRVMVDDLKNQLGSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L S K +++ VT DL + A +L + A+ + GG GGGRP MA +GG Sbjct: 802 ALGSAS-GGKVNLIAGVTADLTAKVKAGELVNVMAQQV-GGKGGGRPDMAMAGGSQPENL 859 Query: 886 DQAIAGVASFLK 897 A+ + +LK Sbjct: 860 SAALIVASDWLK 871 >gi|167582193|ref|ZP_02375067.1| alanyl-tRNA synthetase [Burkholderia thailandensis TXDOH] Length = 874 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G+L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELVQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 AALAGVKGWVEE 872 >gi|301169533|emb|CBW29134.1| alanyl-tRNA synthetase [Haemophilus influenzae 10810] Length = 874 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 387/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 TQAIKVAQDWLNK 872 >gi|295677107|ref|YP_003605631.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002] gi|295436950|gb|ADG16120.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002] Length = 874 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 376/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAADIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTEVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 KDKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LIQA+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIQAAGRETGVTDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL QA+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGDAYPELAQAEKRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEERFFETIEHGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V++ +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGASVQQVQAGQPAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANASTRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T +++ +E+ VN + N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M+ +DA+ GA AL G KY D VRV+ + S LCGGTHV+ +G+I IV Sbjct: 629 RLMSYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRSGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ + ++ + A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELEARVNAAAAVLKAQPAELTQRIGQVQDQVKALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ ++ V+ ++ + D K L+ +D L+ K++S I+ Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|307261112|ref|ZP_07542790.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869194|gb|EFN00993.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 874 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NE RGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNESRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S + ++ + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAIAGVASFLK 897 D A+ +++ Sbjct: 860 DNALKFAEEWIQ 871 >gi|145636626|ref|ZP_01792293.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH] gi|145270152|gb|EDK10088.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH] Length = 874 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 386/913 (42%), Positives = 549/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + D +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI DV+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQTGSDFVKSAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|23016227|ref|ZP_00055985.1| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 877 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 443/902 (49%), Positives = 594/902 (65%), Gaps = 36/902 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 4 MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW+L+TK+F + Sbjct: 64 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWNLITKDFGI 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY +D++A WKKI+GL +IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 124 DKNRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 183 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P ++G+R+IEIWNLVFMQFEQ +K+ R LPK SIDTGMGLER+A +LQ Sbjct: 184 DHIPGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRVPLPKPSIDTGMGLERLAALLQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD+DL + LI+AS + + +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY Sbjct: 244 KHDNYDVDLLRALIEASAESSNTDADGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 303 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G +EPL+ L+PAL +MG AYPEL++A LI ETL+ E+ RF Sbjct: 304 VLRRIMRRAMRHAHLMGCSEPLLWKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 363 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLD+GL LLD ++ +G L G+VAFKLYDT+G PLD+ QD L A+G G+D F Sbjct: 364 VTLDKGLKLLDDEITRIGSAGKLAGEVAFKLYDTYGFPLDLTQDALKAKG-IGVDTDGFA 422 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF L+EK GA++F+GYD Sbjct: 423 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GD 537 + A+V+ G++VE G V V+ +QTPFY E+GGQ+GDTG G Sbjct: 465 -----AEQAEGKIVALVENGKVVEAVHPGHSVAVIANQTPFYGESGGQMGDTGIITVAGG 519 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + +TD QKK + VH VE G + +D R +HSATHLLH L Sbjct: 520 KATITVTDTQKKLGDLVVHFGTVEGGPVAVGEDAHFAVDSSRRDATRGHHSATHLLHAVL 579 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ILG HV+Q GS + PD LRFD H+K ++ E +++E VN I N V T +M + Sbjct: 580 RGILGDHVTQKGSQVGPDRLRFDFAHTKALSPEESRAVEAEVNRRIRVNAEVATTVMTPD 639 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DAI +GA AL G KY + VRVVS+ G S+ LCGGTH TG+I IV+ES++ Sbjct: 640 DAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHARRTGDIGGFKIVAESAVA 694 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG + Q++ L A LK + ++ R+ + +E RKL+ A+ Sbjct: 695 SGVRRIEAVTGPAFLAWAQAQEDLLARAADTLKAAPTDLPARIAGLMDERRKLERELAEV 754 Query: 778 KLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + QL + + + + + +++ V K+LK + D ++K+I SG+I+LV + Sbjct: 755 RKQLATGGGQGAATKTVNGITYAGKVLNGVPPKDLKGMADEIKKQIGSGVIVLVS-DADG 813 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 KAS+++ VTEDL +++AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A A+ + Sbjct: 814 KASIVVCVTEDLTAKYSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAVDKIEQ 873 Query: 895 FL 896 L Sbjct: 874 AL 875 >gi|68249409|ref|YP_248521.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP] gi|81336165|sp|Q4QM86|SYA_HAEI8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68057608|gb|AAX87861.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP] Length = 874 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 387/913 (42%), Positives = 547/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEVGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|319775253|ref|YP_004137741.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047] gi|317449844|emb|CBY86053.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047] Length = 874 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 384/913 (42%), Positives = 545/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGNHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA++ S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDRKMEAQRTRAQSASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|329122821|ref|ZP_08251393.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116] gi|327472085|gb|EGF17523.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116] Length = 874 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 384/913 (42%), Positives = 545/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 I+ +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-INEQAFDRKMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|293390902|ref|ZP_06635236.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951436|gb|EFE01555.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 874 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 386/912 (42%), Positives = 555/912 (60%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + RL++TVY+ DEEA+K+W G++A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIAAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+F+ LI + ++TG K + RVI DH+RS ++LI DG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKD--LTNKSLRVIADHIRSCAYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG TE L+P L M A E+ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + ++L+G+VAFKLYDT+G PLD+ D+ RG+ Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEVK-GKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + +E QR RA++ S + ++ G T+F GY Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGM------DYNNVIHVDGITRFEGYTESETL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ V+ +GQ V+ D TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFHDGKPVDTISAGQSAVVILDNTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G+G + D QK +F H + +G L S+ +D R+ +S+NHSAT Sbjct: 508 IGRLEGNGFNFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDEVRRQHISLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ LRFD +PI+ A+L +E VN + N P+ Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPIK 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM E A A GA AL G KY+D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+E+++ AGIRRIEAITG+ A L Q L A LK ++ ++ + ++++K+ Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKKV 741 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+S++D+L+ ++ S +I Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + ++K ++++ VT+DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 IFASV-IDEKVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPENV 859 Query: 886 DQAIAGVASFLK 897 ++A++ + +LK Sbjct: 860 NKALSVCSDWLK 871 >gi|145634774|ref|ZP_01790482.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA] gi|145267940|gb|EDK07936.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA] Length = 874 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 388/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSGQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKHTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 DKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|186476371|ref|YP_001857841.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815] gi|205830006|sp|B2JK72|SYA_BURP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|184192830|gb|ACC70795.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815] Length = 874 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 379/911 (41%), Positives = 530/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + T + NN + +V+ DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETNIDDLSNN--SLKVVADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL A+ + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAQMGGAYPELKDAEQRVTHVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+G L+ L + L+G+VAFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEGALADLDSKGGKTLDGEVAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA + + T F GY+ + Sbjct: 419 -VDEPAFDEAMARQREQARAAGKFKMAQGLD-------YTGAKTTFHGYEEIVFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E GQ+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------ARVTALYVDGASVNEVTKGQQAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G IR + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANASIRFGVVDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS + D RFD H+ P+T +++ +E+ VN + N P + Sbjct: 569 LMHKALREVLGGHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV+ TG+I L IV Sbjct: 629 RVMAYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ + A+ LK + R+ + ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQELDARIHAAAAALKAQPSELTQRISMVQDQVKALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V ++ + D K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELASQAIDVSGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LASV-EGGKVSLIAGVTADTSKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|294012144|ref|YP_003545604.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S] gi|292675474|dbj|BAI96992.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S] Length = 884 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 436/904 (48%), Positives = 593/904 (65%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL ++IIRI T DNFW+M ++GPCGPCSEIF+D G Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ+ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D F+ LI+ S +T EG +HRVI DHLRS+SFLIADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFRALIEESGALTKTATEGEFKASHRVIADHLRSTSFLIADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+ +L +EMG AY EL++A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMHRLVGSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD L + L G+ AFKLYDT+G P D+ +D L +RGL G+D F+ Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ++ ARA G G +++IWF + EK G T+FIGY G Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGYSSTEG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V AIV+ G + A +G+ V +V +QTPFY E+GGQ+GD G Sbjct: 466 ---------EGEVVAIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516 Query: 540 RL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + D K + H A + G ++ ++ L++D R ++ NHSATHLLH AL Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSVKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + PD LRFD +H + +T ++ +IE +VN+ + N V TR+M +D Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHGQIAAIEADVNEQVRHNEAVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA AL G KY D VRV+S+ D +S LCGGTHV +TG+I + I+SES++ + Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG+ AR L ++++L+ A+ LK + V R+ + E+ RKL+ A+ K Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRKLERELAEAK 756 Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 L + KI VNF+ +I +D KEL+ ++D + + SG+ ++ + Sbjct: 757 KALALGGGGSAQAAGPEKIGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAILAVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + +A++ + VT+DL+ +AVDL R + LGG GGGGRP MAQ GGP+G+KA+ A+ V Sbjct: 816 DGRATIAVGVTDDLVGSISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKAEAALEAV 875 Query: 893 ASFL 896 + L Sbjct: 876 KAAL 879 >gi|330428621|gb|AEC19955.1| alanyl-tRNA synthetase [Pusillimonas sp. T7-7] Length = 873 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 394/911 (43%), Positives = 542/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH+++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y Sbjct: 1 MKTSEIRQKFLSFFESKGHQVVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT + L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQNAWELLTTVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++I+RI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEIGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQFE+ +LPK +DTGMGLER+ Sbjct: 181 IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPLLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P+ Sbjct: 241 AAVLQHVHSNYEIDLFQSLIKAAARETGISDLANN--SLKVIADHIRACSFLIVDGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+ L EMG AYPEL+ + IE+ L+ Sbjct: 299 NEGRGYVLRRIVRRALRHGHKLGQSGVFFHRLVKDLVAEMGQAYPELVAQQARIEQVLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +TL+ G+ +LD L+ + + +L+G F LYDT+G P+D+ DI R + Sbjct: 359 EEERFSETLENGMKILDAALAAVPEKGMLDGQTLFTLYDTYGFPVDLTADICRER-EVQV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A+ QR +ARA + L T+F GYD L+ Sbjct: 418 DMDGFEVAMNHQREQARAAGKFKAAEG-------LSYSGVETRFDGYDQLQS-------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ G VE +GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 463 ---------------QGTVTALYIDGTQVESVSAGQQAIVVLDATPFYAESGGQVGDAGI 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G R + D QK +F HH + G+L ++ +D R + NHSATHL+ Sbjct: 508 LQANGARFAVADTQKIQNSVFGHHGEMLEGVLAVGDTVDAQVDKARRARTVRNHSATHLM 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + PD RFD H P+T+ ++ +E VN + N ++ Sbjct: 568 HKALRQVLGSHVQQRGSLVDPDKTRFDFAHDAPMTADQIAQVERIVNAEVLNNHATQAQL 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ +DA+ GA AL G KY D VRV+ + S LCGGTHV+ TG+I L IVSE Sbjct: 628 MSYDDAVQGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVARTGDIGLFKIVSE 681 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RR+EAITG A + + ++ L A LK ++V RV + + + L+ Sbjct: 682 GGVAAGVRRVEAITGDNAVAWVQQINDTLVQAAGLLKTQPADLVERVALMQTQAKALERD 741 Query: 774 HAKRKLQLNVE---DLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L DL+ I D + +S VD K L+ ++D L+ K++S +++L Sbjct: 742 LDRLKSKLAASAGNDLASQAIVLRGDAKLLVASLSGVDPKALRGMIDQLKDKLKSAVVLL 801 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K S+ VT DL + A DL + A + GG GGGRP MA GG + Sbjct: 802 AAVA-DDKISLAAGVTGDLASQVKAGDLVGMVAAQV-GGKGGGRPDMAMGGGTDVGALPA 859 Query: 888 AIAGVASFLKK 898 A AGV +++++ Sbjct: 860 ATAGVEAWVRE 870 >gi|134282822|ref|ZP_01769525.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305] gi|134245908|gb|EBA45999.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305] Length = 874 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDR 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|53719621|ref|YP_108607.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|76812235|ref|YP_333216.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121601160|ref|YP_992755.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124386422|ref|YP_001026453.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10229] gi|126449388|ref|YP_001080272.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10247] gi|126451905|ref|YP_001065931.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|167001586|ref|ZP_02267381.1| alanine--tRNA ligase [Burkholderia mallei PRL-20] gi|167738941|ref|ZP_02411715.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 14] gi|167816161|ref|ZP_02447841.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 91] gi|167824533|ref|ZP_02456004.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 9] gi|167846068|ref|ZP_02471576.1| alanyl-tRNA synthetase [Burkholderia pseudomallei B7210] gi|167894639|ref|ZP_02482041.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 7894] gi|167903047|ref|ZP_02490252.1| alanyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177] gi|167911280|ref|ZP_02498371.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112] gi|167919300|ref|ZP_02506391.1| alanyl-tRNA synthetase [Burkholderia pseudomallei BCC215] gi|217423601|ref|ZP_03455102.1| alanine--tRNA ligase [Burkholderia pseudomallei 576] gi|226192959|ref|ZP_03788571.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|242315165|ref|ZP_04814181.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|254180068|ref|ZP_04886667.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|254188523|ref|ZP_04895034.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|254198350|ref|ZP_04904772.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|254261778|ref|ZP_04952832.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a] gi|254297905|ref|ZP_04965358.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|254358720|ref|ZP_04974993.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|59798504|sp|Q63TF9|SYA_BURPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123599400|sp|Q3JT87|SYA_BURP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830001|sp|A3MJ36|SYA_BURM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830002|sp|A2S3D4|SYA_BURM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830003|sp|A1V3F2|SYA_BURMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830004|sp|A3NUB0|SYA_BURP0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52210035|emb|CAH36008.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|76581688|gb|ABA51163.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121229970|gb|ABM52488.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124294442|gb|ABN03711.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10229] gi|126225547|gb|ABN89087.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|126242258|gb|ABO05351.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10247] gi|148027847|gb|EDK85868.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|157807006|gb|EDO84176.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|157936202|gb|EDO91872.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|169655091|gb|EDS87784.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|184210608|gb|EDU07651.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|217393459|gb|EEC33480.1| alanine--tRNA ligase [Burkholderia pseudomallei 576] gi|225935049|gb|EEH31024.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|242138404|gb|EES24806.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|243062691|gb|EES44877.1| alanine--tRNA ligase [Burkholderia mallei PRL-20] gi|254220467|gb|EET09851.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a] Length = 874 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|154253021|ref|YP_001413845.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] gi|154156971|gb|ABS64188.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] Length = 913 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 443/911 (48%), Positives = 604/911 (66%), Gaps = 37/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ +LEFF+ GHE++ S L+P NDPTL+FTN+GMVPFKN+FTGQE Y+ Sbjct: 22 MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K AI+ AWDL+TKE L Sbjct: 82 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 141 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +T+Y++D+EA LWKKI+GLS DKI+R+ NFW M +TGPCGP SEIF+D G Sbjct: 142 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 201 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R+IEIWNLVFMQ+EQ R LPK SIDTGMGLER+A VLQ Sbjct: 202 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 261 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI AS + + +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY Sbjct: 262 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 321 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+L+G EPLM L+PAL +MG AYPEL +A+ L+ ETLR E+ RF Sbjct: 322 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 381 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD + LG +L G+VAFKLYDT+G PLD+ QD L +RG++ +D F+ Sbjct: 382 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 440 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ +QR ARA G G TE +WF L++K GAT+F+GY+ Sbjct: 441 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 482 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A++ G+ V++ +G ++ +QTPFYAE+GGQ+GDTG Sbjct: 483 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 537 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D KK + VH + RG L+ + + +D R NHSATHLLH AL Sbjct: 538 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 597 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + P+ LRFD +H KP+T E+ +E VN +I QN V TR+M ED Sbjct: 598 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 657 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AIA+GA AL G KY + VRV+++ +D G +S LCGGTHV G+I + IVSES+ Sbjct: 658 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 717 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +GIRRIEA+TG+ AR++L+ QD K AS L++S ++ RV + EE ++L+ A Sbjct: 718 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 777 Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K QL + ++ + V ++ + V+ K+L+ ++D +K++ SG+++L Sbjct: 778 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 837 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V IS++ K ++ + VT+DL R+NAV+L + A +GG GGGGRP MAQ+GGP KAD Sbjct: 838 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 897 Query: 888 AIAGVASFLKK 898 A+ V + + + Sbjct: 898 ALDAVKAAVGE 908 >gi|205830263|sp|A7HWA5|SYA_PARL1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 443/911 (48%), Positives = 604/911 (66%), Gaps = 37/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ +LEFF+ GHE++ S L+P NDPTL+FTN+GMVPFKN+FTGQE Y+ Sbjct: 1 MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K AI+ AWDL+TKE L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +T+Y++D+EA LWKKI+GLS DKI+R+ NFW M +TGPCGP SEIF+D G Sbjct: 121 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R+IEIWNLVFMQ+EQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI AS + + +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY Sbjct: 241 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+L+G EPLM L+PAL +MG AYPEL +A+ L+ ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD + LG +L G+VAFKLYDT+G PLD+ QD L +RG++ +D F+ Sbjct: 361 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ +QR ARA G G TE +WF L++K GAT+F+GY+ Sbjct: 420 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A++ G+ V++ +G ++ +QTPFYAE+GGQ+GDTG Sbjct: 462 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D KK + VH + RG L+ + + +D R NHSATHLLH AL Sbjct: 517 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + P+ LRFD +H KP+T E+ +E VN +I QN V TR+M ED Sbjct: 577 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AIA+GA AL G KY + VRV+++ +D G +S LCGGTHV G+I + IVSES+ Sbjct: 637 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +GIRRIEA+TG+ AR++L+ QD K AS L++S ++ RV + EE ++L+ A Sbjct: 697 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 756 Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K QL + ++ + V ++ + V+ K+L+ ++D +K++ SG+++L Sbjct: 757 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V IS++ K ++ + VT+DL R+NAV+L + A +GG GGGGRP MAQ+GGP KAD Sbjct: 817 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 876 Query: 888 AIAGVASFLKK 898 A+ V + + + Sbjct: 877 ALDAVKAAVGE 887 >gi|163759600|ref|ZP_02166685.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43] gi|162283197|gb|EDQ33483.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43] Length = 884 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 477/895 (53%), Positives = 628/895 (70%), Gaps = 35/895 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KN HE++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNEIRSAFLDYFKKNEHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYTT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+LAW+LLT+EF + Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIELAWNLLTREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ RL +TVY D++AF LW+KI+G+ +IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 NKERLLVTVYHTDDDAFDLWRKIAGVPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ ER LP+ SIDTGMGLER+A +LQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQLTVDERVDLPRPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE++TG+ EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRRLIMASEELTGVSAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMYKLLPTLVAEMGRAYPELTRAEALISETLKLEETRFS 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD + LG+ + L G+ AFKLYDT+G PLD+ QD L RG +D F Sbjct: 361 KTLERGLSLLDEASADLGEGDRLGGETAFKLYDTYGFPLDLTQDALRQRG-IEVDTDGFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARAH G G TE +W+ +K++ GAT F+GYD Sbjct: 420 AAMERQKAEARAHWSGSGDKATETVWYEIKDRVGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++A+V+ G V A +G+ V+VV +QTPFY E+GGQ+GD G G+G Sbjct: 462 -----TEIAEGVIQAMVRDGAEVAAAKAGESVDVVVNQTPFYGESGGQMGDQGIISGEGY 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 RL+++D QK+ EG+FVH A+V G ++ L + + R ++ NHSATHLLH AL Sbjct: 517 RLEVSDTQKRGEGLFVHRAVVAEGEVKAGAVAQLDVAHSRRAKIRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ EL +E N+II QN PV TR+M +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELSEVETMANEIILQNSPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ GV +S LCGGTHV++TGEI L+ ++S+S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVRGVKANRPYSVELCGGTHVAATGEIGLVRVLSDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR HL QDEKL+ AS LKV G+VV R+E + +E +K++ Sbjct: 697 AVSAGVRRIEAVTGEAARQHLSEQDEKLRQAASLLKVQPGDVVSRIEALMDERKKMEREL 756 Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + I V F+ +++ V K+LK ++DA + + SG+ V Sbjct: 757 TEARKKLALGGGGAGGDESRDIGGVKFLGKVVNGVQPKDLKGLVDAAKTSLGSGVAAFVA 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 IS++ KASV++ VTEDL + +AVDL R++++ +GG GGGGRP MAQ+GGP+G K Sbjct: 817 ISEDGKASVVVGVTEDLTSKLSAVDLVRVASQAIGGKGGGGRPDMAQAGGPDGAK 871 >gi|260579906|ref|ZP_05847736.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW] gi|260093190|gb|EEW77123.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW] Length = 874 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 385/913 (42%), Positives = 546/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 TQAIKVAQDWLNK 872 >gi|90412109|ref|ZP_01220116.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK] gi|90327087|gb|EAS43466.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK] Length = 873 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 380/910 (41%), Positives = 531/910 (58%), Gaps = 54/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 Q RL +T+Y+ D+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+ S +V G YE + + RV+ DH+RS +FLI DG++P+ Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T L L MG+A EL + + L+E+ L+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLAGPLAEIMGTAGEELKKQQALVEKVLKI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++ FG+TLDRGL +L+ L +L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 361 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN A+E QR RAR G + + T+F GY Sbjct: 419 DEEGFNNAMEAQRQRAREA------GKFGVDYNESIKVDVNTEFCGYT------------ 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + A+ + GE V+ ++G+ ++ D TPFYAE+GGQ GD G Sbjct: 461 -----------GTAAQSRIIALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +TD QK H + +G L L +D R +++NHSATHLL Sbjct: 510 LTAESTMFNVTDTQKFGA-AIGHQGSLVQGALNIGDKLEAQVDVARRAAITLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD ++ + + +L+ IE VN+ I N + T I Sbjct: 569 HSALRNLLGEHVAQKGSLVKADALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H +TG+I L I SE Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG A L Q+ L AS +K +V +V + ++L+ Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +L ++ + +I V + + D+K L+ ++D ++ K+ SGI++L Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S + K +++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861 Query: 889 IAGVASFLKK 898 + V +L + Sbjct: 862 LESVTPWLTE 871 >gi|237811944|ref|YP_002896395.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346] gi|237502943|gb|ACQ95261.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346] Length = 874 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDR 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|126441822|ref|YP_001058678.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 668] gi|205830005|sp|A3N8K7|SYA_BURP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126221315|gb|ABN84821.1| alanine--tRNA ligase [Burkholderia pseudomallei 668] Length = 874 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|167719939|ref|ZP_02403175.1| alanyl-tRNA synthetase [Burkholderia pseudomallei DM98] Length = 874 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYGIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|294634755|ref|ZP_06713284.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685] gi|291091814|gb|EFE24375.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685] Length = 875 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 384/910 (42%), Positives = 562/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTGAQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L Q +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPQEKLWVTVYESDDEAYNIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG P E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +V G+ + + RVI DH+RS +FL++DG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVDD--LSSKSLRVIADHIRSCAFLVSDGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKESFFYKLVAPLIQVMGSAADELARQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G PLD+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDDELAQLD-GDTLDGETAFRLYDTYGFPLDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + F +A+E QR RAR S + SL G+T F GY + Sbjct: 420 -VDEVGFEKAMEAQRRRARE------SSGFGADYNSLIRVEGSTDFTGYQRQQQM----- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + G+ V+ +G++ VV DQTPFYAE+GGQ+GD Sbjct: 468 ------------------ATITALFRNGQAVDALQAGEEGVVVLDQTPFYAESGGQVGDR 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H V +G L+ SL +ID R ++ ++HSATH Sbjct: 510 GELSASGVSFVVDDTQKYGQ-AIGHLGKVVQGHLQVGASLQASIDVARRDRIRLSHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL ++LG+HV+Q GS + LRFD +H + + +++ +E+ VN I +NLP+ T Sbjct: 569 LMHAALRSVLGTHVAQKGSLVNDGYLRFDFSHPEAMKPQQIRQVEEIVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M E+A A GA AL G KY+ +VRV+S+ G S+ LCGGTH TG+I L IV Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GEFSTELCGGTHAERTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG++A + + + L+ AS +K +V ++ + E+ R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEQALQAMHQESDMLREAASLVKGDTQSVAEKIRGLMEKSRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ ++ V + + V+ K L++++D L+ ++ S I++ Sbjct: 744 KALQQLKDQQAAQESASLSAQAVEVNGVKLLVSQLHGVEPKMLRTMVDDLKNQMGSCIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++E K S++ V++DL + A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LA-TAEEGKVSLIAGVSKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGSDVAALP 861 Query: 887 QAIAGVASFL 896 QA+A V+ ++ Sbjct: 862 QALASVSDWV 871 >gi|290476264|ref|YP_003469168.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004] gi|289175601|emb|CBJ82404.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004] Length = 887 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 384/910 (42%), Positives = 552/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 15 KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRPYSRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT + F+ Sbjct: 75 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGKEWFN 134 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 135 LPKEKLWVTVYETDDEAYDIWHKEVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 194 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGLE Sbjct: 195 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLE 254 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NYDIDLF LI + +VTG + RVI DH+RS +FL+ DG++ Sbjct: 255 RLTAVLQHVNSNYDIDLFCDLIASVAEVTGATD--LTNKSLRVIADHIRSCAFLVCDGVV 312 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + L+E+ L Sbjct: 313 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVAPLIKIMGSAGDELKRQQSLVEQVL 372 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 373 KTEEEQFARTLERGLQLLDEELEKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 431 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + F+ A+E QR RAR S + + G + F GY+ Sbjct: 432 -VDEVGFDVAMENQRRRARE------SSGFGTDYNEQIKVDGRSDFSGYEH--------- 475 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N + V AI + GE +++ +G++ V+ D+T FYAE+GGQ+GDT Sbjct: 476 --------------NSQQATVMAIFRHGEAIDQIHAGEEAIVILDKTAFYAESGGQVGDT 521 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++TD QK H + G L ++ I+ R + +NHSATH Sbjct: 522 GNLSNGNGIFEVTDTQKYG-QAIGHIGKLINGTLNVNNTINAEINRVRRDSIRLNHSATH 580 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + + +++ +E+ VN+ I +NL +VT Sbjct: 581 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKLEQIRQVENLVNEEIRKNLSIVT 640 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M E+A GA AL G KY+++VRV+S+ G S+ LCGGTH S TG+I L I Sbjct: 641 ELMELEEAKTKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIS 695 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEAITGQ A + + Q + L+ +A +K ++ +V+ + ++L+ Sbjct: 696 SESGTAAGIRRIEAITGQTALNSVYQQTDLLQDIAHLVKSDISSLNEKVKTTLDRTKQLE 755 Query: 772 LIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K Q ++ S +I V + + + + K L++++D L+ ++ S II+ Sbjct: 756 KELQHLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDTEPKMLRTMVDELKNQLGSAIIV 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K ++++ +T+DL R A DL A+ + GG GGGRP +AQ+GG + Sbjct: 816 LSTVTGD-KVTLIVGITKDLTARIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVAALP 873 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 874 SALASVEEWV 883 >gi|254489976|ref|ZP_05103171.1| alanyl-tRNA synthetase [Methylophaga thiooxidans DMS010] gi|224465061|gb|EEF81315.1| alanyl-tRNA synthetase [Methylophaga thiooxydans DMS010] Length = 858 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 400/893 (44%), Positives = 535/893 (59%), Gaps = 47/893 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 FL+FF GHE++ SS L+P NDPTL+FTN+GMV FK F GQE Y T Q+CVR Sbjct: 1 MFLDFFASKGHEVVASSPLVPANDPTLLFTNAGMVQFKETFLGQETRKYTRAVTTQRCVR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 AGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ L +L+ITV Sbjct: 61 AGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTETLALPPEKLWITV 120 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP- 188 ++ED+EA +W K G+SAD+ RI DNFWSM +TGPCGPCSEIF+D GE I GG P Sbjct: 121 FEEDDEAADIWLKEIGVSADRFSRIGAKDNFWSMGDTGPCGPCSEIFYDHGEDIAGGPPG 180 Query: 189 GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 E+G+RYIEIWNLVFMQF++ LPK S+DTGMGLER+A VLQ NNY+IDL Sbjct: 181 TPEEDGDRYIEIWNLVFMQFDRSADGTLTPLPKPSVDTGMGLERLAAVLQHVHNNYEIDL 240 Query: 249 FKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308 F+HLI+A + ++G + ++ + RVI DH+RS SF+IADG+ P+NEGRGYVLRRI+RRA Sbjct: 241 FQHLIEAIQALSGTED--SSNFSLRVIADHIRSCSFMIADGVHPSNEGRGYVLRRIIRRA 298 Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368 + + LG E L+ L EMG A+PEL QA+ L+E+ L E+ RF TLD GL + Sbjct: 299 IRHGHKLGLKEAFFHKLVQPLVNEMGDAFPELKQAQALVEKALLQEENRFADTLDNGLRI 358 Query: 369 LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428 LD + +G EI G+ F LYDT+G P+D+ DI RGL IDI F +A+E QR+R Sbjct: 359 LDQAIEDMGDKEI-PGETVFLLYDTYGFPIDLTADIARERGLT-IDIAGFERAMEAQRTR 416 Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488 AR+ S G + + G T F GY + Sbjct: 417 ARSASQFAGGLSEQ------IAIDGETAFCGYSQTQ-----------------------E 447 Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548 + + AI+ GE V++ +GQ+ +V D TPFYAE+GGQ+GD G D ++D +K Sbjct: 448 TGTITAIIADGEHVDQLEAGQEGVLVLDHTPFYAESGGQVGDHGEITSDNASFTVSDTRK 507 Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608 + + F H E G S+ ID NR+ ++NHSATHLLH AL +LG HV Q Sbjct: 508 QGK-AFTHIGRCEHGQFHVGQSVTAQIDESNRQATALNHSATHLLHAALRNVLGDHVMQK 566 Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668 GS + P LRFD +H +P+T +L IE VN I N PV T++M E+A SGA AL Sbjct: 567 GSLVDPQRLRFDFSHFEPVTPDQLHDIERMVNQQIRLNHPVDTKLMAIEEAKKSGAMALF 626 Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 G KY+D VRV+S+ G S LCGGTHV TG+I LL I +E+ I +G+RRIEA+TG Sbjct: 627 GEKYDDEVRVLSM-----GDFSIELCGGTHVQHTGDIGLLKITAEAGIASGVRRIEAVTG 681 Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-- 786 +A ++ L ++ LK NV + + + R+L+ K +L Sbjct: 682 DKALDYIDTTQSTLNQVSDLLKAKPDNVQDKAALLVQRSRELEKELESLKAKLASSAGDD 741 Query: 787 ---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 S +I + ++ + D K L+ +D L+ K+ + I+L + K++K +++ VT Sbjct: 742 LANSVQEINGIKVLASSLEGADGKALREAVDQLKNKLGTAAIVLTAV-KDEKITIIAGVT 800 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +D+ D+ A DL A + GG GGGRP MAQ GG A+A V ++ Sbjct: 801 KDITDKIRAGDLVGHVASQV-GGKGGGRPDMAQGGGNEPQNLAAALASVTDWV 852 >gi|77359489|ref|YP_339064.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] gi|123589570|sp|Q3ILF3|SYA_PSEHT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|76874400|emb|CAI85621.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] Length = 868 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 391/900 (43%), Positives = 537/900 (59%), Gaps = 48/900 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y Sbjct: 4 MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+E L Sbjct: 64 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWQFLTEEVKLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L +T+Y +DEEAF W GL AD+IIRI T DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 KEKLLVTIYHDDEEAFNYWSNDIGLPADRIIRIATADNFWSMGDTGPCGPCSEIFYDHGE 183 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS E+G+R+IEIWNLVFMQ+ +QN LPK S+DTGMGLER+A +LQ Sbjct: 184 HIWGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERIAAILQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLFK LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYV Sbjct: 244 HSNYEIDLFKGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGK Sbjct: 302 LRRIIRRAVRHGNKLGAQGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL +L+ LS L +++ GD+ FKLYDT+G P D+ D+ R + ID F + Sbjct: 362 TLERGLAILEESLSDLK-GDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDNKGFEE 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + QR A+ G + + T + GY Sbjct: 420 CMAVQRKTAQQA------GKFGADYNDQLKSDKQTTYKGYTTTSH--------------- 458 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S+ V + E V GQK V+ D+TPFYAE+GGQ+GDTG G Sbjct: 459 --------SATVVEVFAGSESVSLLEDGQKGIVILDRTPFYAESGGQVGDTGVISVAGGE 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +T+ K H + +G + + TID R ++ NH+ATH+LH L + Sbjct: 511 FTVTNTTKLGNAF--AHHGIVQGRIGLNDKVEATIDDARRERIKKNHTATHILHETLRQL 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + + LRFD +H + +T EL+ IE VND I N + T +M +DA Sbjct: 569 LGEHVGQKGSLVQAERLRFDFSHFEAVTKEELREIERVVNDEIRCNFALSTELMAIDDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+ Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A +++ Q++KL +A+ +K +V+ +V + ++ ++L+ A+ + Sbjct: 684 RRIEAVTGADAIAYVSEQEQKLNDVAAVVKADSASVLEKVTALLDKSKQLEKQIAQLNDK 743 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S +I + + + +SK L+ ++D L+ KI SG+I L G++ + K Sbjct: 744 LASAAGASLLDSVVEINGIKLLIANVKGTESKALRGMVDDLKNKIGSGVIAL-GVASDDK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+DL R A +L A + GG GGGRP MAQ+GG A+ V ++ Sbjct: 803 VSLIAGVTKDLTGRVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPENLTAALDSVTAW 861 >gi|212709394|ref|ZP_03317522.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM 30120] gi|212688306|gb|EEB47834.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM 30120] Length = 875 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 549/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY D+EAF +W K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYATDDEAFDIWNKEIGVPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+ID+F+ LI A+ + TG + + RVI DH+RS +FL++DG++ Sbjct: 243 RISAVLQHVNSNYEIDIFRELIAAAAEATGATD--LSNKSLRVIADHIRSCAFLVSDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG E L+ L MG A EL + + L+E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVSTLIKVMGPAAEELQRQQALVEKVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L G+ AF+LYDT+G PLD+ D+ R + Sbjct: 361 KTEEEQFARTLERGLQLLDEELASLK-GDTLEGETAFRLYDTYGFPLDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E+QR RAR S + +L + ++F GY Sbjct: 420 -VDEAGFERAMEDQRRRARE------SSGFGADYNALIKVDKRSEFSGYQHDEQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + G+ V+ +G + V+ D+T FYAE+GGQ+GDT Sbjct: 467 -----------------QATIIALYKDGQPVDSLHTGDEGLVILDKTAFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D + +TD QK H VE G L + ++ + R + +NHSATH Sbjct: 510 GVLTNDSAQFTVTDTQKYG-QAIGHVGKVESGSLVVNHRIAAIVNSERRNAIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + LRFD +H + +T +L+ +ED VN I QN + T Sbjct: 569 LLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTQQQLRQVEDIVNAQIRQNSEIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY +RVRV+S+ G S LCGGTH S TG+I L I+ Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG A HL Q E+L ++A LK ++V +V+ ++ R L+ Sbjct: 684 SESGTAAGVRRIEATTGAAAMEHLHAQSEQLSAIAHLLKGDVNSLVEKVKAALDKSRNLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + + +S+ D K L++++D L+ +++S II+ Sbjct: 744 KEILQLKDQQASQESASLSSKAKDVKGIKLLVSQLSDTDPKLLRTMVDDLKNQLKSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+++ VT DL + A DL A+ + GG GGGRP MA +GG + + Sbjct: 804 L-STTSGDKVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGTDVSALP 861 Query: 887 QAIAGVASFL 896 A+ V ++ Sbjct: 862 TAMESVEQWV 871 >gi|187924800|ref|YP_001896442.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN] gi|205830007|sp|B2SZN0|SYA_BURPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187715994|gb|ACD17218.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN] Length = 874 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 374/911 (41%), Positives = 534/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+ GPCGPCSE Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADVGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFSRDAQGNMTPLPKQCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAGRETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++ L +MG AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGDAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEAAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V+E G++ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVIALYVDGASVKEVRDGRQAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T +++ +E+ VN + N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ ++ V+ ++ + D K L+ +D L+ K++S I+ Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|329296669|ref|ZP_08254005.1| alanyl-tRNA synthetase [Plautia stali symbiont] Length = 875 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 546/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GMV FK++F GQ+K Y Sbjct: 3 KSNAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMVQFKDVFLGQDKRDYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYAWELLTGEQWFK 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EAF++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAFEIWANDIGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY IDLF LI A QVTG N + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVYSNYKIDLFAKLINAVAQVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG+A +L + + +E L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEDLKRQQKHVENAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL+RGL LLD L+ L + L+G+ F+LYDT G P D+ D+ R L Sbjct: 361 KNEEEQFAKTLERGLALLDDELAKLK-GDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F A+E+QR RAR + ++ TQF GYD L Sbjct: 420 -IDEAGFEAAMEQQRQRAREA------SGFGTDYNTVIRFDTPTQFKGYDHL-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + V+A+ G+ VE+ +GQ V+ DQTPFY E+GGQ+GDT Sbjct: 465 ---------------SLEATVQALFVDGQQVEQVAAGQDAVVILDQTPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK + F H + +G LR L +D R ++ +NHSATH Sbjct: 510 GVLTGQNAEFSVQDTQKYGK-AFGHIGKLRQGQLRVGDRLQAQVDEVRRSRIILNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS LRFD +H + + +++++ED VN I +NLP+ T Sbjct: 569 LMHEALRKVLGDHVGQKGSLNNDKYLRFDFSHGEAMKPQQIRAVEDIVNAQIRRNLPITT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E+A A GA AL G KY+ RVRVVS+ G +S LCGGTH + TG+I L I Sbjct: 629 NVMDLEEAKALGATALFGEKYDQRVRVVSM-----GEYSIELCGGTHAARTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E+ AGIRRIEA+TG+ A + L Q ++L +A +K + + +V + E R L+ Sbjct: 684 GEAGTAAGIRRIEAVTGEAAIAQLHAQSDQLTDIAQVVKANHSYLNEKVRGLVENVRALE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + Q ++ ++ + +S V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLRDQQAAQESASLSSKAVEVKGAKLLVSELSNVEPKMLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ VT+DL DR A +L A + GG GGGRP +AQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELIGELAAQV-GGKGGGRPDLAQAGGTDAQALS 861 Query: 887 QAIAGVASFL 896 A+ V ++ Sbjct: 862 GALVSVPEWV 871 >gi|261346225|ref|ZP_05973869.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541] gi|282565533|gb|EFB71068.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541] Length = 875 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 386/910 (42%), Positives = 549/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGVPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG P E+G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGTPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDID+F+ LI A+ + TG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RISAVLQHVNSNYDIDIFRELIAAAAEATGATD--LSNKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG + L+P L MG+A EL + + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVPTLIKVMGTAADELQRQQAMVEKVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L G+ AF+LYDT+G PLD+ D+ R + Sbjct: 361 KTEEEQFARTLERGLQLLDDELASLK-GDTLEGETAFRLYDTYGFPLDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E+QR RAR S + +L + ++F GY Sbjct: 420 -VDEEGFERAMEDQRRRARE------SSGFGADYNALIKVDKRSEFSGYQHDEQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + G+ V+ +G++ V+ D+T FYAE+GGQ+GDT Sbjct: 467 -----------------QATITALYKDGQPVDALNAGEEGLVILDKTAFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + + D QK H VE G L + ++ + R + +NHSATH Sbjct: 510 GVLTNESGNFVVLDTQKYG-QAIGHVGKVESGSLVVNHRISARVNSERRNAIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + +T +L+ +ED VN I QN + T Sbjct: 569 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEALTQQQLRQVEDIVNAQIRQNSEIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY +RVRV+S+ G S LCGGTH S TG+I L I+ Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG A HL Q E+L ++A LK ++V +V+ ++ R L+ Sbjct: 684 SESGTAAGVRRIEATTGATAIEHLHAQSEQLSAIAHLLKGDANSLVEKVKAALDKSRNLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + + +++ D K L++++D L+ +++S II+ Sbjct: 744 KEILQLKDQQASQESASLGSKAKDVKGIKLLVSQLNDTDPKLLRTMVDDLKNQLKSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+++ VT DL + A DL A+ + GG GGGRP MA +GG + Sbjct: 804 L-STTSGDKVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGSDVKALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 TAMASVEQWV 871 >gi|260581631|ref|ZP_05849428.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127] gi|260095224|gb|EEW79115.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127] Length = 874 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 383/913 (41%), Positives = 549/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P + M A ++ ++ +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTIIDVMAEAGKDVKAKQVNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + D++L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLNLLDEALAQVK-DDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+T Q A L Q L A LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTAQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|268593120|ref|ZP_06127341.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131] gi|291311391|gb|EFE51844.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131] Length = 875 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 550/911 (60%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEEWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY D+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGIPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+ID+F+ LI A+ + TG + RVI DH+RS +FL++DG++ Sbjct: 243 RISAVLQHVNSNYEIDIFRDLIAAAAKATGATD--LENKSLRVIADHIRSCAFLVSDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG + L+ L MG A EL + + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIKVMGPAADELARQQAMVEKVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLQLLDEELASLK-GDTLDGEAAFRLYDTYGFPIDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E+QR RAR S + SL + ++F GY Sbjct: 420 -VDEEGFERAMEDQRRRARE------SSGFGADYNSLIKVDKRSEFSGYQYDEQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + G+ V+ +G++ V+ D+T FYAE+GGQ+GDT Sbjct: 467 -----------------QATITALYKDGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D ++TD QK H VE G L + +D R + +NHSATH Sbjct: 510 GYLNNDNASFKVTDTQKYG-QAIGHIGKVEAGSLVVNHRITAVVDSARRDAIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + LRFD +H + +T +L+ +ED VN I +N + T Sbjct: 569 LLHAALRQVLGDHVSQKGSLVNDKYLRFDFSHFEAMTQEQLRQVEDIVNAQIRKNSEIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY +RVRV+S+ G S LCGGTH TG+I L I+ Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG A + Q E+L ++A +K ++V +V+ ++ R+L+ Sbjct: 684 SESGTAAGVRRIEATTGSMAIESIHNQSEQLSAIAHLVKGDINSLVEKVKAALDKSRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + + +++ D K L++++D L+ +++S II+ Sbjct: 744 KEIVQLKDQQASQESASLSSKAKDVKGIKLLVTQLADTDPKLLRTMVDDLKNQLKSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+++ VT DL + A DL A + GG GGGRP MAQ+GG + + Sbjct: 804 L-STTSGDKVSMIVGVTNDLTAKVKAGDLISYIASQV-GGKGGGRPDMAQAGGTDVSALP 861 Query: 887 QAIAGVASFLK 897 A+A V +++ Sbjct: 862 AAMASVEEWVE 872 >gi|309973694|gb|ADO96895.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2846] Length = 874 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 383/913 (41%), Positives = 547/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSLEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + +V G K + + VI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEVVGTKD--LSNKSLHVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKDVKAKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + + +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALTQVK-NSVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKVLRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AG+RRIEA+TG+ A L Q L A LK + +++++ E+ +K+ Sbjct: 682 ITENAVAAGVRRIEAVTGENAIEWLHNQQRILTQSADLLKSDVNTLAEKIQQLQEKAKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDSIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I +KK ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QA+ +L K Sbjct: 860 AQAVKVAQDWLNK 872 >gi|16272755|ref|NP_438974.1| alanyl-tRNA synthetase [Haemophilus influenzae Rd KW20] gi|1174496|sp|P43815|SYA_HAEIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1573826|gb|AAC22473.1| alanyl-tRNA synthetase (alaS) [Haemophilus influenzae Rd KW20] Length = 874 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 384/913 (42%), Positives = 545/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVR GGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA+A S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H + +G L+ S+ +D + R S+NHSAT Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 TQAIKVAQDWLNK 872 >gi|15603152|ref|NP_246224.1| alanyl-tRNA synthetase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431888|sp|P57933|SYA_PASMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|12721647|gb|AAK03371.1| AlaS [Pasteurella multocida subsp. multocida str. Pm70] Length = 874 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 390/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SS+L+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHTKGHQIVASSALVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPAEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI ++TG K + + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKD--LSNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A + + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIDVMAEAGIGVKEKQATVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+++ K E L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLALLDEALANVKKGE-LSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID + F++ +E QR RA++ S + ++ G T F GY Sbjct: 418 T-IDEVGFDREMEAQRLRAQSASQFGM------DYNNVIRVEGCTTFEGYTASESL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFADGKPVERIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G G ++ D QK +F H + G L S+ +D + R S+NHSAT Sbjct: 508 SGYLNGQGFSFEVKDTQKYG-QVFGHIGELVSGSLTVGKSVNAVVDVKRRHNTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV Q GS ++ LRFD H + IT A+L IE VN I N + Sbjct: 567 HLLHAALRQVLGEHVVQKGSLVSDVALRFDFAHHEAITKAQLVEIECLVNQQIRANHLIQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M E A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TELMELEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +E++I AGIRRIEAITG+ A S L Q L A LK ++V +++++ ++ +K Sbjct: 682 TTETAIAAGIRRIEAITGENAMSWLHQQQALLAQSADLLKSDVNSIVEKIQQLQDKAKKA 741 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI DV+ + + VD+K L+ V+D L+ ++ S +I Sbjct: 742 EKELQVLKEKSAMQAGSDLARSAVKINDVSVIVQKLDGVDTKSLRVVVDDLKNQLSSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + +E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 VFASVVEE-KVNLIVGVTSDLTSKVKAGELVNLLAQQV-GGKGGGRPDMAMAGGTQIENV 859 Query: 886 DQAIAGVASFLKK 898 D A++ ++LK+ Sbjct: 860 DHALSFATTWLKE 872 >gi|254360816|ref|ZP_04976963.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213] gi|261495705|ref|ZP_05992149.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092290|gb|EDN73359.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213] gi|261308617|gb|EEY09876.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 875 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 374/911 (41%), Positives = 545/911 (59%), Gaps = 55/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FLEFFQ GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ ++ IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + +K + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + +LG E L+P L T MG A L Q + I++T Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID FN + QR RA+A S + + ++ + T F GY + Sbjct: 418 K-IDEDGFNAEMTAQRERAKA------SSSFGTDYNNVIKVDSKTCFSGYTETSLND--- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V + G+ VE SG+ V+ D+TPFYAE GGQ+GD Sbjct: 468 -------------------ATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + ++ D QK +F H + G L + +D + R +++NHSAT Sbjct: 509 SGQISAEICNFEVVDTQKYG-QVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD++ + IT ++L+ +E VN + +N+ V+ Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A A GA AL G KY + VRVV + S LCGGTHV TG+I L I Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRVVEM-----SDFSIELCGGTHVKQTGDIGLFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE ++ AG+RRIEA+TG+ A + L + ++ A LK + V ++ ++ E+ ++ Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +I VN + + V+ K L++++D L+ ++ S ++ Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + E K ++++ VT+DL D+ NA L A+ + GG GGGRP MA +GG Sbjct: 803 V-FATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860 Query: 886 DQAIAGVASFL 896 QA++ ++ Sbjct: 861 LQALSLAQEWI 871 >gi|238756253|ref|ZP_04617569.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] gi|238705508|gb|EEP97909.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] Length = 874 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 390/909 (42%), Positives = 558/909 (61%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT K F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173 L + +L++TVY+ D+EA+ +W G+ ++IIRI DNFW M +TGPCGPCS Sbjct: 123 LPKEKLWVTVYETDDEAYDIWANDVGVPRERIIRIGDKGAAFASDNFWQMGDTGPCGPCS 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 183 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++P Sbjct: 243 IAAVLQHVNTNYEIDLFRDLITAVADVTGASD--LSSKSLRVIADHIRSCAFLISDGVIP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG E L+ L T MG A EL Q + ++E+ L+ Sbjct: 301 SNEGRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLITVMGPAADELKQQQAMVEQVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 TEEEQFARTLERGLALLDEELSQLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S + SL A++F+GYD + Sbjct: 419 VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDTASEFLGYDHIEQ------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E +G+ VV +QTPFY E+GGQ+GD G Sbjct: 466 ----------------QATVIALFRNGEAVDEVHTGEDAVVVLNQTPFYGESGGQVGDEG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++D QK + H + RGILR S+ +D R ++ +NHSATHL Sbjct: 510 VLKSAMADFIVSDTQKYGQ-AIGHLGQLSRGILRVNDSVDAVVDSMRRNRIRLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN I +NLP+ T Sbjct: 569 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAQIRRNLPIQTE 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A GA AL G KY+D+VRV+++ G S+ LCGG H + TG+I L I++ Sbjct: 629 LMELDEAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRILT 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + L Q + L+++A +K N+ ++ + + + L+ Sbjct: 684 ESGTAAGIRRIEAVTGEGAMALLHQQSDLLQNIAHLVKGDSNNLTDKIRTVLDRSKALER 743 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S ++ V + + V++K L++++D L+ ++ S II+L Sbjct: 744 ELQQLKDQQAAQESASLSASAKQVNGVKLLVSRLDNVEAKMLRTMVDDLKNQLGSAIIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S+++ VT+DL +R A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 ATTA-DDKVSLIVGVTKDLTNRVKAGELIADIAQKV-GGKGGGRPDMAQAGGTDVQALPS 861 Query: 888 AIAGVASFL 896 A+A V +++ Sbjct: 862 ALASVEAWV 870 >gi|292487293|ref|YP_003530165.1| alanyl-tRNA synthetase [Erwinia amylovora CFBP1430] gi|292900336|ref|YP_003539705.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946] gi|291200184|emb|CBJ47312.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946] gi|291552712|emb|CBA19757.1| Alanyl-tRNA synthetase [Erwinia amylovora CFBP1430] Length = 876 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 ASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAIAFAWELLTSSQWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF LIQ+ QVTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIQSVAQVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQSQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R+E+E+F KTL+RGL LLD L +L ++L+G+ F+LYDT G P+D+ D+ R L Sbjct: 361 RTEEEQFAKTLERGLALLDEELENLQ-GDMLDGETVFRLYDTFGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F +A+E+QR RAR + + ++ A++F GY L+ Sbjct: 420 -IDEAGFERAMEQQRQRAR------DASGFGSDYNNVIRIDQASEFKGYQQLQ------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ + AI G+ +GQ+ +V D TPFYAE+GGQ+GDT Sbjct: 466 ----------------LNAAISAIFVDGQAANTISAGQEGVIVLDATPFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ +++ QK A+ H + G LR + +D R ++ +NHSATH Sbjct: 510 GKLQGNSASFIVSNTQKYAQ-AIGHSGKLAIGELRVGDCVAAQVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + LRFD + + +T E++ +E+ VN I +NLP+ T Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDTYLRFDFSQFEAMTPQEMRQVEEIVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L I Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q+E+L +A +K + N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKANHSNLNEKVRALIDHARALE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + +S+V+ K L++++D L+ ++ S II+ Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861 Query: 887 QAIAGVASFL 896 A+AGV S++ Sbjct: 862 AALAGVESWV 871 >gi|315499502|ref|YP_004088305.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48] gi|315417514|gb|ADU14154.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48] Length = 880 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 446/904 (49%), Positives = 594/904 (65%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR TFL++F KN HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MPSLNQIRQTFLDYFAKNDHEIVSSSSLVPHNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+L+TKE+ L Sbjct: 61 ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAISHAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+EAF LWKKI+G S D+IIRI +DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PKDRLLATVYIDDDEAFNLWKKIAGFSDDRIIRIAGSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++EIWNLVFMQF+QQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQFDQQTDGTRLNLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD+DLFK LI+AS + TG+K EG + +HRVI DHLRS+SFLIADG+ P+NEGRGY Sbjct: 241 VHNNYDVDLFKALIRASVEETGVKAEGEALPSHRVIADHLRSTSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L P L EMG Y EL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMPRLAPVLVREMGDHYGELKRAEATIIETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RG+ LLD ++L ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++ F Sbjct: 361 RTLGRGMTLLDEATANLKDGDMLEGEVAFKLYDTYGFPLDLTQDAIRAKGLS-VNVAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ R RA+ G G + + WFS++++ GA++F+GY+ L Sbjct: 420 AAMGEQKQRGRANWKGSGETSVQAEWFSIRDQAGASEFVGYEHL---------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + IV+ GE V E + G++++VVFD+T FY E GGQ GDTG G Sbjct: 464 -------STQSHARVIVRDGESVSEGLVGERLQVVFDRTVFYPEGGGQAGDTGTLHWAGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK+A + VH + G+L + L +D R+ NHSA HLLH AL Sbjct: 517 EGRVLDTQKQAGDLIVHDVEITEGVLAVGDMVHLHVDGAKRQTTKSNHSAAHLLHAALKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P++ E++ IE VN +I QN T++M +A Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGAPVSPEEIERIEAEVNAVILQNEAATTKMMAPAEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+S+ + G +S LCGGTHVS TG+I L I+SES I Sbjct: 637 IEAGAVALFGEKYGDEVRVLSLGHALDGADKGYSVELCGGTHVSRTGDIALFKIISESGI 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA TG+ AR +L+ Q +SLA KV V RVE + + ++L+ A Sbjct: 697 AAGVRRIEAFTGEAARQYLLEQAGVARSLADQFKVPVAQVSARVEALVNDRKRLEKELAD 756 Query: 777 RKLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K L V + I V ++ ++ V K+L+ + + +K++ SG++ LVG+ Sbjct: 757 AKRALAVGGGGKASGPEDINGVKVIARVLDGVGGKDLRPLAEDFKKQVGSGVVALVGVL- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA+V + VT DL RFNA +LA+ + +GG G GG+P AQ G P+ KA+ + + Sbjct: 816 DGKAAVTVAVTPDLTGRFNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDATKAEGGLDAI 875 Query: 893 ASFL 896 + + Sbjct: 876 KAAI 879 >gi|284007755|emb|CBA73582.1| alanyl-tRNA synthetase [Arsenophonus nasoniae] Length = 899 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 390/911 (42%), Positives = 544/911 (59%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GHE++PSSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 26 KSTAEIRQAFLDFFHTKGHEIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 85 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT + F+ Sbjct: 86 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEQWFN 145 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY DE A+K+W++ G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 146 LPKERLWVTVYHTDEAAYKIWQQEIGIPIERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 205 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF +Q+ LP S+DTGMGLE Sbjct: 206 TEIFYDHGEHILGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGSLKALPTPSVDTGMGLE 265 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI + + + N + RVI DH+RSS+FLI DG+ Sbjct: 266 RIAAVLQHVNSNYEIDLFRQLIASIAKAVALSD--LNNKSLRVIADHIRSSAFLIGDGVF 323 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 PANEGRGYVLRRI+RRA+ + +LG E L+ L MG EL + IE+TL Sbjct: 324 PANEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVAPLIQVMGDTADELKSHQATIEKTL 383 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL RGL LLD L+ L + L G++AF+LYDT+G P D+ D+ R + Sbjct: 384 KNEEEQFARTLARGLQLLDDELAQLQ-GDTLAGEIAFRLYDTYGFPFDLTADVCRERNIK 442 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D FN A+E+QR RAR S + + + + F GY+ Sbjct: 443 -VDEAGFNAAMEQQRYRARE------SSGFATDYNDVIKVDSHSDFSGYEN--------- 486 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N + V AI G+ V G++ ++ D+T FYAE+GGQ+GD+ Sbjct: 487 --------------NNQQATVIAIFHHGKSVNVLNQGEEGIIILDKTSFYAESGGQVGDS 532 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++D QK A H V G + S+ ID + R + +NHSATH Sbjct: 533 GILSNSHGQFAVSDTQKYA-QAIGHLGKVITGSITVNNSVEAKIDIERRNAIRLNHSATH 591 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + LRFD +H +T +++ IED VN I +N P++T Sbjct: 592 LLHAALRDVLGEHVSQKGSLVNEKYLRFDFSHFAAMTPKQIRQIEDIVNCQIRKNDPIIT 651 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ + A GA AL G KY+ +VRV+S+ G S LCGGTH + TG+I L I Sbjct: 652 TLMDLDAAKEKGAMALFGEKYDAKVRVLSI-----GDFSIELCGGTHANRTGDIGLFRIK 706 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEAITGQ A L Q + L + +K +++ +++ ++ + L+ Sbjct: 707 SESGTAAGIRRIEAITGQAAIDDLHLQSQLLAEIGQLMKGDADSLMEKIKATLDKVKLLE 766 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ KI VN + ++ + K+L+ ++D L+ +++S II+ Sbjct: 767 RSLNQLKGQQAAQESVSLSQKVKKINGVNLLVTQLNNTEPKQLRIIVDDLKNQLKSAIIV 826 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L IS + K S+++ VT DL + A DL A+ + GG GGGRP MAQ+GG N Sbjct: 827 LSTISND-KVSLIVGVTNDLTAKIKAGDLISFVAQQV-GGKGGGRPDMAQAGGSNITALP 884 Query: 887 QAIAGVASFLK 897 A+A V ++ Sbjct: 885 AALASVEEWVN 895 >gi|261492574|ref|ZP_05989127.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311733|gb|EEY12883.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 875 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 374/911 (41%), Positives = 545/911 (59%), Gaps = 55/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FLEFFQ GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ ++ IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + +K + + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKD--LDNKSLRVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + +LG E L+P L T MG A L Q + I++T Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGTKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + + L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID FN + QR RA+A S + + ++ + T F GY + Sbjct: 418 K-IDEDGFNAEMTAQRERAKA------SSSFGTDYNNVIKVDSKTCFSGYTETSLND--- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V + G+ VE SG+ V+ D+TPFYAE GGQ+GD Sbjct: 468 -------------------ATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + ++ D QK +F H + G L + +D + R +++NHSAT Sbjct: 509 SGQISAEICNFEVVDTQKYG-QVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD++ + IT ++L+ +E VN + +N+ V+ Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A A GA AL G KY + VRVV + S LCGGTHV TG+I L I Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRVVEM-----SDFSIELCGGTHVKQTGDIGLFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE ++ AG+RRIEA+TG+ A + L + ++ A LK + V ++ ++ E+ ++ Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +I VN + + V+ K L++++D L+ ++ S ++ Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + E K ++++ VT+DL D+ NA L A+ + GG GGGRP MA +GG Sbjct: 803 V-FATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860 Query: 886 DQAIAGVASFL 896 QA++ ++ Sbjct: 861 LQALSLAQEWI 871 >gi|75675479|ref|YP_317900.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] gi|123613615|sp|Q3ST43|SYA_NITWN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|74420349|gb|ABA04548.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] Length = 891 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 464/901 (51%), Positives = 613/901 (68%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F NGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNYFAANGHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+ AF LWKKI+GL +IIRI +DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDRLTATVYIDDDGAFDLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E +G+R++EIWNLVFMQ+E+ R LPK SIDTG GLER+A VLQ Sbjct: 181 DRIPGGPPGSPEQDGDRFVEIWNLVFMQYEKLPDGSRPNLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG A+PEL +A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L + ++ +G+ AF LYDT+G PLD+ QD L ARG G+D+ SF Sbjct: 361 KTLERGLSILDEKSASLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDLASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G E IWF L+EK GAT+F+GY+ Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ GE + +G+ +V +QTPFY E+GGQ+GDTG I DG+ Sbjct: 462 -----TEAAEGVVAALVKDGEEADTLKAGESGAIVLNQTPFYGESGGQVGDTGFLIADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD QKKA +FVH VE+G+L M+L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTDTQKKAGDLFVHLGTVEQGVLAPGMALALEVDHDRRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI++ EL+ IED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISADELRCIEDIANDVVLENGEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ D S LCGGTHV TG+I L+ +V Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGTDRHGAASNALGWSVELCGGTHVKRTGDIGLISVVG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ +G+RRIEA+TG +AR H + K+ A L+ S ++ R+ + EE +KL+ Sbjct: 697 ESAVASGVRRIEALTGHQARHHANHAIQLAKTAAGELRTSLDDMPARIASLMEERKKLER 756 Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ + +L + + + M+ + ++ K+LKS+ D +K++ SG Sbjct: 757 ELSEARKKLAMGGAASASSGATTGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ LV S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 VVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|259909418|ref|YP_002649774.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|224965040|emb|CAX56571.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|283479495|emb|CAY75411.1| alaS [Erwinia pyrifoliae DSM 12163] Length = 876 Score = 923 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 391/910 (42%), Positives = 556/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF LI++ Q+TG + + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQLTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL+RGL LLD L +L + L+G+ F+LYDT G P D+ D+ R L Sbjct: 361 KTEEEQFAKTLERGLALLDEELENLQ-SDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F +A+E+QR RAR S + ++ A++F GY L+ Sbjct: 420 -IDEAGFERAMEQQRQRARDASGFGC------DYNNVIHIDQASEFKGYQQLQ------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ + AI G+ + +G++ +V D TPFYAE+GGQ+GDT Sbjct: 466 ----------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ L +++ QK A+ H + G LR + +D R ++ +NHSATH Sbjct: 510 GELQGNSASLIVSNTQKYAQ-AIGHSGKLATGELRVGERVAAQVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + LRFD +H + +T E++ +E+ VN I +NLP+ T Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH + TG+I L I Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q+++L ++ +K + N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + +S+V+ K L++++D L+ ++ S II+ Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861 Query: 887 QAIAGVASFL 896 A+AGV ++ Sbjct: 862 AALAGVELWV 871 >gi|330446966|ref|ZP_08310617.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491157|dbj|GAA05114.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 874 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 379/909 (41%), Positives = 536/909 (58%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 3 MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 ADRLVVTVYETDDEAFDIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A ++Q +NY+ID+F+ LI+ + +V G + + RV+ DH+RS ++LI+DG++P Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFDD--LSNQSLRVVADHIRSCAYLISDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + L+E+ L+ Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E++ FG+TLDRGL +L+ L +L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEDNFGRTLDRGLTILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+EEQR RAR +G + + T+F GY G Sbjct: 419 IDEEGFEAAMEEQRQRAR------DAGNFGVDYNDAIKVDAETEFCGYSATDG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ + G V+ +G+ VV TPFYAE+GGQ GD+G Sbjct: 466 ----------------EGEIVALYRDGVAVDSVNAGEDALVVLTNTPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+ + D QK H V G L L ++D R +S+NHSATHL Sbjct: 510 ILTAEGVLFNVADTQKFGA-AIGHKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL ILG HV+Q GS + DGLRFD ++ + + +L+++E VND I N + T Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVEIMVNDQIRDNHAIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGG H + TG+I L I+S Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG A + +D L A +K +VV +VE + ++L+ Sbjct: 684 ESGIAAGIRRIEAVTGAAAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +I V + ++ D+K L+ ++D L+ ++ SG+++L Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +S + K ++ VT+DL+ + A +L L A+ + GG GGGRP MAQ+GG + Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861 Query: 888 AIAGVASFL 896 A+ VA +L Sbjct: 862 ALETVAPWL 870 >gi|197104453|ref|YP_002129830.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1] gi|196477873|gb|ACG77401.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1] Length = 880 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 437/904 (48%), Positives = 582/904 (64%), Gaps = 34/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IRT FL+FFQ+ H ++PS+ L+P NDPTL+F N+GMVPFKN FTG E + Sbjct: 1 MASLNEIRTHFLDFFQRKEHAVVPSAPLVPQNDPTLLFVNAGMVPFKNYFTGAEASPWPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI AW+LLTKE+ L Sbjct: 61 AASSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISHAWELLTKEWAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY D+EA LWKKI+GL KI+RI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PVEKLMVTVYHTDDEAAALWKKIAGLPDHKIVRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E IPGG P E+G+R++EIWNLVFMQFEQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 EHIPGGPPGSPDEDGDRFVEIWNLVFMQFEQFADGTRADLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD+DLFK LI S + + +HRVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDVDLFKDLIA-STKAQLRAEGSDTTPSHRVIADHLRSSSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM + P L MG AYPEL +A+ I ETLR E+ERF Sbjct: 300 VLRRIMRRAMRHAHLLGADEPLMHRVAPTLVNLMGEAYPELRRAEPAIVETLRQEEERFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RG+ LL+ + L ++L+G+ AFKLYDT+G PLD+ QD + A+GL +++ F Sbjct: 360 RTLGRGMTLLEEATAGLKDGDVLSGETAFKLYDTYGFPLDLTQDAVRAKGLT-VNLDEFE 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+ QR AR + +G G WFS++++ G + F GYD Sbjct: 419 QAMARQREMARENWVGSGQVAAAAEWFSIRDRLGPSDFTGYDNTE--------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + +V +G+ +E A +GQ+V+ +FD+TPFYAE+GGQ GD G G Sbjct: 464 --------ATGELLVLVSEGQEIERAGAGQRVQALFDRTPFYAESGGQAGDQGEVEWQGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TDVQK+A + VH + G L + L +D + R NHSATHLLH AL Sbjct: 516 RARVTDVQKQAGDLHVHDLEILEGELVPGARVRLAVDAERRASTRSNHSATHLLHAALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H +P+T+ E++ IE VN ++ QNLP T+ M ++A Sbjct: 576 VLGKHVTQKGQMVDGERIRFDFSHGQPLTAEEIERIEAEVNAVVRQNLPAQTKNMRPQEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 I +GA AL G KY D VRV+++ G +S LCGGTHV+ TG+I L IVSE + Sbjct: 636 IDAGAMALFGEKYGDSVRVLTLGRALDGEGDYSVELCGGTHVARTGDIALFKIVSEQGVA 695 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG+ AR +L+ Q KSLA KV V R+E + + RKL+ A Sbjct: 696 AGVRRIEALTGEAARRYLLEQASVAKSLAEQFKVPVSEVSARIEALQAQARKLEKELADA 755 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + +I V M+ ++ V K+L+ + + +K++ G+I LVG++ Sbjct: 756 KRQLAMGGGGGAAAGPEEIGGVKVMARVMEGVGGKDLRPIAEEFKKQLPDGVIALVGVA- 814 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA+V + VT +FNA +LA+ + +GG G GGRP AQ G P+ +KA + +A V Sbjct: 815 DGKAAVTVAVTGSATAKFNAAELAKAAVLAMGGQGAGGRPDFAQGGAPDASKAAEGLAAV 874 Query: 893 ASFL 896 + L Sbjct: 875 KALL 878 >gi|114320637|ref|YP_742320.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] gi|122311690|sp|Q0A8K7|SYA_ALHEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114227031|gb|ABI56830.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] Length = 869 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 374/903 (41%), Positives = 526/903 (58%), Gaps = 46/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR FLEFF+ GH ++PSS L+P NDPTL+FTN+GMVPFK++F G+E+ Y Sbjct: 1 MKSSAEIRNAFLEFFEHRGHTVVPSSPLVPANDPTLLFTNAGMVPFKDVFLGKEQRGYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT+ L Sbjct: 61 ACSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWEFLTRTIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 RL++TVY+ED+EA +W G+ ++ RI DNFWSM +TGPCGPCSEIF+D Sbjct: 121 PAERLWVTVYEEDDEAADIWLNEIGVDPERFGRIGAADNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+RY+EIWNLVFMQ+++ + LP +DTGMGLER+A V+Q Sbjct: 181 PEVPGGPPGSPEEDGDRYVEIWNLVFMQYDRDAEGRLAPLPMPCVDTGMGLERLAAVVQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +N++IDLF+ LI A+ + G+ E ++ + +VI DH+R+ +FLI DG++PAN+GRGY Sbjct: 241 VHSNFEIDLFRRLIGAAAALAGLP-EDSDNASLKVIADHIRACAFLITDGVVPANDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG EP L+ L EMG A+PEL + + L+E L E++RF Sbjct: 300 VLRRIIRRAVRHGYKLGIDEPFFHRLVQPLADEMGGAFPELPERQALVERLLLQEEQRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LL+ L L EI G+ FKL DT+G P+D+ DI R L +D+ F Sbjct: 360 ETLEQGLKLLEEDLRQLTGAEI-PGETVFKLADTYGFPVDLTADIARERDLT-LDMAGFE 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR RARAHS + + G + FIGYD L G Sbjct: 418 ACMAAQRERARAHSQFKVQHGEGEQF------EGESHFIGYDQLEGH------------- 458 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A+ + G V+ +G++ V+ DQTPFYAE+GGQ+GD G G Sbjct: 459 ----------GEVLALFRDGRSVQTLSAGEEGMVILDQTPFYAESGGQVGDQGVLETAGG 508 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + K H + G + L +D + R ++NHSATHLLH AL Sbjct: 509 EVFEVRDTLKQGEGHGHLGRLREGRIHVGDRLRAQVDAETRWATALNHSATHLLHAALRG 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV Q GS + PD LRFD H + ++ +L+ IE VND I N M +DA Sbjct: 569 VLGTHVQQKGSLVAPDRLRFDFAHYEAPSTEQLEQIERIVNDEIRANRAADIEHMAYDDA 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I +GA AL G KY D+VRV+ G S LCGGTHV TG+I L ++SE + G Sbjct: 629 IETGAMALFGEKYGDQVRVLRF-----GEFSIELCGGTHVERTGDIGLCKLISEGGVAGG 683 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG RA + +++L +A +K S N RV ++ + + + + K Sbjct: 684 VRRIEAVTGDRAVMWVQRTEQRLVQVAETVKASPDNAAVRVAQLVDRLKGQEKELERLKQ 743 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + S I V ++ + + D+K L+ +D L+ K+ + +I+L ++ + Sbjct: 744 KLASQAGSDLAGQAVDIGGVKVVAARV-DADNKALRDTVDQLRNKLGTAVIVLGAVAGD- 801 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++ V++D DR A DL R A+ + GG GGGRP AQ+GG + A+A V S Sbjct: 802 KVRLVAGVSKDCTDRIKAGDLVRQVAEQV-GGKGGGRPDFAQAGGEQPEHLETALASVES 860 Query: 895 FLK 897 ++ Sbjct: 861 LVR 863 >gi|170765841|ref|ZP_02900652.1| alanyl-tRNA synthetase [Escherichia albertii TW07627] gi|170124987|gb|EDS93918.1| alanyl-tRNA synthetase [Escherichia albertii TW07627] Length = 876 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 398/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + L+E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQALVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +S V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LSGKVTALFVDGKAVDVINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLNVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLGEIAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|310766672|gb|ADP11622.1| Alanyl-tRNA synthetase [Erwinia sp. Ejp617] Length = 876 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA +W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEALDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF LI++ Q+TG + + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQLTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL+RGL LLD L +L + L+G+ F+LYDT G P D+ D+ R L Sbjct: 361 KTEEEQFAKTLERGLALLDEELENLQ-SDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F +A+E+QR RAR S + ++ A++F GY L+ Sbjct: 420 -IDEAGFERAMEQQRQRARDASGFGC------DYNNVIHIDQASEFKGYQQLQ------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ + AI G+ + +G++ +V D TPFYAE+GGQ+GDT Sbjct: 466 ----------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ +++ QK A+ H + G LR + +D R ++ +NHSATH Sbjct: 510 GELQGNSASFIVSNTQKYAQ-AIGHSGKLATGELRVGDRVAAQVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + LRFD +H + +T E++ +E+ VN I +NLP+ T Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH + TG+I L I Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q+++L ++ +K + N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + +S+V+ K L++++D L+ ++ S II+ Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861 Query: 887 QAIAGVASFL 896 A+AGV ++ Sbjct: 862 AALAGVELWV 871 >gi|260913378|ref|ZP_05919859.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325] gi|260632609|gb|EEX50779.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325] Length = 874 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 384/912 (42%), Positives = 541/912 (59%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHTKGHQIVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++I+RI N DNFW M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI ++TG K + RV+ DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKD--LTNKSLRVVADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M SA ++ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIEAMASAGIQVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + +E L+G VAFKLYDT+G P D+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLTLLDEALNQVKDNE-LSGKVAFKLYDTYGFPFDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + +E QR RA++ S + ++ G T F GY Sbjct: 418 T-IDEAGFEREMEAQRLRAQSASQFGM------DYNNVIRMDGVTVFEGYTESETL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ +G+ VE +GQ ++ D TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFCEGKPVERVEAGQSAVIILDNTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G ++ D QK +F H V G L + +D + R + S+NHSAT Sbjct: 508 AGRLDGQDFAFEVEDTQKYGR-VFGHIGKVTIGSLAIGQLVNAVVDVERRHRTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG+HV Q GS ++ LRFD H + IT +L IE VN I N + Sbjct: 567 HLLHAALRQVLGTHVVQKGSLVSDVALRFDFAHPEAITKEQLIEIERVVNQQIRANHVIQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ E A A GA AL G KY D+VRV+++ G S LCGG H TG+I L + Sbjct: 627 TEIMDLEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCKV 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E++I AG+RRIEAITG+ A + L Q L A LK ++V ++ + E+ +K Sbjct: 682 IAETAIAAGVRRIEAITGENAITWLQEQQALLAQSAELLKSDVNSIVDKINQQQEKLKKT 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K ++ V+ S I V+ + ++ VDSK L+ ++D L+ ++ S +I Sbjct: 742 EKELLSLKEKVAVQAGSDLAKNAININGVSVIIQQLNGVDSKSLRVMVDDLKNQLGSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + E K ++++ V+ DL + A +L + A+ + GG GGGRP MA +GG K Sbjct: 802 AFASV-IEGKVNLIVGVSNDLTAKVKAGELVNVLAQEV-GGKGGGRPDMAMAGGTQVEKV 859 Query: 886 DQAIAGVASFLK 897 QA+ + +LK Sbjct: 860 SQALLVGSEWLK 871 >gi|307292727|ref|ZP_07572573.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1] gi|306880793|gb|EFN12009.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1] Length = 884 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 438/904 (48%), Positives = 596/904 (65%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL ++IIRI T DNFW+M ++GPCGPCSEIF+D G Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ+ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD D FK LI+ S +T +G + +HRVI DHLRS+SFLIADG+LPANEGRGY Sbjct: 241 VHNNYDTDTFKALIEESGALTKTATDGEHQASHRVIADHLRSTSFLIADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+P+L +EMG AY EL++A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHIIGSKEPLMHRLVPSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD L + L G+ AFKLYDT+G P D+ +D L +RGL G+D F+ Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ++ ARA G G +++IWF + EK G T+FIGY +G Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGYSSTQG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V AIV+ G + A +G+ V +V +QTPFY E+GGQ+GD G Sbjct: 466 ---------EGEVVAIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516 Query: 540 RL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + D K + H A + G ++ ++ L++D R ++ NHSATHLLH AL Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSIKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + PD LRFD +H + +T +++ +IE +VN+ + N V TR+M +D Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHSQIAAIEADVNEQVRHNEAVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA AL G KY D VRV+S+ D +S LCGGTHV +TG+I + I+SES++ + Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG+ AR L ++++L+ A+ LK + V R+ + E+ R+L+ A+ K Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRRLERELAEAK 756 Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 L + K+ VNF+ +I +D KEL+ ++D + + SG+ ++ + Sbjct: 757 KALALGGGGSAQAAGPEKVGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAVLAVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 E +A++ + VT+DL+ +AVDL R + LGG GGGGRP MAQ GGP G+KA+ AI V Sbjct: 816 EGRATIAVGVTDDLVGTISAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGDKAEAAIEAV 875 Query: 893 ASFL 896 + L Sbjct: 876 KAAL 879 >gi|53725058|ref|YP_102626.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|67639261|ref|ZP_00438139.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4] gi|254177470|ref|ZP_04884125.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|254199562|ref|ZP_04905928.1| alanyl-tRNA synthetase [Burkholderia mallei FMH] gi|254205880|ref|ZP_04912232.1| alanyl-tRNA synthetase [Burkholderia mallei JHU] gi|59798500|sp|Q62KZ3|SYA_BURMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52428481|gb|AAU49074.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|147749158|gb|EDK56232.1| alanyl-tRNA synthetase [Burkholderia mallei FMH] gi|147753323|gb|EDK60388.1| alanyl-tRNA synthetase [Burkholderia mallei JHU] gi|160698509|gb|EDP88479.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|238519796|gb|EEP83263.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4] Length = 874 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 537/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGR MAQ+GG K Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRSDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|301155669|emb|CBW15137.1| alanyl-tRNA synthetase [Haemophilus parainfluenzae T3T1] Length = 874 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 547/911 (60%), Gaps = 56/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRQADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI + +V G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A E+ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + D +L+G+VAFKLYDT+G PLD+ D+ R Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERD- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + +E QR RA++ S + ++ G T+F GY Sbjct: 417 IAIDEAGFEREMEAQRLRAQSASQFGM------DYNNVIRVEGETKFEGYTESESL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ V+ +GQ V+ + TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFHDGKSVDSITAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G GI+ + D QK +F H +E+G L+ ++ +D R Q S+NHSAT Sbjct: 508 SGYLTSQGIQFNVKDTQKYG-QVFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV Q GS ++ LRFD H + IT A+L IE VN + +N V Sbjct: 567 HLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M+ E A A GA AL G KY+D VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDVMDIEAAKAKGAMALFGEKYSDVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+E+++ AG+RRIEA+TG+ A + L Q L A K +V +++++ ++ +K Sbjct: 682 VAETAVAAGVRRIEAVTGENAINWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKKA 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI DV+ + H + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + I + K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 VFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFL 896 + A+ ++L Sbjct: 860 NLALTVAQNWL 870 >gi|94498454|ref|ZP_01305011.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58] gi|94422102|gb|EAT07146.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58] Length = 884 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 443/904 (49%), Positives = 598/904 (66%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y+ Sbjct: 1 MTSTNDIRRSFLDYFGGNGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETRPYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL TVY D+EAF LWKKI+GL ++IIRI T DNFW+M ++GPCGPCSEIF+D G Sbjct: 121 PADRLTATVYHTDDEAFDLWKKIAGLPEERIIRIATKDNFWAMGDSGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ+ + LP+ SIDTGMGLER+A V+Q Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPRPSIDTGMGLERVAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYD D FK LI S ++ +G + +HRVI DHLRS+ FLIADG+LPANEGRGY Sbjct: 241 VTDNYDTDTFKALIAESGALSRTATDGAHKASHRVIADHLRSTGFLIADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+ +L +EMG AYPEL++A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMYRLVSSLVSEMGGAYPELVRAQPLIEETLLREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+ GL LLD L + L G+ AFKLYDT+G P D+ +D L +RGL +D F+ Sbjct: 361 KTLENGLKLLDEATGDLAEGGTLAGETAFKLYDTYGFPYDLTEDALRSRGLT-VDRAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ++ ARA G G +++IWF + EK G T+FIGY Sbjct: 420 AAMAEQKAAARAAWKGSGEKASDEIWFDIAEKAGNTEFIGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V AIV+ G + A +G V +V +QTPFY E+GGQ+GD G G Sbjct: 461 ----ATTQGEGEVLAIVKDGVNFDSAAAGDTVTIVTNQTPFYGESGGQMGDAGRITTQGG 516 Query: 540 RLQITDVQKKA-EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + D K + HHA +E G ++ ++ L++D R ++ NHSATHLLH AL Sbjct: 517 FVALVDDTAKPLGRVHAHHATIEAGSIKVGDTVHLSVDVDRRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + D LRFD +H + +T A++ +IE +VN + N V TR+M +D Sbjct: 577 KELGAHVTQKGSLVAADRLRFDFSHPEALTHAQIAAIEADVNAQVRHNEEVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+A+GA AL G KY D VRV+S+ D +S LCGGTHV +TG+I L IVSES++ + Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRGDDAHYSVELCGGTHVRATGDIALFKIVSESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG+ AR L+ +D+KL+ A+ LK + +V R+ + E+ RKL+ A+ K Sbjct: 697 GVRRIEALTGEAARLWLVERDDKLRQTAAALKTTPEDVPTRIAALVEQSRKLERELAEAK 756 Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 L + S KI +++F+ +I +D KEL+ ++D + + SG+ ++ + Sbjct: 757 KALALGGGSAAQTAGPEKIGNIDFLGQVIEGLDPKELRGIVDQNKATLGSGVSAVLAVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + +AS+ + VT+DL + +AVDL R + LGG GGGGRP MAQ GGP+G+KA A+ V Sbjct: 816 DGRASIAVGVTDDLKGQISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKATAALDAV 875 Query: 893 ASFL 896 + L Sbjct: 876 KTAL 879 >gi|161525078|ref|YP_001580090.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|189350179|ref|YP_001945807.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|205830000|sp|A9AC16|SYA_BURM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160342507|gb|ABX15593.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|189334201|dbj|BAG43271.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] Length = 874 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + N + +VI DH+R+ +FLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEVSD--LNNNSLKVIADHIRACAFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|319897692|ref|YP_004135889.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031] gi|317433198|emb|CBY81572.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031] Length = 874 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 383/913 (41%), Positives = 546/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+F N+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFANAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK I + ++ G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTFIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + D IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F++ +E QR+RA++ S + S+ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQSASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ + D QK +F H + +G L+ S+ +D + R +S+NHSAT Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNISLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIEILVNQKIRANFPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ++E+++ AGIRRIEA+TGQ A L Q L LK +V +++++ ++ +K+ Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSTDLLKSDVNTLVEKIQQLQDKTKKV 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ ++ + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 I ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFLKK 898 QAI +L K Sbjct: 860 AQAIKVAQDWLNK 872 >gi|294141935|ref|YP_003557913.1| alanyl-tRNA synthetase [Shewanella violacea DSS12] gi|293328404|dbj|BAJ03135.1| alanyl-tRNA synthetase [Shewanella violacea DSS12] Length = 874 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 384/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++RT FLE+F KNGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRTAFLEYFHKNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E + + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITYAWNFLTQELKIPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D EA+ +W K G+S D +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGVSEDNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG P E+G+R+IEIWN+VFMQ+ +Q+ + LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGDMLALPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ + + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L MG A L++ + ++ ++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLILVMGDAAKGLVETQDIVVKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LDG L+ L ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDGALNALT-GKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQR RA+A G + + T+F GY L Sbjct: 420 EAGFELAMSEQRKRAQAA------GQFATDYNDSLKIDEETEFSGYLDLVS--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + AI ++GE V E +G++ VV D TPFY E+GGQ GD+G Sbjct: 465 --------------NAKITAIYKEGESVTEINAGEEAVVVLDTTPFYGESGGQSGDSGTL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + D QK H ++ G L SL ++D R++ +NHS THLLH Sbjct: 511 SAAGFDFIVKDTQKYG-QAIGHIGTLKTGSLSLGQSLEASVDKALRQRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + EL+++ED VN I N + ++M Sbjct: 570 AALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNTQIRCNHELTAQVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 TIDAAKDKGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ GQ +L A LK G+VV +++ + ++L+ Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAGQKSELDKAAKLLKADAGSVVTKLKAQLDRTKQLEKEL 744 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K +L +I V + + V+ L+ ++D L++K+ SGI++L G Sbjct: 745 SQLKDKLAAATSADLAGEAQEINGVKVLIKKLDGVEPGALRGLLDELKQKLGSGIVVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ + K ++++ VT+DL + A +L A + GG GGGRP MAQ+GG D A+ Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVANIAAQV-GGKGGGRPDMAQAGGSKPENLDAAL 862 Query: 890 AGVASFLKK 898 VAS+L++ Sbjct: 863 NQVASWLQE 871 >gi|194290351|ref|YP_002006258.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424] gi|193224186|emb|CAQ70195.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424] Length = 874 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 390/910 (42%), Positives = 538/910 (59%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 61 TSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKTYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++I+RI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIE+WNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + T + N + +VI DH+R+ +FLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHID--NLNQNSLKVIADHIRACAFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+P L +MG AYPEL +A+ + E L++ Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGQKTPFFHKLVPDLVEQMGQAYPELAEAQSRVTEVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD L+ L + L+G++AFKL+DT G PLD+ QD+ + Sbjct: 359 EEERFFETIENGMAILDAALAELKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQ-EI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 G+D +F+ A+ QR +ARA + L+ T F GY+ L Sbjct: 418 GVDEAAFDAAMSRQREQARAAGKFKMAAG-------LEYIGDKTVFHGYEKLELP----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V+ GQ VV D TPFYAE+GGQ GD Sbjct: 466 -----------------QAKVTALYVDGAAVDTMQPGQTGVVVLDNTPFYAESGGQAGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D K +F H ++ G L+ ++ +D R + NHSATH Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLQGGALKVGDAVSAQVDALRRARTVRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD +H+ +T A+++ +E+ VN I +N Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDAQIRQVEEIVNAEILRNEDTHA 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA+ SGA AL G KY D VRV+S+ S LCGGTHV TG+I L IV Sbjct: 629 EVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A +L G D KL A+ LK +V R+ ++ E+ R L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNALHYLQGLDAKLNEAAAVLKAQPSELVPRIGQVQEQVRALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L + + ++ + D K L+ MD L+ K+QS I+ Sbjct: 743 KELERLKSKLAASQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LGAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFL 896 QA+AGV+ ++ Sbjct: 861 QALAGVSEWV 870 >gi|257454192|ref|ZP_05619462.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] gi|257448365|gb|EEV23338.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] Length = 890 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 367/915 (40%), Positives = 526/915 (57%), Gaps = 52/915 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR F+ +F +NGH + SSSL+P NDPTL+FTN+GM FK++F G +K Y+ Sbjct: 6 SSADIRQAFINYFAENGHTPVASSSLVPHNDPTLLFTNAGMNQFKDVFLGIDKRDYKRAV 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI W+ LT K L Sbjct: 66 SSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQQAIPFCWEFLTSDKWLGL 125 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +LY+TVY D+EAF +W + GL A++IIRI N DNFW+M +TGPCGPC+ Sbjct: 126 PKDKLYVTVYHTDDEAFDIWHNVVGLPAERIIRIGDNKGGQYQSDNFWAMGDTGPCGPCT 185 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E+F+D GE I GGLP E+G+R++EIWN VFMQF +Q LP S+DTGMGLER Sbjct: 186 EVFYDHGEHIWGGLPGTPEEDGDRFVEIWNNVFMQFNRQKDGTLEKLPAPSVDTGMGLER 245 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ++ ++Q +NY+ID+F HL+Q + QV + + + +V+ DH+RS SFLIADG+ Sbjct: 246 ISAIMQGVHSNYEIDIFTHLMQHAAQVIGLPNDIDLQSEPSLKVLADHIRSVSFLIADGV 305 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + + IE+ Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGNKLGATDNFFYKLVAPLAQIMGDAYPQLREQQANIEQA 365 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + E+E+F KTL +GL LL L L + L+G FKLYDT+G P D+ DI+ R Sbjct: 366 ILKEEEQFAKTLSQGLKLLSQELDSLKSGDTLSGATVFKLYDTYGFPADLTADIVRERD- 424 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F Q + +QR+RAR G + L + AT+F+GYD Sbjct: 425 ISIDEAGFEQGMAQQRARAREA------GKFGVDYNQLIQVDSATEFLGYDKAEH----- 473 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 SS + + +G+ E+ G + +V TPFYAE GGQ G+ Sbjct: 474 ------------------SSTITHLYLEGKSAEQLQEGDEGVIVLSATPFYAEGGGQAGE 515 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + ++ D +K + I H +V+ G +R S + Q R + NHSAT Sbjct: 516 LGDIQTETGVFEVQDTKKSGQAIIH-HGVVKMGSIRQGQSSEARVASQVRAMSAKNHSAT 574 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL LG+ V+Q GS + + LRFD ++ K +T ++ +IE+ VN I N P Sbjct: 575 HLLHAALREHLGTGVTQKGSLVNSEVLRFDFSYDKALTEQDIITIENIVNQQILANQPAT 634 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLL 708 +++ A GA AL G KY D VRV+S+ +DG S LCGG HV TG+I L Sbjct: 635 VEMLSMTQAQDKGAMALFGEKYGDTVRVLSMGTVDKDGKPFSIELCGGLHVQRTGDIGLF 694 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE I AGIRRIEA+TG A ++ +++L LAS LK + + RV ++ ++ R Sbjct: 695 KIVSEQGIAAGIRRIEAVTGMGAVKYVQQGEKQLNQLASQLKAKRDEIADRVNQMTDKTR 754 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ + + +L I + + +D K L+++ D ++ K+ G Sbjct: 755 DLEKQLERLQQKLASSQAKDLINNVQDINGQKVLIASLPGMDGKALRTIADDMKSKLHDG 814 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I++L G++ + K ++ V +DL + A D+ + ++ L GG GGG+P AQ G + Sbjct: 815 IVVLAGVA-DDKIALTASVGKDLTSKIKAGDIIKHLSEQL-GGKGGGKPDFAQGGATDVA 872 Query: 884 KADQAIAGVASFLKK 898 + + ++L + Sbjct: 873 GLPTVLDALPNWLAE 887 >gi|85715195|ref|ZP_01046179.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A] gi|85698110|gb|EAQ35983.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A] Length = 892 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 465/902 (51%), Positives = 610/902 (67%), Gaps = 42/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL FF N H+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNFFAANDHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+EAF LWKKI+GL +IIRI DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDRLTATVYIDDDEAFDLWKKIAGLPESRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R++EIWNLVFMQ+E+ + R LPK SIDTG GLER+A VLQ Sbjct: 181 DRIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLSDGSRPNLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG AYPEL +A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAYPELQRARSLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L ARG G+D+ SF Sbjct: 361 KTLDRGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDLASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G E IWF L+EK GAT+F+GY+ Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+VQ G+ + +G+ +V +QTPFY E+GGQ+GDTG DG+ Sbjct: 462 -----TESAEGVVVALVQDGKETDILKAGESGAIVLNQTPFYGESGGQVGDTGALTADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD QKKA +FVH IVE+G+L M+L L +D+ R + NHSATHLLH AL Sbjct: 517 CFRVTDTQKKAGDLFVHLGIVEQGVLAPGMALALEVDHDRRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI+ EL+ IED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISGDELRRIEDIANDVVLENGEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ ++S Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGAGRQGAPSNALGWSVELCGGTHVKRTGDIGLISVIS 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ +G+RRIEA+TG RAR H + K+ A L+ S ++ R+ + EE +KL+ Sbjct: 697 ESAVASGVRRIEALTGHRARHHANDAIQLAKTAAGELRTSLDDMPARIAALVEERKKLER 756 Query: 773 IHAKRKLQLNV----------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ + +L + + + M+ + ++ K+LKS+ D +K++ S Sbjct: 757 ELSEARKKLAMGGGAASASSGAATGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGS 816 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G++ LV S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 GVVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDG 876 Query: 883 NK 884 K Sbjct: 877 AK 878 >gi|331017460|gb|EGH97516.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 874 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 389/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P++EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R E+E+F KTL++GL +++ L+ L ++ G++ FKLYDT+G P+D+ DI R L Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++D K F+HH +V G L + + + + R +NHSATH Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|28869047|ref|NP_791666.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] gi|37999391|sp|Q885J0|SYA_PSESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28852287|gb|AAO55361.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] Length = 874 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 389/912 (42%), Positives = 538/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P++EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R E+E+F KTL++GL +++ L+ L ++ G++ FKLYDT+G P+D+ DI R L Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ + G+ V +G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKDGQSVTHLNAGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++D K F+HH +V G L + + + + R +NHSATH Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|127512149|ref|YP_001093346.1| alanyl-tRNA synthetase [Shewanella loihica PV-4] gi|205830205|sp|A3QC89|SYA_SHELP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126637444|gb|ABO23087.1| alanyl-tRNA synthetase [Shewanella loihica PV-4] Length = 874 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 385/909 (42%), Positives = 557/909 (61%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLEFF++NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRSAFLEFFRRNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRDYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+E L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY+ D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTVYETDDEAFEIWNKEIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG P E+G+R+IEIWN+VFMQ+ +Q LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGTMDPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G+ + RV+ DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQSLIKKTAEILGVTD--LENKSLRVVADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A EL+ + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKELVATQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L E L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDNALSQLEGKE-LDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T+F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQAA------GQFDTDYNDSLKIDAETEFCGYSDLNG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V + G+ V+ G + VV D TPFY E+GGQ GD G Sbjct: 465 --------------EAKVIGLYVDGQAVDALAEGDQGVVVLDSTPFYGESGGQCGDKGLL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G+ ++ D QK H +V+ G + +L +D + R + +NHS THLLH Sbjct: 511 SAEGVEFEVKDTQKYG-QAMGHIGLVKAGSIAMGQTLNAAVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + ELK +ED VN I +N + +M Sbjct: 570 AALRQVLGTHVSQKGSLVEPERLRFDFSHFEAVKREELKQVEDLVNTQIRRNHELKAEVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DIDQAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q +L+ AS LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGIRRIEAVTGAAAIAYVGEQQAQLEQAASLLKGDSASVVAKLKAQLDKTKQLEKEL 744 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K +L ++A V + ++ V++ L+ + D L++K+QSGI++L G Sbjct: 745 SQLKDKLAAATSADLAGEAQELAGVKVLVKLLEGVEAGALRGLQDELKQKLQSGIVVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ + K +++ VT+DL + A +L + A + GG GGGRP MAQ+GG K A+ Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPEKLAGAL 862 Query: 890 AGVASFLKK 898 V +L + Sbjct: 863 DSVIPWLSE 871 >gi|88860236|ref|ZP_01134874.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2] gi|88817434|gb|EAR27251.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2] Length = 866 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 390/903 (43%), Positives = 531/903 (58%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F H+ + SSSL+P NDPTL+FTN+GMV FK++F G +K Y Sbjct: 4 MTTAQIRQAFLDYFSSKQHQAIASSSLVPGNDPTLLFTNAGMVQFKDVFLGADKRPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT L Sbjct: 64 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTTVLKLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L +TVY D+EAF +W K GL AD+IIRITT DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 124 TEKLLVTVYHTDDEAFDIWHKQVGLPADRIIRITTTDNFWSMGDTGPCGPCSEIFYDHGD 183 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS+ E+G+R+IEIWNLVFMQF + LPK S+DTGMGLER++ ++Q Sbjct: 184 DIWGGPPGSAEEDGDRFIEIWNLVFMQFNRHADGSMEPLPKQSVDTGMGLERISAIMQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID+F+ LI+A+ VT + + RVI DH+RS +FLIADG++P+NEGRGYV Sbjct: 244 HSNYEIDIFQGLIRAAADVTNAQD--LEDKSLRVIADHIRSCAFLIADGVMPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + L+ AL +MG AY EL + + +IE+ LR E+E+F K Sbjct: 302 LRRIIRRAVRHGNKLGAKDNFFHKLVGALAEQMGDAYQELYKQREIIEKVLRIEEEQFSK 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL +L+ L + +++ GDV FKLYDT+G P D+ D+ R + ID F Sbjct: 362 TLERGLAILEDGLKDIT-GDVIPGDVVFKLYDTYGFPADLTADVARERFMT-IDEPGFQA 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + QR A+ G + + T F GY+ Sbjct: 420 CMAAQRKMAQQA------GKFGTDYNEQLKSDKHTDFKGYEH------------------ 455 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S V + +G+ V GQK VV D+TPFYAE+GGQ GD G G Sbjct: 456 -----EHFSGTVIELFFEGQSVNSLADGQKGIVVLDRTPFYAESGGQAGDKGILKIAGGE 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + + K H V +G + + ID R + NH+ATHLLH AL + Sbjct: 511 FSVYNTTKLGNAF--AHTGVIQGQIALNDRVDAQIDTTRRDNIRKNHTATHLLHEALRQV 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + + LRFD +H + +T A+L IE VN I +N+ + T +M +DA Sbjct: 569 LGEHVGQKGSLVESERLRFDFSHFEGVTKAQLIEIELMVNAEIRRNVDLQTELMQIDDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY+D VRVVS+ G S LCGGTHV G+I L IVSES I AGI Sbjct: 629 AKGAMALFGEKYDDEVRVVSI-----GEFSIELCGGTHVKRLGDIGLFKIVSESGIAAGI 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A + Q E L +A+ +K + V +V + E + L+ + + Sbjct: 684 RRIEAVTGAAAIEVMHHQAEVLNHIAALVKSDANSAVEKVTALVERTKGLEKEINQLNDK 743 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S +IA V + ++ +SK L+ ++D L+ K+ SG+I L G+++ K Sbjct: 744 LASAAGAGLLDSVIEIAGVKVLIANVAGTESKALRGMVDDLKNKLGSGVIAL-GVAEGDK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+DL +F A +L A+ + GG GGGRP MAQ+GG A+ VA++ Sbjct: 803 VSLITGVTKDLTGKFKAGELVNFMAQQV-GGKGGGRPDMAQAGGSEPEHLASALDSVAAW 861 Query: 896 LKK 898 + + Sbjct: 862 ISE 864 >gi|90580351|ref|ZP_01236158.1| alanyl-tRNA synthetase [Vibrio angustum S14] gi|90438653|gb|EAS63837.1| alanyl-tRNA synthetase [Vibrio angustum S14] Length = 874 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 379/909 (41%), Positives = 537/909 (59%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF++W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 ADRLVVTVYETDDEAFEIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A ++Q +NY+ID+F+ LI+ + +V G + + + RV+ DH+RS ++LI+DG++P Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFED--LSNQSLRVVADHIRSCAYLISDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + L+E+ L+ Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E++ FG+TLDRGL +L+ L +L ++L+G+ FKLYDT+G P D+ D+ RG Sbjct: 361 IEEDNFGRTLDRGLTILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+EEQR RAR +G + + T+F GY G Sbjct: 419 IDEDGFEAAMEEQRQRAR------DAGNFGVDYNDAIKVDAETEFCGYSATDG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ + G V+ +G++ VV TPFYAE+GGQ GD+G Sbjct: 466 ----------------EGEIVALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+ + D QK H V G L L ++D R +S+NHSATHL Sbjct: 510 ILTAEGVLFNVADTQKFGA-AIGHKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL ILG HV+Q GS + DGLRFD ++ + + +L+++E VND I N + T Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHAIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGG H + TG+I L I+S Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG A + +D L A +K +VV +VE + ++L+ Sbjct: 684 ESGIAAGIRRIEAVTGASAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +I V + ++ D+K L+ ++D L+ ++ SG+++L Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +S + K ++ VT+DL+ + A +L L A+ + GG GGGRP MAQ+GG + Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861 Query: 888 AIAGVASFL 896 A+ VA +L Sbjct: 862 ALETVAPWL 870 >gi|327190521|gb|EGE57615.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512] Length = 884 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 487/896 (54%), Positives = 633/896 (70%), Gaps = 38/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS+ E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L A E G+K +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLTGAIEDAVGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG D Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QKK EG+FVH V G +T ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL+ Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + + ++A V ++ ++ VD K+LK + D + I SGI+ L+ Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 G+S++ KAS ++ VT DL+DRF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870 >gi|221214968|ref|ZP_03587936.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1] gi|221165195|gb|EED97673.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1] Length = 874 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + N + +VI DH+R+ +FLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEVGD--LNNNSLKVIADHIRACAFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|302132483|ref|ZP_07258473.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 874 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 389/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P++EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R E+E+F KTL++GL +++ L+ L ++ G++ FKLYDT+G P+D+ DI R L Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++D K F+HH +V G L + + + + R +NHSATH Sbjct: 508 GFLLAGDTRFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|221202097|ref|ZP_03575133.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M] gi|221204772|ref|ZP_03577789.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2] gi|221175629|gb|EEE08059.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2] gi|221178180|gb|EEE10591.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M] Length = 874 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 382/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+E Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + N + +VI DH+R+ +FLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIEAAARVTEVGD--LNNNSLKVIADHIRACAFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IV Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLK 897 A+AGV +++ Sbjct: 861 AALAGVKGWVE 871 >gi|205830261|sp|Q1QMV7|SYA_NITHX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 891 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 459/901 (50%), Positives = 607/901 (67%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R++EIWNLVFMQ+E+ R LPK SIDTG GLER+A VLQ Sbjct: 181 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG G + RVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG A+PEL +A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L ARG G+DI SF Sbjct: 361 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G TE IWF L+EK GAT+F+GY+ Sbjct: 420 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G+ + +G+ +V +QTPFY E+GGQ+GDTG GDG+ Sbjct: 462 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+++TD QKKA +FVH VE+G L M+L L +D R + NHSATHLLH AL Sbjct: 517 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI++ EL+ IED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ + Sbjct: 637 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ +G+RRIEA+TG AR H + K+ A L+ + ++ R+ + EE +KL+ Sbjct: 697 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 756 Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ + +L + + + M+ + ++ K+LK++ D +K++ SG Sbjct: 757 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ LV S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|83312631|ref|YP_422895.1| alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] gi|123541005|sp|Q2W1D9|SYA_MAGMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|82947472|dbj|BAE52336.1| Alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] Length = 878 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 444/906 (49%), Positives = 597/906 (65%), Gaps = 40/906 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK+F + Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDLAIEHAWNLITKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY +D++A WKKI+GL +IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DKSRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG P ++G+R+IEIWNLVFMQFEQ +K+ R LPK SIDTGMGLER+A +LQ Sbjct: 181 EHIFGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRIPLPKPSIDTGMGLERLAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD+DL + LI+AS + + +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDVDLLRALIEASAEASNTDPDGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L+PAL +MG AYPEL++A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLHKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLD+GL LLD ++ +G + L G+VAFKLYDT+G PLD+ QD L A+G G+D F Sbjct: 361 VTLDKGLKLLDDEITRIGSGQKLAGEVAFKLYDTYGFPLDLTQDALKAKG-IGVDTDGFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF L+EK GA++F+GYD Sbjct: 420 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA----- 534 + A+V+ G++VE G +V V+ +QTPFY E+GGQ+GDTG Sbjct: 462 -----AEQAEGKIVALVENGKVVEAVHPGHQVAVIANQTPFYGESGGQMGDTGVITLGTP 516 Query: 535 -IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G + +TD QKK + VH VE G + ++ R +HSATHLL Sbjct: 517 GTGGKATIAVTDTQKKLGDLIVHFGTVEGGPVAVGEDAHFAVESTRRDATRGHHSATHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ILG HV+Q GS + PD LRFD H+K +++ E +++E VN I N V T++ Sbjct: 577 HAALRDILGDHVTQKGSQVGPDRLRFDFAHTKALSAEETRAVEAEVNRRIRLNAEVATKV 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DAI +GA AL G KY + VRVVS+ G S+ LCGGTH + TG+I IV+E Sbjct: 637 MTPDDAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHANRTGDIGGFKIVAE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG + Q++ L A LK + ++ R+ + ++ RKL+ Sbjct: 692 SAVASGVRRIEAVTGPAFLAWAQAQEDLLAKAADTLKAAPADLPARIAGLMDDRRKLERE 751 Query: 774 HAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ + QL + + + + + ++S V +K+LK + D ++K+I SGII LV Sbjct: 752 LAEVRKQLATGGGQGAATKTVNGITYAGKVLSGVPAKDLKGMADEIKKQIGSGIIALVS- 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + KAS+++ VTEDL + +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A A+ Sbjct: 811 DADGKASIVVCVTEDLTSKHSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAVD 870 Query: 891 GVASFL 896 + L Sbjct: 871 RIEQAL 876 >gi|92117171|ref|YP_576900.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14] gi|91800065|gb|ABE62440.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14] Length = 897 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 459/901 (50%), Positives = 607/901 (67%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 7 MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 66 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 67 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 126 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI DNFW M +TGPCGPCSEIF+D G Sbjct: 127 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 186 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R++EIWNLVFMQ+E+ R LPK SIDTG GLER+A VLQ Sbjct: 187 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 246 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG G + RVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 247 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 306 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG A+PEL +A+ LIEETLR E+ RF Sbjct: 307 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 366 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L ARG G+DI SF Sbjct: 367 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDIASFT 425 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G TE IWF L+EK GAT+F+GY+ Sbjct: 426 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 467 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G+ + +G+ +V +QTPFY E+GGQ+GDTG GDG+ Sbjct: 468 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 522 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+++TD QKKA +FVH VE+G L M+L L +D R + NHSATHLLH AL Sbjct: 523 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 582 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI++ EL+ IED ND++ +N V TR+M +DA Sbjct: 583 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 642 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ + Sbjct: 643 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 702 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ +G+RRIEA+TG AR H + K+ A L+ + ++ R+ + EE +KL+ Sbjct: 703 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 762 Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ + +L + + + M+ + ++ K+LK++ D +K++ SG Sbjct: 763 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 822 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ LV S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 823 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 882 Query: 884 K 884 K Sbjct: 883 K 883 >gi|157148231|ref|YP_001455550.1| alanyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895] gi|205830024|sp|A8ANQ1|SYA_CITK8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157085436|gb|ABV15114.1| hypothetical protein CKO_04048 [Citrobacter koseri ATCC BAA-895] Length = 875 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 399/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVV 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ GA++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDGASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAISAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFAFAVSDTQKYG-QAIGHIGTLSTGSLKVGDAVQADVDDARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL ILG+HV+Q GS + LRFD +H++ + +E++++ED VN I +NLPV T Sbjct: 569 LMHAALRQILGTHVAQKGSLVNDKVLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L IV Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATLHAESDRLSDIAQLLKGDSQNLGEKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|271501699|ref|YP_003334725.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586] gi|270345254|gb|ACZ78019.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586] Length = 875 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 385/910 (42%), Positives = 542/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQIVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTSSQWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYASDDEAYDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLFK LI + +V G N + RVI DH+RS +FLIADG++ Sbjct: 243 RISAVLQHVNSNYDIDLFKTLIAEAARVVGTDD--LNNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL + + L+E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIEVMGAAGEELKRQQSLVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL+LLD + L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQLK-GDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E QR RAR + + SL +T F GY+ Sbjct: 420 -VDEAGFERAMEAQRQRAR------DASGFGADYNSLIRVDASTSFCGYERTEQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V AI +QGE V+E +G V+ +TPFY E+GGQ+GD Sbjct: 467 -----------------QSTVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + + D QK + H + +G+LR + +D+ R ++ +NHSATH Sbjct: 510 GELVSAAACFSVADAQKYGQ-AIGHIGSLAQGVLRVNDKVNAVVDHVRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + + LRFD +H + + +++ +ED VN I +NL + T Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLSIDT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A A GA AL G KY++ VRV+S+ G S LCGGTH TG+I L IV Sbjct: 629 DVMALDAARAKGAMALFGEKYDEHVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A L Q + L + +K + +V + E R L+ Sbjct: 684 SESGTAAGIRRIEAVTGENAIVALHEQSDVLHEVTQLVKGDSNTLADKVRSLLERNRGLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S +I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQQAAQESSSLSSKAKEINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT++L +R A +L A + GG GGGRP MAQ+GG + + Sbjct: 804 L-STVADGKVSLIAGVTKELTNRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALP 861 Query: 887 QAIAGVASFL 896 A+ V +++ Sbjct: 862 SALTSVEAWV 871 >gi|205371825|sp|Q89I89|SYA_BRAJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 458/911 (50%), Positives = 615/911 (67%), Gaps = 41/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA ++Q Sbjct: 181 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + RVI DHLRSS+FL++DG+LP+NEGRGY Sbjct: 241 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL +LD + L K ++ +GDVAF LYDT+G PLD+ QD L +RG G+D +F Sbjct: 361 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-IGVDQSAFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++AR G G +E IWF L+EK GAT+F+GY+ Sbjct: 420 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G+ +G+ +V +QTPFYAE+GGQ+GDTG +G+G Sbjct: 462 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++TD QKK +FVH VE G L+ +L L +D+ R + +HSATHL+H AL Sbjct: 517 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS + PD LRFD H KPIT+ EL +ED ND++ +N V TR+M ++ Sbjct: 577 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ + Sbjct: 637 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ +G+RRIEA+TG AR H K+ A+ L+ S +V R+ + EE +KL+ Sbjct: 697 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 756 Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + + +L + ++ DV M+ + ++ K+LKS+ D +K+I SG Sbjct: 757 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ +VG++ + KA +++ VT DL RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 876 Query: 884 KADQAIAGVAS 894 KA +A+A + Sbjct: 877 KAPEALAAIEK 887 >gi|306840334|ref|ZP_07473106.1| alanyl-tRNA synthetase [Brucella sp. BO2] gi|306289733|gb|EFM60922.1| alanyl-tRNA synthetase [Brucella sp. BO2] Length = 885 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V +G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 ITEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|157374457|ref|YP_001473057.1| alanine--tRNA ligase [Shewanella sediminis HAW-EB3] gi|205830208|sp|A8FSV6|SYA_SHESH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157316831|gb|ABV35929.1| Alanine--tRNA ligase [Shewanella sediminis HAW-EB3] Length = 874 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 377/909 (41%), Positives = 546/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWNFLTQELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EA+ +W K G+ A+ +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAYDIWTKEIGVPAENLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWN+VFMQ+ +Q+ E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ + + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILSVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L+P L MG A L+ + ++E++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGASDSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LDG L+ L ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDGALNALK-GDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G E + + T F GY L Sbjct: 420 EAGFEVAMAEQRSRAQAA------GQFETDYNDSLKIDELTHFSGYTELTAP-------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + AI GE V +G + +V D TPFY E+GGQ GD G Sbjct: 466 ---------------GKITAIYMAGESVNSLSAGDEAVIVLDSTPFYGESGGQCGDRGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GI + D QK + + + G L SL +D + R + +NHS THLLH Sbjct: 511 SAKGIEFDVKDTQKYGQAVGHQ-GALTSGTLSVGDSLEANVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + + LRFD +H + + ELK++ED VN I +N + +M Sbjct: 570 AALRQLLGTHVTQKGSLVDSERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSAEVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DMDQAKEKGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ GQ +L A+ LK +VV +++ + + L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAGQKAELDQAAALLKADSASVVSKLKAQLDRTKLLEKEL 744 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K +L ++ VN + + V++ L+ + D L++K+ SGI++L G Sbjct: 745 SQLKDKLAAATSADLAGEAQQVNGVNVLVKKLDGVEAGALRGLQDELKQKLGSGIVVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ + K ++++ VT+DL + A +L A + GG GGGRP MAQ+GG D A+ Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVASIASQV-GGKGGGRPDMAQAGGSQPENLDSAL 862 Query: 890 AGVASFLKK 898 V +L + Sbjct: 863 EQVIPWLTE 871 >gi|209549551|ref|YP_002281468.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535307|gb|ACI55242.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 884 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 492/896 (54%), Positives = 631/896 (70%), Gaps = 38/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A E+ G K +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLIGAIEETMGAK--AKGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELVRAEALISETLKLEEGRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + LGK ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 359 KTLERGLSLLSDATTDLGKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV++G EE +G KV++V +QTPFY E+GGQ+GDTG D Sbjct: 460 -----TETAEGVVQAIVREGAAAEEVKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R++I+D QKK EG+FVH +V G + ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 RIEISDTQKKGEGLFVHSGVVVEGAFKAGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN V TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSAVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ G +S LCGGTHVS+TG+I L+ ++ ES Sbjct: 635 IEEGAMALFGEKYGDEVRVVSMGTGVHGAKSNKPYSVELCGGTHVSATGQIGLIRVLGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL+ Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDERRKLEKEL 754 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + + ++A V F+ IS VD K+LK + D + I SG++ L+ Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKFLGKSISGVDPKDLKGLADDGKTSIGSGVVTLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 G+S + KAS ++ VT DL+DRF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 815 GVSDDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870 >gi|87122506|ref|ZP_01078386.1| alanyl-tRNA synthetase [Marinomonas sp. MED121] gi|86162299|gb|EAQ63584.1| alanyl-tRNA synthetase [Marinomonas sp. MED121] Length = 871 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 379/908 (41%), Positives = 542/908 (59%), Gaps = 54/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R +FL++F+ H+++ SSSLIP NDPTL+FTN+GMV FK++F G + Y Sbjct: 1 MKSSELRQSFLKYFESKQHQVVDSSSLIPGNDPTLLFTNAGMVQFKDVFLGMDDRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+ L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTQVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L +TVY +D+EA+ +W K G+ D+I+RI N DNFW M +TGPCGPC+E Sbjct: 121 TEKLLVTVYADDDEAWDIWAKKIGVPEDRIVRIGDNKGARYASDNFWQMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PGS E+G+R+IEIWN+VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRDANGVMNPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+ID+F++LI+A+ +V G + RVI DH+RS SF+I DGI+P+ Sbjct: 241 AAILQGVHSNYEIDIFQNLIKAAAKVVGTDD--LEAQSLRVIADHIRSCSFMIVDGIVPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+ L TEMG AYP+L + I+ L Sbjct: 299 NEGRGYVLRRIVRRAIRHGHKLGQKQAFFNTLVADLVTEMGDAYPDLAKLADRIQAILLK 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTL++G+ +LD + LG +I++G+ FKLYDT+G P D+ D+ R I Sbjct: 359 EEEQFAKTLEQGMRILDDAIGELGDSKIISGETVFKLYDTYGFPADLTNDVARER-HLEI 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR+RAR+ S + + G T+F GY L Sbjct: 418 DEKGFERAMEEQRNRARSASQFTMDMSGSI-------EAGDTEFTGYSHLVD-------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++A++ GE VE +GQ V+ QTPFY E+GGQ+GD G Sbjct: 463 ---------------ECEIEALILDGEKVESLTAGQSGIVILKQTPFYGESGGQVGDQGW 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+G K +HH + G + L T+D R +NHSATHL+ Sbjct: 508 LRGNGA--FSVTNTTKQGKTHLHHGELREGSITLGDKLTATVDASLRAATGLNHSATHLM 565 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G HV Q GS + LRFD +H + +T+AE++ +ED VN+ I N V+T Sbjct: 566 HEALRRVVGDHVHQKGSLCDAERLRFDFSHFEGVTAAEIEQVEDMVNEQIRLNHEVLTEE 625 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+ +VRV+++ +S LCGGTHV TG+I + IV+E Sbjct: 626 MDIESAKERGAMALFGEKYDSQVRVLTMGS----EYSIELCGGTHVKRTGDIGVFKIVAE 681 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEAITG+ A + ++ ++ +A+ +K ++ N++ +V + ++ R LQ Sbjct: 682 SGIAAGVRRIEAITGKVAIDYNRATEKSVQQVAALVKGNKENMIEKVTALSDQNRALQKE 741 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + S I + + D K L+ ++D L+ K++S +I+L Sbjct: 742 LDVIKAKLAAQAGSDLASQAVDIDGGKLLVAQVDVEDPKALRDMLDELKSKLESAVILLA 801 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT++L + A DL ++ A ++ G GGGRP MAQ+GG N +A Sbjct: 802 SV-NDSKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGRGGGRPDMAQAGGNNPAGLPEA 859 Query: 889 IAGVASFL 896 +A V ++ Sbjct: 860 LASVQPWV 867 >gi|190892008|ref|YP_001978550.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652] gi|190697287|gb|ACE91372.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652] Length = 884 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 487/896 (54%), Positives = 634/896 (70%), Gaps = 38/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS+ E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L A E G+K +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLTGAIEDAAGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG D Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QKK EG+FVH V G +T ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR++L QD+++K+LA+ LKV V+ RVE + +E RKL+ Sbjct: 695 AVGAGVRRLEAVTGESARAYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + + ++A V ++ ++ VD K+LK + D + I SGI+ L+ Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 G+S++ KAS ++ VT DL+DRF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870 >gi|27380861|ref|NP_772390.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] gi|27354027|dbj|BAC51015.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] Length = 894 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 458/911 (50%), Positives = 615/911 (67%), Gaps = 41/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 3 MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L Sbjct: 63 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 123 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 182 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA ++Q Sbjct: 183 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + RVI DHLRSS+FL++DG+LP+NEGRGY Sbjct: 243 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 303 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL +LD + L K ++ +GDVAF LYDT+G PLD+ QD L +RG G+D +F Sbjct: 363 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-IGVDQSAFT 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++AR G G +E IWF L+EK GAT+F+GY+ Sbjct: 422 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G+ +G+ +V +QTPFYAE+GGQ+GDTG +G+G Sbjct: 464 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 518 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++TD QKK +FVH VE G L+ +L L +D+ R + +HSATHL+H AL Sbjct: 519 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 578 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS + PD LRFD H KPIT+ EL +ED ND++ +N V TR+M ++ Sbjct: 579 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 638 Query: 659 AIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ + Sbjct: 639 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 698 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ +G+RRIEA+TG AR H K+ A+ L+ S +V R+ + EE +KL+ Sbjct: 699 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 758 Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + + +L + ++ DV M+ + ++ K+LKS+ D +K+I SG Sbjct: 759 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 818 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ +VG++ + KA +++ VT DL RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G Sbjct: 819 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 878 Query: 884 KADQAIAGVAS 894 KA +A+A + Sbjct: 879 KAPEALAAIEK 889 >gi|324111325|gb|EGC05307.1| alanyl-tRNA synthetase [Escherichia fergusonii B253] Length = 876 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +S V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LSGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|325579107|ref|ZP_08149063.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159342|gb|EGC71476.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] Length = 874 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 545/911 (59%), Gaps = 56/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI + +V G + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A E+ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + D +L+G+VAFKLYDT+G PLD+ D+ R Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERD- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + +E QR RA++ S + ++ G T+F GY Sbjct: 417 IAIDEAGFEREMEAQRLRAQSASQFGM------DYNNVIRVEGETKFEGYTESESL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ VE +GQ V+ + TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFHDGKSVESITAGQSAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G GI+ + D QK +F H +E+G L+ ++ +D R Q S+NHSAT Sbjct: 508 SGYLTSQGIQFNVKDTQKYG-QVFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV Q GS ++ LRFD H + IT A+L IE VN + +N V Sbjct: 567 HLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M+ E A A GA AL G KY D VRV+++ G S LCGG H TG+I L I Sbjct: 627 TDVMDIEAAKAKGAMALFGEKYADVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+E+++ AG+RRIEA+TG+ A + L Q L A K +V +++++ ++ +K Sbjct: 682 VAETAVAAGVRRIEAVTGENAMNWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKKA 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI DV+ + H + +++K L+ ++D L+ ++ SG+I Sbjct: 742 EKELQGLKEKAAMQAGSDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSGVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + I + K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 VFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859 Query: 886 DQAIAGVASFL 896 + A+ ++L Sbjct: 860 NLALTVAQNWL 870 >gi|33602167|ref|NP_889727.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50] gi|41018190|sp|Q7WHL6|SYA_BORBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33576605|emb|CAE33683.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50] Length = 874 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 398/911 (43%), Positives = 547/911 (60%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y+ Sbjct: 1 MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI A+ + TG+K +N + +VI DH+R+ +FLI DGI+P+ Sbjct: 241 AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL Q + + LR Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TL+ G+ +LDG L+ + K + L+G F LYDT+G P+D+ DI RG + Sbjct: 359 EEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERG-VEV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A++ QR +ARA + L + T+F GY+ L S Sbjct: 418 DMAGFEAAMQRQREQARAAGKFKMAEG-------LSYEGAETRFEGYESLELSGV----- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ +G VE+ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 466 -----------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D K G+F HH +E G L+ +L+ +D R + NHSATHL+ Sbjct: 509 LEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N ++ Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L +VSE Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEAITG A + + Q+ L+ A L+ + R+ ++ E+ + L+ Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIVQVQEQLKALEKE 742 Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 743 LEQARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + K S++ VT DL R A DL A +GG G GGRP MA GG + Sbjct: 803 AAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKG-GGRPDMAMGGGTDLAALPA 861 Query: 888 AIAGVASFLKK 898 A+A V ++ + Sbjct: 862 AVASVQKWVDE 872 >gi|331654174|ref|ZP_08355174.1| alanine--tRNA ligase [Escherichia coli M718] gi|331047556|gb|EGI19633.1| alanine--tRNA ligase [Escherichia coli M718] Length = 876 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVTQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|251788614|ref|YP_003003335.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591] gi|247537235|gb|ACT05856.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591] Length = 875 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 543/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSSEWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF LI + +V G N + RVI DH+RS +FLIADG++ Sbjct: 243 RISAVLQHVNSNYDIDLFSTLIAEAARVVGTDD--LNNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + L+E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGPLVDVMGSAAEELKRQQSLVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL+LLD + L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQLK-GDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E QR RAR + + SL +T F GY+ Sbjct: 420 -VDEAGFERAMEAQRQRAR------DASGFGADYNSLIRVDESTTFCGYERTEQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V AI +QGE V+E +G V+ +TPFY E+GGQ+GD Sbjct: 467 -----------------QSTVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R + D QK + H + +G+LR + +D+ R ++ +NHSATH Sbjct: 510 GTLVSAAARFSVVDAQKYGQ-AIGHVGSLVQGVLRVNDKVDAAVDHVRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + + LRFD +H + + +++ +ED VN I +NLPV T Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVDT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A A GA AL G KY+++VRV+S+ G S LCGGTH TG+I L IV Sbjct: 629 DVMALDAARAKGAMALFGEKYDEQVRVLSM-----GDFSIELCGGTHARRTGDIGLFQIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A L Q + L + +K N+ +V + E R L+ Sbjct: 684 SESGTAAGVRRIEAVTGENAIVALHQQSDVLHEVTQLVKGDSNNLADKVRSLLERTRGLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQQAAQESSSLSGKAKDINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT++L DR A +L A + GG GGGRP MAQ+GG + Sbjct: 804 L-STVADGKVSLIAGVTKELTDRVKAGELVGFVANQV-GGKGGGRPDMAQAGGSDVGALP 861 Query: 887 QAIAGVASFL 896 A+ + +++ Sbjct: 862 SALTSIEAWV 871 >gi|323978695|gb|EGB73777.1| alanyl-tRNA synthetase [Escherichia coli TW10509] Length = 876 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGVNFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|306844100|ref|ZP_07476694.1| alanyl-tRNA synthetase [Brucella sp. BO1] gi|306275543|gb|EFM57275.1| alanyl-tRNA synthetase [Brucella sp. BO1] Length = 885 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 476/893 (53%), Positives = 624/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSEDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRNGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V +G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|253772448|ref|YP_003035279.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162628|ref|YP_003045736.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606] gi|242378254|emb|CAQ33029.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)] gi|253323492|gb|ACT28094.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974529|gb|ACT40200.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606] gi|253978696|gb|ACT44366.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)] Length = 876 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|170682603|ref|YP_001744844.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5] gi|205830086|sp|B1LQ15|SYA_ECOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170520321|gb|ACB18499.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5] Length = 876 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLATGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|256113755|ref|ZP_05454559.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|265995116|ref|ZP_06107673.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|262766229|gb|EEZ12018.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] Length = 885 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 474/893 (53%), Positives = 622/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+A E+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRALEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|17987072|ref|NP_539706.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|23502078|ref|NP_698205.1| alanyl-tRNA synthetase [Brucella suis 1330] gi|62290112|ref|YP_221905.1| alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82700035|ref|YP_414609.1| alanyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308] gi|161619156|ref|YP_001593043.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365] gi|163843466|ref|YP_001627870.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445] gi|189024350|ref|YP_001935118.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19] gi|225627671|ref|ZP_03785708.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo] gi|237815619|ref|ZP_04594616.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|254689421|ref|ZP_05152675.1| alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870] gi|254693906|ref|ZP_05155734.1| alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya] gi|254697556|ref|ZP_05159384.1| alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59] gi|254701941|ref|ZP_05163769.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|254704486|ref|ZP_05166314.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|254706618|ref|ZP_05168446.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|254710272|ref|ZP_05172083.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|254730450|ref|ZP_05189028.1| alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292] gi|256031766|ref|ZP_05445380.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|256044851|ref|ZP_05447755.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|256061281|ref|ZP_05451431.1| alanyl-tRNA synthetase [Brucella neotomae 5K33] gi|256159936|ref|ZP_05457654.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1] gi|256255167|ref|ZP_05460703.1| alanyl-tRNA synthetase [Brucella ceti B1/94] gi|256257667|ref|ZP_05463203.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|256369625|ref|YP_003107135.1| alanyl-tRNA synthetase [Brucella microti CCM 4915] gi|260168900|ref|ZP_05755711.1| alanyl-tRNA synthetase [Brucella sp. F5/99] gi|260546661|ref|ZP_05822400.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260565546|ref|ZP_05836030.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|260566269|ref|ZP_05836739.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|260754944|ref|ZP_05867292.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870] gi|260758160|ref|ZP_05870508.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260761986|ref|ZP_05874329.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260883954|ref|ZP_05895568.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|261214196|ref|ZP_05928477.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|261222364|ref|ZP_05936645.1| alanyl-tRNA synthetase [Brucella ceti B1/94] gi|261314078|ref|ZP_05953275.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|261317834|ref|ZP_05957031.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261325289|ref|ZP_05964486.1| alanyl-tRNA synthetase [Brucella neotomae 5K33] gi|261752508|ref|ZP_05996217.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261755167|ref|ZP_05998876.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|261758391|ref|ZP_06002100.1| alanyl-tRNA synthetase [Brucella sp. F5/99] gi|265988865|ref|ZP_06101422.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|265991279|ref|ZP_06103836.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|265998329|ref|ZP_06110886.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1] gi|297248508|ref|ZP_06932226.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] gi|54039648|sp|P67009|SYA_BRUSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|54042023|sp|P67008|SYA_BRUME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|75496699|sp|Q57CU0|SYA_BRUAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123547531|sp|Q2YRU8|SYA_BRUA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205829996|sp|A9M5L7|SYA_BRUC2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205829998|sp|B0CGZ9|SYA_BRUSI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|17982730|gb|AAL51970.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|23348036|gb|AAN30120.1| alanyl-tRNA synthetase [Brucella suis 1330] gi|62196244|gb|AAX74544.1| AlaS, alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82616136|emb|CAJ11179.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus 2308] gi|161335967|gb|ABX62272.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365] gi|163674189|gb|ABY38300.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445] gi|189019922|gb|ACD72644.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19] gi|225617676|gb|EEH14721.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo] gi|237788917|gb|EEP63128.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|255999787|gb|ACU48186.1| alanyl-tRNA synthetase [Brucella microti CCM 4915] gi|260095711|gb|EEW79588.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260151614|gb|EEW86708.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|260155787|gb|EEW90867.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|260668478|gb|EEX55418.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260672418|gb|EEX59239.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260675052|gb|EEX61873.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870] gi|260873482|gb|EEX80551.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|260915803|gb|EEX82664.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|260920948|gb|EEX87601.1| alanyl-tRNA synthetase [Brucella ceti B1/94] gi|261297057|gb|EEY00554.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261301269|gb|EEY04766.1| alanyl-tRNA synthetase [Brucella neotomae 5K33] gi|261303104|gb|EEY06601.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|261738375|gb|EEY26371.1| alanyl-tRNA synthetase [Brucella sp. F5/99] gi|261742261|gb|EEY30187.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261744920|gb|EEY32846.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|262552797|gb|EEZ08787.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1] gi|263002063|gb|EEZ14638.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|264661062|gb|EEZ31323.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|297175677|gb|EFH35024.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] Length = 885 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|306812426|ref|ZP_07446624.1| alanyl-tRNA synthetase [Escherichia coli NC101] gi|305854464|gb|EFM54902.1| alanyl-tRNA synthetase [Escherichia coli NC101] gi|320194836|gb|EFW69465.1| Alanyl-tRNA synthetase [Escherichia coli WV_060327] Length = 876 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|331648414|ref|ZP_08349502.1| alanine--tRNA ligase [Escherichia coli M605] gi|281179700|dbj|BAI56030.1| alanyl-tRNA synthetase [Escherichia coli SE15] gi|331042161|gb|EGI14303.1| alanine--tRNA ligase [Escherichia coli M605] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|330908728|gb|EGH37242.1| alanyl-tRNA synthetase [Escherichia coli AA86] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|251793474|ref|YP_003008203.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] gi|247534870|gb|ACS98116.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] Length = 874 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 385/912 (42%), Positives = 549/912 (60%), Gaps = 56/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ DEEA+K+W G+ A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDEEAYKIWHDEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+FK LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKD--LNNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG TE L+P L M A ++ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEDVKKHQATVEKF 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+++ D +L+G VAFKLYDT+G PLD+ D+ RG Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANVK-DNVLSGKVAFKLYDTYGFPLDLTADVCRERG- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + + QR RA++ S + ++ G T+F GY Sbjct: 417 IAIDEAGFEREMASQRVRAQSASQFGM------DYNNVIRVDGTTRFEGYTESESL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ VE +GQ+ V+ + TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVTALFHDGKAVESITAGQRAVVILENTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G+G + D QK +F H + +G L S+ +D R+Q+S+NHSAT Sbjct: 508 IGRLEGNGFIFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDDVRRQQISLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ LRFD H + I+ +L +E VN + N PV Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAHHEAISKEQLAEVERIVNQQVRANNPVQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T M + A A GA AL G KY+++VRV+++ G S LCGG H TG+I L I Sbjct: 627 TEAMALDAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+E+++ AGIRRIEAITG+ A L Q L A LK ++ ++ + ++++K+ Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSADLLKSDVNSITDKISLLQDKFKKV 741 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S KI V+ + + +++K L+S++D+L+ ++ S +I Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKIHGVSVIVQQLDGIEAKSLRSMVDSLKNQLGS-VI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ++ ++K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 VVFASVLDEKVNLIVGVTGDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPQNI 859 Query: 886 DQAIAGVASFLK 897 +A++ + +LK Sbjct: 860 GKALSVCSDWLK 871 >gi|292491239|ref|YP_003526678.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4] gi|291579834|gb|ADE14291.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4] Length = 873 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 389/906 (42%), Positives = 550/906 (60%), Gaps = 50/906 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + +R FL++F+ GHE++PSS L+P NDPTL+FTN+GMV FK++F G+E Y+ Sbjct: 1 MKSSAELRKIFLDYFRHQGHEIVPSSPLVPANDPTLLFTNAGMVQFKDVFLGRETRAYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W LLT+ L Sbjct: 61 AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYGWALLTEVLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL+ITV+++D+EA +W K G+S ++ R DNFWSM +TGPCGP SEIF+D G Sbjct: 121 PPERLWITVFEDDDEAANIWLKEIGVSPERFARCGAEDNFWSMGDTGPCGPSSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E EG+RY EIWNLVFMQ+++ + LPK S+DTGMGLER+A V+Q Sbjct: 181 SGIAGGPPGSPEQEGDRYTEIWNLVFMQYDRNKEGHLSPLPKPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF++LI A ++G++ + RVI DH+RS +FLI DG+ P+NEGRGY Sbjct: 241 VHDNYDIDLFRNLITAITALSGIQ--NQEPTSLRVIADHIRSCAFLIVDGVQPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG +P L+ L EMG AYPEL QA+ +E L+ E+ERF Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYQLVQPLAVEMGEAYPELPQAQSRVERMLKLEEERFN 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL +L+ + +L +++ G+ F+LYDT G P+D+ DI RGL +D+ F Sbjct: 359 ETLDQGLKILEQDIENLS-GQVIPGETVFRLYDTFGFPVDLTADIARERGLT-LDMRGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +QR RARA S + + T+FIGY+ LRG Sbjct: 417 HAMAKQRERARAASRFKIEYGPD------LQLDLETEFIGYEHLRG-------------- 456 Query: 480 PPIDLTNGVSSIVKAIVQ---QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V A+ + E VE+ +G+K VV D+TPFYAEAGGQ+GD G Sbjct: 457 ---------EGQVTALFRVAETTEAVEQLSAGEKGIVVLDRTPFYAEAGGQVGDQGTLRA 507 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G +TD QK+ + H V G LR + ++ +R +NHSATHLLH + Sbjct: 508 PGGLFNVTDTQKQGA-AYAHLGEVRLGELRVGDLIQAEVERAHRAPTRLNHSATHLLHAS 566 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +T D LRFD +H + + +L+ IE VN I +LPV T+IM Sbjct: 567 LRQVLGEHVAQKGSLVTADRLRFDFSHFEALEPEQLRQIERLVNAQIRADLPVETQIMPL 626 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+ +G AL G KY ++VRV+ + G S LCGGTHV TG I L I++E+ I Sbjct: 627 QEALDAGVVALFGEKYGEQVRVLRM-----GNFSVELCGGTHVDRTGNIGLFKIINETGI 681 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA+TG+ A + + +L+++A LK S+ +V+ ++E + ++ R+ + Sbjct: 682 AAGIRRIEAVTGEAALRWVEENEARLEAVAGLLKASRESVIDKLELLQQQARQQEKEIQS 741 Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L +I V ++ I VD K L++ D L+ K+ + I+L G Sbjct: 742 LKARLASAGGSDLSAQAQEIQGVKVLAARIDGVDIKTLRNTADQLKSKLATAAIVL-GTV 800 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K ++ VT++ +++ A DL A+ + GG GGGRP MAQ+GG + +K D A+ Sbjct: 801 VEGKVVLIAGVTKNAINQIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGKDPDKLDAALKS 859 Query: 892 VASFLK 897 V +++ Sbjct: 860 VPEWVE 865 >gi|323935749|gb|EGB32063.1| alanyl-tRNA synthetase [Escherichia coli E1520] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYSSDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|33592894|ref|NP_880538.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I] gi|41018186|sp|Q7VXE1|SYA_BORPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33572542|emb|CAE42122.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I] Length = 874 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/911 (43%), Positives = 545/911 (59%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y+ Sbjct: 1 MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI A+ + TG+K +N + +VI DH+R+ +FLI DGI+P+ Sbjct: 241 AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T+ L+P L EMG AYPEL Q + + LR Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKSFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TL+ G+ +LDG L+ + K + L+G F LYDT+G P+D+ DI R + Sbjct: 359 EEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRER-EVEV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A++ QR +ARA + L + T+F GY+ L S Sbjct: 418 DMAGFEAAMQRQREQARAAGKFKMAEG-------LSYEGAETRFEGYENLELSGV----- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ +G VE+ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 466 -----------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D K G+F HH +E G L+ +L+ +D R + NHSATHL+ Sbjct: 509 LEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N ++ Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L +VSE Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEAITG A + + Q+ L+ A L+ + R+ ++ E+ + L+ Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIAQVQEQLKALEKE 742 Query: 774 HAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 743 LEQARTKLAASAGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + K S++ VT DL R A DL A +GG G GGRP MA GG + Sbjct: 803 AAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKG-GGRPDMAMGGGTDLAALPA 861 Query: 888 AIAGVASFLKK 898 A+A V ++ + Sbjct: 862 AVASVQKWVDE 872 >gi|293415946|ref|ZP_06658586.1| alanyl-tRNA synthetase [Escherichia coli B185] gi|331684309|ref|ZP_08384901.1| alanine--tRNA ligase [Escherichia coli H299] gi|291432135|gb|EFF05117.1| alanyl-tRNA synthetase [Escherichia coli B185] gi|331077924|gb|EGI49130.1| alanine--tRNA ligase [Escherichia coli H299] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|157162143|ref|YP_001459461.1| alanyl-tRNA synthetase [Escherichia coli HS] gi|218690819|ref|YP_002399031.1| alanyl-tRNA synthetase [Escherichia coli ED1a] gi|227888232|ref|ZP_04006037.1| alanyl-tRNA synthetase [Escherichia coli 83972] gi|331658802|ref|ZP_08359744.1| alanine--tRNA ligase [Escherichia coli TA206] gi|205830083|sp|A8A3H4|SYA_ECOHS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157067823|gb|ABV07078.1| alanyl-tRNA synthetase [Escherichia coli HS] gi|218428383|emb|CAR09311.2| alanyl-tRNA synthetase [Escherichia coli ED1a] gi|227834501|gb|EEJ44967.1| alanyl-tRNA synthetase [Escherichia coli 83972] gi|307554671|gb|ADN47446.1| alanyl-tRNA synthetase [Escherichia coli ABU 83972] gi|331053384|gb|EGI25413.1| alanine--tRNA ligase [Escherichia coli TA206] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|294852536|ref|ZP_06793209.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026] gi|294821125|gb|EFG38124.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026] Length = 885 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGLAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVANQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|110642817|ref|YP_670547.1| alanyl-tRNA synthetase [Escherichia coli 536] gi|123147797|sp|Q0TEI3|SYA_ECOL5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110344409|gb|ABG70646.1| alanyl-tRNA synthetase [Escherichia coli 536] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + E+L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|16130604|ref|NP_417177.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|89109484|ref|AP_003264.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110] gi|170082274|ref|YP_001731594.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|188492036|ref|ZP_02999306.1| alanyl-tRNA synthetase [Escherichia coli 53638] gi|194439000|ref|ZP_03071084.1| alanyl-tRNA synthetase [Escherichia coli 101-1] gi|238901834|ref|YP_002927630.1| alanyl-tRNA synthetase [Escherichia coli BW2952] gi|254037736|ref|ZP_04871794.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43] gi|256024797|ref|ZP_05438662.1| alanyl-tRNA synthetase [Escherichia sp. 4_1_40B] gi|307139383|ref|ZP_07498739.1| alanyl-tRNA synthetase [Escherichia coli H736] gi|331643380|ref|ZP_08344511.1| alanine--tRNA ligase [Escherichia coli H736] gi|2507425|sp|P00957|SYA_ECOLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830082|sp|B1XCM5|SYA_ECODH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1789048|gb|AAC75739.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|1800083|dbj|BAA16559.1| alanyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110] gi|169890109|gb|ACB03816.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|188487235|gb|EDU62338.1| alanyl-tRNA synthetase [Escherichia coli 53638] gi|194422121|gb|EDX38124.1| alanyl-tRNA synthetase [Escherichia coli 101-1] gi|226839360|gb|EEH71381.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43] gi|238859951|gb|ACR61949.1| alanyl-tRNA synthetase [Escherichia coli BW2952] gi|260448253|gb|ACX38675.1| alanyl-tRNA synthetase [Escherichia coli DH1] gi|309703056|emb|CBJ02388.1| alanyl-tRNA synthetase [Escherichia coli ETEC H10407] gi|315137304|dbj|BAJ44463.1| alanyl-tRNA synthetase [Escherichia coli DH1] gi|323941473|gb|EGB37656.1| alanyl-tRNA synthetase [Escherichia coli E482] gi|323960644|gb|EGB56270.1| alanyl-tRNA synthetase [Escherichia coli H489] gi|323971514|gb|EGB66748.1| alanyl-tRNA synthetase [Escherichia coli TA007] gi|331036851|gb|EGI09075.1| alanine--tRNA ligase [Escherichia coli H736] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|218547790|ref|YP_002381581.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] gi|218355331|emb|CAQ87938.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRKVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|323966841|gb|EGB62270.1| alanyl-tRNA synthetase [Escherichia coli M863] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGVNFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|218706191|ref|YP_002413710.1| alanyl-tRNA synthetase [Escherichia coli UMN026] gi|293406188|ref|ZP_06650114.1| alaS [Escherichia coli FVEC1412] gi|298381926|ref|ZP_06991523.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302] gi|331664248|ref|ZP_08365154.1| alanine--tRNA ligase [Escherichia coli TA143] gi|218433288|emb|CAR14188.1| alanyl-tRNA synthetase [Escherichia coli UMN026] gi|284922633|emb|CBG35721.1| alanyl-tRNA synthetase [Escherichia coli 042] gi|291426194|gb|EFE99226.1| alaS [Escherichia coli FVEC1412] gi|298277066|gb|EFI18582.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302] gi|331058179|gb|EGI30160.1| alanine--tRNA ligase [Escherichia coli TA143] Length = 876 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGTNFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|145300678|ref|YP_001143519.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] gi|205829973|sp|A4SS99|SYA_AERS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|142853450|gb|ABO91771.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] Length = 874 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 373/910 (40%), Positives = 548/910 (60%), Gaps = 53/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IR FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 MSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RL +TVY+ D+EAF +W G+ ++I+RI N DNFW M++TGPCGPC+E Sbjct: 123 KERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKGAAFASDNFWQMSDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS E+G+R+IEIWN+VFMQF +Q LP+ S+DTGMGLER+ Sbjct: 183 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+ + ++ G + + RVI DH+RS +FLIADG++P+ Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTTD--LSNQSLRVIADHIRSCAFLIADGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + R LG T+ L L +M ELI L++ LR Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TLDRGL+LL+ VL++LG +++ G+V FKLYDT+G P D+ D++ R GI Sbjct: 361 EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVRER-EIGI 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN +E+QR+RA+ S + + + + T F GY L Sbjct: 420 DEEGFNAEMEKQRARAKEASSFGVN------YNEVLKLDFETPFTGYKQLSQKTS----- 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V I + G V ++G++ VV +TPFYAE+GGQ+GD G Sbjct: 469 ------------------VVGIYKDGVEVNGLIAGEEAVVVLAETPFYAESGGQVGDCGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D +TD QK + I +E G L + +D + R+ +++NHS THLL Sbjct: 511 LKVDDGIFAVTDTQKAGKAIIHK-GYLELGTLEKGALVEAVVDGERRQAVALNHSVTHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL LG HV+Q GS + + +RFD +H + +T A ++ +E+ VN I N + T++ Sbjct: 570 HAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A ++GA AL G KY D VRVV + G +S+ LCGGTH TG+I I++E Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA+TG+ A + E+++ A+ +K Q ++ +V +I ++ + ++ Sbjct: 685 SGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALVKGDQFSIADKVRQILDKSKMMERE 744 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K +L + S +I + + D K L+ ++D L+ +++SG+++L Sbjct: 745 LEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGVVLLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S + K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG A Sbjct: 805 -TSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862 Query: 889 IAGVASFLKK 898 + V S+L++ Sbjct: 863 LQSVHSWLEE 872 >gi|215488016|ref|YP_002330447.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] gi|215266088|emb|CAS10508.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] Length = 876 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|91212055|ref|YP_542041.1| alanyl-tRNA synthetase [Escherichia coli UTI89] gi|117624928|ref|YP_853916.1| alanyl-tRNA synthetase [Escherichia coli APEC O1] gi|218559685|ref|YP_002392598.1| alanyl-tRNA synthetase [Escherichia coli S88] gi|237706683|ref|ZP_04537164.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|122422735|sp|Q1R804|SYA_ECOUT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830084|sp|A1AEN7|SYA_ECOK1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91073629|gb|ABE08510.1| alanyl-tRNA synthetase [Escherichia coli UTI89] gi|115514052|gb|ABJ02127.1| alanyl-tRNA synthetase [Escherichia coli APEC O1] gi|218366454|emb|CAR04206.1| alanyl-tRNA synthetase [Escherichia coli S88] gi|226899723|gb|EEH85982.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|294489971|gb|ADE88727.1| penicillin-binding protein 7 [Escherichia coli IHE3034] gi|307625735|gb|ADN70039.1| alanyl-tRNA synthetase [Escherichia coli UM146] gi|323951085|gb|EGB46961.1| alanyl-tRNA synthetase [Escherichia coli H252] gi|323957093|gb|EGB52818.1| alanyl-tRNA synthetase [Escherichia coli H263] Length = 876 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNESRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|330432525|gb|AEC17584.1| alanyl-tRNA synthetase [Gallibacterium anatis UMN179] Length = 874 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 383/902 (42%), Positives = 545/902 (60%), Gaps = 56/902 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSYLDFFHSKGHQIVASSSLVPENDPTLLFTNAGMNQFKDVFLGIDKRSYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHFAWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ DEEA+ +W + G+ AD+I+RI N DNFW M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDEEAYNIWHQQIGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQ+ + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQYNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+FK LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFKVLIAKVAEITGEKDLANK--SLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRRI+RRA+ + LLG + L+P L M A L + ++ IE+ Sbjct: 299 YPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPTLIEVMAQAGEILKEKQVHIEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ L +L+G+VAFKLYDT+G PLD+ D+ R Sbjct: 359 LRLEEEQFARTLERGLALLDAELASLK-GNVLSGEVAFKLYDTYGFPLDLTADVCRERD- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID FN+ +E QR RA+A S + +L G T F GY Sbjct: 417 IAIDEDGFNREMEAQRERAQAASQFGM------DYNNLIRVDGTTAFEGYHAAESL---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V AI G+ V + +GQ ++ + TPFYAE+GGQ+GD Sbjct: 467 -------------------AKVSAIFVDGKEVNQVQAGQSAVIILENTPFYAESGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + D QK +F H +++G ++ +L +D + R+ S+NHSAT Sbjct: 508 SGILESADALFTVNDTQKYG-QVFGHIGELKKGEIKVGQTLHAVVDAERRQATSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG+HV+Q GS ++ LRFD + + I+ A++ IE VN I N V Sbjct: 567 HLLHAALRQVLGTHVAQKGSLVSDKLLRFDFSQPEAISKAQIAEIERIVNSQIRANHVVS 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A A GA AL G KY DRVRV+++ G S LCGG HV TG+I L I Sbjct: 627 VEEMDIEAAKAKGAMALFGEKYGDRVRVITM-----GDFSIELCGGIHVKRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSES+I AG RRIEA+TG+ A + ++ Q L A LK ++V +++++ + +KL Sbjct: 682 VSESAIAAGTRRIEAVTGEEAFNVVLAQQSLLTQSAELLKSDLPSIVEKIQQLQDRAKKL 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K + V+ +S I V + ++ VD K L+ ++D L+ ++ + +I Sbjct: 742 EKELQQLKEKSAVQAVSDLAQKAQTINGVKVVIESVTGVDPKSLRIMVDDLKNQLGTAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++++K ++++ VT+DL + A +L A+++ GG GGGRP MA +GG K Sbjct: 802 V-FGATQDEKVNLIVGVTQDLTGKVKAGELVNQLAQLV-GGKGGGRPDMAMAGGNEPAKL 859 Query: 886 DQ 887 ++ Sbjct: 860 NE 861 >gi|331674208|ref|ZP_08374968.1| alanine--tRNA ligase [Escherichia coli TA280] gi|222034390|emb|CAP77132.1| alanyl-tRNA synthetase [Escherichia coli LF82] gi|312947225|gb|ADR28052.1| alanyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C] gi|331068302|gb|EGI39697.1| alanine--tRNA ligase [Escherichia coli TA280] Length = 876 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|148560301|ref|YP_001259121.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840] gi|205829997|sp|A5VQX4|SYA_BRUO2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148371558|gb|ABQ61537.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840] Length = 885 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ V + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDHVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + D + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGDSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|170019057|ref|YP_001724011.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739] gi|205830085|sp|B1IUY2|SYA_ECOLC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169753985|gb|ACA76684.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739] Length = 876 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 397/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 PANE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PANENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|30064057|ref|NP_838228.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|56480163|ref|NP_708505.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301] gi|110806677|ref|YP_690197.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401] gi|44888327|sp|Q7UBU3|SYA_SHIFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123146773|sp|Q0T1C3|SYA_SHIF8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|30042313|gb|AAP18038.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|56383714|gb|AAN44212.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301] gi|110616225|gb|ABF04892.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401] gi|281602067|gb|ADA75051.1| Alanyl-tRNA synthetase [Shigella flexneri 2002017] Length = 876 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 398/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ ID R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADIDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IMN E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMNLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|293412052|ref|ZP_06654775.1| alanyl-tRNA synthetase [Escherichia coli B354] gi|291468823|gb|EFF11314.1| alanyl-tRNA synthetase [Escherichia coli B354] Length = 876 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|213968623|ref|ZP_03396765.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] gi|301385518|ref|ZP_07233936.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13] gi|213926556|gb|EEB60109.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] Length = 874 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 388/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P++EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R E+E+F KTL++GL +++ L+ L ++ G++ FKLYDT+G P+D+ DI R L Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++D K +HH +V G L + + + + R +NHSATH Sbjct: 508 GFLLAGDTRFDVSDTTKTGGAS-LHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|317493956|ref|ZP_07952373.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918283|gb|EFV39625.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 875 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 567/910 (62%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFYHSKGHQIVESSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFNIWADEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI A+ +VTG + + RVI DH+RS +FL++DG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAATAKVTGATD--LSSKSLRVIADHIRSCAFLVSDGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + ++G E L+ L MG A EL + + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGNMVGAKETFFYKLVAPLIEVMGPAADELKRQQSMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G PLD+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLS-GDTLDGETAFRLYDTYGFPLDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D I F +A+EEQR RAR S + S+ GA++F GYD Sbjct: 420 -VDEIGFERAMEEQRRRARE------SSGFGADYNSMIRVDGASKFSGYDH--------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N S V A+ + G+ V+ +G++ VV ++TPFYAE+GGQ+GD Sbjct: 464 --------------NQQHSSVTALFRDGQAVDVLNAGEEGVVVLNETPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ +TD QK H V +G ++ S+ TID R ++ +NHSATH Sbjct: 510 GELTAQGVSFVVTDTQKYG-QAIGHQGKVAQGSVKVGDSVEATIDEARRSRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS ++ LRFD +H + + +++ +ED VN I +NLP+ T Sbjct: 569 LLHAALRQVLGDHVSQKGSLVSDRNLRFDFSHFEAMKPEQIRQVEDIVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA A GA AL G KY++ VRV+S+ G S+ LCGGTH TG+I L I Sbjct: 629 NIMDLEDAKAKGAMALFGEKYDESVRVLSM-----GDFSTELCGGTHARQTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ AG+RRIEA+TG+ A + + + L+ AS +K +V ++ + ++ R+L+ Sbjct: 684 SEAGTAAGVRRIEAVTGEGAIAVMHQDADALREAASLVKSDAHSVAEKIRAVMDKTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + + V++K L++++D L+ ++ SG+++ Sbjct: 744 KELQQLKDQQAAQESASLSSKAVDVKGVKLLVSQLDNVEAKMLRTMVDDLKNQLGSGVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ VT+DL D+ A +L + A+ + GG GGGRP MA +GG + Sbjct: 804 LATTA-EGKVSLVAGVTKDLTDKVKAGELIGMVAQQV-GGKGGGRPDMAMAGGSDATALP 861 Query: 887 QAIAGVASFL 896 QA+AGV +++ Sbjct: 862 QALAGVEAWV 871 >gi|298292138|ref|YP_003694077.1| alanyl-tRNA synthetase [Starkeya novella DSM 506] gi|296928649|gb|ADH89458.1| alanyl-tRNA synthetase [Starkeya novella DSM 506] Length = 883 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 466/905 (51%), Positives = 618/905 (68%), Gaps = 33/905 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR TFL++F KNGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRATFLDYFAKNGHQVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+EF+L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIEFAWNLITREFEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY ED+EAF LWK+I+GL KI+RI T+DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PVEKLMVTVYHEDDEAFSLWKRIAGLPDSKIVRIATSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P +G+R+IEIWNLVFMQFEQ ER LP+ SIDTGMGLER++ VLQ Sbjct: 181 DHIPGGPPGSPDADGDRFIEIWNLVFMQFEQLPGGERLNLPRPSIDTGMGLERISAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDL + L A E++T + +G +HRVI DHLR+S+FL+ADG+LP+NEGRGY Sbjct: 241 THDNYEIDLMRALTGAVEEMTDVPADGPQKASHRVIADHLRASTFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM L+P L EMG A+PE+++A+ L+ ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMHRLVPILVREMGRAFPEIVRAEPLVTETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +L+ LG +G+ AFKLYDT+G PLD+ +D L ARG +D+ SFN Sbjct: 361 KTLERGLSILETESEGLGAGAKFSGETAFKLYDTYGFPLDLTEDALRARG-VNVDVDSFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G T+ +WF+++E+ G T+F+GY Sbjct: 420 AAMERQRAEARASWAGSGEAATDTVWFAVREEVGPTEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V +G+ VE +G + VV +QTPFY E+GGQ+GDTG G+G Sbjct: 461 ----GTETAEGTVTALVTEGKRVETLPAGARGLVVLNQTPFYGESGGQVGDTGTMSGEGG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +L++T QKK IF H VE G L L L +D + R+ + NHSATHLLH AL Sbjct: 517 LKLRVTGTQKKLGDIFAHEVEVEEGTLTIGAPLALFVDGERRQAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD +H KP+ +AELK++ED N I+ +N PVVTR+M +D Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPVEAAELKAVEDIANRIVLRNEPVVTRLMAVDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI SGA AL G KY D VRVVS+ + G +S LCGGTHV+ TG+I L+ ++ ES++ Sbjct: 637 AIESGARALFGEKYGDEVRVVSMGTDPGNGAPYSVELCGGTHVARTGDIGLVSVLGESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH-- 774 AG+RRIEA+TG AR HL Q L+ A L+ G V R+ ++ EE RKL+ Sbjct: 697 GAGVRRIEAMTGDAARHHLNAQSRALQGAADVLRAPVGEVEARIAQLVEERRKLERELGD 756 Query: 775 AKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 AKRKL + + + V ++ +S +D K+LKS+ D +K+I SGI+ +VG++ Sbjct: 757 AKRKLAMGGGAASEEPARTVGAVKLLARQVSGIDLKDLKSLADEGKKRIGSGIVAIVGVT 816 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 +E +A +++ VT+DL +++AV L R A+ LGG GGGGRP MAQ+GGP+G +A +A+A Sbjct: 817 EEGRAGLVVGVTDDLTGKYDAVALVRRGAEALGGKGGGGRPDMAQAGGPDGGRAAEALAA 876 Query: 892 VASFL 896 + + L Sbjct: 877 IENAL 881 >gi|74313262|ref|YP_311681.1| alanyl-tRNA synthetase [Shigella sonnei Ss046] gi|157158305|ref|YP_001464004.1| alanyl-tRNA synthetase [Escherichia coli E24377A] gi|191167095|ref|ZP_03028916.1| alanyl-tRNA synthetase [Escherichia coli B7A] gi|193065058|ref|ZP_03046133.1| alanyl-tRNA synthetase [Escherichia coli E22] gi|193069650|ref|ZP_03050602.1| alanyl-tRNA synthetase [Escherichia coli E110019] gi|194427866|ref|ZP_03060412.1| alanyl-tRNA synthetase [Escherichia coli B171] gi|209920136|ref|YP_002294220.1| alanyl-tRNA synthetase [Escherichia coli SE11] gi|218555239|ref|YP_002388152.1| alanyl-tRNA synthetase [Escherichia coli IAI1] gi|218696288|ref|YP_002403955.1| alanyl-tRNA synthetase [Escherichia coli 55989] gi|256019527|ref|ZP_05433392.1| alanyl-tRNA synthetase [Shigella sp. D9] gi|260845339|ref|YP_003223117.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|260856802|ref|YP_003230693.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|260869370|ref|YP_003235772.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|293449010|ref|ZP_06663431.1| alanyl-tRNA synthetase [Escherichia coli B088] gi|307314418|ref|ZP_07594023.1| alanyl-tRNA synthetase [Escherichia coli W] gi|331669429|ref|ZP_08370275.1| alanine--tRNA ligase [Escherichia coli TA271] gi|123616373|sp|Q3YYG6|SYA_SHISS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830081|sp|A7ZQC5|SYA_ECO24 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|73856739|gb|AAZ89446.1| alanyl-tRNA synthetase [Shigella sonnei Ss046] gi|157080335|gb|ABV20043.1| alanyl-tRNA synthetase [Escherichia coli E24377A] gi|190902877|gb|EDV62605.1| alanyl-tRNA synthetase [Escherichia coli B7A] gi|192927355|gb|EDV81974.1| alanyl-tRNA synthetase [Escherichia coli E22] gi|192957013|gb|EDV87464.1| alanyl-tRNA synthetase [Escherichia coli E110019] gi|194414099|gb|EDX30375.1| alanyl-tRNA synthetase [Escherichia coli B171] gi|209913395|dbj|BAG78469.1| alanyl-tRNA synthase [Escherichia coli SE11] gi|218353020|emb|CAU98845.1| alanyl-tRNA synthetase [Escherichia coli 55989] gi|218362007|emb|CAQ99613.1| alanyl-tRNA synthetase [Escherichia coli IAI1] gi|257755451|dbj|BAI26953.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|257760486|dbj|BAI31983.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|257765726|dbj|BAI37221.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|291322100|gb|EFE61529.1| alanyl-tRNA synthetase [Escherichia coli B088] gi|306905986|gb|EFN36507.1| alanyl-tRNA synthetase [Escherichia coli W] gi|315061973|gb|ADT76300.1| alanyl-tRNA synthetase [Escherichia coli W] gi|323180115|gb|EFZ65667.1| alanyl-tRNA synthetase [Escherichia coli 1180] gi|323377445|gb|ADX49713.1| alanyl-tRNA synthetase [Escherichia coli KO11] gi|323946425|gb|EGB42453.1| alanyl-tRNA synthetase [Escherichia coli H120] gi|324119946|gb|EGC13824.1| alanyl-tRNA synthetase [Escherichia coli E1167] gi|331063097|gb|EGI35010.1| alanine--tRNA ligase [Escherichia coli TA271] gi|332103001|gb|EGJ06347.1| alanyl-tRNA synthetase [Shigella sp. D9] Length = 876 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|15832808|ref|NP_311581.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|168749982|ref|ZP_02775004.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|168755438|ref|ZP_02780445.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|168762908|ref|ZP_02787915.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501] gi|168768784|ref|ZP_02793791.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|168774775|ref|ZP_02799782.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|168778675|ref|ZP_02803682.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|168800226|ref|ZP_02825233.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508] gi|194433071|ref|ZP_03065354.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012] gi|195938445|ref|ZP_03083827.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi|208805868|ref|ZP_03248205.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208813761|ref|ZP_03255090.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208818286|ref|ZP_03258606.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209398791|ref|YP_002272160.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|217327497|ref|ZP_03443580.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254794638|ref|YP_003079475.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|291284024|ref|YP_003500842.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|20532246|sp|Q8X3W8|SYA_ECO57 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13363025|dbj|BAB36977.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|187769613|gb|EDU33457.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|188015823|gb|EDU53945.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|189003197|gb|EDU72183.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|189357241|gb|EDU75660.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|189362083|gb|EDU80502.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|189366853|gb|EDU85269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501] gi|189377449|gb|EDU95865.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508] gi|194418798|gb|EDX34884.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012] gi|208725669|gb|EDZ75270.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208735038|gb|EDZ83725.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208738409|gb|EDZ86091.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209160191|gb|ACI37624.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|217319864|gb|EEC28289.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254594038|gb|ACT73399.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|290763897|gb|ADD57858.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|320640339|gb|EFX09878.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101] gi|320645886|gb|EFX14867.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89] gi|320651186|gb|EFX19621.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687] gi|320656736|gb|EFX24624.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662279|gb|EFX29676.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905] gi|320667330|gb|EFX34288.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61] Length = 876 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|187734262|ref|YP_001881554.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94] gi|205830210|sp|B2U049|SYA_SHIB3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187431254|gb|ACD10528.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94] Length = 876 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|295688603|ref|YP_003592296.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756] gi|295430506|gb|ADG09678.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756] Length = 880 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 447/904 (49%), Positives = 588/904 (65%), Gaps = 34/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F K H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P + Sbjct: 1 MPSLNEIRSTFLDYFGKADHAVVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT EF L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLLTGEFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PKEKLLVTVYHTDDEAADLWKKIAGLSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG P E+G+R+IEIWNLVFMQFEQ +R LPK SIDTGMGLER+A VLQ Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGDRVSLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD+DLFK LI AS ++TG+K EG+ +HRVI DHLRSSSFL+ADG+ P+NEGRGY Sbjct: 241 VHNNYDVDLFKALIAASVELTGVKAEGDQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L P L EMG AYPEL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGAQEPLMHRLAPTLVAEMGQAYPELRRAEASIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LLD ++L +L+G+ AFKLYDT+G PLD+ QD + A+GL +D F+ Sbjct: 361 TTLGRGMGLLDEATANLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+++QR ARA+ G G WF++KEK GAT F+GY+ Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFAIKEKNGATDFVGYETTE--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + +V+AIV G V+ A G VEV+ D+T FYAE+GGQ GD G +G Sbjct: 465 --------TTGVVQAIVVDGAEVQSATGGTTVEVLLDRTSFYAESGGQAGDQGALEANGR 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK+A + VH G L+ +V+++D R+ NHSA HL+H AL Sbjct: 517 ENRVIDTQKQAGELHVHRV-ELSGELKVGDKVVVSVDADRRQTTRSNHSAAHLVHAALHH 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P+T EL IE VN +I QN+P T+ M ++A Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTPEELDKIEAEVNAVIRQNVPAETKEMAPQEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ ++ +S LCGGTHVS TG+I L IVSE + Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLTDESKAYSVELCGGTHVSRTGDIALFKIVSEQGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ AR L+ Q KSLA K V RV+ + + ++L+ A+ Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKSLADQFKTPVAEVAQRVDALIADRKRLEKELAE 755 Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + V ++ ++ V KEL+ V + +K++ SG++ LVG S Sbjct: 756 AKKQLALGGGGAASGPEDVNGVALIARVLDGVGGKELRGVAEEFKKQLTSGVVALVGTS- 814 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA+V + VT DL +F+A DLA+ + +GG G GG+ AQ G P+ +KAD+ +A V Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKADEGLAAV 874 Query: 893 ASFL 896 + L Sbjct: 875 KAAL 878 >gi|307132211|ref|YP_003884227.1| alanyl-tRNA synthetase [Dickeya dadantii 3937] gi|306529740|gb|ADM99670.1| alanyl-tRNA synthetase [Dickeya dadantii 3937] Length = 875 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 539/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSPQWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLFK LI + V G N + RVI DH+RS +FLIADG++ Sbjct: 243 RISAVLQHVNSNYEIDLFKALIAEAASVVGTDD--LNNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL + + L+E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIKVMGPAAEELQRQQGLVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL+LLD + L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQLK-GDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E QR RAR + + SL +T F GY+ Sbjct: 420 -VDEEGFERAMEAQRQRAR------DASGFGADYNSLIRVDESTTFCGYERTDQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V AI +QGE V+E +G V+ +TPFY E+GGQ+GD Sbjct: 467 -----------------QSKVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D QK + H + +G LR + +D+ R ++ +NHSATH Sbjct: 510 GELTSAAARFSVADAQKYGQ-AIGHIGKLTQGSLRVNDKVDAVVDHVRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN I +NLPV T Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDSYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A A GA AL G KY + VRV+S+ G S LCGGTH TG+I L IV Sbjct: 629 DVMALDAARAKGAMALFGEKYEENVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A L Q++ L + +K N+ +V + E R L+ Sbjct: 684 SESGTAAGIRRIEAVTGENAIVALHHQNDLLHEVTQLVKGDSNNLADKVRSLLERTRGLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S I V + +S V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQQAAQESSSLSSKAKDINGVKLLVTQLSNVEPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT++L DR A +L A + GG GGGRP MAQ+GG + + Sbjct: 804 L-STVADGKVSLIAGVTKELTDRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALP 861 Query: 887 QAIAGVASFL 896 A+ + +++ Sbjct: 862 SALTSIEAWV 871 >gi|168787948|ref|ZP_02812955.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869] gi|261225988|ref|ZP_05940269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000] gi|261256754|ref|ZP_05949287.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966] gi|189372228|gb|EDU90644.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869] Length = 876 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED +N I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLMNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|330879688|gb|EGH13837.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 874 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 388/912 (42%), Positives = 538/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASARAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P++EGRGYVLRRI+RRA + LG ++ AL TEMGSA+PEL+Q + IE L Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +++ L+ L ++ G++ FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++D K F+HH +V G L + + + + R +NHSATH Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|82778066|ref|YP_404415.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197] gi|123561812|sp|Q32CN1|SYA_SHIDS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|81242214|gb|ABB62924.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197] Length = 876 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|331678669|ref|ZP_08379343.1| alanine--tRNA ligase [Escherichia coli H591] gi|331073499|gb|EGI44820.1| alanine--tRNA ligase [Escherichia coli H591] Length = 876 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQERANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|269140202|ref|YP_003296903.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|267985863|gb|ACY85692.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|304560033|gb|ADM42697.1| Alanyl-tRNA synthetase [Edwardsiella tarda FL6-60] Length = 875 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 385/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYESDDEAYDIWANEVGVPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG P E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +V G+ + + RVI DH+RS +FL++DG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVSD--LSSKSLRVIADHIRSCAFLVSDGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG E L+ L MGSA L Q + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGSAADALAQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G PLD+ D+ RGL Sbjct: 361 KTEEEQFARTLERGLTLLDDELSTLD-GDTLDGETAFRLYDTYGFPLDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E QR RAR S + S+ G+T F GY Sbjct: 420 -VDEEGFERAMEAQRRRARE------SSGFGADYNSMIRVDGSTDFTGY----------- 461 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++V A+ G+ V+ +G++ VV QTPFYAE+GGQ+GD Sbjct: 462 ------------HLQQQDALVTALFHNGQAVDALQAGEEGVVVLAQTPFYAESGGQVGDR 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G R + D QK + H V +G LR + +ID R ++ +HSATH Sbjct: 510 GELTAQGCRFVVEDTQKYGQ-AIGHLGKVAQGSLRVGERVQASIDGARRERIRQSHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL ++LG HV+Q GS ++ LRFD +H++ + +++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPQQIRQVEDIVNAQIRRNLPIDT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M E+A A GA AL G KY+ +VRV+S+ G S+ LCGGTH TG+I L IV Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG++A + + + L+ AS +K +V ++ + E+ R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLE 743 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ ++ V + + V+ K L++++D L+ ++ S I++ Sbjct: 744 KALQQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMGSCIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L K S++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATAEA-GKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 QA+A V ++ Sbjct: 862 QALASVTDWV 871 >gi|239996387|ref|ZP_04716911.1| alanyl-tRNA synthetase [Alteromonas macleodii ATCC 27126] Length = 865 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 379/901 (42%), Positives = 535/901 (59%), Gaps = 48/901 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R F+++F+ +GH+ + SSSL+P +DPTL+FTN+GM FK+ F G EK Y Sbjct: 4 STADLRNKFIDYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDCFLGAEKRSYTRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE L + Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIEFAWNFLTKEIGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY ED+EAF +W+ G+ +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183 Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG P E+G+R+IEIWNLVFMQF +Q LPK SIDTGMGLER++ +LQ Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF++LI+++ + G + + RVI DH+RS SFLI DG++P+NEGRGYVL Sbjct: 244 SNYEIDLFQNLIKSAASIVGSED--LENKSLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG + L+ +L EMG AYPEL+ +IE+ LR E+E+F KT Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLAKEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG+ +L+ L L + + GDV FKLYDT+G P D+ D+ L ID F A Sbjct: 362 LARGMAILNDTLETLE-GDTVPGDVVFKLYDTYGFPTDLTNDVAREHDLK-IDEEGFEAA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ + + + S T F GY + G Sbjct: 420 MQ------AQRARAQQASNFGADYNSKLAIDHTTSFTGYTDVEG---------------- 457 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + V ++ VE+ GQ+ VV D TPFYAE+GGQ GD G Sbjct: 458 -------QANVVELIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +TD QK H + +G + + ID NR + NHSATHLLH AL IL Sbjct: 511 IVTDTQKMGNAF--AHKGIAKGSVSKGDTATAAIDAANREAIKKNHSATHLLHAALREIL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + +RFD +H + +T+ +L IE VN I N + T +M+ ++A A Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTAEQLAEIERRVNQEIRANHTLATELMDLDEAKA 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY+++VRVV++ G S LCGGTHV+ TG+I L I SE+ I +G+R Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVTRTGDIGLFKITSEAGIASGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG+ A + Q L SL++ LK NV+ RV + + ++L+ K +L Sbjct: 684 RIEAVTGEHALEVVQTQQATLSSLSALLKTDSQNVLDRVVSLQNQTKELEKALNSAKQKL 743 Query: 782 NVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + + +I V + + V++K L+S+MD ++ +I GI++L G++ + K Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANDAKV 802 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +++ VT++L + A +L A + GG GGGRP MAQ+GG QA+ V ++L Sbjct: 803 NLIAGVTKNLTSKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDQPENLGQALDSVNAWL 861 Query: 897 K 897 + Sbjct: 862 Q 862 >gi|56475970|ref|YP_157559.1| alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1] gi|81598995|sp|Q5P7Q3|SYA_AZOSE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56312013|emb|CAI06658.1| Alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1] Length = 873 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 372/911 (40%), Positives = 532/911 (58%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH+++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSAEIREKFLKFFESKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+EF L Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWELLTEEFGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY +D+EA+ +W K G+ A+++IRI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLWVTVYADDDEAYDIWTKEIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG P E+G+RYIEIWN VFMQF + LP+ S+DTGMGLER+ Sbjct: 181 IFYDHGPEIWGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPRPSVDTGMGLERV 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + VLQ +NY+IDLF+ LI+A+ + TG + + +VI DH+R+ SFLIADG++P Sbjct: 241 SAVLQHVHSNYEIDLFQTLIRAAARETGCAD--LDSPSLKVIADHIRACSFLIADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+P L TEMG AYPEL + + + L+ Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGSRAAFFHRLVPDLVTEMGPAYPELKAGQARVADVLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF T++ G+ +L+ L+ + NG+ AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEERFFATIENGMAILETELAAMATAGSRTFNGETAFKLHDTYGFPLDLTADVCRERDVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + A+ Q+ +ARA + +L+ + T+F GY+ L Sbjct: 419 VDAAAF-DAAMARQKEQARAAGKFRMAM-------NLEYEGPETKFHGYERLEER----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 466 ------------------GTVLALYKDGAPVVELQEGDIGVVVLDNTPFYAESGGQVGDR 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G ++ D QK ++ HH +V+ G L L +D + R NHS TH Sbjct: 508 GELRGSAGIFEVEDTQKIQAAVYGHHGVVKTGRLAVGQELGARVDGEARASTQRNHSVTH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + PD RFD H+ P++ E++ +ED VN I N+ Sbjct: 568 LMHKALREVLGAHVQQKGSQVDPDKTRFDFAHTAPLSPEEIREVEDLVNAEILANVATEA 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M+ +DA SGA L G KY D VRV+++ S LCGGTHV+ TG+I L IV Sbjct: 628 RVMSIDDAQKSGAMMLFGEKYGDEVRVLAIGS------SKELCGGTHVARTGDIGLFKIV 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + Q+ +++ +++ LKV V R+ I + R L+ Sbjct: 682 SEGGVAAGVRRIEAVTGANALRYAQEQERRVQGISALLKVQPDEVAERIAGILDNVRALE 741 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ K +L ++ ++ ++ D L+ +D L+ K++S +I+ Sbjct: 742 KELARMKSRLAASQGDELVAQAVEVRGAKVLAAMLEGADVATLRETLDKLKDKLKSAVIV 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + + S++ VT DL + A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 802 LAAVA-DGRVSLIAGVTSDLTAKLKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDPAHLP 859 Query: 887 QAIAGVASFLK 897 A+A V ++ + Sbjct: 860 AALASVKAWAE 870 >gi|254714269|ref|ZP_05176080.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261322043|ref|ZP_05961240.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261294733|gb|EEX98229.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1] Length = 885 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 474/893 (53%), Positives = 622/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|153009317|ref|YP_001370532.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188] gi|205830165|sp|A6X0E9|SYA_OCHA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151561205|gb|ABS14703.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188] Length = 885 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 481/893 (53%), Positives = 621/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++++KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYYRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ ++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGEFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRADALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LL L + + L+G+ AFKLYDT+G PLD+ QD L RG +D F+ Sbjct: 361 KTLDRGLGLLSDATESLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTDGFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A+V+ G V+ A G V VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TEVAEGVITALVRDGAEVQSAAEGDVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I D QKK EG+FVH V +G +T ++ L +D R ++ NHSATHLLH AL Sbjct: 517 AIAIKDTQKKGEGVFVHIGEVTKGTAKTGDAVELKVDSVRRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV+Q GS + PD LRFD +H KPI++ EL +E+ N+II QN PV TR+M +DA Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELTQVENLANEIILQNAPVSTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR +L QDE++K++A LK + + RV + +E +KL+ Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPSEALERVNALLDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 GI ++ KAS + VTEDL+ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GIGEDSKASAVAAVTEDLVGRFSAVDLVRAASVALGGAGGGGRPDMAQAGGPD 869 >gi|33597425|ref|NP_885068.1| alanyl-tRNA synthetase [Bordetella parapertussis 12822] gi|41018188|sp|Q7W6N4|SYA_BORPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33573852|emb|CAE38162.1| alanyl-tRNA synthetase [Bordetella parapertussis] Length = 874 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 397/911 (43%), Positives = 547/911 (60%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y+ Sbjct: 1 MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEIWGGPPGSLEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI A+ + TG+K +N + +VI DH+R+ +FLI DGI+P+ Sbjct: 241 AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL Q + + LR Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++RFG+TL+ G+ +LDG L+ + K + L+G F LYDT+G P+D+ DI RG + Sbjct: 359 EEKRFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERG-VEV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A++ QR +ARA + L + T+F GY+ L S Sbjct: 418 DMAGFEAAMQRQREQARAAGKFKMAEG-------LSYEGAETRFEGYESLELSGV----- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ +G VE+ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 466 -----------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D K G+F HH +E G L+ +L+ +D R + NHSATHL+ Sbjct: 509 LEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N ++ Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L +VSE Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEAITG A + + Q+ L+ A L+ + R+ ++ E+ + L+ Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQDQNVLLQRAAGVLRAPAHELPERIAQVQEQLKALEKE 742 Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 743 LEQARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + K S++ VT DL R A DL A +GG G GGRP MA GG + Sbjct: 803 AAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKG-GGRPDMAMGGGTDLAALPA 861 Query: 888 AIAGVASFLKK 898 A+A V ++ + Sbjct: 862 AVASVQKWVDE 872 >gi|113868727|ref|YP_727216.1| alanyl-tRNA synthetase [Ralstonia eutropha H16] gi|123133735|sp|Q0K823|SYA_RALEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113527503|emb|CAJ93848.1| Alanyl-tRNA synthetase [Ralstonia eutropha H16] Length = 874 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 390/910 (42%), Positives = 535/910 (58%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK + L Sbjct: 61 TSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILYAWELLTKTYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ A++I+RI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIE+WNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+A+ + T + N + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHID--NLNQNSLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P ++ L +MG AYPEL +A+ + E L++ Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGQKTPFFHKMVADLVEQMGQAYPELAEAQSRVTEVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +LD L+ L + L+G++AFKL+DT G PLD+ QD+ + Sbjct: 359 EEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQ-EI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 G+D +F+ A+ QR +ARA + L+ T F GY+ L Sbjct: 418 GVDEAAFDAAMNRQREQARAAGKFKMAAG-------LEYTGDKTVFHGYEKLELP----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V GQ VV D TPFYAE+GGQ GD Sbjct: 466 -----------------QARVTALYVDGAAVNAMQPGQTGVVVLDNTPFYAESGGQAGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +TD K +F H +E G L+ ++ +D Q R + NHSATH Sbjct: 509 GVLKAGNAVFAVTDTTKIQADVFGHQGTLEGGALKVGDAVSAQVDAQRRARTVRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD +H+ +T +++ +E+ VN I +N Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDEQIRRVEEIVNAEILRNDDTHA 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM +DA+ SGA AL G KY D VRV+S+ S LCGGTHV TG+I L IV Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A +L G D +L A+ LK +V R+ ++ ++ R L+ Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQGLDARLNEAAAVLKAQPSELVPRIGQVQDQVRALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L I + ++ + D K L+ MD L+ K++S I+ Sbjct: 743 KELERLKSKLAASQGDELAAQAVDIKGLKVLAAQLDGADVKTLRETMDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L +S + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LGAVS-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFL 896 QA+AGV ++ Sbjct: 861 QALAGVGEWV 870 >gi|239832092|ref|ZP_04680421.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301] gi|239824359|gb|EEQ95927.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301] Length = 885 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 481/893 (53%), Positives = 624/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDEAISFAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ ++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K +G +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKADGELRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPTLIREMGQAYPELIRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D F+ Sbjct: 361 KTLDRGLGLLSDATENLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTDGFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMERQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ A G+ V VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVVAALVRDGAEVQSASEGEVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I D QKK EG+FVH V +G ++T ++ L +D R ++ NHSATHLLH AL Sbjct: 517 VIAIKDTQKKGEGVFVHIGEVAKGTVKTGDAVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV+Q GS + PD LRFD +H KPI++ EL +E+ N+II QN PV TR+M +DA Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELAKVENLANEIILQNAPVSTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG+ AR +L QDE++K++A LK + + RV + +E +KL+ Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPAEALERVNALLDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTEDLL RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDDKASAVAAVTEDLLGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|82545227|ref|YP_409174.1| alanyl-tRNA synthetase [Shigella boydii Sb227] gi|123558824|sp|Q31X62|SYA_SHIBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|81246638|gb|ABB67346.1| alanyl-tRNA synthetase [Shigella boydii Sb227] gi|320186483|gb|EFW61211.1| Alanyl-tRNA synthetase [Shigella flexneri CDC 796-83] gi|332091817|gb|EGI96895.1| alanyl-tRNA synthetase [Shigella boydii 3594-74] Length = 876 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKDANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|15803211|ref|NP_289243.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 EDL933] gi|12517136|gb|AAG57801.1|AE005498_2 alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EDL933] Length = 878 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 393/894 (43%), Positives = 553/894 (61%), Gaps = 56/894 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGT 855 >gi|288960191|ref|YP_003450531.1| alanyl-tRNA synthetase [Azospirillum sp. B510] gi|288912499|dbj|BAI73987.1| alanyl-tRNA synthetase [Azospirillum sp. B510] Length = 889 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 449/895 (50%), Positives = 587/895 (65%), Gaps = 37/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR TFL+FF K GH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MQTANDIRRTFLDFFAKQGHQIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGAETRPYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+TKE+ L Sbjct: 61 AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIAFAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TV+ DE+A +W+K++GLS D+IIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PADKLLVTVHTSDEDAAAIWRKVAGLSDDRIIRIPTDDNFWRMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG P E+G+R+IEIWNLVFMQ+EQ LPK SIDTGMGLER+A VLQ Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDNLVPLPKPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDL + LI AS + T +G + V+HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLMRALIMASAEATKTAADGAHAVSHRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+PAL +MG AYPEL +A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHMIGAREPLMHRLVPALIQQMGDAYPELNRARALIVETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ + HLG+ + L GDVAFKLYDT+G PLD+ QD+L + G+D F Sbjct: 361 QTLERGLRLLEDEVGHLGEGQPLAGDVAFKLYDTYGFPLDLTQDVLRGQNR-GVDEAGFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQR +AR G G TEK+W+ +K++ GAT+F GYD Sbjct: 420 AAMDEQRRKARESWAGSGEVGTEKLWYEIKDELGATEFFGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V AIV+ VE A G +V VV +QTPFY E+GGQ+GD G G Sbjct: 462 -----TEVAEGKVTAIVKGDTRVEAAAIGDQVMVVVNQTPFYGESGGQVGDAGVIFSAGG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++D KK ++ H V +GIL + L +D R + NHSATHLLH AL Sbjct: 517 AEVAVSDTLKKLGAVWAHVGTVTKGILSVGDVVELRVDSSRRAAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + P+ LRFD++ +T+A++ +IED VN + N VVTR+M+ ++ Sbjct: 577 HRLGDHVTQKGSLVAPERLRFDISQPTGLTAADIAAIEDEVNRRVLANSEVVTRLMSPDE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715 A A GA AL G KY D VRVVS+ G +S LCGGTHV TG+I + IVSE + Sbjct: 637 ARAQGAMALFGEKYGDEVRVVSMGGPHGELDRDYSIELCGGTHVRRTGDIGVFKIVSEGA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TG A++ L +D L AS LKV V RV + EE RK++ A Sbjct: 697 VAAGVRRIEALTGTGAKAWLSERDHLLTEAASVLKVKPDEVPARVATLVEERRKMERELA 756 Query: 776 KRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + Q+ + +A V + ++ + +K+LK + D L+K++ SG+++L+ Sbjct: 757 DLRRQVAMGGGAKADGGNEAKDVAGVKLAARVVEGLPAKDLKPMADELKKQVGSGVVVLI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 S E KAS++I VT+DL +AVDL R+ A+ LGG GGGGRP MAQ+GGP+ + Sbjct: 817 A-SNEGKASIVIGVTDDLTGSLSAVDLVRVGAEALGGKGGGGRPDMAQAGGPDAS 870 >gi|225852697|ref|YP_002732930.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|256263812|ref|ZP_05466344.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|225641062|gb|ACO00976.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|263093940|gb|EEZ17874.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|326409221|gb|ADZ66286.1| alanyl-tRNA synthetase [Brucella melitensis M28] gi|326538929|gb|ADZ87144.1| alanyl-tRNA synthetase [Brucella melitensis M5-90] Length = 885 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKGKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869 >gi|95928611|ref|ZP_01311358.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] gi|95135401|gb|EAT17053.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] Length = 880 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 370/909 (40%), Positives = 547/909 (60%), Gaps = 42/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+++F+K+GH +PSSSLIP NDPTL+FTN+GM FK++F G E Y+ Sbjct: 1 MLTANEIRARFIQYFEKHGHRAVPSSSLIPHNDPTLLFTNAGMNQFKDLFLGAETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ W+ LTKE L Sbjct: 61 ATSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKQDAIRFGWEFLTKEMKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 L+++V+++D+EAF +W+ G+ ++I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 121 PVEDLWVSVFEDDDEAFNIWRDEIGVREERILRLGEKDNFWAMGDTGPCGPCSEIHIDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + +R++E+WNLVFMQ+E+ LPK SIDTGMGLER+ V+Q Sbjct: 181 EEMTCGPDCALGVCDCDRFLELWNLVFMQYERSADGTLSPLPKPSIDTGMGLERITAVVQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +NYD D + +I EQ+ G Y N V+ RVI DH R+++FLIADG+LP+NEG Sbjct: 241 GVKSNYDTDSLRAIIAHIEQLAGKTYGDNEDADVSMRVIADHSRATAFLIADGVLPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRIMRRA +A++LG+ EP++ + M AYPEL + + + +++E+E Sbjct: 301 RGYVLRRIMRRAARHAKMLGFDEPVLFKTATFVMESMKDAYPELEERLDYVAKVVKNEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL GL +L+ + L ++ GD F+LYDT G P+D+ DI+ +D Sbjct: 361 RFIQTLGNGLRILNEEIDTLKSKGQTVIPGDTVFRLYDTFGFPVDLTADIV-EGQNFTLD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +E+QR +AR + G G ++ L E+ + +F GYD Sbjct: 420 EAGFETCMEQQRQKARENWKGSGEEGIGAVYKQLAEQGMSCEFTGYD------------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++ G+ VE +G+ VE++ TPFY E+GGQ GD G Sbjct: 467 ----------KCDDFGTVLALLKDGQQVESVSAGETVEIITSITPFYGESGGQSGDGGTL 516 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G++ I++ K + VH A ++ G L + L +D + R ++NHSATH+L Sbjct: 517 TAEGVKATISETLKPLPNLHVHVATIDEGTLSVGQAAELHVDVEQRTACALNHSATHILQ 576 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L +LG HV Q GS +TPD LRFD H +T E++ +E+ VN I +N V+T +M Sbjct: 577 AVLCEVLGDHVKQAGSQVTPDRLRFDFIHFSALTPEEIQQVEEKVNQRIRENAGVMTDVM 636 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N +DA+ +GA AL G KY D VRVV + G S LCGGTHVS+TG I L IV E+ Sbjct: 637 NTDDAVKAGATALFGEKYGDSVRVVRM-----GDFSMELCGGTHVSATGNIGLFKIVQEA 691 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A S + Q++ + LA+ +K + R++++ E ++L+ Sbjct: 692 GIAAGVRRIEAVTGSGALSTVREQEQMIGDLAALVKSDPSQLATRLKKLMEHQKELERQV 751 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + +L+ + I +V ++ I +D K+L+ D L+ ++QSG+I+L G Sbjct: 752 STLEDRLSADRAGNLMDQVQTIDNVKLLAVRIDNLDGKQLREQADKLRDQLQSGVIVLGG 811 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K ++L+ VT+DL + A +L + A+++ GG GGGRP +AQ+GG + + A+ Sbjct: 812 V-NDGKVALLVSVTKDLTNTLKAGNLIKPLAEMV-GGRGGGRPDLAQAGGSQPEQLNNAL 869 Query: 890 AGVASFLKK 898 A + + Sbjct: 870 EAAAGIVGE 878 >gi|209519489|ref|ZP_03268284.1| alanyl-tRNA synthetase [Burkholderia sp. H160] gi|209500090|gb|EEA00151.1| alanyl-tRNA synthetase [Burkholderia sp. H160] Length = 874 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 378/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 KDKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LIQA+ + TG+ GNN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQALIQAAGRETGVTDLGNN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL QA+ + + L Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGEAYPELAQAEQRVTDVLYQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIENGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V++ +GQ+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVDGASVQQVQAGQQAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ + ID R + + NHSATH Sbjct: 509 GVLANASTRFAVVDTLKVQADVVGHHGTLEQGTLKVGDIVKAEIDAMRRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T +++ +E+ VN + N P + Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M+ +DA+ GA AL G KY D VRV+ + S LCGGTHV+ +G+I IV Sbjct: 629 RVMSYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRSGDIGFFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG A ++ + ++ + A+ LK + R+ ++ ++ + L+ Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELEGRVNAAAAVLKAQPAELTQRIGQVQDQVKALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K ++ +I V+ ++ + D K L+ +D L+ K++S I+ Sbjct: 743 KELSALKSKMASSQGDELAGQAVEIGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAQLP 860 Query: 887 QAIAGVASFLK 897 A+AGV ++++ Sbjct: 861 AALAGVKAWVE 871 >gi|114562241|ref|YP_749754.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] gi|122300463|sp|Q085Z9|SYA_SHEFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114333534|gb|ABI70916.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] Length = 874 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 384/909 (42%), Positives = 544/909 (59%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FL++F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLKYFEDNGHQVVDSSSLVPTNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L + Sbjct: 64 TSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EA+ LW + G+ A+ +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAYDLWTQKIGVPAENMIRIGDNKGGAFASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+FK LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFKQLIAKTAEIIGVTD--LENKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG + L+P L + MG A L Q + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGANDAFFYKLVPTLISVMGDAAIGLKQTQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGLV+LDG L+ L + L+GD FKLYDT+G P+D+ D+ R +D Sbjct: 362 EEQFARTLERGLVILDGALNSLQ-GDTLDGDTLFKLYDTYGFPVDLTADVCRERD-INVD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + S T F GY L G Sbjct: 420 EAGFESAMAEQRSRAQAA------GNFGADYNSQLIIDAETAFSGYTELTGQPN------ 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+ G+ V+ +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 -----------------VIALYVDGKAVDTVKAGQDAVVVLDNTPFYAESGGQVGDKGLL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 DG+ + D QK + +G L L +D + R + +NHS THLLH Sbjct: 511 TADGVVFTVADTQKFGPATGHQ-GQLAQGQLVIGQQLTAQVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHVSQ GS + P+ LRFD H + + +ELK++ED VN I +N + T M Sbjct: 570 AALRQVLGSHVSQKGSLVNPERLRFDFAHFEAVKPSELKAVEDLVNTQIRRNHELCTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+D+VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 AIDEAKEKGAMALFGEKYDDQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEN 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q L A LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGIAAMAYIAEQQAMLDEAAQLLKSDSASVVVKLKAQLDKVKQLEKDL 744 Query: 775 AKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K +L + +I V + + +D L+ + D L++K++S II+L G Sbjct: 745 SQLKDKLAAAASADMAGDAVEINGVKLLVKQLDGIDPGSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +K+ K +++ V+ DL + A +L + A+ + GG GGGRP MAQ+GG A+ Sbjct: 804 TAKDGKVNLIAGVSNDLTKKVKAGELVAMVAQHV-GGKGGGRPDMAQAGGTQPENLAAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 ALVEPWVNE 871 >gi|149915205|ref|ZP_01903733.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b] gi|149810926|gb|EDM70765.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b] Length = 887 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 445/912 (48%), Positives = 592/912 (64%), Gaps = 41/912 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL FF+KN H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MPTLNDIRSTFLNFFEKNDHQIVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F + Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA +WKK +GL ++IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAADIWKKYAGLPEERIIRIATDDNFWSMGATGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ E+ + L SIDTGMGLER+ +LQ Sbjct: 181 PHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTQRDLDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS +T +G V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLLRALIEASANITDGAPDGPGNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG +P+M L+P+L T+MG AYPEL +A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHQLGAADPVMHRLVPSLVTQMGQAYPELGRAQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L D L G+ AFKLYDT G PLD+ QD L +G + +D+ F+ Sbjct: 361 QTLDRGLRLLDDELDKLASDAPLPGEAAFKLYDTFGFPLDLTQDALREKGRS-VDVAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IW+ + E G T F+GYD Sbjct: 420 EAMSEQKAKARAAWSGSGEAADATIWYDIAEDKGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G+ +E A G++V++V +QTPFYAE+GGQ+GDTG +G Sbjct: 462 -----TERAEGQIMALVRDGQRIEAASQGEEVQIVLNQTPFYAESGGQVGDTGVVRTEGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD +K G+F+H A V G + + L +D+ R + NHSA HLLH AL Sbjct: 517 AARITDT-RKVAGVFLHVAEVTEGRIVAGEAAQLEVDHTRRTAIRANHSAMHLLHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H+K +++ EL+ +E +VN I QN V TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHAKALSAEELERVEADVNGFIRQNASVDTRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I + + Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGKLDGSGKGSDGRTYSIELCGGTHVRQTGDIGVFVVTG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 + + AG+RRIEA+TG+ AR +L Q ++ +LA+ LK +VV RV+ + +E ++L Sbjct: 696 DQASSAGVRRIEALTGEAARQYLSAQAHRVDALAAELKARPDDVVTRVKALMDERKQLAN 755 Query: 773 IHAKRKLQLNVEDLSCH-------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A+ + +L + + +I V F++ ++ V K+L +++D + ++ SG + Sbjct: 756 EVAQLRRELAMAGGAGQGDGPEMREIGGVPFLAQVLRGVSGKDLPAIIDEHKARMGSGAV 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L+ + KA+V VT+DL R +AVDL R + VLGG GGGGRP MAQ GGP+ A Sbjct: 816 LLIA-DADGKAAVAAGVTQDLTGRVSAVDLVRAAVPVLGGKGGGGRPDMAQGGGPDAGNA 874 Query: 886 DQAIAGVASFLK 897 + AI L+ Sbjct: 875 EAAIKAAEQILE 886 >gi|118588631|ref|ZP_01546039.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614] gi|118438617|gb|EAV45250.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614] Length = 885 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 466/907 (51%), Positives = 629/907 (69%), Gaps = 36/907 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ FL++F+ NGHE++ S L+P NDPTLMF N+GM FKN+FTG EK Y Sbjct: 1 MTGVNEIRSAFLDYFKTNGHEVVESGPLVPRNDPTLMFANAGMNQFKNVFTGLEKRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L Sbjct: 61 AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TV+ ED++AF LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PKEKLLVTVFAEDDQAFDLWKKIAGLSEDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ ++ R LP+ SIDTGMG+ER+A V+Q Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQTPEK-RLDLPRPSIDTGMGIERIAAVMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLFK LI AS TG++ EG+ +HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 240 VHNNYDIDLFKALIAASVNATGVEAEGDATGSHRVIADHLRSTSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG +EPLM L+PAL EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGASEPLMHKLVPALVREMGRAYPELSRAEDLITETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L L+G+ AFKLYDT+G PLD+ QD L +D FN Sbjct: 360 KTLERGLGLLDTATEGLEAGGRLDGETAFKLYDTYGFPLDLTQDALR-TRDISVDTDGFN 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G GS TE +WF+LKEK+GAT F+GY+ Sbjct: 419 AAMERQKAEARAAWSGSGSAATEAVWFALKEKHGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V + + V++ +G+ VV +QTPFY E+GGQ+GDTG + G+ Sbjct: 461 -----TETAEGVVAGLAADDKEVDKLSAGESGFVVLNQTPFYGESGGQVGDTGWMLASGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +T+ QKKA+G+FVH VE G L ++L L +D+ R+ + NHSATHL+H AL Sbjct: 516 KAAVTNTQKKADGLFVHSVTVEEGELVPGLALELKVDHSRRKAIRSNHSATHLVHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS +TP+ LRFD +H KP++ EL ++E N+I+ QN PV TR+M +DA Sbjct: 576 VLGNHVAQKGSLVTPERLRFDFSHPKPVSDEELATVESFANEIVLQNAPVDTRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I +GA AL G KY + VRVVS+ + G +S LCGGTHV TG+I L+ +VSE Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGPKQGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG AR +L QD++++ LAS LK+S +V RV ++ E+ +KL+ Sbjct: 696 AVAAGVRRIEALTGSEAREYLDAQDKRMRELASLLKISADDVPARVAQLVEDRKKLEREL 755 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + + + M+ ++ ++ K+LK + D + ++ SG+++L+ Sbjct: 756 ADAKKKLAMGGGADGGTPVKEAGSFKLMARVVEGINPKDLKGMADEAKTQLGSGVVVLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++++ KA+++ VT+DL D+ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G KA QA+ Sbjct: 816 VAEDDKAAIVTAVTQDLTDKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGAKAAQAV 875 Query: 890 AGVASFL 896 A + + L Sbjct: 876 AVIEAHL 882 >gi|304310760|ref|YP_003810358.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1] gi|301796493|emb|CBL44701.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1] Length = 876 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 549/910 (60%), Gaps = 54/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL++F NGH+++PSSSLIP NDPTL+FTN+GMV FK++F G++ Y+ Sbjct: 1 MKTSEIRKAFLDYFAVNGHQIVPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDARDYRRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT + Sbjct: 61 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIRFAWEFLTGERWLK 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W + G+ D+++RI N DNFW M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTQQVGVPVDRVVRIGDNKGAPYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF++ LPK S+DTGMGLE Sbjct: 181 TEIFYDHGEEIFGGPPGSKDEDGDRYIEIWNIVFMQFDRHPDGTLNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF HL+ A +VTG K + RV+ DH+R+ +FLIADG++ Sbjct: 241 RIAAVLQHVHSNYEIDLFAHLLDAVAKVTGAKD--LQDKSLRVVADHIRACAFLIADGVV 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRIMRRA+ + LG EP L+ AL EMG AYPEL + + IE+T+ Sbjct: 299 PSNEGRGYVLRRIMRRAIRHGNKLGAQEPFFYKLVAALAAEMGDAYPELRKLQAQIEKTI 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F +TLD+GL +L+ L+ + + GD+ FKLYDT+G P D+ DI R L+ Sbjct: 359 LQEEEQFARTLDQGLRILEQELT-AHQLTEIPGDLVFKLYDTYGFPADLTADIARERDLS 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D+ F Q + Q+ R++ S G+ + + T F GY G Sbjct: 418 -LDMGGFEQRMAAQKERSQKSSQFAGN------YHDALDISTQTVFSGYSDTSG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V+A+ QG+ V +GQ VV DQTPFYAE+GGQ+GD Sbjct: 465 -----------------QAKVEALFFQGKPVSSVSAGQDAIVVLDQTPFYAESGGQVGDV 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G ++ D K+ +HH ++ G + + ++ + R+ + +NHSATH Sbjct: 508 GLIRKAGACFEVADTHKQGG-AHLHHGVLVSGQISVGDVVEAEVNAELRQAIRLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS +T LRFD ++ ++ AEL+ IE VND + N ++T Sbjct: 567 LLHAALRQVLGEHVHQKGSMVTAGRLRFDFSNPSALSPAELEQIERIVNDQVRGNSEIIT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM + A A GA AL G KY D VRV+++ S LCGGTH TG+I L ++ Sbjct: 627 EIMPIDQARAKGAMALFGEKYEDEVRVLTMGT---DCFSVELCGGTHARRTGDIGLFQLI 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + + + ++L +++S +K + NVVG+V + E R+L+ Sbjct: 684 SEGGVAAGVRRIEAVTGAAALALITNRHQQLVAISSAVKGNDENVVGKVTALVERVRQLE 743 Query: 772 LIHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K+ Q E++ ++A V ++ ++ D+K L+ + D L+ K+ I++ Sbjct: 744 KELEKQSAQRASRAGEEIISQSFELAGVKVLAAVLENQDTKALREMCDKLRDKLGDAIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G S+E K +++ V++ L + A DL A + GG GGGRP MA +GG Sbjct: 804 L-GASQEGKVNLVAGVSKTLSSKVKAGDLVNHVASQV-GGKGGGRPDMATAGGSQPENLG 861 Query: 887 QAIAGVASFL 896 AIA V +L Sbjct: 862 LAIASVRDWL 871 >gi|283786756|ref|YP_003366621.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168] gi|282950210|emb|CBG89846.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168] Length = 875 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ +IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRARIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ + GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHVWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI A +VTG + + RVI DH+RS +FL+ADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIDAVAKVTGATD--LSNKSLRVIADHIRSCAFLVADGVV 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + L+E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVGPLIEVMGSAGEELKRQQALVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GY+ L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYEHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GDT Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQQAVVVLDQTPFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVSDTQKYG-QAIGHIGTLSAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H++ + +E++++ED VN I +NLPV T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKLLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NVMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAMATVHAQSDRLNEIAHLLKGDSQNLGDKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 AALASVEAWV 871 >gi|220934463|ref|YP_002513362.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995773|gb|ACL72375.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 865 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 378/903 (41%), Positives = 541/903 (59%), Gaps = 47/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +RT+FLE+F+ GHE++PSS LIP NDPTL+FTN+GMV FK++F G+E+ Y Sbjct: 1 MKSADLRTSFLEYFRSKGHEVVPSSPLIPGNDPTLLFTNAGMVQFKDVFLGREQRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEYLTQVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180 + +L++TV++ED+EA +W K G++ ++ RI +DNFWSM +TGPCGPC+EIF+D Sbjct: 121 EEKLWVTVFEEDDEAADIWLKDVGVNPERFSRIGASDNFWSMGDTGPCGPCTEIFYDHGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E G +G+RYIEIWNLVFMQ+++ LP+ S+DTGMGLER+A V+Q Sbjct: 181 EVPGGPPGTPEADGDRYIEIWNLVFMQYDRAKDGTLTPLPRPSVDTGMGLERLAAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF++LI+A + + RVI DH+RS SFL+ADG++PANEGRGYV Sbjct: 241 HSNYEIDLFQNLIRAIRDMAKGAD--PTSPSLRVIADHIRSCSFLVADGVMPANEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + LG EP L+ L EMG AYPEL++A+ ++E LR E+ERF + Sbjct: 299 LRRIIRRAARHGHKLGLDEPFFHRLVGPLVAEMGEAYPELVKAQPMVERVLRQEEERFAE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL +L+ + L EI G F LYDT+G P+D+ DI RGL +D+ F Sbjct: 359 TLEKGLRILEEDIDGLKGTEI-PGKTIFVLYDTYGFPVDLTGDIARERGLT-LDMAGFEA 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR RARA + + + G + F GY+ L G Sbjct: 417 EMEIQRERARAA------SHFDADYHRKLKIEGESAFTGYEHLDG--------------- 455 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V A+ + GE V+ SG+ VV D+TPFYAE+GGQ+GDTG + +G+ Sbjct: 456 --------QGRVTALFKDGEPVDALASGEHGLVVLDETPFYAESGGQVGDTGELLAEGVI 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++TD +K H V G + L ++ R+ + +NHSATHL+H AL I Sbjct: 508 FEVTDTRKHGA-AHAHMGRVVEGRIAQGDVLGAKVNQARRQAVVLNHSATHLMHAALREI 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + PD LRFD +H +P+++ EL+ IE VN+ I N RIM + A+ Sbjct: 567 LGDHVQQKGSLVAPDRLRFDFSHFQPVSAEELERIERRVNEAIRANAEAEARIMPIDQAL 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL G KY D VRV+S+ S+ LCGGTHV TG+I + I+SES + +GI Sbjct: 627 ESGAMALFGEKYGDEVRVLSMGG-----FSTELCGGTHVRRTGDIGVFKILSESGVASGI 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A +++ ++ L +A +K +G++ +V + E R+L+ K + Sbjct: 682 RRIEAVTGENALNYIGETEKNLSRIAEMVKAGRGDLDEKVALLVERSRQLEKELEALKGK 741 Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L ++ + ++ + D K L+ +D L+ K+ ++L + K+ K Sbjct: 742 LASAAGSSLADQAVEVNGIKVLAANLEGADPKSLRDTVDQLKNKLGEAAVVLATV-KDGK 800 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+ R A +L A+ + GG GGGRP MA +GG + + A+A V + Sbjct: 801 VSLVAGVTQGQTARLKAGELVNAVAQQV-GGKGGGRPDMAMAGGTDPSGLPGALASVPDW 859 Query: 896 LKK 898 +++ Sbjct: 860 VRE 862 >gi|33152493|ref|NP_873846.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP] gi|38372509|sp|Q7VLK0|SYA_HAEDU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33148716|gb|AAP96235.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP] Length = 874 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 379/911 (41%), Positives = 543/911 (59%), Gaps = 56/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSS+L+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFNSKGHTVVPSSALVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ AW+ LT K Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFAWEFLTSEKWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ ++ IIRI N DNFW+M +TGPCGP Sbjct: 121 HLPKEKLYVTVYETDDEAYDIWHKTVGVPSEHIIRIGDNKGVPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPG++ E+G+RYIE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGESFWGGLPGTAEEDGDRYIEVWNIVFMQFNRQADGTLAKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + + + RVI DH+R+ S+LI DG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLHVAD--LDNKSLRVIADHIRACSYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L MG A L + I++T Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLAKVMGQAGEILTDKQSYIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R Sbjct: 359 LKTEEEQFARTLERGLALLEEALTKVE-NQTLSGEVAFKLYDTYGFPLDLTADVCRERD- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID SF + QR RA++ S + S+ + T FIGYD Sbjct: 417 IVIDEASFEIEMTAQRERAKSSSNFG------ADYNSVIKVEAETAFIGYDCF------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ V++ SG+ VV D+TPFYAE GGQ+GD Sbjct: 464 ----------------NAEAKVIALFSNGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK +F H V G L + +D R+ ++ NHSAT Sbjct: 508 SGLITTAFCQFAVADTQKYG-QVFGHIGQVVSGSLAIGDIISAQVDIARRQAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV Q GS ++ + LRFD + S+ ++ A+L+ IE VN I QNL V Sbjct: 567 HLLHSALRQVLGEHVVQKGSLVSENVLRFDFSQSQAVSKAQLEEIERIVNRQIRQNLAVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A G AL G KY D VRVV + S LCGGTHV TGEI L + Sbjct: 627 IETMDIETAKEKGTVALFGEKYGDVVRVVGMT-----DFSIELCGGTHVKHTGEIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SES++ AGIRR+EA+T + A + L Q + + A LK ++V ++ ++ ++ ++ Sbjct: 682 ISESAVAAGIRRVEALTAENAINWLHNQQKIIHQSAELLKTDSLSLVDKIYQLQDKIKRN 741 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K +L + +I +N + + ++SK L++++D L+ ++ S I+ Sbjct: 742 EKELQHFKDKLAAQAGAELAKQVVQINGINVVIQKLEGIESKSLRTMVDDLKNQLSSVIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +S + K ++++ VT+DL ++ NA +L L A+ + GG GGGRP MA +GG Sbjct: 802 VFGSVSAD-KVNLIVGVTKDLSNKVNAGELVGLIAQQV-GGKGGGRPDMAMAGGTEPQHL 859 Query: 886 DQAIAGVASFL 896 D A+A ++ Sbjct: 860 DTALAFAKQWI 870 >gi|315122762|ref|YP_004063251.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496164|gb|ADR52763.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 906 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 661/901 (73%), Positives = 776/901 (86%), Gaps = 4/901 (0%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M N+ SIR TFL+FFQK H++L SSSLIP NDPTLMFTN+GMV FKNIFT QEK Y+ Sbjct: 1 MRNLGSIRKTFLDFFQKREHKILDSSSLIPHNDPTLMFTNAGMVQFKNIFTSQEKRSYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKCVRAGGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKERAI+LAW+LLTKEFD+ Sbjct: 61 AATVQKCVRAGGKHNDLDNVGRTTRHHTFFEMLGNFSFGDYFKERAIKLAWELLTKEFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RR+ +TVYD DEEAF LWKKISGL ++KIIR+ DNFWSMA+TGPCGPCSEIFFDQG Sbjct: 121 DCRRIVVTVYDGDEEAFNLWKKISGLPSNKIIRVAGKDNFWSMADTGPCGPCSEIFFDQG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E GGLPGS+E G+RY+EIWNLVFMQFEQ++++ER ILP MSIDTGMGLER++ VLQ K Sbjct: 181 EGFLGGLPGSAEAGDRYLEIWNLVFMQFEQKSQKERCILPSMSIDTGMGLERISAVLQGK 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 T+NYDIDLFK LIQASEQ+TG+KY+G++I+NHRVIVDHLRSSSFLIADGILP NEGRGYV Sbjct: 241 TDNYDIDLFKTLIQASEQITGVKYKGDDIINHRVIVDHLRSSSFLIADGILPTNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAMCYARLLGY +PLMM L P LC+EMGSAYPELIQA+LLIEETL+ ED RF K Sbjct: 301 LRRIMRRAMCYARLLGYEDPLMMRLFPVLCSEMGSAYPELIQAQLLIEETLKVEDMRFSK 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD+G+ LLD V S L K+ IL+G VAFKLYDTHGLPLDIMQDIL ARGL G+D+ SF Q Sbjct: 361 TLDKGIYLLDEVSSSLEKNAILDGSVAFKLYDTHGLPLDIMQDILWARGLGGVDVASFKQ 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK----VL 476 +LEEQRS+AR+H LGLG TEKIWFSLKEKYG TQF+GY++ GSK + D K L Sbjct: 421 SLEEQRSKARSHCLGLGEKITEKIWFSLKEKYGTTQFVGYNIHHGSKVIAGDEKKGDYSL 480 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 QKP +D T G+ +IVKAIV Q IV+ A +GQKVEV+FDQTPFYAE+GGQ+GDTG A+G Sbjct: 481 SQKPSVDFTQGIPAIVKAIVLQDSIVDVARAGQKVEVLFDQTPFYAESGGQVGDTGIAVG 540 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ LQITDVQKK GIFVHHA +E G+LRTEM ++LTI+YQ+RRQLSINHSATHLLH A Sbjct: 541 EGVSLQITDVQKKVGGIFVHHATIEHGVLRTEMPIILTINYQDRRQLSINHSATHLLHAA 600 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L TILG HVSQ GS I P+ LRFD+ HSKPIT E+K I+D++ND+IAQN ++TRIMN Sbjct: 601 LRTILGPHVSQKGSHIIPERLRFDIVHSKPITREEIKLIQDHINDVIAQNYSIITRIMNI 660 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DAIASG++AL G KY+D+VRVVS+E +DG V++S LCGGTHVSSTGEIML++IVSES++ Sbjct: 661 DDAIASGSSALFGKKYSDKVRVVSIESDDGRVYASELCGGTHVSSTGEIMLVHIVSESAV 720 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA++GQRARS+L+ QDEK++SLASFLKV NVV RVEEIWEE R+L LI+AK Sbjct: 721 SAGIRRIEAVSGQRARSYLVEQDEKVRSLASFLKVQPSNVVKRVEEIWEERRELHLINAK 780 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 KL+LNV+DLSCH IA+VNFMSH+I + D KELK ++D LQKKI+SGIIML+G+SKEKKA Sbjct: 781 HKLKLNVDDLSCHTIANVNFMSHVIPDADFKELKGLIDMLQKKIKSGIIMLIGVSKEKKA 840 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 SV+I VT+DL+DRFNA++L RL+AKVLGG GGGGRP+MAQSGGP+GNK DQ+IA + SFL Sbjct: 841 SVVIAVTQDLIDRFNAINLVRLAAKVLGGSGGGGRPNMAQSGGPDGNKVDQSIANIVSFL 900 Query: 897 K 897 K Sbjct: 901 K 901 >gi|89075063|ref|ZP_01161504.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34] gi|89049150|gb|EAR54715.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34] Length = 874 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 380/909 (41%), Positives = 536/909 (58%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIGYAWEFLTSVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 ADRLVVTVYETDDEAFDIWNKEIGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQVDGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A ++Q +NY+ID+F+ LI+ + +V G + + + RV+ DH+RS ++LI+DG++P Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFED--LSNQSLRVVADHIRSCAYLISDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + L+E+ L+ Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAEGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E++ FG+TLDRGL +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG Sbjct: 361 IEEDNFGRTLDRGLTILNEALDKLD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+EEQR RAR +G + + + T F GY G Sbjct: 419 IDEDGFEAAMEEQRQRAR------DAGNFGVDYNNAIKVDAETVFCGYSATDG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + A+ + G V+ +G++ VV TPFYAE+GGQ GD+G Sbjct: 466 ----------------ESEIVALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + D QK H V G L L ++D R +S+NHSATHL Sbjct: 510 ILTAEAVLFNVDDTQKFGA-AIGHKGQVAEGSLTVGQKLTASVDSARRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL TILG HVSQ GS + DGLRFD ++ + + +L+++E VND I N + T Sbjct: 569 MHAALRTILGEHVSQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGG H + TG+I L I+S Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG + + +D L A +K +VV +VE + ++L+ Sbjct: 684 ESGIAAGIRRIEAVTGAASIEEMHNEDVMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +I V + ++ D+K L+ ++D L+ ++ SG+++L Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +S + K ++ VT+DL+ + A +L L A+ + GG GGGRP MAQ+GG + Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861 Query: 888 AIAGVASFL 896 A+ VA +L Sbjct: 862 ALETVAPWL 870 >gi|260460847|ref|ZP_05809097.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] gi|259033424|gb|EEW34685.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] Length = 888 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 470/910 (51%), Positives = 633/910 (69%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F++ GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRREGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L Sbjct: 61 ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI + G + + ++RVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 VESVFETDLFRHLIDVASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL L ++L+G+ AFKLYDT+G PLD+ QD L + +D+ F Sbjct: 361 KTLVRGLGLLSEATETLTAGDMLDGETAFKLYDTYGFPLDLTQDALR-QRSISVDLAGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ AR H G G TE +WFS++EK GAT+F+GY+ Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREKTGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+A+V+ G+ V+ A G V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 462 -----TEQAEGLVQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I+D QKKA+G+FVH V G ++ ++ L +D+ R +L NHSATHL+H AL Sbjct: 517 SIEISDTQKKADGLFVHLGTVASGTVKVGAAVELKVDHARRSRLRANHSATHLIHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFD++H+KPI+ +L+ +E N+I+ QN PV TR+++ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISPEDLEEVERMANEIVVQNGPVTTRLISVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV +TG+I L+ +VS+S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR HL QD +LK+ A+ LK+S +V RVE + EE +KL+ Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756 Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + +A V F+ ++S V K+LK + DA + + SG+++ Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKMVSGVSPKDLKPLADAGKTSLGSGVVVF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG ++ KASV++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+ +KA Sbjct: 817 VGAGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAGD 876 Query: 888 AIAGVASFLK 897 AIA V + L+ Sbjct: 877 AIAAVRAALE 886 >gi|254719259|ref|ZP_05181070.1| alanyl-tRNA synthetase [Brucella sp. 83/13] gi|265984258|ref|ZP_06096993.1| alanyl-tRNA synthetase [Brucella sp. 83/13] gi|306838009|ref|ZP_07470867.1| alanyl-tRNA synthetase [Brucella sp. NF 2653] gi|264662850|gb|EEZ33111.1| alanyl-tRNA synthetase [Brucella sp. 83/13] gi|306406933|gb|EFM63154.1| alanyl-tRNA synthetase [Brucella sp. NF 2653] Length = 885 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 475/893 (53%), Positives = 622/893 (69%), Gaps = 36/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+ Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEDF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V +G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + +L + + + VNF+ I++ V +LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVLPHDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGTGGGGRPDMAQAGGPD 869 >gi|116048827|ref|YP_792373.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] gi|122257933|sp|Q02I63|SYA_PSEAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115584048|gb|ABJ10063.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] Length = 874 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 399/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +E QR RARA S + SL + G T+F+GY + G+ Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+ Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K +HH +V RG L ++ +D R+ ++NHSATH Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + + +I ++ + +D K L +++D L+ K+ +I+ Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + K ++ VT+DL + A +L + +A +GG G GGRP MAQ GG N K D Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTNAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|91976212|ref|YP_568871.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] gi|123735560|sp|Q13AB9|SYA_RHOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91682668|gb|ABE38970.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] Length = 891 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 466/901 (51%), Positives = 612/901 (67%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVYSEDDEAFGLWKKIAGLPESKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIFGGPPGSLEEDGDRFIEIWNLVFMQFEQVAPGNRTPLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF+ LI+A ++TG +G + RVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYEIDLFQALIRAIAELTGADPQGEQKGSLRVIADHLRAASFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG EPLM L+ AL EMG AYPEL++A+ +IEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAEAMIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L K ++ +GD AF LYDT+G PLD+ QD L RG +DI SF Sbjct: 361 KTLERGLTILDEKSGSLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRG-ISVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WF L++K GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLRDKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G+ VE +G +V +QTPFYAE+GGQ+GDTG G+G+ Sbjct: 462 -----TETAEGVVTALVKDGKEVEALKAGDAGAIVLNQTPFYAESGGQVGDTGVLTGEGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD KKA +FVH VE G ++ E +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGTVKPEAALALEVDHSRRSSIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITQDELRRVEDIANDIVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ + E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKASREHGSNAFGWSVELCGGTHVRRTGDIGLISVTGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG+ AR K+ A+ L+ + ++ R+ + +E +KL+ Sbjct: 697 SAVASGVRRIEALTGRHARQSANAAMATAKAAAAELRTTLDDMPARIASLMDERKKLERE 756 Query: 774 HAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + + +L + + V ++ + ++ K+LKS++D +K++ SG Sbjct: 757 LSDARKKLAMGGSGAAGAADGGADVRDVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+ Sbjct: 817 VIALVAKSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGS 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|237809468|ref|YP_002893908.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187] gi|237501729|gb|ACQ94322.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187] Length = 874 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 387/910 (42%), Positives = 541/910 (59%), Gaps = 53/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IRT FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y Sbjct: 3 MTTSEIRTAFLEYFRSQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGGDIRPYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AWD LTK L Sbjct: 63 TTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWDFLTKVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 Q +L +TVY D+EA+ +W G+SAD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 QEKLLVTVYATDDEAYGIWANEIGVSADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+R+IEIWN+VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 183 IFYDHGADIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTLEPLPKPSVDTGMGIERV 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+FK LIQ + ++ G+ + RVI DH+RS SFLI+DG++P+ Sbjct: 243 SAIMQGVHSNYEIDIFKTLIQNAAKIVGVTD--LENKSLRVIADHIRSCSFLISDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + R LG T+ L+ AL MG AYPEL + ++E L+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDTFFYQLVGALVALMGEAYPELKSQQPVVERVLKL 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TLDRGL LL+ L LG + G V FKLYDT+G P D+ D++ RG I Sbjct: 361 EEEQFVRTLDRGLSLLEEELVRLGDVREIPGSVVFKLYDTYGFPADLTADVVRDRGYT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F Q +E+QR RA+ + + + + F GY+ Sbjct: 420 DEAAFQQEMEKQRERAK------DASHFAVDYNKQLKIEQTSDFCGYERT---------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++ + AI ++V G + +V + TPFYAE+GGQ+GD G Sbjct: 464 -------------IANTTITAIYLADQLVSTLKDGDQALIVLENTPFYAESGGQMGDAGL 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +TD K + I VE+G +T ++ +D R +++HSATHLL Sbjct: 511 LRVGDALFAVTDTHKIGQAIVHK-GFVEQGSFKTGDTVEAIVDNTRRNATALHHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL LG HV+Q GS + PD LRFD +H + I A L+ IE +VN I +N+ + T++ Sbjct: 570 HAALRNALGEHVAQKGSQVGPDRLRFDFSHFEAINPAALRQIEQSVNAEIRKNVLIDTQL 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ +DA SGA AL G KY D VRVV + G S+ LCGGTH TG+I I+SE Sbjct: 630 MSLDDAKTSGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHAKHTGDIGFFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + + AG+RRIEA+ G+ A +H+ E+L AS +K +VV ++ ++ E R L+ Sbjct: 685 NGVAAGVRRIEAVAGEAALAHIHQLGEQLDEAASIVKADALSVVSKIRQMQERSRLLERE 744 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + +I + + VD+K L++ MD L+ ++QS ++ML+ Sbjct: 745 IETLKAKLASQAGNDLLSQIMQINGQQVLVAQVEGVDAKSLRTTMDDLKNRLQS-VVMLL 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT DL + A +L L A+ + GG GGGRP MAQ+GG + A Sbjct: 804 AAVNDGKVSLIAGVTADLTSKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDATALPGA 862 Query: 889 IAGVASFLKK 898 + V S+L++ Sbjct: 863 LKSVQSWLEE 872 >gi|313105787|ref|ZP_07792050.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016] gi|310878552|gb|EFQ37146.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016] Length = 874 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 399/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +E QR RARA S + SL + G T+F+GY + G+ Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+ Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K +HH +V RG L ++ +D R+ ++NHSATH Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + + +I ++ + +D K L +++D L+ K+ +I+ Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + K ++ VT+DL + A +L + +A +GG G GGRP MAQ GG N K D Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTNAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|15596100|ref|NP_249594.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|107100361|ref|ZP_01364279.1| hypothetical protein PaerPA_01001386 [Pseudomonas aeruginosa PACS2] gi|218893128|ref|YP_002441997.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] gi|20532264|sp|Q9I553|SYA_PSEAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|9946804|gb|AAG04292.1|AE004524_9 alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|218773356|emb|CAW29168.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] Length = 874 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 398/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +E QR RARA S + SL + G T+F+GY + G+ Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+ Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K +HH +V RG L ++ +D R+ ++NHSATH Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGGAVKAEVDASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + + +I ++ + +D K L +++D L+ K+ +I+ Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + K ++ VT+DL + A +L + +A +GG G GGRP MAQ GG + K D Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|296390743|ref|ZP_06880218.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAb1] Length = 874 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 398/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +E QR RARA S + SL + G T+F+GY + G+ Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+ Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K +HH +V RG L ++ +D R+ ++NHSATH Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + + +I ++ + +D K L +++D L+ K+ +I+ Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + K ++ VT+DL + A +L + +A +GG G GGRP MAQ GG + K D Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|88798293|ref|ZP_01113879.1| Alanyl-tRNA synthetase [Reinekea sp. MED297] gi|88779069|gb|EAR10258.1| Alanyl-tRNA synthetase [Reinekea sp. MED297] Length = 868 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 371/903 (41%), Positives = 539/903 (59%), Gaps = 45/903 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FLEFF+K+ H ++P+ SL+P +DPTL+FTN+GM FK++F G ++ Y Sbjct: 1 MKTSEIRRRFLEFFEKHEHRVVPAGSLVPGDDPTLLFTNAGMNQFKDVFLGTDRRDYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+E L Sbjct: 61 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++TVY +D+EA +W G+ +++ R+ DNFW M +TGPCGPCSEIF+D GE Sbjct: 121 KEKLWVTVYQDDDEAADIWINDIGVDPNRLSRLGDKDNFWMMGDTGPCGPCSEIFYDHGE 180 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS ++ +RYIEIWNLVFMQF+ R LPK S+DTGMGLER+A +LQ Sbjct: 181 EVPGGPPGSPDDDLDRYIEIWNLVFMQFDTLADGSRVPLPKPSVDTGMGLERLAAILQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+A+ +VTG + RVI DH+RS++FLIADG++P+NEGRGYV Sbjct: 241 HSNYEIDLFQALIRAAMRVTGCTDI--ENRSLRVIADHIRSTAFLIADGVIPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + + L+ L +MG AYPEL + + + L+ E+E+F + Sbjct: 299 LRRIIRRAVRHGYKLGCQDLFLFKLVDDLVDQMGEAYPELAEQADHVRKVLKIEEEQFAR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ +L+ ++ + ++ G++ FKLYDT+G P D+ D+ +GL ID F Sbjct: 359 TLENGMTILEQGIADIE-GNVIPGELVFKLYDTYGFPADLTADVAREKGL-DIDQDGFES 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQR RA++ + + GAT F+GY+ L Sbjct: 417 RMAEQRKRAQSANKFKMDRDLD------LALDGATNFLGYETL----------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V +++ + V + G + V+ DQTPFYAE+GGQ GD G + Sbjct: 454 ------AAEGQVIRLLRGEDTVSQLSVGDEGVVILDQTPFYAESGGQAGDRGVITTEAAS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 L++ D QK F+H V G+L+T+ + + R + +HSATHLLH AL + Sbjct: 508 LEVIDCQKHQGH-FLHQVRVTDGVLKTDDRVAAKVQRNERENTARHHSATHLLHAALREV 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+HV Q GS +T D LRFD +H + +T+ EL IE VN I N V T +M+ + A Sbjct: 567 LGTHVQQRGSLVTHDKLRFDFSHLEAVTAEELVQIETLVNHHIMANAEVTTELMDIDSAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA AL G KY+D+VRV+++ +S LCGGTHV TG+I L IV+ES I AGI Sbjct: 627 AAGAVALFGEKYDDQVRVLTMGE---DAYSKELCGGTHVQRTGDIGLFRIVAESGIAAGI 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RR+EA+ G A + + +D + L+ K S + +V++ + L+ +K K + Sbjct: 684 RRVEAVAGPYALAEIRQRDAVVNRLSGQFKCSVDQLESKVQQAVAHSKDLEKELSKLKDK 743 Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + V ++ + VD+K L+S MD ++ K+ S +I++V + E K Sbjct: 744 LASAAAGDLTSEVKDVQGVKVLAVRLDGVDAKSLRSTMDQMKSKLGSAVILIVAVDGE-K 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 + VT+DL F A +L + L G GGG+P MA +GG + NK A+ V ++ Sbjct: 803 VQLAAGVTKDLTATFKAGNLIKDVGA-LMGAKGGGKPDMAMAGGGDINKIPDALQAVPTW 861 Query: 896 LKK 898 +++ Sbjct: 862 VEQ 864 >gi|254448289|ref|ZP_05061751.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015] gi|198262156|gb|EDY86439.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015] Length = 868 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 374/904 (41%), Positives = 548/904 (60%), Gaps = 45/904 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ ++IR FL++F GH ++PSSSL+P D TL+FTN+GMVPFK++F GQE+ Y Sbjct: 1 MTSSANIRKQFLDYFASKGHAVVPSSSLVPAGDDTLLFTNAGMVPFKHVFLGQEQRDYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W+ LT+ L Sbjct: 61 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYGWEFLTQVVGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV++ED+EA +W K G+ D++ RI DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKEKLWVTVFEEDDEAADIWLKEIGVDPDRLSRIGAKDNFWQMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG P E+G+RYIE+WNLVFMQ+ + LPK S+DTGMGLER+A +LQ Sbjct: 181 EHIWGGPPGTPEEDGDRYIEVWNLVFMQYNRSQDGTLTPLPKPSVDTGMGLERLAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI A+ + G++ + I + VI DH+RS +FL+ DG+LP+NEGRGY Sbjct: 241 VHSNYEIDLFQALIHAAGKAVGVEKPSHEISSLNVIADHIRSCAFLVVDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA + LG +P L+ L +MG AYPEL +++ +E+ L+ E+ERF Sbjct: 301 VLRRIIRRACRHGYKLGQNQPFFYTLVEELVAQMGEAYPELSESQARVEQVLKKEEERFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL +G+ +L+ + L + I G+ F+LYDT+G P+D+ DI L ID+ + Sbjct: 361 ETLSQGMGILNQAIDSLDGERI-PGETVFQLYDTYGFPVDLTADIAREHEL-DIDLEGYE 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +EEQR RARA S E ++F GY+ L Sbjct: 419 ACMEEQRQRARAASQFG------ADLSERIEFSEESEFTGYEHLNH-------------- 458 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +++ ++ G VE GQ+ VV + TPFYAE+GGQ+GD G + +G+ Sbjct: 459 ---------EAVISHLIVDGSEVERIAEGQQGMVVLNSTPFYAESGGQVGDRGVLVSEGV 509 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ D QK+ VH +E G L +++ +D RR +NHSATHL+H AL Sbjct: 510 RFRVDDTQKQGG-AIVHIGHLECGELSLNDNILAEVDMAKRRATELNHSATHLMHWALRE 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + + LRFD +H +P+T +EL +ED VN I +N TR+M EDA Sbjct: 569 VLGDHVQQKGSLVNEEYLRFDFSHFQPMTDSELAQVEDLVNAEILKNRATQTRLMTMEDA 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA AL G KY D VRV+++ G HS LCGGTHV TG+I L ++ E + +G Sbjct: 629 KAAGAMALFGEKYGDEVRVLNI-----GDHSIELCGGTHVDRTGDIGLFKLIGEGGVASG 683 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RR+EAITG A+ + D+ ++ LA+ L+ +G+V +VE++ ++ R+L+ + K Sbjct: 684 VRRVEAITGIAAQQWVRQTDDTVRQLAARLRTDRGSVADKVEQLADKNRQLEKELERLKS 743 Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + +I + ++ + D+K L+S +D L+ K+ + I+L + Sbjct: 744 KLASQAGGDIASQAVEIDGIKVLATALEGADTKVLRSTLDQLKDKLGAAAIVLGAADGD- 802 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++ VT+ R A +L A +GG G GGRP MAQ+GG + + A+A V + Sbjct: 803 KVRLVAGVTKSETSRIKAGELVNHVAVQVGGRG-GGRPDMAQAGGSDPAALEGALASVET 861 Query: 895 FLKK 898 ++++ Sbjct: 862 WVRE 865 >gi|167623167|ref|YP_001673461.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] gi|205830204|sp|B0TK15|SYA_SHEHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167353189|gb|ABZ75802.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] Length = 874 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 384/907 (42%), Positives = 549/907 (60%), Gaps = 54/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + + G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAAILGVTD--LENKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + + ++E++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGDAAKGLQETQAIVEKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALNELT-TKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQR RA+A G + + + + F GY L Sbjct: 420 EAGFEAAMAEQRKRAQAA------GQFDTDYNEGLKIDEQSSFTGYTEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI + GE E +G + +V D TPFY E+GGQ GD G Sbjct: 463 ------------NNQATVTAIFKSGEAAETITAGDEAVIVLDNTPFYGESGGQSGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I DGI + D QK H V G ++ SL +D + R + +NHS THLLH Sbjct: 511 IADGIEFTVIDTQKYG-QAIGHIGRVVTGEIKAGQSLTANVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN I +N + +M Sbjct: 570 AALRQVLGAHVSQKGSLVDPERLRFDFSHFEGVKANELKEVEELVNTQIRRNHELTAEVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A GA AL G KY+ VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAATLLKGDSASVVAKLKAQLDKTKQLEKEL 744 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K +L ++ V + + VD+ L+ + D L++K+QSGI++L Sbjct: 745 SQLKDKLAAATSADLAGEAVEVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA- 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ E K ++++ VT+DL + A +L A + GG GGGRP MAQ+GG D A+ Sbjct: 804 IAGEDKVNLIVGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLDGAL 862 Query: 890 AGVASFL 896 V ++ Sbjct: 863 EQVIPWI 869 >gi|320173452|gb|EFW48651.1| Alanyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112] Length = 876 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K + ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVEIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|283835574|ref|ZP_06355315.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220] gi|291068784|gb|EFE06893.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220] Length = 875 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 394/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI++ +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRSLIESVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVV 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVEVMGSAGDELKRQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ GA++F GY+ L Sbjct: 420 -VDEEGFEAAMEEQRRRAREA------SGFGADYNAMIRVDGASEFKGYEHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFAFAVSDTQKYG-QAIGHIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H++ + AE++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKVLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L IV Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIHTVHAQSDRLNDIAQLLKGDSQNIGDKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + +++V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|114775361|ref|ZP_01450929.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] gi|114553472|gb|EAU55853.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] Length = 871 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 399/903 (44%), Positives = 549/903 (60%), Gaps = 42/903 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL++F GH ++ SSSL+P DPTLMFTN+GMV FK++F G E Y+ Sbjct: 1 MRTSEIRKKFLDYFAAEGHTIVDSSSLVPHGDPTLMFTNAGMVQFKHVFLGNESRPYRTA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT E LD Sbjct: 61 TTSQKCVRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKHDAIRYAWQFLTGELKLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ITV++ED+EA+ +W K G+ AD+I RI DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PARLFITVFEEDDEAYDIWTKEVGIPADRIARIGAKDNFWSMGDTGPCGPCSEIFYDHGA 180 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PG++ E+G+RYIEIWNLVFMQ+++ LP S+DTGMGLER+A V+Q Sbjct: 181 DVWGGPPGTAEEDGDRYIEIWNLVFMQYDRDEDGTLTPLPHPSVDTGMGLERVAAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNYDIDLF LI A+ +TG++ + + V+ RV+ DHLRS SFL+ADG+LP+NEGRG Sbjct: 241 HNNYDIDLFARLIDAAGALTGVRMGDDPVSDVSLRVLADHLRSVSFLLADGVLPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 +VLRRI+RRA + RLLG E + L+ AL EMG + EL +++ IE+ +R E+ERF Sbjct: 301 FVLRRILRRACRHGRLLGMYEAFIYKLVDALVAEMGDHFAELKESQGNIEQVIRIEEERF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTLD+GL L++ + GK + G+ F LYDT G P D+ DIL +D+ F Sbjct: 361 IKTLDKGLKLVEQAAASAGKGGTIPGETLFALYDTFGFPTDLTADILKGTD-ISLDMDGF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + +EEQR+RARA G G K F L+E +G T+F+GYD L Sbjct: 420 ERCMEEQRTRARAAWGGSGESALPKALFELREHHGPTEFLGYDTLSS------------- 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ +++ GE V+ +G++ ++ +QTPFYAE+GGQ GDTG Sbjct: 467 ----------EGVITGLIRDGEAVDTLHAGEEGWLIANQTPFYAESGGQAGDTGLITIGD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++D +K +FVH V +G + +D R + NH+ATHL+H L Sbjct: 517 AIFEVSDTRKMLSDLFVHTGKVVKGSFEAGSVVHFAVDEDRRAAIRRNHTATHLMHAVLR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + LRFD H KP++ E K IE VN I N PV T++M++++ Sbjct: 577 KVLGEHVKQAGSLVNEQRLRFDFNHFKPVSEEERKVIEAEVNAAIWANDPVETKLMSQDE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ASGA AL G KY D VRVVS S+ LCGGTHVS+TG+I IVSE+ I A Sbjct: 637 AVASGAMALFGEKYGDEVRVVSAG------FSTELCGGTHVSATGDIGPFRIVSEAGIAA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A L+ L+ A LKV V + + + + + Sbjct: 691 GVRRIEAVTGSAAYQSLVADIHTLEEAAGHLKVRPFEAADAVVTLQGKLKDAEKELTSLR 750 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + + L ++ V ++ +S V K+++ MD + K++SG I++ G+ Sbjct: 751 AKQSTGLLDDLIKQAVEVNGVKLLAVEVSGV--KDMRDFMDKAKGKLKSG-ILVFGMKNG 807 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++ VT+DLL ++A ++ R A ++ GG GGG+P MA +GG +K QA+AGVA Sbjct: 808 PKVQLIAGVTQDLLGSYHAGNIVREVA-MICGGKGGGKPDMAMAGGTEPDKLKQALAGVA 866 Query: 894 SFL 896 + + Sbjct: 867 ALI 869 >gi|85712448|ref|ZP_01043497.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145] gi|85693726|gb|EAQ31675.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145] Length = 867 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 373/902 (41%), Positives = 546/902 (60%), Gaps = 48/902 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR F++FF++ GH+ +PS+S+IP NDPTL+FTN+GMVPFK++F G +K Y T Sbjct: 4 TSAEIREKFIQFFEQRGHQRVPSASMIPANDPTLLFTNAGMVPFKDVFLGTDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+E L Sbjct: 64 SAQRCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKTEAIEFAWHFLTQELQLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L++TV++ED+EA+ +W K G+ D+I RI DNFWSM +TGPCGPCSE+F+D G Sbjct: 124 EKLWVTVFEEDDEAYDIWAKHIGVPEDRISRIGVKDNFWSMGDTGPCGPCSEVFYDHGPE 183 Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GG P E+G+RYIEIWNLVFMQ+ +Q LP SIDTGMGLER+A +LQ Sbjct: 184 VWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTMEPLPNPSIDTGMGLERIAAILQGVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+ID F+ LI+ S + G+ + + RVI DH+RS SFLIADG++P+NEGRGYVL Sbjct: 244 SNYEIDTFQALIKRSADIIGVSD--LSSKSLRVIADHIRSCSFLIADGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LLG + L+ L MG AYPEL++ + +IE+ L+ E+++F KT Sbjct: 302 RRIIRRAVRHGNLLGAKQTFFYQLVDELVKLMGEAYPELVEKRHIIEDALKREEQQFEKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL +L+ + L LNG+V FKLYDT+G P+D+ DI ID FN A Sbjct: 362 LERGLAILNDEIKQLS-GNTLNGEVVFKLYDTYGFPMDLTADIARE-NELVIDEEGFNAA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ QR RA+ S + + + + F GY Sbjct: 420 MQAQRERAQKASQFG------VDYNAQVKATTKSVFDGYTE------------------- 454 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + + V + +G VE +GQ+ VV TPFYAE+GGQ+GDTG + + R Sbjct: 455 ----DKAQTTVVELFHEGTAVESLEAGQQGVVVLANTPFYAESGGQVGDTGVLLANQGRF 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++TD Q + HH + ++ ++ ID + R + NHSATHLLH AL IL Sbjct: 511 EVTDTQYIGK-AIAHHGQADC-TIKLGDAVTAEIDSERRANIRRNHSATHLLHAALRDIL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS + + +RFD H +P+T A++ +E VN+ I +N+ + T++MN ++A Sbjct: 569 GDHVQQKGSLVEAERMRFDFAHFEPLTKAQITELERVVNEQIRKNVRLTTQVMNIDEAKK 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA AL G KY+D VRVV + G S LCGGTHV++TG+I L I E+ I +G+R Sbjct: 629 AGAMALFGEKYDDDVRVVRM-----GEFSMELCGGTHVAATGDIGLFRITHETGIASGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 R+E +TG A + Q L L + K + ++G+V+++ +YR+L+ + + +L Sbjct: 684 RLEVVTGAAAFEFMANQQAILNQLTADFKTDETGLLGKVDQLQSKYRELERKAEQLQQKL 743 Query: 782 NVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + ++ + + + ++K L+ ++D L+ ++ SG+++L ++ K Sbjct: 744 AQQAGGGLVQQAVEMNGHKVIVAQLEDTEAKALRGIVDDLKNQLGSGVVLLA-TAQGSKV 802 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 S++ VT+DL A DL +A V+ GG GGGRP MAQ+GG N +A+A S+L Sbjct: 803 SLIAGVTKDLTSIVKAGDLVNQAANVV-GGKGGGRPDMAQAGGSNPEHLSEALATATSWL 861 Query: 897 KK 898 ++ Sbjct: 862 EQ 863 >gi|83719349|ref|YP_443176.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264] gi|167620352|ref|ZP_02388983.1| alanyl-tRNA synthetase [Burkholderia thailandensis Bt4] gi|257139409|ref|ZP_05587671.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264] gi|123536505|sp|Q2SV73|SYA_BURTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83653174|gb|ABC37237.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264] Length = 874 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G+L+ ++ ID R + + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860 Query: 887 QAIAGVASFLKK 898 A+AGV ++++ Sbjct: 861 AALAGVKGWVEE 872 >gi|322831421|ref|YP_004211448.1| alanyl-tRNA synthetase [Rahnella sp. Y9602] gi|321166622|gb|ADW72321.1| alanyl-tRNA synthetase [Rahnella sp. Y9602] Length = 875 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 390/911 (42%), Positives = 549/911 (60%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH ++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHNIVSSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRDYNRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFEIWEKEVGVPKERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ V+Q +NYDIDLF+ LI A +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVMQHVNSNYDIDLFQKLIAAVAEVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAQDTFFYKLVAPLIEVMGPAATELKEQQAMVEQLL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G++AF+LYDT G PLD+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELAALK-GDTLDGEIAFRLYDTFGFPLDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A++ QR RAR S + S+ G TQF GY+ L+ Sbjct: 420 -VDEAGFEKAMDVQRRRARE------SSGFSADYNSMVRVDGVTQFSGYEHLQRH----- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ G+ V + +G VV D TPFY E+GGQ+GD Sbjct: 468 ------------------SKVVALFVDGQPVNDIQAGVNAIVVLDDTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++D QK + H + G L S+ +D R ++ +NHSATH Sbjct: 510 GILKTTTGVFSVSDTQKYGK-AIGHQGALSAGKLSIGDSVEAEVDVARRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + + LRFD +H + + E++ +ED VN I +NLP+ T Sbjct: 569 LLHAALRQVLGKHVAQKGSLVNDNYLRFDFSHFEAMKPEEIRQVEDLVNAQIRRNLPIQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ ++A GA AL G KY D VRV+S+ G S+ LCGGTH S TG+I L I Sbjct: 629 TIMDLDEAKEKGAMALFGEKYEDSVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIE ITG+ A + L Q + L+ +A +K ++ ++ + E R L+ Sbjct: 684 SESGTAAGVRRIEGITGENAINALHQQSDLLQDVAHLVKGDVNSITDKIRSLIERSRTLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + ++ V + V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQVKGQQAAQESASLSSQAKEVKGVKLLVRQFDNVEPKMLRTMVDDLKNQLGSVIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L I+ + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATIA-DDKVSLIAGVTKDLTDRVKAGELIASVAQQV-GGKGGGRPDMAQAGGSDVQALP 861 Query: 887 QAIAGVASFLK 897 A+A V ++++ Sbjct: 862 AALATVEAWVE 872 >gi|85708967|ref|ZP_01040033.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1] gi|85690501|gb|EAQ30504.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1] Length = 887 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 445/910 (48%), Positives = 593/910 (65%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL+FF H + S+ L+P NDPTLMF N+GMVPFKN+FTG E P Sbjct: 1 MTSTNDIRRSFLDFFASEDHVEVQSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPGPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILNAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LW+KISGL ++IIRI T DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 APEKLTATVYHTDDEAFDLWRKISGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E IPGG P E+G+R+IEIWNLVFMQF+Q R LP SIDTGMGLER+A V+Q Sbjct: 181 EHIPGGPPGSPDEDGDRFIEIWNLVFMQFDQAADGTRRDLPSPSIDTGMGLERIAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI ASE +T + G N +HRVI DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDTFKALIAASENLTEVPASGENTASHRVIADHLRSTSFLMADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +EPLM L+PAL +EMG AYP L + + LIEE L E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVSEMGQAYPGLQRGQSLIEEVLLREETQFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD+GL LLD + + L+G+ AFKLYDT+G P D+ +D L ARG +D F+ Sbjct: 361 KTLDKGLKLLDEATGSMSEGGELDGETAFKLYDTYGFPYDLTEDALRARG-ISVDRGGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ Q++ ARA G G +++IWF + E+ GAT+F GY G Sbjct: 420 EAMARQKAAARAAWKGSGEAASDEIWFDIAEREGATEFTGYSTTSG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A+V+ G V+ A +G +V V+ +QTPFY E+GGQ GDTG Sbjct: 466 ---------EGTVVALVKDGAEVDSASAGDEVVVLTNQTPFYGESGGQTGDTGTISTPTG 516 Query: 540 R-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +TD K + H A + G ++ ++ L +D + R Q+ NHSATHL+H AL Sbjct: 517 LAADVTDTSKPLGRLHAHQARITAGKVKVGDNVQLDVDAERRTQIRANHSATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS ++ + LRFD +H KP+++ ++ +IED VN I N PV TR+M+ +D Sbjct: 577 NQLGDHVTQKGSLVSQERLRFDFSHPKPLSAEDIVAIEDEVNAEILANEPVGTRLMSPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+ +GA AL G KY D VRV+S+ G +S LCGGTHVS+TG+I L IVSE ++ Sbjct: 637 AVEAGALALFGEKYGDEVRVLSMGRSGGSGRNYSVELCGGTHVSATGDIGLFRIVSEGAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+TG AR+ L+ ++E LKS+A ++ + V RV + +E ++L+ A+ Sbjct: 697 SSGVRRIEALTGDAARNWLVAREEALKSVAGAIRATPEEVPARVAALLDERKRLEKELAE 756 Query: 777 RKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K L + ++A V F ++ ++ KEL+ ++D + ++ +G+ + Sbjct: 757 AKKALALGGGGSGGGPAASADEQVAGVAFSGQVLEGLNPKELRPLLDEAKARLGTGVAAI 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V + + KAS+ VT+DL D+F+AVDL R + LGG GGGGRP MAQ GGP+G+KA + Sbjct: 817 VAV-NDGKASIAAAVTDDLTDKFSAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGSKAAE 875 Query: 888 AIAGVASFLK 897 AIA V S L+ Sbjct: 876 AIASVKSVLE 885 >gi|237729651|ref|ZP_04560132.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2] gi|226908257|gb|EEH94175.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2] Length = 875 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI++ +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRSLIESVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVV 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + ++++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVDVMGSAGEELKRQQVMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ GA++F GY+ L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDGASEFKGYEHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFAFAVSDTQKYG-QAIGHIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H++ + AE++++ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKLLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L IV Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIQTVHAESDRLSDVAQLLKGDSQNIGDKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + +++V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|16126768|ref|NP_421332.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15] gi|221235548|ref|YP_002517985.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000] gi|20532261|sp|Q9A5C1|SYA_CAUCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13424088|gb|AAK24500.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15] gi|220964721|gb|ACL96077.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000] Length = 880 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 448/904 (49%), Positives = 590/904 (65%), Gaps = 34/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F K H + PS+ L+P NDPTL+F N+GMVPFKN+FTG E P + Sbjct: 1 MPSLNEIRSTFLDYFGKADHAVTPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT EF L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILHAWTLLTAEFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA LWKKI+GL D+IIRI T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDDEAADLWKKIAGLGDDRIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG P E+G+R+IEIWNLVFMQFEQ ER LPK SIDTGMGLER+A VLQ Sbjct: 181 PHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGERISLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLFK LI AS ++TG+K EG +HRVI DHLRSSSFL+ADG+ P+NEGRGY Sbjct: 241 QHDNYDIDLFKALIAASVELTGVKAEGAQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +EPLM L P L EMG AYPEL +A+ LI ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGASEPLMHRLAPTLVREMGQAYPELRRAEALIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LLD ++L +L+G+ AFKLYDT+G PLD+ QD + A+GL +D +F+ Sbjct: 361 TTLGRGMGLLDEATANLAAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+++QR ARA+ G G WFS+KEK GAT F+GY+ Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFSIKEKAGATDFVGYETTE--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + +VKAIV G VE A +GQ VEV+ D+T FYAE+GGQ GDTG G Sbjct: 465 --------TTGVVKAIVVDGAEVESASAGQTVEVLLDRTSFYAESGGQAGDTGVIEAHGR 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK+A + VH + + + +V ++D R NHSA HL+H AL Sbjct: 517 ESRVLDTQKQAGELHVHRVELASDL-KVGDQVVASVDADRRNTTRSNHSAAHLVHAALHH 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P+T+ EL IE VN++I QN+P T+ M ++A Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTAEELDRIEAEVNEVIRQNVPAETKEMAPQEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ ++ +S LCGGTHV+ TG+I L IVSE + Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLADEAKAYSVELCGGTHVARTGDIALFKIVSEQGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ AR L+ Q K+LA K V RV+ + + ++L+ A+ Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVATRVDALIADRKRLEKELAE 755 Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + ++ ++ V KEL+ V + +K++ SG++ LVG S Sbjct: 756 AKKQLALGGGGAASGPEDVNGTALIARVLDGVGGKELRGVAEEFKKQLASGVVALVGTS- 814 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA+V + VT DL +F+A DLA+ + +GG G GG+ AQ G P+ +KA++ +A V Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKAEEGLAAV 874 Query: 893 ASFL 896 + L Sbjct: 875 KALL 878 >gi|319404395|emb|CBI77998.1| Alanyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498] Length = 887 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 479/910 (52%), Positives = 637/910 (70%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+ FL++F++NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNSIRSAFLDYFRRNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 Q +L +TVY D A +LW+KISGL +KIIRI TNDNFWSM +TGPCGPCSEIF+D G Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS +E+G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI AS+++TG+K G + +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFCKLIHASQEITGIKATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM LLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMKKLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ V L + + L+G+VAFKLYDT+G PLD+ QD L RG +DI +F Sbjct: 361 KTLERGLSLLNEVSIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRCRG-ISVDIDAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE IWFS+++K GAT+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A+V GEIV+ SGQ +V +QTPFYAE+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGVITALVCDGEIVDHISSGQDAMLVVNQTPFYAESGGQVGDSGVISGESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q++ +G+F+H V+ G + + L++D + RR++ NHSATHLLH AL Sbjct: 517 VFEVHDTQRRGDGVFIHIGEVKSGQAQISDCVELSVDSERRRKIRANHSATHLLHEALRC 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG H++Q GS ++P LRFD +H KPI+S ELK +ED NDI+ QN V TR+M +DA Sbjct: 577 ILGPHIAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVTTRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ S LCGGTHV TG+I L++IV ES Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPTELTRHWSIELCGGTHVQRTGDIGLIHIVGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +G+RRIEA+TG AR +L QD+++ +ASFLK S N+ R+ + ++ RK + Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756 Query: 775 A--KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ + LN L K I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NNTRKNVALNGGALQGRKEDITIINGISFMGGVLRNIAVRDLKALVDSGKKQIKSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +S++ K S ++ VT+DL++ NAVDL R+ + VLGG GGGGRP MAQ+GG G+KAD+ Sbjct: 817 ISVSEDGKGSAVVGVTDDLINMLNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876 Query: 888 AIAGVASFLK 897 AI + +FLK Sbjct: 877 AITALKAFLK 886 >gi|205830051|sp|B2IHX3|SYA_BEII9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 898 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 472/915 (51%), Positives = 618/915 (67%), Gaps = 43/915 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+T+ FDL Sbjct: 61 ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY +D+EA+ LWKKI+G KIIRI T+DNFW+M +TGPCGPCSEIF+DQG Sbjct: 121 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ+ +R LPK SIDTGMGLER+A +LQ Sbjct: 181 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYDIDL + LI A Q TG+ +G +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ L+PAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +L+ HL + +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+ F Sbjct: 361 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ QR+ AR G G T+ WF+L+E+ GAT F+GYD Sbjct: 420 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++++AI+Q G+ V +GQ +V +QTPFY E+GGQ+GDTG I G+ Sbjct: 462 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ + KK +F+H IVE G + + + +D+ R + NHSATHLLH AL Sbjct: 517 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD +H KP+T E IED N +I +N PV T++M+ EDA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEIMLL 708 + SGA AL G KY D VRVVS+ Y++ S LCGGTHV+ TG+I LL Sbjct: 637 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 696 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SES++ AG+RRIEA TG AR HL Q L SLA+ LK + R+ + EE R Sbjct: 697 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 756 Query: 769 KLQLIHAKRKLQLNVEDLSCH-------KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 KL ++ + +L + S + +I + F ++ V+ K+LKS+ D ++ I Sbjct: 757 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SGI+ +VG+ + KASV++ VT+DL+DRF+AV L RL+A LGG GGGGR +AQ+GGP+ Sbjct: 817 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 876 Query: 882 GNKADQAIAGVASFL 896 G A+ A+ + L Sbjct: 877 GEAAEAALTAIEESL 891 >gi|182679359|ref|YP_001833505.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635242|gb|ACB96016.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 901 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 472/915 (51%), Positives = 618/915 (67%), Gaps = 43/915 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 4 MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+T+ FDL Sbjct: 64 ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY +D+EA+ LWKKI+G KIIRI T+DNFW+M +TGPCGPCSEIF+DQG Sbjct: 124 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 183 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ+ +R LPK SIDTGMGLER+A +LQ Sbjct: 184 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYDIDL + LI A Q TG+ +G +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 244 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 303 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ L+PAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 304 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 363 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +L+ HL + +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+ F Sbjct: 364 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 422 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ QR+ AR G G T+ WF+L+E+ GAT F+GYD Sbjct: 423 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++++AI+Q G+ V +GQ +V +QTPFY E+GGQ+GDTG I G+ Sbjct: 465 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 519 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ + KK +F+H IVE G + + + +D+ R + NHSATHLLH AL Sbjct: 520 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 579 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD +H KP+T E IED N +I +N PV T++M+ EDA Sbjct: 580 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 639 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEIMLL 708 + SGA AL G KY D VRVVS+ Y++ S LCGGTHV+ TG+I LL Sbjct: 640 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 699 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SES++ AG+RRIEA TG AR HL Q L SLA+ LK + R+ + EE R Sbjct: 700 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 759 Query: 769 KLQLIHAKRKLQLNVEDLSCH-------KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 KL ++ + +L + S + +I + F ++ V+ K+LKS+ D ++ I Sbjct: 760 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 819 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SGI+ +VG+ + KASV++ VT+DL+DRF+AV L RL+A LGG GGGGR +AQ+GGP+ Sbjct: 820 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 879 Query: 882 GNKADQAIAGVASFL 896 G A+ A+ + L Sbjct: 880 GEAAEAALTAIEESL 894 >gi|163868621|ref|YP_001609830.1| alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476] gi|205829989|sp|A9IVY8|SYA_BART1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161018277|emb|CAK01835.1| Alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476] Length = 888 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 481/911 (52%), Positives = 643/911 (70%), Gaps = 37/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ +Y+ Sbjct: 1 MNSVNNIRSTFLDYFHRNGHQVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQHLYKK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+WDLLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWDLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW+KISGL +KI+RI T DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYQSDDVAAELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ +K+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQLSKEERVDLPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI ASE++TG+K G+ + +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFRVLIGASEKITGIKATGDFVASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM LLPAL EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWQLLPALICEMGQAYPELVRAESLISETLKLEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + LNG+VAFKLYDT+G PLD+ QD+L RG +D+ +F+ Sbjct: 361 KTLERGLGLLNEESAKLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRG-ISVDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q+ ARAH G G TE IWFS++++ G T+F+GY+ Sbjct: 420 KAMERQKEEARAHWSGSGEAVTETIWFSVRDQVGVTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V G+IV+E SGQK +V +QTPFY E+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGIITALVCDGKIVDEVSSGQKAILVLNQTPFYGESGGQIGDSGIISGEDF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKKA+G+F+H V+ G + + LT+D R+++ NHSATHLLH AL Sbjct: 517 IFEVHDTQKKADGVFIHLGKVKSGHAKISDCVQLTVDVVRRKKIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS ++P+ LRFD +H K ++ ELK IED N+I+ QN V TR+M ++A Sbjct: 577 VLGSHVTQKGSLVSPERLRFDFSHPKSVSLEELKKIEDLANEIVLQNNKVTTRLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS+ S LCGGTHV TG+I L++IVSES Sbjct: 637 ISEGAMALFGEKYEDEVRVVSMGAPLEQGGLKKHWSIELCGGTHVERTGDIGLIHIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG AR +L QD +++ ++ LK S ++ RV + +E RK + Sbjct: 697 SVSAGVRRIEALTGAAARLYLCRQDVRIREISDLLKTSSSDLEERVRSLLDERRKFEKEL 756 Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + ++ + I ++FM HI+ + ++LK+++DA +K+I SG++ Sbjct: 757 NDVRKKMVLNGKITESGQGDITIINGLSFMRHIVKNILPRDLKALVDAGKKQIGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + IS++ K S ++ VT+DL D+ NAVDL R+ + VLGG GGGGR MAQ+GGP+GNKA++ Sbjct: 817 ITISEDGKGSAVVGVTDDLTDKLNAVDLVRILSNVLGGQGGGGRSDMAQAGGPDGNKANE 876 Query: 888 AIAGVASFLKK 898 A A + FL+K Sbjct: 877 AFAALKDFLEK 887 >gi|260599084|ref|YP_003211655.1| alanyl-tRNA synthetase [Cronobacter turicensis z3032] gi|260218261|emb|CBA33198.1| Alanyl-tRNA synthetase [Cronobacter turicensis z3032] Length = 875 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 394/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGAQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFQKLIKAVANVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGSAGDELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDQTE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ V A+ G+ VE+ +GQ+ VV D+TPFYAE+GGQ+GD Sbjct: 466 ----------------LTARVTALFIDGKSVEQVAAGQQAVVVLDETPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+G + D QK H + G+L+ + +D R ++ +NHSATH Sbjct: 510 GELKGNGFTFTVNDTQKYG-QAIGHIGELTSGVLKVGEGVKAEVDQARRERIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + GLRFD +H + + E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY DRVRV+S+ G S+ LCGG H S TG+I L IV Sbjct: 629 NVMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A S + Q+++L L+ LK + +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQQAAQESANLSSKAIDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ +R A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTERVKAGELVGMIAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+ V S++ Sbjct: 862 AALGSVESWV 871 >gi|163749985|ref|ZP_02157229.1| alanyl-tRNA synthetase [Shewanella benthica KT99] gi|161330259|gb|EDQ01240.1| alanyl-tRNA synthetase [Shewanella benthica KT99] Length = 874 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 384/909 (42%), Positives = 554/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++RT FLE+F+KNGH+++ SSSL+P NDP+L+FTN+GM FK +F G++K Y T Sbjct: 4 TTAALRTAFLEYFRKNGHQVVDSSSLVPVNDPSLLFTNAGMNQFKGVFLGEDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E + + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITFAWNFLTQELKIPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D EA+ +W K G+SAD +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGISADNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG P E+G+R+IEIWN+VFMQ+ +Q+ E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGEMLALPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ + + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L MG A L++ + ++ ++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLIEVMGEAAKGLVETQAIVVKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LDG L+ L +L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDGALNALS-GNVLDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ QR RA+A G + + T+F GY L Sbjct: 420 EAGFELAMSAQRKRAQAA------GQFGTDYNDSLKIDEETEFSGYIDLVS--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + AI +QG+ V E +G++ VV D TPFY E+GGQ GD+G Sbjct: 465 --------------NAKITAIYKQGKSVTEINAGEEALVVLDTTPFYGESGGQCGDSGTL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +GI + D QK + H ++ G L SL ++D R++ +NHS THLLH Sbjct: 511 STNGIEFIVKDTQKYGQ-AVGHLGALKTGSLSLGQSLEASVDKSLRQRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + EL+++ED VN I N + ++M Sbjct: 570 AALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNSQIRHNHELTAQVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 TIDAAKEQGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q +L A LK G+VV +++ E ++L+ Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVTSQKVELDQAAKLLKADSGSVVIKLKAQLERTKQLEKEL 744 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K + +I V + + V+ L+ + D L++K+ SGI++L G Sbjct: 745 SQLKDKFAAATSADLAGEAQEINGVKVLIKKLDGVEPSALRGLQDELKQKLGSGIVVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ + K ++++ VT+DL + A +L A ++ GG GGGRP MAQ+GG D A+ Sbjct: 804 ITGDAKVNLIVGVTKDLTSKVKAGELVANIAALV-GGKGGGRPDMAQAGGCQPENLDAAL 862 Query: 890 AGVASFLKK 898 V+S+LK+ Sbjct: 863 NKVSSWLKE 871 >gi|78221425|ref|YP_383172.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15] gi|123572914|sp|Q39Z77|SYA_GEOMG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78192680|gb|ABB30447.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15] Length = 876 Score = 912 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 376/906 (41%), Positives = 542/906 (59%), Gaps = 42/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH ++PSS LIP NDPTL+F N+GM FK+ F G E Y Sbjct: 1 MTGNELRARFLKFFEDRGHTVVPSSLLIPHNDPTLLFANAGMNQFKDCFLGMEDRGYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD Sbjct: 61 TSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA +W G+ ++I R DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 KDRLYVTVYTDDDEAADIWHHQEGVPRERIFRFGEKDNFWSMGDTGPCGPCSEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + +RY+EIWN VFMQF + LPK S+DTGMGLER+ TV+Q Sbjct: 181 EVGCGSPDCTVGCDCDRYMEIWNNVFMQFNRSADGTMTPLPKPSVDTGMGLERICTVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD DL + +I+ E+++G +Y + V+ RVI DH R+++FLI DG+LP+NEGR Sbjct: 241 VKSNYDTDLLQGVIRHVERLSGKRYRENEKDDVSMRVIADHARATTFLICDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG+ EP++ + A+ MG +YPEL++ + I++ +R+E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVLYRTVDAVNEMMGGSYPELLEREEYIKKVIRAEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ ++ L ++ G+ F+LYDT G P D+ DI+ A G ID Sbjct: 361 FAETLDRGLAILNDAVAQLKGEGKTVIPGETLFRLYDTFGFPTDLTADIVRAEGFT-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + QR +AR H G G + L + + F+GYD Sbjct: 420 PGFEACMGRQREQAREHWKGSGEEGIAAVHKELHNRGVRSVFVGYDE------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + +I++ G V EA +G+ VE++ D+TPFY E+GGQ GDTG Sbjct: 467 ----------KCSYAAIGSILRGGSEVAEAKAGEDVEIITDRTPFYGESGGQAGDTGTIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +++T + + VH V G ++T + L + +R + NH+ATHLL Sbjct: 517 TGSAHVRVTGTIRPYPDLIVHRGTVVEGTIKTGEACDLKVASVDRDATARNHTATHLLQT 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD LRFD TH +T E++ +E+ VN I +N V R M Sbjct: 577 ALRRVLGEHVKQAGSLVAPDRLRFDFTHFAAMTPEEIRRVEEIVNTFIMENDTVHAREMA 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A+ SGA AL G KY DRVRVV V G S+ LCGGTHV + G+I I+SE+ Sbjct: 637 VEEAMESGATALFGEKYGDRVRVVKV-----GEVSAELCGGTHVRAAGDIGSFKILSEAG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG A H+ +++ + +A+ +K G+ + R++++ R++Q Sbjct: 692 IAAGVRRIEALTGMGALRHIQELEDEKRQIAALMKAEGGDNIDRLQKLLARQREMQREIE 751 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + QLN ++ V ++ + D K+L+ + D L+ ++ SG++ L G Sbjct: 752 TLQGQLNAAKSGDLLADVREVNGVKVLATKVEVDDPKKLRELADTLKDRLGSGVVAL-GC 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K+ +A++L+ VT+DL R A D+ R A V+ GG GGG+P +AQ+GG + +A+ Sbjct: 811 EKDGRANLLVAVTKDLAGRIRAGDIIRQLAPVI-GGSGGGKPELAQAGGSQPDMLAEALG 869 Query: 891 GVASFL 896 V + Sbjct: 870 KVYGLI 875 >gi|152988514|ref|YP_001349956.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7] gi|205830183|sp|A6VA71|SYA_PSEA7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150963672|gb|ABR85697.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7] Length = 874 Score = 912 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 396/912 (43%), Positives = 548/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +E QR RARA S + SL + G T+F+GY + G+ Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+ Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K +HH +V G L ++ +D R+ ++NHSATH Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVAEGGLSVGAAVKAEVDASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +LK++ED VN I +N V T Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEDIVNAEIRRNTEVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L G +E+LK A +K S+ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAAGLVKGSRDNLLDKLGALLERNRSLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + + I ++ + +D K L +++D L+ K+ +I+ Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVDIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + K ++ VT+DL + A +L + +A +GG G GGRP MAQ GG + K D Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|240850806|ref|YP_002972206.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup] gi|240267929|gb|ACS51517.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup] Length = 890 Score = 912 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 477/911 (52%), Positives = 641/911 (70%), Gaps = 37/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+ FL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+P Y+ Sbjct: 1 MNSVNNIRSIFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQPPYKQ 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAILLSWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW++ISGL +KI+RI T DNFWSM ETGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYQSDDVAAELWRRISGLPDEKIVRIATADNFWSMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ ++++R LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQISQEKRVDLPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI ASE++TG++ +G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFRALIAASEEITGIEAKGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPL+ LLPAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLLWRLLPALNREMGQAYPELVRAESLISETLRLEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + LNG+VAFKLYDT+G PLD+ QD+L RG +D+ +F+ Sbjct: 361 KTLERGLGLLNEASTDLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRG-ISVDVDTFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q+ ARA+ G G TEKIWFS+++K GAT+F+GY+ Sbjct: 420 KAMERQKEEARANWSGSGEAVTEKIWFSVRDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V G++V+ SGQK +V +QTPFY E+GGQ+GD+G G+ Sbjct: 462 -----TETAKGILTALVCDGKLVDHISSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q+K +G+F+H V+ G + LT+D R+++ NHSATHLLH AL Sbjct: 517 IFEVHDTQRKGDGVFIHIGEVKSGQASRSDCVELTVDVVRRKKIRGNHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS ++PD LRFD +H K ++ ELK IED N+II QN V+TR+M +DA Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSPEELKKIEDLANEIILQNSRVITRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS+ S LCGGTHV TG+I L++I SES Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGEPLEQRRLKKHWSIELCGGTHVERTGDIGLIHIFSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG+ AR +L QDE++ +A LK S V RV + ++ RKL+ Sbjct: 697 SVSAGVRRIEALTGKEARLYLSRQDERIHEIADLLKTSSAGVEERVRILLDDRRKLEKEL 756 Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + ++ + + I ++F ++ + ++LK+++D+ +K+I SG++ Sbjct: 757 NDVRKKMMLSGGITERSQGDITIINGLSFTGRVVKNILPRDLKALVDSEKKQIGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +S++ K S ++ VT+DL D+ NAVDL + + +LGG GGGGRP MAQ+GGP GNKAD+ Sbjct: 817 ISVSEDGKGSAVVGVTDDLTDKLNAVDLVHILSGMLGGKGGGGRPDMAQAGGPEGNKADE 876 Query: 888 AIAGVASFLKK 898 A A + FL+K Sbjct: 877 AFAALKDFLEK 887 >gi|146281753|ref|YP_001171906.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501] gi|145569958|gb|ABP79064.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501] Length = 900 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 400/912 (43%), Positives = 547/912 (59%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 27 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 86 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 87 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLK 146 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 147 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 206 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 207 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 266 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ A+ G + +V+ DH+RS FLIADG+ Sbjct: 267 RISAVLQHVNSNYEIDLFQSLLNAAADAIGCA--NEGQASLKVVADHIRSCGFLIADGVT 324 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 325 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVL 384 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 385 KNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT 443 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + G T+FIGY G Sbjct: 444 -LDEEGFEREMQAQRERARSASAFGM------DYNSLVKVEGETRFIGYQGTSG------ 490 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ +QG +V+ +G++ VV DQTPFYAE+GGQ+GD Sbjct: 491 -----------------SGKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDC 533 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K F+HH IV+ G L T + T+D R+ ++NHSATH Sbjct: 534 GYLEAQGLRFDVRDTSKAGG-AFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATH 592 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + I +L+++ED VN I +N V Sbjct: 593 LLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEI 652 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D VRV+++ GG S LCGGTHV+ TG+I L I Sbjct: 653 EETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKIT 708 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R+L+ Sbjct: 709 SEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLE 768 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + S ++ + ++ +D K L +++D L+ K+ S +I+ Sbjct: 769 KELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVIL 828 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G+ ++ K ++ VT+DL R A DL R +A +GG G GGRP MAQ GG + K D Sbjct: 829 LGGV-QDDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 886 Query: 887 QAIAGVASFLKK 898 +A+A F ++ Sbjct: 887 EALALALPFAQQ 898 >gi|91774923|ref|YP_544679.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT] gi|122400203|sp|Q1H3U9|SYA_METFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91708910|gb|ABE48838.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT] Length = 874 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 381/912 (41%), Positives = 535/912 (58%), Gaps = 56/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSNQIRQAFLDYFASKGHQIVSSSSLVPAGDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 61 TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTQVFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L +TVY ED+EA+ +W + G+ A+++IRI N DNFW M +TGPCGPC+E Sbjct: 121 ADKLTVTVYAEDDEAYDIWTREIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE IPGG P E+G+R+IEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + + +V+ DH+R+ SFLIADG++P Sbjct: 241 AAVLQGVHSNYEIDLFQNLIKAAARVTNTTD--LDSPSLKVLADHIRACSFLIADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + ++ AL EMG AYPEL + I LR Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGARQAFFHLMVSALVNEMGDAYPELKSGEERITSILRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF +T++ G+ +L+ L + K + + NG+ AFKL+DT G PLD+ D+ RG Sbjct: 359 EEDRFFETIEHGMAILEAELEEMAKTGNHVFNGETAFKLHDTFGFPLDLTADVCRERG-V 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ Q+ +ARA + +L+ AT F GYD L Sbjct: 418 SVDSAAFDAAMARQKEQARAAGKFKMAA-------NLEYTGNATTFHGYDTLE------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G V G+ VV D TPFYAE+GGQ+GD Sbjct: 464 ----------------AQGKVLALYKDGSAVPALNEGELGVVVLDNTPFYAESGGQVGDQ 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G Q+ D QK +F HH ++ G LR + +D +R + +HSATH Sbjct: 508 GILKGAEGIFQVEDTQKIQASVFGHHGVLSTGTLRVGDEVSARVDLLSRHRTMRHHSATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + PD RFD +H+ P+T+ E++ IED VN I N P + Sbjct: 568 LMHKALRAVLGSHVQQKGSLVDPDKTRFDFSHNAPVTADEIRRIEDIVNAEILANTPTLA 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M ++A +GA L G KY D VRV+ + S LCGGTHVS TG+I L IV Sbjct: 628 RVMPIDEAQKTGAMMLFGEKYGDEVRVLDIG------TSRELCGGTHVSRTGDIGLFKIV 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES + AG+RRIEA G A H+ Q + L A+ KV + G++ + E+ + L+ Sbjct: 682 SESGVAAGVRRIEAAAGDVALRHIQQQQQLLADAAASFKVPAIELAGKISQTLEQIKALE 741 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ K +L I + ++ + D+ L+ MD L+ K+++ I+ Sbjct: 742 KELARLKSKLASSQGDELASQAVNIGGIKVLAATLEGADANTLRETMDKLKDKLKTAAIV 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K SV VT D R A +L A + GG GGG+P MA +GG + ++ Sbjct: 802 LASVNGD-KVSVAAGVTTDTTARIKAGELVNFVAAQV-GGKGGGKPDMAMAGGSDPSQLP 859 Query: 887 QAIAGVASFLKK 898 +A+A VA ++++ Sbjct: 860 RALASVAGWVEE 871 >gi|156932779|ref|YP_001436696.1| alanyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894] gi|205830089|sp|A7MJ41|SYA_ENTS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|156531033|gb|ABU75859.1| hypothetical protein ESA_00569 [Cronobacter sakazakii ATCC BAA-894] Length = 875 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFQKLIKAVANVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGVAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHTE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ V A+ G+ VE+ +GQ+ VV D+TPFYAE+GGQ+GD Sbjct: 466 ----------------LTAKVTALFVDGKSVEQVTAGQQAVVVLDETPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+G + D QK H + G+L+ + +D+ R ++ +NHSATH Sbjct: 510 GELKGNGFTFTVNDTQKYG-QAIGHIGELASGVLKVGEGVKAEVDHARRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + GLRFD +H + + E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY DRVRV+S+ G S+ LCGG H S TG+I L IV Sbjct: 629 NVMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A S + Q+++L L+ LK + +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQQAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMIAQQV-GGKGGGRPDMAQAGGSDAAALP 861 Query: 887 QAIAGVASFL 896 A+ V S++ Sbjct: 862 AALGSVESWV 871 >gi|13470354|ref|NP_101920.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099] gi|20532259|sp|Q98NQ5|SYA_RHILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|14021093|dbj|BAB47706.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099] Length = 888 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 469/902 (51%), Positives = 631/902 (69%), Gaps = 37/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRKEGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L Sbjct: 61 ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHVWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + ++RVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 VESVFETDLFRHLIDAASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + L+ ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLVTETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL L ++L+G+ AFKLYDT+G PLD+ QD L R +D+ F Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRN-ISVDLAGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ AR H G G TE +WFS++E+ GAT+F+GY+ Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREQTGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++A+V+ G+ V+ A G V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 462 -----TEQAEGLIQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I+D QKKA+G+FVH V G ++T ++ L +D+ R +L NHSATHL+H AL Sbjct: 517 SIEISDTQKKADGLFVHLGKVASGTVKTGAAVELKVDHARRTRLRANHSATHLIHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFD++H+KPI++ EL+ +E N+I+ QN PV TR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISAEELEEVERMANEIVVQNSPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV +TG+I L+ +VS+S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR HL QD +LK+ A+ LK+S +V RVE + EE +KL+ Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKAAAATLKISPADVPARVEALLEERKKLEKDL 756 Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + +A V F+ +S V K+LK + DA + + SG+++ Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKAVSGVSPKDLKPLADAGKSSLGSGVVVF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG ++ KASV++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+ +KA+ Sbjct: 817 VGADEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAND 876 Query: 888 AI 889 AI Sbjct: 877 AI 878 >gi|205830255|sp|A4VJB3|SYA_PSEU5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 400/912 (43%), Positives = 547/912 (59%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLK 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ A+ G + +V+ DH+RS FLIADG+ Sbjct: 241 RISAVLQHVNSNYEIDLFQSLLNAAADAIGCA--NEGQASLKVVADHIRSCGFLIADGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + G T+FIGY G Sbjct: 418 -LDEEGFEREMQAQRERARSASAFGM------DYNSLVKVEGETRFIGYQGTSG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ +QG +V+ +G++ VV DQTPFYAE+GGQ+GD Sbjct: 465 -----------------SGKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K F+HH IV+ G L T + T+D R+ ++NHSATH Sbjct: 508 GYLEAQGLRFDVRDTSKAGG-AFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + I +L+++ED VN I +N V Sbjct: 567 LLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEI 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D VRV+++ GG S LCGGTHV+ TG+I L I Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R+L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLE 742 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + S ++ + ++ +D K L +++D L+ K+ S +I+ Sbjct: 743 KELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G+ ++ K ++ VT+DL R A DL R +A +GG G GGRP MAQ GG + K D Sbjct: 803 LGGV-QDDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F ++ Sbjct: 861 EALALALPFAQQ 872 >gi|319784062|ref|YP_004143538.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169950|gb|ADV13488.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 888 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 472/902 (52%), Positives = 632/902 (70%), Gaps = 37/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRKEGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T+EF L Sbjct: 61 ASTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 SKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + ++RVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 VESVFETDLFRHLIDAASSAIGHGPDKETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL L ++L+G+ AFKLYDT+G PLD+ QD L + +D F Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALR-QRSISVDTAGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ AR H G G TE IWFS++EK GAT+F+GY+ Sbjct: 420 NAMEQQKAEARKHWAGSGDAATETIWFSVREKAGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I++A+V+ G+ V+ A G V +V +QTPFYAE+GGQ+GDTG G+G Sbjct: 462 -----TEAAEGIIQALVRDGKAVDGAGKGDAVAIVVNQTPFYAESGGQMGDTGVISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++++D QKKA+G+FVH V G ++T ++ L +D+ R +L NHSATHL+H AL Sbjct: 517 SIEVSDTQKKADGLFVHIGKVASGTVKTGAAVELKVDHARRSRLRANHSATHLIHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS + P+ LRFD++H+KPI++ +L+ +E N+I+ QN PV TR+M+ +DA Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHNKPISAEDLEEVERMANEIVVQNGPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV +TG+I L+ +VS+S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR HL QD +LK+ A+ LK+S +V RVE + EE +KL+ Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756 Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L + S +A V F+ +S V K+LK + DA + + SG+++ Sbjct: 757 TEARKKLALGGGSSADAPAANETVAGVGFLGKTVSGVSPKDLKPLADAGKTSLGSGVVVF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG ++ KASV++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+ +KAD Sbjct: 817 VGSGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKADD 876 Query: 888 AI 889 AI Sbjct: 877 AI 878 >gi|149911059|ref|ZP_01899687.1| alanyl-tRNA synthetase [Moritella sp. PE36] gi|149805885|gb|EDM65873.1| alanyl-tRNA synthetase [Moritella sp. PE36] Length = 873 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 386/911 (42%), Positives = 528/911 (57%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL++F GH SSSL+P NDPTL+FTN+GM FK++F G E+ Y Sbjct: 3 MSTAEIRNAFLDYFASKGHNKGTSSSLVPANDPTLLFTNAGMNQFKDVFLGAEQRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT + Sbjct: 63 TTSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAILFAWEFLTVVLKIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + +L +TVY+ D EAF W G+ DKIIRI DNFWSM +TGPCGPCS Sbjct: 123 KEKLLVTVYESDNEAFSFWANKVGVPEDKIIRIGDKSPEKKFESDNFWSMGDTGPCGPCS 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG+PGS E+G+R+IEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 183 EIFYDHGEDIWGGVPGSPEEDGDRFIEIWNLVFMQFNRQADGTMEELPKPSVDTGMGLER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A ++Q +NY+ID+F+ LI+ ++ G + RVI DH+R+ SFLI+DG++P Sbjct: 243 IAAIMQNVHSNYEIDIFQSLIKHVAELIGTTD--LEHKSLRVIADHIRACSFLISDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG P L+ + MG +L++ + ++E+ L Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGPFFNKLVAKMVELMGDISDDLVKQQAIVEKILL 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+FGKTL+RGL +LD LS L +++ GDV FKLYDT+G P D+ DI R L Sbjct: 361 IEEEQFGKTLERGLNILDNELSQLD-GKVVPGDVVFKLYDTYGFPSDLTADIARERELT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+E QR+RAR S + + + T+F+GY L Sbjct: 419 IDEDGFKTAMEAQRNRARQGSNFG------TDYNEMLKIDAKTEFLGYQTLTSD------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + A+++ VE GQ+ +V ++TPFYAEAGGQ GD G Sbjct: 467 -----------------AQIVALIKDNAEVELLNDGQEGAIVLNKTPFYAEAGGQSGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +TD +K H G++ ++ +D R+ + +NHS THL Sbjct: 510 VIKIGDAVFTVTDTKKAGNATI--HFGSVSGVIEVNSQVIADVDVSRRKAIGLNHSVTHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 H AL ++G +V Q GS + P+ LRFD +H + +T A+L +E VN I N VVT Sbjct: 568 AHAALRKVVGDNVQQKGSLVLPERLRFDFSHFEGVTPAQLIEVERLVNAQIRANHEVVTE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ + A +GA AL G KY+D VRVV + G S LCGGTHV TG+I I+S Sbjct: 628 VMDIDAAREAGAMALFGEKYDDEVRVVRM-----GDFSIELCGGTHVKRTGDIGFFKILS 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RR+EA+TG A +++ K++ AS +K Q VV +V ++ + R L+ Sbjct: 683 ESGIAAGVRRVEAVTGDSALAYVHDLVAKMQETASLVKADQNTVVAKVSQVLDRNRSLEK 742 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +Q+ I V + + D K L+S MD L+ K+QSGII+L Sbjct: 743 EVEKLNVQVASAANANLIDQVQVINGVKVLVANLKGADPKSLRSSMDELKNKLQSGIIVL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 GI E K +++ VT+DL+ + A +L A + GG GGGRP MAQ+GG N Sbjct: 803 -GIPGEGKVNLITGVTKDLIGKVKAGELVSFLAVQV-GGKGGGRPDMAQAGGSNPEALAA 860 Query: 888 AIAGVASFLKK 898 A+ V +L + Sbjct: 861 ALESVTPWLTE 871 >gi|113461263|ref|YP_719332.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT] gi|123132149|sp|Q0I426|SYA_HAES1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|112823306|gb|ABI25395.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT] Length = 874 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 386/913 (42%), Positives = 543/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y Sbjct: 1 MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ + IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE + GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ V+Q +NYDID+F+ LI ++TG K + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKD--LTNKSLRVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG + L+P L M +A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L ++ D +L+G+VAFKLYDT+G PLD+ D+ R Sbjct: 359 LRLEEEQFARTLERGLALLDEALINVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERN- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + +E QR RA+A S + ++ G T F GY Sbjct: 417 IRIDEEGFEREMEVQRLRAQAASRFG------VDYNNVIRVEGTTTFEGYTEAE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ +G+ VE +GQ V+ D TPFYAE+GGQ+GD Sbjct: 465 -----------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 GC I +R + D QK +F H + +G L ++ +D ++R + S+NHSAT Sbjct: 508 RGCLIATNMRFDVKDTQKYG-QVFGHIGTLIQGTLNVGQTINAVVDTEHRTKTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG+HV+Q GS ++ LRFD + I +L IE VN I N VV Sbjct: 567 HLLHAALRQVLGTHVAQKGSLVSDTILRFDFAQPEAIRQEQLFEIECLVNQHIRANHLVV 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M ++A A GA AL G KY D VRVV + G S LCGG HV TGEI L I Sbjct: 627 TEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSES+I AG+RR+EA+TG+ A + L Q + L A LK ++V +++++ ++ +K Sbjct: 682 VSESAIAAGVRRVEAVTGEAAINWLQQQQQILMQSADLLKSDANSLVEKIQQLQDKAKKT 741 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S +I V+ + + +D K L+ ++D L+ ++ S +I Sbjct: 742 EKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFV-TKTEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENI 859 Query: 886 DQAIAGVASFLKK 898 +A+ +L K Sbjct: 860 SKALTVCNEWLHK 872 >gi|146312813|ref|YP_001177887.1| alanyl-tRNA synthetase [Enterobacter sp. 638] gi|205830088|sp|A4WDQ6|SYA_ENT38 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145319689|gb|ABP61836.1| alanyl-tRNA synthetase [Enterobacter sp. 638] Length = 875 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 394/910 (43%), Positives = 562/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PG++ E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGTAEEDGDRYIEIWNIVFMQFNRQIDGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF LI++ +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFSTLIKSVAEVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVGVMGDAGEELKRQQSQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSQLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFQGYDRLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ V A+ G+ V+ +GQ VV D+TPFYAE+GGQ+GD Sbjct: 466 ----------------LNAKVTALFVDGKAVDSISAGQDAVVVLDKTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+G ++D QK H + G L+ + +D R ++ +NHSATH Sbjct: 510 GELKGNGFSFAVSDTQKYG-QAIGHIGKLASGSLKVGEGVQAEVDEARRERIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 569 LMHAALRDVLGTHVAQKGSLVNDKILRFDFSHFEAMKPSEIRAVEDMVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L + ++L +A LK N+ +V E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAESDQLHDIAQLLKGDSHNLGEKVRSALERSRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q V++ I V + ++ V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAVQESANLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATAV-DGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|238921100|ref|YP_002934615.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146] gi|238870669|gb|ACR70380.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146] Length = 875 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 386/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M ETGPCGPC Sbjct: 123 LPKEKLWVTVYESDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG P E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +V G+ + + RVI DH+RS +FL++DG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVSD--LSSKSLRVIADHIRSCAFLVSDGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG E L+ L MG++ L Q + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGASADALAQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G PLD+ D+ R L Sbjct: 361 KTEEEQFARTLERGLTLLDDELSTLD-GDTLDGETAFRLYDTYGFPLDLTADVCRERSLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E QR RAR S + S+ G+T F GY Sbjct: 420 -VDEEGFERAMEAQRCRARE------SSGFGADYNSMIRVDGSTDFTGY----------- 461 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++V A+ GE V+ +G++ VV QTPFYAE+GGQ+GD Sbjct: 462 ------------HLQQQDALVTALFHNGEAVDVLQAGEEGVVVLAQTPFYAESGGQVGDR 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + G R + D QK + H V +G LR + ID R ++ +HSATH Sbjct: 510 GELMAQGCRFVVEDTQKYGQ-AIGHLGKVAQGSLRVGERVQAGIDGARRERIRQSHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL ++LG HV+Q GS ++ LRFD +H++ + +++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPRQIRQVEDIVNAQIRRNLPIDT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M E+A A GA AL G KY+ +VRV+S+ G S+ LCGGTH TG+I L IV Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG++A + + + L+ AS +K +V ++ + E+ R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLE 743 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ ++ V + + V+ K L++++D L+ ++ S I++ Sbjct: 744 KALHQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMSSCIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L K S++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATAEA-GKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDTAALP 861 Query: 887 QAIAGVASFL 896 QA+A VA ++ Sbjct: 862 QALASVADWV 871 >gi|170727677|ref|YP_001761703.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908] gi|205830209|sp|B1KPS5|SYA_SHEWM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169813024|gb|ACA87608.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908] Length = 874 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 375/909 (41%), Positives = 545/909 (59%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAISFAWNFLTQELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF +W K G+ A+ +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAFDIWTKEIGVPAESLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T L+P L MG A L++ + ++E++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVETQAIVEKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LDG L+ L ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDGALNELK-GDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L Sbjct: 420 EAGFEVAMAEQRSRAQAA------GQFDTDYNDSLKIDEETHFSGYTEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V AI + GE + +G+ +V D TPFY E+GGQ GD G Sbjct: 463 ------------TAQGKVTAIYKAGESTDSLNAGEDAVIVLDSTPFYGESGGQCGDKGLL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+ + D QK + + V G + +L +D + R + +NHS THLLH Sbjct: 511 TAKGVEFDVKDTQKYGQAVGHQ-GTVNSGSISVGDTLEAIVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + + LRFD +H + + ELK++ED VN I +N + +M Sbjct: 570 AALRQLLGTHVTQKGSLVDAERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSADVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DMDQAKERGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L A+ LK +VV +++ + + L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAAQKAELDQAAALLKADSNSVVTKLKAQLDRTKLLEKEL 744 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K +L ++ + + VD+ L+ + D L++K+ SG+++L Sbjct: 745 SQLKDKLAAATSADLAGEAKQVNGAKVLIKKLEGVDAGALRGLQDELKQKLGSGVVVLA- 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ E K ++++ VT+DL + A +L A + GG GGGRP MAQ+GG K D A+ Sbjct: 804 IAGEAKVNLIVGVTKDLTAKVKAGELVASIAAQV-GGKGGGRPDMAQAGGTEPEKLDGAL 862 Query: 890 AGVASFLKK 898 V +L++ Sbjct: 863 EQVLPWLEE 871 >gi|92112758|ref|YP_572686.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] gi|122420679|sp|Q1QZX1|SYA_CHRSD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91795848|gb|ABE57987.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] Length = 868 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 398/903 (44%), Positives = 548/903 (60%), Gaps = 47/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+++GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++ Y Sbjct: 1 MKSADIRQAFLTFFEEHGHTIVPSSSLVPANDPTLLFTNAGMVPFKDVFLGRDPRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L Sbjct: 61 TSAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRGAIRFAWTFLTERLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L++TV+ D+EA ++WK G+ + ++ DNFW M +TGPCGP SEIFFD G Sbjct: 121 ADKLWVTVHVSDDEAERIWKDEIGIDPARFSKL-DEDNFWQMGDTGPCGPSSEIFFDHGP 179 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS E+G+RYIEIWNLVFMQF++ + LPK SIDTGMGLER+A VLQ Sbjct: 180 EVAGGPPGSPEEDGDRYIEIWNLVFMQFDRDSAGTLNPLPKPSIDTGMGLERVAAVLQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF++L+ A+ + TG Y+ + + RVI DH+RS +FLI D +LP+NEGRGYV Sbjct: 240 HSNYEIDLFQNLLNAASEATG--YDDTSAPSLRVIADHIRSCAFLITDDVLPSNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG EP L+ AL EMG+AYPEL +A+ IE+ L E+E+F + Sbjct: 298 LRRIIRRAIRHGHKLGAREPFFHTLVAALDAEMGAAYPELRKARPRIEKVLLKEEEQFAR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD G+ LL L L E+L G+ FKLYDT+G P D+ D+ RG+ +D + F + Sbjct: 358 TLDHGMGLLTEALETLD-GEVLPGETVFKLYDTYGFPFDLTADVCRERGVT-LDEVGFQR 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 LE QR RARA S + + + G T F GY+ L Sbjct: 416 ELEAQRERARAASQFG------ADYTAALDLEGETAFTGYERLED--------------- 454 Query: 481 PIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A+V +G + +GQ VV D+TPFY E+GGQ GDTG DG+ Sbjct: 455 --------EARVTALVDREGNALAALEAGQHGVVVLDRTPFYGESGGQAGDTGYLEADGM 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R Q+TD QK+ +HH ++ G L S+ +D R NHSATHLLH AL Sbjct: 507 RFQVTDTQKQGGH-HLHHGVLVEGRLDVGASVTPRVDASLRAATMRNHSATHLLHEALRQ 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS +T + LRFDV+H + +T A+L +E VN I N M ++A Sbjct: 566 VLGEHVQQKGSLVTAERLRFDVSHFEAMTRAQLDEVERIVNAQILANAATRIEHMTLDEA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GAAAL KY D VRV+++ +D S LCGGTHV+ +G+I +I+SE+ + AG Sbjct: 626 KAKGAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCFHILSEAGVAAG 682 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG+ A ++ Q+ K+ +A LK V R+E E R L+ + K Sbjct: 683 VRRIEAVTGEGALAYFRDQEAKVARVAEQLKAKPEQVEARLEATLERNRTLEKELERLKA 742 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L ++A V ++ + V KEL+ ++D L+ K+ SG+I+L G++ ++ Sbjct: 743 KLASATSGDMLADVREVAGVKLLAKQVEGVGGKELRGLLDQLKNKLGSGVIVL-GVAGDE 801 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S++ VT+DL R A DL + A+ + GG GGGR MAQ+GG A+A V S Sbjct: 802 KVSLIAGVTDDLTARLKAGDLVKHVAEQV-GGKGGGRADMAQAGGSRPQALPDALASVPS 860 Query: 895 FLK 897 +++ Sbjct: 861 WVE 863 >gi|327480000|gb|AEA83310.1| alanyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166] Length = 874 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 400/912 (43%), Positives = 548/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ A+ G + +V+ DH+RS FLIADG+ Sbjct: 241 RISAVLQHVNSNYEIDLFQSLLNAAADAIGCA--NEGQASLKVVADHIRSCGFLIADGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + G T+FIGY G Sbjct: 418 -LDEEGFEREMQAQRERARSASAFGM------DYNSLVKVEGETRFIGYQGTSG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ +QG +V+ +G++ VV DQTPFYAE+GGQ+GD Sbjct: 465 -----------------SGKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K F+HH IV+ G L T + T+D R+ ++NHSATH Sbjct: 508 GYLEAQGLRFDVRDTSKAGG-AFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + I +L+++ED VN I +N V Sbjct: 567 LLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEI 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A A GA AL G KY D VRV+++ GG S LCGGTHV+ TG+I L I Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R+L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLE 742 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + S ++ + ++ +D K L +++D L+ K+ S +I+ Sbjct: 743 KELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G+ ++ K ++ VT+DL R A DL R +A +GG G GGRP MAQ GG + K D Sbjct: 803 LGGV-QDDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F ++ Sbjct: 861 EALALALPFAQQ 872 >gi|238786914|ref|ZP_04630715.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] gi|238725282|gb|EEQ16921.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] Length = 875 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 386/911 (42%), Positives = 551/911 (60%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGAAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF++LI A VTG + + RVI DH+R+ +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRNLISAVADVTGATD--LSSKSLRVIADHIRACAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELDKLT-GDTLDGETAFRLYDTYGFPIDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + +L A+QF GYD + Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYDHV-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GD Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLTHGTLRVNHSVDAQVDVVRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDIVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M E A GA AL G KY+D+VRV+++ G S+ LCGG H + TG+I L I+ Sbjct: 629 EVMELEAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L +A +K N+ +V + + + L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLADVAHLVKGDTNNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVKGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATTA-DDKVSLIVGVTKDLTSKVKAGELIADIAQQV-GGKGGGRPDMAQAGGSDVQALP 861 Query: 887 QAIAGVASFLK 897 A+A V ++++ Sbjct: 862 SALASVEAWVE 872 >gi|123441185|ref|YP_001005172.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|205830291|sp|A1JK09|SYA_YERE8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122088146|emb|CAL10934.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 875 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + +L A+QF GY+ + Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYNHV-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDT Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDTNNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG N Sbjct: 804 LATTA-DDKVSLIVGVTKDLTSKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 SALASVEAWV 871 >gi|117621345|ref|YP_858162.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|205829972|sp|A0KPG1|SYA_AERHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117562752|gb|ABK39700.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 874 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 374/910 (41%), Positives = 551/910 (60%), Gaps = 53/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IRT FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 MSTSEIRTAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+ L Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RL +TVY D+EAF +W+K G+ AD+I+RI N DNFW+M +TGPCGPC+E Sbjct: 123 KERLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS E+G+R+IEIWN+VFMQF +Q LP+ S+DTGMGLER+ Sbjct: 183 IFYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+ + ++ G + + RVI DH+RS +FL+ADG++P+ Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTSD--LSNQSLRVIADHIRSCAFLVADGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + R LG TE L L +M ELI L+E LR Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATEVFFYKLAAELAAQMKDVAAELIAQLPLVERVLRI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TLDRGL+LL+ VL++LG +++ G+V FKLYDT+G P D+ D++ R GI Sbjct: 361 EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVRER-EIGI 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +E+QR+RA+ S + + + + T F GY L Sbjct: 420 DEEGFKAEMEKQRARAKEASSFGVN------YNEMLKLDFETPFTGYKTL---------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V I + + V ++G + +V +QTPFYAE+GGQ+GD+G Sbjct: 464 -------------TERTRVVGIYKGVDEVSGLIAGDEAVIVLEQTPFYAESGGQIGDSGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D +TD K + I +E G L + +D + R+ +++NHS THLL Sbjct: 511 LKVDDGIFAVTDTVKAGKAIIHK-GYMELGTLEKGAEVEAVVDGERRQAIALNHSVTHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL LG HV+Q GS + + +RFD +H + +T A ++ +E+ VN+ I N + T++ Sbjct: 570 HAALRQALGEHVTQKGSLVGAERMRFDFSHFEGMTMATIRRVEELVNNQIRANHEITTQL 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A ++GA AL G KY D VRVV + G +S+ LCGGTH TG+I I++E Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA+TG+ A + E+++ A+ +K Q + +V ++ ++ + ++ Sbjct: 685 SGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQVLDKAKMMERE 744 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K +L + + +I + + D K L+ ++D L+ +++SG+++L Sbjct: 745 LEQLKAKLAAQAGNDLLGQVIEIKGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S E K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG A Sbjct: 805 -TSGEGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862 Query: 889 IAGVASFLKK 898 + V S+L++ Sbjct: 863 LQSVHSWLEE 872 >gi|307825703|ref|ZP_07655920.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96] gi|307733280|gb|EFO04140.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96] Length = 870 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 374/903 (41%), Positives = 539/903 (59%), Gaps = 46/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +RT FLEFF++ GH + PSSSLIP NDPTL+FTN+GMV FK++F G++ Y Sbjct: 4 MTSAQLRTAFLEFFRERGHAIQPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDHRDYNKA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AWD LTKE ++ Sbjct: 64 ATSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWDFLTKELEIP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ITV+DED EA K+W G+S + RI DNFWSM + GPCGPC+EIF+D G Sbjct: 124 AEKLWITVFDEDSEAEKIWLDDVGVSPVRFSRIGAKDNFWSMGDVGPCGPCTEIFYDHGA 183 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P E+G+RYIEIWNLVFMQ+++ LPK S+DTGMGLER+A VLQ Sbjct: 184 DIAGGPPGSPDEDGDRYIEIWNLVFMQYDRSADGSLTPLPKPSVDTGMGLERIAAVLQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ L++A+ ++ G + RVI DH+RS +FLIADG++P+NEGRGYV Sbjct: 244 HSNYEIDLFQKLLKAAAELAGTSD--LTQSSLRVIADHIRSCAFLIADGVMPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RRI+RRA+ + LG + L+ L EMG A+PEL A+ +E L+ E+ERF + Sbjct: 302 VRRIIRRAIRHGYRLGIRDVFFYKLVAPLAEEMGEAFPELKAAQEQVERVLKKEEERFAE 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++G+ +L+ ++ + ++ GD F+LYDT+G P+D+ D L +D F Sbjct: 362 TLEQGMKILEACVAKME-GSVIPGDTVFQLYDTYGFPVDLTADFARENNLT-VDHAGFET 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ QR RAR+ S + + T+F GYD L Sbjct: 420 AMSAQRERARSASSFG------ADYDQDIKLDAQTEFTGYDHLDDQVH------------ 461 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + ++G+ V+ G++ V+ D+TPFYAE+GGQ+GD G DG Sbjct: 462 -----------IIGLYKKGQPVDSLEDGEEGVVILDKTPFYAESGGQIGDCGKIEADGAV 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++TD QK+ +F+H + G L + +R +NHSATHLLH AL + Sbjct: 511 FEVTDTQKQGGNLFLHKGKLLTGTLTNGQLCDARVSAADRTATELNHSATHLLHAALRQV 570 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P+ LRFD +H +P+T++E+ ++E VN+ I N PV ++M ++DA+ Sbjct: 571 LGDHVAQKGSLVNPERLRFDFSHFEPVTASEISTVERIVNEQIRANNPVSAQVMAKDDAV 630 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY D VRV+ + G S+ LCGGTHV G+I I++E+ + AG+ Sbjct: 631 KAGAMALFGEKYGDEVRVLKI-----GEFSTELCGGTHVERAGDIGCFKIINETGVAAGV 685 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG + G+D L S+A +K + +VE++ E+ R L+ + + Sbjct: 686 RRIEAVTGGGCIEWIAGRDHALASIAGLVKSAPEKTPEKVEQLIEKNRLLEKQLERLNAK 745 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + ++ + VD K LK ++D L+ K+ S I+L + + K Sbjct: 746 LASSAGNELGAQAVDVGGIKVLAVKLDGVDPKSLKDMVDQLKNKLGSAAIVLAVVDGD-K 804 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+D + R A DL A + GG GGGRP MAQ+GG + + A+A V ++ Sbjct: 805 VSLIAGVTKDQMGRIKAGDLVNFVATKV-GGKGGGRPDMAQAGGNDPSGLADALAQVPAW 863 Query: 896 LKK 898 +K+ Sbjct: 864 VKE 866 >gi|85058516|ref|YP_454218.1| alanyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans'] gi|123520018|sp|Q2NVL2|SYA_SODGM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|84779036|dbj|BAE73813.1| alanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans'] Length = 875 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 547/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y+ Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDNRFYRRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTGEHWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYNIWASEVGIPAERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTLLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLFK LI A+ + TG + + RVI DH+RS FL++DG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFKTLIAAAAEATGASD--PDSKSLRVIADHIRSCVFLVSDGVV 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG ++ L+ L MGSA +L + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAIRHGNMLGASDTFFYKLVAPLIDVMGSAASQLQPQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R+E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G LD+ D+ R L Sbjct: 361 RAEEEQFARTLERGLTLLDDELAKLT-GDTLDGETAFRLYDTYGFSLDLTADVCRERNLR 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E QR RAR S + SL T+F GY+ L Sbjct: 420 -VDEAGFERAMEAQRKRARE------SSGFGADYNSLLRVDETTRFFGYEHLEH------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G++V G++ VV D+TPFY E+GGQ+GD Sbjct: 467 -----------------QGRVTALFRDGQLVGVIRQGEEAVVVLDETPFYGESGGQVGDR 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++ D QK + F H + G L+ + +D R ++ +NHSATH Sbjct: 510 GVLKAASGVFEVADTQKYGK-AFGHQGKLSYGELKLGAQVTAQVDSARRERIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H++ + +++ +E+ VN+ I NLP+ T Sbjct: 569 LLHAALRQVLGDHVGQKGSLVNDHYLRFDFSHNEAMKPEQIRRVEEIVNEQIRCNLPIQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM EDA GA AL G KY +VRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 DIMALEDARNKGAMALFGEKYEAQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEA+TG+ A + L Q + ++ +A +K +V +V + E R+L+ Sbjct: 684 AESGTAAGIRRIEAVTGEEALASLHQQSDLVQHIAQLVKGDSQTLVDKVRALQERSRQLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + I V + + + K L++++D L+ ++ S +I+ Sbjct: 744 KDLQQLKNQQAAQESASLGRNVRDINGVKVLVRQLDSAEPKMLRTMVDDLKNQLGSAVII 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ VT+DL DR A D+ A+ + GG GGGRP +AQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGDIVGHLAQQV-GGKGGGRPDLAQAGGSDIAALP 861 Query: 887 QAIAGVASFL 896 A+A V + L Sbjct: 862 AALASVDAML 871 >gi|121998432|ref|YP_001003219.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1] gi|205830063|sp|A1WXK5|SYA_HALHL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|121589837|gb|ABM62417.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1] Length = 863 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 385/902 (42%), Positives = 537/902 (59%), Gaps = 49/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF++ GHE++PSS L+P NDPTL+FTN+GMVPFK +F G+E+ YQ Sbjct: 1 MTSAQLRAAFLDFFRERGHEVVPSSPLVPANDPTLLFTNAGMVPFKEVFLGREQRGYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ +L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRYAWSFLTEVVELP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY++D+EA ++W + G+ + RI +DNFWSM +TGPCGPCSE+F+D G Sbjct: 121 PERLWVTVYEDDDEAAQIWLEEIGVDPARFRRIGAHDNFWSMGDTGPCGPCSEVFYDHGP 180 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS E+G+RYIE+WNLVFMQ+++ + LP SIDTGMGLER+A VLQ Sbjct: 181 EVPGGPPGSDEEDGDRYIEVWNLVFMQYDRDAEGNLNPLPSPSIDTGMGLERLAAVLQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N++ DLF LI A+ ++ G+ + +V+ DH+R+ SFLI DG+LP+ EGRGYV Sbjct: 241 HDNFETDLFTPLIDAAGEIAGVSDRR--KPSLKVVADHIRACSFLIVDGVLPSTEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG EP L+ L MG A+PEL + +E+ L E++RF + Sbjct: 299 LRRIIRRAVRHGYQLGIDEPFFYRLVDPLDAVMGEAFPELRDRREFVEKILFQEEKRFRE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ GL LLD L +++G+V FKLYDTHG P+D+ DI R L +D F Sbjct: 359 TLEDGLALLDEYLGG-NDSGVIDGEVVFKLYDTHGFPVDLTADIARERNLE-VDYQGFEA 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQR RARA S G+ G ++F GY+ L Sbjct: 417 RMAEQRERARAASRFGGA-------REEVVDAGESRFTGYETLEDV-------------- 455 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V + Q G V+ G++ VV D+TPFYAE+GGQ+GD G + +G+R Sbjct: 456 ---------GSVIGLYQDGRSVQRLQPGEEGMVVLDRTPFYAESGGQVGDRGEILANGLR 506 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D K+ E H +E G L + +D R NHSATHLLH AL I Sbjct: 507 FRVADTVKQGE-AHGHLGRLESGELGVGDQVTARVDRGTREATVRNHSATHLLHAALREI 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + PD LRFD +H + + +L+ IE VN I N PV M E+A+ Sbjct: 566 LGDHVQQKGSLVAPDRLRFDFSHYEAPSREDLERIEARVNQEILTNHPVEAAHMAYEEAV 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRV+S+ G +S LCGGTH + TG+I L I+ E+ + G+ Sbjct: 626 QVGAMALFGEKYGDTVRVISL-----GDYSQELCGGTHAARTGDIGLFKIIDETGVAGGV 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEAITG+RA + + +L LA L+V N+V +VE++ E R+ + + K + Sbjct: 681 RRIEAITGERAIGWVQEAEGRLNRLADLLRVGPDNLVMKVEQLSERTREQEKEIERLKQK 740 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + ++A V F++ + K L+ +D L+ ++ SG+I+L + E K Sbjct: 741 LATQAGRSLLDDAGEVAGVRFLATCVEG-GGKGLRDTLDQLKNQLGSGVIVLAAVQGE-K 798 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT+DL DR A DL A + GG GGGR AQ+GG + + + A+A V ++ Sbjct: 799 VQLVAGVTKDLTDRLAAGDLVNHVAAQV-GGRGGGRADFAQAGGKDPSHVNDALASVEAW 857 Query: 896 LK 897 +K Sbjct: 858 IK 859 >gi|329894416|ref|ZP_08270263.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088] gi|328923063|gb|EGG30387.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088] Length = 866 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 389/902 (43%), Positives = 537/902 (59%), Gaps = 47/902 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M V IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G E Y Sbjct: 1 MKTV-EIREAFLSYFESQGHTRVASSSLVPENDPTLLFTNAGMNQFKDTFLGSEPRDYVR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L Sbjct: 60 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWTFLTEVLGL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL++TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G Sbjct: 120 PEDRLWVTVHVSDDEAADIWIKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 178 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS +++ +RYIEIWNLVFMQF + E LPK S+DTGMGLER+A V+Q Sbjct: 179 ADVPGGPPGSENDDLDRYIEIWNLVFMQFNRDASGELHPLPKPSVDTGMGLERIAAVMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+A+ Q +N + RVI DH+RS SFLI DG++P NEGRGY Sbjct: 239 VHSNYEIDLFQALIKAAAQAVNCNNLLDN--SLRVIADHIRSCSFLIVDGVVPGNEGRGY 296 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG TEP L+ AL +MG AYPEL Q + + L E+++F Sbjct: 297 VLRRIIRRAVRHGNKLGATEPFFYKLVDALSAQMGEAYPELAQQAGRVAQVLLQEEQQFA 356 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD G+ +L+ L L EI GD+ FKLYDT+G P+D+ DI RGL +D+ ++ Sbjct: 357 KTLDNGMQILEESLEGLQGGEI-PGDIVFKLYDTYGFPVDLTNDIARERGLT-LDMAGYD 414 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ +QR+R++ + + GAT+F+GY Sbjct: 415 EAMAKQRARSQEGGKFV------VDYSKTIALEGATEFLGYSD----------------- 451 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+ I+ GE V +GQ+ VVFD+TPFYAE+GGQ GDTG G+ Sbjct: 452 ------AKASGTVEVIIVDGEKVSTLAAGQQGVVVFDRTPFYAESGGQTGDTGGLTAPGL 505 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D K+ + + +HH VE G L S+ + ID R Q+ NHSATHLLH AL Sbjct: 506 SARVLDTTKQGD-LHLHHVHVESGELAVAASVSMQIDEHLRDQIRANHSATHLLHAALRQ 564 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS +T + LRFD +HS P+T+ EL + VN + N V TR+MN ++A Sbjct: 565 VLGGHVQQKGSLVTAERLRFDFSHSAPVTADELAQLNAIVNAQVMANTEVSTRLMNMDEA 624 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + +GA AL G KY D VRV+++ S LCGGTHV TG+I + IVSES I AG Sbjct: 625 VQAGAMALFGEKYGDEVRVLAMGT---DSFSVELCGGTHVGRTGDIGVFRIVSESGIAAG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG A + + D L+ + LK NVV RV + + R+L+ + K+ Sbjct: 682 VRRIEAVTGVGALAEINSLDTALQGVCLELKAQPENVVSRVAAMRGQIRELEKQIDQLKM 741 Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 ++ ++ V ++ + D+K L+ +D ++ K+ +++L + + Sbjct: 742 KMAQAAGGELASQAIEVRGVPVLAARLDGADAKALRDAVDQMKSKLGDSVVLLASVV-DD 800 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K + V++ + DR A DL R A L GG GGGRP MAQ GG + + + V + Sbjct: 801 KIVLAAGVSKAVTDRVKAGDLMREFATRL-GGKGGGRPDMAQGGGTDVAALNDVLGAVPA 859 Query: 895 FL 896 ++ Sbjct: 860 WV 861 >gi|204928130|ref|ZP_03219330.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322452|gb|EDZ07649.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 876 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV D+TPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDRTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|330831302|ref|YP_004394254.1| alanyl-tRNA synthetase [Aeromonas veronii B565] gi|328806438|gb|AEB51637.1| Alanyl-tRNA synthetase [Aeromonas veronii B565] Length = 874 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 369/910 (40%), Positives = 548/910 (60%), Gaps = 53/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IR FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 MSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+ L Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RL +TVY D+EAF +W+K G+ AD+I+RI N DNFW+M +TGPCGPC+E Sbjct: 123 KDRLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS E+G+R+IEIWN+VFMQF +Q LP+ S+DTGMGLER+ Sbjct: 183 IFYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+ + ++ G + + RVI DH+RS +FL+ADG++P+ Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTTD--LSNQSLRVIADHIRSCAFLVADGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + R LG T+ L L +M ELI L+E LR Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVAAELIAQLPLVERVLRI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TLDRGL+LL+ L++LG +++ G+V FKLYDT+G P D+ D++ R GI Sbjct: 361 EEEQFVRTLDRGLLLLEDALANLGDAKVIPGEVVFKLYDTYGFPADLTADVVRER-EIGI 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +E+QR+RA+ S + + + + T F GY L Sbjct: 420 DEEGFKAEMEKQRARAKEASSFGVN------YNEMLKLDFETPFTGYKTL---------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V I + E V ++G + +V ++TPFYAE+GGQ+GD+G Sbjct: 464 -------------TERTRVVGIYKGVEEVSGLIAGDEAVIVLEETPFYAESGGQIGDSGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D +TD K + I +E G L + +D R+ +++NHS THLL Sbjct: 511 LKVDDGIFAVTDTLKAGKAIIHK-GYMELGTLEKGAEVEAVVDGDRRQAIALNHSVTHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL LG HV+Q GS + + +RFD +H + +T A ++ +E+ VN+ I N + T++ Sbjct: 570 HAALRQALGEHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNNQIRANHEITTQL 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A ++GA AL G KY D VRVV + G +S+ LCGGTH TG+I I++E Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA+TG+ A + E+++ A+ +K Q + +V ++ ++ + ++ Sbjct: 685 SGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQMLDKAKMMERE 744 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K +L + + +I + + D K L+ ++D L+ +++SG+++L Sbjct: 745 LEQLKAKLAAQAGNDLLGQVIEINGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG A Sbjct: 805 TCA-DGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862 Query: 889 IAGVASFLKK 898 + V S+L++ Sbjct: 863 LQSVHSWLEE 872 >gi|311694210|gb|ADP97083.1| alanyl-tRNA synthetase, class IIc [marine bacterium HP15] Length = 876 Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats. Identities = 391/912 (42%), Positives = 552/912 (60%), Gaps = 54/912 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL++F++ GH ++PSSSL+P +DPTL+FTN+GM FK++F G+E+ Y Sbjct: 1 MKTAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREERDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + Sbjct: 61 TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWTFLTGENWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L Q +L++TVY ED+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPC Sbjct: 121 LPQEKLWVTVYAEDDEAFDIWNKEIGVPADRIVRIGDNKGGRYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G + GG PGS E+G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLE Sbjct: 181 TEIFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLKLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF+ L+ A+ Q+ G + RV+ DH+RS +FLIADG++ Sbjct: 241 RITAVLQGVHSNYEIDLFQDLLAAASQILGGA--ATTEASLRVVADHIRSCAFLIADGVM 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRG+VLRRI+RRA + LG T P L ALC MG A+P+L+ ++ IE+ L Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATGPFFYKLTGALCELMGEAFPQLVSSRKQIEKVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTLD+GL LL+ ++ L EI G+ F LYDT+G P+D+ DI RGL Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETIFTLYDTYGFPVDLTNDIARERGLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + +A+E QR RARA S + G T+F GY+ + G + Sbjct: 418 -LDYEGYEKAMEGQRERARAASKFGIDYNAAGLQLE-----GKTEFTGYEHIDGHE---- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++A++ GE + A +G + VV ++TPFYAE+GGQ+GDT Sbjct: 468 -------------------KIRAVIVNGEE-KTAEAGDEAVVVLERTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G R ++TD +K+ + +H + G L + + ID+ R + NHSATH Sbjct: 508 GLLTWSGGRFKVTDTRKEGDN-HLHLGTLIEGELFPGLEVDARIDHARRERTKRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + PD LRFD +H + +T +L+ IE VN+ I +N PV T Sbjct: 567 LLHAALRKVLGEHVSQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILENSPVQT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I + E A GA AL G KY D VRV+S+ ++ +S LCGGTHVS TG+I L I Sbjct: 627 EITDMEKAQEKGAMALFGEKYGDVVRVLSMGTDN---YSVELCGGTHVSRTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEA+TG A + G + L+ A +K S+ +V+ +V++ + R+L+ Sbjct: 684 SESGISSGVRRIEAVTGMGALDWIDGTERTLREAARLVKGSRESVIEKVQQTIDRNRQLE 743 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L + + + ++ + D K L D L+ K+ G+++ Sbjct: 744 KEVDALKAKLASSAGTDLASTAVDVGGLKVVASELEGADRKALMETADQLKNKLGEGVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + ++ K +++ VT+ R A DL + A + G GGGRP MAQ GG + +K + Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRIKAGDLMKHLAAQV-DGKGGGRPDMAQGGGNDPSKLE 861 Query: 887 QAIAGVASFLKK 898 A+AGVA +++K Sbjct: 862 DALAGVAGWVEK 873 >gi|116878605|ref|YP_357817.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] gi|123756582|sp|Q3A1W0|SYA_PELCD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114843241|gb|ABA89647.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] Length = 882 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 389/908 (42%), Positives = 549/908 (60%), Gaps = 42/908 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR+ FL+FFQ +GH ++PSS+LIP NDPTL+F N+GM FK++F G+EK Y Sbjct: 1 MTGNEIRSRFLKFFQDHGHTVVPSSALIPHNDPTLLFINAGMNQFKDVFLGREKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI AW LT+E L Sbjct: 61 TSAQKCVRAGGKHNDLENVGQTARHHTFFEMLGNFSFGDYFKKEAIDHAWKFLTEEMGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++TV+ ED+EA+ +W+ G+ +++IR+ DNFWSM +TGPCGPCSEI DQGE Sbjct: 121 KDKLWVTVFREDDEAYDIWRDQQGIPEERLIRMGEKDNFWSMGDTGPCGPCSEILIDQGE 180 Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + +RY+E+WNLVFMQF + LPK SIDTGMGLER+ V+Q Sbjct: 181 SMSCGDECGIGKCDCDRYLELWNLVFMQFNRDADGTMTPLPKPSIDTGMGLERITAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD DL + +I E+++G +Y + ++ RVI DH R+++FLIADG+LP+NEGR Sbjct: 241 VQSNYDCDLLRGIIAHVEELSGKRYGDNAEHDMSMRVIADHSRATAFLIADGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG+ +P++ + M AYPE Q + + ++ E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGFADPVLYRTATFVLQSMAEAYPEPAQRADYVAKIVKIEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD GL +L + L +L GDVAFKLYDT G PLD+ DIL + ID Sbjct: 361 FIQTLDNGLRILTEEVERLKAANATVLPGDVAFKLYDTFGFPLDLTADILRGENVT-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQR +AR H G G I+ L E+ T F GY L G Sbjct: 420 DGFEACMEEQRQKAREHWKGSGEEAISGIYRQLAEEGARTDFTGYGELTG---------- 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + AI+ G+ V A +G KVE+V TPFY E+GGQ GD G Sbjct: 470 -------------QSEILAILLDGQPVSSAPAGAKVEIVTAATPFYGESGGQTGDCGTLA 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ITD +K +FVH + G L+T + LT+D + R+ ++NH+ATHLL Sbjct: 517 AGDAEVTITDTKKPLPELFVHVGEIAAGTLQTGETATLTVDRERRQATALNHTATHLLQA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS +TP+ LRFD H +++ EL+ +E VN I +N V TR M+ Sbjct: 577 ALVEVLGEHVKQAGSLVTPERLRFDFIHFSAMSAEELERVETLVNCRIRENAGVDTREMD 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A+A GA AL G KY D+VRVV V G S LCGGTH +++G+I L I+ E+ Sbjct: 637 HEQAVAEGATALFGEKYGDKVRVVRV-----GDISMELCGGTHANASGDIGLFKILQETG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG +A + Q+ L LAS +K + + R+ ++ E ++L+ Sbjct: 692 IAAGVRRIEAVTGAKALQVVRDQERTLDDLASLIKTDRPQLEARLRKLLERQKELEREIE 751 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN + +I ++ + + +D K L+ + D ++ ++ SG+++L G Sbjct: 752 SLQGKLNADQAGDLLQQATEIDGISVVCGRVDNLDGKALRELADQVRDRLSSGVLIL-GS 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + E KA +L+ VT+DL R A L + A ++GGGG GGRP +AQ+GG + D+A+A Sbjct: 811 AHEGKAGLLVAVTKDLTKRLQAGALVKQLAAMVGGGG-GGRPDLAQAGGSKPEQLDEALA 869 Query: 891 GVASFLKK 898 V + + Sbjct: 870 SVPQRISE 877 >gi|37525217|ref|NP_928561.1| alanyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii TTO1] gi|41018167|sp|Q7N7A5|SYA_PHOLL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|36784644|emb|CAE13544.1| alanyl-tRNA synthetase (alanine--tRNA ligase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 876 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 384/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGKDWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +WK G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYQTDDEAYDIWKNDVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGLE Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF+ LI VTG + +N + RVI DH+RS +FLI DG++ Sbjct: 243 RITAVLQHVNSNYEIDLFRDLITVVANVTGATDDLSNK-SLRVIADHIRSCAFLICDGVV 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + ++E+ L Sbjct: 302 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLLEVMGAAGEELKRQQAVVEQIL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L +IL+G+ AF+LYDT+G P+D+ D+ R Sbjct: 362 KTEEEQFARTLERGLQLLDDELAKLS-GDILDGETAFRLYDTYGFPVDLTADVCRERN-I 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+E QR RAR S + L + + F GYD Sbjct: 420 SVDEAGFAVAMENQRRRARE------SSGFGTDYNELIKVDERSDFSGYDH--------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N + V AI + GE V + +G++ V+ D+T FYAE+GGQ+GD+ Sbjct: 465 --------------NEQQATVTAIFRDGESVNQIQAGEEAIVILDKTAFYAESGGQVGDS 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H +E+G L ++ ID + R + +NHSATH Sbjct: 511 GILSNTNCAFCVIDTQKYG-QAIGHIGKLEKGTLSVNHNINAVIDIERRDAIRLNHSATH 569 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + + +++ +ED VN + QN PVVT Sbjct: 570 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNAEVRQNSPVVT 629 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A GA AL G KY ++VRV+S+ G S+ LCGGTH + TG+I L I+ Sbjct: 630 ELMDLETAKVKGAMALFGEKYEEQVRVLSM-----GDFSTELCGGTHANRTGDIGLFRII 684 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEAITG++A + Q + L+ +A +K ++ +V + + L+ Sbjct: 685 AESGTAAGIRRIEAITGKKAVESVHQQVDLLQDIAQLVKSDIHSLSEKVRMTLDRAKALE 744 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S ++ V + +S + K L++++D L+ ++ S II+ Sbjct: 745 KELQQLKDQQAAQESSSLASKAKEVKGVKLLVSQLSNTEPKMLRTMVDDLKNQLGSAIIV 804 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+++ VT+DL + A +L A+ + GG GGGR MAQ+GG + Sbjct: 805 L-STISDDKVSLIVGVTKDLTAKIRAGELISSVAQQI-GGKGGGRSDMAQAGGSDIEALP 862 Query: 887 QAIAGVASFL 896 A+ V ++ Sbjct: 863 SALDSVEEWV 872 >gi|188534789|ref|YP_001908586.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] gi|188029831|emb|CAO97712.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] Length = 875 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 387/893 (43%), Positives = 550/893 (61%), Gaps = 56/893 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR +FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 3 KSTAEIRQSFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT + F Sbjct: 63 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIAFAWELLTSDQWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFEIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF LI++ QVTG + + + RVI DH+RS +FLIADG++ Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQVTGAED--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFFKLVAPLIAVMGTAGEDLKRQQSQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL+RGL LLD L +L + L+G+ F+LYDT G P+D+ D+ R L Sbjct: 361 KTEEEQFAKTLERGLALLDEELENLQ-GDTLDGETVFRLYDTFGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F +A+E+QR RAR + ++ A++F GY L+ Sbjct: 420 -IDEAGFERAMEQQRQRARKA------SGFGADYNNVIHIDQASEFKGYQQLQ------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ + AI GE + +GQ+ +V D TPFYAE+GGQ+GDT Sbjct: 466 ----------------LNAAITAIFVDGESADTISAGQEGVIVLDSTPFYAESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ ++D K A H + G LR S+ +D R ++ +NHSATH Sbjct: 510 GELRGNSASFMVSDTHKYA-QAIGHSGKLAAGKLRVGDSVSAQVDEARRERIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + +T+ E++ +E+ VN + +NL + T Sbjct: 569 LLHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMTAQEIRQVEEIVNAQVRRNLSIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH + TG+I L I Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHANRTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q+E+L +A +K + N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAHLVKANNSNLNEKVRALLDHTRALE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + Q ++ + + +S+V+ K L++++D L+ ++ S II+ Sbjct: 744 KQLQQLRDQQAAQESASLSSKAVTLKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 L + + K S++ VT+DL DR A +L A + GG GGGRP MAQ+GG Sbjct: 804 LATVV-DGKVSLITGVTKDLTDRIKAGELVGELALQV-GGKGGGRPDMAQAGG 854 >gi|49475765|ref|YP_033806.1| alanyl-tRNA synthetase [Bartonella henselae str. Houston-1] gi|59798532|sp|Q6G2Z4|SYA_BARHE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49238572|emb|CAF27813.1| Alanyl-tRNA synthetase [Bartonella henselae str. Houston-1] Length = 887 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 480/910 (52%), Positives = 641/910 (70%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+TFL++FQ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNSIRSTFLDYFQLNGHKIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYKQ 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ + +LW+KISGL +KI+RI T DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PEDKLLVTVYHNDDVSTELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK++R LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSAYEDGDRFIEIWNLVFMQYEQVNKEKRVELPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI S+++TG+K G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 GHDNYDIDLFRALIAVSQEITGVKATGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM LLP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWRLLPVLIHEMGQAYPELVRAESLISETLKLEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L + + LNG++AFKLYDT+G PLD+ QD L RG +D+ +FN Sbjct: 361 KTLERGLGLLSEASTDLKEGDHLNGEIAFKLYDTYGFPLDLTQDALRCRG-ISVDVAAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q+++ARA+ G G TE IWFS++++ GAT+F+GY+ Sbjct: 420 KAMEGQKAKARANWSGSGETVTEAIWFSVRDQLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V+ GEIV++ SGQK +V +QTPFY E+GGQ+GD+G G Sbjct: 462 -----TEKSEGILTALVRDGEIVDDISSGQKAILVVNQTPFYGESGGQIGDSGTISGKNF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKKA+G+F+H V+ G R + LT+D R+++ +NHSATHLLH AL Sbjct: 517 VFEVHDTQKKADGVFIHIGEVKSGQARMSECVELTVDGVRRKKIRVNHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS ++PD LRFD +H K ++ EL+ IED N+I+ QN V TR+M +DA Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSLEELEKIEDLANEIVLQNSEVTTRLMLVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS+ S LCGGTHV TG+I L++IVSES Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNRLEKGKLKSRWSIELCGGTHVERTGDIGLIHIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG AR +L QD ++ +A LK S +V RV + E+ RKL+ Sbjct: 697 SVAAGVRRIEALTGTAARLYLSRQDARVHEIADLLKTSATDVEERVRILLEDRRKLEKEL 756 Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + + I ++FM ++ + ++LK+++D+ +KKI SG++ Sbjct: 757 NDERKKSVLSGGIVKSDQEDITIINGISFMGRVVKNISPRDLKTLVDSGKKKIGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +G+S++ K S ++ VT+DL + NAVDL R+ + +LGG GGGGRP MAQSGGP GNKAD+ Sbjct: 817 IGVSEDGKGSAVLGVTDDLTHKLNAVDLVRILSGILGGQGGGGRPDMAQSGGPKGNKADE 876 Query: 888 AIAGVASFLK 897 A+A + + L+ Sbjct: 877 ALAVLKASLE 886 >gi|315125679|ref|YP_004067682.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] gi|315014193|gb|ADT67531.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] Length = 866 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 391/903 (43%), Positives = 537/903 (59%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y Sbjct: 4 MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ L Sbjct: 64 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L +T+Y +DEEAF W GL D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 KEKLLVTIYHDDEEAFGYWANDIGLPEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P E+G+R+IEIWNLVFMQ+ +Q+ LPK S+DTGMGLER++ +LQ Sbjct: 184 HIWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMEPLPKQSVDTGMGLERISAILQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYV Sbjct: 244 HSNYEIDLFQGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGK Sbjct: 302 LRRIIRRAVRHGNKLGAKGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL +L+ LS L +++ GD+ FKLYDT+G P D+ D+ R + ID F Sbjct: 362 TLERGLAILEESLSDLT-GDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEA 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + QR A+ G + + T F GYD Sbjct: 420 CMAVQRKTAQQA------GKFGADYNDQLKSDKHTDFKGYDST----------------- 456 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S V I GE V GQ+ +V D+TPFYAE+GGQ+GD+G G Sbjct: 457 ------HYSGTVVEIFAGGEAVSLLEDGQQGIIVLDRTPFYAESGGQIGDSGTITVAGGE 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +T+ K H +G + + TID R + NH+ATH+LH AL + Sbjct: 511 FVVTNTTKLGNAF--AHHGTVQGRIGVNDKVDATIDDARRDSIKKNHTATHILHEALRQL 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HVSQ GS + PD LRFD +H + +T EL+ IE VND I +N + T +M +DA Sbjct: 569 LGEHVSQKGSLVQPDRLRFDFSHFEAVTKQELREIERVVNDEIRRNFALNTELMAIDDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+ Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A +++ Q+++L +A+ +K +V+ +V + E+ + L+ A+ + Sbjct: 684 RRIEAVTGAEAIAYVSEQEQQLADVAALVKGDNASVLEKVTALLEKSKGLEKQVAQLNDK 743 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S +I V + + +SK L+ ++D L+ KI SG+I L G++ K Sbjct: 744 LASAAGASLLDSVVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+DL + A +L A +GG G GGRP MAQ+GG A+ V ++ Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMAGQVGGKG-GGRPDMAQAGGSEPQNLTAALDSVTAW 861 Query: 896 LKK 898 L + Sbjct: 862 LTE 864 >gi|217979627|ref|YP_002363774.1| alanyl-tRNA synthetase [Methylocella silvestris BL2] gi|217505003|gb|ACK52412.1| alanyl-tRNA synthetase [Methylocella silvestris BL2] Length = 895 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 464/913 (50%), Positives = 600/913 (65%), Gaps = 40/913 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNGVNEIRAGFLDYFKKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+T+EF L Sbjct: 61 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY D+EAF LWKKI+G KIIRI ++DNFW+M +TGPCGPCSEIF+DQG Sbjct: 121 PKDRLLVTVYHTDDEAFDLWKKIAGFPDSKIIRIASSDNFWAMGDTGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG P E+G+R++E WNLVFMQFEQ ER LP+ SIDTGMGLER+A +LQ Sbjct: 181 ERLKGGPPGSPDEDGDRFLEFWNLVFMQFEQLGPGERIDLPRPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYDIDL + LI A TG+ +G +HRVI DHLR+ +FLIADG+ P+NEGRGY Sbjct: 241 VTSNYDIDLMRALIVAIAAATGVDPDGPQKASHRVIADHLRACAFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LL EPLM L+P L EMG AYPELI+A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLSAREPLMWRLVPVLSREMGQAYPELIRAESLIVETLRLEEARFI 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +LD + L + L G VAFKLYDT+G PLD+ QD L AR L +D+ FN Sbjct: 361 DTLARGLSILDEAVRDLPEGAPLPGQVAFKLYDTYGFPLDLTQDALRARSL-AVDVDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF++K++ GAT F+GY+ Sbjct: 420 TAMERQRADARRAWAGSGEAATETLWFAIKDEAGATDFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +V A+V+ G+ VE G+ ++ +QTPFYAE+GGQ+GDTG G+ Sbjct: 462 -----AEQAEGVVAALVKDGKPVERLNKGETGAIILNQTPFYAESGGQVGDTGVMSAAGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD +KK +FVH IVE G + ++L L++D+ R + NHSATHLLH +L Sbjct: 517 RFRVTDTKKKLGDLFVHEGIVEEGEITPGLALELSVDHARRSAIRANHSATHLLHESLRL 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + D LRFD TH KPI+ EL +ED N + N PVVTR+M ++A Sbjct: 577 VLGDHVAQKGSLVADDRLRFDFTHLKPISPEELTRVEDIANRAVTDNAPVVTRLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLLY 709 IASGA AL G KY D VRVV++ S LCGGTHV+ TG+I L+ Sbjct: 637 IASGARALFGEKYGDEVRVVTMGYAQDREDSGDGGANRAFSVELCGGTHVARTGDIGLIA 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SES++ AG+RRIEA T AR HL + +KL+ +A LK S+ + R+ + EE RK Sbjct: 697 ITSESAVAAGVRRIEAKTAAAARRHLNARSDKLEHIAVLLKSSEDDAEKRLAALLEERRK 756 Query: 770 LQLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L A + +L +I V F +S VD K+LKS+ D ++ + SG+ Sbjct: 757 LDRELADARKKLAMGGGEKAAAEAQEIGGVKFFGRAVSGVDLKDLKSLADEAKQTVGSGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + G+ + KA V++ VT DL++RF++V L RL+A LGG GGGGR MAQ+GGPNG Sbjct: 817 VAIAGVDSDGKAGVVVGVTADLVERFDSVALVRLAATELGGKGGGGRRDMAQAGGPNGAG 876 Query: 885 ADQAIAGVASFLK 897 D A+A +A+ L+ Sbjct: 877 VDAALAAIANGLR 889 >gi|168262064|ref|ZP_02684037.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200387922|ref|ZP_03214534.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605020|gb|EDZ03565.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205349249|gb|EDZ35880.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322614354|gb|EFY11285.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621581|gb|EFY18434.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624442|gb|EFY21275.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628773|gb|EFY25556.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633500|gb|EFY30242.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635924|gb|EFY32632.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639632|gb|EFY36317.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646815|gb|EFY43318.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650583|gb|EFY46988.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654805|gb|EFY51124.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659025|gb|EFY55278.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664408|gb|EFY60602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668343|gb|EFY64500.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673677|gb|EFY69778.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322681432|gb|EFY77464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683834|gb|EFY79844.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193777|gb|EFZ78980.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200247|gb|EFZ85329.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203250|gb|EFZ88279.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205503|gb|EFZ90468.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212791|gb|EFZ97602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216317|gb|EGA01044.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221065|gb|EGA05496.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226886|gb|EGA11068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230830|gb|EGA14948.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234819|gb|EGA18905.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238858|gb|EGA22908.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241558|gb|EGA25589.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248295|gb|EGA32231.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251121|gb|EGA34994.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255840|gb|EGA39588.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263139|gb|EGA46677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264356|gb|EGA47862.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271183|gb|EGA54611.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 876 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|168230882|ref|ZP_02655940.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471872|ref|ZP_03077856.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458236|gb|EDX47075.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334599|gb|EDZ21363.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 876 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 394/895 (44%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|254474615|ref|ZP_05088001.1| alanyl-tRNA synthetase [Ruegeria sp. R11] gi|214028858|gb|EEB69693.1| alanyl-tRNA synthetase [Ruegeria sp. R11] Length = 883 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 443/908 (48%), Positives = 584/908 (64%), Gaps = 39/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEVVSSSPLVPRNDPTLMFTNSGMVQFKNLFTGLETRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L TVY D+EAF++WKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSKLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT + G+ V+HRVI DHLRS+SFLI+DG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLISDGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL +A+ +IEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQSMIEETLLQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELADLDEGAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + ++ G T F+GY+ Sbjct: 419 SAMAEQKAKARAAWAGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G V EA +G V+VV +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEAAEGQVMALVVDGAQVSEAGAGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++++D KKA G+F+H VE G++ + L +D+ R + NHSATHLLH AL Sbjct: 516 VVRVSDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHARRSAIRSNHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS D LRFD +H+K ++ E++++E VN I QN V TRIM +DA Sbjct: 575 VLGEHVAQRGSLNADDRLRFDFSHNKALSLDEIRTVEQQVNHFIRQNSTVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ +DG S LCGGTHV TG+I ++ + Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKAPTGKGQDGQTWSLELCGGTHVKQTGDIGTFVVLGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +L GQD L A LK G+V R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAEAFQYLTGQDNLLAQAALELKAQPGDVPERIKALLDERKALQNE 754 Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K Q+ + + I F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 VSQLKQQVAMGGGAGGGVETKDIGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + A A Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGAQDA 873 Query: 889 IAGVASFL 896 + +FL Sbjct: 874 LKAAEAFL 881 >gi|78485931|ref|YP_391856.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] gi|123555227|sp|Q31F91|SYA_THICR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78364217|gb|ABB42182.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] Length = 864 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 382/901 (42%), Positives = 541/901 (60%), Gaps = 47/901 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF K GH + SS ++P NDPTL+FTN+GMV FK F GQE Y+ Sbjct: 1 MTSAELRKAFLDFFVKQGHTAVHSSPVVPGNDPTLLFTNAGMVQFKETFLGQETREYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW LT+E L Sbjct: 61 TSVQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWTFLTEELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+ITV++ED EA +W K G+SA++ R DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 EEKLWITVFEEDREAEDIWLKEMGVSAERFSRCGAKDNFWSMGDTGPCGPCSEIFYDHGA 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG P E+G+RYIEIWNLVFMQF++ LPK S+DTGMGLER+A V+Q + Sbjct: 181 DVAGGPPGSPDEDGDRYIEIWNLVFMQFDRSEDGTLTPLPKPSVDTGMGLERLAAVMQNQ 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NNYDIDLF+ +++ + ++TG K N+ + RVI DH+RS +F++ DG+LP+NEGRGYV Sbjct: 241 HNNYDIDLFQAIVKKASELTGEKDLANS--SLRVIADHIRSCAFMVVDGVLPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG T+ L+P L +MG AYPEL++ + +E L+ E+ERF + Sbjct: 299 LRRIIRRAIRHGYKLGQTDIFFYQLVPTLVEQMGEAYPELVKEQANVERALKLEEERFAE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ +L+ ++ L +++G AFKLYDT+G PLD+ D+ R L+ +D F Q Sbjct: 359 TLENGMKILEEDIAQLS-GSVISGSTAFKLYDTYGFPLDLTADVARERNLS-VDEAGFEQ 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR+RAR+ S + + G+T FIGY+ Sbjct: 417 EMEAQRARARSASNFGAQSKNKVDY------TGSTHFIGYEQDE---------------- 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + AI VE+A GQ+ V+ +QTPFYAE+GGQ+GD G Sbjct: 455 -------AEAEIAAIFVDNVSVEKASEGQEAIVILNQTPFYAESGGQVGDQGSLTEGMNS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 D +K F+H V G + +++ ID + RR NHSATHLLH AL T+ Sbjct: 508 F-HVDNCQKQGAAFLHIGKVTAGSISVGQTILAHIDVKARRASERNHSATHLLHAALRTV 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+HV Q GS + P+ LRFD +H +PI++ +L IE VN I N V+ M+ E A Sbjct: 567 LGTHVGQKGSLVQPERLRFDFSHFEPISAEQLLEIEQLVNHNIMLNAQVMMEEMDIEAAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY D VRVV + G S LCGGTHV+ TGEI I SES I +G+ Sbjct: 627 AKGAMALFGEKYGDVVRVVDM-----GDFSIELCGGTHVNWTGEIGPFRITSESGIASGV 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A + ++ L ++A+ LK + V +V ++ E ++L+ + + + Sbjct: 682 RRIEAVTGEAAWQTIYDMEKSLLNIAANLKTDKPQVESKVAQLVTEQKELEKQLKQLQSK 741 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S ++ VN ++ + D L+ +D L+ K++ I+L + + K Sbjct: 742 LASSQGDDLASSVTEVNGVNVLAAELEGADVNTLRETLDKLRDKLEPAAIVLAAVDGD-K 800 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ V++ + A +L A+ + GG GGGRP MAQ+GG + +K +A+A V + Sbjct: 801 VSLVAGVSKSITGNVKAGELVNHVAQQV-GGKGGGRPDMAQAGGKDPSKLKEALASVKEW 859 Query: 896 L 896 + Sbjct: 860 V 860 >gi|16761603|ref|NP_457220.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143087|ref|NP_806429.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052376|ref|ZP_03345254.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426121|ref|ZP_03358871.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213579902|ref|ZP_03361728.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622611|ref|ZP_03375394.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213852307|ref|ZP_03381839.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289824467|ref|ZP_06544043.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20532252|sp|Q8Z4D5|SYA_SALTI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|25293091|pir||AF0843 alanine-tRNA ligase (EC 6.1.1.7) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503904|emb|CAD05933.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138720|gb|AAO70289.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 876 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|168820492|ref|ZP_02832492.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342835|gb|EDZ29599.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087230|emb|CBY96995.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 876 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|238909593|ref|ZP_04653430.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 876 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|330863734|emb|CBX73834.1| alanyl-tRNA synthetase [Yersinia enterocolitica W22703] Length = 875 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 391/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + +L A+QF GYD + Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYDHV-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDT Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + G LR S+ ID R ++ +NHSATH Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLAHGTLRVNHSIDAQIDAARRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L I+ + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG N Sbjct: 804 LATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 SALASVEAWV 871 >gi|307546333|ref|YP_003898812.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581] gi|307218357|emb|CBV43627.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581] Length = 868 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 382/904 (42%), Positives = 536/904 (59%), Gaps = 47/904 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F++ GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++ Y Sbjct: 1 MKSADIRQAFLSYFEERGHSIVPSSSLVPDNDPTLLFTNAGMVPFKDVFLGRDPRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L Sbjct: 61 TSAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWNFLTEVLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++TV+ D+EA ++WK G+ ++ R+ DNFW M +TGPCGP SE+FFD G Sbjct: 121 REKLWVTVHVSDDEAERIWKDEVGIDPERFSRL-DEDNFWQMGDTGPCGPSSEVFFDHGP 179 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS E+G+RYIE+WNLVFMQ+++ LPK SIDTGMGLER+A V+Q Sbjct: 180 EVWGGPPGSPEEDGDRYIEVWNLVFMQYDRDAAGNMNPLPKPSIDTGMGLERIAAVMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF++L+ A+ + TG + + RVI DH+RS +FL+ADG+LP+NEGRGYV Sbjct: 240 HSNYEIDLFQNLLAAAAEATGHDD--TSAPSLRVIADHIRSCAFLVADGVLPSNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG L+ AL EMG AYPEL +A+ IE L E+E+F + Sbjct: 298 LRRIIRRAVRHGHKLGAQGCFFHKLVAALDAEMGEAYPELREARDQIERVLLKEEEQFAR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ LL L L + L G+ FKLYDT+G P D+ D+ RG +D F + Sbjct: 358 TLEHGMGLLGEALDALE-GDTLPGETVFKLYDTYGFPFDLTADVCRERG-VSLDEAGFER 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 LE QR RARA S + + E G T F GYD L Sbjct: 416 ELEAQRERARAASQFG------VDYGAALELEGQTDFTGYDRLEDR-------------- 455 Query: 481 PIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A+V + G + + Q+ VV D+TPFY E+GGQ+GDTG +G Sbjct: 456 ---------ATVVALVDEQGNALARLEAEQRGVVVLDRTPFYGESGGQVGDTGYLELEGG 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R + D QK+A +H + G L S+ +D R NHSATHLLH AL Sbjct: 507 RFLVEDTQKQAGH-HLHQGRLLEGELEVGASVTPRVDPSLRAATVRNHSATHLLHQALRM 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS +TP+ LRFD +H +P+T+ +L +E VN+ + N P M ++A Sbjct: 566 VLGDHVQQKGSLVTPERLRFDFSHFEPMTAEQLAEVERLVNEQVLANAPTRIEHMTLDEA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GAAAL KY D VRV+++ +D S LCGGTHV+ +G+I +IV+E+ I +G Sbjct: 626 KEKGAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCCHIVAEAGIASG 682 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEAITG+ A ++ Q+ ++ + LK V RV + E R+L+ + K Sbjct: 683 VRRIEAITGEGALAYFREQEARVARIGERLKAKPEQVEERVTSLVERNRELEKELERLKA 742 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 +L S H++ + ++ + V KEL+ ++D L+ K+ SG+++L ++ Sbjct: 743 KLASAAGSDMLGEAHEVKGIKVLAKRLEGVSGKELRGLLDQLKNKLGSGVVVLGVGDEQA 802 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S++ VT+DL R A +L A + GG GGGRP MAQ+GG + A+ V Sbjct: 803 GKVSLIAGVTDDLTGRIKAGELVNHVASQV-GGKGGGRPDMAQAGGSDVPALPGALDSVP 861 Query: 894 SFLK 897 +++ Sbjct: 862 VWVE 865 >gi|167836924|ref|ZP_02463807.1| alanyl-tRNA synthetase [Burkholderia thailandensis MSMB43] Length = 854 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 380/894 (42%), Positives = 533/894 (59%), Gaps = 55/894 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y Sbjct: 1 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 61 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTAVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPQEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHRLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 359 EEERFFETIEHGMSILEAALADLEAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFRATQG-------LEYTGAKTTFHGYEEIAFDD---- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ +G V E +G+ VV D TPFYAE+GGQ+GD Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G+L+ + ID R + + NHSATH Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRGEIDAGRRARTARNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +ED VN+ + N P + Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEDIVNEQVLANAPGIV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M +DA+ GA AL G KY D VRV+ + S LCGGTHV TG+I L IV Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L+ Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L ++ V+ ++ + D+K L+ +D L+ K++S I+ Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 L + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGT 854 >gi|85374371|ref|YP_458433.1| alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594] gi|122544241|sp|Q2N9K5|SYA_ERYLH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|84787454|gb|ABC63636.1| AlaS, alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594] Length = 887 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 438/907 (48%), Positives = 589/907 (64%), Gaps = 36/907 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR +FL++F GH + S+ L+P NDPTLMF N+GMVPFKN+FTG E P Sbjct: 1 MQSTNDIRRSFLDYFTGAGHAEIASAPLVPYNDPTLMFVNAGMVPFKNVFTGLETPPAPT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+ AW LLT+E+ + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIEHAWTLLTREWGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL TVY D+EA+ W+KI+GL ++IIRI T DNFW+M + GPCGPCSEIFFD G Sbjct: 121 DAARLTATVYHTDDEAYDFWRKIAGLPEERIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++E+WNLVFMQ EQ + LP +IDTGMGLER+A V+Q Sbjct: 181 DHIFGGPPGSPEEDGDRFVEVWNLVFMQHEQTGGEITGDLPNKNIDTGMGLERIAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI ASE +TG+K EG+ +HRVI DHLRS+SFLIADG+LP++EGRGY Sbjct: 241 VHDNYDTDTFKELIGASEGLTGVKAEGDQAASHRVIADHLRSTSFLIADGVLPSSEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +EPLM L+PAL TEMG AYPEL + + LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVTEMGQAYPELTRGQALIEETLEREEARFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD + + + L+G+ AFKLYDT+G P D+ +D L RG +D F Sbjct: 361 QTLEKGLRLLDDATGDMSEGDTLDGETAFKLYDTYGFPYDLTEDALRPRG-IAVDETGFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ARA G G ++WF + E+ GAT+F GY G Sbjct: 420 SAMQRQKDAARAAWKGSGQAADSEVWFDIAEREGATEFTGYTSTSG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A+V+ G+ V+ A +G +V ++ +QTPFY E+GGQ GD G Sbjct: 466 ---------EGRVVALVKNGKEVDSASAGDEVVILTNQTPFYGESGGQTGDAGTMSTPDG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++++TD K + H A ++ G + +L L +D R ++ NHSATHL+H AL Sbjct: 517 VKVEVTDTGKPLGRLHTHQAKIQSGTVLKGDTLHLDVDVDRRDRVRANHSATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + D LRFD +H KP++ ++ +IE VN+ I N V TR+M+ +D Sbjct: 577 NRLGEHVTQKGSLVAEDRLRFDFSHPKPLSEDDIAAIEAEVNEEIRANETVTTRLMSPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+ +GA AL G KY + VRV+S+ ++G +S LCGGTHV +TG+I L I+SES++ Sbjct: 637 AVDAGALALFGEKYGEEVRVLSMGRRSKEGRNYSVELCGGTHVRATGDIQLFRIISESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+TG AR L+ ++E LKS AS L+ + V RV + +E + L+ A Sbjct: 697 SSGVRRIEALTGDAARQWLVRREEALKSAASALRTNPEEVAERVAALLDERKALEKELAD 756 Query: 777 RKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + QL V I DV F +I+ ++ K+L+ ++D ++++ SGI + Sbjct: 757 ARKQLALGGGGSQVAQSQDETIGDVTFSGQVINGLNPKDLRGLLDEAKQRMGSGIAAICA 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + E KA+ VT+DL DR+NAVDL R +VLGG GGGGRP MAQ GGP+G KA+ A+ Sbjct: 817 V-NEGKAAFAAAVTDDLTDRYNAVDLVRAGVEVLGGKGGGGRPDMAQGGGPDGLKAEAAL 875 Query: 890 AGVASFL 896 V L Sbjct: 876 NAVRERL 882 >gi|319407395|emb|CBI81046.1| Alanyl-tRNA synthetase [Bartonella sp. 1-1C] Length = 887 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 476/910 (52%), Positives = 629/910 (69%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+ FL++F +NGHE+L SS LIP NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNSIRSAFLDYFHRNGHEILSSSPLIPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 Q +L +TVY D A +LW+KISGL +KIIRI TNDNFWSM +TGPCGPCSEIF+D G Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS +E+G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI S+++TG++ G + +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFCKLIHTSQEITGIEATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM LLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMEKLLPVLVREMGQAYPELVRAESLISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ L + + L+G+VAFKLYDT+G PLD+ QD L RG +DI +F Sbjct: 361 KTLERGLSLLNEASIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDIDAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE IWFS+++K G T+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGITEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ A+V GEIV+ SGQ +V +QTPFYAE+GGQ+GD+G G+ Sbjct: 462 -----AEKAEGVITALVCDGEIVDHISSGQDAVLVVNQTPFYAESGGQVGDSGIISGESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q+K +GIF+H V+ G + + L +D + RR++ NHSATHLLH AL Sbjct: 517 VFEVRDTQRKGDGIFIHIGEVKSGRAKISDCVELIVDSERRRKIRANHSATHLLHEALRC 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS ++P LRFD +H KPI+S ELK +ED NDI+ QN V+TR+M +DA Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVITRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ S LCGGTHV TG+I L++IV+ES Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPIELKKHWSIELCGGTHVQRTGDIGLIHIVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +G+RRIEA+TG AR +L QD+++ +ASFLK S N+ R+ + ++ RK + Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756 Query: 775 AKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + L + I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NNTRKNVFLNGGALQGKKEEITIINGISFMGRVLRNIAVRDLKTLVDSGKKQIKSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + IS++ K S ++ VT+DL++ NAVDL R+ + VLGG GGGGRP MAQ+GG G+KAD+ Sbjct: 817 ISISEDGKGSAVVGVTDDLINILNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876 Query: 888 AIAGVASFLK 897 AI + +FLK Sbjct: 877 AITALKAFLK 886 >gi|212634216|ref|YP_002310741.1| alanyl-tRNA synthetase [Shewanella piezotolerans WP3] gi|212555700|gb|ACJ28154.1| Alanyl-tRNA synthetase [Shewanella piezotolerans WP3] Length = 874 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 377/907 (41%), Positives = 548/907 (60%), Gaps = 54/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ LTKE L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNFLTKELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D EA+ +W K G++ + IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYETDNEAYDIWSKKVGVAPENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG P E+G+R+IEIWN+VFMQ+ +Q+ LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGAMNPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T L+P L MG A L+ + ++E++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDNALSGLK-GDVLDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G E + + + F+GY L Sbjct: 420 EAGFKTAMAEQRSRAQAA------GQFETDYNEGLKIDEQSGFVGYQEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI + GE V+ G + +V + TPFY E+GGQ GD G Sbjct: 463 ------------NNQATVTAIYKAGEPVDALNVGDEAVIVLNNTPFYGESGGQCGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + DGI Q+ D QK H + G + S+ +D + R + +NHS THLLH Sbjct: 511 LADGIEYQVADTQKYG-QAIGHIGKLAEGSIVVGQSIATNVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + ++ELK +E+ VN I +N + +M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKASELKEVEELVNTQIRRNHELKAEVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A GA AL G KY+ VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DIEQAKEKGAMALFGEKYDAEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q L+ A+ LK +V+ +++ ++ + L+ Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQASLEEAAALLKGDSASVITKLKAQLDKSKALEKEL 744 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L ++ + + + VD+ L+ + D L++K++SGI++L G Sbjct: 745 AQLKDKLAAATSADLAGEAVEVNGIKVLVKQLEGVDAGSLRGLQDELKQKLKSGIVVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ + K +++ VT+DL + A +L A + GG GGGRP MAQ+GG A+ Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLKGAL 862 Query: 890 AGVASFL 896 V ++ Sbjct: 863 DSVIPWI 869 >gi|27262306|gb|AAN87434.1| Alanyl-tRNA synthetase [Heliobacillus mobilis] Length = 883 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 392/907 (43%), Positives = 555/907 (61%), Gaps = 43/907 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FLE+F++ GH ++ SSSL+P NDPTL+FTN+GM FK++F G EK Y T Sbjct: 4 TGNRVRQLFLEYFEQKGHTVVASSSLVPHNDPTLLFTNAGMNQFKDLFLGYEKRPYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L + Sbjct: 64 TSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTDVVKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y +DEEA +LWKK G+ ++IIR+ DNFWSM +TGPCGPCSEI D+GE Sbjct: 124 DKLYATIYLDDEEAHELWKKEIGVPEERIIRLGEKDNFWSMGDTGPCGPCSEILIDRGEH 183 Query: 183 IPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + + +R++EIWNLVFMQF + + LPK SIDTGMGLER+ +VLQ+ Sbjct: 184 LRCGAEECAIGKCDCDRWLEIWNLVFMQFNRDEQGVMTPLPKPSIDTGMGLERITSVLQD 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NYD DL + LI EQ++G +Y ++ RVI DH+RS +FLI DG+LP NEGRG Sbjct: 244 VPSNYDTDLLRPLITYVEQLSGKEYHRDDRGFPFRVIADHIRSCTFLITDGVLPGNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + +++G +P M ++P + MG AYPE+ + + +++ ++ E+ERF Sbjct: 304 YVLRRILRRAVRFGKVIGIEKPFMYQIVPVVVELMGEAYPEIKEKQDFVQKVIKIEEERF 363 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL G+ + +++ + +D +L G AF LYDT+G PLD+ +DI GL +D Sbjct: 364 HETLHEGMRIAADIVAKVKEDGGGVLPGRQAFTLYDTYGFPLDLAEDIAEENGLT-VDKD 422 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+E QR RARA G +IW L K G T F GY L G Sbjct: 423 GFAAAMEAQRERARAARQDTSYGAGMEIWADLLNKLGPTAFTGYGQLSG----------- 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S + AIV E V EA G V+VV +TPFYAE+GGQ+GDTG Sbjct: 472 ------------QSQLLAIVSGPEQVAEASVGTAVQVVLAETPFYAESGGQIGDTGYIRT 519 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 D ++I D +K A G+FVH +VE G + ++ + R+ ++ +HSATHLLH A Sbjct: 520 DKAIIRIDDTKKMAGGLFVHVGVVEEGTFQAGETVTAEVTGLRRQAIARHHSATHLLHRA 579 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +T D LRFD +H P+T E K IE++VN + ++LPV Sbjct: 580 LKDVLGEHVNQAGSLVTGDRLRFDFSHFTPLTREEWKQIEESVNRQVFRSLPVEVFEATL 639 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV + G +S LCGGTH+ +T +I L +VSE I Sbjct: 640 DEAKAMGATALFGEKYGDHVRVVRM-----GDYSMELCGGTHLQNTAQIGLFKLVSEGGI 694 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RR+EA+TG+ A +L Q+E ++ LA LKV +V RVE + + R+ + + Sbjct: 695 GAGLRRLEAVTGEAALDYLNEQEEIVRGLAEKLKVPPVDVAHRVETLQSQVREKEREIEQ 754 Query: 777 RKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 +L + +I+ V ++ + D L+ + D L++K+ SG+++L + Sbjct: 755 LLARLAKYQVEDLLANREEISGVQVLAAKVQAPDMDALRQMSDLLKEKMGSGVLILGSVV 814 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K +++ T+D++ R +A +L + +AK GGGG GGRP MAQ+GG + +K +A+ Sbjct: 815 GD-KVNLVASATKDIVGRGVHAGNLIKEAAKTCGGGG-GGRPDMAQAGGKDPSKLAEALD 872 Query: 891 GVASFLK 897 LK Sbjct: 873 AAKKLLK 879 >gi|318604467|emb|CBY25965.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica Y11] Length = 875 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 391/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPCERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + +L A+QF GYD + Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYDHV-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDT Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + G LR S+ ID R ++ +NHSATH Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLAHGTLRVNHSIDAQIDVARRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAMLDRSKMLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L I+ + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG N Sbjct: 804 LATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 SALASVEAWV 871 >gi|159044191|ref|YP_001532985.1| alanyl-tRNA synthetase [Dinoroseobacter shibae DFL 12] gi|205830080|sp|A8LL20|SYA_DINSH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157911951|gb|ABV93384.1| alanyl-tRNA synthase [Dinoroseobacter shibae DFL 12] Length = 887 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 446/895 (49%), Positives = 573/895 (64%), Gaps = 41/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL FF +GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MPSLNEIRSTFLNFFGGHGHEIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRDYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EA ++WKK +GLS D+IIRI TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLVTVYHTDDEAAEIWKKHAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ R LPK SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTREPLPKPSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 SHDNYDTDLFKTLIEASAHATSVDPYGDKNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG A+PEL +A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMYRLVPALVGQMGQAFPELGRAQALIEETLMLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD ++ + + L G+ AFKLYDT+G PLD+ QD L +G A F+ Sbjct: 361 QTLDRGLKLLDEAVADVPEGGALPGETAFKLYDTYGFPLDLTQDALREKGRAVE-TEGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q+++ARA G G E IWF L E +GAT+F+GYD Sbjct: 420 AAMADQKAKARAAWAGSGETADESIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V + G+ +V +QTPFYAE+GGQ+GD+G + Sbjct: 462 -----TEVAEGQVLALVKDGAQVAQLAEGETGWMVLNQTPFYAESGGQVGDSGGYLKSNG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 I D QK+ G+F H + L+ L + +D R + NHSATHLLH AL Sbjct: 517 SGAIHDTQKR-NGLFAHKVTPKAQPLKAGDVLEMRVDPARRTAIRANHSATHLLHEALRQ 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS D LRFD +HSK +T EL+ +E VN I QN PV TRIM + A Sbjct: 576 ALGAHVAQRGSLNAADRLRFDFSHSKALTLEELQKVEAEVNAYIRQNSPVETRIMTPDAA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ G +S LCGGTHV TG+I + V Sbjct: 636 RDLGAQALFGEKYGDEVRVVSMGRQSGSGKGVSGETYSLELCGGTHVKQTGDIGVFVTVG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E++ +G+RRIEA+TG+ A ++L QD +L +A+ LK +V RV + +E + LQ Sbjct: 696 ETASSSGVRRIEALTGEDAFAYLSAQDYRLAEVAASLKAQAADVPERVRSLLDERKALQN 755 Query: 773 IHAKRKLQLNV-------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A+ + +L + +A V F++ +S V ++L S++D + ++ SG I Sbjct: 756 EVAQLRRELAMAGGGQGTAAPEAEAVAGVPFLAQSLSGVSGRDLPSLIDEHKARLGSGAI 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +L+ KA+V VT DL DR +AVDL + + LGG GGGGRP MAQ GG Sbjct: 816 LLIA-DTGGKAAVAAGVTADLTDRLSAVDLVKAAVAELGGKGGGGRPDMAQGGGK 869 >gi|16766133|ref|NP_461748.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|168245264|ref|ZP_02670196.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464053|ref|ZP_02697970.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443356|ref|YP_002042068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450006|ref|YP_002046787.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264802|ref|ZP_03164876.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|20532254|sp|Q8ZMK6|SYA_SALTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|16421372|gb|AAL21707.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194402019|gb|ACF62241.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408310|gb|ACF68529.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633250|gb|EDX51664.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243057|gb|EDY25677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205335995|gb|EDZ22759.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261247963|emb|CBG25796.1| AlaRS [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994942|gb|ACY89827.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159387|emb|CBW18905.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913845|dbj|BAJ37819.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223380|gb|EFX48446.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131178|gb|ADX18608.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 876 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|119383350|ref|YP_914406.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222] gi|205830170|sp|A1AZL6|SYA_PARDP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119373117|gb|ABL68710.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222] Length = 885 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 449/909 (49%), Positives = 589/909 (64%), Gaps = 37/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ +R+TFL +F++NGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y+ Sbjct: 1 MPSLNDVRSTFLNYFERNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLTK+F + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDGAIPFAWELLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WKK++GLS D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 PKDKLLVTVYHTDDEAADIWKKVAGLSDDRIIRIPTSDNFWQMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R+IEIWNLVFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQNEQFEDGTMRALDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRGLIEASAHATSADPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL EMG+AYPEL +A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVREMGAAYPELGRAQALIEETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 QTLDRGLRLLDDELAKLPEGANLPGEAAFKLYDTYGFPLDLTQDALREKGR-AVDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + E++GAT+F+GYD Sbjct: 420 SAMAEQKAKARAAWAGSGETKDAAIWFDIAEEHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+VQ G VEEA GQ+V++V +QTPFY EAGGQ+GDTG + Sbjct: 462 -----TEISEGQVLALVQDGAAVEEAGEGQQVQIVVNQTPFYGEAGGQVGDTGLIKTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD +K +F+H A V G ++ L++D+ R + NHSATHLLH AL Sbjct: 517 AARVTDTKKTGG-VFIHIAEVTLGTIQRGQGAQLSVDHDRRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H+K +T EL +E VND I QN PV TRIM +DA Sbjct: 576 ALGEHVAQRGSLNAPDRLRFDFSHAKAMTPEELAQVEREVNDFIRQNSPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ G +S LCGGTHV+ TG+I + + S Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGELPGSGKGTGGQTYSLELCGGTHVARTGDIGMFALTS 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E++ AGIRRIEA+TGQ A L D +L +A +K G+VV +V + +E + L Sbjct: 696 ETASAAGIRRIEALTGQAAMDELRRVDGELNEIAGIVKAQAGDVVSKVRALADERKALAN 755 Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K QL + + +I + ++ + V KEL ++D ++ ++ SG ++++ Sbjct: 756 EVAQLKRQLAMGGGSEDKPREINGIKLIARRVEGVSGKELGPLVDEMKSRLGSGAVVVLA 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + KA+V VT DL R +AV+L + + LGG GGGGRP AQ G P+ AD AI Sbjct: 816 -EADGKATVAAGVTPDLTGRISAVELVQTATAALGGKGGGGRPDRAQGGAPSLAAADSAI 874 Query: 890 AGVASFLKK 898 + V + + + Sbjct: 875 SAVETLIGE 883 >gi|120602949|ref|YP_967349.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4] gi|205830078|sp|A1VEQ6|SYA_DESVV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120563178|gb|ABM28922.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4] Length = 879 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 382/908 (42%), Positives = 534/908 (58%), Gaps = 43/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TV+ +D+EA +LW K S + A++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + +R++EIWNLVFMQ++Q +R LPK SIDTGMGLER+ V Q Sbjct: 181 EHMTCGPDCGIGKCDCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D D+F+ +IQ + + + Y ++ RVI DH R+ +F+I DGILP+NEG Sbjct: 241 GVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RL+G T+ + + MG YPEL + + +R E++ Sbjct: 301 RGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEED 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TLD+GL +L+ L+ L + GD+AF+LYDT G PLDI+ DI RG + +D Sbjct: 361 RFNRTLDKGLSMLEDELATLSASGAARVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F ++EQ+ RA+A G G + L E+ ++FIGYD L G Sbjct: 420 EDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDHLCG--------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + A++ + + VE +GQK +V ++TPFY +GGQ GD G Sbjct: 471 --------------EGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++++ D K + + VHH G + + + LT+ +R + NH+ THLL Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD LRFD TH P+T EL ++E VN +I ++P+ T Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ +DA+ GA AL G KY D VRVV++ S LCGGTH+ +TG+ L IVSE Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIA-----DESVELCGGTHLRATGQAGLFLIVSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG+RRIEA+TG A ++ Q + L++ LK G +V RVE + +E R L+ Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + Q +A V ++ + + K L+ +MD ++ K+ SGI L Sbjct: 752 MERAAAQATSGQGRNIMDEATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACLA 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K ++I V++DL RF A L + A + GG GGGRP MAQ+GG N D A Sbjct: 812 AVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV-GGSGGGRPDMAQAGGTNPAGIDAA 869 Query: 889 IAGVASFL 896 A + S + Sbjct: 870 FAKLRSLI 877 >gi|322677738|gb|EFY73801.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] Length = 876 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 392/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRF+ +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFNFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|198283180|ref|YP_002219501.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667664|ref|YP_002425409.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247701|gb|ACH83294.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519877|gb|ACK80463.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 877 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 397/904 (43%), Positives = 538/904 (59%), Gaps = 39/904 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +IR FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E Y+ Sbjct: 1 MQAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK I AW LT+ L Sbjct: 61 VSSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ITVY+ED+EA +W G+ ++ R DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PEKLWITVYEEDDEAADIWMNEIGIDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGG PGS E+G+RYIEIWNLVFMQF++ + LPK S+DTGMGLER+A VLQ Sbjct: 181 HIPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNYD DLFK LI A+ ++G Y + ++ RV+ DH+R+ SFLI DG+LPANEGRG Sbjct: 241 HNNYDTDLFKPLIAAAATISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + R LG L+ L EMGSA+PEL +A+ +E L E+ RF Sbjct: 301 YVLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL+RGL LL+ ++ L + G++ F+L DT G P+D+ DI R L +D+ + Sbjct: 361 RETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGY 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+ EQRSR+RA G G TE+++ L + T+F GY Sbjct: 420 EAAMAEQRSRSRAAWAGSGEVKTERVYHDLAMRLPVTEFTGY------------------ 461 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 T V A+++ GE V +G V+ D+TPFY E+GGQ GD G D Sbjct: 462 -----STCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSDD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +TD QK + VH +E G LR +V +ID RR + +HSATHLLH AL Sbjct: 517 ALFAVTDTQKPMGHLHVHLGRMESGRLRVGDMVVASIDEVARRATAAHHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILGSHV Q GS + P+ LRFD + +P+T+A+L+ IE VN I N+ TRI+ + Sbjct: 577 NILGSHVQQKGSLVNPERLRFDFSQPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA AL G KY D VRVV + G S LCGGTHV + G+I + I+SES + A Sbjct: 637 AQALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAA 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA+TG A + +E+L++ A LKV+ + R+ + E R+L+ K K Sbjct: 692 GIRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVK 751 Query: 779 -----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + V + + +D K L+ +D L+ ++ G+I+L G+ +E Sbjct: 752 RDEAARAGADLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVERE 811 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ V + L R +A +L A+ L GG GGGRP +AQ+G N D A+A Sbjct: 812 -KVALIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGNPAALDAALAAAR 869 Query: 894 SFLK 897 ++K Sbjct: 870 DWVK 873 >gi|163856313|ref|YP_001630611.1| alanyl-tRNA synthetase [Bordetella petrii DSM 12804] gi|205829993|sp|A9IK31|SYA_BORPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163260041|emb|CAP42342.1| alaS2 [Bordetella petrii] Length = 873 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 539/910 (59%), Gaps = 52/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FFQ GH ++PS+SL+P NDPTL+FTNSGMV FK++FTG+E Y Sbjct: 1 MKSSEIRQKFLQFFQSKGHTIVPSASLVPGNDPTLLFTNSGMVQFKDVFTGKETRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED++A+ +W G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYQEDDQAYDIWATEVGVPRERIIRIGDNKGSRYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+ Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ + TG+ + +VI DH+R+ +FLI DG++P+ Sbjct: 241 AAVLQGVHSNYEIDLFQNLIRAAARETGVT--NLEDNSLKVIADHIRACAFLIVDGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL QA + + L+ Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFYKLVPDLVAEMGQAYPELTQAAERVAQVLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TL+ G+ +LDG L+ + L+G F LYDT+G P+D+ DI R + Sbjct: 359 EEERFGETLEHGMKILDGALAGVPAGGQLDGTTLFTLYDTYGFPVDLTADICRERN-VEV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F+ A+ QR +ARA + L + T+F GY+ L Sbjct: 418 DMAGFDAAMARQRDQARAAGKFKMAEG-------LSYEGADTRFEGYEKLELDGV----- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ G VE +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 466 -----------------KVAALYVDGTQVERVQAGQHAVVVLDATPFYAESGGQVGDTGL 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G R + D K G+F HH ++E G L +L+ +D R + NHSATHL+ Sbjct: 509 LESGGARFAVADTLKIQAGVFGHHGVLESGSLAVGDTLLARVDAVRRARTVRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD H P+++ ++ +E VN + N P R+ Sbjct: 569 HKALRQVLGAHVQQRGSLVDPDKTRFDFAHDAPLSAEQIAQVEAIVNAEVLANQPTQARV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + S LCGGTHVS TG+I L IV+E Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVAE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RR+EAITG A + + Q+ L A L+ + ++ R+ ++ E+ R L+ Sbjct: 683 GGVAAGVRRVEAITGDNALAWVQNQNALLLRAAGMLRTTPADLPERLAQVQEQLRTLEKD 742 Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +L ++ V ++ + ++D K L+ ++D L+ +++S +++L Sbjct: 743 LEQARGKLAASAGNDLAAKAAEVKGVKVLAASLGDIDPKALRGMVDNLKDRLKSAVVLLA 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT DL R A DL A +GG G GGRP MA GG + A Sbjct: 803 SAGGDGKISLVGGVTADLTGRVKAGDLVGFVAGQVGGKG-GGRPDMAMGGGNDAQALPAA 861 Query: 889 IAGVASFLKK 898 +A V ++ + Sbjct: 862 VASVQGWVDE 871 >gi|221133281|ref|ZP_03559586.1| alanyl-tRNA synthetase [Glaciecola sp. HTCC2999] Length = 860 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 383/896 (42%), Positives = 539/896 (60%), Gaps = 47/896 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL++F ++GH+ + SSSL+P +DPTL+FTN+GM FK++F G E+ Y Sbjct: 4 STAQIRQAFLDYFGQHGHQSVSSSSLVPHDDPTLLFTNAGMNQFKDVFLGAEQRNYSRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LTKE L Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWTFLTKELGLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY ED+EAF +W+ GL +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 EKLLVTVYAEDDEAFAIWENEIGLPPEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183 Query: 183 IPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG+PGS E+G+R+IEIWNLVFMQ+ + LPK SIDTGMGLER++ +LQ Sbjct: 184 IWGGVPGSPEEDGDRFIEIWNLVFMQYNKSADGTMEPLPKPSIDTGMGLERISAILQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+ID+F+ LI+A+ ++ G + + RVI DH+RS SFLI DG++P+NEGRGYVL Sbjct: 244 SNYEIDIFQALIKAAAEIVGT--VDLDDKSLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG + L+ AL +MG AYPEL++ +IE+ LR E+E+F +T Sbjct: 302 RRIIRRAVRHGYKLGAQDIFFYKLVSALTQQMGDAYPELVEQLPVIEKVLRVEEEQFSRT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG+ +L L+ L +++ G+V FKLYDT+G P D+ D+ ID F A Sbjct: 362 LERGMNILTQQLTELE-GDVVPGEVVFKLYDTYGFPADLTADVAREHN-VRIDETGFETA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ + + + + AT F GYD Sbjct: 420 MQ------AQRARAQQASNFGTDYNEALKITHATDFTGYDKTTDV--------------- 458 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 V I+ + V +GQK V+ D T FYAE+GGQ GD+G + + Sbjct: 459 --------GTVLEIIVENTSVTSIDAGQKGIVILDNTAFYAESGGQTGDSGVLKLNDAAV 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +K F H + + L ++V +D R + +NHSATHLLH AL +L Sbjct: 511 FTVTDTQKLANAF-GHQGIAKAKLSVGANVVTQVDDSRREAIKLNHSATHLLHAALRELL 569 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + + LRFD H + +T+ +L SIE VN I QN + T++M ++A A Sbjct: 570 GEHVAQKGSLVDDEKLRFDFAHYEAVTTEQLISIERLVNAQIRQNHELTTKLMELDEAKA 629 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY+++VRVVS+ G S+ LCGGTHVS TG+I L I SES I +G+R Sbjct: 630 SGAMALFGEKYDEKVRVVSM-----GNFSTELCGGTHVSRTGDIGLCKITSESGIASGVR 684 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEAITG+ A +++ Q L++ A+ LKV N++ R+ + + + + K QL Sbjct: 685 RIEAITGEAAINYVQEQAYLLQNAANILKVEPINLIERINNNQDLLKATEKSLNQAKQQL 744 Query: 782 NVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + S I + N + + +V+ K LK ++D L++KI SGII+L G+ + K Sbjct: 745 ASQQGSDLMNQVQVIKEHNVLVANLPDVEVKALKGMLDELKQKISSGIIVL-GVPGDGKV 803 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +++ VT DL+++ A +L A + GG GGGRP MAQ+GG + A+ V Sbjct: 804 NLIAGVTGDLINKIKAGELVNFVASQV-GGKGGGRPDMAQAGGTKPENLEHALTSV 858 >gi|332035475|gb|EGI71972.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505] Length = 866 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 396/903 (43%), Positives = 543/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y Sbjct: 4 MTTAQIRQQFLDFFASKQHQIVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ L Sbjct: 64 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 Q +L +T+Y +DEEAF+ W K GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 QEKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P E+G+R+IEIWNLVFMQ+ +Q+ LPK S+DTGMGLER++ +LQ Sbjct: 184 HIWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMLPLPKQSVDTGMGLERISAILQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYV Sbjct: 244 HSNYEIDLFQGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGK Sbjct: 302 LRRIIRRAVRHGNKLGAQGSFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL +L+ LS L +I+ GD+ FKLYDT+G P D+ D+ R + ID F + Sbjct: 362 TLERGLAILEESLSDLK-GDIIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEE 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + QR A+ G + + T+F GYD Sbjct: 420 CMAVQRKTAQQA------GKFGADYNEQLKSEKLTEFKGYDSTHH--------------- 458 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S+ V I GE V+ GQ+ VV D+TPFYAE+GGQ GDTG G Sbjct: 459 --------SATVVEIFAGGEAVQLLEDGQQGIVVLDRTPFYAESGGQTGDTGTITVAGGE 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +T+ K H + +G + + TID R + NH+ATH+LH AL + Sbjct: 511 FNVTNTTKLGNAF--AHHGIVQGRIGVNDKVDATIDNARRDSIKKNHTATHILHEALRQL 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + PD LRFD +H + +T EL+ IE VND I +N + T +M +DA Sbjct: 569 LGDHVGQKGSLVQPDRLRFDFSHFEAVTKDELREIERVVNDEIRRNFALNTELMAIDDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+ Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A +++ Q+++L +A+ +K +V+ +V + E+ + L+ A+ + Sbjct: 684 RRIEAVTGADAVAYVSEQEQQLHDVAALVKGDSASVLEKVTALLEKSKGLEKQIAQLNDK 743 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S +I V + + +SK L+ ++D L+ KI SG+I L G++ K Sbjct: 744 LASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+DL + A +L A +GG G GGRP MAQ+GG A+ V ++ Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMAGQVGGKG-GGRPDMAQAGGSEPQNLAAALDSVTAW 861 Query: 896 LKK 898 L + Sbjct: 862 LTE 864 >gi|238791374|ref|ZP_04635013.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909] gi|238729507|gb|EEQ21022.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909] Length = 875 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 391/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS+ E+G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A Q TG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAQATGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL Q + ++E L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEHVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + ++ A+QF GYD + Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNMIRVDSASQFSGYDHV-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E +G++ VV +QTPFY E+GGQ+GD Sbjct: 465 ---------------HQQATVTALFRNGEAVDEINAGEEAVVVLNQTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + +G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLTQGTLRVNHSIDAQVDVARRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +NLPV T Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+ Sbjct: 629 EVMELDTAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L +A +K N+ +V + + + L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQTDLLADVAHLVKGDSHNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + I V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861 Query: 887 QAIAGVASFL 896 A+AGV +++ Sbjct: 862 SALAGVEAWV 871 >gi|330502669|ref|YP_004379538.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01] gi|328916955|gb|AEB57786.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01] Length = 874 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 401/912 (43%), Positives = 554/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ +++IRI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGIPTERMIRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ AS + G + +V+ DH+RS SFLIADG+ Sbjct: 241 RISAVLQHVNSNYEIDLFQNLLAASAKAIGCA--NEGQASLKVVADHIRSCSFLIADGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ GDV FKLYDT+G P+D+ DI R L+ Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLASLQ-GSVIPGDVVFKLYDTYGFPVDLTADIARERELS 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + +L + T+F+GY+ G Sbjct: 418 -VDEEGFEREMEAQRERARSASAFGM------DYNALVKVDADTRFLGYEGTSG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + A+ + G V+ G++ VV DQTPFYAE+GGQ+GD Sbjct: 465 -----------------SGKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G+R + D K F+HH +V +G L S+ +D + R+ ++NHSATH Sbjct: 508 GYLEGAGVRFDVRDTTKAGG-AFLHHGVVAKGGLNVGASVKAEVDAEVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I ++K +ED VN ++ +N V T Sbjct: 567 LLHEALRIVLGDHVQQKGSLVNSQRLRFDFSHFEAIKPEQIKQLEDIVNRVVRENSAVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D+VRV+S+ GG S LCGGTHV+ TG+I L IV Sbjct: 627 EVTDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVARTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A ++L G +E+LK AS +K S+ NV+ ++ + E R+L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLE 742 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + S + ++ + +D K L +++D L+ K+ S +I+ Sbjct: 743 KELEQLKAKAASAAGNDLAGSAVDVKGTKVLAARLDGLDGKALLALVDQLKNKLGSAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G+ +E K ++ VT+DL + A DL R +A +GG G GGRP MAQ GG + K D Sbjct: 803 LGGVFEE-KVVLVAGVTQDLTSKLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGVDAGKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A A+ +++ Sbjct: 861 EALALAATLVEQ 872 >gi|168235854|ref|ZP_02660912.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737652|ref|YP_002115779.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713154|gb|ACF92375.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290777|gb|EDY30131.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 876 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELASIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|167628656|ref|YP_001679155.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] gi|205830065|sp|B0TFY7|SYA_HELMI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167591396|gb|ABZ83144.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] Length = 883 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 381/907 (42%), Positives = 552/907 (60%), Gaps = 43/907 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FLE+F++ GH ++ SSSL+P NDPTL+F+N+GM FK++F G EK Y T Sbjct: 4 TGNRVRQLFLEYFEQKGHTIVASSSLVPHNDPTLLFSNAGMNQFKDVFLGFEKRPYLRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L + Sbjct: 64 TSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRYAWEFLTDVCGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY TVY +D+EAF LW+ + GL +I+R+ DNFW+M +TGPCGPCSEI D+GE Sbjct: 124 DKLYATVYLDDDEAFALWRDMIGLPEARILRLGEKDNFWAMGDTGPCGPCSEILIDRGEH 183 Query: 183 IPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + + +R++EIWNLVFMQ+ + LP+ SIDTGMGLER+ +VLQ+ Sbjct: 184 LRCKAEECAIGKCDCDRWLEIWNLVFMQYNRDENGTMTPLPRPSIDTGMGLERVTSVLQK 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NYD DL + LI EQ+ G Y ++ RVI DH+RS +FLI DG+LP+NEGRG Sbjct: 244 VGSNYDTDLLRPLIAFVEQLCGQVYHRDDRGFPFRVIADHIRSCTFLITDGVLPSNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + ++LG +P M ++P + MG AYP++ + + + + ++ E+ERF Sbjct: 304 YVLRRILRRAVRFGKVLGIDKPFMYEIVPVVVELMGEAYPDIREKQDFVCKVIKIEEERF 363 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL G+ + +++ + ++ +L G AF LYDT+G PLD+ +DI GL +D Sbjct: 364 HETLHDGMRIAADMVAKVKQEGGNVLPGKQAFTLYDTYGFPLDLAEDIAEENGLT-VDKD 422 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F QA+E QR RARA G ++W L ++ G T F GY G Sbjct: 423 GFQQAMEAQRERARAARQDTAYGAGMELWAELLQQLGPTVFTGYGRTSG----------- 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S+VKAIV V EA +G V+VV +TPFYAE+GGQ+GD+G Sbjct: 472 ------------ESVVKAIVAGATRVTEAGAGTAVQVVLAETPFYAESGGQIGDSGLLRA 519 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +++ D +K A G+ VH +V G+ + +V ++ R ++ +HSATHL+H A Sbjct: 520 GDAVVRVEDTKKMAGGLHVHFGVVAEGVFKEGDQVVAEVESARRLAIARHHSATHLMHKA 579 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD +H P+T E IE VN + Q LPV + Sbjct: 580 LKEVLGEHVNQAGSLVTPDRLRFDFSHFSPLTRDEWNRIEAAVNRAVFQALPVEVFETSI 639 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY DRVRVV + G +S LCGGTH+ +T ++ L ++SES I Sbjct: 640 DEAKAMGATALFGEKYGDRVRVVRM-----GNYSMELCGGTHLDNTSQVGLCKLLSESGI 694 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ A ++L Q+E ++ LA LKV V RV+ + + R+ + + Sbjct: 695 GAGLRRIEAVTGEAALAYLNEQEETVRMLAEKLKVPAAEVTNRVDSLQAQLREKEREMEQ 754 Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 +L + +I V ++ + D L+S+ D L++K+ SG+++L ++ Sbjct: 755 LLSRLAKYQIDDLLAGKEEINGVTVLAAKVQAPDMDALRSMSDLLKEKLGSGVLILGAVA 814 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K +++ T+D++ R +A +L + +AKV GGGG GGRP MAQ+GG + ++ A+ Sbjct: 815 GD-KVNLVAAATKDIVGRGVHAGNLVKEAAKVCGGGG-GGRPDMAQAGGKDPSRLSDALE 872 Query: 891 GVASFLK 897 LK Sbjct: 873 AAKKLLK 879 >gi|161615724|ref|YP_001589688.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205830199|sp|A9N0C1|SYA_SALPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161365088|gb|ABX68856.1| hypothetical protein SPAB_03515 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 876 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFSVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|46579502|ref|YP_010310.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|48428505|sp|P61700|SYA_DESVH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46448916|gb|AAS95569.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|311233316|gb|ADP86170.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris RCH1] Length = 879 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 382/908 (42%), Positives = 534/908 (58%), Gaps = 43/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TV+ +D+EA +LW K S + A++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + +R++EIWNLVFMQ++Q +R LPK SIDTGMGLER+ V Q Sbjct: 181 EHMTCGPDCGIGKCDCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D D+F+ +IQ + + + Y ++ RVI DH R+ +F+I DGILP+NEG Sbjct: 241 GVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RL+G T+ + + MG YPEL + + +R E++ Sbjct: 301 RGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEED 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TLD+GL +L+ L+ L + GD+AF+LYDT G PLDI+ DI RG + +D Sbjct: 361 RFNRTLDKGLSMLEDELATLSASGAAHVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F ++EQ+ RA+A G G + L E+ ++FIGYD L G Sbjct: 420 EDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDHLCG--------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + A++ + + VE +GQK +V ++TPFY +GGQ GD G Sbjct: 471 --------------EGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++++ D K + + VHH G + + + LT+ +R + NH+ THLL Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD LRFD TH P+T EL ++E VN +I ++P+ T Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ +DA+ GA AL G KY D VRVV++ S LCGGTH+ +TG+ L IVSE Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIA-----DESVELCGGTHLRATGQAGLFLIVSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG+RRIEA+TG A ++ Q + L++ LK G +V RVE + +E R L+ Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + Q +A V ++ + + K L+ +MD ++ K+ SGI L Sbjct: 752 MERAAAQATSGQGRNIMDEATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACLA 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K ++I V++DL RF A L + A + GG GGGRP MAQ+GG N D A Sbjct: 812 AVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV-GGSGGGRPDMAQAGGTNPAGIDAA 869 Query: 889 IAGVASFL 896 A + S + Sbjct: 870 FAKLRSLI 877 >gi|227329399|ref|ZP_03833423.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 875 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 542/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYARA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG P E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLFK LI A + G + RVI DH+RS +FLIADG++ Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTD--LTNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD + +L + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 361 KTEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+ QR RAR + SL T F GY+ + Sbjct: 420 -VDEEGFEAAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V AI G V++ +G + V+ ++TPFY E+GGQ+GD Sbjct: 467 -----------------QAKVIAIYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H + RG LR S+ +D Q R ++ +NHSATH Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTRGTLRVNDSVEANVDSQRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH S TG+I L I+ Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743 Query: 772 LIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + ++ V + + VD K L++++D L+ ++ S +I+ Sbjct: 744 KELQQFKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|62181330|ref|YP_217747.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75481392|sp|Q57KU6|SYA_SALCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|62128963|gb|AAX66666.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715813|gb|EFZ07384.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 876 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|205830248|sp|A9MFZ1|SYA_SALAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 876 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 392/910 (43%), Positives = 556/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+ +W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYGIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATD--LSNKSLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERDIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFETAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVNGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ + +D R ++ +NHSATH Sbjct: 510 GELKGVGFTFAVNDTQKYG-QAIGHLGKLSAGALKVGDVVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGAHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM E A A GA AL G KY++RVRV+S+ G S+ LCGGTH TG+I L I+ Sbjct: 629 HIMELEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHARRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERSRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESASLSSKAVDLNGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ R A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTGRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVQDWV 871 >gi|319405869|emb|CBI79501.1| Alanyl-tRNA synthetase [Bartonella sp. AR 15-3] Length = 889 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 474/912 (51%), Positives = 635/912 (69%), Gaps = 39/912 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F++NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNNIRSTFLDYFRRNGHEIISSSPLVPRNDPTLMFTNAGMVQFKNVFTGFEQCPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L ITVY D A +LW+KISGL +KIIRITTNDNFWSM +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLITVYHTDNIAAELWRKISGLPNEKIIRITTNDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 GEIFGGPPGSADEDGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF LI AS+++TG+K G I +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDTDLFCKLISASQEITGVKATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM LLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKELLMEQLLPVLIREMGQAYPELVRAEALISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + +G+VAFKLYDT+G PLD+ QD L RG +DI +F Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDIEAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE IWFS++++ G T+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASVTETIWFSIRDQVGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A++ GEIV+ SGQ +V +QTPFYAE+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGVITALICDGEIVDHISSGQDAMLVVNQTPFYAESGGQIGDSGVISGESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q++ +G+F+H V+ G + + LT+D + RR++ NHSATHLLH AL Sbjct: 517 VFEVRDTQRRGDGVFIHIGKVKSGQAKISDCVELTVDSERRRKIRANHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS ++P LRFD +H KPI+S ELK +ED NDI+ QN V TR+M +DA Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSQVTTRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714 + GA AL G KY D VRVVS+ S LCGGTHV TG+I L++IV+ES Sbjct: 637 VFEGAVALFGEKYGDEVRVVSMGERCEPIALKKHWSIELCGGTHVQRTGDIGLIHIVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +G+RRIEA+TG AR +L QD+++ +ASFLK+S N+ RV ++ + RK + Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEIASFLKISPANLEERVRNLFNDRRKFEKEL 756 Query: 775 AK---------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + LQ +++ I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NNTRKNVVLNGKALQGRKGEITTININGISFMGGVLRNIAIRDLKTLVDSGKKQIKSGVV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V +S++ K S ++ VT+DL++ NAVDL R+ + VLGG GGGGRP MAQ+GG G+KA Sbjct: 817 AFVSVSEDGKGSAVVGVTDDLINMLNAVDLVRIVSVVLGGQGGGGRPDMAQAGGSKGDKA 876 Query: 886 DQAIAGVASFLK 897 ++AI + +FLK Sbjct: 877 EEAITALKAFLK 888 >gi|121601991|ref|YP_989027.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583] gi|205829988|sp|A1USS4|SYA_BARBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120614168|gb|ABM44769.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583] Length = 886 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 471/909 (51%), Positives = 631/909 (69%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKHSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY +D+ A LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ +K++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS+++ G+K G+ +HRVI DHLRSS+FLIADGI+P+NEGRGY Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG + LM L+P L +EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ +HL + + NG+VAFKLYDT+G PLD+ QD L RG +D+ +F+ Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ Q++ ARA+ G G TE +WFS++++ GAT+F+GY+ Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+++ GE+V+ GQK +V +QTPFY E+GGQ+GD+G G Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKK + +F+H ++ G + + L +D RR++ NHSATHLLH +L Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV Q GS ++PD LRFD +H K I+S ELK IED NDI+ QN V TR+M +DA Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRV+S+ S LCGGTHV TG+I L++I+SE+ Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+T AR +L GQD ++ +A LK S +V RV+ + +E RKL+ Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756 Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +++K+ LN ++ I ++FM ++S + K+LK+++D+ +KKI SG++ + Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S++ K S ++ VT+DL D NAVDL R+ + LGG GGGGR MAQ+GG G KAD+A Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876 Query: 889 IAGVASFLK 897 + + LK Sbjct: 877 LVALKDSLK 885 >gi|119899070|ref|YP_934283.1| alanyl-tRNA synthetase [Azoarcus sp. BH72] gi|205829981|sp|A1K991|SYA_AZOSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119671483|emb|CAL95396.1| AlaS protein [Azoarcus sp. BH72] Length = 885 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 376/920 (40%), Positives = 522/920 (56%), Gaps = 64/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSAEIRAKFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTEVFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ A+++IRI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLRSSS 283 + VLQ NY+IDLFK LI ++ + G +++V+ DH+R+ S Sbjct: 241 SAVLQGVHANYEIDLFKSLISSAMRAVGTAEALVERARDSMTNTISPSYKVLADHIRACS 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 FLIADG++P NEGRGYVLRRI+RRA+ + LG ++P L EMG AYPEL Sbjct: 301 FLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGEAYPELKAG 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIM 401 + + + LR E+ERF T++ G+ +++G L+ + + + NGD AFKL+DT+G PLD+ Sbjct: 361 ERRVADVLRQEEERFFATIENGMAIVEGELAAMATAGNTVFNGDTAFKLHDTYGFPLDLT 420 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 DI R + + A+ Q+ +ARA + +L AT F GYD Sbjct: 421 ADICREREVTVDAAAF-DAAMARQKEQARAAGKFKMAA-------NLDYDGPATTFHGYD 472 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L + A+ + G V E V G VV D TPFY Sbjct: 473 KLE-----------------------AKGNILALYKDGVAVNELVEGDLGVVVLDHTPFY 509 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ GD G G + D K +F HH +V+ G L + +D R Sbjct: 510 AESGGQAGDRGELKGAAGIFGVEDTLKIQASVFGHHGVVKTGKLAVGQGVAARVDTAARA 569 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NHS THL+H AL +LG HV Q GS + PD RFD H+ P+++ E++ +E+ VN Sbjct: 570 ATARNHSVTHLMHKALREVLGPHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNR 629 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I N +M +DA SGA L G KY D VRV+S+ S LCGGTHV+ Sbjct: 630 EILANAATEAAVMALDDAQKSGAMMLFGEKYGDEVRVLSIGS------SKELCGGTHVAR 683 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I L IV E + AG+RR+EA+TG+ A + Q+ +++ +++ LKV V RV Sbjct: 684 TGDIGLFKIVVEGGVAAGVRRVEAVTGENALRYTQEQERRVQGVSALLKVQPDEVAERVA 743 Query: 762 EIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 I + R L+ A+ K +L + ++ + D L+ MD L Sbjct: 744 GILDNVRALEKELARLKSKLAASQGEDLVAQAVDVGGAKLLAATLEGADVPTLRETMDKL 803 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + K++S I+L ++ + K S++ VT DL + A +L A+ + GG GGGRP MAQ Sbjct: 804 KDKLKSAAIVLASVA-DGKVSLIAGVTADLTGKVKAGELVNFVAQQV-GGKGGGRPDMAQ 861 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG +K A+A V +++ Sbjct: 862 AGGTEPDKLPAALAAVQAWV 881 >gi|326387205|ref|ZP_08208815.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370] gi|326208386|gb|EGD59193.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370] Length = 880 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 446/890 (50%), Positives = 583/890 (65%), Gaps = 32/890 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGHE++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E Sbjct: 1 MTSTNEIRRSFLDYFGSNGHEVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAQPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+E+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EAF LW+KI+GLS D+IIRI T DNFW+M + GPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDEAFGLWQKIAGLSDDRIIRIATKDNFWAMGDDGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQFEQ + LPK SIDTGMGLER+A VLQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQFEQTAGEITGNLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDID F+ LI ASE +TG+K + + +HRVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 EHDNYDIDTFRALIAASENLTGVKADDAHRASHRVIADHLRSSSFLLADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+P+L TEMG+AYPEL +A+ LIEE L E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPSLITEMGAAYPELGRARALIEEVLEREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL LLD + + L G+ AF+LYDT+G P D+ +D L ARG +D F+ Sbjct: 361 QTLANGLKLLDEATDGMDEGAKLPGETAFRLYDTYGFPYDLTEDALRARG-ISVDRDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G ++WF + E+ GAT+F GY G Sbjct: 420 AAMAQQKAAARAAWKGSGQTADSEVWFDIAERVGATEFTGYTATTG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A+V+ G+ V EA +G V V+ +QTPFY E+GGQ GDTG G G+ Sbjct: 466 ---------EAQVVALVKDGKEVTEANAGDAVTVITNQTPFYGESGGQQGDTGTITGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L + D QK + H VE G +R + L ID R L NHSATHLLH AL Sbjct: 517 VLAVGDTQKPLGKLHAHQGTVETGTIRVGDLVRLAIDTARRDALRANHSATHLLHQALRN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS + + LRFD + +++ ++ IE VN I N PVVTR+M +DA Sbjct: 577 RLGQHVMQKGSLVAGERLRFDFSQPTALSAEDIAVIEAEVNAQIRGNSPVVTRLMTPDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I +GA AL G KY D VRV+S+ +S LCGGTHV + G+I + IVSES++ +G Sbjct: 637 IEAGAMALFGEKYGDEVRVLSMGGSSDATYSVELCGGTHVRALGDIGVFRIVSESAVSSG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG+ AR L+G+++ LK A L+ + V RV + EE RKL+ A+ K Sbjct: 697 VRRIEALTGEAARQWLVGREDALKHTAGLLRTTPEEVETRVAALIEERRKLERELAEAKK 756 Query: 780 QLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L + + +I + F ++ +D KEL+ ++D ++++ SG+ +V + E Sbjct: 757 ALALGGGGASPADADEEIGGIKFSGQVLEGLDPKELRGLLDQAKQRLGSGVAAVVAV-NE 815 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 KAS+ VT+DL+ + +AVDL R LGG GGGGRP MAQ GGP+G+ Sbjct: 816 GKASIAAAVTDDLVGKVSAVDLVRAGVAALGGKGGGGRPDMAQGGGPDGS 865 >gi|254786776|ref|YP_003074205.1| alanine--tRNA ligase [Teredinibacter turnerae T7901] gi|237686567|gb|ACR13831.1| alanine--tRNA ligase [Teredinibacter turnerae T7901] Length = 866 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 380/903 (42%), Positives = 533/903 (59%), Gaps = 47/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL++F + GHE++ SSSL+P NDPTL+FTN+GMV FK++F G EK Y Sbjct: 1 MMKSAEIRDAFLKYFAEQGHEVVNSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ W+ LTK L Sbjct: 61 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRFGWEFLTKVLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++TV+ D+EA +W K G+SAD+ R+ DNFW M +TGPCGP SEIF+D G Sbjct: 121 PAERLWVTVHISDDEAADIWLKEVGVSADRFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 179 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS +++ +RYIEIWNLVFMQFE+Q+ E LP+ S+DTGMGLER+A V+Q Sbjct: 180 ADVPGGPPGSENDDLDRYIEIWNLVFMQFERQSNGELVPLPRPSVDTGMGLERIAAVMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ L++A+ TG + RVI DH+RS SFL+ DG+LP+NEGRGY Sbjct: 240 VHSNYEIDLFQALLRAAATATGTSD--LENKSLRVIADHIRSCSFLVCDGVLPSNEGRGY 297 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA+ + LG T L+ AL +MG AYPEL Q + IE+ L +E+++F Sbjct: 298 VLRRIMRRAIRHGHKLGQTNSFFHTLVAALVEQMGDAYPELRQHQAQIEKVLLTEEQQFA 357 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD+G+ +L+ L+ L ++ G+ F LYDT+G P+D+ DI R L +D+ + Sbjct: 358 KTLDKGMAILEDSLAGLD-GSVIPGETVFTLYDTYGFPVDLTNDIARERSLT-LDLDGYE 415 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +E Q++RARA SG+ + + + G T+F+GY L Sbjct: 416 SLMEAQKARARA------SGSFKMDYTANLSLEGTTEFLGYTHLE--------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+ + GE V + G + +V +TPFY E+GGQ GDTG Sbjct: 455 --------ESGKVQALFKDGEKVSQLNEGDEGVIVLSRTPFYGESGGQAGDTGYISTVAG 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++ D QK +H ++ G + + + +D R ++NHSATHLLH AL Sbjct: 507 KFEVRDCQKSGSN-HLHIGVMLSGSIAEQNEVTACVDQSVRAATALNHSATHLLHAALRK 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + LRFD +H + + AELK IE VN I +N V T + + + A Sbjct: 566 VLGDHVTQKGSLVDSQRLRFDFSHFEAVKPAELKQIERIVNGEIRRNTVVTTELCDMDTA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA L G KY D VRV+S+ S LCGGTHVS TG+I L+ I+SE I +G Sbjct: 626 KERGAMMLFGEKYGDEVRVLSMGE----GFSVELCGGTHVSRTGDIGLMRIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG+ A + Q E L ++A LK ++ ++E++ + L+ A Sbjct: 682 VRRIEAVTGEHALVAVESQAELLSTVAGALKSGAESLPEKLEQLLARNKMLEKELAAANS 741 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L +I + + + VD+K L S +D L+ K+ S I+L + E Sbjct: 742 KLAAASADEWLGEAQEIEGLKLLVKSLEGVDAKSLLSTLDQLKNKLGSCAIILASV-NEG 800 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++ V+ D R A DL + A + GG GGGRP MAQ G + A+A V + Sbjct: 801 KIALAAGVSADSTKRLRAGDLLKYVATQV-GGKGGGRPDMAQGAGSDVAALPGALASVPA 859 Query: 895 FLK 897 +++ Sbjct: 860 WVQ 862 >gi|217969991|ref|YP_002355225.1| alanyl-tRNA synthetase [Thauera sp. MZ1T] gi|217507318|gb|ACK54329.1| alanyl-tRNA synthetase [Thauera sp. MZ1T] Length = 873 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 379/910 (41%), Positives = 531/910 (58%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSAEIRDAFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G+ A+++IRI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS E+G+RYIEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGDHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + VLQ NY+IDLF+ LI+A+ + T + + +V+ DH+R+ SFLIADG++P Sbjct: 241 SAVLQHVHANYEIDLFQALIKAAARETCSADM--DSPSLKVLADHIRACSFLIADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L EMGSAYPEL + I + LR Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGSAYPELKDGERRIMDVLRQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF T++ G+ +++ L+ + ++ +GD AFKL+DT G PLD+ DI R + Sbjct: 359 EEERFFATIENGMAIVEAELAAMEAAGKKVFDGDTAFKLHDTFGFPLDLTADICREREVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D ++F+ A+ Q+ +ARA + +L+ T F GY LL Sbjct: 419 -VDALAFDAAMARQKEQARAAGKFKMAA-------NLEYDGPETTFHGYTLLE------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G V E + G+ VV D TPFYAE+GGQ+GD Sbjct: 464 ----------------EKGNILALYKDGVPVNELLEGEMGVVVLDHTPFYAESGGQVGDR 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK +F HH +V G L +V +D R + NHS TH Sbjct: 508 GELRAAAGIFGVEDTQKIQAAVFGHHGVVRTGKLAVGQGVVARVDVAARAATARNHSVTH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + PD RFD H+ P+++ E++ +E+ VN I N Sbjct: 568 LMHKALREVLGAHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNREILANAATQA 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M E A SGA L G KY D VRV+S+ S LCGGTHV+ TG+I L IV Sbjct: 628 EVMALEAAQKSGAMMLFGEKYADEVRVLSIG------TSKELCGGTHVARTGDIGLFKIV 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AGIRR+EAITG+ A + Q+ +++ +++ LKV V RV I + R L+ Sbjct: 682 GEGGVAAGIRRVEAITGENALRYAQEQERRVQGMSALLKVQPDEVAERVAGILDNVRALE 741 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ K +L +I + ++ ++ D+ L+ MD L+ K++S I+ Sbjct: 742 KELARLKSKLAASQGDELVSQAVEIKGIRVLAALLEGADAPTLRDTMDKLKDKLKSAAIV 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 802 LAAVA-DGKVSLIAGVTADHTAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPENLA 859 Query: 887 QAIAGVASFL 896 A+AGV ++ Sbjct: 860 AALAGVKDWV 869 >gi|198245112|ref|YP_002216798.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353771|ref|YP_002227572.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858091|ref|YP_002244742.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939628|gb|ACH76961.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273552|emb|CAR38539.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709894|emb|CAR34247.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624557|gb|EGE30902.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628879|gb|EGE35222.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 876 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 557/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q + LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAEGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|167550339|ref|ZP_02344096.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324713|gb|EDZ12552.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 876 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKLSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|260773533|ref|ZP_05882449.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14] gi|260612672|gb|EEX37875.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14] Length = 860 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 380/911 (41%), Positives = 537/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTEVVKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY D+EAF +W + G+ D+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYQTDDEAFNIWHQQIGIPQDRIIRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS+ E+G+R+IEIWN+VFMQF + + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGPPGSAEEDGDRFIEIWNVVFMQFNRHADGKMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ + Q +NY+ID+F+ LI+A+ +V G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAITQGVHSNYEIDVFQTLIKAAAEVIG--YQDLANQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVAPLAEVMGSAGEELKRQHALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L + +L+GD FKLYDT+G P D+ D+ RG Sbjct: 361 IEEENFGRTLERGMAILNDALD-AVEGSVLDGDTVFKLYDTYGFPADLTNDVARERGFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+EEQR RAR +G + SL + G T+F GY + Sbjct: 419 IDEEGFEAAMEEQRQRAR------DAGNFGTDYNSLIKVDGETEFCGYSATQKM------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V A+ G+ V +G K VV + TPFYAE+GGQ GD G Sbjct: 467 -----------------SPVSALFVDGQEVSALSAGDKAIVVLETTPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK H+ +++ G+L + + +D + R +S+NHSATHL Sbjct: 510 LLRTASGVFKVEDTQKLGN-AIAHYGVMQEGVLASSDHVEALVDEKRRNAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVRAENLRFDFSHLEAMTAAEIKQVERLVNAQIRLNHVIETH 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+++VRV+S+ G S+ LCGG H S TG+I L I+S Sbjct: 629 VMDIESAKQKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASHTGDIGLFKILS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E + AGIRRIEA+TG+ A L Q K + ++ E ++ ++L+ Sbjct: 684 EGGVAAGIRRIEAVTGEAALDALETQQHKYEE--------------KLSEAMQKTKQLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + + IA V + ++ D+K L+ ++D L+ ++ SGII+L Sbjct: 730 EIQQLKDKLASQASANLIDQVKLIAGVKVLVAQLNGADNKALRGMVDELKNQLGSGIILL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT DL + A +L L A+ + GG GGGRP MAQ+GG + Sbjct: 790 GNVA-DDKVGLIAGVTNDLTAKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGSDAQALPL 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|207728244|ref|YP_002256638.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein [Ralstonia solanacearum MolK2] gi|206591490|emb|CAQ57102.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein [Ralstonia solanacearum MolK2] Length = 893 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 380/917 (41%), Positives = 535/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 14 MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 73 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 74 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 134 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G I GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 194 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 371 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ Sbjct: 372 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 431 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GYD L Sbjct: 432 E-NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLVRE 484 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+ GQ VV D TPFYAE+GG Sbjct: 485 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 522 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 523 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 582 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 583 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 643 AQTAAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 697 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 756 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K++ Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 817 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874 Query: 882 GNKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 875 PDKLPQALAGVTAWVQQ 891 >gi|148262305|ref|YP_001229011.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4] gi|205830100|sp|A5GD98|SYA_GEOUR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146395805|gb|ABQ24438.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4] Length = 876 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 382/906 (42%), Positives = 548/906 (60%), Gaps = 42/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F +FF++ GH ++ SS+LIP NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MTGKEIRAQFFKFFEERGHTVVESSNLIPRNDPTLLFTNAGMNQFKDVFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE LD Sbjct: 61 CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKELKLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA +W + G+ ++I R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 KDRLYVTVYTDDDEAADIWNRQEGVPLERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWN VFMQF + + LPK S+DTGMGLER++TV+Q Sbjct: 181 GTGCGSPTCEVGCDCDRYMEIWNNVFMQFNRDAQGNLTPLPKPSVDTGMGLERISTVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 T+NYD DL + +I+ E+++G +Y + V+ RVI DH R+ +FLI DGILP+NEGR Sbjct: 241 VTSNYDTDLLQGIIKHVEKLSGKRYRQDERDDVSMRVIADHSRAITFLICDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG+ EP + ++ A+ T MG AYPEL++ + I++ + +E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPALYRIVDAVNTMMGDAYPELLEREEYIKKVIHAEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ ++ L K+ ++ G+V FKLYDT+G P+D+ DI+ G ID Sbjct: 361 FIETLDRGLAILNEEVAALKKEGKSVVPGEVIFKLYDTYGFPVDLTADIVENEGFT-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E QR +AR + G G +I+ +L + + F+GY Sbjct: 420 DGFALCMERQRLQARENWKGSGEEGLAEIYKTLHGRGIRSAFVGYSE------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + AI+++G V EAV+G+ VEVV D TPFY +GGQ GDTG Sbjct: 467 ----------QTAYSAITAILREGAEVAEAVAGEMVEVVVDTTPFYGASGGQAGDTGVIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 L++ K + VH A+V G ++ + L + + R + NH+ATHLL Sbjct: 517 TGSAHLRVVATSKPFPDLTVHRALVTEGTVKAGDAADLRVATEVRGATARNHTATHLLQS 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS +T + LRFD TH +T EL+ +E+ VN + N V + M Sbjct: 577 ALRQVLGEHVKQAGSLVTAERLRFDFTHFSAMTVEELRRVENIVNTYVMDNADVKSLEMA 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A+ SGA AL G KY DRVRVV V G SS LCGGTHV + G+I IV E+ Sbjct: 637 ATEAMQSGATALFGEKYGDRVRVVKV-----GEVSSELCGGTHVRAAGDIGFFKIVGEAG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG A ++ +++ +S+A +K G + +V+ + ++LQ Sbjct: 692 IAAGVRRIEALTGSGALEYVQQLEDEQRSIAVLVKAEGGTALDKVDRLLARQKELQREVE 751 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN + + + ++ + D K L+ + D+L+ ++QSG+I++ + Sbjct: 752 ALQARLNASRSADLLAGARETNGIKVLAAKVEMDDPKGLRELADSLKDRLQSGVIVIGCV 811 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S KA++L+ VT+DL DR A D+ + A ++ GG GGG+P +AQ+GG D+A+ Sbjct: 812 SA-GKANLLVAVTKDLSDRLRAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEALE 869 Query: 891 GVASFL 896 + Sbjct: 870 AAYKII 875 >gi|260767196|ref|ZP_05876138.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972] gi|260617804|gb|EEX42981.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972] Length = 860 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 381/906 (42%), Positives = 538/906 (59%), Gaps = 59/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY D+EAF +W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ V G Y+ + + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L E L+G+ FKLYDT+G P D+ D+ RG Sbjct: 361 IEEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+EEQR RAR G + L + GAT+F GY +G Sbjct: 419 IDEAGFEAAMEEQRQRAREA------GHFGTDYNQLIKVEGATEFCGYSATQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + +G+ +G K +V ++TPFYAE+GGQ GD G Sbjct: 466 ----------------ESTITEMFVEGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ G+ ++ +D + R +S+NHSATHL Sbjct: 510 VLKTDAGVFHVVDTQKLGN-AIAHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + +GLRFD +H + +++AELK +E VN+ + N + T Sbjct: 569 LHAALRRVLGEHVTQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY+++VRV+S+ G S+ LCGG H SSTG+I L I S Sbjct: 629 IMDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG+ A +L Q + + ++ + + + +E + L+ Sbjct: 684 ESGIAAGIRRIEAVTGEAALDYLDAQHAQ-------FESKVADMASKAKGLEKEIQHLKD 736 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A ++ IA V + + D+K L+ ++D L+ ++ SGIIML ++ Sbjct: 737 KLAAKESASLTS--KVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLGNVA- 793 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A+ V Sbjct: 794 DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAAALPSALESV 852 Query: 893 ASFLKK 898 +++ + Sbjct: 853 DAWIAE 858 >gi|237745661|ref|ZP_04576141.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] gi|229377012|gb|EEO27103.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] Length = 870 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 382/910 (41%), Positives = 536/910 (58%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH ++ SS L+P NDPTLM TN+GMV FK++F G +K Y Sbjct: 1 MKSAEIREKFLSFFKAKGHTVVRSSPLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AWDLLT + L Sbjct: 61 TSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWDLLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY ED+EA+ +W GL ++I+RI N DNFW MA+TGPCGPCSE Sbjct: 121 PEKLWATVYQEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG P E+G+RYIEIWNLVFMQF + + LP +DTGMGLER+ Sbjct: 181 IFYDHGPEIAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ + TG NN + +VI DH+R+S+F+I DG++P Sbjct: 241 AAVLQHVHSNYEIDLFQNLIRAAARETGTADLTNN--SLKVIADHIRASTFMIVDGLIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 ++G GYVLRRI+RRA+ + LG T P L+ L EMG+AYPEL ++ ++ LR Sbjct: 299 SDGHGYVLRRIIRRALRHGYKLGQTRPFFYKLVEDLVKEMGAAYPELAESAGYVQRILRH 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TLD G+ +L+ L+ ++LNG+ AF LYDT+G PLD+ DI RG+ + Sbjct: 359 EEERFGETLDNGMKILESALAD--GTKVLNGETAFTLYDTYGFPLDLTADICRERGIT-V 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F+ A+E+Q++ ARA + L+ T+F+GY+ L Sbjct: 416 DEQGFDVAMEKQKATARASGKFKMAAM-------LEYNGEKTRFVGYERLE--------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V A+ Q G VE+ V GQ VV D TPFYAE+GGQ+GD G Sbjct: 460 --------------ETGTVVALYQDGAPVEKIVEGQSGVVVLDVTPFYAESGGQVGDVGA 505 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G +R + D QK + HH V G + + ++ + R Q NHS THL+ Sbjct: 506 LLGQHMRFDVEDTQKIQADVAGHHGKVVAGTIAVGDKVDARVNMELRAQTMRNHSVTHLM 565 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + PD RFD +H+ P+T E++ +E+ VN I N P + Sbjct: 566 HKALRQVLGQHVAQRGSLVDPDKTRFDFSHNAPVTDDEIRQVEEIVNREIVANNPTQAQQ 625 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ +DAIA GA AL G KY D VRV+ + S LCGGTHVS TG+I IVSE Sbjct: 626 MSFDDAIAHGATALFGEKYGDVVRVLDIG------FSCELCGGTHVSRTGDIGFFKIVSE 679 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AGIRRIEA+TG A + K+ A LK +V R+ ++ ++ + L Sbjct: 680 GGVAAGIRRIEAVTGLAAMYWVQEMARKVGEAAVALKTQPDELVNRIVQLQDQMKGLDRE 739 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K + + V ++ +I D L++ MD L+ ++++ I+L Sbjct: 740 LSTLKARFASSQGNDLAAKAVDVKGVKVLASLIEGADVPGLRNAMDKLKDRLKTAAIVLA 799 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K+ K S++ +T D+ + A +L A+ + GG GGGRP MAQ+GG + + +A Sbjct: 800 SV-KDGKVSLIAGITSDMTAKIRAGELVNHVARQV-GGKGGGRPDMAQAGGSDPSALPEA 857 Query: 889 IAGVASFLKK 898 + V +++++ Sbjct: 858 LKSVKNWVEE 867 >gi|224584605|ref|YP_002638403.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469132|gb|ACN46962.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 876 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 392/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D +K H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAV-DATQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|226945497|ref|YP_002800570.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ] gi|226720424|gb|ACO79595.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ] Length = 874 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 390/911 (42%), Positives = 535/911 (58%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWEFLTSPKWLK 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L +L++TVY D+EA+ +W + G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPAEKLWVTVYASDDEAYDIWTRTVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS+ E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPEIWGGPPGSAEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ AS Q G + + +V+ DH+RS SFLIADG+ Sbjct: 241 RISAVLQHVHSNYEIDLFQNLLAASAQAIGCA--NDGAPSLKVVADHIRSCSFLIADGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG AYPEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVGALAAEMGDAYPELRQQRAQIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P D+ DI R L Sbjct: 359 KNEEEQFAKTLEQGLKILEQDLAGLA-AKVIPGDVVFKLYDTYGFPADLTADIARERDLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ + SL + T F GY+ G Sbjct: 418 -IDEEGFEREMQAQRERARSA------SAFGLDYNSLVKVDADTLFTGYEETFG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G VE G++ VV D+TPFYAE+GGQ+GD Sbjct: 465 -----------------QGQVVALFKGGATVERLGEGEEGVVVLDRTPFYAESGGQVGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G K G +HH +V +G L +L +D R ++NHSATH Sbjct: 508 GYLSDASGVRFDVRDTTKVGGAHLHHGVVAKGGLHVGQALEAQVDGSVRGATALNHSATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + +T+ ++K++E VN I +N V T Sbjct: 568 LLHAALRRVLGEHVQQKGSLVNSQRLRFDFSHFEALTTEQIKALEALVNTEIRKNTAVET 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +++ + A GA AL G KY D VRV+S+ G S LCGG H TG+I L IV Sbjct: 628 EVIDIDSAKKKGAMALFGEKYGDNVRVLSM-----GDFSIELCGGIHARRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E + AG+RRIEA+TG A +L +E+LK +A LK S+ N++ ++ + E R+L+ Sbjct: 683 GEGGVAAGVRRIEAVTGAGALDYLNAAEEQLKEVAGLLKGSRDNLLDKLAGLLERNRQLE 742 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + S ++A V +S + +D K L +++D L+ K+ S +I+ Sbjct: 743 KELEQLKAKAASAAGDDLAGSAIEVAGVKVLSARLDGLDGKALLALVDQLKNKLGSAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + K ++ VT+D++ + A DL + +A V+GG G GGRP MAQ GG K D Sbjct: 803 LGG-EFDGKVVLVAGVTQDMIGKLKAGDLMKQAAAVVGGKG-GGRPDMAQGGGSEAGKLD 860 Query: 887 QAIAGVASFLK 897 +A+A V F++ Sbjct: 861 EALALVRPFVE 871 >gi|227114946|ref|ZP_03828602.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 875 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 387/910 (42%), Positives = 543/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG P E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLFK LI+A + G + RVI DH+RS +FLIADG++ Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIEAVAKAVGTTD--LTNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD + +L + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 361 KTEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+ QR RAR + SL T F GY+ + Sbjct: 420 -VDEEGFEAAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V AI G V++ +G + V+ ++TPFY E+GGQ+GD Sbjct: 467 -----------------QAKVIAIYHNGTAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H + +G LR S+ +D Q R ++ +NHSATH Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH S TG+I L I+ Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743 Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + ++ V + + VD K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|149378261|ref|ZP_01895973.1| alanyl-tRNA synthetase [Marinobacter algicola DG893] gi|149357458|gb|EDM45968.1| alanyl-tRNA synthetase [Marinobacter algicola DG893] Length = 876 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 385/912 (42%), Positives = 546/912 (59%), Gaps = 54/912 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL++F++ GH ++PSSSL+P +DPTL+FTN+GM FK++F G+EK Y Sbjct: 1 MKTAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDVFLGREKRDYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT Sbjct: 61 TTTQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGDDWLK 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EAF +W + G+ AD+I+RI N DNFW M +TGPCGPC Sbjct: 121 LPKEKLWVTVYASDDEAFDIWNQEVGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G + GG PGS E+G+RYIEIWN+VFMQ+ +Q E LPK S+DTGMGLE Sbjct: 181 TEIFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRQADGEMLPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDL + L+ A+ + G + RV+ DH+RS +FLI+DG++ Sbjct: 241 RITAVLQGVHSNYEIDLMQDLLNAASDILGG--VETTEASLRVVADHIRSCAFLISDGVM 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRG+VLRRI+RRA + LG T+P L AL MG A+P+L+ ++ IE+ L Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATQPFFHKLTGALVELMGDAFPQLVSSRKQIEKVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTLD+GL LL+ ++ L EI GD F LYDT+G P+D+ DI RGL Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAALESSEI-PGDTIFTLYDTYGFPVDLTNDIARERGLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + +A+E QR RARA S + G+T+F GY+ + G + Sbjct: 418 -LDYDGYEKAMERQRERARAASKFGMDYNAAGLNIE-----GSTEFTGYEHIDGHE---- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ ++ GE + A +G + +V ++TPFYAE+GGQ+GDT Sbjct: 468 -------------------TIRTVIVGGEE-KAAQAGDEAILVLERTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G R ++TD QK+ +H V G L + + ID+ R + NHSATH Sbjct: 508 GLLTWSGGRFKVTDTQKEGSN-HLHIGTVIEGELFPGLEVDARIDHARRERTKKNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV+Q GS + PD LRFD +H + +T +L+ IE VN+ I N PV T Sbjct: 567 LMHAALRNVLGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILDNTPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I + E A A GA AL G KY D VRV+S+ +S LCGGTHV+ TG+I L I Sbjct: 627 EITDMEQAQAKGAMALFGEKYGDTVRVLSMGS---DAYSVELCGGTHVARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEA+TG A + ++ L+ A +K S+ ++V +V++ + R+L+ Sbjct: 684 SESGISSGVRRIEAVTGFGALEWVEETEQTLREAAKLVKGSRESLVEKVQQALDRNRQLE 743 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L S +A + ++ + D K L D L+ K+ G+++ Sbjct: 744 KDINALQAKLASSAGTDLASSAVDVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + ++ K +++ VT+ R A DL + A + G GGGRP MAQ GG + +K Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRVKAGDLMKHLAAQV-DGKGGGRPDMAQGGGNDPSKLA 861 Query: 887 QAIAGVASFLKK 898 A+AGV ++++K Sbjct: 862 DALAGVPAWVEK 873 >gi|91792571|ref|YP_562222.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217] gi|122968878|sp|Q12PX7|SYA_SHEDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91714573|gb|ABE54499.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217] Length = 874 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 380/909 (41%), Positives = 545/909 (59%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FL +F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 4 TTAKLRSAFLAYFETQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRSYSRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFAWTFLTETLKLPT 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF+LW K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAFELWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWN+VFMQ+ +Q LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGAMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+FK LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFKQLIAKTAEIIGVSD--LENKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L + MG A L++ ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLISVMGDAAKGLVETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL LLD L+ L ++L+GD AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGLLDNALNELS-GKVLDGDTAFKLYDTYGFPVDLTADVCRERDIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + TQF GY L G Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNKQLIIDEETQFCGYKGLSG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V A+ G+ V E GQ VV + TPFYAE+GGQ+GD G Sbjct: 465 --------------EANVVALYLDGQAVNEVTQGQDAVVVLNNTPFYAESGGQVGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GI +TD QK + V G ++ L ++ R++ +NHS THLLH Sbjct: 511 SAQGINFSVTDTQKFGQATGHQ-GKVLEGSIKVGTKLAAEVNKDLRQRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G+HV+Q GS + P+ LRFD H + + +AELK +E+ VN I N + T M Sbjct: 570 AALRQVIGTHVTQKGSLVNPERLRFDFAHFEGVKAAELKQVEELVNAQIRCNHELNTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+++VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 AIDEAKEKGAMALFGEKYDEKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q L A LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAEQQAMLDEAAGLLKSDSASVVAKLKAQLDKTKQLEKEL 744 Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K +L I V + + VD L+ + D L++K++S II+L G Sbjct: 745 SQLKDKLAAAASADMAGDAQDINGVKVLVKKLEGVDPGSLRGLQDELKQKLKSAIILL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +K+ K +++ V+ DL + A +L + A+ + GG GGGRP MAQ+GG D A+ Sbjct: 804 TAKDGKVNLIAGVSNDLTAKVKAGELVAMVAQQV-GGKGGGRPDMAQAGGTQVENLDAAL 862 Query: 890 AGVASFLKK 898 A ++++ + Sbjct: 863 ASASTWIAE 871 >gi|51595175|ref|YP_069366.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|170025588|ref|YP_001722093.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] gi|186894190|ref|YP_001871302.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] gi|59798514|sp|Q66E68|SYA_YERPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830293|sp|B2K5X9|SYA_YERPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830296|sp|B1JJA0|SYA_YERPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51588457|emb|CAH20065.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|169752122|gb|ACA69640.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] gi|186697216|gb|ACC87845.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] Length = 875 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 392/910 (43%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + SL A+QF GYD ++ Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +TD QK H I+ G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q S I V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 AALASVEAWV 871 >gi|153950576|ref|YP_001402195.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] gi|205830292|sp|A7FLR7|SYA_YERP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152962071|gb|ABS49532.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] Length = 875 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 392/910 (43%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + SL A+QF GYD ++ Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +TD QK H I+ G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q S I V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATTT-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 AALASVEAWV 871 >gi|205830250|sp|Q07R87|SYA_RHOP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 891 Score = 906 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 457/901 (50%), Positives = 609/901 (67%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 1 MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L Sbjct: 61 AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQF+Q R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF+ LI+A +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L + ++ +G+ AF LYDT+G PLD+ QD L ARG +DI SF Sbjct: 361 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARG-ISVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ ARA G G E +WF L+EK GAT+F+GY+ Sbjct: 420 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + V A+V+ G++V++ +G +V +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKKA +FVH VE G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPI++ EL+ +ED N+++ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVV + + S LCGGTHV TG+I L+ + E Sbjct: 637 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG++AR K A+ L+ S ++ R+ + +E +KL+ Sbjct: 697 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 756 Query: 774 HAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 A+ + +L + ++ V M+ + V+ K+LKS++D +K++ SG Sbjct: 757 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I L+ S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|330889188|gb|EGH21849.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020] Length = 874 Score = 906 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 386/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A + G GGGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVS-GKGGGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|299067646|emb|CBJ38855.1| alanyl-tRNA synthetase [Ralstonia solanacearum CMR15] Length = 888 Score = 906 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 381/917 (41%), Positives = 536/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 9 MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRSYTRA 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 69 TSVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 128 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 129 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 188 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G I GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 189 IFYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 248 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 249 GLERLAAILQHVHSNYEIDLFEALIAAASRETNTKDLSNN--SLRVIADHIRACSFLIVD 306 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL A+ + Sbjct: 307 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVVQMGEAYPELRDARDRVV 366 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + LR+E+ RF +T++ G+ +LDG L L +L+G++AFKL+DT+G PLD+ QD+ Sbjct: 367 DVLRTEEARFFETIEHGMSILDGALGELKASGANMLDGELAFKLHDTYGFPLDLTQDVCR 426 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GYD L Sbjct: 427 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMAVGT------LDYTGDKTTFHGYDQLVRE 479 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+ GQ VV D TPFYAE+GG Sbjct: 480 ----------------------TARVTALFVDGASVDAMQPGQTGVVVLDHTPFYAESGG 517 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D QK +F HH + G+L+ ++ +D R + N Sbjct: 518 QVGDQGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAARRARTMRN 577 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 578 HSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 637 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 638 AATNAQVMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 691 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 692 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 751 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K++ Sbjct: 752 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 811 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L +S + K +++ VT D R A +L A+ + GG GGGRP MAQ+GG Sbjct: 812 TAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 869 Query: 882 GNKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 870 PDKLPQALAGVTAWVQQ 886 >gi|153829905|ref|ZP_01982572.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39] gi|148874593|gb|EDL72728.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39] Length = 860 Score = 906 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|262164028|ref|ZP_06031767.1| alanyl-tRNA synthetase [Vibrio mimicus VM223] gi|262027556|gb|EEY46222.1| alanyl-tRNA synthetase [Vibrio mimicus VM223] Length = 860 Score = 906 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 388/911 (42%), Positives = 541/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K HH ++ +G+L + +D Q R +S+NHSATHL Sbjct: 510 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+ E+K +E VN I +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A ++ Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|74316571|ref|YP_314311.1| alanyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259] gi|74056066|gb|AAZ96506.1| alanyl-tRNA synthetase, class IIc [Thiobacillus denitrificans ATCC 25259] Length = 886 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 366/910 (40%), Positives = 526/910 (57%), Gaps = 55/910 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+ Y Sbjct: 15 MKSSA-IRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSR 73 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Sbjct: 74 AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKL 133 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 +L++TVY ED+EA+ +W G+ +I+RI N DNFW+M +TGPCGPC+ Sbjct: 134 PSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCT 193 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G + GG P E+G+RYIEIWN VFMQF + LPK S+DTGMGLER Sbjct: 194 EIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLER 253 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ V+Q +NY+IDLF+ LI A+ + T GNN + +VI DH+R+ SFLI DG++P Sbjct: 254 ISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNN--SLKVIADHIRACSFLIVDGVIP 311 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRRI+RRA+ + LG ++P L MG AYPEL++A+ + + LR Sbjct: 312 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILR 371 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +T++ G+ +L+ L L + +G++AFKL+DT+G PLD+ DI G Sbjct: 372 QEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAG-VA 430 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ Q+++AR + AT F GYD L Sbjct: 431 VDTAAFDAAMARQKAQARGAGKFKLGAGLD-------YAGEATTFHGYDTL--------- 474 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 475 --------------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRG 520 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K +F HH +V+ G L S++ +D R + NHS THL Sbjct: 521 TLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHL 580 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG HV Q GS + + RFD P+T+A+++ +E VN I N P R Sbjct: 581 MHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQAR 640 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M EDA +GA L G KY D VRV+ + S LCGGTHV+ TG+I L IVS Sbjct: 641 VMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVARTGDIGLFKIVS 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RR+EAITG A ++L ++++++ A+ LK + ++ + + R L+ Sbjct: 695 ESGVAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEK 754 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L I V ++ + +D+K L+ D L+ K++S ++L Sbjct: 755 DLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL 814 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + K S++ VT D+ + A +L + A + GG GGG+P +A +GG + Sbjct: 815 -GTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPA 872 Query: 888 AIAGVASFLK 897 A+A V ++++ Sbjct: 873 ALASVEAWVQ 882 >gi|2500957|sp|P70865|SYA_BARBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1568622|gb|AAB09037.1| AlaS [Bartonella bacilliformis] Length = 886 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 471/909 (51%), Positives = 631/909 (69%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVDFKNVFTGLEKHSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY +D+ A LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ+EQ +K++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS+++ G+K G+ +HRVI DHLRSS+FLIADGI+P+NEGRGY Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG + LM L+P L +EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ +HL + + NG+VAFKLYDT+G PLD+ QD L RG +D+ +F+ Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ Q++ ARA+ G G TE +WFS++++ GAT+F+GY+ Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+++ GE+V+ GQK +V +QTPFY E+GGQ+GD+G G Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKK + +F+H ++ G + + L +D RR++ NHSATHLLH +L Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV Q GS ++PD LRFD +H K I+S ELK IED NDI+ QN V TR+M +DA Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRV+S+ S LCGGTHV TG+I L++I+SE+ Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+T AR +L GQD ++ +A LK S +V RV+ + +E RKL+ Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756 Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +++K+ LN ++ I ++FM ++S + K+LK+++D+ +KKI SG++ + Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S++ K S ++ VT+DL D NAVDL R+ + LGG GGGGR MAQ+GG G KAD+A Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876 Query: 889 IAGVASFLK 897 + + LK Sbjct: 877 LVALKDSLK 885 >gi|329849339|ref|ZP_08264185.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19] gi|328841250|gb|EGF90820.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19] Length = 878 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 438/903 (48%), Positives = 580/903 (64%), Gaps = 32/903 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR TFL++F +N HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MPSLNQIRQTFLDYFARNDHEVVASSSLVPQNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW LLTK++ L Sbjct: 61 ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEHAWTLLTKDYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + R+ TVY +D+EAF+LWKKI+GL +I RI +DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 NPDRMMATVYIDDDEAFELWKKIAGLPESRIARIAGSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+R++EIWNLVFMQF+QQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQFDQQPDGTRVNLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLFK+LI AS + TG+ EG+++ +HRVI DHLRSSSFLIADG+ P+NEGRGY Sbjct: 241 VHNNYDIDLFKNLISASVEATGVAAEGDSLPSHRVIADHLRSSSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPL+ L P L EMG Y EL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGSQEPLLHRLAPTLVAEMGGHYGELKRAEAAIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RG+ LLD + L ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++ F Sbjct: 361 RTLGRGMTLLDEAVRDLKSGDMLEGEVAFKLYDTYGFPLDLTQDAVRAKGLS-VNVAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++E Q+ R R G G T WF++KE GA++F GYD L Sbjct: 420 ASMEAQKQRGRDAWTGSGEKATAAEWFAIKEAIGASEFTGYDHL---------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V+AIV GE +EEA++G V +VF+++PFY E GGQ GD G Sbjct: 464 -------SAQGHVQAIVLDGETIEEALTGDTVSMVFEKSPFYPEGGGQAGDVGTVDFLHG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D Q++A + VH + G ++ L +D R+ NHSA HL+H AL Sbjct: 517 KGNVLDTQRQAGDLIVHRIEITEGRVKVGDKAELHVDAGKRKTTRSNHSAAHLVHAALRH 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P+T EL IE VN ++ QN T++M E A Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGGPLTVDELARIEAEVNAVVLQNAAAATKLMTPEAA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 I +GA AL G KY D VRV+++ G +S LCGGTHV+ TG+I L IVSES I Sbjct: 637 IEAGAIALFGEKYGDEVRVLALGQALDGQGDYSVELCGGTHVARTGDIALFKIVSESGIA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG+ AR L+ Q +SLA KV V RVE + E ++L+ A+ Sbjct: 697 AGVRRIEAVTGEAARQFLLEQAGVARSLADQFKVPVSQVEARVEALVAERKRLEKELAEA 756 Query: 778 KLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K L V +I ++ ++ V K+L+ + + +K++ SGI+ LVG + Sbjct: 757 KRALAVGGGGAASGPEEINGTKLIARVLEGVGGKDLRPLAEDFRKQVGSGIVALVG-KLD 815 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 KA+V + VT DL R+NA +LA+ + +GG G GG+P AQ G P+ +KAD + V Sbjct: 816 GKAAVTVTVTADLTGRYNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDDSKADAGLEAVK 875 Query: 894 SFL 896 + + Sbjct: 876 ALI 878 >gi|327483364|gb|AEA77771.1| Alanyl-tRNA synthetase [Vibrio cholerae LMA3894-4] Length = 860 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 544/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ +L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGSLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|291614561|ref|YP_003524718.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] gi|291584673|gb|ADE12331.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] Length = 873 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 377/911 (41%), Positives = 534/911 (58%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL++F GH ++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSSEIRQKFLDYFASKGHTVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+ F L Sbjct: 61 ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +LY+TVY ED+EA+ +W K GL+AD++IRI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLYVTVYAEDDEAYDIWTKKVGLAADRVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G IPGGLP E+G+RYIEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGAHIPGGLPGTPEEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + VLQ NY+IDLF+ LI+A+ + T + + RV+ DH+R+ SFLIADG++P Sbjct: 241 SAVLQHVHANYEIDLFQALIKAAARETNQT--NLDQPSLRVLADHIRACSFLIADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG E ++P L +MGSAYPEL+ ++ ++ L+ Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGAREAFFYKMVPDLVEQMGSAYPELVAEQVRVKGILKL 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF T++ G+ +L+ L+ + K ++ NG+ AFKL+DT+G PLD+ DI RG+ Sbjct: 359 EEERFFATIEHGMAILEADLAEMEKAGGKVFNGETAFKLHDTYGFPLDLTADICRERGVK 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D +FN A+ Q+ +ARA + +L+ AT F GY+ L Sbjct: 419 VDD-AAFNAAMARQKEQARAAGKFKMAA-------NLEYSGPATTFHGYESLEH------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G V E G VV D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------KGNILALYKDGVEVNELNEGDLGVVVLDDTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK +F HH +V+ G L + +D R + NHSATH Sbjct: 508 GELRSVHGIFAVEDTQKIQASVFGHHGVVKTGKLSVGNGVTARVDVAARSRTMRNHSATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD H++P++ AE++ +E VN I N + Sbjct: 568 LMHKALREVLGTHVQQKGSQVDADKTRFDFVHTQPMSDAEIRKVEAIVNAEILSNAECQS 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M E+A +GA L G KY D VRV+++ S LCGGTHV TG+I L IV Sbjct: 628 RVMPIEEAQKTGAMMLFGEKYGDVVRVLNIGS------SIELCGGTHVKRTGDIGLFKIV 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES + AG+RR+EA+TG+ A + + Q+ +L+ +A +K R+ +I + + L+ Sbjct: 682 AESGVAAGVRRVEAVTGEGALALVQQQEVQLQQVADAVKAQPQEAAARITQILDNVKSLE 741 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L ++ V ++ + D+ L+ +D L+ K++S ++ Sbjct: 742 KELAALKSKLASAQGDELLAQAQDVSGVKVLAAKLDGADAAVLRETLDKLKDKLKSAAVV 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 802 LASVA-EGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPEHLA 859 Query: 887 QAIAGVASFLK 897 +A+A V ++K Sbjct: 860 KALASVPDWVK 870 >gi|325983477|ref|YP_004295879.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212] gi|325532996|gb|ADZ27717.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212] Length = 865 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 381/902 (42%), Positives = 536/902 (59%), Gaps = 48/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FLEFF+ GH ++ SS L+P NDPTL+FTN+GMV FK+IF GQ+K Y Sbjct: 1 MKSSEIRQKFLEFFESQGHTVVSSSPLVPGNDPTLLFTNAGMVQFKDIFLGQDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AWD LT ++ Sbjct: 61 VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILFAWDFLTHTLNIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L++TVY ED+EA +W G+ +I+RI T DNFW M +TGPCGPCSEIF+D G Sbjct: 121 HEKLWVTVYAEDDEAAGIWLNEVGVEPSRIVRIATMDNFWQMGDTGPCGPCSEIFYDHGA 180 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS +G+RYIEIWNLVFMQ+ + + LPK S+DTGMGLER++ V+Q Sbjct: 181 DVQGGPPGSADADGDRYIEIWNLVFMQYNRDSAGVLHPLPKPSVDTGMGLERISAVMQHV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLF+ LI+A+ +VT N + +VI DH+R+ SFLIADG++P +EGRGYV Sbjct: 241 HSNYDIDLFQSLIKAAARVTNTS--NLNDNSLKVIADHIRACSFLIADGVIPGSEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG +P L+ L MG AYPEL AK + L E+ERF + Sbjct: 299 LRRIIRRAIRHGYKLGQKQPFFHQLVEDLDQVMGQAYPELTAAKARVAAVLLQEEERFAE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ +L+ LS +IL+G+ AF+LYDT G P+D+ DI RG+ +D F Q Sbjct: 359 TLENGMQILETALSQ--NIQILDGETAFRLYDTFGFPIDLTADIARERGIT-VDYAGFEQ 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ QR +ARA S ++ T F GY+ L+ Sbjct: 416 AMARQREQARAASKFTLQEG-------IEYSGSQTTFYGYETLQH--------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + A+ +QG V+ +G + VV DQTPFYAE+GGQ+GD G + Sbjct: 454 --------EGQILALYKQGSAVDSIEAGDEAVVVLDQTPFYAESGGQVGDCGELLAANGI 505 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++TD QK G+F H + G L + ++ ++ QNR ++ NHSATHLLH AL + Sbjct: 506 FEVTDTQKIQAGVFGHKGKLHSGRLMIKDTVHAQVNAQNRISIANNHSATHLLHAALREV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+HV+Q GS + + RFD +H+ P+T+ ++++IE VND I N V M +DAI Sbjct: 566 LGTHVTQKGSLVDANRTRFDFSHNVPLTADDIRAIERLVNDQIRNNCIVEAATMKYDDAI 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+D VRV+ + G S+ LCGGTHV G+I L IV+ES + AGI Sbjct: 626 KRGAMALFGEKYSDVVRVIGM-----GEFSTELCGGTHVPQVGQIGLFKIVAESGVAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RR+EA+TG+ A ++ ++ +L +A LK + V ++ +I + R + A+ K + Sbjct: 681 RRVEAVTGKAAIDYVQQREAQLLEIAQTLKANPQEVTQKIAQIIDNVRHTERELARLKTK 740 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + V ++ + D+K L+ +D L+ K+++ I+L + K Sbjct: 741 LASSQGADLASQAQDVNGVKVLAVNLENADAKTLRETLDQLKDKLKTCTIVL-STVADGK 799 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ V+ DL DR A +L A+ + GG GGGR MAQ+GG + A+ GV + Sbjct: 800 VTLIAGVSADLTDRIKAGELVNFVAQQV-GGKGGGRADMAQAGGTQPEQLPGALGGVKDW 858 Query: 896 LK 897 ++ Sbjct: 859 VE 860 >gi|149927912|ref|ZP_01916162.1| alanyl-tRNA synthetase [Limnobacter sp. MED105] gi|149823351|gb|EDM82584.1| alanyl-tRNA synthetase [Limnobacter sp. MED105] Length = 878 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 56/914 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 V+ IR FL+FF GH + SSSL+P NDPTL+FTNSGMV FK++FTG++K Y Sbjct: 1 MKVADIREKFLDFFASKGHTKVASSSLVPGNDPTLLFTNSGMVQFKDVFTGKDKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+LLT + L Sbjct: 61 TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIQYAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 RLY+TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPC+E Sbjct: 121 PERLYVTVYQEDDEAYNIWNKQVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIE+WNLVFMQF++ LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEVWGGPPGSEQEDGDRYIEVWNLVFMQFDRTADGVLHPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGIL 291 A VLQ +NY+IDLF+ LI+A+ + + + RVI DH+R+ SFL+ DG++ Sbjct: 241 AAVLQHVHSNYEIDLFQTLIKAAAREVTAQGNAVELTNNSLRVIADHIRACSFLVVDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRI+RRA+ + LG +P L+ L +EMG AYPEL +A ++ L Sbjct: 301 PGNEGRGYVLRRIIRRAIRHGYKLGCRKPFFNALVGDLVSEMGEAYPELAKAAAQVQSIL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ERF +T++ G+ +LD L L K +L+G+ AFKL+DT+G PLD+ D+ R ++ Sbjct: 361 KAEEERFFETIENGMAILDSALGALPKGGMLDGETAFKLHDTYGFPLDLTADVCREREMS 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++A+ +Q+ +ARA K+ L T+F GYD L Sbjct: 421 -VDEAAFDEAMNKQKQQARAAGKF-------KMDADLAYSGVVTEFKGYDALE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ + AI G V +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ---------------VANATITAIYVNGTSVNSIAAGQQGVVVLDQTPFYAESGGQVGDQ 510 Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G ++ D QK +F HH + G L+ ++ +D R + NHS Sbjct: 511 GEISNGSACLNLFRVLDTQKIQANVFGHHGELVTGELKVGDAVGAQVDQYQRNRTIRNHS 570 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG HVSQ GS + + RFD H +T ++ +E VN+ I N Sbjct: 571 ATHLMHKALREVLGDHVSQKGSLVDAEKTRFDFAHHSAMTPEQIAQVERIVNEEILANAE 630 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 RIM+ E A ++GA L G KY D VRV+ + S LCGGTHV TG+I L Sbjct: 631 TQARIMDIESAKSAGAMMLFGEKYGDTVRVLDIGS------SRELCGGTHVQRTGDIGLF 684 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES + AGIRR+EA TG A +++++A L+V ++ +I ++ + Sbjct: 685 KITSESGVAAGIRRVEATTGLGAMEFAQKAQAQVEAIAQSLRVPATEATAKIGQIMDQVK 744 Query: 769 KLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ + K +L I V ++ + D K+L+ D L+ K+ + Sbjct: 745 NLEKELDRLKSKLAASQGDDLAGQAVDIDGVKVLAAKLEGADVKQLREAADKLRDKLGNA 804 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++L + E K S++ V++D + A DL A+ + GG GGGRP MAQ+GG Sbjct: 805 ALVLATVL-EGKVSLIASVSKDATAKVKAGDLVNFVAQQV-GGKGGGRPDMAQAGGTQPE 862 Query: 884 KADQAIAGVASFLK 897 D A+A V ++K Sbjct: 863 NLDAALASVVDWVK 876 >gi|15640567|ref|NP_230196.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590679|ref|ZP_01678012.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121728567|ref|ZP_01681589.1| alanyl-tRNA synthetase [Vibrio cholerae V52] gi|153819108|ref|ZP_01971775.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457] gi|153823946|ref|ZP_01976613.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|227080728|ref|YP_002809279.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2] gi|229507157|ref|ZP_04396663.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229508981|ref|ZP_04398469.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|229519648|ref|ZP_04409091.1| alanyl-tRNA synthetase [Vibrio cholerae RC9] gi|229606165|ref|YP_002876813.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254850784|ref|ZP_05240134.1| alanyl-tRNA synthetase [Vibrio cholerae MO10] gi|255744228|ref|ZP_05418181.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101] gi|12644031|sp|Q56648|SYA_VIBCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|9654973|gb|AAF93713.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547465|gb|EAX57573.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121629179|gb|EAX61620.1| alanyl-tRNA synthetase [Vibrio cholerae V52] gi|126510340|gb|EAZ72934.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457] gi|126518530|gb|EAZ75753.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|227008616|gb|ACP04828.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2] gi|229344337|gb|EEO09312.1| alanyl-tRNA synthetase [Vibrio cholerae RC9] gi|229353906|gb|EEO18840.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|229355902|gb|EEO20822.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229368820|gb|ACQ59243.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254846489|gb|EET24903.1| alanyl-tRNA synthetase [Vibrio cholerae MO10] gi|255738168|gb|EET93560.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101] Length = 860 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 390/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|153826924|ref|ZP_01979591.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2] gi|254291229|ref|ZP_04962025.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226] gi|149739227|gb|EDM53495.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2] gi|150422923|gb|EDN14874.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226] Length = 860 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|147675089|ref|YP_001216045.1| alanyl-tRNA synthetase [Vibrio cholerae O395] gi|229520840|ref|ZP_04410262.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80] gi|262169855|ref|ZP_06037545.1| alanyl-tRNA synthetase [Vibrio cholerae RC27] gi|205830284|sp|A5F9B7|SYA_VIBC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146316972|gb|ABQ21511.1| alanyl-tRNA synthetase [Vibrio cholerae O395] gi|227012371|gb|ACP08581.1| alanyl-tRNA synthetase [Vibrio cholerae O395] gi|229342073|gb|EEO07069.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80] gi|262021589|gb|EEY40300.1| alanyl-tRNA synthetase [Vibrio cholerae RC27] Length = 860 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 390/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|197249925|ref|YP_002147723.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213628|gb|ACH51025.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 876 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 392/895 (43%), Positives = 555/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERKIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE + Q+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAEQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|115523616|ref|YP_780527.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] gi|115517563|gb|ABJ05547.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] Length = 893 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 457/901 (50%), Positives = 609/901 (67%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 3 MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L Sbjct: 63 AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 123 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 182 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQF+Q R LPK SIDTGMGLER+A VLQ Sbjct: 183 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF+ LI+A +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 243 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 303 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L + ++ +G+ AF LYDT+G PLD+ QD L ARG +DI SF Sbjct: 363 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARG-ISVDIASFT 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ ARA G G E +WF L+EK GAT+F+GY+ Sbjct: 422 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + V A+V+ G++V++ +G +V +QTPFYAE+GGQ+GDTG DG+ Sbjct: 464 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 518 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKKA +FVH VE G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 519 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 578 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPI++ EL+ +ED N+++ +N V TR+M +DA Sbjct: 579 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 638 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVV + + S LCGGTHV TG+I L+ + E Sbjct: 639 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 698 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG++AR K A+ L+ S ++ R+ + +E +KL+ Sbjct: 699 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 758 Query: 774 HAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 A+ + +L + ++ V M+ + V+ K+LKS++D +K++ SG Sbjct: 759 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 818 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I L+ S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 819 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 878 Query: 884 K 884 K Sbjct: 879 K 879 >gi|317484483|ref|ZP_07943393.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6] gi|316924259|gb|EFV45435.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6] Length = 884 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 392/909 (43%), Positives = 530/909 (58%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+F+K+GH + SSSLIP +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MLTANEIRHRFLEYFKKHGHTEVASSSLIPRDDPSLLFTNAGMVQFKKIFCGQEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKE AI+ AW +T++ L Sbjct: 61 ATTSQKCLRVGGKHNDLDNVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFITEDLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLYITVY +D+EAF+LW+K++G++ ++I R+ DNFWSM +TGPCGPCSEI FDQG Sbjct: 121 PKDRLYITVYKDDDEAFELWQKVAGVAPERIFRLGEKDNFWSMGDTGPCGPCSEIHFDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + G + +R++EIWNLVFMQFEQ R LP+ SIDTGMGLER+A V Q Sbjct: 181 ADMACGPDCGIGKCDCDRFLEIWNLVFMQFEQLADGSRVPLPRPSIDTGMGLERIAGVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 +NYD DLF+ I ++ G++Y N N RVI DH R+ +F+IADGILP+NEG Sbjct: 241 GVRSNYDTDLFQVFINYMAELAGVRYRDNADNDTALRVIADHSRAIAFMIADGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RL+G EP + + MG YPEL + R E+E Sbjct: 301 RGYVLRRLIRRAFRFGRLMGMQEPFLYKTALKVVEVMGEDYPELRARADFMARVTREEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TLD+GL +L+ + L ++I+ G+ AFKLYDT+G PLDI+ D+ RG D Sbjct: 361 RFSSTLDKGLSMLEEEMDALADKGEKIIPGETAFKLYDTYGFPLDIVNDVAEKRGFKA-D 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN+ + +Q+ RARA G G + L E ++F GY L G Sbjct: 420 EAGFNEYMHQQKQRARAAWKGSGEKDIASRFQGLLEDGLKSEFFGYTALTGVGR------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +V + G VE SG VV DQTPFY +GGQ GDTG Sbjct: 474 ----------------VVALLDGDGLPVEALPSGSLGYVVTDQTPFYGASGGQCGDTGLL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ D K + + VHH V+ G L ++ +VLT+ R + NH+ THLLH Sbjct: 518 TAPAGSAKVLDTLKPSADLTVHHIEVDGGTLLSDQEVVLTVTESIRLDAARNHTCTHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS +TPD LRFD +H P+T EL ++E +VN I + P+ ++M Sbjct: 578 AALRRVLGDHVRQAGSLVTPDRLRFDFSHIAPMTPEELAAVERDVNAAIMADYPLTAKLM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++ AI GA AL G KY D VRVV++ D S LCGGTH+ STG+ I+SES Sbjct: 638 GQQAAIDMGAMALFGEKYGDTVRVVTIGNPD-HTESVELCGGTHLHSTGQAGSFVILSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG RRIEA TG A H E+L LA+ LK G + +++ + +E R L+ Sbjct: 697 GIAAGTRRIEAATGWNALKHARAMSEELHQLAAMLKTQPGGLAAKLDGLQKENRGLRKDL 756 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K Q +I V ++ + + K ++ +MD ++ K+ SG+ + Sbjct: 757 EKAAAQAASGQGGDLMSKVVEINGVKVLAAKLDASNIKAMRELMDDIRSKMPSGVACIAA 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K S+++ V++DL RF A L + A + G GGGRP AQ+GG N D+A+ Sbjct: 817 PVDEGKVSMILYVSKDLHGRFTAPALIKEVAAPIA-GSGGGRPDQAQAGGTNPAGIDEAM 875 Query: 890 AGVASFLKK 898 + + + + Sbjct: 876 DVLKAKIGE 884 >gi|153802555|ref|ZP_01957141.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3] gi|124121918|gb|EAY40661.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3] Length = 860 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRTYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L +L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GLVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|229525206|ref|ZP_04414611.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] gi|229338787|gb|EEO03804.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] Length = 860 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 VSAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|262172368|ref|ZP_06040046.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451] gi|261893444|gb|EEY39430.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451] Length = 860 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 389/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K HH ++ +G+L + +D Q R +S+NHSATHL Sbjct: 510 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A ++ Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ S +IA VN + ++ D+K L+ ++D ++ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESSGLINQVKQIAGVNVLVAELNGADNKALRGMVDDIKNQLGSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|50122289|ref|YP_051456.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043] gi|59798525|sp|Q6D1T0|SYA_ERWCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49612815|emb|CAG76265.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043] Length = 875 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 388/910 (42%), Positives = 543/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYGIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG P E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLFK LI A + G + RVI DH+RS +FLI+DG++ Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTD--LTNKSLRVIADHIRSCAFLISDGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAEELKKQQSVVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F +TL+RGL LLD + +L + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+ QR RAR + + SL T F GY+ + Sbjct: 420 -VDEEGFEAAMTAQRQRAR------DASGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V++ +G + V+ ++TPFY E+GGQ+GD Sbjct: 467 -----------------QAKVIALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H + +G+LR S+ +D Q R ++ +NHSATH Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGMLRVNDSVDANVDSQRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 569 LLHAALRQVLGVHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA A GA AL G KY+D VRV+S+ G S LCGGTH S TG+I L I+ Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLSM-----GDFSIELCGGTHASRTGDIGLFQII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRSRALE 743 Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + +I V + + VD K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKAQQAAQESSSLSGKATEINGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELVGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|110633619|ref|YP_673827.1| alanyl-tRNA synthetase [Mesorhizobium sp. BNC1] gi|110284603|gb|ABG62662.1| alanyl-tRNA synthetase [Chelativorans sp. BNC1] Length = 909 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 468/894 (52%), Positives = 623/894 (69%), Gaps = 37/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL+FF+KNGHE++ S L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 23 MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 82 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L Sbjct: 83 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 142 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D +RL +TVY D+EA W+KI+GL ++IIRI T+DNFW+M +TGPCGPCSEIFFD Sbjct: 143 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 202 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+EQ + ER LP+ SIDTGMGLER+A VLQ Sbjct: 203 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 262 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLFK LI A+E+ G++ EG +++VI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 263 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 322 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 323 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 382 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL +G+ + L+G+ AFKLYDT+G PLD+ QD L RG+ +D+ FN Sbjct: 383 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 441 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE +WFS+K++ GAT F+GY+ Sbjct: 442 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 483 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V+ G +VE A G++V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 484 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 538 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I + QKK EG+FVH V++G +R + L +D++ R ++ NHSATHLLH AL Sbjct: 539 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 598 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + PD LRFD +H KPI EL+ IED N+++ QN PVVTR+M +DA Sbjct: 599 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 658 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV++TG+I L++I+ E Sbjct: 659 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 718 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG AR +L Q+ +LK+ AS LKVS G+++ R+E + EE RKL+ Sbjct: 719 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 778 Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ + +L + ++ V F+ ++ + K+LK + D +K + SG+++ Sbjct: 779 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 838 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 VG S+E KASV++ VT+DL RF+AVDL R ++ +GG GGGGRP MAQ+GGP+ Sbjct: 839 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 892 >gi|170717275|ref|YP_001784390.1| alanyl-tRNA synthetase [Haemophilus somnus 2336] gi|205830062|sp|B0UTE1|SYA_HAES2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|168825404|gb|ACA30775.1| alanyl-tRNA synthetase [Haemophilus somnus 2336] Length = 874 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 385/913 (42%), Positives = 541/913 (59%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y Sbjct: 1 MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ + IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE + GGLPGS E+G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ V+Q +NYDID+F+ LI ++TG K + RVI DH+RS ++LI DG+ Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKD--LTNKSLRVIADHIRSCAYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG + L+P L M +A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L ++ D +L+G+VAFKLYDT+G PLD+ D+ R Sbjct: 359 LRLEEEQFARTLERGLALLDEALINVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERN- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + +E QR RA+A S + ++ G T F GY Sbjct: 417 IRIDEEGFEREMEVQRLRAQAASRFG------VDYNNVIRVEGTTTFEGYTEAE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ +G+ VE +GQ V+ D TPFYAE+GGQ+GD Sbjct: 465 -----------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 GC I +R + D QK +F H + +G L ++ +D ++R + S+NHSAT Sbjct: 508 RGCLIATNMRFDVKDTQKYG-QVFGHIGTLIQGTLNVGQTINAVVDTEHRIKTSLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LGSHV+Q GS ++ LRFD + I+ +L IE VN I N VV Sbjct: 567 HLLHAALRQVLGSHVAQKGSLVSDTILRFDFAQPEAISQEQLFEIECLVNQHIRANHLVV 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M ++A A GA AL G KY D VRVV + G S LCGG HV TGEI L I Sbjct: 627 TEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VS S+I AG+RR+EA+TG+ A + L Q L A LK ++V +++++ ++ +K Sbjct: 682 VSGSAIAAGVRRVEAVTGEGAINWLQQQQVLLMQSADLLKSDANSLVEKIQQLQDKAKKT 741 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K + ++ S +I V+ + + +D K L+ ++D L+ ++ S +I Sbjct: 742 EKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 802 AFV-TKNEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENI 859 Query: 886 DQAIAGVASFLKK 898 +A+ +L K Sbjct: 860 SKALTVCNEWLHK 872 >gi|30249882|ref|NP_841952.1| alanyl-tRNA synthetase domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|41018196|sp|Q82TF8|SYA_NITEU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|30180919|emb|CAD85841.1| Alanyl-tRNA synthetase:DHHA1 domain [Nitrosomonas europaea ATCC 19718] Length = 863 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 380/903 (42%), Positives = 547/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FLEFF+ GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K Y Sbjct: 1 MKSSEIRQKFLEFFEARGHVIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI AW+ LT + Sbjct: 61 VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRKAILFAWEFLTGSLGIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+ TVY ED+EA +W G+ +++RI T+DNFW M +TGPCGPCSEIF+D G Sbjct: 121 REKLWATVYAEDDEAADIWLNEVGIDPSRLVRIATSDNFWQMGDTGPCGPCSEIFYDHGP 180 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS + EG+RYIEIWNLVFMQ+ + E LPK S+DTGMGLER+A V+Q+ Sbjct: 181 AVAGGPPGSENAEGDRYIEIWNLVFMQYNRDASGELHPLPKPSVDTGMGLERIAAVMQQV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+A+ +VTG K NN + +VI DH+R+ +FLI DG++P NEGRGYV Sbjct: 241 HSNYEIDLFRSLIEAAARVTGSKDLSNN--SLKVIADHIRACAFLITDGVIPGNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG +P L+ L MG AYPEL +A+ + +R E+ERF + Sbjct: 299 LRRILRRAIRHGYRLGQKQPFFYLLVDDLVDVMGPAYPELTRARKHVAGVIRQEEERFAE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ +L+ LSH +E L+G++ F+LYDT G P+D+ DI RG ID+ F Sbjct: 359 TLENGMEVLEAALSH--GNETLSGEIVFRLYDTFGFPVDLTADIARERG-IVIDMAGFET 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + +QR RARA L+ T+F GY L+ Sbjct: 416 CMAQQRDRARASGKFTMQTG-------LEYTGQPTEFHGYATLQH--------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + A+ +QG V+ + + VV DQTPFYAE+GGQ GD+G + Sbjct: 454 --------EAQILALYKQGSRVDFIEADDEAVVVLDQTPFYAESGGQAGDSGELLSGSGT 505 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + D QK G+F H+ ++ G + ++ +D R + NHSATHLLH AL + Sbjct: 506 FTVNDTQKIQAGVFGHNGMLSSGRMAIGDRVIARVDQIARTNTAYNHSATHLLHAALRQV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+HV+Q GS + LRFD +H+ + E++ +E+ VN I +N V T++M +DA+ Sbjct: 566 LGNHVTQKGSLVDASRLRFDFSHNSAMQENEIRQVENLVNAQIRKNHEVATQLMTYDDAV 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRVV++ G S+ LCGGTHVS +G+I IV+ES + AGI Sbjct: 626 KQGAMALFGEKYGDTVRVVAM-----GDFSTELCGGTHVSYSGDIGFFRIVAESGVAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A ++ Q+++L+ +A LK + ++ +I + R+++ A + + Sbjct: 681 RRIEALTGDAALAYTQQQEQQLQQVADALKAAPQEAAQKLSQILDNIRQMEKEIATLRSK 740 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L +I + ++ + V+ K L+ +D + +++S +++L I K+ K Sbjct: 741 LAGVQSTSLIEQAQEIKGIRVLATTLENVNVKTLRETLDNFKNRLKSCVVVLGTIEKD-K 799 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ VT+DL + A DL A+ + GG GGGR MAQ+GG K QA+A V S+ Sbjct: 800 VTLIAGVTDDLTVKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPEKLPQALASVPSW 858 Query: 896 LKK 898 +++ Sbjct: 859 VEQ 861 >gi|86750846|ref|YP_487342.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] gi|123292252|sp|Q2ITM9|SYA_RHOP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86573874|gb|ABD08431.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] Length = 891 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 462/901 (51%), Positives = 606/901 (67%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF DQG Sbjct: 121 KKDKLLVTVYHTDDEAASYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++E WNLVFMQ+EQ K ER LP+ SIDTGMGLERMA +LQ Sbjct: 181 EHIFGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKDERLPLPRPSIDTGMGLERMANILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFETDLFRSLIDATSSALGRGPGEEDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +GD AF LYDT+G PLD+ QD L RG +DI SF Sbjct: 361 KTLDRGLAILDEKSASLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRG-ISVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WF L+EK GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLREKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V G+ V+ +G +V +QTPFYAE+GGQ+GDTG GDG+ Sbjct: 462 -----TETAEGVVTALVADGKEVDALKAGDSGAIVLNQTPFYAESGGQVGDTGVLSGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD KKA +FVH VE G ++ + +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGAIKRDAALQLDVDHARRSSIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITPDELRRVEDIANDIVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKTARDSGSNALGWSVELCGGTHVKRTGDIGLVSITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG+ AR K A+ L+ + ++ R+ + EE +KL+ Sbjct: 697 SAVASGVRRIEALTGRYARQSANAAINTAKQAAAELRTTVDDMPARIAALMEERKKLERE 756 Query: 774 HAKRKLQLNV----------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + + +L + ++ V M+ + ++ K+LKS++D +K++ SG Sbjct: 757 LSDARKKLAMGGGGAAGAADGGADVREVGGVKLMARAVEGIEIKDLKSLVDQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I LV S++ K S+++ VT DL+ RF+AVDL R ++ VLGG GGGG+P MAQ+GGP+G+ Sbjct: 817 VIALVATSEDGKGSIVVGVTPDLVARFSAVDLVRTASVVLGGKGGGGKPDMAQAGGPDGS 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|258623515|ref|ZP_05718516.1| alanyl-tRNA synthetase [Vibrio mimicus VM573] gi|258584177|gb|EEW08925.1| alanyl-tRNA synthetase [Vibrio mimicus VM573] Length = 860 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 390/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K HH ++ +G+L + +D Q R +S+NHSATHL Sbjct: 510 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A ++ Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I+ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNIA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|205830482|sp|Q3SLA9|SYA_THIDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 872 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 366/910 (40%), Positives = 526/910 (57%), Gaps = 55/910 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+ Y Sbjct: 1 MKSSA-IRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Sbjct: 60 AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 +L++TVY ED+EA+ +W G+ +I+RI N DNFW+M +TGPCGPC+ Sbjct: 120 PSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCT 179 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G + GG P E+G+RYIEIWN VFMQF + LPK S+DTGMGLER Sbjct: 180 EIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLER 239 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ V+Q +NY+IDLF+ LI A+ + T GNN + +VI DH+R+ SFLI DG++P Sbjct: 240 ISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNN--SLKVIADHIRACSFLIVDGVIP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRRI+RRA+ + LG ++P L MG AYPEL++A+ + + LR Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +T++ G+ +L+ L L + +G++AFKL+DT+G PLD+ DI G Sbjct: 358 QEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAG-VA 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ Q+++AR + AT F GYD L Sbjct: 417 VDTAAFDAAMARQKAQARGAGKFKLGAGLD-------YAGEATTFHGYDTL--------- 460 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 461 --------------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRG 506 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K +F HH +V+ G L S++ +D R + NHS THL Sbjct: 507 TLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHL 566 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG HV Q GS + + RFD P+T+A+++ +E VN I N P R Sbjct: 567 MHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQAR 626 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M EDA +GA L G KY D VRV+ + S LCGGTHV+ TG+I L IVS Sbjct: 627 VMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVARTGDIGLFKIVS 680 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RR+EAITG A ++L ++++++ A+ LK + ++ + + R L+ Sbjct: 681 ESGVAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEK 740 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L I V ++ + +D+K L+ D L+ K++S ++L Sbjct: 741 DLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL 800 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + K S++ VT D+ + A +L + A + GG GGG+P +A +GG + Sbjct: 801 -GTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPA 858 Query: 888 AIAGVASFLK 897 A+A V ++++ Sbjct: 859 ALASVEAWVQ 868 >gi|187927840|ref|YP_001898327.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J] gi|187724730|gb|ACD25895.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J] Length = 888 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 378/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 9 MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 69 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 128 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 129 AEKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 188 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G + GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 189 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 248 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 249 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 306 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL +A+ + Sbjct: 307 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 366 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E LR+E+ RF +T++ G+ +LD L L ++L+G++AFKL+DT+G PLD+ QD+ Sbjct: 367 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 426 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GY+ L Sbjct: 427 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLVRE 479 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+E GQ VV D TPFYAE+GG Sbjct: 480 ----------------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 517 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 518 QVGDQGTLKAATVWFDVVDTLKVQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 577 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LGSHV Q GS + + RFD +H+ P+T +++ +E VN I N Sbjct: 578 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 637 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 638 AATNAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 691 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IVSES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 692 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTSRIVQVQDQ 751 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K+Q Sbjct: 752 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 811 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L +S + K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 812 TAAIVLGSVS-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 869 Query: 882 GNKADQAIAGVASFLKK 898 + QA+AGVA+++++ Sbjct: 870 PDNLPQALAGVAAWVQQ 886 >gi|87199300|ref|YP_496557.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444] gi|123489936|sp|Q2G8V0|SYA_NOVAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|87134981|gb|ABD25723.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444] Length = 881 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 437/891 (49%), Positives = 587/891 (65%), Gaps = 33/891 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FLE+F NGH+++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E Sbjct: 1 MTSTNEIRRSFLEYFGSNGHDVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAVPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+E+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY D+EAF+LWKKI+GL D+IIRI T DNFW+M + GPCGPCSEIFFD G Sbjct: 121 PKDKLLATVYHTDDEAFELWKKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+R+IEIWNLVFMQFEQ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGEITGSLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYD D FK LI ASE +T ++ EG++ +HRVI DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 EHDNYDTDTFKALIAASESLTSVRAEGDHKASHRVIADHLRSTSFLLADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL EMG+AYPEL +A+ LIEETL E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVAEMGAAYPELGRAQPLIEETLLREEVQFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL G+ LLD + LG+ + L GD AFKLYDT+G P D+ +D L ARG +D F+ Sbjct: 361 RTLSNGIKLLDEATATLGEGDKLPGDTAFKLYDTYGFPYDLTEDALRARG-IAVDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G ++WF + E+ GAT+F GY G Sbjct: 420 AAMAQQKAAARAAWKGSGQAADSEVWFDIAERVGATEFTGYTATTG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A+V+ G+ V+ A++G V V+ +QTPFY E+GGQ GD G G Sbjct: 466 ---------EAQVVALVKDGKEVDSAMAGDDVAVIVNQTPFYGESGGQTGDAGTITGGDG 516 Query: 540 RL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++D K + H+A V+ G ++ + L ID R + NHSATHLLH AL Sbjct: 517 LVLAVSDTAKPLGRLHAHNAKVQSGSVKVGDVVRLDIDVARRDAIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + D LRFD +H +++ ++ +IE VN I N V TR+M+ ED Sbjct: 577 HRLGAHVTQKGSLVAADRLRFDFSHPTALSAEDIAAIEAEVNAEIRANEVVTTRLMSPED 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA AL G KY D VRV+S+ +S LCGGTHV + G+I + IVSES++ + Sbjct: 637 AIEAGAMALFGEKYGDEVRVLSMGRVADKHYSVELCGGTHVRALGDIGVFRIVSESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG+ AR + +++ LK+ AS L+ + +V RV + +E +KL+ A+ K Sbjct: 697 GVRRIEALTGEGARQWFVAREDALKNTASILRTTPEDVEARVTALMDERKKLERELAEAK 756 Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 L + S + V F ++ +D K+L+ ++D ++++ SG+ ++V + Sbjct: 757 KALALGGGSAKAENADEDVNGVKFSGQVLEGLDPKDLRGLLDQAKQRLGSGVAVIVAV-N 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 E KAS+ VT+DL + +AVDL R + LGG GGGGRP MAQ GGP G+ Sbjct: 816 EGKASIAAAVTDDLAGKVSAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGS 866 >gi|152997630|ref|YP_001342465.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1] gi|205830138|sp|A6W1F1|SYA_MARMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150838554|gb|ABR72530.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1] Length = 872 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 384/910 (42%), Positives = 532/910 (58%), Gaps = 53/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R +FL +F+ H+++ SSSL+P NDPTL+FTN+GMV FK++F G++ Y Sbjct: 1 MKSSELRQSFLSYFESKQHQIVESSSLVPGNDPTLLFTNAGMVQFKDVFLGEDIRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT L Sbjct: 61 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYAWEFLTVVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L +TVY +D+EAF +W K GL +KIIRI N DNFW+M +TGPCGPC+E Sbjct: 121 TEKLLVTVYADDDEAFDIWNKDIGLPVEKIIRIGDNKGGRYQSDNFWAMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +F+D GE I GG PGS E+G+R+IEIWN+VFMQF + LPK S+DTGMGLER+ Sbjct: 181 VFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSADGTMASLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+IDLF++LI+A+ QV G + + + RVI DH+RS SF+I DG++P+ Sbjct: 241 AAILQGVHSNYEIDLFQNLIKAAAQVVGTQD--LSAQSLRVIADHIRSCSFMIVDGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ AL EMG AYPEL + K + L Sbjct: 299 NEGRGYVLRRIIRRAIRHGNKLGQKGVFFHKLVEALDVEMGEAYPELTKLKERVAAILLK 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD+G+ +L+ +S LG +++ G+ FKLYDT+G P D+ D+ GL I Sbjct: 359 EEEQFAKTLDQGMKILEEAISGLGDQKVIPGETVFKLYDTYGFPADLTNDVARENGLE-I 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A++ QR+RAR+ S + GAT+F GY L G Sbjct: 418 DEAGFEVAMDAQRARARSASNFSMDMSGSVSV------DGATEFTGYSNLNG-------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V+ I+ +GE V +GQ VV +TPFY E+GGQ+GD G Sbjct: 464 ---------------QSAVEQIIVEGESVSSLQAGQTGLVVLAETPFYGESGGQVGDQGW 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G K + +HH V G L + +D R ++NHSATHLL Sbjct: 509 LRGPAA--AKVTNTTKQGKVHLHHVDVREGTLAVGDLVTTEVDRSLRNATALNHSATHLL 566 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + P+ LRFD +H + +T+AE + +ED VN+ + N VVT + Sbjct: 567 HEALRRVLGDHVQQKGSLVNPERLRFDFSHFEGMTAAEFEQVEDMVNEQVRLNHEVVTEV 626 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A A GA AL G KY +VRV+++ G +S LCGGTHVS TG+I L IVSE Sbjct: 627 MDIDSAKAKGAQALFGEKYESQVRVLTM----GADYSIELCGGTHVSRTGDIGLFKIVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I +G+RRIEA+TG+ A + L +A K S+ + +V + ++ R LQ Sbjct: 683 GGIASGVRRIEALTGKAAIDATRHTETALGKIAGLFKASKEAALDKVVALNDQARALQKE 742 Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K ++ I + + D K L+ ++D L+ K++S +I+L Sbjct: 743 LDVLKGKMAALAGADLASQAVDINGGKLLVAQVEVEDPKALRDLLDELKSKLESAVILLA 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT++L A DL ++ A + G GGGRP MAQ+GG N A Sbjct: 803 AV-NDGKVSLIAGVTKELTKNVKAGDLIKMVAPYV-DGKGGGRPDMAQAGGNNPEGLSAA 860 Query: 889 IAGVASFLKK 898 + V ++ + Sbjct: 861 LELVPGWVAE 870 >gi|262401750|ref|ZP_06078316.1| alanyl-tRNA synthetase [Vibrio sp. RC586] gi|262352167|gb|EEZ01297.1| alanyl-tRNA synthetase [Vibrio sp. RC586] Length = 860 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 386/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ + G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K HH ++ +G+L + +D Q R +S+NHSATHL Sbjct: 510 VLKTEAGIFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSI-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A ++ Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT DL + A +L + A + GG GGGRP MAQ+GG + Sbjct: 790 GNVA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAQALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|83747684|ref|ZP_00944719.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551] gi|83725594|gb|EAP72737.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551] Length = 880 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 380/917 (41%), Positives = 535/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 61 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G I GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 181 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 418 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GYD L Sbjct: 419 E-NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLVRE 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+ GQ VV D TPFYAE+GG Sbjct: 472 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 509 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 510 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 570 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 630 AATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 683 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 743 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K++ Sbjct: 744 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861 Query: 882 GNKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 862 PDKLPQALAGVTAWVQQ 878 >gi|56414779|ref|YP_151854.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363707|ref|YP_002143344.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|59798481|sp|Q5PF17|SYA_SALPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56129036|gb|AAV78542.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095184|emb|CAR60735.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 876 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 392/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+E +++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDETYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEVGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + ++ ++ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLVSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|229530358|ref|ZP_04419746.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)] gi|229332131|gb|EEN97619.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)] Length = 860 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGNIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|315181173|gb|ADT88087.1| alanyl-tRNA synthetase [Vibrio furnissii NCTC 11218] Length = 860 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 380/906 (41%), Positives = 537/906 (59%), Gaps = 59/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY D+EAF +W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ V G Y+ + + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L E L+G+ FKLYDT+G P D+ D+ RG Sbjct: 361 IEEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+EEQR RAR G + L + GAT+F GY +G Sbjct: 419 IDEAGFEAAMEEQRQRAREA------GHFGTDYNQLIKVEGATEFCGYSATQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + +G+ +G K +V ++TPFYAE+GGQ GD G Sbjct: 466 ----------------ESTITEMFVEGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ G+ ++ +D + R +S+NHSATHL Sbjct: 510 VLKTDAGVFHVVDTQKLGN-AIAHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + +GLRFD +H + +++AELK +E VN+ + N + T Sbjct: 569 LHAALRRVLGEHVMQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY+++VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG+ A +L Q + + ++ + + + +E + L+ Sbjct: 684 ESGIAAGIRRIEAVTGEAALDYLDAQHAQ-------FESKVADMASKAKGLEKEIQHLKD 736 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A ++ IA V + + D+K L+ ++D L+ ++ SGIIML ++ Sbjct: 737 KLAAKESASLTS--KVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLGNVA- 793 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A+ V Sbjct: 794 DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAVALPSALESV 852 Query: 893 ASFLKK 898 +++ + Sbjct: 853 DAWIAE 858 >gi|300704797|ref|YP_003746400.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957] gi|299072461|emb|CBJ43811.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957] Length = 880 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 380/917 (41%), Positives = 535/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 61 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G I GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 181 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 418 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GYD L Sbjct: 419 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMTAGT------LDYTGDKTTFHGYDQLVRD 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+ GQ VV D TPFYAE+GG Sbjct: 472 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 509 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 510 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 570 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 630 AATNAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 683 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRVSEAAAALRAQPSELTQRIVQVQDQ 743 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K++ Sbjct: 744 VKSLEKELERLKSKLAASQGDELVEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861 Query: 882 GNKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 862 PDKLPQALAGVTAWVQQ 878 >gi|78357417|ref|YP_388866.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552081|sp|Q30YS5|SYA_DESDG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78219822|gb|ABB39171.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 880 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 392/908 (43%), Positives = 544/908 (59%), Gaps = 44/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEFF+KNGHE++ SSSL+P +DPTL+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRHRFLEFFRKNGHEVVDSSSLVPNDDPTLLFTNAGMVQFKKIFLGQEKRAYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW +T+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWSFITEELKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LYIT+Y +D+EA KLW+ ++G+ +++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKEKLYITIYRDDDEAEKLWQSVAGVPSERIYRLGEKDNFWSMGDTGPCGPCSEIHIDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + G + +R++EIWNLVFMQ++Q R LP IDTGMGLER+A V Q Sbjct: 181 ADMACGPDCGIGKCDCDRFLEIWNLVFMQYDQAPDGTRTPLPNPCIDTGMGLERIAAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 +N+D DLF+ I + ++ G+ Y + RVI DH R+ +F+IADGILP+NE Sbjct: 241 NVRSNFDCDLFQAFINYTAELAGVSYRKDSEDTDTALRVIADHSRAIAFMIADGILPSNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + RL+G + + EMG A+PEL++ K + +R E+ Sbjct: 301 GRGYVLRRLIRRAYRFGRLIGLEGSYLYKTALKVVEEMGGAFPELLENKDFMARVVREEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF KTLD+GL+LL+ LS L + GDVAFKLYDT G PLDI+ DI RG + + Sbjct: 361 ERFNKTLDKGLLLLEDELSALTARNSTCVAGDVAFKLYDTFGFPLDIVNDIAEKRGFS-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + ++EQ+SRA+A G G T + +L E+ A++F+GYD L Sbjct: 420 DEDGFKKLMQEQKSRAKAAWKGGGEQTLAARFQALLEEGIASEFVGYDHL---------- 469 Query: 474 KVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + A++ + E VE +G +V +TPFY E+GGQLGDTG Sbjct: 470 -------------SAESRIIALLGEDMESVEALPAGAAGYLVSTRTPFYGESGGQLGDTG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 A+ + ++TD K + + VH V +G L + ++ LT+ R + NH+ TH+ Sbjct: 517 DAVSETGSAEVTDTLKPSAKLLVHVVKVSQGELLRDQAVTLTVREGQRFASARNHTCTHI 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + P+ LRFD TH +T E+ ++E+ VN +I ++ + + Sbjct: 577 LHAALRKVLGDHVKQAGSLVGPERLRFDFTHISAMTPEEILAVENEVNRVILSDIALNSE 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M +DA+ GA AL G KY VRVVS+ S LCGGTH+ +TG+ YI S Sbjct: 637 HMAYDDAVQKGAMALFGEKYESEVRVVSIPG-----ESVELCGGTHLRATGQAGSFYITS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+TG A M Q +L +A +K G++ GRV+ + +E R L+ Sbjct: 692 ESGVAAGVRRIEAVTGWDAVRLFMQQRAELHEVAGLVKGKPGDIAGRVKTLQKEVRTLKK 751 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K Q S ++ V ++ + + K L+ VMD ++ K+ SG+ L Sbjct: 752 DMEKLAAQAASGKGRNLMDSVEEVNGVKLLAASLPGANVKALREVMDDVRSKLTSGVACL 811 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V + + K +LI V++DL DRF A L + A + GG GGGRP MAQ+GG + + Sbjct: 812 VAVDGD-KVHMLIAVSKDLHDRFTAPALIKDVAARI-GGSGGGRPDMAQAGGTDPQGVED 869 Query: 888 AIAGVASF 895 A A + Sbjct: 870 AFACLRQI 877 >gi|253689580|ref|YP_003018770.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756158|gb|ACT14234.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 875 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 387/910 (42%), Positives = 540/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG P E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLFK LI+A G + RVI DH+RS +FLIADG+ Sbjct: 243 RISAVLQHVNSNYDIDLFKTLIEAVANAVGTTD--LTNKSLRVIADHIRSCAFLIADGVT 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAAELKKQQSVVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F +TL+RGL LLD + +L + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+ QR RAR + SL T F GY+ + Sbjct: 420 -VDEEGFEAAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V++ +G + V+ ++TPFY E+GGQ+GD Sbjct: 467 -----------------QAKVIALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H + +G LR S+ +D Q R ++ +NHSATH Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH S TG+I L I+ Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743 Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + +++ V + + VD K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVSGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 804 L-GTVAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|254226851|ref|ZP_04920422.1| alanyl-tRNA synthetase [Vibrio cholerae V51] gi|125620648|gb|EAZ49011.1| alanyl-tRNA synthetase [Vibrio cholerae V51] Length = 860 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 389/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G + +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEISTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFYVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|241662427|ref|YP_002980787.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D] gi|240864454|gb|ACS62115.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D] Length = 893 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 377/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 14 MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 73 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 74 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 134 AEKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G + GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 194 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL +A+ + Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 371 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E LR+E+ RF +T++ G+ +LD L L ++L+G++AFKL+DT+G PLD+ QD+ Sbjct: 372 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 431 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GY+ L Sbjct: 432 E-NDVIVDEAAFDAAMTRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLVRE 484 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+E GQ VV D TPFYAE+GG Sbjct: 485 ----------------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 522 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 523 QVGDQGTLKAATVWFDVVDTLKLQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 582 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LGSHV Q GS + + RFD +H+ P+T +++ +E VN I N Sbjct: 583 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 643 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IVSES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 697 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIVQVQDQ 756 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K+Q Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L ++ + K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 817 TAAIVLGSVT-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874 Query: 882 GNKADQAIAGVASFLKK 898 + QA+AGVA+++++ Sbjct: 875 PDNLPQALAGVAAWVQQ 891 >gi|229512814|ref|ZP_04402281.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21] gi|229350063|gb|EEO15016.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21] Length = 860 Score = 904 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 544/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGSEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T+ + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATDDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|309780932|ref|ZP_07675671.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA] gi|308920235|gb|EFP65893.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA] Length = 880 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 378/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 61 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 RL+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 121 AERLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G + GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 181 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL +A+ + Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E LR+E+ RF +T++ G+ +LD L L ++L+G++AFKL+DT+G PLD+ QD+ Sbjct: 359 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 418 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GY+ L Sbjct: 419 E-NDVIVDEAAFDAAMTRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLVRE 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+E GQ VV D TPFYAE+GG Sbjct: 472 ----------------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 509 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 510 QVGDQGTLKAATVWFDVVDTLKVRPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LGSHV Q GS + + RFD +H+ P+T +++ +E VN I N Sbjct: 570 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 630 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 683 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IVSES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 684 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAVLRAQPSELTSRIVQVQDQ 743 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K+Q Sbjct: 744 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L ++ + K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 TAAIVLGSVT-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861 Query: 882 GNKADQAIAGVASFLKK 898 + QA+AGVA+++++ Sbjct: 862 PDNLPQALAGVAAWVQQ 878 >gi|22124793|ref|NP_668216.1| alanyl-tRNA synthetase [Yersinia pestis KIM 10] gi|45440238|ref|NP_991777.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108810954|ref|YP_646721.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|145600311|ref|YP_001164387.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|153997648|ref|ZP_02022748.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|162420472|ref|YP_001605466.1| alanyl-tRNA synthetase [Yersinia pestis Angola] gi|165925794|ref|ZP_02221626.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936759|ref|ZP_02225326.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. IP275] gi|166010167|ref|ZP_02231065.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213026|ref|ZP_02239061.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398342|ref|ZP_02303866.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421632|ref|ZP_02313385.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423275|ref|ZP_02315028.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467648|ref|ZP_02332352.1| alanyl-tRNA synthetase [Yersinia pestis FV-1] gi|218930326|ref|YP_002348201.1| alanyl-tRNA synthetase [Yersinia pestis CO92] gi|229838925|ref|ZP_04459084.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896406|ref|ZP_04511574.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|229899492|ref|ZP_04514633.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229901170|ref|ZP_04516293.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|270489353|ref|ZP_06206427.1| alanine--tRNA ligase [Yersinia pestis KIM D27] gi|20532253|sp|Q8ZBT8|SYA_YERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122385127|sp|Q1CLK9|SYA_YERPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830294|sp|A9R0V7|SYA_YERPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830295|sp|A4TQ52|SYA_YERPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21957617|gb|AAM84467.1|AE013691_6 alanyl-tRNA synthetase [Yersinia pestis KIM 10] gi|45435094|gb|AAS60654.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108774602|gb|ABG17121.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|115348937|emb|CAL21896.1| alanyl-tRNA synthetase [Yersinia pestis CO92] gi|145212007|gb|ABP41414.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|149289285|gb|EDM39365.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|162353287|gb|ABX87235.1| alanyl-tRNA synthetase [Yersinia pestis Angola] gi|165915408|gb|EDR34018.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. IP275] gi|165922406|gb|EDR39583.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991074|gb|EDR43375.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205813|gb|EDR50293.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960551|gb|EDR56572.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050846|gb|EDR62254.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057445|gb|EDR67191.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681895|gb|EEO77988.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|229686984|gb|EEO79059.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229695291|gb|EEO85338.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700480|gb|EEO88511.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|270337857|gb|EFA48634.1| alanine--tRNA ligase [Yersinia pestis KIM D27] gi|320016499|gb|ADW00071.1| alanyl-tRNA synthetase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 875 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 391/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SS+L+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + SL A+QF GYD ++ Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +TD QK H I+ G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q S I V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 AALASVEAWV 871 >gi|297580680|ref|ZP_06942606.1| alanyl-tRNA synthetase [Vibrio cholerae RC385] gi|297535096|gb|EFH73931.1| alanyl-tRNA synthetase [Vibrio cholerae RC385] Length = 860 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 391/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGASFHKLVGPLAEVMGTAGAELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|117923331|ref|YP_863948.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1] gi|205830136|sp|A0L3J9|SYA_MAGSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117607087|gb|ABK42542.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1] Length = 878 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 393/908 (43%), Positives = 558/908 (61%), Gaps = 44/908 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + IR F+ FFQ++GH + SSSL+P NDPTL+FTN+GMV FK++F G+E+ Y Sbjct: 1 MNGNEIRKRFVAFFQQHGHTHVESSSLVPRNDPTLLFTNAGMVQFKSLFLGEERRDYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+L W +T++ +D Sbjct: 61 VSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIRLGWRFVTEDLGID 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +RL +TVY ED+EA+ +W + GL ADK+IRI T DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 121 AQRLLVTVYSEDDEAYAIWTQQIGLPADKVIRIPTTDNFWSMGDTGPCGPCSEIFYDYGD 180 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS E+G+R++EIWNLVFMQ+++ + LPK SIDTG GLER+A+VLQ K Sbjct: 181 TVAGGPPGSEDEDGDRFVEIWNLVFMQYDRSSDGTLTPLPKPSIDTGAGLERLASVLQGK 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGR 297 TNNYD DLF+ LI+A+ + G+ + + RVI DH+RS SFLIADG+LP+NEGR Sbjct: 241 TNNYDTDLFQPLIKAAAALAGVDDTTCSAEQLVSLRVIADHIRSVSFLIADGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRR M + RLLG +P M L+ L MG YPEL + + + +E++R Sbjct: 301 GYVLRRIMRRGMRHGRLLGLEQPFMHKLVETLGALMGDTYPELTAQRKTLAMVIETEEKR 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL GL L+ ++ L ++L+G F LYDT G PLD+ DIL R G+D Sbjct: 361 FAATLGTGLKHLEEAVAGLRMGDVLDGKTLFTLYDTFGFPLDLTADILRDR-EIGVDQEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ ++EQR RARA G G + ++ L E+ GA++F+GY Sbjct: 420 FSACMKEQRERARAAWSGSGEASLGALYHPLLERVGASEFLGY----------------- 462 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIG 536 + S+ V A+++ G VE +G + VV +QTPFY E+GGQ+GD G + Sbjct: 463 ------VHESASASVVALIKNGAEVESLTAGDEGSVVCNQTPFYGESGGQVGDRGVIQLA 516 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G R +TD QK + VHH + G + L +D R+ + ++HSATHL+HHA Sbjct: 517 NGARFTVTDTQKPLPDLIVHHGKMVTGTVHLGDHAELQVDGATRQAIRLHHSATHLMHHA 576 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS ++ + LR D +H + ++ EL+++ED VN I N+ T +M Sbjct: 577 LRAVLGEHVKQAGSHVSAERLRLDFSHFQGMSEEELRAVEDRVNGAILSNVSQETAVMTP 636 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+A+GA AL G KY D VRVV + S LCGGTHVS +G++ + +I+SES++ Sbjct: 637 QEAVAAGAMALFGEKYGDEVRVVRIGD------SMELCGGTHVSRSGDMGIFHILSESAV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RR+EA+ G RAR+ G E LK+ A+ LK + +E + + ++L+ K Sbjct: 691 AAGVRRLEAVCGGRARAIFRGDQEALKAAAALLKTQPNKLAEGIERLLGKQKELEKSLEK 750 Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + + ++ + ++ + VD K L+ ++D ++ K+ SG+I+L Sbjct: 751 LQSAQAGGMVEALLEQAVEVGGIKLLAVEVKGVDGKALREMVDQVKDKLGSGVILLA--L 808 Query: 832 KEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K S++ VT+DL R A DL +A ++ GG GGGRP MAQ GG + Sbjct: 809 GGDKVSLVAGVTKDLAGKRVKAGDLMAFAAAMV-GGKGGGRPDMAQGGGTEVAAIPTMLT 867 Query: 891 GVASFLKK 898 + +L++ Sbjct: 868 AIPGWLQE 875 >gi|319899070|ref|YP_004159163.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73] gi|319403034|emb|CBI76589.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73] Length = 887 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 474/910 (52%), Positives = 629/910 (69%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+TFL++F NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK Y+ Sbjct: 1 MNSVNSIRSTFLDYFHHNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKYPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D A +LW+KISGL +KIIRI TNDNFWSM + GPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHTDNVAAELWRKISGLPDEKIIRIATNDNFWSMGDIGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIFGGPPGSAYENGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI+AS+++TG++ G I +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFCKLIRASQEITGVEATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM HLLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMGHLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + +G+VAFKLYDT+G P+D+ QD+L RG +DI +F Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPIDLTQDVLRRRG-ISVDIDAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE +WFS++++ G T+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASMTETVWFSIRDQVGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A+V G+IV+ SGQ +V +QTPFYAE+GGQ+GD+G + Sbjct: 462 -----TEKAEGVITALVCDGKIVDHVFSGQDAMLVVNQTPFYAESGGQIGDSGVICSESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q++ EG+F+H V+ G + + L ID RR++ NHSATHLLH AL Sbjct: 517 VFEVHDTQRRGEGVFIHIGKVKSGQAKISDCVELIIDSGRRRKIRANHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS ++PD LRFD +H K I+S ELK +ED NDI+ +N V T +M +DA Sbjct: 577 ILGPHVAQKGSLVSPDRLRFDFSHPKSISSEELKRVEDLANDIVLRNSKVTTHLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ S LCGGTHV TG+I L++IV+ES Sbjct: 637 IFEGAMALFGEKYGDEVRVVSMGERCEPTELKKRWSIELCGGTHVQRTGDIGLIHIVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI +G+RRIEA+TG AR +L QD+++ +ASFLK S NV RV ++++ RKL+ Sbjct: 697 SIASGVRRIEALTGTTARLYLSKQDKRIYEIASFLKASPANVEERVRNLFDDRRKLEKEL 756 Query: 775 AKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + L + I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NDTRKSVVLNGRALQGRKENITIINGISFMGGVLRNIAVRDLKTLVDSGKKQIESGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +S++ K S ++ VT+DL + NAVDL R+ + VLGG GGGGRP MAQ+GG G+KAD+ Sbjct: 817 ISVSEDGKGSAVVGVTDDLTNMLNAVDLVRVISVVLGGQGGGGRPDMAQAGGSKGDKADE 876 Query: 888 AIAGVASFLK 897 AI + +FLK Sbjct: 877 AITALKAFLK 886 >gi|300023633|ref|YP_003756244.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299525454|gb|ADJ23923.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 897 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 451/919 (49%), Positives = 619/919 (67%), Gaps = 47/919 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ VS+IR++FL++F KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTGQE Sbjct: 1 MAGVSAIRSSFLDYFAKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGQETRAIPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+LLTK+F L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLLTKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +T+Y D++A+K+WKK++G S D+IIRI ++DNFW M +TGPCGPCSEIFFD G Sbjct: 121 DAKRLLVTIYHTDDDAYKIWKKVTGFSDDRIIRIASSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS + EG+R+IEIWNLVFMQFEQ+ +R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DKIPGGPPGSPDSEGDRFIEIWNLVFMQFEQRAPGDRIDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGI 290 K +NY+IDLF++LIQ+ Q V RVI DHLRS+SFLIADG+ Sbjct: 241 KHDNYEIDLFENLIQSIRQEAAKTGAKETGGDASPEFLNVARRVIADHLRSTSFLIADGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRIMRRAM YA +G +PLM L+P+L EMG AYPEL++A+ LI ET Sbjct: 301 LPSNEGRGYVLRRIMRRAMRYAHQMGCHDPLMHLLVPSLVREMGDAYPELVRAQPLITET 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L+ E+ +F +TLD GL LL + + K + GDVAFKLYDT G PLD+ +D L RG Sbjct: 361 LKLEETKFKRTLDNGLKLLGESSASIKKGAVFPGDVAFKLYDTFGFPLDLTEDALKPRG- 419 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D +F+ A+++Q+ A+A G G TE +WF +K+K GA++F+GYD Sbjct: 420 ISVDTNAFDAAMKKQKDAAKAAWKGSGEAATEGLWFEIKDKVGASEFLGYD--------- 470 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 T IV A+V G+ + +G + ++ +QTPFY E+GGQ+GD Sbjct: 471 --------------TETAEGIVAALVANGKDADTLKAGDEGALILNQTPFYGESGGQVGD 516 Query: 531 TGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G G ++TD QKK +FVH VE G ++ + +D+ R NHSA Sbjct: 517 QGVIKGAKGALFRVTDTQKKLGDLFVHFGKVEAGSFTAGDAVEIEVDHARRTATRANHSA 576 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG+HV+Q GS ++PD LRFD +H+KP+++ E+K++ED N ++ +N PV Sbjct: 577 THLLHEALRQVLGTHVAQKGSLVSPDRLRFDFSHTKPMSAEEIKAVEDMANAVLLENTPV 636 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIM 706 VTR+M ++A ASGA AL G KY D VRVVS+ G S LCGGTHV+ TG+I Sbjct: 637 VTRLMALDEARASGAMALFGEKYGDEVRVVSMGSTRPGANKAWSVELCGGTHVTRTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ +V+ES AG+RRIEA+TG+ AR++L QD +++ AS LK +++ R++ + EE Sbjct: 697 LVRVVAESGSAAGVRRIEALTGEGARAYLDEQDARVREAASVLKTRPEDLIERLKHLVEE 756 Query: 767 YRKLQLIHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + L+ A K +L + + I +V ++ + ++ K+L+ ++D + Sbjct: 757 RKVLEKQLADAKRKLALGGGVNGASDGADAIRSIGNVKLLARTVQGLNPKDLRGLIDDGK 816 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K++ SGI+ +VG++++ KA + + VTEDL+ ++AVDL + A+ LGG GGGGRP MAQ+ Sbjct: 817 KQVGSGIVAIVGVTEDGKAGLAVGVTEDLVKSWSAVDLVKAGAEALGGKGGGGRPDMAQA 876 Query: 878 GGPNGNKADQAIAGVASFL 896 GGP+G KA A+ + + L Sbjct: 877 GGPDGAKAGDALKAIEARL 895 >gi|307945634|ref|ZP_07660970.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4] gi|307771507|gb|EFO30732.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4] Length = 888 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 476/910 (52%), Positives = 628/910 (69%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F KN HE++ S L+P NDPTLMF N+GM FKNIFTG EK Sbjct: 1 MTGVNDIRSTFLDYFSKNSHEVVESGPLVPRNDPTLMFANAGMNQFKNIFTGLEKRECSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L Sbjct: 61 AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TV+ ED+EA LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PADRLLVTVFAEDDEAAVLWKKIAGLSDDKIIRIATSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ + R LP+ SIDTGMG+ER+AT+LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQLADK-RVDLPRPSIDTGMGIERLATILQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLFK LI ASE TG++ G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 240 VHNNYDIDLFKALISASEHETGVEASGDALSSHRVIADHLRSTSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG +PLM L+P+L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELGRAEALISETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L + L+G+ AFKLYDT+G PLD+ QD L RG +D F+ Sbjct: 360 KTLERGLGLLDTASGDLFEGGQLDGETAFKLYDTYGFPLDLTQDALRTRG-ISVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE IWF+LK+K GAT F+GY+ Sbjct: 419 SAMERQKAEARAAWSGSGGAVTETIWFALKDKVGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +VK +V V++ SGQ+ VV +QTPFY E+GGQ+GD G IG+G+ Sbjct: 461 -----TETAEGVVKGLVADDAQVDKLNSGQEGFVVLNQTPFYGESGGQVGDAGLMIGEGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+ ++DVQKKA+G+FVH VE G L + L L +D+ R + NHSATHL+H AL Sbjct: 516 RVTVSDVQKKADGLFVHAVKVEDGTLTLDQPLELKVDHARRTAIRSNHSATHLVHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS ++P+ LRFD +H KP++ EL E N+I+ QN PV TR+M +DA Sbjct: 576 VLGTHVAQKGSMVSPERLRFDFSHPKPLSDEELAVTEKFANEIVLQNAPVETRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I +GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I L+ +VSE+ Sbjct: 636 IEAGAMALFGEKYGDEVRVVSMGTALHGEKEGKPYSLELCGGTHVKRTGDIGLVTLVSEA 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG AR++L QD+++K +A+ LK +V RV ++ E+ RKL+ Sbjct: 696 AVAAGVRRVEALTGSEARAYLDAQDKRVKEVAAILKSGMADVPARVAQLVEDRRKLEKEL 755 Query: 775 AKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + I V M ++ +++K+LK ++D + +I SG+++L Sbjct: 756 QEAKKKLAMGGGAGGDAGGAVKTIGSVQLMGRVVEGINAKDLKGMVDEAKTQIGSGVVVL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KAS++ VT+DL+++ +AVDL RL ++ LGG GGGGRP MAQ+GGP+G+KA+ Sbjct: 816 ISTGEGGKASIVTGVTKDLVEKVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDGSKAED 875 Query: 888 AIAGVASFLK 897 AI + L+ Sbjct: 876 AIKAIEGHLE 885 >gi|205830265|sp|Q11IW3|SYA_MESSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 887 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 468/894 (52%), Positives = 623/894 (69%), Gaps = 37/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL+FF+KNGHE++ S L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D +RL +TVY D+EA W+KI+GL ++IIRI T+DNFW+M +TGPCGPCSEIFFD Sbjct: 121 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+EQ + ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLFK LI A+E+ G++ EG +++VI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL +G+ + L+G+ AFKLYDT+G PLD+ QD L RG+ +D+ FN Sbjct: 361 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE +WFS+K++ GAT F+GY+ Sbjct: 420 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V+ G +VE A G++V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 462 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I + QKK EG+FVH V++G +R + L +D++ R ++ NHSATHLLH AL Sbjct: 517 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + PD LRFD +H KPI EL+ IED N+++ QN PVVTR+M +DA Sbjct: 577 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV++TG+I L++I+ E Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG AR +L Q+ +LK+ AS LKVS G+++ R+E + EE RKL+ Sbjct: 697 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 756 Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ + +L + ++ V F+ ++ + K+LK + D +K + SG+++ Sbjct: 757 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 VG S+E KASV++ VT+DL RF+AVDL R ++ +GG GGGGRP MAQ+GGP+ Sbjct: 817 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 870 >gi|254230499|ref|ZP_04923872.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] gi|262393294|ref|YP_003285148.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] gi|151936971|gb|EDN55856.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] gi|262336888|gb|ACY50683.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] Length = 860 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 380/911 (41%), Positives = 541/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGVLAEVMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGYTGTKG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ----------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 EIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I S Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG+ A + Q+ K + ++ E ++ + L+ Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE--------------KLAESAQKAKALEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + ++ + + DSK L++++D ++ ++ SG+++L Sbjct: 730 EVQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT+DL + A DL ++ A+ + GG GGGRP MAQ+GG + + + Sbjct: 790 ANVTGD-KVGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPE 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIKTVQPWLEE 858 >gi|238784094|ref|ZP_04628108.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] gi|238714940|gb|EEQ06938.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] Length = 875 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 551/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLITAVADVTGATDF--SSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELNKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + SL A+QF GYD + Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHV-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + G+ V+E +G++ VV +QTPFY E+GGQ+GDT Sbjct: 465 ---------------HQQATVTALFRNGQAVDEIHAGEEAVVVLNQTPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFVVADTQKYG-QAIGHLGKLTHGTLRVNHSIDAQVDATRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +NLP+ T Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+S+ G S+ LCGG H S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKADTHNLADKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q S + V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 SALASVEAWV 871 >gi|110834659|ref|YP_693518.1| alanyl-tRNA synthetase [Alcanivorax borkumensis SK2] gi|110647770|emb|CAL17246.1| (alanyl-tRNA synthetase) [Alcanivorax borkumensis SK2] Length = 900 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 386/903 (42%), Positives = 534/903 (59%), Gaps = 46/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL++F GH + SSSL+P NDPTL+FTN+GM FK++F G+E Y Sbjct: 38 MKSAELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRA 97 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT L Sbjct: 98 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLP 157 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G Sbjct: 158 EERLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 216 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS++E +RYIEIWNLVFMQ+++Q E LPK S+DTGMGLER+A VLQ Sbjct: 217 DVPGGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGV 276 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ L+QA+ + TG + RVI DH+RS+SFLI DG++P+NEGRGYV Sbjct: 277 HSNYEIDLFQALLQAAAKATGCTD--LEEKSLRVIADHIRSASFLICDGVIPSNEGRGYV 334 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG +P L+ AL EMG AYPEL + + IE+ L +E+E+FG+ Sbjct: 335 LRRIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGR 394 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL G+ +L+ + L +L GDV F LYDTHG P D+ D+ R L+ +D+ F Sbjct: 395 TLAAGMKVLESAIEQLD-GRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEA 452 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ QR RAR G+G+ + T F GY+ L Sbjct: 453 AMAAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKLADDN------------- 493 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V A+ + G V+ +G++ VV D+TPFYAE+GGQ+GDTG I D R Sbjct: 494 ----------TVVALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEAR 543 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +TD +K+ VH G L + +D R + NHSATHL+H AL + Sbjct: 544 FMVTDTRKRQA-AHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNV 602 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS ++ D LRFD +H + ++ A+ + IE VN I N V T +M+ E A Sbjct: 603 LGEHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAR 662 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY+D+VRV+S+ S LCGGTHV+ TG+I L I E+S AG+ Sbjct: 663 EAGAMALFGEKYDDQVRVLSMGS---DGFSKELCGGTHVNRTGDIGLFRITLEASAAAGV 719 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A + + Q+ L +A+ +K S N RV ++ R+L+ + K + Sbjct: 720 RRIEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQK 779 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L I V ++ I D K L+ MD L+ K+ S +I+L + E K Sbjct: 780 LASGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGE-K 838 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ VT+DL ++ A DL + A+ + G GGGRP MAQ GG N A+ V ++ Sbjct: 839 VALVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAW 897 Query: 896 LKK 898 + + Sbjct: 898 VAE 900 >gi|312884640|ref|ZP_07744343.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367732|gb|EFP95281.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] Length = 860 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 374/911 (41%), Positives = 538/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLQFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ L Sbjct: 63 TSSQRCLRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIAFAWEFLTEILKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W + G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFNIWNQQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V ++ + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVISVED--LSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGTFFFKLVGVLADVMGSAGEELKRQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L D+ L+G+ FKLYDT+G P D+ D+ RG Sbjct: 361 IEEENFGRTLERGMAILNDALD-ASADKTLDGETVFKLYDTYGFPADLTNDVARERGFI- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+E QR RAR +G + + AT+F GY Sbjct: 419 IDEAGFEQAMEVQRQRAR------DAGQFGTDYNEAIKVDSATEFCGYTSTSAL------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V A+ + VE +G K +V D+TPFYAE+GGQ GD+G Sbjct: 467 -----------------GTVDAMFVESRQVESLSAGDKAVLVLDETPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK H+ ++ G+L ++ + +D R +S+NHSATHL Sbjct: 510 QICTDSGIFVVEDTQKLGN-AIAHYGWMKEGVLASKDKVEALVDKGRRNAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + D LRFD +H + +T+ E+K +E VND + N V T Sbjct: 569 LHAALRKVLGEHVTQKGSLVKADNLRFDFSHLEAMTADEIKQVERLVNDHVRLNHDVETD 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A + GA AL G KY+D+VRV+S+ G S+ LCGG HVSSTG+I L I S Sbjct: 629 IMDIESAKSKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHVSSTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG A + Q ++ + ++ E ++ + L+ Sbjct: 684 ESGIAAGIRRIEAVTGDAALDVIEAQHQQYEE--------------KLAESAQKTKALEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + + ++ V + + DSK L++++D ++ ++ SG+++L Sbjct: 730 EIQKLKDKMAAAESANIMGQVKEVNGVKVLVAKLEGADSKNLRTMVDDIKNQLGSGVVLL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++++ K ++ VT+DL+ A +L ++ A+ + GG GGGRP MAQ+GG + Sbjct: 790 ANVNQD-KIGLIAGVTKDLVGDVKAGELVKMVAEQI-GGKGGGRPDMAQAGGTDVTALPT 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIDSVQPWLEE 858 >gi|254427911|ref|ZP_05041618.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881] gi|196194080|gb|EDX89039.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881] Length = 866 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 382/903 (42%), Positives = 534/903 (59%), Gaps = 47/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL++F GH +PSSSL+P NDPTL+FTN+GM FK++F G+E Y Sbjct: 1 MKSAELRQAFLDYFASQGHTKVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGRESRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G Sbjct: 121 EDRLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS E+ +RYIEIWNLVFMQ+++Q E LPK S+DTGMGLER+A VLQ Sbjct: 180 HVPGGPPGSEGEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ L+QA+ + TG + + RVI DH+RS+SFLI DG++P+NEGRGYV Sbjct: 240 HSNYEIDLFQALLQAASKATGCQD--LEEKSLRVIADHIRSASFLICDGVIPSNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG +P ++ AL +MG AYPEL + + IE+ L +E+E+FG+ Sbjct: 298 LRRIIRRALRHGHKLGQDKPFFSTMVSALVEQMGEAYPELGREQARIEKALLAEEEQFGR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL G+ +L+ + L ++L G+V F LYDTHG P D+ D+ R L +D+ F Sbjct: 358 TLAAGMKVLESAIEQLD-GKVLPGEVLFNLYDTHGFPPDLTADVARERALT-VDMDGFET 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ QR RAR G+G+ + T F GY+ L Sbjct: 416 AMAAQRERAR------GAGSFANDYSDRLNIDAVTDFSGYEKLADDDA------------ 457 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DG 538 V A+ + G+ VE +G++ VV +TPFYAE+GGQ+GDTG +G D Sbjct: 458 -----------VVALYKDGDAVETLNAGEEGMVVLARTPFYAESGGQVGDTGALMGGDDS 506 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +K + VH +E G L + +D RR + NHSATHL+H AL Sbjct: 507 ETRFLVTDTRKRQAAHVHVGKLESGTLTVGSKVSAYVDVDRRRAVMRNHSATHLMHAALR 566 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + D LRFD +H + ++ A+ + IE VN I N V T +M+ + Sbjct: 567 DVLGEHVQQKGSLVAADYLRFDFSHGEAVSEAQREQIEILVNRQILANTAVTTELMDIDA 626 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A +GA AL G KY+D+VRV+S+ S LCGGTHV+ TG+I L I E+S A Sbjct: 627 AREAGAMALFGEKYDDQVRVLSMGS---DGFSKELCGGTHVNRTGDIGLFRITLEASAAA 683 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG+ A + + Q+ L +A+ +K S N RV ++ R+L+ + K Sbjct: 684 GVRRIEAVTGEHALAVMRQQERALSEIAATVKSSPDNAADRVRSQAQKVRELEKEIERLK 743 Query: 779 LQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +L + V ++ I DSK L+ MD L+ K+ S +I+L + + Sbjct: 744 QKLASGAGGDLTSEVQDVNGVKVLATQIDGADSKTLRVTMDKLKDKLGSAVILLAAVEGD 803 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ VT+DL R+ A DL + A+ + G GGGRP MAQ GG N A+ V Sbjct: 804 -KVALVAGVTKDLTARYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVK 861 Query: 894 SFL 896 ++ Sbjct: 862 GWV 864 >gi|71908916|ref|YP_286503.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB] gi|83305844|sp|Q47AU8|SYA_DECAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71848537|gb|AAZ48033.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB] Length = 871 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 377/909 (41%), Positives = 529/909 (58%), Gaps = 54/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSSEIRQQFLDFFASKGHQIVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+ + L Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EA+ +W K G+ +++IRI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLTVTVYAEDDEAYDIWTKEIGVPVERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGEKYWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERV 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + VLQ NY+IDLF+ L++A+ + + + +V+ DH+R+ SFL+ADG++P Sbjct: 241 SAVLQGVHANYEIDLFQALLKAAAR--ETSDADLDSPSLKVLADHIRACSFLLADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L EMG AYPEL Q + I TL+ Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGMAYPELGQNQAKIVATLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++RF +T++ G+ +L+G L LG+ + NGD AFKL+DT+G PLD+ QDI + Sbjct: 359 EEDRFFETIEHGMAILEGELKSLGEGGVFNGDTAFKLHDTYGFPLDLTQDICREHKITVD 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + A+ Q+ +ARA K+ +L+ AT F GY L Sbjct: 419 AAAF-DAAMARQKEQARAAGKF-------KMATNLEYDGPATTFHGYAALEY-------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V A+ + G V + G+ VV D TPFYAE+GGQ+GD G Sbjct: 463 ---------------KANVLALYKDGIAVNQLNEGEMGVVVLDDTPFYAESGGQVGDCGA 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + D QK +F HH +V+ G + + +D Q R+++ NHSATHLL Sbjct: 508 LQSVHGIFAVEDTQKIQATVFGHHGVVKTGTITVGNGVAAKVDVQARQRIMRNHSATHLL 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD RFD H++P+T E++ +E+ VN I N+ TR+ Sbjct: 568 HKALREVLGDHVQQKGSQVDPDKTRFDFVHNQPMTDEEIRRVENIVNAEILANVATETRV 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + +A GA L G KY D VRV+ + S LCGGTHVS TG+I L I +E Sbjct: 628 LPIAEAQKLGAMMLFGEKYGDDVRVLDIGS------SRELCGGTHVSRTGDIGLFSITAE 681 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RR+EA+TG A +++ + L +A LKV +V GRV + ++ +KL+ Sbjct: 682 GGVAAGVRRVEAVTGDNALAYMQDMESALGGVAGTLKVLPKDVHGRVLAVLDQVKKLERE 741 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K +L + I ++ + D L+ MD L+ K++S I+L Sbjct: 742 LAALKGKLASAQGDDMLSNAVDIKGAKVLAATLEGADVNALRETMDKLKDKLKSAAIVLA 801 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG A Sbjct: 802 SVA-DGKVTLIAGVTADLTGKVKAGELVNLVAQQI-GGKGGGRPDMAQAGGTQPENLPAA 859 Query: 889 IAGVASFLK 897 +A VA +++ Sbjct: 860 LASVAGWVE 868 >gi|238799432|ref|ZP_04642859.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] gi|238716719|gb|EEQ08608.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] Length = 875 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 390/911 (42%), Positives = 551/911 (60%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLITAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKHQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + SL A+QF GYD + Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHV-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDT Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H + G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGKLTHGTLRVNHSIDAQVDVTRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +NLP+ T Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+S+ G S+ LCGG H S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + + Q + L+ +A +K N+ +V + + + L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALVHQQSDLLQDVAHLVKGDTNNLTEKVRAVLDRSKMLE 743 Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q S ++ V + + V+ K L++++D L+ ++ S II+ Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLVSGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861 Query: 887 QAIAGVASFLK 897 A+A V ++++ Sbjct: 862 SALASVEAWVE 872 >gi|261210116|ref|ZP_05924414.1| alanyl-tRNA synthetase [Vibrio sp. RC341] gi|260840881|gb|EEX67423.1| alanyl-tRNA synthetase [Vibrio sp. RC341] Length = 860 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 387/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ + G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K HH I+ +G+L + +D Q R +S+NHSATHL Sbjct: 510 VLKTEAGIFHVEDTHKLGN-AIAHHGILAQGVLAKGDQVEAIVDEQRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETH 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A ++ Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT DL + A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 848 ALESVDAWIAE 858 >gi|157961024|ref|YP_001501058.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345] gi|205830206|sp|A8H1T6|SYA_SHEPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157846024|gb|ABV86523.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345] Length = 875 Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats. Identities = 382/908 (42%), Positives = 542/908 (59%), Gaps = 55/908 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+YD D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYDTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + + G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAAILGVTD--LENKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRS 353 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + + ++E++L++ Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGADAAKGLQETQAIVEKSLKA 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TL+RGL +LD L+ L +L+G+ AFKLYDT+G P+D+ D+ R + + Sbjct: 362 EEEQFARTLERGLGILDAALNELA-TNVLDGETAFKLYDTYGFPVDLTADVCRERDIT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+ S +G E + + F GY L Sbjct: 420 DEAGFEVAMA------AQRSRAQAAGQFETDYNEGLIIDEQSGFTGYTDL---------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V AI + GE V+ V+G V +V D TPFY E+GGQ GD G Sbjct: 464 -------------NNQATVTAIFKAGESVDSIVAGDDVVIVLDNTPFYGESGGQCGDEGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 I DGI +TD QK H V G ++ + +D + R + +NHS THLL Sbjct: 511 LIADGIEFTVTDTQKYG-QAIGHIGRVATGTVKVGQVVTANVDKKLRHRTELNHSVTHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN I +N + + Sbjct: 570 HAALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAHELKEVEELVNTQIRRNHELTAEV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+ VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 MDIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ + L+ Sbjct: 685 GGIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAAALLKGDSASVVAKLKAQLDKTKLLEKE 744 Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K +L + V + + VD+ L+ + D L++K+QSGI++L Sbjct: 745 LSQLKDKLAAATSADLAGEAVDVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I+ E K ++++ VT+DL + A +L A + GG GGGRP MAQ+GG D A Sbjct: 805 -IAGEDKVNMIVGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLDAA 862 Query: 889 IAGVASFL 896 + V ++ Sbjct: 863 LEQVIPWI 870 >gi|269965244|ref|ZP_06179378.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B] gi|269830230|gb|EEZ84457.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B] Length = 860 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 379/911 (41%), Positives = 538/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTATKG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ----------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 EIRTESGVFHVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I S Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG+ A + Q+ K + ++ E ++ + L+ Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE--------------KLAESAQKAKALEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + ++ + + DSK L++++D ++ ++ SG+++L Sbjct: 730 EVQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT+DL + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 790 ANVTGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPE 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIKTVQPWLEE 858 >gi|91227829|ref|ZP_01262002.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01] gi|91188339|gb|EAS74635.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01] Length = 860 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 379/911 (41%), Positives = 539/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ----------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 EIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I S Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG+ A + Q+ K + ++ E ++ + L+ Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE--------------KLAESAQKAKALEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + ++ + + DSK L++++D ++ ++ SG+++L Sbjct: 730 EVQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT+DL + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 790 ANVTGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPE 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIKTVQPWLEE 858 >gi|209964228|ref|YP_002297143.1| alanyl-tRNA synthetase [Rhodospirillum centenum SW] gi|209957694|gb|ACI98330.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW] Length = 898 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 443/897 (49%), Positives = 583/897 (64%), Gaps = 42/897 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 4 KTANEIRATFLDFFKKNGHAVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGNETRPYSRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKE+ L Sbjct: 64 VTAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEYGLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL +TV+ D+EA LWKK++G+ D+IIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 124 KDRLCVTVFHTDDEAADLWKKVAGIGDDRIIRIPTSDNFWMMGDTGPCGPCSEIFFDHGP 183 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQ---QNKQERFILPKMSIDTGMGLERMATVL 237 I GG PGS+E +G+R+IEIWNLVFMQ+EQ ER LPK SIDTGMGLER+A VL Sbjct: 184 HIAGGPPGSAEQDGDRFIEIWNLVFMQYEQFPKDGGHERVPLPKPSIDTGMGLERLAAVL 243 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 Q +NYD DL + LI AS TG EG + V+HRVI DHLR+ SFLIADG++P+NEGR Sbjct: 244 QGVHDNYDTDLMRALILASADATGAPPEGAHAVSHRVIADHLRACSFLIADGVMPSNEGR 303 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRAM +A +LG +P+M L+PAL EMG Y EL +A+ LI ETLR E+ + Sbjct: 304 GYVLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGGHYTELQRAQPLITETLRLEETK 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TLDRGL LLD L + L+G VAF LYDT+G PLD+ QD+L G+D+ Sbjct: 364 FKQTLDRGLRLLDEEEGRLAPGQALSGQVAFTLYDTYGFPLDLTQDVLR-GRQRGVDVDG 422 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN A+EEQR +ARA G G TE++WF LK++ GAT+F+GYD Sbjct: 423 FNAAMEEQRRKARAAWAGSGEAATERVWFELKDEVGATEFLGYD---------------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T + V A++ G ++ A +GQ+V VV +QTPFY E+GGQ+GD+G Sbjct: 467 -------TEMAEAKVTALLDPAGTRLDRAAAGQEVIVVVNQTPFYGESGGQVGDSGVLFS 519 Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G + + D QKK ++ H V RG + + L +D R + NHSATHLLH Sbjct: 520 AGGAEVAVRDTQKKLGAVWAHIGAVTRGTIAVGDVVELRVDGARRADIRANHSATHLLHE 579 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS + P+ LRFD++ P+++ +++ +E VN I N V TR+M+ Sbjct: 580 ALRRRLGEHVTQKGSLVAPERLRFDISQPTPLSAEDVQVVEAEVNRRILGNSEVTTRLMS 639 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVS 712 + AI GA AL G KY + VRVVS+ D G S LCGGTHV TG+I L IVS Sbjct: 640 PDAAIELGAMALFGEKYGEEVRVVSMGGVDAGGNKEFSVELCGGTHVRRTGDIGLFKIVS 699 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E ++ AG+RRIEA+TG+ A S+L Q+ +L AS LKV V +V + EE R+L+ Sbjct: 700 EGAVAAGVRRIEAMTGRGALSYLDEQEGRLIQAASALKVPPAEVPAKVAALVEERRRLEK 759 Query: 773 IHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A + Q+ + ++ V ++ ++ ++ +K+LK + D L+K++ SG+ Sbjct: 760 ELADLRRQVALGGGGAGPAAAAAVKEVGGVKLLARVLPDLPAKDLKPLADDLKKQVGSGV 819 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + + K S+++ VTEDL R +AVDL R + +GG GGGGRP MAQ+GGP+ Sbjct: 820 VVAIS-QADGKGSIVVGVTEDLAGRLSAVDLVRAGSAAMGGKGGGGRPDMAQAGGPD 875 >gi|300692180|ref|YP_003753175.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07] gi|299079240|emb|CBJ51912.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07] Length = 880 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 381/917 (41%), Positives = 541/917 (58%), Gaps = 59/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 61 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GLS ++++RI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWATVYHNDDEAYDIWTKVIGLSPERVVRIGDNKGAPYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGM 228 IF+D G + GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGM Sbjct: 181 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A +LQ +NY+IDLF+ L+ A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALVGAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVEDLVTQMGEAYPELREARDRVV 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT+G PLD+ QD+ Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKATGGKMLDGELAFKLHDTYGFPLDLTQDVCR 418 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + SL T F GYD L Sbjct: 419 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMAAG------SLDYTGDKTTFHGYDQLLSE 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +S V A+ G V+E GQ VV D TPFYAE+GG Sbjct: 472 ----------------------TSRVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 509 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D QK +F HH + G+L+ ++ +D R + N Sbjct: 510 QVGDEGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 570 HSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 ++M +DA+ SGA AL G KY D VRV+++ S LCGGTHV+ TG+I Sbjct: 630 ASTGAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIGS------SKELCGGTHVARTGDIG 683 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRISEAAAALRAQPSELTQRIVQVQDQ 743 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K +L +A + ++ + D+K L+ MD L+ K++ Sbjct: 744 VKSLEKELERLKSKLASAQGDELAEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861 Query: 882 GNKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 862 PDKLPQALAGVTAWVQQ 878 >gi|332140622|ref|YP_004426360.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550644|gb|AEA97362.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] Length = 865 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 380/901 (42%), Positives = 534/901 (59%), Gaps = 48/901 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R F+ +F+ +GH+ + SSSL+P +DPTL+FTN+GM FK+ F G EK Y Sbjct: 4 STADLRNKFINYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDTFLGTEKRSYTRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+ LT E L + Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEAIEFAWNFLTSEVGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY ED+EAF +W+ G+ +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183 Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG P E+G+R+IEIWNLVFMQF +Q LPK SIDTGMGLER++ +LQ Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF++LI+++ + G + + RVI DH+RS SFLI DG++P+NEGRGYVL Sbjct: 244 SNYEIDLFQNLIKSAASIVGTED--LENKSLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG + L+ +L EMG AYPEL+ +IE+ LR E+E+F KT Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLANEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG+ +L+ L+ L + + GDV FKLYDT+G P D+ D+ L ID F A Sbjct: 362 LARGMAMLNDTLASLE-GDTVPGDVVFKLYDTYGFPTDLTNDVAREHELK-IDEEGFEAA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ + + + S T F GY + G Sbjct: 420 MQ------AQRARAQQASNFGADYNSKLAIDHTTSFTGYTDVEG---------------- 457 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + V ++ VE+ GQ+ VV D TPFYAE+GGQ GD G Sbjct: 458 -------QANVVELIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +TD QK H + +G + + ID NR + NHSATHLLH AL IL Sbjct: 511 IVTDTQKMGNAF--AHKGIAKGSVSKGDTATAAIDSANREAIKKNHSATHLLHAALREIL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + +RFD +H + +T+ +L IE VN I N + T +M+ E+A A Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTTEQLAEIERRVNQEIRANHSLATELMDLEEAKA 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY+++VRVV++ G S LCGGTHV+ TG+I L I SE+ I +G+R Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVARTGDIGLFKITSEAGIASGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG++A + Q L SL+S LK NV+ RV + + ++L+ K +L Sbjct: 684 RIEAVTGEQAIEVVQTQQATLSSLSSLLKTDSQNVLERVVSLQNQTKELEKALNSAKQKL 743 Query: 782 NVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + + +I V + + V++K L+S+MD ++ +I GI++L G++ K Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANNAKV 802 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +++ VT++L D+ A +L A + GG GGGRP MAQ+GG QA+ V +L Sbjct: 803 NLIAGVTKNLTDKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDKPENLGQALDSVNVWL 861 Query: 897 K 897 + Sbjct: 862 Q 862 >gi|320539040|ref|ZP_08038714.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson] gi|320030880|gb|EFW12885.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson] Length = 875 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 381/910 (41%), Positives = 552/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAISYAWELLTGEDWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++T+Y+ D+EAF +W+K G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTIYETDDEAFDIWQKHIGVPAERIIRIGYNKGAAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGAMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ NY+IDLF+ LI +VTG + + RVI DH+R+ +FL++DG+ Sbjct: 243 RIAAVLQHVNANYEIDLFRTLISVVAKVTGATD--LDNKSLRVIADHIRACAFLVSDGVS 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L Sbjct: 301 PSNESRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVVPLIEVMGSAADELKRQQSRVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L E L+G++AF+LYDT G P+D+ D+ RGL Sbjct: 361 KTEEEQFARTLERGLALLDDELNKLQ-GETLDGEIAFRLYDTFGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + ++ G+++F GYD Sbjct: 420 -VDEAGFQQAMEAQRRRARESSGFC------ADYNTMIRVDGSSRFSGYDYEEQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++V A+ + G+ VE+ +G++ VV D TPFY E+GGQ+GD Sbjct: 467 -----------------QAMVIALFRDGQPVEQINAGEEAVVVLDGTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++D QK H + +G L+ + + ID + R ++ +NHSATH Sbjct: 510 GVLKAARADFVVSDTQKYG-QATGHLGKLSQGSLKVKDRVDAQIDTERRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN + +NL V T Sbjct: 569 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHYEAMKPEQIRRVEDLVNQQVRRNLLVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L IV Sbjct: 629 EVMSLDDAKEKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHTSRTGDIGLFSIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AG+RRIEA+TG+ A + L Q + L+ +A +K N+ ++ + R L+ Sbjct: 684 TESGTAAGVRRIEAVTGEGAIAKLHQQSDLLQVVAHLVKGDSSNLADKLHATLDRTRLLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + + V + + V++K L+ ++D L+ ++ S II+ Sbjct: 744 KELQQLKDQQAAQESASLSSQAKVVNGVKLLVSQLDNVEAKMLRIMVDDLKNQLGSAIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT+DL DR A +L A+ + G GGGRP MAQ+GG + + Sbjct: 804 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQVA-GKGGGRPDMAQAGGTDVSALP 861 Query: 887 QAIAGVASFL 896 A+ V +++ Sbjct: 862 AALNSVEAWV 871 >gi|167645359|ref|YP_001683022.1| alanyl-tRNA synthetase [Caulobacter sp. K31] gi|205830018|sp|B0SZN4|SYA_CAUSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167347789|gb|ABZ70524.1| alanyl-tRNA synthetase [Caulobacter sp. K31] Length = 883 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 446/907 (49%), Positives = 587/907 (64%), Gaps = 37/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P + Sbjct: 1 MPSLNEIRSTFLNYFGAADHAIVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPPHPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT++F L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTRDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D EA LWKKI+GLS D+IIRI TNDNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDTEAADLWKKIAGLSDDRIIRIATNDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R+IEIWNLVFMQFEQ ER LPK SIDTGMGLER+A V+Q Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQMAGGERVSLPKPSIDTGMGLERIAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI AS ++TG++ EG +HRVI DHLRSSSFL+ADG+ P+NEGRGY Sbjct: 241 VHDNYDIDLFKALIAASVELTGVRAEGAQAPSHRVIADHLRSSSFLLADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L P L +MG AYPEL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMHRLAPTLVAQMGQAYPELRRAEASIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LLD + L +L+G+ AFKLYDT+G PLD+ QD + ARG+ +D F+ Sbjct: 361 VTLGRGMGLLDEATAGLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRARGIT-VDTDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ ARA+ G G WF +KE+ G T F+GYD Sbjct: 420 VAMDRQRTMARANWAGSGQTGAAAAWFGIKEQSGPTNFVGYDTTE--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + VKAIV G VE A +G V+V+ D+T FYAE+GGQ GDTG G+ Sbjct: 465 --------TTGTVKAIVLDGAPVEAAQAGASVDVLLDRTSFYAESGGQAGDTGVIEAHGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD QK+A ++VH G L+ S+V ++D R NHSA HL+H AL Sbjct: 517 ESRVTDTQKQAGDLYVHRV-ELAGPLKVGDSVVASVDAARRTTTRANHSAAHLVHAALHH 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + D +RFD +H P+T+ E++ IE VN +I QN+P T+ M ++A Sbjct: 576 VLGPHVAQKGQMVDGDRMRFDFSHGGPLTADEIERIEAEVNAVIRQNVPAQTKEMAPQEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ E G +S LCGGTHV+ TG+I L IVSE + Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGESLTETGKAYSVELCGGTHVARTGDIALFKIVSEQGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+TG+ AR L+ Q K+LA K V+ RV+ + E + L+ A+ Sbjct: 696 ASGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVLARVDALVAERKALERQLAE 755 Query: 777 RKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829 K QL + S +A ++ ++ V KEL+ V + +K++ + G++ LVG Sbjct: 756 AKKQLALGGGSGGAASGPEDVAGTALIARVLDGVGGKELRGVAEEFKKQLTNGGVVALVG 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + KA+V + VT DL +F+A DLA+ + +GG G GG+ AQ G P+ KA + Sbjct: 816 VT-DGKAAVTVAVTADLTAKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDATKAQAGL 874 Query: 890 AGVASFL 896 + + L Sbjct: 875 DAIKAAL 881 >gi|242238445|ref|YP_002986626.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703] gi|242130502|gb|ACS84804.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703] Length = 875 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 548/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAILNAWELLTGPQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W + G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANVVGIPQERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+ID+F+ LI + +V G + N + RVI DH+RS +FLIADG++ Sbjct: 243 RVSAVLQHVNSNYEIDVFRTLIAEAAKVVGTRD--LNNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + ++E L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIDVMGSAADELRTQQTVVELAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +SE+E+F +TL+RGL LLD + L + L+G+ AF+LYDT+G PLD+ D+ RGL Sbjct: 361 KSEEEQFARTLERGLSLLDEEIRTLQ-GDTLSGEAAFRLYDTYGFPLDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR + SL AT F GYD Sbjct: 420 -VDETGFEREMEAQRQRAREA------SGFGADYNSLIRVDSATTFCGYDHAEQR----- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ ++GE V+E +G + V+ D+TPFY E+GGQ+GD Sbjct: 468 ------------------SHVVALYRKGEPVQEISAGDEAVVILDETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK F H + +G LR ++ +D R ++ +NHSATH Sbjct: 510 GVLKGVSAYFVVDDTQKYGR-AFGHVGKLTQGSLRVNDAVDAVVDDVRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS + LRFD +H + + E++ +ED VN + +NLPV T Sbjct: 569 LLHAALRQVLGTHVAQKGSLVNDRYLRFDFSHPEAMKPDEIRQVEDIVNAQVRRNLPVDT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM +DA A GA AL G KY+D+VRV+++ G S LCGG H TG+I L IV Sbjct: 629 AIMAIDDARAKGAMALFGEKYDDQVRVLTM-----GDFSIELCGGIHARRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEA+TG+ A + L Q + L+ + +K N++ +V + E R L+ Sbjct: 684 SESGTAAGIRRIEAVTGEGAVASLHHQSDLLQDVTLLVKGDANNLIEKVRSLLERNRGLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S I V + +S V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELLQLKEQQAAQESSSLAGKAKDINGVKLLVTQLSNVEPKMLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L E K S++ VT+ L +R A +L A + GG GGGRP +AQ+GG + + Sbjct: 804 L-STIVEGKVSLIAGVTQGLTERVKAGELVGFVANQV-GGKGGGRPDLAQAGGSDADALP 861 Query: 887 QAIAGVASFL 896 A+A V +++ Sbjct: 862 SALASVEAWV 871 >gi|88706721|ref|ZP_01104423.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71] gi|88699042|gb|EAQ96159.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71] Length = 867 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 377/903 (41%), Positives = 535/903 (59%), Gaps = 46/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL F+ +GH+ +PSSSL+P +DPTL+FTN+GM FK++F G E Y Sbjct: 1 MKTGEIREAFLAHFESHGHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAETRSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT E L Sbjct: 61 VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRFAWDFLTVELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++TV+ D+EA K+W + G A++I R+ DNFW M +TGPCGP SE+F+D GE Sbjct: 121 REKLWVTVHITDDEAEKIWIEDIGFPAERISRL-DEDNFWQMGDTGPCGPSSEVFYDHGE 179 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS ++ +RYIEIWNLVFMQ+ + E LPK S+DTGMGLER+A +LQ Sbjct: 180 DVPGGPPGSPDDDLDRYIEIWNLVFMQYNRSADGEMAPLPKPSVDTGMGLERIAAILQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLF+ LIQ++ ++ G + RVI DH+RSS+FLI DG+LP NEGR YV Sbjct: 240 HSNYDIDLFQALIQSAAEMVGTDD--LKASSLRVIADHIRSSAFLIIDGVLPGNEGRSYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRA+ + LG L+P+L EMG YPEL + + IE+ +R E+E+F + Sbjct: 298 LRRIMRRAIRHGNKLGADALFFHKLVPSLVAEMGDFYPELREQQTRIEDVIRGEEEQFAR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++G+V+L+ L+ + ++ GDV FKLYDT G P+D+ DI R + +D+ + Sbjct: 358 TLEQGMVILNEALAEMS-GTVIPGDVVFKLYDTFGFPVDLTNDIARERDFS-LDMEGYEA 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A++ QR R++ G + G T F GYD Sbjct: 416 AMQAQRERSKEG------GAFAVDYNRTLTLDGETLFTGYDE------------------ 451 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + S V A+++ GE V +G V+ D+TPFY E+GGQ GD+G +G+R Sbjct: 452 -----STGSGTVVALLRDGEEVNALTAGDNGIVILDRTPFYGESGGQAGDSGYLRSNGLR 506 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 L+I+D KA G +HH V G + ++ ID R++ +NHSATHLLH AL Sbjct: 507 LEISDT-TKARGHHLHHGKVLEGSIALGDTVECEIDNAIRQKTRLNHSATHLLHAALRYE 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + LRFD ++ + +T +L+++ED+VN I N+ V T+IM+ ++A Sbjct: 566 LGDHVAQKGSLVDGQRLRFDFSNPEAMTPEQLRAVEDSVNAQIRANVEVTTQIMSMDEAR 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY D VRV+++ S LCGGTHV TG+I + I+SE + +G+ Sbjct: 626 EAGAMALFGEKYGDEVRVLTMGE---NGFSVELCGGTHVERTGDIGMFRILSEGGLASGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A + D L + L+ + NV +V + + R L+ A+ K + Sbjct: 683 RRIEAVTGEHALREMRTVDHALGEVCELLRATTDNVRDKVAALRSQNRDLEKELARLKQK 742 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S + V ++ + D L+ +MD + K+ SG+I+L + + K Sbjct: 743 LASSAGSDITASAIDVDGVKVLAAAVDGADPGALRGIMDQCKNKLGSGVILLAAV-NDDK 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ VT+DL +R A DL R A LGG G GGRP MAQ GG A+ V ++ Sbjct: 802 VALVAGVTKDLTERVRAGDLMREFAGRLGGKG-GGRPDMAQGGGTEPALLPAALEAVPAW 860 Query: 896 LKK 898 + + Sbjct: 861 VAE 863 >gi|149190613|ref|ZP_01868882.1| alanyl-tRNA synthetase [Vibrio shilonii AK1] gi|148835611|gb|EDL52579.1| alanyl-tRNA synthetase [Vibrio shilonii AK1] Length = 861 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 380/906 (41%), Positives = 537/906 (59%), Gaps = 58/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P +DPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHDDPTLLFTNAGMNQFKDCFLGLEKRNYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTETLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF++W K G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFEIWNKQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHVDGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G Y+ + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVIG--YQDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L + MGSA EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGTLASVMGSAGEELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L L +LG +++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMTILTEALDNLGDEKVLDGETVFKLYDTYGFPADLTNDVAREREFT- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E QR RAR G + + + T+F GY G Sbjct: 420 IDEEGFEKAMEAQRQRAREA------GQFGTDYNAAIKVDTDTEFCGYTGTEG------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 SS V A+ +G V+ +G K VV +QTPFYAE+GGQ GD G Sbjct: 467 ----------------SSSVAAMFVEGAEVDALSAGDKAIVVLEQTPFYAESGGQCGDAG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK HH + G+L + +D Q R +S+NHSATHL Sbjct: 511 VLKTAAGLFKVEDTQKLGN-AIAHHGELVEGVLAKGDEVDAIVDAQRRAAISLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD +H + +T AE+K +E VN I N + T Sbjct: 570 LHAALRQVLGEHVTQKGSLVKPDNLRFDFSHLEAMTKAEIKEVERLVNAQIRTNHVIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 630 VMDIESAKAKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q + + + + + + +E ++L+ Sbjct: 685 EGGIAAGIRRIEAVTGEAALDAIEAQASQYEE-------KLTDAASKAKSLEKEIQQLKD 737 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A + + +IA + + DSK L+++MD + ++ SGI + ++ Sbjct: 738 KLAAVESANIMG--KVEEIAGTQVLVAALEGADSKNLRTMMDNAKNQMGSGIAFIANVA- 794 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K ++ VT+DL + A DL ++ A+ + GG GGGRP MAQ+GG + +A+ + Sbjct: 795 DGKIGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVEALPEALKSI 853 Query: 893 ASFLKK 898 S+L++ Sbjct: 854 RSWLEE 859 >gi|17545516|ref|NP_518918.1| alanyl-tRNA synthetase [Ralstonia solanacearum GMI1000] gi|20532248|sp|Q8Y193|SYA_RALSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|17427809|emb|CAD14499.1| probable alanyl-trna synthetase (alanine--trna ligase) (alars) protein [Ralstonia solanacearum GMI1000] Length = 884 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 380/921 (41%), Positives = 537/921 (58%), Gaps = 63/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 61 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGM 228 IF+D G I GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGM Sbjct: 181 IFYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ L+ A+ + T K NN + RVI DH+R+ +FLI D Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALVSAAARETNTKDLANN--SLRVIADHIRACAFLIVD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVKEMGEAYPELREARDRVV 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLPLDIMQ 402 + LR+E+ RF +T++ G+ +LDG L L K +L+G++AFKL+DT+G PLD+ Q Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKAAGKDEKQRMLDGELAFKLHDTYGFPLDLTQ 418 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 D+ +D +F+ A+ QR +ARA + T L T F GYD Sbjct: 419 DVCRE-NDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYDQ 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L +S V A+ G V E GQ VV D TPFYA Sbjct: 472 LLSE----------------------TSRVTALFVDGASVPEMRPGQTGVVVLDHTPFYA 509 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GD G + + D QK +F H + G+L+ ++ +D R + Sbjct: 510 ESGGQVGDQGTLKAATVWFDVADTQKVLPEVFGHQGTLRTGVLKVGDAVGAEVDAVRRAR 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHSATHL+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +E VN Sbjct: 570 TMRNHSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNTPMTPLQIREVEARVNAE 629 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I N ++M +DA+ SGA AL G KY D VRV+++ S LCGGTHV+ T Sbjct: 630 ILANASTNAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIGS------SKELCGGTHVART 683 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ + Sbjct: 684 GDIGLFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRIGEAAAALRAQPSELTQRIVQ 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + ++ + L+ + K +L +A + ++ + D+K L+ MD L+ Sbjct: 744 VQDQVKSLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLK 803 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+++ I+L +S + K +++ VT D R A +L A+ + GG GGGRP MAQ+ Sbjct: 804 DKLKTAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQA 861 Query: 878 GGPNGNKADQAIAGVASFLKK 898 GG +K QA+AGV +++++ Sbjct: 862 GGTEPDKLPQALAGVTAWVQQ 882 >gi|56460839|ref|YP_156120.1| alanyl-tRNA synthetase [Idiomarina loihiensis L2TR] gi|81599943|sp|Q5QUV7|SYA_IDILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56179849|gb|AAV82571.1| Alanyl-tRNA synthetase [Idiomarina loihiensis L2TR] Length = 865 Score = 901 bits (2328), Expect = 0.0, Method: Composition-based stats. Identities = 377/903 (41%), Positives = 549/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + IR FL +F + GHE +PS+S+IP NDPTL+FTN+GMVPFK++F G +K Y Sbjct: 3 MNSAQIRDAFLNYFAERGHEKVPSASMIPGNDPTLLFTNAGMVPFKDVFLGTDKRRYDKA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+C+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK++AIQ AWD LTKE L Sbjct: 63 TSAQRCLRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKQAIQYAWDFLTKELKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L++TV+ ED+EA+ +W K G+ D+I RI DNFWSM +TGPCGPCSE+F+D GE Sbjct: 123 AEKLWVTVFTEDDEAYDIWVKDIGVPEDRISRIGEKDNFWSMGDTGPCGPCSEVFYDHGE 182 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG P E+G+RYIEIWNLVFMQ+ +Q LP SIDTGMGLER++ ++Q Sbjct: 183 EVWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTLEPLPDPSIDTGMGLERISAIMQNV 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+A+ ++ G + + RVI DH+RS SFLI DG++P+NEGRGYV Sbjct: 243 HSNYEIDLFQALIKAAAEIIGTND--LDNKSLRVIADHIRSCSFLITDGVMPSNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG + L+ L +MG AYPEL Q K +I++ L E+++F + Sbjct: 301 LRRIIRRAVRHGHLLGAKDTFFFRLVDELARQMGEAYPELEQKKQIIKDALEREEQQFAR 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL +L + L ++ GDV FKLYDT+G P+D+ DI + L ID F Q Sbjct: 361 TLERGLAILSDEIGELK-GNVIPGDVVFKLYDTYGFPVDLTADIAREQELT-IDEQGFEQ 418 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ + + + + T F GYD + G Sbjct: 419 AM------SEQRQRAQQASQFGMDYNQQLKSDNKTAFTGYDDVVG--------------- 457 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + V + + G+ VE+ +G+ VV +TPFYAE+GGQ+GD G + +G Sbjct: 458 --------QAKVVELFKDGKPVEQLQAGENGIVVLSETPFYAESGGQIGDKGVLVANGPA 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++TD Q + I H V + ++ S+ ID + R + NHSATHLLH AL + Sbjct: 510 FEVTDTQYIGKAI--AHHGVAKAAVKLSDSVKAEIDSERRENIKRNHSATHLLHAALRNL 567 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + D +RFD +H +P+T+ +L +E VN + NLP+ T++M ++A Sbjct: 568 LGEHVTQKGSLVEADKMRFDFSHFEPVTTEQLAQLEREVNAQVRANLPLQTQLMAIDEAK 627 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY+++VRVV + G S LCGGTHV +TG+I L I SE I +G+ Sbjct: 628 EAGAMALFGEKYDEQVRVVRM-----GDFSMELCGGTHVKATGDIGLFRITSEGGIASGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIE +TG+ A + Q L+ +A LK +V +V+++ ++R+L+ + + + + Sbjct: 683 RRIEVVTGEAAVRYTQQQQSVLQQIAGELKTEPSSVAEKVQQLQHKFRELERKNEQLQQK 742 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + I V + + + D K L+ ++D L+ ++ SGI++L G + K Sbjct: 743 LAQQAGGGLIAQAVDINGVKAIIAELDQADPKSLRGLVDDLKNQMGSGIVLL-GTANGDK 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT DL + A D+ +A V+ GG GGGRP MAQ+GG + ++A+A ++ Sbjct: 802 VSLIAGVTTDLTSKVKAGDIVNQAANVV-GGKGGGRPDMAQAGGSLPEQLNEALATATTW 860 Query: 896 LKK 898 L++ Sbjct: 861 LQQ 863 >gi|113969471|ref|YP_733264.1| alanyl-tRNA synthetase [Shewanella sp. MR-4] gi|123130634|sp|Q0HL60|SYA_SHESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113884155|gb|ABI38207.1| alanyl-tRNA synthetase [Shewanella sp. MR-4] Length = 874 Score = 901 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 379/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + GI ++D QK + + G L L +D + R + +NHS THLLH Sbjct: 511 VAQGIEFAVSDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744 Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K +L + + VN + + V++ L+ + D L++K++S +I+L G Sbjct: 745 QQLKDKLAAAASADLACDAVVVNGVNVLIKKLDGVEAGALRGLQDELKQKLKSAVILL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 + V ++ + Sbjct: 863 SQVLPWITE 871 >gi|312115730|ref|YP_004013326.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311220859|gb|ADP72227.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 894 Score = 901 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 454/911 (49%), Positives = 616/911 (67%), Gaps = 39/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS ++ IR TF++FF+KNGHE +PSS L+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MSTLNEIRGTFIDFFRKNGHEHVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGMETLPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKE+ L Sbjct: 61 AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLVTKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D++RL +TV+ ED++A LWKKI+GL D+IIRI T+DNFWSM ETGPCGPCSEIFFD G Sbjct: 121 DKKRLLVTVFSEDDDAHALWKKIAGLPDDRIIRIPTSDNFWSMGETGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS +G+R+IEIWNLVFMQ+EQ +K ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 PKVPGGPPGSEDADGDRFIEIWNLVFMQYEQVSKTERLDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD DLF+ LI+AS TG+ EG + +HRVI DHLR+S+FLIADG+LP+NEGRGY Sbjct: 241 VHNNYDTDLFQALIRASVDATGVPAEGAALPSHRVIADHLRASAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM ++ LLG EPL+ LLP L EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHSHLLGAEEPLLYRLLPVLVREMGQAYPELVRGQALIGETLKIEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD LG + +GDVAFKLYDT+G PLD+ QD L AR +DI FN Sbjct: 361 RTLARGLSLLDDASGSLGAGDTFSGDVAFKLYDTYGFPLDLTQDALKARS-ISVDIKQFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ AR G G T+K+WF + ++ GAT+F+GY+ Sbjct: 420 AAMAQQKAEARKAWAGSGEAATDKVWFDVLDQAGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538 T + AIV+ G+ V++ +G++ ++ +QTPFY E+GGQ+GD G I Sbjct: 462 -----TEAAEGQIVAIVKDGKPVKQLKTGEEGILILNQTPFYGESGGQVGDRGVIIAPKS 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ QKK +F H V++G L+ ++ + +D+ R + NHSATHLLH AL Sbjct: 517 AHFDVSETQKKLGKLFAHVGTVKKGPLKVGDAVEMQVDHARRTAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + PD LRFD +H KP++ EL ++E+ N ++ ++ PVVTR+M +D Sbjct: 577 ETLGTHVTQKGSLVDPDKLRFDFSHPKPLSKEELAAVEELANAVVLRDSPVVTRLMAVDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSE 713 A+A+GA AL G KY + VRVVS+ + S LCGGTHV +TGEI L+ +V E Sbjct: 637 AVAAGAMALFGEKYGEEVRVVSMGEANHDERGSRAFSVELCGGTHVRATGEIGLVKVVQE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +++ AG+RRIEA+T AR HL Q+ L+ A L+V+ V R++ + +E +KL+ Sbjct: 697 TAVAAGVRRIEALTANAARLHLSHQEAALRQAAELLRVAPSEVPARLQNLIDERKKLERE 756 Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A K ++ + + ++ DV + + + K+L+S++D +++I SGI+ Sbjct: 757 LADAKKKIALGTGGDQAGAENPVRQVGDVTMFARTVQGIQPKDLRSLVDDGKRQIGSGIV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +VG++ + KA +++ VT DL ++AVDL + A +GG GGGGRP +AQ+GGPNG A Sbjct: 817 AIVGVTDDGKAGIVVGVTGDLTKHYSAVDLVKAGAAAVGGQGGGGRPDLAQAGGPNGANA 876 Query: 886 DQAIAGVASFL 896 + A+ +A L Sbjct: 877 EAALNAIAECL 887 >gi|28899322|ref|NP_798927.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|153839216|ref|ZP_01991883.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] gi|260878987|ref|ZP_05891342.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|260895460|ref|ZP_05903956.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|260903524|ref|ZP_05911919.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037] gi|31076994|sp|Q87LR3|SYA_VIBPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28807546|dbj|BAC60811.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|149747281|gb|EDM58267.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] gi|308088224|gb|EFO37919.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|308090433|gb|EFO40128.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|308108704|gb|EFO46244.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037] gi|328474145|gb|EGF44950.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329] Length = 860 Score = 901 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 377/911 (41%), Positives = 538/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGY------------ 460 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 461 -----------VGTKGSSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 EIRTEAGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG+ A + Q K + ++ E ++ + L+ Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQAAKYEE--------------KLAESAQKAKTLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + ++ + + DSK L++++D ++ ++ SG+++L Sbjct: 730 ELQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + + Sbjct: 790 ANVT-DDKVGLIAGVTKDLVGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPE 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIKTVQPWLEE 858 >gi|323137975|ref|ZP_08073049.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242] gi|322396694|gb|EFX99221.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242] Length = 889 Score = 901 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 451/908 (49%), Positives = 602/908 (66%), Gaps = 35/908 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 1 MSGVNQIRSAFLDYFVRNGHEKVASSPLVPHNDPTLMFTNAGMVQFKNVFTGVEKRHQAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L Sbjct: 61 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEGAIELAWGLITKEFSL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +D+EAF LWKKI+G +IIRI ++DNFWSM +TGPCGPCSEIF+DQG Sbjct: 121 PVEKLLVTVYHDDDEAFDLWKKIAGFHDSRIIRIASSDNFWSMGDTGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQ+EQ +R LP+ SIDTGMGLER+A ++Q Sbjct: 181 ETLTGGPPGSPGEDGDRFLEFWNLVFMQYEQVAPGQRAPLPRPSIDTGMGLERIAALMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NY+IDLF+ L A + TG G +HRVI DHLR+SSFL+ADG+ P+NEGRGY Sbjct: 241 VTSNYEIDLFRSLTGAVAEYTGAPVGGPQGASHRVIADHLRASSFLVADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A++LG EPLM L+P L EMG AYPEL++A+ LI +TL++E+ RF Sbjct: 301 VLRRIMRRAMRHAQILGAQEPLMWRLVPTLVAEMGQAYPELVRAQALIVDTLKTEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +LD ++LG+ + L+G+ AFKLYDT+G PLD+ +D L RG G+D +FN Sbjct: 361 ATLARGLAILDDETANLGRGDKLSGETAFKLYDTYGFPLDLTEDALRPRG-VGVDKEAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF+LKE+ G T+F+GY+ Sbjct: 420 AAMERQRAEARKAWAGSGETATETLWFALKERLGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V AIV G G + V+ +QTPFY E+GGQ+GD G G + Sbjct: 462 -----TEKSEGVVSAIVHDGAEAFVLKQGARGAVILNQTPFYGESGGQVGDVGVMRGRNV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ + QKK + VH +VE G + + L L +D++ RR NHSATH+LH AL Sbjct: 517 RFRVENTQKKLGDLIVHEGVVEEGEIVPGVVLELDVDHERRRATRANHSATHILHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD TH KP+T EL +E N+I+ N PV TR+M ++DA Sbjct: 577 VLGDHVAQKGSLVAPERLRFDFTHPKPLTEEELARVEALANEIVQDNAPVDTRLMAQDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716 I SGA AL G KY D VRVVS+ D GV S LCGGTHVS TG+I L+ IV E ++ Sbjct: 637 IRSGARALFGEKYGDEVRVVSMGRPDPGVAHPFSVELCGGTHVSRTGDIGLISIVGEGAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA T + ARS L+ Q L+ +AS ++ R+ ++ EE ++L+ A Sbjct: 697 ASGVRRIEARTAEGARSQLVAQSRALREIASLIRAPMEEAPARLGQLLEERKRLERDLAD 756 Query: 777 RKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +L + S +A V ++ + VD+K+LKS++D +K I SG++ Sbjct: 757 ARRKLAMGGGSGNGGGQEWRDVAGVKLLTRAVDGVDAKDLKSLVDDAKKNIGSGVVAFAC 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + KA +++ VT+DL +F+AV+ R+++ LGG GGGGRP +AQ+GGPN +QA+ Sbjct: 817 ASPDGKAGIVVGVTDDLTSKFSAVEFVRVASATLGGKGGGGRPDLAQAGGPNAAAIEQAL 876 Query: 890 AGVASFLK 897 A V L+ Sbjct: 877 ASVEDALR 884 >gi|328954420|ref|YP_004371754.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] gi|328454744|gb|AEB10573.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] Length = 878 Score = 900 bits (2326), Expect = 0.0, Method: Composition-based stats. Identities = 375/908 (41%), Positives = 533/908 (58%), Gaps = 43/908 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL +F+ H + SSSL+P +DPTL+FTN+GMV FK +F G+E+ Y Sbjct: 1 MTGKEIREKFLAYFESKRHVRVASSSLVPAHDPTLLFTNAGMVQFKRLFLGEEQRGYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK AI++AW+LLT+ + L Sbjct: 61 ASAQKCVRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKAGAIEMAWELLTEHYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TVY +D+EA LW + L ++I+R+ DNFW+M +TGPCGPCSEI DQGE Sbjct: 121 TERLWATVYHDDDEAADLWHDVIHLPRERIVRLGEKDNFWAMGDTGPCGPCSEIIIDQGE 180 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + +RY+EIWNLVFMQF + + LPK SIDTGMGLER+ V+Q Sbjct: 181 ERACGPDCGIGRCDCDRYLEIWNLVFMQFNRDEQGNLTPLPKPSIDTGMGLERLTAVIQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 N+D DL + +I +E++ G+ Y + V +VI DH R+ +FLI DG+LP+NEGR Sbjct: 241 VPTNFDTDLIRPVIARTEELAGIAYGQDPALDVAFKVIADHCRAITFLITDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG+ +P + + + MG YPEL+ A+ I++ + +E+ER Sbjct: 301 GYVLRRILRRAVRFGRLLGFKQPFLAPVGQKVIELMGGDYPELLDARSFIDQVVHNEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD GL +L L L L GD+AFKLYDT+G PLD++ D+L + +D+ Sbjct: 361 FAETLDHGLKILTDNLEDLKARGERRLPGDIAFKLYDTYGFPLDLITDVLQEQ-QLELDL 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ + QR +R G G ++ + + AT F+GYD Sbjct: 420 SGFNEHMSRQRESSRQSWKGGLPGELPPVY-QVLQDLEATVFVGYDQFE----------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + AI+Q+G V A +G+ VE+V + TPFYAE+GGQ+ DTG Sbjct: 468 ------------AESQILAIIQEGATVSGAKAGRSVEIVVETTPFYAESGGQVADTGTIR 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G + ITDVQ+ + +H +++G +R +VL ID RRQ++ +H+ATHLLH Sbjct: 516 GPDFLITITDVQRLPNDVVIHKGEIKQGEIRVGKKVVLAIDAGRRRQIACHHTATHLLHA 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV Q GS + PD RFD +H ++ A L +E ++ I QNLPV M Sbjct: 576 ALRHRLGDHVKQAGSLVAPDRFRFDYSHFTGLSDAVLAQLEVDLLHDIQQNLPVNVSYMP 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A+ +GA AL KY + VR+V+V S LCGG HV TG+I I+SESS Sbjct: 636 MSEALETGAMALFDEKYGNIVRLVAVPG-----VSLELCGGAHVDQTGDIGFCKIISESS 690 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G A +L + ++L ++ LK +G ++ R++++ + R+L+ Sbjct: 691 VAAGIRRIEAVCGAAALRYLQEESQELSAVGQRLKAGKGEILARLDKLLQRQRELEKEVE 750 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + QL + V ++ + D K L+ D L+ ++QSG+I+L Sbjct: 751 ALQGQLAAARSGDLLERVRHVDGVKVLALEVDVADPKGLRDFADKLKDRLQSGVIILGSG 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + KA ++ VVT+DL DR +A + A L GG GGGRP MAQ+GGP K + ++ Sbjct: 811 RGD-KAMLITVVTKDLTDRLHAGKIVGELAARL-GGKGGGRPDMAQAGGPAKEKLPEVLS 868 Query: 891 GVASFLKK 898 + K Sbjct: 869 EAYGVVAK 876 >gi|117919577|ref|YP_868769.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3] gi|205830207|sp|A0KU94|SYA_SHESA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117611909|gb|ABK47363.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3] Length = 874 Score = 900 bits (2326), Expect = 0.0, Method: Composition-based stats. Identities = 379/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------NAKVTALYLNGESVSAISAGDDAVVVLDVTPFYAESGGQVGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + GI ++D QK + + G L L +D + R + +NHS THLLH Sbjct: 511 VAQGIEFAVSDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744 Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K +L + + VN + + V++ L+ + D L++K++S +I+L G Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 + V ++ + Sbjct: 863 SQVLPWITE 871 >gi|258623803|ref|ZP_05718760.1| alanyl-tRNA synthetase [Vibrio mimicus VM603] gi|258583926|gb|EEW08718.1| alanyl-tRNA synthetase [Vibrio mimicus VM603] Length = 858 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 386/911 (42%), Positives = 539/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 61 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 121 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 180 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 181 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 240 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 241 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + L L+ L MG+A EL + + L+E+ LR Sbjct: 299 SNEGRGYVLRRIIRRAVRHGNKLSAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G D+ D+ RG + Sbjct: 359 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFLADLTNDVARERGFS- 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + +L + T+F GY RG Sbjct: 417 IDETGFEQAMEEQRQRAREA------GQFGTDYNALIKSATNTEFCGYTASRG------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 464 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 507 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K HH ++ +G+L + +D Q R +S+NHSATHL Sbjct: 508 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 566 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+ E+K +E VN I +N + T Sbjct: 567 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETN 626 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 627 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 681 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A ++ Q +V E+ + + L+ Sbjct: 682 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 727 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 728 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIML 787 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I+ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 788 GNIA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 845 Query: 888 AIAGVASFLKK 898 A+ V +++ + Sbjct: 846 ALESVDAWIAE 856 >gi|330966776|gb|EGH67036.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 874 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 384/893 (43%), Positives = 528/893 (59%), Gaps = 55/893 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P++EGRGYVLRRI+RRA + LG ++ AL TEMGSA+PEL+Q + IE L Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +++ L+ L ++ G++ FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++D K F+HH +V G L + + + + R +NHSATH Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 L + E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGG 853 >gi|205830055|sp|Q0VNK2|SYA_ALCBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 863 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 386/903 (42%), Positives = 534/903 (59%), Gaps = 46/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL++F GH + SSSL+P NDPTL+FTN+GM FK++F G+E Y Sbjct: 1 MKSAELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G Sbjct: 121 EERLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS++E +RYIEIWNLVFMQ+++Q E LPK S+DTGMGLER+A VLQ Sbjct: 180 DVPGGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ L+QA+ + TG + RVI DH+RS+SFLI DG++P+NEGRGYV Sbjct: 240 HSNYEIDLFQALLQAAAKATGCTD--LEEKSLRVIADHIRSASFLICDGVIPSNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG +P L+ AL EMG AYPEL + + IE+ L +E+E+FG+ Sbjct: 298 LRRIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL G+ +L+ + L +L GDV F LYDTHG P D+ D+ R L+ +D+ F Sbjct: 358 TLAAGMKVLESAIEQLD-GRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEA 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ QR RAR G+G+ + T F GY+ L Sbjct: 416 AMAAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKLADDN------------- 456 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V A+ + G V+ +G++ VV D+TPFYAE+GGQ+GDTG I D R Sbjct: 457 ----------TVVALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEAR 506 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +TD +K+ VH G L + +D R + NHSATHL+H AL + Sbjct: 507 FMVTDTRKRQA-AHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS ++ D LRFD +H + ++ A+ + IE VN I N V T +M+ E A Sbjct: 566 LGEHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAR 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY+D+VRV+S+ S LCGGTHV+ TG+I L I E+S AG+ Sbjct: 626 EAGAMALFGEKYDDQVRVLSMGS---DGFSKELCGGTHVNRTGDIGLFRITLEASAAAGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A + + Q+ L +A+ +K S N RV ++ R+L+ + K + Sbjct: 683 RRIEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQK 742 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L I V ++ I D K L+ MD L+ K+ S +I+L + E K Sbjct: 743 LASGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGE-K 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ VT+DL ++ A DL + A+ + G GGGRP MAQ GG N A+ V ++ Sbjct: 802 VALVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAW 860 Query: 896 LKK 898 + + Sbjct: 861 VAE 863 >gi|261820431|ref|YP_003258537.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163] gi|261604444|gb|ACX86930.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163] Length = 875 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 385/910 (42%), Positives = 538/910 (59%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC Sbjct: 123 LPKEKLWVTVYATDDEAYNIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG P E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLFK LI A + G + RVI DH+RS +FLIADG++ Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTD--LTNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIDVMGPAAAELKKQQSVVEQAL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F +TL+RGL LLD + +L + L+G+ F+LYDT+G P+D+ D+ RGL Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETVFRLYDTYGFPVDLTADVCRERGLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+ QR RAR + SL T F GY+ + Sbjct: 420 -VDEEGFESAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V++ +G V+ ++TPFY E+GGQ+GD Sbjct: 467 -----------------QAKVIALYHNGNAVDQIAAGDDAVVILNETPFYGESGGQVGDQ 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ + D QK + H + +G LR S+ +D Q R ++ +NHSATH Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRLVEDIVNAQIRRNLTVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH + TG+I L I+ Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHANRTGDIGLFQII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743 Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + ++ V + + VD K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 L-GTATEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDALALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 GALASVESWV 871 >gi|146307925|ref|YP_001188390.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp] gi|145576126|gb|ABP85658.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp] Length = 892 Score = 899 bits (2323), Expect = 0.0, Method: Composition-based stats. Identities = 401/912 (43%), Positives = 550/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 19 MKSAEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 78 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 79 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 138 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+++W K G+ A+++IRI N DNFW+M +TGPCGPC Sbjct: 139 LPKEKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPC 198 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 199 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 258 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ AS + G + +V+ DH+RS SFLIADG+ Sbjct: 259 RISAVLQHVNSNYEIDLFQNLLAASAKAIGCA--NEGQASLKVVADHIRSCSFLIADGVT 316 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 317 PSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVL 376 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ GD+ FKLYDT+G P+D+ DI R L+ Sbjct: 377 KTEEEQFAKTLEQGLKILEQDLAGLQ-GSVIPGDIVFKLYDTYGFPVDLTADIARERELS 435 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + +L + T+F+GY+ G Sbjct: 436 -VDEEGFEREMEAQRERARSASAFGM------DYNALVKVDADTRFLGYEGTSG------ 482 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + A+ + G V+ G++ VV DQTPFYAE+GGQ+GD Sbjct: 483 -----------------SGKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDC 525 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K F+HH +V +G L S+ + R+ ++NHSATH Sbjct: 526 GYLESAGMRFDVRDTTKAGG-AFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATH 584 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +LK +ED VN I +N V T Sbjct: 585 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVET 644 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I Sbjct: 645 EETDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 700 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +E+LK AS +K S+ NV+ ++ + E R+L+ Sbjct: 701 SEGGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLE 760 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + S + ++ + +D K L +++D L+ K+ SG+I+ Sbjct: 761 KELEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVIL 820 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G+ ++K ++ VT+DL + A DL R +A +GG G GGRP MAQ GG + K D Sbjct: 821 LGGVF-DEKVVLVAGVTQDLTAKLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGVDAGKLD 878 Query: 887 QAIAGVASFLKK 898 +A+A A+F+++ Sbjct: 879 EALALAATFVEQ 890 >gi|326561060|gb|EGE11425.1| alanyl-tRNA synthetase [Moraxella catarrhalis 7169] Length = 893 Score = 899 bits (2323), Expect = 0.0, Method: Composition-based stats. Identities = 369/922 (40%), Positives = 522/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + ++L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + +L + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKLASLHANSLTDNLKDIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|220925350|ref|YP_002500652.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060] gi|219949957|gb|ACL60349.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060] Length = 886 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 456/892 (51%), Positives = 608/892 (68%), Gaps = 35/892 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK +YQ Sbjct: 1 MSGVNEIRSTFLDYFAKHGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRLYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW+L+TKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY EDE+A LW+KI+G S D+IIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 DKDRLLVTVYAEDEDAATLWRKIAGFSDDRIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLER+A +LQ Sbjct: 181 PELWGGPPGSPDEDGDRFLEFWNLVFMQYEQIEPGNRVDLPRPSIDTGMGLERIAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A G EG ++RVI DHLR+SSFL+ADG+LP NEGRGY Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRAPEGPQTASYRVIADHLRASSFLVADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +P+M L+P L EMG AYPEL +A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELERAEALITETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L +RG G+D SF Sbjct: 361 RTLERGLSILDAETRDLSAGQKLSGETAFTLYDTYGFPLDLTQDALKSRG-IGVDTESFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G TE +WFSL+E+ GAT+F+GY+ Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWFSLRERVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +V A+V+ G VE +G++ +V QTPFY E+GGQ+GDTG G+ Sbjct: 462 -----AETAEGVVTALVKGGAEVEAIGAGEEGLLVVSQTPFYGESGGQVGDTGTVTAPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+++TD +KK +FVHH +VE G L T ++ L +D++ R + +HSATHLLH AL Sbjct: 517 RVRVTDTEKKLGDLFVHHVMVEEGRLATGQAIELQVDHERRAAIRAHHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD +H KP+ E+ ++ED N ++ QN PVVT++M +DA Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEDMANRVLLQNGPVVTKLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA+GA AL G KY D VRVVS+ E S LCGGTHV+ TGEI ++ +V ES Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEESSADGRPKAFSVELCGGTHVARTGEIGVITVVGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ +G+RRIEA+TG AR HL + +L ++A LKV R+ + E+ R+L+ Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAMAGLLKVPPAEAPERLAALIEDRRRLEREL 756 Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ + +L + S ++ V M+ + V+ ++LKS+ D +K++ SGI+ +VG Sbjct: 757 AEARRKLAMGGGSAGEDPVREVGGVKLMARAVQGVEMRDLKSLADEGKKRLGSGIVAIVG 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++++ KA +++ VT+DL DRF+AV L R ++ LGG GGGGR MAQ+GGP+ Sbjct: 817 VAQDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPD 868 >gi|296133407|ref|YP_003640654.1| alanyl-tRNA synthetase [Thermincola sp. JR] gi|296031985|gb|ADG82753.1| alanyl-tRNA synthetase [Thermincola potens JR] Length = 884 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 377/910 (41%), Positives = 555/910 (60%), Gaps = 44/910 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK +F G ++ Y+ Sbjct: 1 MTGNEIREKFLKFFENKGHTIIASSSLVPHDDPTLLFTNAGMNQFKEVFLGLDRRPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK AI AW LT+E L Sbjct: 61 TTSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWQFLTEELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +DEEA +LW++I+GL +++IR+ DNFWSM +TGPCGPCSE+ D+GE Sbjct: 121 KDRLYATVYRDDEEAAQLWQEIAGLPPERVIRLGEKDNFWSMGDTGPCGPCSEVLIDRGE 180 Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + + +R++EIWNLVFMQ+ + E LPK SIDTGMGLER+A+V+Q Sbjct: 181 EFKCAADNCAIGACDCDRWLEIWNLVFMQYNRDESGEMTPLPKPSIDTGMGLERIASVMQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGR 297 + +N+D DLFK ++ E+++G Y + RVI DH R+ +FLI+DG+LP+NEGR Sbjct: 241 KVNSNFDTDLFKPIMAKVEELSGSVYYQDERGFPFRVIADHARACTFLISDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + ++LG +P + ++ + MG AYPE+ + + +E+ ++ E+ER Sbjct: 301 GYVLRRILRRAVRFGKVLGIEKPFLYQMVGVVADLMGDAYPEIREKQTYVEQVIKIEEER 360 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL G+ L+ ++ + ++G AF LYDT+G PLD+ +DI GL +D Sbjct: 361 FHETLHEGMRLVSDIVEKVKAEGRQSISGQEAFLLYDTYGFPLDLTEDIAEEHGLT-VDK 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A+EEQR+RARA ++++ + +K GAT+F GY L Sbjct: 420 DGFAAAMEEQRTRARAARQDEAMLAGQELYAEVGQKLGATEFTGYSELETR--------- 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A++ E E +G++VEV+ D+T FY E+GGQ+GD G Sbjct: 471 --------------ANVVALIVDKEFRHEVRAGEQVEVIMDRTCFYGESGGQVGDRGILE 516 Query: 536 GDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +++TD +K G+ VH VE+ I+ + +D + R+Q++ NHS THLLH Sbjct: 517 SNRGAVIKVTDTKKTFNGLMVHLGTVEKDIVSFGDVMDARVDARRRKQIARNHSVTHLLH 576 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS + P+ LRFD TH + +T EL+ +ED VN++I NL V Sbjct: 577 KALKEVLGDHVNQAGSLVEPERLRFDFTHFRAVTPEELQKVEDRVNEMILANLDVHAFET 636 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + ++A A GA AL G KY ++VRVV + G +S LCGGTH+ STGE L I+SES Sbjct: 637 SLDEAKALGATALFGEKYGEKVRVVKM-----GDYSMELCGGTHLRSTGEAGLFKILSES 691 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG+ ++ Q+ +LK +A +K S VV RVE I + R+ + Sbjct: 692 GIGAGLRRIEAVTGEGTLRYIAEQEARLKDIARLVKSSPAEVVKRVENIVDNLREKEKEL 751 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + +L E+ ++A ++ D L+ + D L+ K+ SGI++L Sbjct: 752 EQLQARLAREESQNLMDKVKEVAGAKVLAVPTGAPDMDALRHMGDMLRDKLGSGIVVLGA 811 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + +VT+DL+ + +A ++ + A+V GGGG GGRP MAQ+GG + K + A Sbjct: 812 TLGD-KVNFVAMVTKDLVAKGAHAGNIIKEVARVAGGGG-GGRPDMAQAGGKDPAKLEAA 869 Query: 889 IAGVASFLKK 898 + +++ Sbjct: 870 LQKAYEVIEQ 879 >gi|253990685|ref|YP_003042041.1| alanyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782135|emb|CAQ85299.1| Alanyl-tRNA synthetase [Photorhabdus asymbiotica] Length = 876 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 387/910 (42%), Positives = 543/910 (59%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGKDWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D EA+ +W+ G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYHTDNEAYDIWQNKVGIPAERIIRIGDNKGVPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF + LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI A VTG + NN + RVI DH+RS +FLI DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVANVTGATDDLNNK-SLRVIADHIRSCAFLIGDGVI 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG T+ L+ L MG+A L + ++E+ L Sbjct: 302 PSNENRGYVLRRIIRRAIRHGNMLGATDTFFYKLVAPLIEVMGAAGEGLKHQQAIVEQVL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L L +IL+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 KTEEEQFARTLERGLQLLDDELVKLS-GDILDGETAFRLYDTYGFPVDLTADVCRERNIK 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+E QR RAR S + L + + F GYD Sbjct: 421 -VDEDGFAVAMENQRRRARE------SSGFGADYNELIKVDERSDFSGYDH--------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N + V AI + GE V + +G++ V+ D+T FYAE+GGQ+GD+ Sbjct: 465 --------------NEQQAKVTAIFRNGESVNQIQAGEEAIVILDKTAFYAESGGQVGDS 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK H +E+G L L ID + R + +NHSATH Sbjct: 511 GILSNADCAFCVIDTQKYG-QAIGHIGKLEKGTLSVNHELNAVIDVKRRDAIRLNHSATH 569 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + + +++ +ED VN I +N V+T Sbjct: 570 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAEIRKNSSVIT 629 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A GA AL G KY ++VRV+S+ G S+ LCGGTH S TG+I L I Sbjct: 630 ELMDLEAAKVKGAMALFGEKYEEKVRVLSM-----GNFSTELCGGTHASRTGDIGLFRIT 684 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES AGIRRIEAITG++A + Q + L+ +A +K N+ +V I ++ + L+ Sbjct: 685 AESGTAAGIRRIEAITGKKALESVYQQFDLLQDIAQLVKGDINNLNDKVRGILDKTKVLE 744 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ S ++ V + ++ + K L++++D L+ ++ S II+ Sbjct: 745 KELQQIKDQNAAQESSSLASKAKEVKGVKLLVSQLNNTEPKTLRTMVDDLKNQLGSAIIV 804 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+++ VT+DL R A +L A+ + GG GGGRP MAQ+GG + Sbjct: 805 L-STISDDKVSLIVGVTKDLTARIKAGELISSIAQQI-GGKGGGRPDMAQAGGSDVKSLP 862 Query: 887 QAIAGVASFL 896 A+ V ++ Sbjct: 863 SALDSVEDWV 872 >gi|205830256|sp|A4XWE2|SYA_PSEMY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 401/912 (43%), Positives = 550/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+++W K G+ A+++IRI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD GE I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ AS + G + +V+ DH+RS SFLIADG+ Sbjct: 241 RISAVLQHVNSNYEIDLFQNLLAASAKAIGCA--NEGQASLKVVADHIRSCSFLIADGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L Sbjct: 299 PSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ GD+ FKLYDT+G P+D+ DI R L+ Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAGLQ-GSVIPGDIVFKLYDTYGFPVDLTADIARERELS 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + +L + T+F+GY+ G Sbjct: 418 -VDEEGFEREMEAQRERARSASAFGM------DYNALVKVDADTRFLGYEGTSG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + A+ + G V+ G++ VV DQTPFYAE+GGQ+GD Sbjct: 465 -----------------SGKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+R + D K F+HH +V +G L S+ + R+ ++NHSATH Sbjct: 508 GYLESAGMRFDVRDTTKAGG-AFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +LK +ED VN I +N V T Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I Sbjct: 627 EETDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +E+LK AS +K S+ NV+ ++ + E R+L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLE 742 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + S + ++ + +D K L +++D L+ K+ SG+I+ Sbjct: 743 KELEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G+ ++K ++ VT+DL + A DL R +A +GG G GGRP MAQ GG + K D Sbjct: 803 LGGVF-DEKVVLVAGVTQDLTAKLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGVDAGKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A A+F+++ Sbjct: 861 EALALAATFVEQ 872 >gi|262273675|ref|ZP_06051488.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886] gi|262222090|gb|EEY73402.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886] Length = 860 Score = 899 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 376/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FLEFF+ GH ++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEIRRAFLEFFESKGHAIVSSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF LW + G+ AD+I+RI DNFW M +TGPCGPC+ Sbjct: 123 KERLMVTVYETDDEAFALWNEKIGIPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQ+ + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQYNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A ++Q +NY+ID+F+ LI+++ +V G Y+ + + RV+ DH+RS +FLI DG++P Sbjct: 243 IAAIMQGVHSNYEIDVFQTLIKSAAEVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T L+ L MGSA EL + + ++E+ L+ Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLVGPLAEVMGSAGEELKKQQAVVEKVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMAILNDALEALD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+E QR RAR G + ++ + G + F GY G Sbjct: 419 IDEEGFEAAMEAQRQRAREA------GQFGTDYNAVIKVDGESAFTGYGATEG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ I G E + + ++ DQTPFYAE+GGQ GDTG Sbjct: 466 ----------------EGLITNIFVDGMASEALATADEAVIILDQTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + ++ D QK H + G L ++ +D + R+ +++NHSATHL Sbjct: 510 FLVTEAGKFEVIDTQKYGA-AIGHRGKLVDGTLSVGDTVDAKVDAERRQAIALNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + +GLRFD +H + + EL+++E VN+ I +N V T Sbjct: 569 LHEALRVVLGEHVQQKGSLVRAEGLRFDFSHLEAVKPEELRAVEKLVNEHIRRNHEVSTE 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN E A A GA AL G KY+D VRV+++ G S LCGGTH + TG+I +L IVS Sbjct: 629 IMNIEAAKAKGAMALFGEKYDDNVRVLTM-----GDFSIELCGGTHANRTGDIGMLKIVS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AG+RRIEA+TGQ A Q + +V E R L+ Sbjct: 684 EGGIAAGVRRIEAVTGQGAEEAFYSQQQ--------------EFAKKVSESQNRARLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L ++ + +I + + + DSK L++++D L+ ++ SG++ L Sbjct: 730 EIQLLKEKLAAQESANLINNVEEINGIKVLISKLDGADSKALRTMVDDLKNQMGSGVVFL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 790 ANVA-DDKVGLIAGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDVAALPA 847 Query: 888 AIAGVASFLKK 898 A+A V+ +L + Sbjct: 848 ALASVSPWLAE 858 >gi|254487494|ref|ZP_05100699.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101] gi|214044363|gb|EEB85001.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101] Length = 885 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 431/895 (48%), Positives = 570/895 (63%), Gaps = 39/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+++GH + PSS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MKTLNDIRSTFLGYFERHGHSVQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI +W+L+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RLY+TVY D+EA +WKK++GL ++IIRI T+DNFW M TGPCGPCSEIF+D G Sbjct: 121 DPKRLYVTVYHTDDEAADIWKKVAGLPDERIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFPDGTRKPLPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL ++LI AS + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRNLILASANASNTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGIQDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L L + L+G+ AFKLYDT+G P+D+ QD L + + +D+ F+ Sbjct: 361 KTLDRGLKLLDDELKGLPEGANLSGEAAFKLYDTYGFPVDLTQDALREQDRS-VDLEGFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ ARA G G +WF + E G T F+GYD Sbjct: 420 AAMEKQKALARAAWSGSGEAADATVWFDVAENAGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G V+ A +G KV++ +QTPFYAE+GGQ+GDTG + Sbjct: 462 -----TETAEGQIVALIQDGAQVDAAKTGDKVQIALNQTPFYAESGGQVGDTGLIKTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K A +F+H V G + T + VL +D+ R + NHSATHLLH AL Sbjct: 517 SVTVTDTRKTAG-VFIHFGDVTEGTITTGQAAVLDVDHARRTSIRANHSATHLLHEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+ P+++ EL +E VN I QN PV TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAADRLRFDYSHNSPMSAEELAQVEQEVNTYIRQNAPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ D +S LCGGTHV TG+I ++ Sbjct: 636 RGLGAQALFGEKYGDEVRVVSMGRQPGSGKGADKSTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +SS +G+RRIEA+TG A S L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSSSSSGVRRIEALTGTEALSWLRAQETALSRVAAELKTSTADVPDRVRALLDERRALAN 755 Query: 773 IHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ + +L + + FM+ ++S V K+L +++D + K+ SG+++L Sbjct: 756 EVAQLRRELAMSGGGAAAPEARDVNGMKFMAQVLSGVTGKDLPALVDEYKAKLGSGVVLL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + + KA+V VT DL + +AVD+A+ + LGG GGGGRP MAQ G + Sbjct: 816 IA-DADGKAAVAAGVTADLTSQVSAVDIAKAAVAELGGKGGGGRPDMAQGGAKDV 869 >gi|114046704|ref|YP_737254.1| alanyl-tRNA synthetase [Shewanella sp. MR-7] gi|123030800|sp|Q0HXF8|SYA_SHESR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113888146|gb|ABI42197.1| alanyl-tRNA synthetase [Shewanella sp. MR-7] Length = 874 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 379/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + GI ++D QK + + G L L +D + R + +NHS THLLH Sbjct: 511 VAQGIEFAVSDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKVQLDKMKQLEKDM 744 Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K +L + + VN + + V++ L+ + D L++K++S +I+L G Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 + V ++ + Sbjct: 863 SQVLPWITE 871 >gi|254480113|ref|ZP_05093361.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] gi|214039675|gb|EEB80334.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] Length = 866 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 387/903 (42%), Positives = 552/903 (61%), Gaps = 47/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M V IR FL++F+++ H+ + SSSL+P +DPTL+FTN+GMV FK+ F G + Y Sbjct: 1 MKTV-EIREAFLDYFEQHEHQRVASSSLVPGDDPTLLFTNAGMVQFKDTFLGNDPRSYVR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT L Sbjct: 60 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWNFLTGTLGL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++T + D+EA +LW G ++I R+ DNFW M +TGPCGPC+EIF+D G Sbjct: 120 PPERLWVTCHVSDDEAEELWVNEIGFPRERITRL-DEDNFWQMGDTGPCGPCTEIFYDHG 178 Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS EE +RYIEIWNLVFMQF + + + LP S+DTGMGLER+A V+Q+ Sbjct: 179 PDVPGGPPGSPEEDMDRYIEIWNLVFMQFNRDSSGKMHPLPAPSVDTGMGLERIAAVMQQ 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+++ + + +N + RVI DH+RS +FLIADG+LP NEGRGY Sbjct: 239 VHSNYEIDLFQALIKSAASILDVDDLEHN--SLRVIADHIRSCAFLIADGVLPGNEGRGY 296 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG T+P L L EMG AYPEL++ + IE+ L +E+E+F Sbjct: 297 VLRRIIRRAVRHGNKLGATQPFFFQLTATLAKEMGGAYPELVKLQPQIEKALLTEEEQFA 356 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD G+ +L+ L+ L DEI GDV FKLYDT G P+D+ DI R L +DI ++ Sbjct: 357 KTLDNGMQILEEALAGLQGDEI-PGDVVFKLYDTFGFPVDLTNDIARERELR-LDIAGYD 414 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +QR+R++ G+ + + + G+T+F GYD LRG Sbjct: 415 AAMAQQRTRSQEG------GSFKLDYNDALKLEGSTEFTGYDSLRG-------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A+++ GE V+ + + VV TPFY E+GGQ+GDTG +G+ Sbjct: 455 ---------EGTVTALLKDGEEVDFLGTDESGIVVLSSTPFYGESGGQVGDTGYITAEGL 505 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L++T+ KA +HH G +R + +D R++ +NHSATHLLH AL + Sbjct: 506 KLEVTNT-TKASDQHLHHVNTLTGTIRQGDIVHSVVDDSLRQRTRLNHSATHLLHSALRS 564 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + + LRFD +H + +T ELK IE VND + N V TR+M+ ++A Sbjct: 565 VLGDHVQQKGSLVDSERLRFDFSHFEGVTGEELKRIESIVNDQVRANTEVSTRVMSMDEA 624 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L+ I SES + AG Sbjct: 625 IEAGATALFGEKYGDEVRVLSMGE---AGFSVELCGGTHVARTGDIGLMRITSESGVAAG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIE +TG A + + L ++ +K + NV +V + +E R+L+ A+ K Sbjct: 682 VRRIEGVTGAGALGQIDVTERYLAAVCDVVKGNSVNVADKVAGLRQENRELEKEVARLKQ 741 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + ++A + ++ + D+K L+ V+D ++ K+ SG+I+L ++ + Sbjct: 742 KLATGAGTDLTAAAVEVAGIKVLAVNVEGADAKSLRDVLDQVKNKLGSGVILLSAVT-DD 800 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++ VT+DL D+ A DL R A L GG GGGRP MAQ GG + + + V Sbjct: 801 KVALTAGVTKDLTDKIKAGDLMREFATRL-GGKGGGRPDMAQGGGSDVAALTEVLKSVPD 859 Query: 895 FLK 897 +++ Sbjct: 860 WVQ 862 >gi|322421559|ref|YP_004200782.1| alanyl-tRNA synthetase [Geobacter sp. M18] gi|320127946|gb|ADW15506.1| alanyl-tRNA synthetase [Geobacter sp. M18] Length = 875 Score = 898 bits (2320), Expect = 0.0, Method: Composition-based stats. Identities = 385/906 (42%), Positives = 538/906 (59%), Gaps = 43/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F FFQK GH L+ SS+LIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTGKEIRAQFFNFFQKKGHTLVESSNLIPKNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L Sbjct: 61 VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTVELGLS 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY+TVY +D+EA +W + G+ ++I R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 SDRLYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWN VFMQF + LPK S+DTGMGLER++ V+Q Sbjct: 181 GTGCGSPACAVGCDCDRYMEIWNNVFMQFNRSKDGTLTPLPKPSVDTGMGLERISAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 T+NYD DL + +I+ EQV+G KY + + V+ RVI DH R+ +FLI DG+LP+NEGR Sbjct: 241 VTSNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG EP++ ++ A+ MG AYPEL++ + +++ + +E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLYRVVDAVNVMMGEAYPELLEREHYVKKVILAEEER 360 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ + +++G+V FKLYDT G P+D+ DI+ A G +D Sbjct: 361 FIETLDRGLAILNEETAAMKAKGASVISGEVIFKLYDTFGFPVDLTADIVEAEGFT-LDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR +AR + G G I+ L+ A++F+GY Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELRGTGIASEFVGY--------------- 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + AI++ G +VEE +G ++E+V +TPFY E+GGQ GDTG Sbjct: 465 --------AEQTAYSTISAIIKGGVLVEEGNAGDEIEIVTAKTPFYGESGGQAGDTGTIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +++T + + VH V G +R ++ L + +R + NH+ATHLL Sbjct: 517 TGSAHVEVTASTRPFPDLIVHRGKVVSGNIRNGEAVDLKVATAHRAATARNHTATHLLQA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS +TPD LRFD TH P+T+ E++ +E VN I N PV R M Sbjct: 577 ALREVLGEHVKQAGSLVTPDRLRFDFTHFSPMTAEEMRRVEVLVNGHIMGNSPVDAREMP 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A+A GA AL G KY D VRVV V G SS LCGGTHV GEI I+SE+ Sbjct: 637 ATEALAGGATALFGEKYGDIVRVVRV-----GDVSSELCGGTHVHGAGEIGFFKILSEAG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA TG A + + +++ + +A+ LK G+ + RVE++ R+LQ Sbjct: 692 IAAGVRRIEAQTGNGALAVVHQMEDEQRGIATLLKAEGGSTLDRVEKLLASQRELQKELE 751 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN + + + ++ + D+K L+ + D L+ +I SGII+L Sbjct: 752 ALQAKLNANKSADLIQQVREQNGIKILAVKVEG-DAKGLRELSDTLKARIGSGIIVLGAA 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 KA++L+ VT DL R+ A D+ + A ++ GG GGG+P +AQ+GG +A+ Sbjct: 811 DA-AKANLLVAVTSDLASRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPENLAEALE 868 Query: 891 GVASFL 896 V + Sbjct: 869 AVFQIV 874 >gi|39995259|ref|NP_951210.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA] gi|48428506|sp|P61701|SYA_GEOSL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39982021|gb|AAR33483.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA] gi|298504264|gb|ADI82987.1| alanyl-tRNA synthetase [Geobacter sulfurreducens KN400] Length = 875 Score = 898 bits (2320), Expect = 0.0, Method: Composition-based stats. Identities = 375/906 (41%), Positives = 538/906 (59%), Gaps = 43/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF GH ++PSS LIP NDPTL+F N+GM FK+ F G EK Y Sbjct: 1 MTGKEIRARFLKFFADRGHAVVPSSPLIPHNDPTLLFANAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD Sbjct: 61 CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA +W G+ ++I R DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 KDRLYVTVYTDDDEAADIWHLQEGVPRERIYRFGEKDNFWAMGDTGPCGPCSEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + +RY+EIWN VFMQF + LPK S+DTGMGLER++TV+Q Sbjct: 181 EVGCGSPDCAVGCDCDRYMEIWNNVFMQFNRSADGVLTPLPKPSVDTGMGLERISTVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD DLF+ +I E+++G +Y + V+ RV+ DH+R+++FLI DG+LP+NEGR Sbjct: 241 VKSNYDTDLFQGIIGHVEKLSGKRYRHSEKDDVSMRVMADHVRATTFLICDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG+ EP++ ++ A+ MG AYPEL++ + I + +R+E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVICRMVEAVNAMMGDAYPELLEREEYIRKVIRAEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ ++ L ++ G+ F+LYDT G P D+ DI+ + G ID Sbjct: 361 FAETLDRGLAILNEAVADLKNEGRTVIPGETLFRLYDTFGFPTDLTADIVRSEGFT-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E QR +AR H G G ++ +L + ++F GY+ Sbjct: 420 DGFEACMERQREQAREHWKGSGEEGIAEVHKTLHSRGVRSRFTGYE-------------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V +++ G V EA +G +VE++ D TPFY E+GGQ+GDTG Sbjct: 466 ---------ARTAYSPVTVLLKGGAEVAEATAGDRVEIITDATPFYGESGGQVGDTGTIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +++T+ + + VH V G +R + L + + NH+ATHLL Sbjct: 517 TGSAHVEVTETLRPFPDLIVHRGTVVEGTIRQGDACDLKVAPGRD-ATARNHTATHLLQS 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q+GS + PD LRFD TH +T E++ +E+ VN I N V R M Sbjct: 576 ALRQVLGDHVKQSGSLVGPDRLRFDFTHFAAMTPEEIRRVEEIVNSCIMANDDVHAREMA 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A+ GA AL G KY D VRVV V G S LCGGTHV + G+I I+SE+ Sbjct: 636 LDEAMEIGATALFGEKYGDTVRVVRV-----GEVSMELCGGTHVHAAGDIGFFKILSEAG 690 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG A H+ +++ K +A+ +K G+ V R++ + + +Q Sbjct: 691 IAAGVRRIEALTGMGALRHVQQLEDERKEIAALIKAEGGDNVERLQRLLTRQKDMQREIE 750 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN ++ V ++ + D K+L+ + D L+ ++ SG++ L G Sbjct: 751 TLESRLNAARSADLLADVREVNGVKVLATLAEVDDPKKLRELADTLKDRLGSGVVAL-GC 809 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 KE KA++L+ VT+DL R A DL R + ++GG G GG+P +AQ+GG +K +A+ Sbjct: 810 VKEGKANLLVAVTKDLTGRVKAGDLIRQLSPIIGGSG-GGKPELAQAGGTLPDKLGEALG 868 Query: 891 GVASFL 896 V + Sbjct: 869 KVCELV 874 >gi|83951874|ref|ZP_00960606.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM] gi|83836880|gb|EAP76177.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM] Length = 888 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 440/912 (48%), Positives = 585/912 (64%), Gaps = 41/912 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL F+++N H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MPTLNEIRSTFLNFYERNDHQIVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA ++WKK +GLS D+IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 121 NKDKLLVTVYHTDDEAAEIWKKYAGLSDDRIIRIATDDNFWSMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 181 PEIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTMRELDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS VT +G ++HRVI DHLRSS+FLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHVTSQDPDGPGNIHHRVIADHLRSSAFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 V+RRIMRRAM +A LLG +P+M L+PAL T+MG A+PEL +A+ LI+ETL+ E+ RF Sbjct: 301 VVRRIMRRAMRHAHLLGAKDPVMHQLVPALVTQMGQAFPELGRAQSLIQETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L + L G AFKLYDT+G PLD+ QD L +G +D+ F+ Sbjct: 361 QTLDRGLRLLDDELGGLPEGAALPGQTAFKLYDTYGFPLDLTQDALREKGRE-VDVSGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IWF + E +G T F+GYD Sbjct: 420 EAMAEQKAKARAAWSGSGEAADATIWFDIAESHGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G V+ A G V+++ +QTPFYAE+GGQ+GDTG Sbjct: 462 -----TETAEGQIVALVADGAEVKSAGKGDSVQIILNQTPFYAESGGQVGDTGVIRSAEG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD +K G+F+H V G L + L +D+ R + NHSATHLLH AL Sbjct: 517 AAKITDT-RKVAGVFIHIGEVTEGKLVAGAAAQLEVDHTRRTAIRANHSATHLLHEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +HSK +++ EL + VN+ I QN V TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSKAMSADELDQVAREVNEYIRQNTRVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I + I+ Sbjct: 636 RDIGAQALFGEKYGDEVRVVSMGSLDGSGKGLDGTTYSIELCGGTHVRQTGDIGMFVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ +G+RRIEA+TG AR +L QD ++ SL ++ ++V RV + +E + L Sbjct: 696 DSASSSGVRRIEALTGDAARGYLAAQDARVASLTGEMRCKPEDLVARVRGLLDERKALTN 755 Query: 773 IHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A+ + +L + S +I V + ++S V K+L +++D + ++ SG + Sbjct: 756 EVAQLRRELAMAGGSGGAASDDLREINGVKLHAQVLSGVSGKDLPALIDEHKSRLGSGAV 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L+ K +V VT+DL +R +AV++ R +A LGG GGGGR MAQ GG + +KA Sbjct: 816 LLIA-DTGGKVAVAAGVTDDLTERLSAVEMVRAAAPALGGKGGGGRADMAQGGGADASKA 874 Query: 886 DQAIAGVASFLK 897 D+AIA V + ++ Sbjct: 875 DEAIAAVETLIE 886 >gi|192292738|ref|YP_001993343.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] gi|192286487|gb|ACF02868.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] Length = 889 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 458/899 (50%), Positives = 607/899 (67%), Gaps = 39/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG P E+G+R++E WNLVFMQ++Q K ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG +DI SF Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-INVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WFSL+EK GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ +G+ ++ +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +TD KKA +FVH VE+G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N VVTR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ AG+RRIEA+TG+ AR + K AS L+ + ++ R+ + +E +KL+ Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756 Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ + +L + I + M+ + ++ K+LK ++D +K++ SG+I Sbjct: 757 LSEARKKLAMGGSASGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875 >gi|332185154|ref|ZP_08386903.1| alanyl-tRNA synthetase [Sphingomonas sp. S17] gi|332014878|gb|EGI56934.1| alanyl-tRNA synthetase [Sphingomonas sp. S17] Length = 882 Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats. Identities = 437/904 (48%), Positives = 593/904 (65%), Gaps = 32/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR FL++F GH+++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSTNDIRRGFLDYFGSQGHQIVPSAPLVPQNDPTLMFVNAGMVPFKNVFTGLETRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTK + + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKVWGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL KIIRI T DNFW+M E GPCGPCSEIF+D G Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPDHKIIRIPTKDNFWAMGENGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQFEQ+ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIYGGPPGSPEEDGDRFVEIWNLVFMQFEQEANEIVGELPKKSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T K E +HRVI DHLRS+ FL+ADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFKALIAASCELTHTKAEDGQKASHRVIADHLRSAGFLVADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+PAL EMG+AYPEL++A+ LIE TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPALVAEMGAAYPELVRAQPLIEATLKQEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL LLD + + L G+ AFKLYDT+G P D+ +D L A+ L+ +D F+ Sbjct: 361 QTLDKGLKLLDEATAGMAPGATLAGETAFKLYDTYGFPYDLTEDALRAQNLS-VDRAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ ARA G G+ ++ +WF + E+ G+T+F+GY Sbjct: 420 AAMAEQKRAARAAWKGSGAKASDDVWFDIAEETGSTEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A+V+ G V+ A +G V ++ +QTPFY E+GGQ+GD+G D Sbjct: 461 ----ASDTGEGEVLALVKDGARVDSAGAGDTVSIIVNQTPFYGESGGQVGDSGTISSDTG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +TD K+ +FVH+A ++ G ++ S+ L ID R + NHSATHLLH AL Sbjct: 517 LKAVVTDTSKQLGRVFVHNAEIQEGGIKVGDSVKLAIDTTRRAAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + P+ LRFD + +T+ ++ +E VN+ + N PVVTR+M ++ Sbjct: 577 QRLGTHVAQKGSLVAPERLRFDFSQPVGMTADDIAEVEAKVNEQVRGNGPVVTRLMTPDE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI GA AL G KY D VRVVS+ + G +S LCGGTHV++ GEI + IVSE ++ + Sbjct: 637 AIEMGAMALFGEKYGDEVRVVSMGEDADGTYSLELCGGTHVNALGEIGVFKIVSEGAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RR+EA+TG+ AR++L +D+ LK+ A+ LK + V GR+ + EE R+L+ A+ K Sbjct: 697 GVRRVEALTGEGARAYLSHRDDMLKAAAATLKTTPDEVPGRIAALVEERRRLERELAEAK 756 Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 L + + +I DV F+ ++ ++K L+ +D ++++ + ++ Sbjct: 757 KALAMGGGAGGAAAGPEQIGDVAFIGQVLDGFEAKGLRGAVDDAKQRLGGSGVAVMVAVN 816 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + +ASV + VT+DL + NAVDL R + LGG GGGGRP MAQ GGP+G K +A+ V Sbjct: 817 DGRASVAVGVTDDLTAKHNAVDLLRKAVAALGGQGGGGRPDMAQGGGPDGTKGAEALQAV 876 Query: 893 ASFL 896 L Sbjct: 877 RDAL 880 >gi|205830243|sp|Q1GHA1|SYA_SILST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 883 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 440/909 (48%), Positives = 588/909 (64%), Gaps = 39/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++ Y Sbjct: 1 MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T EFD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK G+ ++IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKK-VGVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK+LI+AS VT + G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 240 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG T+P+M L+PAL ++MG+AYPEL Q + LIEET E+ RF Sbjct: 300 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L K ++L G+ AFKLYDT G PLD+ QD L A+G +D F+ Sbjct: 360 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKG-IEVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG T K++F + + G T+F+GY+ Sbjct: 419 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G V+ A +G+ V+++ +QTPFY E+GGQ+GD+G +G Sbjct: 461 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK EG+F+H A V G + + +D+ R Q+ NHSATHLLH AL Sbjct: 516 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ +L I VND I QN V TRIM +DA Sbjct: 575 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY + VRVVS+ DG +S LCGGTHV TG+I I+ + Sbjct: 635 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK +V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 754 Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K Q+ +I F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + AD+A Sbjct: 815 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 873 Query: 889 IAGVASFLK 897 I + LK Sbjct: 874 IKAAEALLK 882 >gi|289208781|ref|YP_003460847.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] gi|288944412|gb|ADC72111.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] Length = 869 Score = 897 bits (2318), Expect = 0.0, Method: Composition-based stats. Identities = 370/908 (40%), Positives = 527/908 (58%), Gaps = 52/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FLEFF+ +GH ++ SS L+P NDPTL+FTN+GMV FK++F G+EK Y Sbjct: 1 MKSADIRRSFLEFFEGHGHTIVSSSPLVPGNDPTLLFTNAGMVQFKDVFLGREKRSYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT+ L Sbjct: 61 VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWQFLTETIGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEIF 176 +L++TVY+ D++A+ +W + A++I+RI DNFW M +TGPCGPC+E+F Sbjct: 121 PEKLWVTVYETDDDAYNVWANEIQVPAERIVRIGDKPDGGSDNFWQMGDTGPCGPCTEVF 180 Query: 177 FDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG P E+G+RYIEIWNLVFMQ+++ LP+ S+DTGMGLER+A Sbjct: 181 YDHGPEVEGGPPGSPDEDGDRYIEIWNLVFMQYDRDADGTLNPLPRPSVDTGMGLERLAA 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF+ LI A+ +VTG K + + RVI DH+RS +FLI DG+LP+NE Sbjct: 241 VLQGVHSNYEIDLFQDLIAAAARVTGAK--EQDSASLRVIADHIRSIAFLITDGVLPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA + +G + + ++ L MG A+PEL +A+ +E+ L E+ Sbjct: 299 GRGYVLRRIIRRAARHGFKVGAQDAFLYQMVGDLVRVMGEAFPELAEAQARVEQVLEKEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +F +TLD+G+ +L+ L L +++ G+ F LYDT+G P+D+ DI RGL +D+ Sbjct: 359 RKFLETLDKGMKILEDDLRDLE-GKVIPGETIFLLYDTYGFPVDLTGDIARERGLE-LDM 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A+ + + L + T F GY+ + Sbjct: 417 AGFESAMA------DQRARARAASHFSMDDGGLPQIDLETTFSGYETVDD---------- 460 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V A+ Q GE VE G + VV D+TPFY E+GGQ+GD G Sbjct: 461 -------------EGRVVALYQNGEPVERLEVGAEGLVVLDRTPFYGESGGQVGDVGTLS 507 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G G+R Q+ D +K+ V G L +L ++ R + +HSATHLLH Sbjct: 508 GSGVRFQVADTRKQGAAHIHV-GQVRAGTLEVGQTLQAAVEGPRRENIRRHHSATHLLHK 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV Q GS + PD LRFD TH +P+T +L++IE VN I N TR+M+ Sbjct: 567 ALRDQLGDHVQQKGSLVDPDRLRFDFTHMEPLTDEQLRAIEAQVNAEILANEATDTRVMD 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A+ SGA AL G KY D+VRV+ + S LCGGTHV TG+I L I SE Sbjct: 627 IESAMESGAVALFGEKYGDQVRVLKIG------TSVELCGGTHVDRTGDIGLFRITSEGG 680 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G+ A + Q L ++A L+ +G +V ++ E R+L+ Sbjct: 681 VAAGIRRIEAVAGEVALRWVDEQLGYLDAIADRLRAGRGEAADKVAQLQERSRELEKQIE 740 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L + S ++ V ++ I V+ K L+ ++D L++K+ +++L Sbjct: 741 QLKGKLASQAGSDLASQAQEVGGVQVLAAKIDGVEPKALRDMVDQLKQKLGKAVVVLGTA 800 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + E K S++ VT+ +F A DL A + G GGGRP MA +GG + +K D A+A Sbjct: 801 TGEGKVSLVAGVTKAETGQFKAGDLVGHVAAQV-DGKGGGRPDMAMAGGQSPDKLDAALA 859 Query: 891 GVASFLKK 898 VA ++++ Sbjct: 860 SVADWVRE 867 >gi|302877754|ref|YP_003846318.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2] gi|302580543|gb|ADL54554.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2] Length = 873 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 373/911 (40%), Positives = 531/911 (58%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSSEIRQQFLDFFASKGHAIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 61 ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWELLTEVFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RLY+TVY ED+EA+ +W K GL A ++IRI N DNFW M +TGPCGPC+E Sbjct: 121 KERLYVTVYAEDDEAYDIWTKEMGLEASRVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GGLP E+G+R+IEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGEHISGGLPGTPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + VLQ NY+IDLF+ LI A+ + T + + +V+ DH+R+ SFLIADG++P Sbjct: 241 SAVLQHVHANYEIDLFQALINAAARETNCSDM--DSPSLKVLADHIRACSFLIADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRG+VLRRI+RRA+ + LG E L+P L +MG AYPEL A+ ++ L+ Sbjct: 299 NEGRGFVLRRIIRRAIRHGYKLGAREAFFYKLVPDLVAQMGVAYPELTAAQDRVKGVLKL 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF T++ G+ +L+ L + + + + NG+ AFKL+DT G P+D+ D+ G+ Sbjct: 359 EEERFFATIENGMAILEADLLAMKQAGNTVFNGETAFKLHDTFGFPVDLTADVCREHGVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D+ +F+ A+ +Q+ +ARA + +L+ + AT F GY+ L + Sbjct: 419 -VDVAAFDAAMAQQKQQARAAGKFKMAA-------NLEYEGPATLFHGYETLEHA----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G V E G VV D TPFYAE+GGQ GD+ Sbjct: 466 ------------------GCVLALYKDGVSVGELNEGDTGVVVLDNTPFYAESGGQTGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK +F HH +++ G L + ++ RR NHS TH Sbjct: 508 GELRGSHGIFAVEDTQKIQAAVFGHHGVLKTGKLLVGNGVQARVNMAARRATERNHSVTH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD HS+P+T +E+ +E VN I N + Sbjct: 568 LMHKALREVLGAHVQQKGSQVDADKTRFDFVHSQPVTDSEVLRVEFIVNAEILSNAASQS 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M EDA +GA L G KY D VRV+++ S LCGGTHV+ TG+I L IV Sbjct: 628 RVMGIEDAQQTGAMMLFGEKYGDEVRVLNIGS------SIELCGGTHVARTGDIGLFKIV 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES + AG+RRIEA+TG+ A + Q +L+++A +K GR+ ++ + + L+ Sbjct: 682 SESGVAAGVRRIEAVTGEGALDLIQMQQRQLRAVADAVKAQPHEAAGRIAQLLDHQKSLE 741 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L I V ++ ++ D+ L+ +D L+ K++S +I+ Sbjct: 742 KELTALKSKLASAQGDELVAQAQDINGVKVLAALLPGADAAILRETLDKLKDKLKSAVIL 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K +++ VT D + A +L ++A+ + GG GGGRP MAQ+GG Sbjct: 802 LASVT-DGKVALIAGVTADQTAKVKAGELVNMAAQKV-GGKGGGRPDMAQAGGTQPEHLA 859 Query: 887 QAIAGVASFLK 897 A+A V +++ Sbjct: 860 AALASVTDWVR 870 >gi|197336333|ref|YP_002155293.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11] gi|197317823|gb|ACH67270.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11] Length = 859 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 376/905 (41%), Positives = 534/905 (59%), Gaps = 58/905 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 ADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+ + +V G Y+ + + RV+ DH+RS S+LI DG++P+ Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ L+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ LL+ L +L +L+G+ FKLYDT+G P D+ D+ R L I Sbjct: 361 EEENFGRTLERGMALLNEALDNLE-GTVLDGETVFKLYDTYGFPADLTNDVARERDLT-I 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR G + ++ + T F GYD Sbjct: 419 DEDGFEKAMEEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDSTE--------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V A+ ++GE V+ +G + ++ DQTPFYAE+GGQ GD G Sbjct: 464 --------------AKASVIALFREGEEVDALSAGDEAILILDQTPFYAESGGQCGDAGI 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + +TD K HH + G+L + +D R + +NHSATHLL Sbjct: 510 ITVETGKFVVTDTHKIGN-AIGHHGKLVEGVLSKADHAMAQVDETRRAAIILNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + + + EL+ +E VN I N + T + Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG+ A + Q + + +++ +E ++L+ Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADK-------KLNEAASKAKQLEKEIQQLKDK 736 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A ++ + +IA + + D+K L+ ++D L+ +I SGIIML +S E Sbjct: 737 LASQESASLIN--KVQEIAGTKVLVAQLDGADNKALRGMVDELKNQIGSGIIMLGNVS-E 793 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++ VT+DL+ + A +L + A+ + GG GGGRP MAQ+GG + A+A V Sbjct: 794 GKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNALASVE 852 Query: 894 SFLKK 898 ++L + Sbjct: 853 AWLTE 857 >gi|84500806|ref|ZP_00999041.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597] gi|84390873|gb|EAQ03291.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597] Length = 892 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 441/899 (49%), Positives = 570/899 (63%), Gaps = 43/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F++ GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MQSLNDIRSTFLNYFKRQGHEIVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+TKE + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELVTKELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY D+EA +WKK++GL D+IIRI T DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTADNFWQMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R+IEIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 181 DKFWGGPPGSPEEDGDRFIEIWNLVFMQYEQFEDGTRRELDAQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRALIEASAHQTSSEPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPLMHRLVPELVRQMGEAYPELRQAQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD LS L +D L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 QTLDRGLKLLDDELSGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +WF L +++GAT F+GYD Sbjct: 420 SAMAEQKAKARAAWAGSGESADLSVWFDLADQHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+++ GE VEE SG++ +V +QTPFY EAGGQ+GDTG Sbjct: 462 -----TETAEGQILALIRDGEQVEELKSGEQGWIVTNQTPFYGEAGGQVGDTGWIRRLEN 516 Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +I V + I+ H+ +++G R ++ L +D+ R + NHSATHLLH Sbjct: 517 EDEIATVTDTQKMGAGRIYAHNVTIDQGSFRASDAVALEVDHGRRATIRANHSATHLLHE 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS PD LRFD +HS ++ EL IE +VN I QN PV TRIM Sbjct: 577 ALREALGDHVAQRGSLNAPDRLRFDFSHSAALSPEELARIERDVNAFIRQNTPVETRIMT 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709 +DA GA AL G KY D VRVVS+ G +S LCGGTHV+ TG+I Sbjct: 637 PDDARGLGAQALFGEKYGDEVRVVSMGQKATGKGAGGNTYSIELCGGTHVARTGDIGAFA 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 + SE++ AG+RRIEA+TG+ A + L G+D L + LK + VV RV+ + +E R Sbjct: 697 LTSETASSAGVRRIEALTGEAALAELRGRDTALAQIEGMLKATGPEVVSRVKAMMDERRA 756 Query: 770 LQLIHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 LQ A+ + L + +I V F++ +S V K+L +++D + +I S Sbjct: 757 LQNEVAQLRRDLAMSGGAGQGGGAETREINGVKFLAQSLSGVSGKDLPALIDQFKDQIGS 816 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G ++L+ KA+V VT DL DR +AVDL R + LGG GGGGRP MAQ GG + Sbjct: 817 GAVLLIA-DTGGKAAVAAGVTPDLTDRLSAVDLVRAAVPELGGKGGGGRPDMAQGGGAD 874 >gi|311278355|ref|YP_003940586.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1] gi|308747550|gb|ADO47302.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1] Length = 875 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 396/910 (43%), Positives = 557/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKYAWELLTGDNWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVEVMGSAGDDLKRQQAQVEQIL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V +GQ V+ DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVNSINAGQDAVVILDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFGFAVSDTQKYG-QAIGHLGKLSNGSLKVGDAVQADVDEVRRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NLPV T Sbjct: 569 LMHAALRDVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLPVET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M EDA A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L I Sbjct: 629 HVMELEDAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L + + L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAESDLLSDVAQLLKGDSHNLADKVRTVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQAAAQESASLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|99081073|ref|YP_613227.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040] gi|99037353|gb|ABF63965.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040] Length = 902 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 440/909 (48%), Positives = 588/909 (64%), Gaps = 39/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++ Y Sbjct: 20 MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T EFD+ Sbjct: 80 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK G+ ++IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKK-VGVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK+LI+AS VT + G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 259 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG T+P+M L+PAL ++MG+AYPEL Q + LIEET E+ RF Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L K ++L G+ AFKLYDT G PLD+ QD L A+G +D F+ Sbjct: 379 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKG-IEVDTDGFD 437 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG T K++F + + G T+F+GY+ Sbjct: 438 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 479 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G V+ A +G+ V+++ +QTPFY E+GGQ+GD+G +G Sbjct: 480 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 534 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK EG+F+H A V G + + +D+ R Q+ NHSATHLLH AL Sbjct: 535 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 593 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ +L I VND I QN V TRIM +DA Sbjct: 594 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 653 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY + VRVVS+ DG +S LCGGTHV TG+I I+ + Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 713 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK +V+ R++ + +E + LQ Sbjct: 714 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 773 Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K Q+ +I F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 774 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + AD+A Sbjct: 834 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 892 Query: 889 IAGVASFLK 897 I + LK Sbjct: 893 IKAAEALLK 901 >gi|237748703|ref|ZP_04579183.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13] gi|229380065|gb|EEO30156.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13] Length = 877 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 386/910 (42%), Positives = 536/910 (58%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH ++ SSSL+P NDPTLM TN+GMV FK++F G +K Y Sbjct: 8 MKSAEIRQKFLSFFEAKGHTIVRSSSLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 68 TSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY ED+EA+ +W GL ++I+RI N DNFW MA+TGPCGPCSE Sbjct: 128 ADKLWATVYYEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 187 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG P E+G+RYIEIWNLVFMQF + + LP +DTGMGLER+ Sbjct: 188 IFYDHGPDVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERL 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ + TG NN + +VI DH+R++SF+I DG++P Sbjct: 248 AAVLQHVHSNYEIDLFQNLIKAAARETGTTDLTNN--SLKVIADHIRATSFMIVDGLIPG 305 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 ++G GYVLRRI+RRA+ + LG T+P L+ L EMG+AYPEL++A ++ LR Sbjct: 306 SDGHGYVLRRIIRRALRHGYKLGQTKPFFYKLVEDLVKEMGAAYPELVEAAGYVQRVLRH 365 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERFG+TLD G+ +L+ L+ +LNG+ AF LYDT+G PLD+ DI R + + Sbjct: 366 EEERFGETLDNGMKILESALTD--SSTVLNGETAFTLYDTYGFPLDLTADICRERNMT-V 422 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F+ A+E+QR+ ARA + L+ TQF+GY+ L Sbjct: 423 DEAGFDVAMEKQRATARASGKFKMAAA-------LEYHGEKTQFVGYERLEEV------- 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V AI + G V++ +GQ +V D TPFYAE+GGQ+GD G Sbjct: 469 ----------------GTVVAIYRDGTPVDKIETGQNGVIVLDTTPFYAESGGQVGDVGT 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G+G+R + D QK + HH + G + L ++ + R Q NHS THL+ Sbjct: 513 LVGNGVRFDVEDTQKIQADVAGHHGKLVNGTITIGDKLDGRVNMEMRAQTMRNHSVTHLM 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV+Q GS + P+ RFD +H+ PIT E++ +E+ VN I N P T Sbjct: 573 HKALRQVLGSHVAQRGSLVDPEKTRFDFSHNAPITDDEIRQVEEIVNREIVANNPTETHQ 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++AIA GA AL G KY D VRV+ + S LCGGTHVS TG+I +VSE Sbjct: 633 MSFDEAIAHGATALFGEKYGDVVRVLDIG------FSCELCGGTHVSRTGDIGFFKVVSE 686 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AGIRRIEA+TG A + K+ AS LK +V R+ ++ + + L Sbjct: 687 GGVAAGIRRIEAVTGLVAMQWVQDMARKVGEAASALKTQPDELVNRIVQVQDHIKGLDRE 746 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K + I V ++ +I D L+S MD L+ K+++ I+L Sbjct: 747 LSTLKAKFASSQGDDLADKATDIKGVKVLAAMIEGADVSGLRSTMDKLKDKLKTAAIVLA 806 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D+ + A +L AK + GG GGGRP MA +GG + + D A Sbjct: 807 AV-NDGKVSLIAGVTSDMTSKLKASELVNHVAKQV-GGKGGGRPDMAAAGGTDPSGLDGA 864 Query: 889 IAGVASFLKK 898 + V ++++ Sbjct: 865 LNSVGGWVQE 874 >gi|254418413|ref|ZP_05032137.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3] gi|196184590|gb|EDX79566.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3] Length = 882 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 424/902 (47%), Positives = 569/902 (63%), Gaps = 34/902 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR T+L FF +GHE + S+ L+P NDP+L+F N+GMVPFK+ FTG KP Y Sbjct: 1 MPSLNEIRATYLNFFAADGHEKVHSAPLVPQNDPSLLFVNAGMVPFKDYFTGASKPPYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI AW L+T+EF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIDRAWKLVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY +D+EA +WKK++G DKIIRI +DNFW+M ++GPCGPC+EIF+D G Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDSGPCGPCTEIFWDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+RY+EIWN VFMQFE++N Q LPK S+DTGMGLERM TVLQ Sbjct: 181 DKIAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDQIVRNLPKPSVDTGMGLERMTTVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLFK LI ASE T K +G +HRVI DHLRSSSFLIADG+ P+NEGRGY Sbjct: 241 VHSVFETDLFKTLIAASEDATSTKSDGERAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL +A+ IE+TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVAQMGDAYPELARAQPFIEDTLKQEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ L D + ++L+G AF L DT+G PLD+ QD RG + +++ F Sbjct: 361 TTLGRGMALFDTAVQGFKPGDMLDGQTAFTLSDTYGFPLDLTQDEARRRGFS-VNVDGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR R+R H G G W +++++ G T F GYD + G Sbjct: 420 SAMAEQRQRSREHWKGSGQTANTNEWLAIRDRMGPTVFTGYDTIEG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V A++ G VE A +G VE++FD TPFYAE+GGQ GD G G Sbjct: 466 ---------SGEVLALMNGGAPVETAEAGDIVEILFDNTPFYAESGGQTGDQGTLEWPGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ DV+K A + V A + G L + +D R NHSA HLLH AL Sbjct: 517 EAEVLDVKKHAGDLHVLSAQITAGTLEIGARVAQLVDADKRMTTRANHSAAHLLHTALKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG V+Q G + + RFD +H P+T EL +IE VN +I QN+P TR+M ++A Sbjct: 577 VLGPAVAQKGQLVDSERARFDFSHGAPVTEDELAAIEAEVNAVIRQNVPAETRLMAPQEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ D +S LCGGTHV+ TG+I L +V E+ + Sbjct: 637 IEAGAIALFGEKYGDEVRVLTLGRSLVSDNAPYSVELCGGTHVARTGDIGLFKVVQETGV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ AR +L Q + ++LA K+ +V GRVE + + L+ A+ Sbjct: 697 AAGVRRIEALTGEAARLYLEAQAKVTRNLARDFKIQTQDVPGRVEALQGSVKTLEKQVAE 756 Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K QL + + +I + M+ ++ VD K L+ V + +K++ +G++ L+G++ Sbjct: 757 LKKQLALGGGSGAASAPEEIGGIKLMARVLDGVDGKGLRGVAEDFRKQVGTGVVALIGVT 816 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E KA+V + VT DL DR NA DLAR + +GG G GG+P AQ G P+G+KA+ +A Sbjct: 817 -EGKAAVTVAVTSDLTDRVNAADLARTAVIAMGGQGAGGKPDFAQGGAPDGSKAEAGLAA 875 Query: 892 VA 893 V Sbjct: 876 VR 877 >gi|326567519|gb|EGE17634.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC1] Length = 893 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 370/922 (40%), Positives = 520/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSE I AG+RRIEA+TG A ++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIVSEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + +L + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKLASLHANSLTDNLKDIHGQKVLIATVNGMDNKTLRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|145220|gb|AAA03208.1| alanyl-tRNA synthetase [Escherichia coli] Length = 876 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 391/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSS P DPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSRYPITDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT K F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N NFW M TGPC PC Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRINDNKGAPYASGNFWRMGGTGPCDPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + D QK H + G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HVS GS + LRFD +H++ + E++++ED VN +I +NLP+ T Sbjct: 569 LMHAALRQVLGTHVSHKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTLIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ + V + +S V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|2500961|sp|Q56273|SYA_THIFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1263913|emb|CAA64818.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans] Length = 877 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 391/904 (43%), Positives = 535/904 (59%), Gaps = 39/904 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +IR FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E Y+ Sbjct: 1 MQAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK I AW LT+ L Sbjct: 61 VSSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ITVY+ED+EA +W G+ ++ R DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PEKLWITVYEEDDEAADIWMNEIGVDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGG PGS E+G+RYIEIWNLVFMQF++ + LPK S+DTGMGLER+A VLQ Sbjct: 181 HIPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNYD DLFK LI A+ ++G Y + ++ RV+ DH+R+ SFLI DG+LPANEGRG Sbjct: 241 HNNYDTDLFKPLIAAAAAISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + R LG L+ L EMGSA+PEL +A+ +E L E+ RF Sbjct: 301 YVLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL+RGL LL+ ++ L + G++ F+L DT G P+D+ DI R L +D+ + Sbjct: 361 RETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGY 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+ ++RS G G TE+++ L + T+F GY Sbjct: 420 EAAMADERSPLPCRLGGSGEVKTERVYHDLAMRLPVTEFTGY------------------ 461 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 T V A+++ GE V +G V+ D+TPFY E+GGQ GD G + Sbjct: 462 -----STCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSND 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +TD QK + VH VE G L+ +V ++D RR + +HSATHLLH AL Sbjct: 517 ALFAVTDTQKPMGHLHVHLGRVESGRLQIGDMVVASVDEVARRATAAHHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILGSHV Q GS + P+ LRFD +H +P+T+A+L+ IE VN I N+ TRI+ + Sbjct: 577 NILGSHVQQKGSLVNPERLRFDFSHPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA AL G KY D VRVV + G S LCGGTHV + G+I + I+SES + A Sbjct: 637 AQALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAA 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA+TG A + +E+L++ A LKV+ + R+ + E R+L+ K K Sbjct: 692 GIRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVK 751 Query: 779 LQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 V + V + + +D K L+ +D L+ ++ G+I+L G+ +E Sbjct: 752 RDEAVRAGAGLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVERE 811 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ V + L R +A +L A+ L GG GGGRP +AQ+G N D A+ Sbjct: 812 -KVALIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGNPAALDAALNAAR 869 Query: 894 SFLK 897 ++K Sbjct: 870 DWVK 873 >gi|144899258|emb|CAM76122.1| Alanyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1] Length = 881 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 450/904 (49%), Positives = 597/904 (66%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++IR FL++F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MQTANTIRRAFLDYFAKNGHEVVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI LAW+L+TKEF L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIALAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY +D+EAF +WKK++G S D+IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 AKDKLLVTVYHDDDEAFNIWKKVAGFSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P ++G+R+IEIWNLVFMQFEQ +KQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DKIAGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKQTRLPLPKPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYD+DL + LI+AS + +G V+HRV+ DHLRSS FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDVDLLRALIEASAHESNTDADGPYKVSHRVVADHLRSSCFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L PAL +MG AYPEL +A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLWRLFPALAKQMGEAYPELGRAGALITETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLD+GL LLD L+HL L G+VAFKLYDT+G PLD+ +D L A+G G+D F Sbjct: 361 ATLDKGLKLLDDELTHLVPGAKLAGEVAFKLYDTYGFPLDLTEDALKAKG-IGVDTDGFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ AR G G TE +WF +KEK GA++F+GYD + Sbjct: 420 TAMDRQRAEARKAWSGSGEAATETLWFEIKEKTGASEFLGYDAI---------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GD 537 G + A+V+ G+ VE G +V VV +QTPFY E+GGQ+GDTG G Sbjct: 464 -------GAEGQIVALVEGGKAVEAVHPGHEVMVVANQTPFYGESGGQMGDTGIISVAGG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 R+ +TD KK + VH VE G + +D R +HSATHLLH AL Sbjct: 517 KARIVVTDTLKKLGDLIVHVGKVEGGPVAVGEDAHFAVDETRRDATRGHHSATHLLHQAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 LG HV+Q GS + PD LRFD H K +++ E++ +E VN I +N VVT++M+ + Sbjct: 577 RDALGEHVTQKGSQVGPDRLRFDFAHPKGLSTDEIRLVEAEVNRQIRKNRAVVTKLMSPD 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESS 715 DAI +GA AL G KY + VRVVS+ +D S LCGGTHV G+I I+SES+ Sbjct: 637 DAIEAGAMALFGEKYGEEVRVVSMGGDDSRPNPFSVELCGGTHVRRVGDIGGFKILSESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RR+EA+TG + Q+E L A LK + + R+ ++ E+ RKL+ + Sbjct: 697 VAAGVRRVEAVTGPAFLAWANEQEELLARAAQALKAAPAELPARIAQLVEDRRKLERELS 756 Query: 776 KRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + + QL + +I + + ++ V +K+LK + D ++K+I SG+++LV + Sbjct: 757 ETRKQLATGGGAGAATTQINGITYAGRVLDGVPAKDLKGMADEIKKQIGSGVVVLVS-ND 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 KASV++ VT+DL + +AVDL R+ ++ +GG GGGGRP MAQ+GGP+ +KA A+ + Sbjct: 816 GGKASVVVAVTDDLTAKHSAVDLVRIGSEAVGGKGGGGRPDMAQAGGPDADKAQDAVDKI 875 Query: 893 ASFL 896 A+ L Sbjct: 876 AAAL 879 >gi|66768815|ref|YP_243577.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] gi|81305217|sp|Q4UTR6|SYA_XANC8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|66574147|gb|AAY49557.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] Length = 882 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 385/909 (42%), Positives = 537/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF+LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMAPTVFLGYEAQDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG V+ A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + +++ D QK A H + G L+ L ID Q R + +NHSATHLLH Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + +V +V + + ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AA-GGKVALVAGVNGGPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 QGVPSWVKQ 879 >gi|188991930|ref|YP_001903940.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. B100] gi|205830286|sp|B0RTY1|SYA_XANCB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167733690|emb|CAP51895.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 882 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 386/909 (42%), Positives = 536/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF+LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMAPTVFLGYEAQDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG V+ A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G I +++ D QK A H + G L+ L ID Q R + +NHSATHLLH Sbjct: 518 SGTDISIEVADTQKFAGQFHGHVGRIAEGTLKLGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L AS + +V +V + + ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAASLFGGNSTEIVDKVRALTDRQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AA-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 QGVPSWVKQ 879 >gi|254505107|ref|ZP_05117258.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11] gi|222441178|gb|EEE47857.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11] Length = 885 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 455/907 (50%), Positives = 613/907 (67%), Gaps = 36/907 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ FL++F+ N HE++ S L+P NDPTLMF N+GM FKN+FTG E Y Sbjct: 1 MTGVNEIRSAFLDYFKANDHEVVDSGPLVPRNDPTLMFANAGMNQFKNVFTGLETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AVTAQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY ED++A WKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDRLLVTVYAEDDDAAVFWKKIAGLSDDKIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+R++EIWNLVFMQ+EQ R LP+ SIDTGMG+ER+ATVLQ Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQYEQTPD-SRLDLPRPSIDTGMGIERLATVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLF+ LI ASE TG++ G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 240 VHNNYDIDLFRALISASEHETGVEASGDALSSHRVISDHLRSTSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG +PLM L+P+L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELTRAEALITETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L L+G+ AFKLYDT+G PLD+ QD L +D F+ Sbjct: 360 KTLERGLGLLDTATEDLTAGGQLDGETAFKLYDTYGFPLDLTQDALR-VRDITVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE +WF++KEKYGAT F+GY+ Sbjct: 419 AAMERQKAEARAAWSGSGGAATEAVWFAMKEKYGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T IV + E +G+ VV +QTPFY E+GGQ+GDTG G+ Sbjct: 461 -----TEVAEGIVAGLAADDAETNELKAGETGFVVLNQTPFYGESGGQVGDTGVMTAPGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD QKKA+G+FVH V+ G + E++L L +D+ R + NH+ATHL+H AL Sbjct: 516 KITVTDTQKKADGLFVHVVTVDEGTVTPELALELKVDHDRRSAVRSNHTATHLVHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS ++PD LRFD +H KP++ EL +E N+II QN V TR+M +DA Sbjct: 576 VLGTHVAQKGSLVSPDRLRFDFSHPKPMSDDELAIVETFANEIILQNASVETRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I +GA AL G KY + VRVVS+ + G +S LCGGTHV TG+I L+ +VSE Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGDKTGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG AR++L QD++L+ +A LKV G+V RV ++ EE RKL+ Sbjct: 696 AVAAGVRRIEALTGAEARTYLDTQDKRLREVAGILKVGTGDVPSRVAQLVEERRKLEKEL 755 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A + +L + + M+ + ++ K+LK + D + ++ SG+++L+ Sbjct: 756 ADARKKLAMGGGADGGTPVKDAGSFKLMARTVEGINPKDLKGMADEAKTQLGSGVVVLIN 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++++ KA+++ VT DL ++ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G+KA+ A+ Sbjct: 816 VAEDGKAAIVTAVTRDLTEKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGSKAESAV 875 Query: 890 AGVASFL 896 + + + L Sbjct: 876 SAIEAHL 882 >gi|326571434|gb|EGE21449.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC7] Length = 893 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 368/922 (39%), Positives = 521/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + ++L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|149184401|ref|ZP_01862719.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21] gi|148831721|gb|EDL50154.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21] Length = 887 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 429/909 (47%), Positives = 592/909 (65%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL+FF H +PS+ L+P +DPTLMF N+GMVPFKN FTG E P Sbjct: 1 MTSTNEIRRSFLDFFASKDHAEVPSAPLVPFSDPTLMFVNAGMVPFKNAFTGLETPPAPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTK++ L Sbjct: 61 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDHAWTLLTKDWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EAF LWKK +G + ++IIRI T DNFW+M GPCGPCSEIF+D G Sbjct: 121 DKDRLLVTVYHTDDEAFDLWKKRTGFADERIIRIPTKDNFWAMGSDGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQF Q+ + LPK SIDTGMG+ER+A V+Q Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFTQEADEIVGDLPKPSIDTGMGIERVAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI ASE +TG+K EG+ +HRVI DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDTFKALIGASEALTGVKAEGDRQASHRVIADHLRSTSFLLADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG ++PLM L+P L +EMG+AYPEL++ + LI+E L E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGASQPLMHRLVPELVSEMGAAYPELVRGQALIQEVLEREETQFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL LLD +G+ L+G AFKLYDT+G P D+ +D L RG G+D F+ Sbjct: 361 RTLDKGLKLLDEATGDMGEGGTLDGGTAFKLYDTYGFPYDLTEDALRNRG-IGVDKDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G +E++WF + E+ G+T+F GY Sbjct: 420 AAMAQQKAAARAAWKGSGEAASEEVWFDIAEREGSTEFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ + V A+V+ G+ V+ A G+ V ++ +QTPFY E+GGQ GD G Sbjct: 461 ----SSDTGEAEVVALVKDGKEVDSAGEGEDVIILTNQTPFYGESGGQTGDAGRIWTPEG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ K + H A + +G ++ ++ ID + R ++ NHSATHL+H AL Sbjct: 517 LEAKVSTTNKPLGRLHTHVATIAKGNVKVGDAVHFEIDAERRDRIRANHSATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS ++ D RFD +H KP++ ++ +IE VN+ I N V TR+M +D Sbjct: 577 NRLGGHVTQKGSLVSDDRFRFDFSHPKPLSDEDIAAIEAEVNEEIRANETVGTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+A+GA AL G KY D VRV+S+ +G +S LCGGTHV +TG+I L IVSES++ Sbjct: 637 AVAAGALALFGEKYGDEVRVLSMGRKGGEGKNYSVELCGGTHVEATGDIGLFKIVSESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+TG+ AR L+ +DE ++++A+ LK S RV + +E ++L+ A+ Sbjct: 697 SSGVRRIEALTGEAARQWLLARDETVRAIAAALKTSPDEAATRVSALVDERKRLEKELAE 756 Query: 777 RK-------LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K + +I V F +I + K+L+ ++D + ++ SG+ + Sbjct: 757 AKRALALGGGGAGDAAAADEEIGGVKFSGQVIEGLSPKDLRPLLDEAKTRMGSGVAAICA 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + E K + + VT+DL +RF+AVD R + LGG GGGGRP MAQ GGP+G+KA+ AI Sbjct: 817 V-NEGKGAFAVAVTDDLTERFSAVDFVRAGVEALGGRGGGGRPDMAQGGGPDGSKAEDAI 875 Query: 890 AGVASFLKK 898 A V L K Sbjct: 876 AAVRDALAK 884 >gi|118340595|gb|ABK80645.1| putative alanyl-tRNA synthetase class IIc [uncultured marine Nitrospinaceae bacterium] Length = 878 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 362/907 (39%), Positives = 537/907 (59%), Gaps = 42/907 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R FL++F+ GH ++ S +L+P NDPTLMFTN+GMV FK++F G+EK Y Sbjct: 1 MTGDELRKKFLQYFEDRGHTVVSSYALVPKNDPTLMFTNAGMVQFKDVFLGEEKRDYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQKCVRAGGKHNDL+ VGRT+RHHTFFEMLGNFSFG YFK+ AIQ W+ LT L Sbjct: 61 VSVQKCVRAGGKHNDLEMVGRTSRHHTFFEMLGNFSFGDYFKKEAIQFGWEFLTDVIGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLYI+V+++D++AF +W + ++I ++ DNFW+M TGPCGPCSEIF DQG+ Sbjct: 121 RDRLYISVFEDDDDAFNIWVDDIKMPRERIYKLGEKDNFWAMGSTGPCGPCSEIFIDQGK 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I G P + +R++EIWNLVFMQ+++ + LP IDTGMGLER+A V+Q Sbjct: 181 AIGCGQPSCEVGCDCDRFLEIWNLVFMQYDRDKAGKLTPLPHPCIDTGMGLERLAAVVQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 +T NYD DL +I + ++TG +Y N V+ RV+ DH R+S FLI+DG++P+NEGR Sbjct: 241 RTTNYDTDLMMSIITVAARITGKEYGKQNEVDVSLRVLTDHARASVFLISDGVIPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLR+I+RRA+ + +LL P + + + AYPEL I++ + +E+E Sbjct: 301 GYVLRKIIRRALRHGKLLEQKGPFFHRITSKVIEDFKGAYPELSGNSEFIQKVVINEEES 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL G L+ ++ + KD+ + G+ FKLYDT+G P D++++ GL +D+ Sbjct: 361 FSNTLHYGTQRLEEIIEKVSKDKLCTIPGEEIFKLYDTYGFPTDLVEETAKDAGLT-LDM 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + +A+ EQR++A G G + + T F GY +G Sbjct: 420 EGYTRAMNEQRTKATNSWKGSGEKEVPPFYREFLQSSAPTVFEGYGTTQG---------- 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + AI++ VE A +G ++E + D+TPFY E+GGQ GD+G A Sbjct: 470 -------------QGKILAILKDHAPVESASTGDEIEFLTDKTPFYGESGGQTGDSGRAS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++L + D K G+ VH A + G +R +L L + Q R ++NHSATHLL Sbjct: 517 NENVQLSLDDATKPLPGLIVHKAKIISGTMRNGETLKLEVHPQVRGNTALNHSATHLLQA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H+ Q GS + D LRFD TH P+T E IE VN+ I N+ V T+ M+ Sbjct: 577 ALKEVLGEHIKQAGSLVASDRLRFDYTHFSPLTDKERVRIESRVNEKIRDNIQVATQEMD 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + AI GA AL G KY D VRVV V S LCGGTHV++TG+I L I SE S Sbjct: 637 IDTAIKEGAVALFGEKYGDTVRVVDVLG-----FSKELCGGTHVNATGDIGLFRITSEGS 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEA+TG +A +++ + E L ++ LK + +++++ E+ R+L+ Sbjct: 692 IASGVRRIEAVTGAKAYNNIQAEQESLAAIRVLLKAPSNEEITKLKKLLEKNRQLEKEIT 751 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K ++ KI DV+ + I +D+K L++ +D + +++SGI+++ + Sbjct: 752 TLKEKMVNGQESSGLDEVQKIGDVSVLIKKIEGMDAKTLRTFIDNTKNQLKSGIVVVGSV 811 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K S+ + VT+DL +++A ++ + A V+ GG GGGRP MAQ+GGP K DQA+ Sbjct: 812 A-DGKVSMAVGVTKDLTGKYHAGNIIKSIA-VIVGGSGGGRPDMAQAGGPEIEKLDQALK 869 Query: 891 GVASFLK 897 ++ Sbjct: 870 KAEELIR 876 >gi|326561486|gb|EGE11830.1| alanyl-tRNA synthetase [Moraxella catarrhalis 46P47B1] Length = 893 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 368/922 (39%), Positives = 520/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|39936908|ref|NP_949184.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] gi|48428511|sp|P61706|SYA_RHOPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39650765|emb|CAE29288.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] Length = 889 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 458/899 (50%), Positives = 607/899 (67%), Gaps = 39/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG P E+G+R++E WNLVFMQ++Q K ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG +DI SF Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-INVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WFSL+EK GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ +G+ ++ +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +TD KKA +FVH VE+G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N VVTR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ AG+RRIEA+TG+ AR + K AS L+ + ++ R+ + +E +KL+ Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756 Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ + +L + I + M+ + ++ K+LK ++D +K++ SG+I Sbjct: 757 LSEARKKLAMGGSAAGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875 >gi|21231177|ref|NP_637094.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|24418692|sp|Q8P9X0|SYA_XANCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21112818|gb|AAM41018.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 882 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 385/909 (42%), Positives = 537/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF+LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVALPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMAPTVFLGYEAQDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG V+ A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + +++ D QK A H + G L+ L ID Q R + +NHSATHLLH Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + +V +V + + ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AA-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 QGVPSWVKQ 879 >gi|24374938|ref|NP_718981.1| alanyl-tRNA synthetase [Shewanella oneidensis MR-1] gi|38372525|sp|Q8EBS1|SYA_SHEON RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24349653|gb|AAN56425.1|AE015779_2 alanyl-tRNA synthetase [Shewanella oneidensis MR-1] Length = 874 Score = 896 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 379/909 (41%), Positives = 550/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLMLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVAD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------NAKVTALYLNGESVPAINTGDDAVVVLDVTPFYAESGGQVGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + GI + D QK + + G L L +D + R + +NHS THLLH Sbjct: 511 MAQGIEFTVNDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + ELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPFELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ AS LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAASLLKADAHSVVTKLKVQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 VAQEGKVNLIAGVSNDLIAKIKAGELVAMVATQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 + V ++ + Sbjct: 863 SQVLPWITE 871 >gi|90020946|ref|YP_526773.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40] gi|123396361|sp|Q21L68|SYA_SACD2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89950546|gb|ABD80561.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40] Length = 875 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 389/911 (42%), Positives = 550/911 (60%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F+ GH + SSSL+P NDPTL+FTN+GMV FK++F GQ+ Y Sbjct: 1 MKSAEIREAFLQYFESKGHSRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDNRSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAINYAWEFLTSKEWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + +L +TVY +D+EA+ +W G+ D+IIRI N DNFW+M +TGPCGPC Sbjct: 121 IPTEKLCVTVYADDDEAYGIWANDVGVPEDRIIRIGDNKGGRYNSDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG P E+G+R+IEIWN+VFMQF + E LPK S+DTGMGLE Sbjct: 181 TEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNVVFMQFNRSVDGEMAPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A V+Q +NY+IDLF+ L++A+ Q T + + + RVI DH+RS +FL++DG+L Sbjct: 241 RIAAVMQHVHSNYEIDLFQALLEAAAQATQAED--KDAKSLRVIADHIRSCAFLVSDGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T+P L+ AL +MG AYPEL++ + IE+ L Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGQTKPFFHTLVAALVEQMGEAYPELVRDQASIEKVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +E+++F KTL++G+V+L+ LS L I+ G+V F LYDT+G P+D+ DI R L Sbjct: 359 AAEEDQFAKTLEKGMVVLESALSELK-GTIIPGEVIFTLYDTYGFPVDLTNDIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D+ ++ +E+Q+ RAR SG+ + + + G T F+GY L G Sbjct: 418 -LDMDGYDALMEQQKKRARE------SGSFKVDYSATATIEGHTNFVGYSELTGD----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V AI+ GE V+ GQ +V D TPFY E+GGQ GDT Sbjct: 466 ------------------ASVTAILVDGENVDTLTEGQSGVIVLDTTPFYGESGGQAGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG + ++ D QK +H + G ++ +D R+ ++NHSATH Sbjct: 508 GYIVFDGAKFEVQDCQKSGAN-HLHVGQLLAGAVKVGDKAQPVVDSAVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + + LRFD +H + + ELK IE VN+ I N PV T Sbjct: 567 LLHAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVKPEELKQIESMVNEQIRLNSPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A GA AL G KY D VRV+S+ GG S LCGGTHVS TG+I L+ I Sbjct: 627 ELCDMEAAQQKGAMALFGEKYGDEVRVLSM----GGAFSVELCGGTHVSRTGDIGLIRIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEA+TG++A S + + L + A LK S N++ +VE++ + R+L+ Sbjct: 683 SESGIASGVRRIEAVTGEKALSVIDASADTLNAAAKLLKASPENLLDKVEQLIAQNRQLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L IA V ++ + VD+K L+ +MD L+ K+ + ++ Sbjct: 743 KSLAAAKSKLASSSADEWLSEATDIAGVKVLAKAVEGVDAKSLRDMMDKLKNKLGTSAVI 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ V++D + A D+ + A ++GG G GGRP MAQ GG + Sbjct: 803 LASV-NDDKISLVAGVSQDATSKIKAGDMVKHVAGLIGGKG-GGRPDMAQGGGTDVEALP 860 Query: 887 QAIAGVASFLK 897 AI V + K Sbjct: 861 AAIGSVLDWAK 871 >gi|326577502|gb|EGE27382.1| alanyl-tRNA synthetase [Moraxella catarrhalis O35E] Length = 893 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 369/922 (40%), Positives = 521/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + ++L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEAITG A +++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAITGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKTLRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|206578751|ref|YP_002236967.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342] gi|206567809|gb|ACI09585.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342] Length = 875 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +VTG + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H V G L+ ++ +D R+++ +NHSATH Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I V + ++ V+ K L++++D L+ ++ S +++ Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|163852018|ref|YP_001640061.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1] gi|205830139|sp|A9W5Y4|SYA_METEP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163663623|gb|ABY30990.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1] Length = 891 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 447/896 (49%), Positives = 585/896 (65%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++ A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A + ++ + S +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL R++AV+L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTGRYDAVELVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|163746280|ref|ZP_02153638.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45] gi|161380165|gb|EDQ04576.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45] Length = 885 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 439/892 (49%), Positives = 563/892 (63%), Gaps = 39/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F GH+++PSS L+P NDPTLMFT +GMV FKN+FTG E Y Sbjct: 1 MKTLNEIRSTFLNYFDAQGHQVVPSSPLVPRNDPTLMFTAAGMVQFKNLFTGVETRNYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AWDLLTKEF + Sbjct: 61 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWDLLTKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +TVY DEEA K+WK +GL ++IIRI T+DNFWS TGPCGPC+EIF+D G Sbjct: 121 DPNRLLVTVYHTDEEAVKIWKAHTGLPDERIIRIATDDNFWSAGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTREPLPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS + +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 TNDNYATDLMRSLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P+L +MG+AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGVKDPLMHQLVPSLVQQMGAAYPELGQAQSLIRETLLLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L + L G+ AFKLYDT G PLD+ QD L +G +D FN Sbjct: 361 QTLDRGLKLLDDELHGLPEGATLPGEAAFKLYDTFGFPLDLTQDALREKGR-AVDTDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++ARA G G +WF + +K G T+F+GYD Sbjct: 420 TAMEAQKAKARAAWAGSGEAADATVWFDVADKSGVTEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+VQ + VE A +G V+V +QTPFYAE+GGQ+GDTG Sbjct: 462 -----TESAEGQIVALVQGSDKVEAASAGSDVQVALNQTPFYAESGGQVGDTGVIRTQTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K+ G+FVH V G ++ S VL +D R + NHSATHLLH AL Sbjct: 517 IVNVTDT-RKSAGVFVHFGHVIEGEVKPGQSAVLEVDRARRSAIRANHSATHLLHEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HVSQ GS D LRFD +H+K +T EL +E VND + QN PV TRIM +DA Sbjct: 576 ALGDHVSQRGSLNAHDRLRFDFSHAKGLTPEELTQVEREVNDYVRQNTPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + +S LCGGTHV TG+I ++ Sbjct: 636 RAMGAQALFGEKYGDEVRVVSMGQLEGSGKGSNKSTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ +G+RRIEA+TG A + L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSASSSGVRRIEALTGTEALAWLRDQEAALSRVAAELKTSTADVPDRVRALLDERRSLSN 755 Query: 773 IHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ + +L ++ V F+ ++S V K+L ++D + KI SG ++L Sbjct: 756 EVAQLRRELAMSGGSAAAPEAREVNGVKFVGQVLSGVTGKDLPGLVDEHKAKIGSGAVLL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + KA+V VT+DL DR +AVD+ + + LGG GGGGRP MAQ GG Sbjct: 816 IA-DTGGKAAVAGGVTKDLTDRLSAVDMVKAAVAELGGKGGGGRPDMAQGGG 866 >gi|261854984|ref|YP_003262267.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2] gi|261835453|gb|ACX95220.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2] Length = 872 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 390/909 (42%), Positives = 539/909 (59%), Gaps = 52/909 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +RT FLEFF + GHE++PSSSLIP +DPTL+FTN+GMV FK+ F G E Sbjct: 2 MKTTAELRTAFLEFFNQRGHEIVPSSSLIPAHDPTLLFTNAGMVQFKDAFLGLEHRANPR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ WD LT+ L Sbjct: 62 AVSCQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPEAIRYGWDFLTQVLKL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ +W+ GL +K++RI DNFW M +TGPCGPC+EI Sbjct: 122 PADRLLVTVYQTDDEAYAIWRDEIGLPEEKVLRIGDKPSGGSDNFWQMGDTGPCGPCTEI 181 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G IPGG PGS E+G+R+IEIWN+VFMQ+++ + LPK S+DTGMG+ER+A Sbjct: 182 FYDHGAHIPGGPPGSADEDGDRFIEIWNIVFMQYDRTVDGQLHPLPKPSVDTGMGIERLA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NYDID+F+HLI A++ VTG + +V+ DH+RS +FLI DG+ P N Sbjct: 242 AILQGGHSNYDIDIFRHLITAAQAVTGAAD--QKSSSLKVLADHIRSCAFLIVDGVRPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGR YVLRRI+RRA + LG EP L+ L MG AY EL A+ + LR E Sbjct: 300 EGRDYVLRRIIRRAARHGHKLGVDEPFFYRLVAPLVEVMGPAYSELANAQAEVARVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +L+ L+ + + G+V FKLYDTHG P D+ DI RGL +D Sbjct: 360 EERFLQTLASGMQVLETELADMTPGGTIPGEVVFKLYDTHGFPFDLTADIARERGL-VLD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ E+R+++RA S + E T F GY Sbjct: 419 ESGFEHAMAERRAQSRAASQFAQQTH-------VLEIETPTCFEGY-------------- 457 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + AIV GE ++ +GQ +V D TPFYAE+GGQ+GDTG Sbjct: 458 ---------AQDKAQGALIAIVHDGEQIDVLEAGQSGALVLDHTPFYAESGGQVGDTGVI 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R +TD QK+ F+H V G + ID + R + +NHSATHLLH Sbjct: 509 TTAGGRFVVTDTQKQGAN-FLHLGEVIEGRVALGDVADAQIDVERRHSIRLNHSATHLLH 567 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + + LRFD + S+PIT A+L+ IE VN I +N V TR M Sbjct: 568 AALRQVLGTHVHQKGSRVGAESLRFDFSQSEPITDAQLREIERIVNAQIRENHSVETREM 627 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A A+GA AL G KY D VRVV++ G S LCGGTH G+I L+ IVSES Sbjct: 628 PVDEARAAGAMALFGEKYGDVVRVVTM-----GPFSMELCGGTHARRGGDIGLIKIVSES 682 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TG A + L D+ L +AS ++ S+ + V RV ++ E R+L+ Sbjct: 683 GVASGVRRIEAVTGASALAVLEQTDDALAEIASMVRGSRQDAVSRVSQVIERARQLEREL 742 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K + E + + DVN++ + + D L+ +D L+ K+ + +ML Sbjct: 743 AEIKAKQAAEAGGDLLTTAVAMGDVNYLVAELPDADVNTLRDTVDQLKNKLGTSAVMLAS 802 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + ++ K ++ V++DL R A D ++A+++ GG GGGRP MAQ+GGP+ + A+ Sbjct: 803 V-EDGKVRLIAGVSKDLTGRIKAGDWVNVAAQIV-GGKGGGRPDMAQAGGPDSAQLPAAM 860 Query: 890 AGVASFLKK 898 +++KK Sbjct: 861 EAARAWMKK 869 >gi|326569365|gb|EGE19425.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC8] Length = 893 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 369/922 (40%), Positives = 520/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIVSEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|153835573|ref|ZP_01988240.1| alanyl-tRNA synthetase [Vibrio harveyi HY01] gi|148867838|gb|EDL67069.1| alanyl-tRNA synthetase [Vibrio harveyi HY01] Length = 860 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 537/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 SS V A+ +G VE +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ----------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 EIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + DGLRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I S Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q K + ++ E ++ + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDAIEAQTAKYEE--------------KLAESAQKAKSLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + I + + D+K L++++D ++ ++ SG+I+L Sbjct: 730 EIQKLKDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 790 ANV-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPA 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIQTVQPWLEE 858 >gi|146278407|ref|YP_001168566.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025] gi|205830189|sp|A4WV47|SYA_RHOS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145556648|gb|ABP71261.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025] Length = 883 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 446/889 (50%), Positives = 579/889 (65%), Gaps = 37/889 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT++FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELLTRDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WKK++GL D+IIRI TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 PREKLLVTVYHTDDEAASIWKKVAGLPDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGTGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LL+ L L + L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLDRGLRLLEDELDRLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E++GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAERHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV G A GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEKAEGQILAIVAGGVDTASATPGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV +K +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-RKGQGLFLHFAEVTEGEIRPGQGAALEVDHARRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HSK +++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSKALSAEELATVEAEVNQFIRSNGMVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ DG +S LCGGTHV+ G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGMDGQTYSLELCGGTHVARLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG+ A +HL Q ++L +A+ LK S +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALAHLNEQMQRLAEVAATLKASPAEMVDRVKALVEERRQLQN 755 Query: 773 IHAKRK---LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ + I V F++ I+ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAAAEAKDIGGVKFLAQIVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 KA++ VT DL DR +AV L + +A+ LGG GGGGRP MAQ+G Sbjct: 816 -DTAGKAALAAGVTPDLTDRLSAVALVKAAAEALGGRGGGGRPDMAQAG 863 >gi|170743900|ref|YP_001772555.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46] gi|205830146|sp|B0UGC4|SYA_METS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|168198174|gb|ACA20121.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46] Length = 886 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 446/892 (50%), Positives = 604/892 (67%), Gaps = 35/892 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFAKHGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW+L+TKEF L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY +D++A LW+KI+G ++IIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 DRSKLLVTVYADDDDAATLWRKIAGFPEERIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PELWGGPPGSPEEDGDRFLEFWNLVFMQYEQIEPGNRVGLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A G EG ++RVI DHLR++SFL+ADG+LP NEGRGY Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRPPEGAQTASYRVIADHLRAASFLVADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +P+M L+P L EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELVRAESLISETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +LD L + + L+G+ AF LYDT+G PLD+ QD L +RG G+D +F Sbjct: 361 RTLERGLSILDAETRDLSEGQNLSGETAFTLYDTYGFPLDLTQDALKSRG-IGVDTDAFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G TE +W++L+E+ GAT+F+GY+ Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWYALRERVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +V A+V+ G VE SG++ +V QTPFY E+GGQ+GDTG G+ Sbjct: 462 -----AETAEGVVTALVRGGVEVEALASGEEGLLVVSQTPFYGESGGQVGDTGTVAAAGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD +KK +FVHH VE G L ++ L +D+ R + +HSATHLLH AL Sbjct: 517 RARVTDTEKKLGDLFVHHVAVEEGRLTVGQAVELRVDHARRAAIRAHHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD +H KP+ E+ ++E+ N ++ QN PVVT++M +DA Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEEMANRVLLQNGPVVTKLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA+GA AL G KY D VRVVS+ + GG S LCGGTHV TGEI L+ +V E Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEDQGGDGRRRTFSVELCGGTHVGRTGEIGLITVVGEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ +G+RRIEA+TG AR HL + +L ++A LKV R+ + E+ R+L+ Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAVAGLLKVPPAEAADRLAALIEDRRRLEREL 756 Query: 775 AKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ + +L + + ++A V M+ + V+ ++LKS+ D +K++ SG++ +VG Sbjct: 757 SEARRKLAMGGGGAGEEPVREVAGVKLMARSVEGVEMRDLKSLADEGKKRLGSGVVAIVG 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + KA +++ VT+DL DRF+AV L R ++ LGG GGGGR MAQ+GGP+ Sbjct: 817 VAPDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPD 868 >gi|148978178|ref|ZP_01814708.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3] gi|145962600|gb|EDK27876.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3] Length = 860 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 375/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ + + YE + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAE--TIGYEDLSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E QR RAR G + + + T+F GY G+ Sbjct: 419 IDEAGFEKAMEVQRQRAREA------GQFGTDYNATIKVETNTEFCGYTGTEGA------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ +GE V +G K ++ ++TPFYAE+GGQ GDTG Sbjct: 467 -----------------GEISALFVEGEEVASLSAGDKAIIILEETPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + T+D + R +S+NHSATHL Sbjct: 510 TLKTASGLFKVEDTQKLGN-AFAHHGELVEGVFAKGDKVEATVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHAALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q + ++ E ++ + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKALEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ + +I+ + I D+K L++++D + ++ SGII L Sbjct: 730 EIQLLKEKMAAAESANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 789 IANVADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQI-GGKGGGRPDMAQAGGTDVEALPE 847 Query: 888 AIAGVASFLKK 898 A+ V ++L++ Sbjct: 848 ALKSVRTWLEE 858 >gi|118581577|ref|YP_902827.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379] gi|205830173|sp|A1ATU9|SYA_PELPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118504287|gb|ABL00770.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379] Length = 878 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 379/892 (42%), Positives = 538/892 (60%), Gaps = 42/892 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF + GH ++PSS +IP NDPTLMF N+GM FK+ F G EK Y Sbjct: 1 MTGSEIRRRFLTFFAERGHTIVPSSGIIPKNDPTLMFANAGMNQFKDCFLGMEKRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT++ LD Sbjct: 61 CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTRDLKLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY++VY +D+EA +W + G+ ++I R DNFWSM +TGPCGPCSEIF+DQGE Sbjct: 121 KNRLYVSVYTDDQEAADIWHQQEGVPLERIFRFGEKDNFWSMGDTGPCGPCSEIFYDQGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWN VFMQF++ LPK S+DTGMGLER++ V+Q Sbjct: 181 AAGCGSPDCTVGCDCDRYMEIWNNVFMQFDRSTDGVLTPLPKPSVDTGMGLERISAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 T+NYD DL + +I+ E+++G Y + + V+ RVI DH R+ +FLI DG LP+NEGR Sbjct: 241 VTSNYDTDLIQGIIRHVERLSGKTYGKDERDDVSMRVIADHARAVTFLICDGALPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG +P++ H++ A+ MG+AYPEL++ + I++ + +E++R Sbjct: 301 GYVLRRIMRRAARHAKMLGLADPMLCHMVDAVRDMMGAAYPELVEREEYIKKVILAEEQR 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ ++ + ++ GDV F+LYDT+G P+D+ DI+ + G ID Sbjct: 361 FAETLDRGLAMLNDEVARMRAAGSTVIPGDVLFRLYDTYGFPIDLTADIVESEGFT-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F Q +E QR +AR H G G+ +++ L + +F+GYD L Sbjct: 420 AGFEQCMERQREQAREHWKGSGAEGIGRVYKELYSRGIRGEFVGYDGLSAL--------- 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V AI++ G VE A +G+ +E+V + TPFY E+GGQ GD G Sbjct: 471 --------------SPVLAIIRDGVEVESATAGETIELVTESTPFYGESGGQKGDCGSIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 L+++ + + VHHA V GI+R L + R + NH+ATHLL Sbjct: 517 TGNSHLEVSGASRPYSDLIVHHATVREGIIRKGDGADLRVSRPERSATARNHTATHLLQA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS ++PD LRFD H +T+ E++ +E VN + N PVV M+ Sbjct: 577 ALRRVLGEHVKQAGSLVSPDRLRFDFIHFTAMTTEEIRRVETLVNGFVMDNQPVVITQMD 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL KY D VRVV G S LCGGTHV +TGEI L I++E+ Sbjct: 637 MASAIEAGATALFDEKYGDNVRVVR-----AGEVSMELCGGTHVRATGEIGLFKIITETG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA TG A S + +++ ++LA LK GN+ R+E++ R++Q Sbjct: 692 IAAGVRRIEAQTGGGALSFVRQMEDEQRALAGLLKAEGGNLPERLEKLLARQREMQREIE 751 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN ++ + ++ + D K L+ + D L+++I G+I+L G Sbjct: 752 SLQGKLNAAASGDLLSGVEEVGGIKLLAAEVRVEDVKALRDLSDTLKERIGQGVIVL-GA 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + KA++L+ VT +L A DL + A ++ GG GGG+P +AQ+GG Sbjct: 811 AIGGKANLLVAVTRELSGTVKAGDLVKKLAPLV-GGSGGGKPELAQAGGSRP 861 >gi|126175316|ref|YP_001051465.1| alanyl-tRNA synthetase [Shewanella baltica OS155] gi|205830201|sp|A3D783|SYA_SHEB5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|125998521|gb|ABN62596.1| alanyl-tRNA synthetase [Shewanella baltica OS155] Length = 874 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 384/909 (42%), Positives = 553/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDTALNELK-GTTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + AI Q GE V +G + VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + G+ + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 511 VASGVEFTVNDTQKYGQATGHQ-GVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 AQVLPWITE 871 >gi|316932874|ref|YP_004107856.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] gi|315600588|gb|ADU43123.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] Length = 890 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 458/900 (50%), Positives = 610/900 (67%), Gaps = 40/900 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWELITRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 NKHQLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG P E+G+R++E WNLVFMQ++Q K ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFDTDLFRSLIDATASALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG +DI SF Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-INVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WFSL+EK+GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKFGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ +G +V +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEGVVMALVKDGTEVDALKAGDAAAIVMNQTPFYAESGGQVGDTGVLAADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +T+ KKA +FVH VE+G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFVVTETLKKAGDLFVHFGTVEQGTIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N VVTR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ + S LCGGTHV TG+I L+ I +E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAAREHGSNALGWSVELCGGTHVKRTGDIGLVSITAE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG+ AR + K+ A+ L+ + ++ R+ + +E +KL+ Sbjct: 697 SAVASGVRRIEALTGRAARHNANAAISTAKTAAAELRTTLDDMPARIAALMDERKKLERE 756 Query: 774 HAKRKLQLN---------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 ++ + +L +I V M+ + ++ K+LK ++D +K+I SG+ Sbjct: 757 LSEARKKLAMGGSASGDGAAASDVREIGGVKLMARTVQGIEIKDLKGLVDQGKKQIGSGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 IALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876 >gi|160876373|ref|YP_001555689.1| alanyl-tRNA synthetase [Shewanella baltica OS195] gi|205830203|sp|A9KYF8|SYA_SHEB9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160861895|gb|ABX50429.1| alanyl-tRNA synthetase [Shewanella baltica OS195] gi|315268563|gb|ADT95416.1| alanyl-tRNA synthetase [Shewanella baltica OS678] Length = 874 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 384/909 (42%), Positives = 554/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +G+ + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGVEFTVNDTQKYGQATGHQ-GVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN I +N + T M Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKATELKEVEELVNTQIRRNHELKTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 AQVLPWITE 871 >gi|304410155|ref|ZP_07391774.1| alanyl-tRNA synthetase [Shewanella baltica OS183] gi|307302134|ref|ZP_07581892.1| alanyl-tRNA synthetase [Shewanella baltica BA175] gi|304351564|gb|EFM15963.1| alanyl-tRNA synthetase [Shewanella baltica OS183] gi|306914172|gb|EFN44593.1| alanyl-tRNA synthetase [Shewanella baltica BA175] Length = 874 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 385/909 (42%), Positives = 554/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + G+ + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 511 VASGVEFTVNDTQKYGQATGHQ-GVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 745 AQLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 AQVLPWITE 871 >gi|326576631|gb|EGE26538.1| alanyl-tRNA synthetase [Moraxella catarrhalis 101P30B1] Length = 893 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 369/922 (40%), Positives = 520/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L I E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLIDWIGE 890 >gi|296112817|ref|YP_003626755.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4] gi|295920511|gb|ADG60862.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4] Length = 893 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 368/922 (39%), Positives = 519/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSGDLLRFDFSYDKPLTEQNINQIETMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEA+TG A ++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKITMTASVGKHLTSKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|296104368|ref|YP_003614514.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058827|gb|ADF63565.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 875 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF LI+A +VTG N + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ A++F GY+ L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFKGYEALE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ V+ D+TPFYAE+GGQ+GD Sbjct: 466 ----------------LTGKVTALFVDGKAVDSISAGQDAVVILDKTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+G + D QK H + G L+ + +D R ++ +NHSATH Sbjct: 510 GELQGNGFSFSVNDTQKYG-QAIGHLGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L IV Sbjct: 629 HIMDLDAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V + R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAQSDQLHDIAQLLKGDTQNLGEKVRVALDRTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|262149022|ref|ZP_06028166.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1] gi|262031167|gb|EEY49787.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1] Length = 873 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 388/899 (43%), Positives = 538/899 (59%), Gaps = 69/899 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ G Y+ + RV+ DH+RS +FLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+EEQR RAR G + SL + T+F GY RG Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK HH ++ +G+L T + +D + R +S+NHSATHL Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+S Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A +L Q +V E+ + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L ++ + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALP 846 >gi|83944501|ref|ZP_00956954.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36] gi|83844703|gb|EAP82587.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36] Length = 886 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 428/896 (47%), Positives = 561/896 (62%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI +W+L+TKE + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLY+TVY D+EA ++WKK++GL D+IIRI T+DNFW M TGPCGPCSEIF+D G Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL ++LI+AS + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L L G+ AFKLYDT+G P+D+ QD L + +D+ FN Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G IWF + EK G T F+GYD Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATIWFDVAEKSGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G V E G V++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K A +F+H V G ++T + VL +D+ R + NHSATHLL+ AL Sbjct: 517 VVTVTDTRKTAG-VFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD +H+ P+T+ +L ++E+ VN I QN V TRIM +DA Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHPMTADQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ D +S LCGGTHV TG+I ++ Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +SS +GIRRIEA+TG A L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755 Query: 773 IHAKRKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + +L + ++ + F++ +++ V K+L +++D + K+ SG ++ Sbjct: 756 EVAQLRRELAMSGGGDASAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L+ + KA+V VT DL +AVD+ + LGG GGGGRP MAQ G + Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKDV 870 >gi|217972432|ref|YP_002357183.1| alanyl-tRNA synthetase [Shewanella baltica OS223] gi|217497567|gb|ACK45760.1| alanyl-tRNA synthetase [Shewanella baltica OS223] Length = 874 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 384/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + AI Q GE V +G + VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +G+ + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGVEFTVNDTQKYGQATGHQ-GVLATGSLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 745 AQLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 AQVLPWITE 871 >gi|323492975|ref|ZP_08098113.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] gi|323312806|gb|EGA65932.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] Length = 860 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 376/911 (41%), Positives = 539/911 (59%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF++W K G+ AD+I+RI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFEIWNKTVGVPADRIVRIGDKEGGKQYESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ + + YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKAAAE--TIGYEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGTAGEELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVARERDF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGYTGTQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S V I +GE E +G K ++ +TPFYAE+GGQ GD G Sbjct: 466 ----------------NSNVAEIFVEGEAAESLSAGDKAIIILGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFKVEDTQKLGN-AIAHHGVLAEGVLAKGDEVEAVVDAERRASISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL T+LG HV+Q GS + P+ LRFD +H + +T AELK +E VN + +N + T Sbjct: 569 LHAALRTVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q K + ++ E + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEE--------------KLAESATKAKSLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + +I V + + DSK L++++D ++ ++ SG++ML Sbjct: 730 EIQKLKDKMAAAESANIMGKAQEINGVKVLIAGMEGADSKNLRTMVDDIKNQMGSGVVML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 790 ANV-NDGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPA 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIQSVQPWLEE 858 >gi|326565354|gb|EGE15532.1| alanyl-tRNA synthetase [Moraxella catarrhalis 12P80B1] Length = 893 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 368/922 (39%), Positives = 520/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L I E K ++ V + L + A ++ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGNIIKHLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890 >gi|269960382|ref|ZP_06174755.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3] gi|269834809|gb|EEZ88895.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3] Length = 860 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 379/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTVTLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W + G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 SS V A+ +G VE +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ----------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 EIRTEAGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q K + ++ E ++ + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEGALDAIEAQAAKYEE--------------KLAESAQKAKSLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + I + + D+K L++++D ++ ++ SG+I+L Sbjct: 730 EIQKLKDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 790 ANV-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPA 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIQSVQPWLEE 858 >gi|325916030|ref|ZP_08178320.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] gi|325537706|gb|EGD09412.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] Length = 882 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 390/909 (42%), Positives = 535/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FFQ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFQGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASGLTGVTD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVLARDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V + E++ G AF+L+DT+G P+D+ DI RGL +D Sbjct: 366 EERFAETLDAGMKIFDDVAAR--SQEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + ++I D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGSDVSIEIVDTQKFAGQFHGHVGRITEGALALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI++ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGEHVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L AS L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLFEAASLLGGNTTEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 ASA-GKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGAALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 DGVPSWVKQ 879 >gi|288933924|ref|YP_003437983.1| alanyl-tRNA synthetase [Klebsiella variicola At-22] gi|290510997|ref|ZP_06550366.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55] gi|288888653|gb|ADC56971.1| alanyl-tRNA synthetase [Klebsiella variicola At-22] gi|289775990|gb|EFD83989.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55] Length = 875 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 392/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +VTG + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ G ++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGVSEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H V G L+ ++ +D R+++ +NHSATH Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I V + ++ V+ K L++++D L+ ++ S +++ Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|261342139|ref|ZP_05969997.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] gi|288315472|gb|EFC54410.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] Length = 875 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 562/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF LI+A +VTG N + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFKGYDALE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ V+ D+TPFYAE+GGQ+GD Sbjct: 466 ----------------LTGNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+G ++D QK H + G L+ + +D R ++ +NHSATH Sbjct: 510 GELKGNGFSFSVSDTQKYG-QAIGHQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+ Sbjct: 629 NIMDLEAAKNKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V + R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEAAIASLHAQSDQLHDIAQLLKGDSQNLGEKVRVALDRTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQAAAQESASLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDSAALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|253997271|ref|YP_003049335.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8] gi|253983950|gb|ACT48808.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8] Length = 878 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 377/907 (41%), Positives = 524/907 (57%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GHE++ SSSL+P DPTL+FTN+GM FK++F G +K Y T Sbjct: 10 SSNEIRQAFLDFFASKGHEIVSSSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+LLT+ F L + Sbjct: 70 SSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKYAWELLTEVFKLPK 129 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY ED+EA+ +W I G+ A++IIRI N DNFW M +TGPCGPC+EI Sbjct: 130 DKLTVTVYAEDDEAYAIWNNIIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEI 189 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G GG P E+G+RYIEIWN VFMQF + LPK S+DTGMGLER++ Sbjct: 190 FYDHGAHHFGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERIS 249 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ NY+IDLF+ LI A+ + K +I + +V+ DH+R+ SFLIADG++ N Sbjct: 250 AVLQHVHANYEIDLFQTLIAAAAR--ETKTADLSIPSLKVLADHIRACSFLIADGVIAGN 307 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++P L EMG AYPEL+ + I E L+ E Sbjct: 308 EGRGYVLRRIIRRAIRHGYKLGVRSAFFHKIVPDLVAEMGDAYPELVSNQARITEILKQE 367 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 ++RF +T++ G+ +L+ L+ ++ NG+ AFKL+DT+G PLD+ DI R +D Sbjct: 368 EDRFFETIENGMAILESELAST--KDVFNGETAFKLHDTYGFPLDLTADICRERN-VAVD 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +FN A+ Q+ +ARA + +L+ AT F GYD L Sbjct: 425 TDAFNAAMARQKEQARAAGKFKMTA-------NLEYDGVATNFHGYDKLE---------- 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ V A+ + G V + G+ VV D TPFYAE+GGQ+GD G Sbjct: 468 -------------TSATVTALYKDGVAVTKLTEGEVGVVVLDNTPFYAESGGQIGDCGEL 514 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + D QK +F HH +++ G L + ++ Q R NHSATHL+H Sbjct: 515 RGTNGIFEAEDTQKIQATVFGHHGVLKTGTLSVGEQVSARVNTQARTNTMRNHSATHLMH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + D RFD H+ P+T E+ +E VN I N R+M Sbjct: 575 KALREVLGEHVQQKGSLVDTDKTRFDFVHTAPMTDDEIAKVEQIVNAEILANAACQARVM 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY D VRV+ + S LCGGTHV+ TG+I L I SES Sbjct: 635 DIESAQNTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVNRTGDIGLFKITSES 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA TG+ A + Q + +LA+ LK + +V ++ + + L+ Sbjct: 689 GVAAGVRRVEATTGEGALKLINAQQTLISALANDLKAPVNELASKVAQLSDHAKSLEKEL 748 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L +IA V ++ + D+ L+ MD L+ K++S I+L Sbjct: 749 ARLKSKLASSQGDDLATQAVEIAGVKVLAATLDGADANALRETMDKLKDKLKSAAIVLAS 808 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +S + K S+ VT DL + A +L A +GG G GG+P MA +GG + ++ QA+ Sbjct: 809 VS-DGKVSLAAGVTADLTSKVKAGELVNFVAGQVGGKG-GGKPDMAMAGGSDASQLPQAL 866 Query: 890 AGVASFL 896 A V ++ Sbjct: 867 ASVNDWV 873 >gi|238896148|ref|YP_002920884.1| alanyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238548466|dbj|BAH64817.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 875 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +VTG + RVI DH+RS +FL+ADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H V G L+ ++ +D R+++ +NHSATH Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I V + ++ V+ K L++++D L+ ++ S I++ Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|156975767|ref|YP_001446674.1| alanyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116] gi|205830285|sp|A7MYT5|SYA_VIBHB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|156527361|gb|ABU72447.1| hypothetical protein VIBHAR_03511 [Vibrio harveyi ATCC BAA-1116] Length = 865 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 382/915 (41%), Positives = 537/915 (58%), Gaps = 72/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+E FG+TL+RG+ +L+ L ++ ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARER 420 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 421 EF-AIDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG--- 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 SS V A+ +G VE +G K +V +TPFYAE+GGQ Sbjct: 471 --------------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQC 510 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + ++ D QK HH ++ G+L + +D + R +S+NHS Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHS 569 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + DGLRFD +H + +T+AELK +E VN I +N Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHV 629 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SE I AGIRRIEA+TG+ A + Q K + ++ E ++ + Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQAAKYEE--------------KLAESAQKAK 730 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ K K ++ + I + + D+K L++++D ++ ++ SG Sbjct: 731 SLEKEIQKLKDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSG 790 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 791 VILLANV-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVA 848 Query: 884 KADQAIAGVASFLKK 898 AI V +L++ Sbjct: 849 ALPAAIQTVQPWLEE 863 >gi|326575283|gb|EGE25211.1| alanyl-tRNA synthetase [Moraxella catarrhalis CO72] Length = 893 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 368/922 (39%), Positives = 519/922 (56%), Gaps = 56/922 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 L + RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPC Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180 Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EIF+D GE I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGM Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286 GLER++ ++Q NY+ D+F L+ + + + N + +V+ DH+RS +FLI Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ + E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ ID F ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V + Q G+ V+ G + ++ D+TPFYAE+GG Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+G+ G + + D QK + I H +V+ G + S + Q R + N Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704 P I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+ Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I AG+RRIEA+TG A ++ D++L LA+ K + + RV ++ Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R L+ + + + I + ++ +D+K L+++ D ++ K Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809 Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G + + + G+ ++ + Sbjct: 869 GGATDVANLPKLMTGLIDWIGE 890 >gi|329999040|ref|ZP_08303295.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3] gi|328538480|gb|EGF64595.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3] Length = 875 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +VTG + RVI DH+RS +FL+ADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H V G L+ ++ +D R+++ +NHSATH Sbjct: 510 GELKGVGFSFAVSDTQKYG-QAIGHIGKVASGTLKVGDAVQADVDEARRQRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I V + ++ V+ K L++++D L+ ++ S I++ Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|188581873|ref|YP_001925318.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001] gi|205830142|sp|B1ZC90|SYA_METPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|179345371|gb|ACB80783.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001] Length = 891 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 445/897 (49%), Positives = 585/897 (65%), Gaps = 40/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY +D+EA LWKKI+G DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PALAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL++++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGRAFPELVRSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG G+D +F+ Sbjct: 361 KTLERGLAILDAESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTQAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ARA G G TE +WF +KE+ GAT+F+GY+ Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++V A++++G VE +G VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TETAEAVVGALLREGGEVETLKAGDSGIVVVNQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T+ +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTNTEKKLGDLFVHHVTVEEGTLSLGAAVELKVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELTRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGWEVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VIGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A + ++ + S ++ V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREVNGVRLMARVVEGVEMRDLKGLADEGKSRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + +VG+S + KA +++ VTEDL R++AV L R A LGG GGGGR MAQ+GGP+ Sbjct: 817 VAIVGVSADGKAGLVVGVTEDLTGRYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGPD 873 >gi|262043942|ref|ZP_06017027.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038706|gb|EEW39892.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 875 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGNMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +VTG + RVI DH+RS +FL+ADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H V G L+ ++ +D R+++ +NHSATH Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I V + ++ V+ K L++++D L+ ++ S I++ Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|83594150|ref|YP_427902.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] gi|123525949|sp|Q2RQI0|SYA_RHORT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83577064|gb|ABC23615.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] Length = 883 Score = 894 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 433/891 (48%), Positives = 586/891 (65%), Gaps = 35/891 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS S IR TFL+FF KNGH+ + SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSTTSEIRRTFLDFFVKNGHQEVASSPLVPLNDPTLMFTNAGMVQFKNVFTGAETRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW L+T+E+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDFAWRLITEEYAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ DE+A LW+K++GL ++IIRI TNDNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVHTSDEDAAGLWRKVAGLPDERIIRIPTNDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS++E +R+IEIWNLVFMQFEQ +R LP+ SIDTGMGLER+A VLQ Sbjct: 181 PKVAGGPPGSADENGDRFIEIWNLVFMQFEQLTVDQRVALPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDL + LI+A G +G + V+HRVI DHLRS+ FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLMRALIEAIASAAGTDPDGPHKVSHRVIADHLRSACFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G +PLM L+PAL EM +PEL +A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHMMGCVDPLMFKLVPALNREMADQFPELNRANALITETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 + LDRGL LL L + L G VAFKLYDT+G PLD+ QD L RG G+D F+ Sbjct: 361 QMLDRGLKLLAEETGDLASGDSLPGPVAFKLYDTYGFPLDLTQDALRPRG-IGVDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR AR G G TE +WF ++++ GA++F+GY Sbjct: 420 AAMARQREDARKSWTGSGDHATEAVWFDIRDRVGASEFLGYTSTD--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 + A+V G++VE A + +V V+ +QTPFY E+GGQ+GD G + +G Sbjct: 465 --------AEGAIVALVVDGKVVESAPADTEVAVIANQTPFYGESGGQMGDAGEIRLAEG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ + D KK + VH VE +R + +D + R L +HSATHLLH AL Sbjct: 517 GKVVVRDTAKKLGALHVHIGRVEGATIRVGQAARFVVDTERRDALRSHHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + PD LRFD++H KP+++AE++ +ED+VN I N + T+IM+ + Sbjct: 577 RRLGEHVTQKGSLVAPDRLRFDISHPKPLSAAEIRVVEDDVNREIRANAEITTQIMDPDS 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL G KY + VRVVS+ + G S LCGGTH TG+I I+ E + Sbjct: 637 AIEAGAMALFGEKYGEEVRVVSMGRREPGANRPFSVELCGGTHARRTGDIGFFKIIGEGA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TGQ A H+ QD+ + A LKV+ ++ GR++ + ++ R+L+ A Sbjct: 697 VASGVRRIEAVTGQAAFEHIEAQDDLVSGAAQLLKVTPADLPGRIQALLDDRRRLERDLA 756 Query: 776 KRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L + +I V ++ ++ +V +K+LK ++D ++K++ SG++ L+ + Sbjct: 757 DARRKLATGGGGAAAPAVVEINGVKWVGRLLEDVPAKDLKGMVDEVKKQLGSGVVALIAV 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + KAS+++ VTEDL+ RF+AV L R A +GG GGGGRP MAQ+GGP+ Sbjct: 817 A-DGKASLVVGVTEDLVGRFDAVALVRAGAGAIGGKGGGGRPDMAQAGGPD 866 >gi|319427213|gb|ADV55287.1| alanyl-tRNA synthetase [Shewanella putrefaciens 200] Length = 874 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 380/909 (41%), Positives = 553/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWSFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALSELT-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + +V D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGIEFTVNDTQKYGQATGHQ-GVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + +N + + V++ L+ + D L++K++S II+L G Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGINVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 AQVLPWITE 871 >gi|152971551|ref|YP_001336660.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|205830073|sp|A6TCV9|SYA_KLEP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150956400|gb|ABR78430.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 875 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 393/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT F Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI + +VTG + RVI DH+RS +FL+ADG++ Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ GA++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++D QK H V G L+ ++ +D R ++ +NHSATH Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRHRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ +I V + ++ V+ K L++++D L+ ++ S I++ Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + + Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVKGWV 871 >gi|59711143|ref|YP_203919.1| alanyl-tRNA synthetase [Vibrio fischeri ES114] gi|71657966|sp|Q5E7G5|SYA_VIBF1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|59479244|gb|AAW85031.1| alanyl-tRNA synthetase [Vibrio fischeri ES114] Length = 859 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 374/905 (41%), Positives = 533/905 (58%), Gaps = 58/905 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 ADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+ + +V G Y+ + + RV+ DH+RS S+LI DG++P+ Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ L+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L +L+G+ FKLYDT+G P D+ D+ R L I Sbjct: 361 EEENFGRTLERGMAILNEALDNLE-GTVLDGETVFKLYDTYGFPADLTNDVARERELT-I 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR G + ++ + T F GYD Sbjct: 419 DEDGFEKAMEEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDSTE--------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V A+ ++GE V+ +G ++ DQTPFYAE+GGQ GD G Sbjct: 464 --------------AKASVVALFREGEEVDALSAGDDAILILDQTPFYAESGGQCGDAGI 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + +TD K HH + G+L + +D R + +NHSATHLL Sbjct: 510 ITVETGKFVVTDTHKIGN-AIGHHGKLVEGVLSKADHAMAQVDETRRAAIILNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + + + EL+ +E VN I N + T + Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG+ A + Q + + +++ +E ++L+ Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADK-------KLNEAASKAKQLEKEIQQLKDK 736 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A ++ + +IA + + ++K L+ ++D L+ +I SGIIML +S E Sbjct: 737 LASQESASLIN--KVQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIMLGNVS-E 793 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++ VT+DL+ + A +L + A+ + GG GGGRP MAQ+GG + A+A V Sbjct: 794 GKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNALASVE 852 Query: 894 SFLKK 898 ++L + Sbjct: 853 AWLTE 857 >gi|240139285|ref|YP_002963760.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1] gi|240009257|gb|ACS40483.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1] Length = 891 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 448/896 (50%), Positives = 584/896 (65%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++V A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVVGALLRDGSEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTGTDKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A + ++ + S +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL +R++AV L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|295097277|emb|CBK86367.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 875 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 395/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF LI+A +VTG + + RVI DH+RS +FLIADG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDDELAKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+EEQR RAR S + ++ A++F GY+ L Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFKGYEEL-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V A+ G+ V+ +GQ+ V+ D+TPFYAE+GGQ+GD Sbjct: 465 ---------------ALTSNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+G ++D QK H + G L+ + +D R ++ +NHSATH Sbjct: 510 GELKGNGFSFSVSDTQKYG-QAIGHQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ E A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L IV Sbjct: 629 HIMDLEAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V + R+L+ Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAQSDQLHEIAQLLKGDSQNLGEKVRVALDRTRQLE 743 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ I V + ++ V+ K L++++D L+ ++ S +I+ Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861 Query: 887 QAIAGVASFL 896 A+A V S++ Sbjct: 862 AALASVESWV 871 >gi|254507377|ref|ZP_05119512.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16] gi|219549633|gb|EED26623.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16] Length = 860 Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats. Identities = 377/911 (41%), Positives = 537/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW+M +TGPCGPC+ Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G + + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKAAAEVVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGYTGTQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V I +GE+ E +G K ++ +TPFYAE+GGQ GD G Sbjct: 466 ----------------KSNVAEIFVEGEVAESLSAGDKAIIILGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFKVEDTQKLGN-AIAHHGVLAEGVLAKGDEVEAIVDAERRASISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H + +T ELK +E VN + +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKPENLRFDFSHLEAVTPTELKEVERLVNAQVRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q K + ++ E ++ + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEEQQAKYEE--------------KLVESAQKAKSLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + +I + + D+K L++++D ++ ++ SG+I+L Sbjct: 730 EIQKLKDKMAAAESANIMGKVQEINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I+ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 790 ANINGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPE 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIKTVQPWLEE 858 >gi|254561741|ref|YP_003068836.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4] gi|254269019|emb|CAX24980.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4] Length = 891 Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats. Identities = 447/896 (49%), Positives = 585/896 (65%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEASTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++ A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A + ++ + S +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL +R++AV L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|153001637|ref|YP_001367318.1| alanyl-tRNA synthetase [Shewanella baltica OS185] gi|205830202|sp|A6WR16|SYA_SHEB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151366255|gb|ABS09255.1| alanyl-tRNA synthetase [Shewanella baltica OS185] Length = 874 Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats. Identities = 384/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P+L MG A L + ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDTALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFTGYTELAG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI GE V +G + VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYLNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGIEFTVNDTQKYGQATGHQ-GVLATGSLSVGQVIEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 TTQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 AQVLPWITE 871 >gi|326794049|ref|YP_004311869.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1] gi|326544813|gb|ADZ90033.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1] Length = 871 Score = 892 bits (2306), Expect = 0.0, Method: Composition-based stats. Identities = 383/910 (42%), Positives = 540/910 (59%), Gaps = 54/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R +FL +F+ H+++ SSSLIP NDPTL+FTN+GMV FK++F G +K Y Sbjct: 1 MKSSELRQSFLSYFESKQHQVVESSSLIPGNDPTLLFTNAGMVQFKDVFLGTDKRNYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTK L Sbjct: 61 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIGYAWEFLTKVAKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 Q +L +TVY ED+EAF +W K GL +KIIRI N DNFW M +TGPCGPC+E Sbjct: 121 QEKLLVTVYAEDDEAFDIWHKEIGLPKEKIIRIGDNKGARYASDNFWQMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +F+D GE I GG PGS E+G+R+IEIWN+VFMQF + + LPK S+DTGMGLER+ Sbjct: 181 VFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSANGDMAPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+IDLF++LI+AS G + RVI DH+RS SF+I DG++P+ Sbjct: 241 AAILQGVHSNYEIDLFQNLIKASANAVGTND--LESQSLRVIADHIRSCSFMIVDGVVPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ AL +EMG AYPEL + K + L Sbjct: 299 NEGRGYVLRRIIRRAIRHGNKLGQKGVFFHTLVEALDSEMGEAYPELRKLKERVASILLK 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD+G+ +L+ +S LG +++ G+ FKLYDT+G P D+ D+ I Sbjct: 359 EEEQFAKTLDQGMRILEEAISELGDSKVIPGETVFKLYDTYGFPADLTNDVARE-NELEI 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+EEQR+RAR+ S + + S T+F GY L G Sbjct: 418 DEAGFEAAMEEQRARARSASNFSMDMSGDVSIDS------ETEFTGYTELEGDC------ 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +V+A++ G V+E +GQ V+ TPFY E+GGQ GD G Sbjct: 466 -----------------VVEALIVDGSNVDEIQAGQDAVVLLKSTPFYGESGGQAGDQGW 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G G K +H +++ G ++ ++ +D R ++NHSATHL+ Sbjct: 509 LRGPGA--FKVSNTAKQGKAHLHQGVLKEGAIKVGDTVAAQVDRSMRNATALNHSATHLV 566 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL I+G HV+Q GS + + LRFD +H + +T+AE++ +ED VN+ I N V+T I Sbjct: 567 HEALRRIVGDHVNQKGSLVNAERLRFDFSHFEGLTNAEIEQVEDMVNEQIRLNHEVITEI 626 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A GA AL G KY+ VRV+++ G +S LCGGTHV TG+I L IV+E Sbjct: 627 MDVDSAKEKGAMALFGEKYDSEVRVLTM----GADYSIELCGGTHVKRTGDIGLFKIVTE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA+TG+ A + + L +A+ +K ++ N + +V + ++ R LQ Sbjct: 683 GGIAAGVRRIEAVTGKAAIDAVRQTENALNGVAAVVKGNKENALEKVSALNDQARALQKE 742 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L S I + + D K L+ ++D L+ K++S +I+L Sbjct: 743 IDALKSKLAAAAGSDLAGQAIDIEGGKLLVAQVES-DPKALRDLLDQLKSKLESAVILLA 801 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT++L + A DL ++ A ++ G GGGRP MAQ+GG N A Sbjct: 802 AV-NDGKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGKGGGRPDMAQAGGNNPAALPDA 859 Query: 889 IAGVASFLKK 898 + V +++K+ Sbjct: 860 LEQVPAWVKE 869 >gi|21242491|ref|NP_642073.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] gi|24418694|sp|Q8PLQ0|SYA_XANAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21107940|gb|AAM36609.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] Length = 882 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDVIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLIGKAGSLTGVAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALSAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V AI++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSVEVADTQKFAGQFHGHVGRISEGALALGDVLAGEIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|262372182|ref|ZP_06065461.1| alanyl-tRNA synthetase [Acinetobacter junii SH205] gi|262312207|gb|EEY93292.1| alanyl-tRNA synthetase [Acinetobacter junii SH205] Length = 884 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 530/913 (58%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 8 MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AWD LT + Sbjct: 68 VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWDFLTNEQWLA 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY+TVY D+EAF +W K GL A +IIRI N DNFW+M +TGPCGPC Sbjct: 128 LPKDRLYVTVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 188 SEIFYDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 248 RISAVLQHVNSNYEIDLFQHLLKAAANIIGIQDEG--QPSLRVLADHARSCCFLIADGVN 305 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL Sbjct: 306 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLVEVMGEAYPELASRKDVIEATL 365 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+ L+ L D ++ G FKLYDT+G P D+ DI RG Sbjct: 366 LREEEQFAKTLEQGLKLLEAELAQLK-DTVIPGATVFKLYDTYGFPTDLTADIARERGFT 424 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + S+ + G TQF GYD +G Sbjct: 425 -IDETGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATQG------ 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 472 -----------------QGQIVAIYKDGTQVDEINEGDEALIVLNQTPFYAESGGQIGDT 514 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D ++ D +K FVH IV G L+ ++ T+ R + NHSATH Sbjct: 515 GIFKNDTGIFEVQDTKKSGG-AFVHQGIVTMGSLKATQNVEATVKADIRAATARNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HV Q GS + D LRFD + +P+T +L+ IE VN + N PV T Sbjct: 574 LLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLVNAEVIANTPVTT 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY + VRV+S+ + S LCGG HV TG+I L I Sbjct: 634 ELLDIESAKAKGAMMLFGEKYGEEVRVLSMGSIIEEKNFSIELCGGIHVKRTGDIGLFKI 693 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++++ LK + V +VE I E L Sbjct: 694 TSEGGVAAGVRRIEAVTGTKALEAVQKADSDIQTINGLLKAQKDQTVEKVEAIVETASSL 753 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + +IA + + +D+K L+++ D+++ K++ +I Sbjct: 754 QKQIEQLNQKLASFQAADLLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAVI 813 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S++ V + A D+ + A+ L GG GGG+P +AQ G P K Sbjct: 814 ILAGVEGD-KVSLIASVAKQYAANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEKF 871 Query: 886 DQAIAGVASFLKK 898 DQ A + ++L++ Sbjct: 872 DQVFAALPAWLEQ 884 >gi|160899488|ref|YP_001565070.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1] gi|205830045|sp|A9C0B9|SYA_DELAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160365072|gb|ABX36685.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1] Length = 874 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 374/909 (41%), Positives = 531/909 (58%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR +FL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y+ T Sbjct: 7 TVADIRKSFLDFFASKGHTIVESSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYKRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L + Sbjct: 67 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG P E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGAHVAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+A+ + T + + +VI DH+R+++FL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDLFQALIKAAARETHIADI--ETPSLKVIADHIRATAFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L MG AYP++ + + I E LR E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVAVMGDAYPKIREQEARITEVLRVE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RGL+ +D Sbjct: 365 EERFFETLANGMEILDAALA--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGLS-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+EEQ+++ARA K+ +L+ A F GY L Sbjct: 422 EAGFQTAMEEQKNKARAAGKF-------KMDRALEYTGDANAFTGYQKL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ V A+ +G V+E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 464 ------------AEAAKVVALYAEGSAVQELKAGQSGVVVLDTTPFYAESGGQVGDQGVI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R + D K +F HH ++E G L+ ++ +D Q R NHS TH++H Sbjct: 512 STAGARFAVEDTLKIKADVFGHHGVLESGSLKVGDAVQAEVDTQLRAATMRNHSVTHIMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H++P+T+ E++ IE VN I N P R+M Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNQPVTAEEIREIERRVNAEILANTPTDARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A A+GA L G KY D VRV+ + S LCGGTHV TG+I L +V E Sbjct: 632 DIESAKATGAMMLFGEKYGDSVRVLDIGS------SRELCGGTHVQRTGDIGLFKVVGEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG+ A ++L + + A+ LK + R+ E+ R L+ Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKEV 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + + ++ + D+K L+ MD L+ K+ + I+L Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT+ R A DL A + GG GGG+P MA +GG + + A+ Sbjct: 806 VDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAAL 863 Query: 890 AGVASFLKK 898 AGV +++ + Sbjct: 864 AGVHAWVAE 872 >gi|294626627|ref|ZP_06705224.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665630|ref|ZP_06730907.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599047|gb|EFF43187.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604576|gb|EFF47950.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 882 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGVDAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V AI++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|257093631|ref|YP_003167272.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046155|gb|ACV35343.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 878 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 365/910 (40%), Positives = 523/910 (57%), Gaps = 54/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKSAEIRDKFLKFFESKGHQIVASSSLVPHADPTLLFTNAGMNQFKDVFLGFDKRPYLRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LL + L Sbjct: 68 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIRYAWELLVDVYGLP 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 RL++TVY ED+EA+ +W + G+ A+++ RI N DNFW M +TGPCGPC+E Sbjct: 128 PDRLWVTVYAEDDEAYDIWTREIGVPAERVERIGDNKGARYASDNFWMMGDTGPCGPCTE 187 Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G EEG+RYIEIWN VFMQF + LPK S+DTGMGLER Sbjct: 188 IFYDHGEGIPGGPPGSPDEEGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERT 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF LI A+ + T + + RV+ DH+R+ +FLIADG++P Sbjct: 248 AAVLQHVHSNYEIDLFVRLIAAAARETAS--AELDSPSLRVLADHIRACAFLIADGVIPG 305 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+P L EMGSAYPEL+ + + + LR Sbjct: 306 NEGRGYVLRRIIRRAIRHGYKLGARAAFFHRLVPDLVAEMGSAYPELVSQQARVTDVLRQ 365 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +T++ G+ +L+G L+ L + NG AFKL+DT G PLD+ D+ RG + Sbjct: 366 EEVRFFETIEHGMSILEGELASLPGQGVFNGTTAFKLHDTFGFPLDLTADVCRERG-VSV 424 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ +F+ A+ +Q+ +ARA + + T F GY+ L Sbjct: 425 DVAAFDAAMAQQKEQARAAGKFRMATALD-------YSGPPTTFHGYERLD--------- 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V+ V A+ + G V+E G VV D+TPFYAE+GGQ+GD G Sbjct: 469 --------------VTGKVLALYRDGSPVDELSEGDIGVVVLDETPFYAESGGQVGDRGV 514 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G + D QK +F HH +V G+LR + + +D R + NHSATHL+ Sbjct: 515 LQTAGGIFAVEDTQKIQAAVFGHHGVVRTGVLRVDDGVAAKVDVLARARTVRNHSATHLM 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + P+ RFD H+ P+++ E++ +E VN+ I N RI Sbjct: 575 HKALREVLGGHVQQKGSLVDPEKTRFDFAHNAPLSADEIRHVEVIVNNEILANAATDARI 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M E+A SGA L G KY D VRV+++ S LCGG HV +G+I L I++E Sbjct: 635 MPIEEAQRSGAMMLFGEKYGDEVRVLTIGS------SKELCGGVHVRRSGDIGLFKILAE 688 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + + AG+RR+EA+TG A + + Q L A+ +K V ++ ++ + R L+ Sbjct: 689 TGVAAGVRRVEAVTGDNALALVQQQQALLAEAAAAVKAPVSEVPAKLAQVLDNVRSLEKE 748 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ K +L ++ ++ ++ D L+S +D L+ K++S ++L Sbjct: 749 LARLKARLASAQGDDLLAQAVEVKGARVLAAVMDGADVNALRSTIDKLRDKLKSAAVVLA 808 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K +++ VT DL + A +L + A+ + GG GGGRP MAQ+GG + A Sbjct: 809 STA-DGKVTLIAGVTGDLTGKVKAGELVNMVARQV-GGKGGGRPDMAQAGGSDAANLPAA 866 Query: 889 IAGVASFLKK 898 +A V +++++ Sbjct: 867 LASVRAWVEQ 876 >gi|120553897|ref|YP_958248.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8] gi|205830137|sp|A1TZ92|SYA_MARAV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120323746|gb|ABM18061.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8] Length = 876 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 389/912 (42%), Positives = 552/912 (60%), Gaps = 54/912 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FLE+FQ+ GH ++PSSSL+P +DPTL+FTN+GM FK++F G+E+ Y Sbjct: 1 MKTAELRQAFLEYFQQQGHAIVPSSSLVPHDDPTLLFTNAGMNQFKDLFLGREERDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119 T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E + Sbjct: 61 TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGEQHLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L Q +L++TVY ED+EAF +W + G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 LPQEKLWVTVYAEDDEAFDIWNQEIGVPAERIVRIGDNKGARYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G + GG PGS E+G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLE Sbjct: 181 TEIFFDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ L++A+ + G + RV+ DH+RS +FLIADG++ Sbjct: 241 RIAAVLQGVHSNYEIDLFQDLLKAASDILGGA--ATTEASLRVVADHIRSCAFLIADGVM 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRG+VLRRI+RRA + LG T+P L AL MG AYP+L+ ++ IE+ L Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATQPFFYKLTGALVELMGEAYPQLVSSRKQIEKVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTLD+GL LL+ ++ L EI G+ F LYDT+G P+D+ DI RGL Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETVFTLYDTYGFPVDLTNDIARERGLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + +A+E QR RARA S I G T+F GYD + G + Sbjct: 418 -LDYEGYEKAMEAQRDRARAASKFGIDYNAAGITIE-----GKTEFTGYDHVDGHE---- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++ ++ GE A +G + VV ++TPFYAE+GGQ+GDT Sbjct: 468 -------------------RIRTVLVNGEERN-AEAGDECVVVLERTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G R Q+TD +K+ + +H + G L + + ID+ R + NHSATH Sbjct: 508 GLLTWSGGRFQVTDTRKEGDN-HLHVGTLIEGELFPGLEVDARIDHARRERTKRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HV+Q GS + PD LRFD +H + +T +L+ IE VN+ I +N PV Sbjct: 567 LLHAALRNILGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERTVNEQILENTPVDI 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I + + A GA AL G KY D VRV+++ +S LCGGTHV+ TG+I L I Sbjct: 627 DITDMDTAKEKGAMALFGEKYGDVVRVLTMGT---DKYSVELCGGTHVARTGDIGLFRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEA+TG A + + L+ A +K ++ +VV +V+++ + R+L+ Sbjct: 684 SESGISSGVRRIEAVTGLGALEWVDETERTLRETARLVKGTRDSVVDKVKQVLDRNRQLE 743 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L S ++A + ++ + D K L D L+ K+ G+++ Sbjct: 744 KDVDALKAKLASSAGTDLAGSAVEVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + ++ K ++ VT+ +R A DL + A ++ G GGGRP MAQ GG + ++ Sbjct: 804 LATV-EDGKVVLVAGVTKSATNRIKAGDLMKHLASLV-DGKGGGRPDMAQGGGNDPSRLA 861 Query: 887 QAIAGVASFLKK 898 +A+AGV +++++ Sbjct: 862 EALAGVPAWVEQ 873 >gi|329902133|ref|ZP_08273037.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327548856|gb|EGF33484.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 869 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 383/909 (42%), Positives = 536/909 (58%), Gaps = 57/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF+ GH ++ SS LIP NDPT++ TNSGMV FK++F G ++ Y Sbjct: 1 MKST-EIRAKFLKFFESKGHTIVRSSPLIPGNDPTMLLTNSGMVQFKDVFLGTDQRAYSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT + L Sbjct: 60 ATSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTNVYLL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY ED+EA+ +W G+ ++IIRI N DNFW MA+TGPCGPCS Sbjct: 120 PKEKLWVTVYHEDDEAYAIWANEIGIPTERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G I GG PGS+ E+G+R+IEIWNLVFMQF + + LPK +DTGMG+ER Sbjct: 180 EIFYDHGPEIWGGPPGSAEEDGDRFIEIWNLVFMQFNRDEQGNMPRLPKPCVDTGMGMER 239 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A +LQ +NY+IDLF++LI+A+ + TG G+N + +VI DH+R+ +FLI DGI+P Sbjct: 240 LAAILQHVHSNYEIDLFQNLIKAAARETGTTDLGDN--SLKVIADHIRACAFLIVDGIIP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 A+EG GYVLRRI+RRA+ + LG +P L+ L EMG AYPEL QA + +E+ LR Sbjct: 298 ASEGHGYVLRRIIRRALRHGHKLGQAKPFFYLLVKDLVIEMGEAYPELTQAAVRVEQVLR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERFG+TL+ G+ +L+ L L L+G AF LYDT G PLD+ DI R Sbjct: 358 QEEERFGETLEHGMKILEAAL--LVTPTQLDGQTAFTLYDTFGFPLDLTADICRER-KVE 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D FN A+E+QR+ ARA + E T+F+GYD L Sbjct: 415 LDEAGFNVAMEQQRTTARAAGKFKMAAAVE-------YSGDKTRFVGYDALEQ------- 460 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+ V A+ G V +GQ+ VV D TPFYAE+GGQ+GDTG Sbjct: 461 ----------------SAGVIALYVNGTAVPRMTAGQEGIVVLDVTPFYAESGGQVGDTG 504 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G ++ + D + +F HH + G L + +D R + NHSATHL Sbjct: 505 MLTGAAVQFHVADTLRIQSEVFGHHGTLAGGTLSVGDKVAANVDPVARGRTIRNHSATHL 564 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + D RFD +H+ P+T+ E++ +E VN I N+ R Sbjct: 565 MHKALREVLGAHVAQKGSLVDTDKTRFDFSHNGPLTADEIRQVELIVNREILANVATEAR 624 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + S LCGG HV TG+I L I + Sbjct: 625 VMPYDDAVKYGAMALFGEKYGDEVRVLGIGS------SKELCGGVHVDRTGDIGLFKITA 678 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AGIRR+EA+TG+ A + + +++ A+ LKV + R+ ++ ++ R L+ Sbjct: 679 ESGVAAGIRRVEAVTGEGALALVQALSRQMQDAAAILKVQPDELSQRIGQVQDQVRSLEK 738 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L I + ++ ++ D L+ MD L+ K+++ I+L Sbjct: 739 DVSALKSRLAANQGDELLGQAVDIKGIKVLAAVLLGADVAALRVTMDKLKDKLKTAAIVL 798 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D R A +L A + GG GGGRP MAQ+GG + + Sbjct: 799 AAV-NDGKVSLIAGVTADATSRIKAGELVNFVALQV-GGKGGGRPDMAQAGGTDPSGLAA 856 Query: 888 AIAGVASFL 896 A+ GV ++ Sbjct: 857 ALLGVPGWV 865 >gi|218530772|ref|YP_002421588.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4] gi|218523075|gb|ACK83660.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4] Length = 891 Score = 892 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 447/896 (49%), Positives = 584/896 (65%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYLK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++ A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +T +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KAGVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRSNHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A + ++ + S +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL +R++AV L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|323496144|ref|ZP_08101204.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] gi|323318888|gb|EGA71839.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] Length = 860 Score = 892 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 377/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ AD+I+RI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ ++ G + + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGHED--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAGEELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNATIKTEEQTEFCGYTGTQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V I +GE +G K ++ +TPFYAE+GGQ GD G Sbjct: 466 ----------------KSNVAEIFVEGEAAGSLSAGDKAIIILGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGVFKVEDTQKLGN-AIAHHGVLAEGVLAKGDDVEAVVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H + +T AELK +E VN + N + T Sbjct: 569 LHAALRKVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRHNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q K + ++ E + + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEE--------------KLAESASKAKSLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + +I V + + DSK L++++D ++ ++ SG++ML Sbjct: 730 EIQKLKDKMAAAESANIMGKAQEINGVKVLVAGMEGADSKNLRTMVDDIKNQMGSGVVML 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 790 ANV-NDGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPA 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIQSVQPWLEE 858 >gi|302382286|ref|YP_003818109.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302192914|gb|ADL00486.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 881 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 423/894 (47%), Positives = 566/894 (63%), Gaps = 33/894 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS++ IR+TFL+FF +GH + S+ L+P NDPTLMF N+GMVPFK+ FTG P Y Sbjct: 1 MSSLKQIRSTFLDFFAADGHTKVHSAPLVPQNDPTLMFVNAGMVPFKDYFTGAATPPYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+ AW L+T+ + L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIEQAWKLVTEGYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY +D+EA +WKK++G DKIIRI +DNFW+M + GPCGPC+EIF+D G Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDNGPCGPCTEIFWDYG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG P E+G+RY+EIWN VFMQFE++N + LPK S+DTGMGLERM +VLQ Sbjct: 181 DHVAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDEIVRSLPKPSVDTGMGLERMTSVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K + +D DLF+ LI ASE T K EG+ +HRVI DHLRSSSFLIADG+ P+NEGRGY Sbjct: 241 KNSVFDTDLFQTLIAASEDATSTKAEGDRAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +EMG AYPEL +A+ IEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVSEMGEAYPELARAQASIEETLKQEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LL+ LG+ ++ G AF LYDT+G PLD+ QD RG +D +F+ Sbjct: 361 TTLGRGMGLLEDATRDLGEGGVIPGQTAFTLYDTYGFPLDLTQDEARRRGFT-VDTDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++R +A+ G G + W +LK++ G T F GYD + G Sbjct: 420 AAMEQQKTRGKANWKGSGQTASTGEWLALKDRLGPTVFTGYDAVDG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V AI++ G + +G+ EV+FDQTPFY E GGQ GD G G Sbjct: 466 ---------SGEVLAILKDGTAADSVETGETAEVLFDQTPFYGEGGGQAGDKGEIEWAGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ DV K ++ H V G L L R NHSA HL+H AL Sbjct: 517 SARVLDVLKPTGDLYAHTIEVTSGTLAIGTRAQLRAAPDARLTTRANHSAAHLVHAALKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H+ P+T EL IE VN +I QNLP T++M ++A Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHNAPLTEDELARIETEVNAVIRQNLPAETKLMGPQEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 I +GA AL G KY D VRV+++ +S LCGGTHV+ TG+I L I SE+ I Sbjct: 637 IEAGAVALFGEKYGDEVRVLTLGKSLTSDKPYSVELCGGTHVARTGDIGLFKITSETGIA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRR+EA+TG+ AR L+ Q +SLA KV +V RVE + E + L+ A+ Sbjct: 697 AGIRRVEALTGEAARQFLLAQAGVARSLAQTFKVQPLDVPARVEALSTERKALEKQVAEL 756 Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + + +I V ++ ++ VD K L+ V + +K++ SG++ L+G++ Sbjct: 757 KKQLALGGGGSANAAPEEINGVKLIARVLDGVDGKGLRGVAEDFRKQVGSGVVALIGVT- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + KA+V + T D+ DR NA DLAR + +GG G GG+ AQ G P+G+KA+ Sbjct: 816 DGKAAVTVAATSDVTDRVNAADLARAAVIAMGGQGAGGKADFAQGGAPDGSKAE 869 >gi|83955444|ref|ZP_00964075.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1] gi|83840088|gb|EAP79263.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1] Length = 886 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 426/896 (47%), Positives = 560/896 (62%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI +W+L+TKE + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLY+TVY D+EA ++WKK++GL D+IIRI T+DNFW M TGPCGPCSEIF+D G Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL ++LI+AS + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L L G+ AFKLYDT+G P+D+ QD L + +D+ FN Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G +WF + EK G T F+GYD Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATVWFDVAEKSGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G V E G V++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K A +F+H V G ++T + VL +D+ R + NHSATHLL+ AL Sbjct: 517 VVTVTDTRKTAG-VFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD +H+ +T+ +L ++E+ VN I QN V TRIM +DA Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHAMTTDQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ D +S LCGGTHV TG+I ++ Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +SS +GIRRIEA+TG A L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755 Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + +L + ++ + F++ +++ V K+L +++D + K+ SG ++ Sbjct: 756 EVAQLRRELAMSGGGDAGAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L+ + KA+V VT DL +AVD+ + LGG GGGGRP MAQ G + Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKDV 870 >gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300075693|gb|ADJ65092.1| alanyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Length = 874 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 375/914 (41%), Positives = 536/914 (58%), Gaps = 61/914 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + IR FL+FF+ H ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 1 MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 61 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 121 ADKLWATVYQTDDEAYDIWTKDIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G + GG P +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 181 IFYDHGPDVWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A +LQ +NY+IDLF+ LI+A+ + TG + + RVI DH+R++SFLI D Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETD--LSNASLRVIADHIRATSFLIVD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG T+P L+ L +MG+AYPEL +A +E Sbjct: 299 GVIPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFHKLVKDLVVQMGAAYPELPEAAERVE 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 L+ E+ERFG+TL+ G+ +L+ L+ L+G+ AF LYDT+G PLD+ DI R Sbjct: 359 MVLKQEEERFGETLEHGMKILEAALA--ANTGKLDGETAFTLYDTYGFPLDLTADICRER 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D F A+E Q+S ARA + ++ T+F+GY+ L Sbjct: 417 N-VELDEAGFTAAMERQKSAARAAGKFKMAAA-------IEYTGDKTRFVGYESL----- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S+ V A+ G V++ +GQ VV D TPFYAE+GGQ Sbjct: 464 ------------------AQSAKVVALYVAGSPVQKIEAGQDAIVVLDTTPFYAESGGQC 505 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + D QK +F HH + +G L ++ +D R + NHS Sbjct: 506 GDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKGSLAVGDAVQAKVDADQRARTMRNHS 565 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LGSHVSQ GS + D RFD +H+ P+T+ E++ +E+ VN + N+ Sbjct: 566 ATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSHNAPMTAEEIRRVEEIVNREVLANVA 625 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 ++M +DAIA+GA AL G KY D+VRV+S+ S+ LCGGTHV+ TG+I L Sbjct: 626 TGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIG------TSTELCGGTHVTRTGDIGLF 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE + AGIRR+EA+TG+ A + + ++ A+ LK ++ R+ ++ ++ + Sbjct: 680 KIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPRIGQVQDQVK 739 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ A K +L I + ++ + D L+ MD L+ K+++ Sbjct: 740 ALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMDKLKDKLKTA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+L + K+ K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 800 AIVLGSV-KDGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPA 857 Query: 884 KADQAIAGVASFLK 897 A+ GVA +++ Sbjct: 858 ALPGALQGVAGWVQ 871 >gi|297616546|ref|YP_003701705.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297144383|gb|ADI01140.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 877 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 372/908 (40%), Positives = 538/908 (59%), Gaps = 45/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR FL++F +NGH ++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MRTSSEIRKMFLDYFAENGHTVVESSSLVPANDPTLLFTNAGMNQFKDVFLGIDKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG YFK AI AWDLLT+ L Sbjct: 61 ATSSQKCVRAGGKHNDLETVGRTARHHTFFEMLGNFSFGDYFKREAIFYAWDLLTRVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++T++ +D+EAF+LW++I+G+S KI+R+ DNFW+M +TGPCGPCSEI +D+G Sbjct: 121 PPERLWVTIFTDDDEAFELWQEIAGISPQKIVRMGEKDNFWAMGDTGPCGPCSEIIYDRG 180 Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E P + + +R++EIWNLVFMQF + LP+ SIDTGMGLER+ ++L Sbjct: 181 EKYRCDAPLCALGVCDCDRWLEIWNLVFMQFNRDEAGNLTPLPRPSIDTGMGLERITSIL 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG-NNIVNHRVIVDHLRSSSFLIADGILPANEG 296 Q +N+D DLF +IQ E++TG KY+ RVI DH R+ +FLI DG+LP+NEG Sbjct: 241 QGVDSNFDTDLFIPIIQKIEEMTGKKYDRGPGGFPFRVIADHSRACTFLIGDGVLPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + RLLG P + ++ + +M +YP+L+ + + + +R E+E Sbjct: 301 RGYVLRRILRRAVRFGRLLGIEAPFLYRMVGVVVDKMKDSYPDLVDKQEFVAKVVRMEEE 360 Query: 357 RFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TL+ G+ + ++ + ++G AF LYDT+G PLD+ +D+ GL G++ Sbjct: 361 RFFVTLNEGIRKVGEIIERCQAEGRKDISGQDAFMLYDTYGFPLDLTEDMAEENGL-GVN 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN+ +EEQR RAR G + EK + E +T F GY L Sbjct: 420 KEDFNRLMEEQRERARRAQKGEDAFAQEKRLAEMLEGIPSTDFEGYQRLFTL-------- 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + ++AI+ E ++ G +V QTPFYAE+GGQ+ D G Sbjct: 472 ---------------TQIQAIISGDEELDLIRDG-GAILVLAQTPFYAESGGQVADKGVI 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + DV+K A I H +GIL + +D Q R + NH+ATHLLH Sbjct: 516 KGSEGTFIVDDVKKVAGWI--LHYGRVQGILVKNEEVQAEVDEQRRLATARNHTATHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G H Q GS + P+ LRFD +H P+T E+++IED VN I V + Sbjct: 574 RALRMVVGEHAQQKGSLVEPERLRFDFSHFAPLTEEEIQAIEDIVNRKIWDLEKVEVDLA 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A GA AL G KY D VRV+S+ G S LCGGTHV +TG+I L I++E Sbjct: 634 TLEEAKQKGAMALFGEKYGDEVRVISI-----GDFSIELCGGTHVENTGQIGLFKIINEG 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI AG+RR+EA+TG RA +L Q+ +LK+ AS LKV + RVE + E ++ + Sbjct: 689 SIGAGLRRVEALTGPRALDYLNAQERELKTAASVLKVPAQELAQRVESLSRELKESEKEI 748 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L ++ + ++ V + +S D L+ + L+ K+ +++L G Sbjct: 749 EALKNKLARQEAAELLQQAFEVNGVKVLVAEMSGQDMAVLRQNGEMLRDKLGRAVVVL-G 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +++ K ++++ V ++L DR +A ++ +AKV+GGGG GGR MAQ+GG K +A+ Sbjct: 808 SARDGKVNLVVFVAKELTDRLHAGEIVSAAAKVVGGGG-GGRADMAQAGGKIPEKLGEAL 866 Query: 890 AGVASFLK 897 + ++ Sbjct: 867 QEARAKIE 874 >gi|254513877|ref|ZP_05125938.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3] gi|219676120|gb|EED32485.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3] Length = 867 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 377/903 (41%), Positives = 536/903 (59%), Gaps = 46/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL +F+ + H+ +PSSSL+P +DPTL+FTN+GM FK++F G E Y Sbjct: 1 MKTGEIREAFLAYFESHDHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAESRPYHRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI+ AWD LT E L Sbjct: 61 VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKSQAIRFAWDFLTVELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++TV+ D+EA ++W + G A++I R+ DNFW M +TGPCGPCSE+F+D GE Sbjct: 121 KERLWVTVHLSDDEAERIWIEEIGFPAERISRL-DEDNFWQMGDTGPCGPCSEVFYDHGE 179 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS ++ +RYIEIWNLVFMQ+ + + LPK S+DTGMGLER+A +LQ Sbjct: 180 DVPGGPPGSPDDDLDRYIEIWNLVFMQYNRSADGQMTPLPKPSVDTGMGLERIAAILQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID+F+ LI A+ +V G + RVI DH+RSS+FLI DG+LP NEGR YV Sbjct: 240 HSNYEIDVFQALIAAAAEVVGATD--LEASSLRVIADHIRSSAFLIIDGVLPGNEGRSYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRA+ + LG TE L+ L +MG YPEL + IEE +R E+E+F + Sbjct: 298 LRRIMRRAIRHGNKLGATELFFSKLVAPLAAQMGDFYPELRAQQARIEEVIRGEEEQFAR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++G+ +LD L+ L +++ GDV FKLYDT+G P+D+ DI R + +D+ + + Sbjct: 358 TLEQGMEILDEALADLQ-GDVIPGDVVFKLYDTYGFPVDLTNDIARERNFS-LDMAGYER 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A++ QR R++ G + S G T F GY+ + G Sbjct: 416 AMQVQRERSKEG------GGFSVDYNSTLTLEGETVFTGYEHVAG--------------- 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S+ V A+++ E V + G+ V+ DQTPFY E+GGQ GDTG G+ Sbjct: 455 --------SAQVVALLRDAEQVMQLAEGESGVVILDQTPFYGESGGQAGDTGYLSAQGLS 506 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 L++TD K +HH V +G + +L ID + R+ +NHSATHLLH AL Sbjct: 507 LEVTDTTKAQGH-HLHHVKVLQGTVSVGDTLDCRIDNEVRQNTRLNHSATHLLHAALRNE 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + LRFD ++ + ++ +L+++ED+VN I N V T++M +DA Sbjct: 566 LGDHVTQKGSLVDAQRLRFDFSNPEAMSDEQLRAVEDSVNAQIRANTDVHTQLMTMDDAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY D VRV+S+ S LCGGTHV TG+I LL I+SE + +GI Sbjct: 626 NAGAMALFGEKYGDEVRVLSMGQ---DGFSVELCGGTHVQRTGDIGLLRIISEGGLASGI 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A +H+ D L + ++ + NV +V + R L+ A+ K + Sbjct: 683 RRIEAVTGANALAHMRSVDGALAGVCDAVRGTTDNVADKVAALRSANRDLEKELARLKQK 742 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S ++ + ++ + D L+ +MD + K+ S +I+L + + K Sbjct: 743 LASSAGSDITASAIEVDGIKVLATAVDGADPGALRGIMDQCKSKLGSAVILLAAV-NDDK 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ VT+DL +R A DL + A LGG G GGRP MAQ GG A+ V ++ Sbjct: 802 VALVAGVTKDLTERVRAGDLMKEFAGRLGGKG-GGRPDMAQGGGTEPALLSAALEDVPAW 860 Query: 896 LKK 898 + + Sbjct: 861 VAQ 863 >gi|114707288|ref|ZP_01440185.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506] gi|114537169|gb|EAU40296.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506] Length = 912 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 475/910 (52%), Positives = 634/910 (69%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F KNGHE + SS L+P NDPTLMF N+GMV FKN+FTG+EK Y Sbjct: 22 MSGVNEIRSAFLDYFAKNGHEKVSSSPLVPRNDPTLMFVNAGMVQFKNVFTGEEKRSYSR 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW L+TK+F L Sbjct: 82 AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWSLITKDFGL 141 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY ED+EA LWKKI+GLS D+IIRI T+DNFW+M ETGPCGPCSEIFFD G Sbjct: 142 PRDKLLVTVYSEDDEAAGLWKKIAGLSDDRIIRIGTSDNFWTMGETGPCGPCSEIFFDHG 201 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E IPGG P +E+G+R+IEIWNLVFMQ+EQ ER LP+ SIDTGMGLER+A VLQ Sbjct: 202 EDIPGGPPGSPNEDGDRFIEIWNLVFMQYEQLAGDERLDLPRPSIDTGMGLERIAAVLQG 261 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI A E G + EG + +HRVI DHLRS++FLIADG+LP+NEGRGY Sbjct: 262 VHDNYDIDLFRTLIAAVENAIGSRAEGAAVASHRVIADHLRSTAFLIADGVLPSNEGRGY 321 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +ARLLG EP++ LLP L EMG AYPEL++ + LI ETL+ E++RF Sbjct: 322 VLRRIMRRAMRHARLLGAGEPVLYKLLPTLIAEMGRAYPELVRGEALIAETLKLEEKRFL 381 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LL +G + L+G+ AFKLYDT+G PLD+ QD L RG +D+ +FN Sbjct: 382 QTLDRGLSLLADATEGMGAGQKLSGETAFKLYDTYGFPLDLTQDALRQRG-IAVDLDAFN 440 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ AR G G TEK+WF ++++ GAT+F+GYD Sbjct: 441 TAMERQKAEARKSWAGSGEAATEKVWFPIRDRVGATEFLGYD------------------ 482 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T S V A+VQ G V+ A +G+KV VV +QTPFY E+GGQLGD G Sbjct: 483 -----TEEASGSVVALVQDGAEVKSATAGEKVFVVVNQTPFYGESGGQLGDAGVMTDGET 537 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I D QK A+G+FVH IV+ G + + +L L ++++ R ++ NHSATHLLH L Sbjct: 538 VIEIEDTQKLADGLFVHRGIVKSGEVSVDDALDLKVEHRRRSKIRSNHSATHLLHEGLRE 597 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFD +H KP+ AE++++E N I+ QN PV TR+M ++A Sbjct: 598 VLGTHVAQKGSLVAPERLRFDFSHPKPMDRAEIEAVERLANGIVRQNAPVETRLMAVDEA 657 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I SGA AL G KY D VRVVS+ + G +S+ LCGGTHVS+TGEI ++++V ES Sbjct: 658 IESGAMALFGEKYGDEVRVVSMGTAQEGKKAGKPYSTELCGGTHVSATGEIGVVHVVGES 717 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR +L QD++++ +A+ LK S + + R+E + EE R+L+ Sbjct: 718 AVGAGVRRIEALTGEAARDYLREQDQRVRKMAALLKASPEDALARLETVVEERRRLEREL 777 Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ K +L + + S + ++++ +I V ++LK ++D +K +QSG++ V Sbjct: 778 AEVKKRLALAGEGGGKGDSAKTVNGISYLGRVIDGVSGRDLKGLVDEAKKSVQSGVVAFV 837 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ E KASV++ VTEDL RF+AV L R ++ +GG GGGGRP MAQ+GGP+ + A A Sbjct: 838 GVA-EGKASVVVGVTEDLTARFDAVTLVRTASGAIGGKGGGGRPDMAQAGGPDADNAAGA 896 Query: 889 IAGVASFLKK 898 IA V L++ Sbjct: 897 IAAVEKALQE 906 >gi|167855110|ref|ZP_02477882.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755] gi|167853745|gb|EDS24987.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755] Length = 853 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 364/890 (40%), Positives = 543/890 (61%), Gaps = 55/890 (6%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PSSSL+P NDPTL+FTN+GM FK++F G +K Y T+ Q+CVRAGGKHNDL+NVG Sbjct: 1 MPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNRATSSQRCVRAGGKHNDLENVGY 60 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLW 140 T RHHTFFEMLGNFSFG YFK AI AW+ LT + L + +L++TVY+ D+EA+ +W Sbjct: 61 TARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWLALPKEKLWVTVYETDDEAYDIW 120 Query: 141 KKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-E 192 + G+ A++I+RI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS+ E Sbjct: 121 NREIGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEE 180 Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252 +G+R+IE+WN+VFMQF +Q LPK S+DTGMGLER++ VLQ +NY+ID+F+ L Sbjct: 181 DGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGLERISAVLQHVNSNYEIDIFQAL 240 Query: 253 IQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312 I+ + + + + RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ + Sbjct: 241 IKEIASLLNVTD--LDNKSLRVIADHIRSCAYLIADGVMPSNEGRGYVLRRIIRRAVRHG 298 Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372 +LG L+P L MG A L Q + I++ L++E+++F +TL+RGL LL+ Sbjct: 299 NILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKALKAEEDQFARTLERGLALLEDA 358 Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432 L+ + +++L+G+VAFKLYDT+G PLD+ D+ RG+ ID SF + ++ QR+RA+A Sbjct: 359 LAKVE-NKVLSGEVAFKLYDTYGFPLDLTADVCRERGIT-IDEASFEREMQAQRARAQAS 416 Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492 S + + + G+T+F GY++ + V Sbjct: 417 SNFG------TDYNYVIKVDGSTEFKGYEVTE-----------------------CEATV 447 Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552 A+ G+ VE SG+ VV D+T FY E+GGQ+GD+G + ++ D QK Sbjct: 448 VALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGDSGVIASEICNFEVNDTQKYG-Q 506 Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 +F H + G L + ++ R +++NHSATHLLH AL +LG HV+Q GS + Sbjct: 507 VFGHIGQLASGTLSVGDKVKAEVNTTRRHAITLNHSATHLLHSALRQVLGDHVAQKGSLV 566 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672 + + LRFD + + I+ A+L+ IE +N I +N+ V T +M+ E A GA AL G KY Sbjct: 567 SENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVTTEVMDLESAKQKGAMALFGEKY 626 Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 DRVRVV + S LCGGTHV TGEI L +VSE ++ AG+RRIEA+TG+ A Sbjct: 627 GDRVRVVDIT----AAFSVELCGGTHVKQTGEIGLFKVVSEGAVAAGVRRIEAVTGENAI 682 Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLS 787 L Q + L A LK ++V +++++ E+ +K++ + K +L + Sbjct: 683 GLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKVEKELQQLKDKLAAQAGGELAKQ 742 Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847 +I VN + + VD+K L++++D L+ ++ S +I+ ++K ++++ VT+DL Sbjct: 743 AQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVIV-FATQTDEKVNLIVGVTKDLT 801 Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 D+ NA +L L A+ + GG GGGR MA +GG QA+ ++++ Sbjct: 802 DKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENITQALNVATNWIQ 850 >gi|120598090|ref|YP_962664.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1] gi|146293839|ref|YP_001184263.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32] gi|120558183|gb|ABM24110.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1] gi|145565529|gb|ABP76464.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32] Length = 892 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 380/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 22 TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 81 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI W LT+ L + Sbjct: 82 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 141 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 142 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 201 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ + E LPK S+DTGMG+ER+A Sbjct: 202 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 261 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + + RVI DH+RS +FL+ADG++P+N Sbjct: 262 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 319 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E Sbjct: 320 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 379 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 380 EEQFARTLERGLGILDAALSELT-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 437 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 438 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 482 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + +V D TPFYAE+GGQ+GD G Sbjct: 483 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 528 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 529 VANGIEFTVNDTQKYGQATGHQ-GVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 587 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 588 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 647 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 648 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 702 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 703 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 762 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 763 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 821 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 822 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 880 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 881 AQVLPWITE 889 >gi|320155348|ref|YP_004187727.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] gi|319930660|gb|ADV85524.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] Length = 860 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 380/906 (41%), Positives = 541/906 (59%), Gaps = 59/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W + G+ AD+IIRI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ ++ G + + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNAKIKTESETEFCGYTGTQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S+V I +GE + +G K ++ +TPFYAE+GGQ GD+G Sbjct: 466 ----------------NSVVAEIFVEGEAADSLSAGDKAIIILGETPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + Q+ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFQVEDTQKLGN-AIAHHGVLVEGVLAKGDQVSAIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q A + + + + + +E ++L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQ-------ARKFEEKLQDAANKAKSLEKEIQQLKD 736 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A + ++ +IA V + + D+K L+ ++D L+ ++ SGIIML ++ Sbjct: 737 KLASQASANLIDQ--VKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGNVA- 793 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + + A+A V Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852 Query: 893 ASFLKK 898 +++ + Sbjct: 853 DAWIAE 858 >gi|116749953|ref|YP_846640.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] gi|205830235|sp|A0LLA3|SYA_SYNFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116699017|gb|ABK18205.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] Length = 885 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 373/916 (40%), Positives = 525/916 (57%), Gaps = 52/916 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF + GH ++ SSS+IP +DP+L+FTN+GMV FK F G+EK Y Sbjct: 1 MKASEIRKAFLDFFAQRGHSVVKSSSVIPHDDPSLLFTNAGMVQFKRTFLGEEKRPYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE A++ AW LT++ L Sbjct: 61 ATSQKCMRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAVEYAWRFLTEDMGLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + +LY T+++ DEEA W + L AD+I+ T DNFWSM +TGPCGPCS Sbjct: 121 REKLYATIHEGDSEMRLGPDEEARGFWARY--LPADRILTFPTKDNFWSMGDTGPCGPCS 178 Query: 174 EIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 EI DQG + G P + +R++E+WNLVFMQF ++ LPK SIDTGMGLE Sbjct: 179 EILIDQGAHVGCGKPDCRPGCDCDRFLELWNLVFMQFNRKEDGTMEPLPKPSIDTGMGLE 238 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A V+Q+ +NYD DLF + +++G +Y + V+ +VI DH R+++FLI DG Sbjct: 239 RVAAVIQKVPSNYDTDLFAPMRAKIAELSGYRYGTDPEKDVSVKVIADHGRAAAFLIGDG 298 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ + R LG P + + A+ M AYPEL++++ I Sbjct: 299 ALPSNEGRGYVLRRVLRRALRHGRFLGLDRPFLSEVAVAVMESMQDAYPELLESRNFITR 358 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 + +E+ERF +TLD GL LL + L + + G + FKLYDT+G P+DI+ D+ Sbjct: 359 VILNEEERFNETLDNGLRLLQNEIRRLRDEGAGTIPGALIFKLYDTYGFPIDIITDMARD 418 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D F +E+Q+ ++R H G G + + L + +T+F+GYD L Sbjct: 419 LDFK-VDEAGFADLMEKQKEQSRMHWKGSGEREVSEAYRQLSAEGVSTRFVGYDTL---- 473 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S + A+V+ G+ VEEA +G VEVV +TPFY AGGQ Sbjct: 474 -------------------SAQSTIAALVRDGQAVEEAPAGTDVEVVTSETPFYGAAGGQ 514 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G +G R+ ++D K + VH VE G LR ++ L +D R +++H Sbjct: 515 VGDQGVIVGPSSRVIVSDTLKLPGDLIVHVGKVESGRLRVGETVRLEVDQALRGDTALHH 574 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH L +LG HV Q GS + PD LRFD TH I+ EL IE VN+ I N Sbjct: 575 TATHLLHSVLRRVLGDHVKQAGSMVAPDRLRFDFTHFAAISRDELAEIERLVNEQIRVNR 634 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R MN ++A+ +GA AL KY DRVR+V + S LCGGTH TG+I L Sbjct: 635 DLQVREMNLDEALKTGAMALFEEKYGDRVRMVEIPG-----FSRELCGGTHTHRTGDIGL 689 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + E SI +G+RRIEA+ G+RA +L Q L A LK V RVE++ Sbjct: 690 FVVTQEMSIASGVRRIEALAGRRALDYLGRQQSVLHQAAGLLKAGPFEVAERVEKLLANQ 749 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++++ K L + + ++ V + + D K L+ + D ++++ S Sbjct: 750 KQMEKELEALKSSLTSKRSADLLEQAEEVGGVKVLVMRVEADDPKALREMNDRFKERLSS 809 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ +L G + KA +L+ VT DL R +A +L + K + GG GGGRP MAQ+GG Sbjct: 810 GVTVL-GAHQGDKAFLLVGVTPDLTSRVHAGNLIKEIVKTI-GGSGGGRPDMAQAGGNRP 867 Query: 883 NKADQAIAGVASFLKK 898 K A+ L++ Sbjct: 868 EKLQDALDLARKLLRE 883 >gi|34497059|ref|NP_901274.1| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] gi|41018171|sp|Q7NXM2|SYA_CHRVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|34330326|gb|AAQ59280.2| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] Length = 877 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 386/914 (42%), Positives = 530/914 (57%), Gaps = 60/914 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK Y Sbjct: 1 MKTSEIRKKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 TTSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWEFLTGEQWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L +TVY D+EA+ +W + GL ADKI+RI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLMVTVYATDDEAYDIWHQTVGLPADKIVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIFFD G + GG P E+G+R++EIWN VFMQF + LPK S+DTGMGLE Sbjct: 181 TEIFFDHGPSVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDEAGTLHPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++TVLQ +NY+ D L++A+ + TG++Y ++ + +VI DH+R+ SF++ADGIL Sbjct: 241 RLSTVLQHVKSNYETDALACLVRAAARETGVEY-SQDVPSLKVIADHIRACSFMVADGIL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI RRA+ + LG ++ L EMG AYPEL + + IE+ L Sbjct: 300 PSNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVAEMGEAYPELREKQAHIEDAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R+E+ +F +TL+ G+ L+D L G L+GD FKLYDT G P+D+ DI RG+ Sbjct: 360 RAEEIKFAETLEIGMGLVDSALE--GGKTALDGDTIFKLYDTFGFPVDLTADICRERGIH 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D+ F +A+E QR R RA S SG + T+F GYD Sbjct: 418 A-DLEGFERAMEAQRERGRAGSNFKMSG-------KIAYDGEDTRFHGYD---------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V + V A+ + + V+ +G + VV D T FYAE GGQ+GD Sbjct: 460 -------------KSSVEAKVLALYKGTDPVDSLSAGDEGIVVLDGTAFYAEGGGQVGDV 506 Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G G + D QK F H + RG L+ ++ TID R+ + NHS Sbjct: 507 GEISAAGGIAALFDVADTQKIQGAAFGHKGKLARGALKVGDAVTATIDLHQRQASARNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV Q GS + P+ RFD H + +T+A++ +E VN +IA N Sbjct: 567 ATHLLHAALRHVLGGHVVQKGSLVNPERTRFDFAHGEAVTAAQIAELERVVNHVIAANYE 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +M+ E A SGA L G KY D VRV+++ G S+ LCGGTHV TG+I L Sbjct: 627 VKAELMSMEAAQKSGAMMLFGEKYGDEVRVLTM-----GDFSAELCGGTHVKRTGDIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767 IV+E + AG+RRIEA+TG+ A +++ QD +K A+ LK V+ ++ + + Sbjct: 682 KIVAEGGVAAGVRRIEAVTGEGALAYIQAQDALIKEAAAALKAQTSDEVLAKIAALQDSA 741 Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L+ AK K QL + I V ++ + D+ L+ +D L+ K+ S Sbjct: 742 KALEKELAKLKGQLASSAGDSLADAAADINGVKVLAAELPGADNTALRETLDKLKDKLGS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L + K +++ VT DL + A +L A+ + GG GGGRP MAQ+GG Sbjct: 802 AAIVLAA-KGDGKVALVAGVTADLTGKLKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQP 859 Query: 883 NKADQAIAGVASFL 896 D A+ GV +++ Sbjct: 860 ENLDAALNGVQAWV 873 >gi|260752686|ref|YP_003225579.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552049|gb|ACV74995.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 890 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 451/914 (49%), Positives = 593/914 (64%), Gaps = 41/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E Y+ Sbjct: 1 MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF+D Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+VLQ Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL +L+ HL + L G+VAF+LYDT+G P D+ D L AR L +D F+ Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR ARA G G +++IWF + ++ G T+F GY Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G G+ Sbjct: 462 -----AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH AL Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HVSQ GS ++ + LRFD +H K ++ EL +IE VN I N V TR+M E Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A+ +GA AL G KY + VRV+S+ + S LCGGTHVS+ G+I L +IVSE Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK + Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756 Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A + L + + + K+ F+ +I +D K L+ ++D +K I+SG+ Sbjct: 757 LADAQKALALANANGGQGSNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I L+ + E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+ Sbjct: 817 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875 Query: 885 ADQAIAGVASFLKK 898 A QA+ V + L+K Sbjct: 876 AAQALEAVKALLEK 889 >gi|82701157|ref|YP_410723.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] gi|123545319|sp|Q2YD40|SYA_NITMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|82409222|gb|ABB73331.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] Length = 862 Score = 891 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 371/903 (41%), Positives = 532/903 (58%), Gaps = 49/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FLEFF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K Y Sbjct: 1 MKSSEVRQKFLEFFETHGHTIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT + Sbjct: 61 ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAIRFAWEFLTDILKIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180 + RL+ITVY ED+EA +W G+ + + RI T DNFW M +TGPCGPCSEIF+D Sbjct: 121 RERLWITVYAEDDEAADIWLNEVGIDSSRFTRIATQDNFWQMGDTGPCGPCSEIFYDHGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E G + +G+RY+EIWNLVFMQ+ + + LP+ S+DTGMGLER++ V+Q+ Sbjct: 181 EIPGGPPGTPNADGDRYVEIWNLVFMQYNRDSAGTLHPLPRPSVDTGMGLERISAVMQQV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+A+ + T + + VI DH+R+ SFLIADG++P NEGRGYV Sbjct: 241 HSNYEIDLFQQLIKAAARATNTTD--LSSSSLNVIADHIRACSFLIADGVIPGNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG +P L+ L + MG AYPEL++AK + L+ E+ERF + Sbjct: 299 LRRIIRRAIRHGYKLGQKQPFFHQLVEDLASVMGQAYPELMEAKTRVSAVLKQEEERFAE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ +L+ L D +L+G+ F+LYDT G PLD+ DI RG ID F+Q Sbjct: 359 TLENGMQVLEAALRR--GDRMLDGETLFRLYDTFGFPLDLTADIARERG-IAIDEAGFDQ 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E+QR RAR S + + +T F GY+ LR Sbjct: 416 AMEQQRERARTTSKFIMQEA-------IAYSGPSTTFHGYESLRQ--------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V AI ++G VE +G + +V D+TPFYAE+GGQ+GD+G + Sbjct: 454 --------EGQVLAIYKEGSRVEFIEAGDEAVIVLDKTPFYAESGGQVGDSGELLAANGT 505 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + D QK +F H ++ G L T +++ +D R + NHS THL+H AL + Sbjct: 506 FAVADTQKIQADVFGHKGLLRSGRLATGDAVLAEVDRAARARTERNHSVTHLMHKALREV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + + RFD H++P+T AE++ +E VN I N R+M EDA Sbjct: 566 LGHHVQQKGSLVDANKTRFDFAHNQPVTDAEIRKVEMLVNAEILANAATEARMMAIEDAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA L G KY+D VRV+ + S LCGGTHV TG+I L IV+ES + AG+ Sbjct: 626 KSGAMMLFGEKYSDEVRVLDIG------TSRELCGGTHVKRTGDIGLFKIVAESGVAAGV 679 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RR+EA+TG+RA +++ Q+ +L+ +A+ +K + R+ +I + + L+ + K + Sbjct: 680 RRVEAVTGERALTYIQEQELQLQRVAAAVKAQPQDAAARITQILDNVKHLERELGRMKSK 739 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L +I V ++ + E D K L+ +D + K +S + +L + ++ K Sbjct: 740 LASSQGDDFADRVREIKGVKVLAVCLEEADPKTLREAVDKFKNKFKSCVTVLAAV-EDGK 798 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT DL R A DL A+ + GG GGGR +AQ+GG + A+ VAS+ Sbjct: 799 VKLIAGVTSDLTARLKAGDLVNFVAQQV-GGKGGGRADLAQAGGTVPDSLPAALESVASW 857 Query: 896 LKK 898 +++ Sbjct: 858 VEQ 860 >gi|205830244|sp|A1RHG5|SYA_SHESW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830245|sp|A4Y931|SYA_SHEPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 380/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWN+VFMQ+ + E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALSELT-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A G + + + T F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + +V D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGIEFTVNDTQKYGQATGHQ-GVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L + + VN + + V++ L+ + D L++K++S II+L G Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 AQVLPWITE 871 >gi|37680987|ref|NP_935596.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016] gi|41018162|sp|Q7MHR6|SYA_VIBVY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|37199737|dbj|BAC95567.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016] Length = 860 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 379/906 (41%), Positives = 538/906 (59%), Gaps = 59/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W + G+ AD+IIRI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ ++ G + + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + ++F GY + Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNAKIKVDAQSEFCGYTSTQER------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V A+ +GE +G K V+ +TPFYAE+GGQ GD+G Sbjct: 467 -----------------SDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + Q+ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFQVEDTQKLGN-AIAHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q A + + + + + +E ++L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQ-------ARKFEEKLQDAANKAKSLEKEIQQLKD 736 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A + ++ +IA V + + D+K L+ ++D L+ ++ SGIIML ++ Sbjct: 737 KLASQASANLIDQ--VKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGNVA- 793 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + + A+A V Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852 Query: 893 ASFLKK 898 +++ + Sbjct: 853 DAWIAE 858 >gi|148553432|ref|YP_001261014.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1] gi|205830213|sp|A5V3L0|SYA_SPHWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148498622|gb|ABQ66876.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1] Length = 887 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 444/896 (49%), Positives = 584/896 (65%), Gaps = 38/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL+ F K GHEL+PS+ L+P NDPTLMF N+GMVPFKN+FTG EK Y Sbjct: 1 MTSTNDIRRSFLDHFAKEGHELVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI LAW L+T + + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISLAWSLITGTWGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TV+ D+EAF LWKK G+ +IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PADRLTVTVFHTDDEAFDLWKK-IGMPDSRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 179 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 IPGG P E+G+R++EIWNLVFMQ+EQ +K+ R LP+ SIDTGMGLER+A VLQ Sbjct: 180 AHIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVDKETRIDLPRPSIDTGMGLERIAAVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T G+ +HRVI DHLR+S FL+ADG+LPANEGRGY Sbjct: 240 VHDNYDTDTFKALIAASGELTRTATNGDFKASHRVIADHLRASGFLVADGVLPANEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+P+L EMG+AYPEL++A+ LIEETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAAEPLMHRLVPSLVAEMGAAYPELVRAQPLIEETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL LLD + ++L G VAFKLYDT G P D+ +D L A+ L G+D F+ Sbjct: 360 QTLANGLRLLDEATGAMKPGDVLPGAVAFKLYDTFGFPYDLTEDALRAQDL-GVDRSGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ++ ARA G G ++++WF + E++G T+F GY Sbjct: 419 AAMAEQKAAARAAWKGSGEKASDEVWFDIAEEFGGTEFTGY------------------- 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ + AIV+ G+ V EA +G +V +V +QTPFY E+GGQ+GD G GD Sbjct: 460 ----VSEEGDGQLLAIVKDGQRVAEAKAGDEVVLVTNQTPFYGESGGQMGDAGRITGDDG 515 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + D K + H V G +RT +L L +D R ++ NHSATHLLH AL Sbjct: 516 LEIAVEDTAKPLGRVHAHRGTVVSGSVRTGDALHLVVDGDRRTRIRANHSATHLLHAALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LGSHV+Q GS + D RFD +H K +T ++ +IE VN I +N V TR+M + Sbjct: 576 NRLGSHVTQKGSLVAADRFRFDFSHPKALTPEDIAAIEAEVNRHIRENDEVTTRLMTPDA 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 AI +GA AL G KY D VRV+S+ +S LCGGTHVS+ G+I L I+SES Sbjct: 636 AIEAGAMALFGEKYGDEVRVLSMGKAGRDLGAKSYSVELCGGTHVSALGDIALFKIISES 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ +G+RRIEA+TG+ AR L +DEKLK A+ LK + +V R+ + EE RKL+ Sbjct: 696 AVSSGVRRIEALTGEAARQWLTQRDEKLKEAAAALKTAPDDVPARIAVLVEERRKLEREL 755 Query: 775 AKRKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ K L E +A V F+ ++ +D K L+ ++D + + SG+ ++V Sbjct: 756 AEAKKALALGGGSKAEAAGPEDVAGVKFLPQVVDGLDPKGLRGLVDDAKASLGSGVSVIV 815 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + +ASV VT DL+DR +AVDL + + LGG GGGGRP MAQ GGP+G+K Sbjct: 816 AV-NDGRASVAAGVTADLVDRISAVDLVKAAVAALGGQGGGGRPDMAQGGGPDGDK 870 >gi|291279844|ref|YP_003496679.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1] gi|290754546|dbj|BAI80923.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1] Length = 871 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 367/904 (40%), Positives = 540/904 (59%), Gaps = 42/904 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL++F+ GH +PSSSL+P NDPTL+FTN+GM FK++F G+EK Y Sbjct: 1 MTGKEIREKFLKYFESKGHTRVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGREKRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE +L Sbjct: 61 CSCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKEINLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +LYITVY +D+EAF++W K G+ AD+I R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 121 ADKLYITVYKDDDEAFEIWNKHIGVPADRIYRMDEKDNFWAMGDTGPCGPCSEILIDQGP 180 Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I G + +R++E+WNLVFMQ+ + + LPK SIDTGMGLER+ V+Q+ Sbjct: 181 EIGCGRADCDPYCDCDRHLELWNLVFMQYNRDESGKLNPLPKPSIDTGMGLERVTAVVQK 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +N+D DL K +I+ + +++ Y + + RVI DH R+++FLI+DG+LP+NEGR Sbjct: 241 VPSNFDTDLIKPIIEYAAKLSNKNYGDNEKDDTSLRVIADHARATTFLISDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRAM + ++LG+ E + +C M Y EL+ K + + ++ E+ER Sbjct: 301 GYVLRRIMRRAMRHGKMLGFKESFFYQVCEFVCDFMNDPYIELMDKKSYVSKVVKFEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F KTL+ GL + + +L +++ + G F+LYDT+G P+D++QDI+ G +D++ Sbjct: 361 FNKTLETGLKIAEELLEKYKENKEIPGFEIFRLYDTYGFPVDLLQDIMEDNGYK-LDLVG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F++ +++Q+ RA+ G G I+ L+ ++ T+FIGY+ + Sbjct: 420 FDEEMKKQQERAKNAWAGSGESFIADIYKKLENQF-KTEFIGYENTKS------------ 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V AIV+ +E + E++ D+TPFY E+GGQ+GDTG + Sbjct: 467 -----------ESSVLAIVKDDNETQEISESSEFELILDKTPFYPESGGQVGDTGKIYNE 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +++ D +K + VH + + G ++ + ID + R+ NH+ATHLLH AL Sbjct: 516 NCNIEVLDCKKVGN-LIVHKSKLLSGKIKKGDKVTAVIDVEKRKNTERNHTATHLLHKAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + PD LRFD TH P+ E+K IE VN+ I +N+ V I E Sbjct: 575 QMVLGDHVRQAGSLVAPDRLRFDFTHFAPVDDEEIKKIELLVNENIIKNIEVTKTIKPIE 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +AI GA AL G KY+ VRVV V S LCGG HV TG+I + IVSE+S+ Sbjct: 635 EAIKEGAMALFGEKYDKEVRVVEVPG-----FSKELCGGCHVGRTGDIGIFKIVSEASVA 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+TG A + K A LK + +V ++ E+ E+ + Q K Sbjct: 690 AGIRRIEAVTGLEAVKFTQEINSIAKKSALLLKSNINDVPSKITELQEQLKNTQKELTKL 749 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +LN +I + ++ + + L++ +D + KI+SGI+++ ++ Sbjct: 750 QDKLNASKAEDILSNVKEINGIKVLAIRMDNTEINALRNFVDMAKAKIKSGIVLVGSVNG 809 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K + L VT+DL ++ A D+ + AK+ GGGG GG+P +AQ+GG N K D+A+ + Sbjct: 810 D-KVTFLCGVTKDLTSKYKAGDIVKEIAKITGGGG-GGKPELAQAGGKNPEKIDEALNHI 867 Query: 893 ASFL 896 + L Sbjct: 868 YNIL 871 >gi|158424478|ref|YP_001525770.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] gi|205829980|sp|A8ICW8|SYA_AZOC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158331367|dbj|BAF88852.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] Length = 881 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 440/889 (49%), Positives = 595/889 (66%), Gaps = 33/889 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR++F+++F KNGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSSFIDYFVKNGHEAVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+DL Sbjct: 61 AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEWDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+ A+ LWKK++GL +IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLATVYYDDDVAYDLWKKVAGLPDSRIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R+IEIWNLVFMQ+EQ ER LP+ SIDTGMGLER++ +LQ Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQYEQ-LPGERLNLPRPSIDTGMGLERISALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DL + +I +++T + G +HRVI DHLRSS FL+ADG+LP+NEGRGY Sbjct: 240 THDNYETDLMRAIIAEVQELTNVPSNGPQKASHRVIADHLRSSVFLVADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+P L EMG AYPE+++A+ L ETL E+ RF Sbjct: 300 VLRRIMRRAMRHAQLLGAREPLMHRLVPVLVREMGRAYPEIVRAEALATETLLLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ + L G+VAFKLYDT+G PLD+ +D L RG ++ +F+ Sbjct: 360 RTLERGLSLLEEESAGLVSGARFPGEVAFKLYDTYGFPLDLTEDALRGRG-IEVEREAFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G T+ +WF ++E+ GAT+F+GYD Sbjct: 419 AAMERQKAEARANWSGSGEAATDTVWFGVREREGATEFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V+A+VQ+G+ V E +G + VV +QTPFY E+GGQ+GD+G G+G+ Sbjct: 461 -----TETAEGAVRALVQEGKEVSELPAGARGFVVLNQTPFYGESGGQVGDSGLVSGEGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + + QKK +FVH V G L+ L L +D+ R + NHSATHLLH AL Sbjct: 516 KACVLNTQKKLGDVFVHDVEVTEGTLKIGTPLALEVDHARRSAVRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + PD LRFD +H KP+T+ EL +ED N + +N PV TR+M +DA Sbjct: 576 VLGDHVAQKGSLVAPDRLRFDFSHPKPLTADELAQVEDIANTYVLRNEPVETRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +ASGA AL G KY D VRVVS+ + +G S LCGGTHV TG+I ++ ++++S + Sbjct: 636 VASGARALFGEKYGDEVRVVSMGTDSGNGAPFSVELCGGTHVKRTGDIGIVTVLADSGVA 695 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RR+EA+T AR HL L++ A LKVS V RV + EE RKL+ A+ Sbjct: 696 AGVRRLEALTATAARRHLNAASTALQTTAGTLKVSTAEVEARVAALVEERRKLERDLAEA 755 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L + + ++ ++ IS D K+LK+++D + KI SG++ + + Sbjct: 756 RKKLAMGGGGESGPAVIEVNGTRYLRIAISGADPKDLKAIVDEGKTKIGSGVVAVANTAA 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K ++++ VT DL +F+A L R+ +VLGG GGGGRP MAQ GGP+ Sbjct: 816 DGKGALVVGVTADLAGKFDAQKLVRIGVEVLGGKGGGGRPDMAQGGGPD 864 >gi|58040217|ref|YP_192181.1| alanyl-tRNA synthetase [Gluconobacter oxydans 621H] gi|81556989|sp|Q5FQ21|SYA_GLUOX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58002631|gb|AAW61525.1| Alanyl-tRNA synthetase [Gluconobacter oxydans 621H] Length = 879 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 432/903 (47%), Positives = 584/903 (64%), Gaps = 32/903 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR+ FLE+F GH ++PS+SL+P NDPTL+FTN+GMVPFKN+FTGQE Y Sbjct: 1 MTSTNDIRSAFLEYFGSQGHRIVPSASLVPQNDPTLLFTNAGMVPFKNVFTGQETRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW LLT++F L Sbjct: 61 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWTLLTRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY EDE+A LWKKI+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLATVYAEDEDAADLWKKIAGLSDDRIIRIGTSDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG P E+G+R++EIWNLVFMQF Q R LP+ SIDTGMGLER A ++Q Sbjct: 181 DSVFGGPPGSPDEDGDRFVEIWNLVFMQFLDQPDGSRDALPRPSIDTGMGLERFAAIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI+AS ++ +G +HRV+ DHLRS++FLIADG+LP+ EGRGY Sbjct: 241 KRDNYDTDTMRALIEASAEIMHQDADGPFKASHRVVADHLRSTAFLIADGVLPSKEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G EP+ LLPAL +MG+AYPEL+Q + LI +T++ E+ERF Sbjct: 301 VLRRIMRRAMRHLHIMGAKEPVFYRLLPALIQQMGAAYPELVQHQALIAQTMKGEEERFT 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL L LG E L GDVAFKLYDT G PLD+ QD L +G +D F Sbjct: 361 ALLERGLTLLSDELDRLGDKEALPGDVAFKLYDTFGFPLDLTQDALREKGRT-VDEAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR RARA +G G E +WF ++K+G ++F+GY Sbjct: 420 TAMAEQRKRARAAWVGSGDAAAETVWFDARDKHGPSEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ + V+ I + + + A +G V ++ +QTPFY E+GGQ+GD G G Sbjct: 461 ----VSEKADAEVQGIFRGNDELASAPAGDDTVAILLNQTPFYGESGGQVGDHGTLTAPG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R++ITD QK+ + VH+ V G L+ M++ ID+ R + +HSATHLLH AL Sbjct: 517 VRVEITDTQKRNGDLIVHYGKVVEGTLKPGMAVHAEIDHARRTAVRGHHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +G+HV+Q GS P+ LRFD++ +P+T EL ++E VN I +N PV TR+M +E+ Sbjct: 577 RQIGTHVTQKGSLNAPERLRFDISQPRPLTDEELAAVEAEVNARIRENAPVETRLMTQEE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+A GA AL G KY D VRVVS+ D +S LCGGTHV GEI IVSES + Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGKGDDDRPAYSIELCGGTHVGRVGEIGPFRIVSESGV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEA+ G A + + + +LK +A LKV + RV + EE + L Q+ Sbjct: 697 SAGVRRIEAVCGLAAEALALETESRLKQIADLLKVPVADAASRVAALLEERKSLTAQVSD 756 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +RKL + I + + + +V KELK + +++ K+I SG++ L+ S + Sbjct: 757 LQRKLATGEGTSATESINGITLSARDLGDVSPKELKGLAESISKQIASGVVALMS-SADG 815 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + S++I VT+DL DR +AV L R ++ ++GG GGGGRP MAQ+GGPN + D A + Sbjct: 816 RGSIVIAVTKDLTDRLDAVKLVREASALMGGKGGGGRPDMAQAGGPNADS-DAVFAMLRK 874 Query: 895 FLK 897 L+ Sbjct: 875 TLE 877 >gi|254465088|ref|ZP_05078499.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I] gi|206685996|gb|EDZ46478.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I] Length = 883 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 430/896 (47%), Positives = 572/896 (63%), Gaps = 39/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F KNGHE++ SS L+P NDPTLMFTNSGMV FKN FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKNGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVETREYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEFD+ Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TVY D+EAF++WKK G+ D+IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKK-MGVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGTMVDLDMQSIDTGMGLERIAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLF+ LI+AS T G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 240 THDNYETDLFRSLIEASANATNTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P+L +MG+AYPEL Q + LIEET E+ RF Sbjct: 300 VLRRIMRRAMRHASLLGANDPVMHKLVPSLVQKMGAAYPELGQGQALIEETFEQEETRFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD + LGK ++L G+ AFKLYDT+G PLD+ QD L A+ +D F+ Sbjct: 360 KTLDRGLKLLDEASAGLGKGDVLPGETAFKLYDTYGFPLDLTQDALRAK-EIEVDTGGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG K++F + + G T F+GY+ Sbjct: 419 AAMKAQKEQSRAGGIGLGEAADVKVYFDIVDAAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV+ G ++ A G V+++ +QTPFY E+GGQ+GD+G G Sbjct: 461 -----TEKAEGQIVAIVKDGAQLQSAAKGDTVQIILNQTPFYGESGGQVGDSGVLTVAGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK EG+F+H A V G + + +D+ R ++ NHSATHLLH AL Sbjct: 516 AARITDT-KKVEGLFLHLAEVTEGEVAVGQGAAMEVDHDRRSKIRANHSATHLLHEALRN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ EL + VND I QN PV TRIM +DA Sbjct: 575 ALGEHVAQKGSLNAADRLRFDFSHNKAMSAEELAKVGAEVNDFIRQNTPVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I I+ + Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRAATGKGHDGDTYSIELCGGTHVKQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A HL + ++ +A+ LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAVEHLEREAGRMAEVAAALKAQPAEVLDRLKAMMDERKALQNE 754 Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K Q+ + + F++ + V K+L+ ++D ++ I SG+I+L+ Sbjct: 755 ISNLKQQIAMGGGSGGGAEAKDVNGKKFLAQALKGVSGKDLRGLIDKHKQNIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + Sbjct: 815 A-EEDGKVAVAAGVTDDLTGEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSG 869 >gi|289662681|ref|ZP_06484262.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669644|ref|ZP_06490719.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 882 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 389/909 (42%), Positives = 532/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GYD Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYDAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG E A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPAERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGAGAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDAVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGYIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|241762269|ref|ZP_04760350.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373172|gb|EER62802.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 930 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 453/914 (49%), Positives = 594/914 (64%), Gaps = 41/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E Y+ Sbjct: 41 MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 100 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L Sbjct: 101 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 160 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF+D Sbjct: 161 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 220 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+VLQ Sbjct: 221 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 280 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEGRGY Sbjct: 281 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 340 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ RF Sbjct: 341 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 400 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL +L+ HL + L G+VAF+LYDT+G P D+ D L AR L +D F+ Sbjct: 401 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 459 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR ARA G G +++IWF + ++ G T+F GY Sbjct: 460 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT------------------ 501 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G IG+ Sbjct: 502 -----AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVIIGNND 556 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH AL Sbjct: 557 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 616 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HVSQ GS ++ + LRFD +H K +T EL +IE VN I N V TR+M E Sbjct: 617 DQLGQHVSQKGSMVSAERLRFDFSHQKALTDQELAAIEAEVNQQILNNSVVTTRLMTPES 676 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A+ +GA AL G KY + VRV+S+ + S LCGGTHVS+ G+I L +IVSE Sbjct: 677 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 736 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK + Sbjct: 737 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 796 Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A + L + + + K+ F+ +I +D K L+ ++D +K I+SG+ Sbjct: 797 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 856 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I L+ + E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+ Sbjct: 857 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 915 Query: 885 ADQAIAGVASFLKK 898 A QA+ V + L+K Sbjct: 916 AAQALEAVKALLEK 929 >gi|119774185|ref|YP_926925.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B] gi|119766685|gb|ABL99255.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B] Length = 900 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 387/909 (42%), Positives = 556/909 (61%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 31 TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 90 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT L + Sbjct: 91 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 150 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY D+EAF +W K G+ A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 151 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 210 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS E+G+R+IEIWN+VFMQ+ +Q+ LPK ++DTGMG+ER++ Sbjct: 211 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 270 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FL+ADG++P+N Sbjct: 271 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSD--LENKSLRVIADHIRSCAFLVADGVMPSN 328 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L MG A EL + ++E+ L++E Sbjct: 329 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 388 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R L +D Sbjct: 389 EEQFARTLERGLGMLDAALADLK-GDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 446 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A+ EQRSRA+A G + + + AT F GY L Sbjct: 447 EEGFNAAMAEQRSRAQAA------GQFSADYNAALKIDTATDFCGYTEL----------- 489 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V A+ + GE V+ A +G + VV D TPFYAE+GGQ+GD G Sbjct: 490 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 537 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +G+ + D QK +GI + G ++ SL +D + R + +NHS THLLH Sbjct: 538 LAEGVEFNVADTQKFGQGIGHK-GQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 596 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + ELK++ED VN I +N + M Sbjct: 597 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 656 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 657 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 711 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ R+L+ + Sbjct: 712 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 771 Query: 775 AKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K + +I V + + V++ L+ + D L++K++SG+++L Sbjct: 772 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLAI 831 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + K +++ VT+DL + A +L + A + GG GGGRP MAQ+GG K D A+ Sbjct: 832 GSGD-KVNLIAGVTQDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPAKLDGAL 889 Query: 890 AGVASFLKK 898 A V +L + Sbjct: 890 ASVVPWLNE 898 >gi|331006892|ref|ZP_08330140.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989] gi|330419292|gb|EGG93710.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989] Length = 877 Score = 889 bits (2298), Expect = 0.0, Method: Composition-based stats. Identities = 386/915 (42%), Positives = 535/915 (58%), Gaps = 58/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + IR FL FF+ +GH +L SSSL+P NDPTL+FTN+GMV FK++F G +K YQ Sbjct: 1 MNSADIRDAFLRFFETHGHTVLNSSSLVPNNDPTLLFTNAGMVQFKDVFLGSDKRDYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT Sbjct: 61 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHYAWTFLTSPDWMG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + +L +TVY +D+EA+ LW K GL A+KII I N DNFW+M +TGPCGPC Sbjct: 121 IPAEKLTVTVYADDQEAYDLWHKDIGLPAEKIIHIGDNKGGKYQSDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GGLP E+G+R+IEIWN+VFMQF + LPK S+DTGMGLE Sbjct: 181 TEIFYDHGEDIWGGLPGTPEEDGDRFIEIWNIVFMQFNRSADGSMAPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ V+Q NNYDIDLF+HL+ AS +TG + + RVI DH+RS +FLI DG++ Sbjct: 241 RISAVMQGVHNNYDIDLFQHLLNASATITGAQ--NTEHKSLRVIADHIRSCAFLIIDGVM 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG + L+ AL MG+AYPELI+ + IE+ L Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGHKLGQQQAFFYQLVSALVEIMGTAYPELIKQQKHIEKVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCA 407 E+++F KTL++GL +L+ VL + G+ F LYDT+G P D+ DI Sbjct: 359 LLEEQQFEKTLEKGLSVLESVLDSAEFTASASTQIPGETIFTLYDTYGFPTDLTNDIARE 418 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 R L +D+ + + +E QR+RARA G + S E G+TQF GYD + G Sbjct: 419 RELT-LDMPGYEKCMEAQRTRARAA------GKFSVDYSSSVELEGSTQFSGYDSVNG-- 469 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + + Q V+ G + +V T FYAE+GGQ Sbjct: 470 ---------------------EGNIIGLYQNAIPVDTLKEGDEGVIVLSNTSFYAESGGQ 508 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G + DG ++ D QK +H V G + +D R+ +NH Sbjct: 509 IGDSGYIVFDGGHFEVQDCQKNGSH-HLHIGKVLSGEFSVGNGVSTRVDSDVRQATVLNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL ILG HV Q GS + + LRFD +H + ++ EL IE VND I N Sbjct: 568 SATHLMHAALRKILGEHVVQKGSLVDSEKLRFDFSHLQALSGDELARIETMVNDEIRHNT 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + E A A GA L KY D VRV+S+ S LCGG HV TG+I + Sbjct: 628 TVAVDHCDMEQAKAKGAMMLFDEKYGDEVRVLSMGD----GFSIELCGGVHVQQTGDIGV 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 +IV+ES I +G+RRIEA+TG++A S L+ + +A +K + N V ++E++ + Sbjct: 684 FHIVAESGIASGVRRIEAVTGKKALSRLLSYKQSTDQIAQLVKANSSNAVEKIEQLVVQL 743 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ + A + +L D + +IA VN ++H + + D K L+ + DAL+ ++++ Sbjct: 744 KEQEKAIASMQAKLASADSGDLLKNIKQIAGVNVLAHHVVDGDGKILRDMADALKSQLEN 803 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + +LV ++ K S+L VT+DL +F A DL R A ++ GG GGGRP MAQ GG + Sbjct: 804 SVYLLV-TNQGDKVSLLAGVTKDLTAQFKAGDLMREVAPLV-GGKGGGRPDMAQGGGTDP 861 Query: 883 NKADQAIAGVASFLK 897 + V +++ Sbjct: 862 TGIQAVLDKVEQWVQ 876 >gi|27364961|ref|NP_760489.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6] gi|29611879|sp|Q8DC49|SYA_VIBVU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|27361107|gb|AAO10016.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6] Length = 860 Score = 889 bits (2298), Expect = 0.0, Method: Composition-based stats. Identities = 379/906 (41%), Positives = 538/906 (59%), Gaps = 59/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W + G+ AD+IIRI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ ++ G + + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEAMGSAADELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + ++F GY + Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNAKIKVDAQSEFCGYTSTQER------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V A+ +GE +G K V+ +TPFYAE+GGQ GD+G Sbjct: 467 -----------------SDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + Q+ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFQVEDTQKLGN-AIAHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q A + + + + + +E ++L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQ-------ARKFEEKLQDAANKAKSLEKEIQQLKD 736 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A + ++ +IA V + + D+K L+ ++D L+ ++ SGIIML ++ Sbjct: 737 KLASQASANLIDQ--VKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGNVA- 793 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + + A+A V Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852 Query: 893 ASFLKK 898 +++ + Sbjct: 853 DAWIAE 858 >gi|166712451|ref|ZP_02243658.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 882 Score = 889 bits (2298), Expect = 0.0, Method: Composition-based stats. Identities = 390/909 (42%), Positives = 536/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPT 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSTDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFECAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGRL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALRDVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L + +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDCVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AS-GGKVALVSGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|254510259|ref|ZP_05122326.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11] gi|221533970|gb|EEE36958.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11] Length = 890 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 436/914 (47%), Positives = 564/914 (61%), Gaps = 44/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E YQ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPEAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGAMVELDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P L MG+ Y EL QA+ LIEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPIMYQLVPTLVQLMGAQYSELGQAQPLIEETLLLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELAGLPAGDPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + + GAT F+GYD Sbjct: 419 AAMAEQKAKARAAWAGSGESADQVVWFDVLDTAGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G +V+ G +V +QTPFY EAGGQ+GDTG Sbjct: 461 -----TEKAEGQIAALVVDGVLVDSIEQGGSGWIVVNQTPFYGEAGGQVGDTGEIRRLDA 515 Query: 540 RLQ----ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R + ++ H V+ G + ++ L +D+ R + NHSATHLLH Sbjct: 516 RDDVARVEDTRKFAEGKVYAHKVTVDHGAISKGDAVELEVDHARRTAIRANHSATHLLHE 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS D LRFD +HSK +T E+K +E VN I QN V TRIM Sbjct: 576 ALRETLGDHVAQRGSLNASDRLRFDFSHSKALTLDEMKKVEREVNAFIRQNSTVETRIMT 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709 +DA GA AL G KY D VRVVS+ +DG S LCGGTHV TG+I Sbjct: 636 PDDARELGAQALFGEKYGDEVRVVSMGKATTGKGQDGETWSIELCGGTHVRQTGDIGTFV 695 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ +S+ AG+RRIEA+TG A +L QD +L ++A LK +VV RV+ + +E + Sbjct: 696 VLGDSASSAGVRRIEALTGDEAFKYLSAQDHRLGTIALELKAQPDDVVTRVKSLLDERKA 755 Query: 770 LQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 LQ A+ + L + + V FM+ ++ V K+L +++D + ++ S Sbjct: 756 LQNEVAQLRRDLAMAGGAGQGGGSEARDVNGVAFMAQSLTGVSGKDLPALIDEHKSRLGS 815 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+++L+ KA+V VT DL D+ +AVDL R + LGG GGGGRP MAQ GG + Sbjct: 816 GVVLLIA-DTGGKAAVAAGVTADLTDQLSAVDLVRAAVAELGGKGGGGRPDMAQGGGKDA 874 Query: 883 NKADQAIAGVASFL 896 + AD AI L Sbjct: 875 SNADAAIRAAEQVL 888 >gi|260433747|ref|ZP_05787718.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157] gi|260417575|gb|EEX10834.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157] Length = 890 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 432/902 (47%), Positives = 563/902 (62%), Gaps = 44/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGLETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P L MG+ Y EL +A+ LIEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAEDPVMHRLVPTLVQLMGAQYSELGRAQALIEETLLLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD ++ L D L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDEEVAGLPDDAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + + GAT F+GY+ Sbjct: 419 AAMAEQKAKARAAWAGSGEAADQAVWFDVLDAAGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+++ G +VE+ G+ +V +QTPFY EAGGQ+GDTG Sbjct: 461 -----TEKAEGQVLAVIRDGALVEKLEPGESGWIVSNQTPFYGEAGGQVGDTGVIRRLED 515 Query: 540 R----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R L + + H VERG+ + L +D+ R + NHSATHLLH Sbjct: 516 RDEVALVEDTKKFADAKVIAHKVTVERGVFAKGEPVELEVDHARRSAIRANHSATHLLHE 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS D LRFD +H+K +T E++++E VN I QN PV TRIM Sbjct: 576 ALRETLGEHVAQRGSLNAADRLRFDFSHTKAMTPEEIETVEREVNAFIRQNSPVETRIMT 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709 +DA GA AL G KY D VRVVS+ DG S LCGGTHV TG+I Sbjct: 636 PDDARKLGAQALFGEKYGDEVRVVSMGKAPTGKGHDGETWSIELCGGTHVRQTGDIGTFV 695 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I+ +S+ AG+RRIEA+TG A +L QD +L +AS LK +VV RV+ + +E + Sbjct: 696 ILGDSASSAGVRRIEALTGDAALEYLSTQDRRLAQVASELKAQPEDVVTRVKALLDERKA 755 Query: 770 LQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 LQ A+ + +L + + F++ +S V K+L +++D + ++ S Sbjct: 756 LQNEVAQLRRELAMAGGAGQANGAVAKDVNGIKFLAQALSGVSGKDLPALIDEHKTRLGS 815 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G ++L+ KA+V VT DL + +AVDL R + + LGG GGGGRP MAQ GG + Sbjct: 816 GAVLLIA-DSGGKAAVAAGVTSDLTQKISAVDLVRAAVQELGGKGGGGRPDMAQGGGRDP 874 Query: 883 NK 884 + Sbjct: 875 SN 876 >gi|303257717|ref|ZP_07343729.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47] gi|331000999|ref|ZP_08324635.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859] gi|302859687|gb|EFL82766.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47] gi|329569774|gb|EGG51538.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859] Length = 875 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 373/914 (40%), Positives = 541/914 (59%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR+TFL+F + GH ++ SS ++P +DPTL+FTN+GM FK+++ G +K Y Sbjct: 1 MFTASEIRSTFLKFMESKGHTIVASSPVVPGDDPTLLFTNAGMNQFKDVYLGFDKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKNAWELLTEHFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW M +TGPCGPCS Sbjct: 121 PPEKLWVTVYAEDDEAYNIWNKEVGIPADRIVRIGDNKGARFASDNFWMMGDTGPCGPCS 180 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G + GG P E+G+RY+EIWNLVFMQF + K LP+ S+DTGMGLER Sbjct: 181 EIFYDHGPSVAGGPPGSPDEDGDRYMEIWNLVFMQFNRDEKGVMHKLPRPSVDTGMGLER 240 Query: 233 MATVLQEKTNNYDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289 ++ VLQ +NY+IDLF++L++A + G + N + +VI DH+R+ +F+IADG Sbjct: 241 ISAVLQGVHSNYEIDLFQNLMKAVIDEVKAAGAEDVDPNSPSVKVIADHIRACTFIIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P NEGR YVLRRI RR M + LG + +L+ A+ EMG YPE+ I+E Sbjct: 301 VVPGNEGRSYVLRRIARRGMRHGFKLGARKLFFSNLVKAVAKEMGDQYPEIRNP--HIQE 358 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 LR E+ RF +TL +GL +L+ L+ +IL GDVAFKL+DT+G P+D+ D+ + Sbjct: 359 VLRQEEVRFSQTLSKGLDILNEALAS--GTKILGGDVAFKLHDTYGFPVDLTADVCREKN 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ +E+QR +ARA + L+ + T+F+GYD L Sbjct: 417 -VSVDFEGFDALMEKQREQARAKGKFKMAQG-------LEYEGKPTEFLGYDTLTVQAC- 467 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V+AI + GE V++A +G +V VVFD+TPFYAE+GGQ+G Sbjct: 468 ---------------------RVEAIYKDGEPVKDAEAGDEVVVVFDRTPFYAESGGQMG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G L++ D K +F H V G ++ +D +NR + NHS Sbjct: 507 DKGTFKNKTTILKVDDTFKIKANVFGHMCYVAEGEVKVGDLFSAQVDEENREATARNHSV 566 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL +LG+HV Q GS + D RFD H+ P+T ++ +ED VN I +N P Sbjct: 567 THLMHKALREVLGAHVQQRGSMVNGDRTRFDFVHTSPMTREQINEVEDIVNKEILRNAPT 626 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 TR+M ++A + A L G KY + VRV+++ S LCGGTHV TG+I + Sbjct: 627 QTRVMPIDEAKKTNAVMLFGEKYGENVRVLNIGS------SCELCGGTHVQRTGDIGMFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I+SES I AG+RR+EA+TG A + Q+E ++ +A LK VV +V + E ++ Sbjct: 681 IISESGISAGVRRVEAVTGMAALHYAQNQEEIIREVAEELKAPALEVVSKVVDTVEHLKR 740 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + K++ + + V + + +++KEL++ +D L+ +++SG+ Sbjct: 741 TEKDLNALKVKFAQAGAAHMASQAQDVNGVAVLVTEMKGIETKELRNSVDGLKDQLKSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L+ S++ KAS + VT+DL+ + A D+ + A+ L GG GGGRP AQ GG Sbjct: 801 IVLI-KSEDGKASAAVGVTKDLVGKIKAGDVMKFVAEQL-GGKGGGRPDFAQGGGAAPAD 858 Query: 885 ADQAIAGVASFLKK 898 + + +F+ + Sbjct: 859 MNALLGKTRTFITE 872 >gi|297717784|gb|ADI50035.1| alanyl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13] Length = 865 Score = 888 bits (2295), Expect = 0.0, Method: Composition-based stats. Identities = 433/891 (48%), Positives = 594/891 (66%), Gaps = 34/891 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F++N HE++ SSSL+P NDPTL+FTN+GMV FK++FTG EK Y Sbjct: 1 MRTLADIRSTFLNYFKENRHEVVASSSLVPANDPTLLFTNAGMVQFKDVFTGLEKRSYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI LAW+L+TK F L Sbjct: 61 ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIYLAWNLVTKNFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY EDEEA LWKKI+G KIIRI T+DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 SPERLLVTVYHEDEEAANLWKKIAGFPDHKIIRIATSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS ++G+R+ E WNLVFMQFEQQ R LPK S+DTGMGLER AT+LQ Sbjct: 181 ESIAGGPPGSADQDGDRFTEFWNLVFMQFEQQADGTRINLPKPSVDTGMGLERFATILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD DLFK LI+AS ++TG + +H VI DHLR+SSFL+ADG++P+NEGRGY Sbjct: 241 VHNNYDTDLFKSLIEASTELTGTQAAAY-RHSHNVIADHLRASSFLLADGVMPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+ L MG+AYPEL +A+ +I+E L+ E+ERF Sbjct: 300 VLRRIMRRAMRHAHLLGAKEPLMYRLVDRLVEVMGTAYPELTRAQAMIKENLKLEEERFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ + L + L+G++AFKLYDT+G PLD+ QD+L ++ + +D+ FN Sbjct: 360 QTLERGLRLLEEETAKLAPTQALSGEIAFKLYDTYGFPLDLTQDVLRSQDRS-VDLEGFN 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q++ ARAH G G E++WF +++++GA++F+GY+ Sbjct: 419 AAMAAQKAAARAHWSGSGEKKDEQVWFDIQQEFGASEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + ++V+AIV + V +GQ ++VF+QTPFYAE+GGQ GD G Sbjct: 461 -----SETAEALVQAIVVNSQTVAHLSAGQTGDIVFNQTPFYAESGGQEGDQGVIHFANG 515 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ + K + VHH +E G ++ + L ++ Q R+ L +HSATHLLH AL Sbjct: 516 AQARVLNTNKHLGSLHVHHVTLESGRIKVGETAKLVVNGQRRQGLRAHHSATHLLHAALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + D LRFD TH+KP+T+ E+K+IE VN I N + T +M E+ Sbjct: 576 RHLGGHVTQKGSLVAADRLRFDFTHTKPLTAEEIKAIEQEVNLQILANTAIETHLMAAEE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AIASGA AL G KY D VRV+ + DG +S LCGGTH S TG+I L+ I+SE+ + A Sbjct: 636 AIASGAMALFGEKYGDEVRVLKMGQCDGAAYSIELCGGTHASRTGDIGLVKILSEAGVSA 695 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RR+EAI G A +L E++ L+ LK + +++ + +E + + A + Sbjct: 696 GVRRLEAIAGIAALDYLRSLQEQISKLSFTLKCPSVEIPEKIDLLLQERKTFERQLADLR 755 Query: 779 LQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 ++ + S +I +N ++ + ++ +K+LK ++D L+ +++SG+I+L + Sbjct: 756 QKMALGGSSGTTVAGLKQIGHINVLTKNLVDIPAKDLKPLVDQLKTEVKSGVIILTSVV- 814 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 E K +++I VT DL D+ NAVDL R ++VLGG GGGGRP MAQ+GG N Sbjct: 815 EDKVALVIGVTADLTDKVNAVDLVRAGSEVLGGKGGGGRPDMAQAGGSNPT 865 >gi|283856345|ref|YP_162580.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] gi|59802972|sp|Q9RNN8|SYA_ZYMMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|283775342|gb|AAV89469.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 890 Score = 888 bits (2295), Expect = 0.0, Method: Composition-based stats. Identities = 451/914 (49%), Positives = 592/914 (64%), Gaps = 41/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E Y+ Sbjct: 1 MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF+D Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+VLQ Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL +L+ HL + L G VAF+LYDT+G P D+ D L AR L +D F+ Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR ARA G G +++IWF + ++ G T+F GY Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G G+ Sbjct: 462 -----AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH AL Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HVSQ GS ++ + LRFD +H K ++ EL +IE VN I N V TR+M E Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A+ +GA AL G KY + VRV+S+ + S LCGGTHVS+ G+I L +IVSE Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK + Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756 Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A + L + + + K+ F+ +I +D K L+ ++D +K I+SG+ Sbjct: 757 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I L+ + E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+ Sbjct: 817 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875 Query: 885 ADQAIAGVASFLKK 898 A QA+ V + L+K Sbjct: 876 AAQALEAVKALLEK 889 >gi|261253947|ref|ZP_05946520.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891] gi|260937338|gb|EEX93327.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891] Length = 860 Score = 888 bits (2295), Expect = 0.0, Method: Composition-based stats. Identities = 376/911 (41%), Positives = 533/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W + G+ AD+I+RI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G + + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHED--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGY------------ 460 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S V I +GE E +G K ++ +TPFYAE+GGQ GD G Sbjct: 461 -----------AGTQGNSNVAEIFVEGEAAESLSAGDKAIIILSETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFKVEDTQKLGN-AIAHHGVLAEGVLAKGDEVEAVVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD ++ + +T AELK +E VN + +N + T Sbjct: 569 LHAALRQVLGEHVAQKGSLVKPENLRFDFSNLEAVTPAELKEVERLVNAQVRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q K + ++ E ++ + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEEQQAKYEE--------------KLVESAQKAKSLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K ++ + I + + D+K L++++D ++ ++ SG+I+L Sbjct: 730 EIQKLKDKMAAAESANIMGKVQDINGTKVLVAALEGADNKNLRTMVDDIKNQVGSGVILL 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 790 ANI-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPD 847 Query: 888 AIAGVASFLKK 898 AI V +L++ Sbjct: 848 AIQSVQPWLEE 858 >gi|85858185|ref|YP_460387.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB] gi|123515492|sp|Q2LPL7|SYA_SYNAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|85721276|gb|ABC76219.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB] Length = 878 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 383/903 (42%), Positives = 540/903 (59%), Gaps = 41/903 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +FL FF+ GH + SSSLIP +DPTL+FTN+GMV FKN F G E Y + Sbjct: 6 SEIRESFLRFFEGKGHTRVSSSSLIPKDDPTLLFTNAGMVQFKNAFLGLEDRGYSRAASC 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L + R Sbjct: 66 QKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKREAIAWAWEYLTEVIQLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ +D+EA+++W + + AD+I+R+ NFW M ETGPCGPCSEI +DQGE Sbjct: 126 LWVTVFQDDDEAYRIWLEEMRIPADRIVRLGEKSNFWMMGETGPCGPCSEIIYDQGEGTG 185 Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P +RY+EIWNLVF QF++ LPK +IDTGMGLER+A V Q + Sbjct: 186 CGRPDCHIECGCDRYLEIWNLVFTQFDRDEAGILTPLPKPNIDTGMGLERLAAVAQGVKS 245 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DLF L+ A + TG Y + V+ RVI DH RS +FLI DGILP+NEGRGYV Sbjct: 246 NYDTDLFAPLLAAISRTTGKPYGKNEEDDVSLRVIADHARSVAFLIGDGILPSNEGRGYV 305 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + +LLG +P + L P + M YP+L+ K I + + +E++RF + Sbjct: 306 LRRILRRAARHGKLLGLNQPFLHELTPVVIEAMKETYPDLLDKKSYITKVILNEEQRFME 365 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD GL +L +S L K + GDV F+LYDT G P D+ DI+ L ID F Sbjct: 366 TLDAGLKILQEEVSRLKKAGTTTIPGDVVFRLYDTFGFPTDLTADIVRRDNLT-IDEDGF 424 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A+E QR +AR G G ++ L + +T F+G++ Sbjct: 425 QRAMEVQREKARESWKGSGEEAISALYQKLSTQGISTVFVGHE----------------- 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S + A++Q+ E+V+ G++ E++ +TPFY E GGQ+GDTG G+ Sbjct: 468 -----GVCNAQSQITALLQKEELVDSLAEGEEGELIVAETPFYGEIGGQIGDTGTIEGED 522 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ D ++ + + H V +G R S+ L + RR NHSATHLL A+ Sbjct: 523 FVFEVLDTRRPLDNLISHVGRVIKGRGRKGDSVNLIVAEDKRRATEANHSATHLLQAAMK 582 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 T++G+H+ Q+GS +T + LRFD TH I EL+ IE+ N +I +NLPVVTR++ E+ Sbjct: 583 TVMGNHIKQSGSLVTAERLRFDFTHFSKIEENELEQIENLANAVIRRNLPVVTRVLPLEE 642 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ +GA A+ KY ++VRVV + G S LCGGTH+ TG+I + I+ ES+I A Sbjct: 643 AMKTGATAVFDEKYGEKVRVVRM-----GDFSMELCGGTHIQRTGDIGFIKIIHESAIAA 697 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG+ A +H + +LK A LKVS ++ RVE++ + + + K Sbjct: 698 GVRRIEAVTGREAVNHARRVENELKKAAKLLKVSPFDLGERVEKLIKTQKDQEKEIETLK 757 Query: 779 LQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +L +D + +I + ++ ++ D+K L+ D L+ ++QSGII L+G E Sbjct: 758 GRLAAKDSADLLSQAREIRGIRVLTAAVNAPDAKTLRDFGDKLRDRLQSGII-LIGSKAE 816 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 KA +L +VT+DL DR++A + R A V+ GG GGGRP MAQ+GGP ++A+ + Sbjct: 817 GKAMLLCLVTKDLTDRYSAGSIIREIAPVV-GGKGGGRPDMAQAGGPEPENLERALKHLE 875 Query: 894 SFL 896 + Sbjct: 876 EMI 878 >gi|66046785|ref|YP_236626.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a] gi|63257492|gb|AAY38588.1| Alanyl-tRNA synthetase, class IIc [Pseudomonas syringae pv. syringae B728a] Length = 899 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 26 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 85 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 86 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 145 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 146 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 205 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 206 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 265 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 266 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 323 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 324 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 383 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 384 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 442 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 443 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 489 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 490 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 532 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 533 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 591 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 592 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 651 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 652 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 707 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 708 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 767 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 768 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 827 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 828 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 885 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 886 SALALAVPFVEQ 897 >gi|163802982|ref|ZP_02196869.1| alanyl-tRNA synthetase [Vibrio sp. AND4] gi|159173272|gb|EDP58100.1| alanyl-tRNA synthetase [Vibrio sp. AND4] Length = 865 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 380/915 (41%), Positives = 539/915 (58%), Gaps = 72/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LTK L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTKTLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +T+Y+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTIYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+E FG+TL+RG+ +L+ L ++ ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARER 420 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F +A+EEQR RAR G + + + T+F GY +G Sbjct: 421 EF-VIDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDAQTEFCGYTGTKG--- 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 SS V A+ +G V +G K +V +TPFYAE+GGQ Sbjct: 471 --------------------SSSVAAMFVEGNEVASLSAGDKAIIVLGETPFYAESGGQC 510 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + ++ D QK HH I+ G+L + + +D + R +S+NHS Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGN-AIAHHGIMAEGVLAKDDEVATIVDAERRAAISLNHS 569 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + DGLRFD +H + +T+AELK +E VN + +N Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQVRRNHT 629 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SE I AGIRRIEA+TG+ A + Q K + ++ E ++ + Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQTTKYEE--------------KLAESAQKAK 730 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ K + ++ + I + + DSK L++++D ++ ++ SG Sbjct: 731 SLEKEIQKLQDKMAAAESANIMGKVQDINGTKALIAALEGADSKNLRTMVDDIKNQVGSG 790 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 791 VILLANVNGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVA 848 Query: 884 KADQAIAGVASFLKK 898 +A+ V +L++ Sbjct: 849 ALPEAMKSVQPWLEE 863 >gi|302189037|ref|ZP_07265710.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642] Length = 874 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERDLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G R ++D K F+HH +V G L + + + R ++NHSATH Sbjct: 508 GFLQGGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGTQVETQVSDEVRNATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHARRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|325924500|ref|ZP_08186019.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865] gi|325544995|gb|EGD16330.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865] Length = 882 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAISWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIQESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLIPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGVAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQATVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S E++ G AF+L+DT+G P+D+ DI RGL +D Sbjct: 366 EERFAETLDAGMKIFDDVASRA--QEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVERADAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ + I D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGTGVSIDIADTQKFAGQFHGHVGRITEGALALGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 ASA-GKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 DGVHSWVKQ 879 >gi|294788161|ref|ZP_06753404.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453] gi|294483592|gb|EFG31276.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453] Length = 873 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 389/912 (42%), Positives = 548/912 (60%), Gaps = 58/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R +L+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKYLQFFESKGHQIVRSSSLVPHNDPTLLFTNAGMNQFKDVFLGFDKRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIHYAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L +TVY ED+EA+ +W K GL +KI+RI N DNFW M +TGPCGPC Sbjct: 121 LPKEKLLVTVYAEDDEAYNIWHKEIGLPENKIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 TEIFYDHGEHIWGGIPGSPEEDGDRWIEIWNNVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF++L++A + TG++ ++ + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQGVHSNYEIDLFQNLLKAVARETGVE-FSMDVPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG + L+P L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGDAYPELREKQTQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+VLL+ LS K LNG++ FKLYDT+G P D+ DI R Sbjct: 360 KAEETRFAQTLETGMVLLENALSGSLKR--LNGEIIFKLYDTYGFPYDLTADICRER-EV 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D FN+A++EQR+RARA K L TQF GY Sbjct: 417 EMDEDGFNKAMDEQRARARAAQNF-------KANTQLDYNGQDTQFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V++ V A+ + E V E G+ +V DQTPFYAE+GGQ+GD Sbjct: 461 --------------RKVNATVIALYKDSEAVTELHEGETGAIVLDQTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++ D QK +F + G L+ S++ ID R NHSATH Sbjct: 507 GYILAGENRFEVRDTQKIKAAVFGQFGVQVSGSLKVGDSVLAEIDNDIRDANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS +T + RFD++H++ IT E+ +E VN I N+ V Sbjct: 567 LMHKALREVLGNHVEQKGSLVTAESTRFDISHNQAITPEEIAEVERRVNTAILANVAVDA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + G S+ LCGGTHV+ TG+I L I+ Sbjct: 627 NIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GEFSTELCGGTHVARTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SES I AG+RR+E ITG A Q+ LK++ S +K +V+ +++ + + L Sbjct: 682 SESGIAAGVRRLEVITGLNALRWAQNQETLLKNIISEVKAQTEKDVLSKIQANANQTKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + + V+ + I + ++ L+ ++ L K ++ Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGTVSLVVAQI-DAEASALRDIVTDLTGKSDKAVV 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTAKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858 Query: 886 DQAIAGVASFLK 897 + +A V +++ Sbjct: 859 PETLASVENWVN 870 >gi|330981768|gb|EGH79871.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 874 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|85703236|ref|ZP_01034340.1| alanyl-tRNA synthetase [Roseovarius sp. 217] gi|85672164|gb|EAQ27021.1| alanyl-tRNA synthetase [Roseovarius sp. 217] Length = 892 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 435/895 (48%), Positives = 574/895 (64%), Gaps = 40/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPTLNEIRSTFLSFFERNDHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHREYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA +WKK +GLS D+IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAATIWKKYAGLSDDRIIRIKTDDNFWSMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 181 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGTMRALDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFL+ADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG A+PEL +A+ +IEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVAQMGQAFPELGRAQAMIEETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD L+ L L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 QTLERGLRLLDDELTALDDSAALPGATAFKLYDTYGFPLDLTQDALREKGRE-VDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + E+ AT F+GYD Sbjct: 420 AAMAEQKAKARAAWSGTGEAADQAVWFDISEQVSATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + V AIV +G+ V+ G V+F+QTPFYAE+GGQ+GD G +G + Sbjct: 462 -----TEVSEAQVVAIVSEGKRVDAIEPGGTGWVIFNQTPFYAESGGQVGDQGRLVGKAV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 I+D +K G+F H + G L MS+ L +D+ R + NHSATHLLH AL Sbjct: 517 SGSISDTKKFPGGLFGHLFTPDEGRLGVGMSVKLEVDHSRRNAIRANHSATHLLHEALRK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++AEL+ +E VN+ I QN PV TRIM +DA Sbjct: 577 ALGEHVAQRGSLNAEDRLRFDFSHAKALSTAELERVESEVNEFIRQNAPVETRIMTPDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I + + Sbjct: 637 RALGAQALFGEKYGDEVRVVSMGAEAGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +++ AG+RRIEA+TG A +L GQ +L +AS LK +V RV+ + +E R L Sbjct: 697 DAASSAGVRRIEALTGAAAFDYLSGQAARLGQVASELKARPEDVADRVKALMDERRALAN 756 Query: 773 IHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A+ + +L + + + V ++ +++ V K+L ++D + ++ SG + Sbjct: 757 EVAQLRRELAMSGGAAQGGTVEARDVGGVKLIAQVMTGVQGKDLPPLIDEHKARLGSGAV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +L+ K +V VT+DL R +AV++ R++ LGG GGGGRP MAQ GG Sbjct: 817 LLIA-DTGGKVAVAAGVTDDLTGRLSAVEMVRVAVVELGGKGGGGRPDMAQGGGT 870 >gi|302389912|ref|YP_003825733.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] gi|302200540|gb|ADL08110.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] Length = 880 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 376/910 (41%), Positives = 550/910 (60%), Gaps = 47/910 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR FL FF+ GH +PSSSL+P NDPTL+FTN+GM FK++F G +K + Sbjct: 1 MMTSSEIREKFLSFFESKGHVRVPSSSLVPYNDPTLLFTNAGMNQFKDVFLGLKKLPFTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLD+VGRT RHHTFFEMLGNFSFG YFK AI AW+ LT+ L Sbjct: 61 ATTAQKCVRAGGKHNDLDSVGRTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTEVLQL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL++++Y+ D+EAF LW++++ + +KIIR+ DNFW+M +TGPCGPCSEI+ D+G Sbjct: 121 PKERLWVSIYENDDEAFYLWQEVANIPPEKIIRLGEKDNFWAMGDTGPCGPCSEIYIDRG 180 Query: 181 ECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E P + +R+ E+WNLVFMQ+ + LP+ SIDTGMGLER+ATV+ Sbjct: 181 EEHRCNSPECKIGVCDCDRWRELWNLVFMQYNRDEHGNLTPLPRPSIDTGMGLERIATVM 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296 Q +NYD DL + +I E +TG KY G+ RVI DH+R+ +FLI+DG+LP NEG Sbjct: 241 QNVYSNYDTDLLRPIIAFVENMTGKKYYGDERGFPFRVIADHIRAITFLISDGVLPGNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 R YVLRRI+RRA + + L P + ++P + + MG AYPE+ + + I+ + E+E Sbjct: 301 RSYVLRRILRRAARFGKELDLNRPFLYKIVPVVVSLMGDAYPEIKKNQDYIQRVTKFEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL+ GL LL ++ L +++ G++AF LYDT+G PLD+ +D+ +G ID Sbjct: 361 RFHETLNDGLKLLFEGMAELEEKNQKVIPGEMAFMLYDTYGFPLDLTEDVAREKGF-NID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F + +E QR +A+A + + T F+GYD L Sbjct: 420 REAFEELMERQRKKAKAARKEEYPVNE---LYEILAPMEPTIFVGYDCL----------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGC 533 + V+ I+ E V EA ++ +V D+TPFY EAGGQ+GDTG Sbjct: 466 ------------STEAQVELIISGKEPVVEADEKAGEIILVLDRTPFYGEAGGQVGDTGI 513 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D Q+ +G H VE+G +R + + ++D RR ++ NHSATHLL Sbjct: 514 IENENFTFRVRDTQRTPDGKIYHIGKVEKGFIRLKERVTASVDEARRRDIARNHSATHLL 573 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD +H +T E+K IED VN I +LPVV Sbjct: 574 HRALKDVLGEHVNQAGSLVAHDRLRFDFSHFAALTEDEIKKIEDLVNKAILDDLPVVVEE 633 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 E+A +GA AL G KY ++VR+VS+ G +S LCGGTHVSST +I L I+SE Sbjct: 634 TTVEEAQKAGAIALFGEKYGEKVRMVSM-----GNYSKELCGGTHVSSTSKIGLFKIISE 688 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 SS+ AG+RRIEA+TG ++ + L S LK ++ +VEE++E ++ + Sbjct: 689 SSVGAGVRRIEAVTGWNLLNYTRENLAIISDLVSLLKSKPQDLTAKVEELFETIKRNERQ 748 Query: 774 HAKRKLQLN---VEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +L VE+++ KI D+N +S + + +L+++ D L++KI+SGI++L Sbjct: 749 VESLRQRLINTRVEEIAAGKILLGDINVISAKVDDASMDDLRNISDVLRQKIKSGIVVLG 808 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S + + ++ VT+DL+++ ++A + + +A+ + GG GGGRP AQ+GG +K +Q Sbjct: 809 STSGD-RVFLVCSVTKDLVEKGYHAGKIVKQAAE-VAGGSGGGRPDFAQAGGKYPDKLEQ 866 Query: 888 AIAGVASFLK 897 A+ +K Sbjct: 867 ALKVAVDVIK 876 >gi|205830247|sp|A1S4E9|SYA_SHEAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 873 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 387/909 (42%), Positives = 556/909 (61%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 4 TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY D+EAF +W K G+ A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS E+G+R+IEIWN+VFMQ+ +Q+ LPK ++DTGMG+ER++ Sbjct: 184 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSD--LENKSLRVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L MG A EL + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L + L+G+ FKLYDT+G P+D+ D+ R L +D Sbjct: 362 EEQFARTLERGLGMLDAALADLK-GDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A+ EQRSRA+A G + + + AT F GY L Sbjct: 420 EEGFNAAMAEQRSRAQAA------GQFSADYNAALKIDTATDFCGYTEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V A+ + GE V+ A +G + VV D TPFYAE+GGQ+GD G Sbjct: 463 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +G+ + D QK +GI + G ++ SL +D + R + +NHS THLLH Sbjct: 511 LAEGVEFNVADTQKFGQGIGHK-GQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + ELK++ED VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ R+L+ + Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 744 Query: 775 AKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K + +I V + + V++ L+ + D L++K++SG+++L Sbjct: 745 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLAI 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + K +++ VT+DL + A +L + A + GG GGGRP MAQ+GG K D A+ Sbjct: 805 GSGD-KVNLIAGVTQDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPAKLDGAL 862 Query: 890 AGVASFLKK 898 A V +L + Sbjct: 863 ASVVPWLNE 871 >gi|88813103|ref|ZP_01128344.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231] gi|88789587|gb|EAR20713.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231] Length = 869 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 372/903 (41%), Positives = 535/903 (59%), Gaps = 47/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F+ N HE++PSSSL+P NDPTL+FTN+GMV FK F G E+ Y Sbjct: 5 KTSAEIRQAFLDYFRANDHEIVPSSSLVPTNDPTLLFTNAGMVQFKETFLGHERRPYSRA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ L Sbjct: 65 ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLQLP 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +RL++TV++ED+EA +W + G++ ++ RI +DNFW+M +TGPCGPCSEIF+D G Sbjct: 125 PQRLWVTVFEEDDEAANIWLEEIGVAPERFARIGAHDNFWAMGDTGPCGPCSEIFYDHGP 184 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS+ +G+R++EIWNLVFMQ+++ LP+ +DTGMGLER+A V+Q Sbjct: 185 EVAGGPPGSAQADGDRFVEIWNLVFMQYDRDEHGRLSALPRPCVDTGMGLERIAAVVQGM 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NN++IDLF HL+ ++ +V G NN + RVI DH+R+ +FLI DG+ P NEGRGYV Sbjct: 245 HNNFEIDLFHHLVHSAARVAGSADLSNN--SLRVIADHIRACAFLIVDGVFPGNEGRGYV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG E L+ L +MG+AYP L Q + E L+ E+ERF + Sbjct: 303 LRRIIRRAIRHGYKLGIEEAFFYRLVSPLVEKMGAAYPALEQGRAQAERILKQEEERFRE 362 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL LL+G L L + + G FKLYDT+G P+D+ DI RGL G+D+ F Q Sbjct: 363 TLEQGLKLLEGDLRRLE-SQTIPGATIFKLYDTYGFPVDLTGDIARERGL-GLDMPGFEQ 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ + + + + G T+F GYD L+ Sbjct: 421 AMA------AQRERARAASAFKVDYKETGDFEGHTEFTGYDHLQD--------------- 459 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 +V A+ +G +G++ V+ D+TPFYAE+GGQ+GD G + + Sbjct: 460 --------QGLVTALYAEGRRRNHLEAGEQGMVLLDRTPFYAESGGQVGDRGWLLASELE 511 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D K G F H +V +G L + +D + R+ +NHSATHLLH AL + Sbjct: 512 FEVWDT-VKYRGAFGHVGVVRQGRLAAGERVSTRVDAERRQATVLNHSATHLLHAALRRV 570 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG H Q GS + PD LRFD TH +P++ +L+ +E VND I N R M+ ++A+ Sbjct: 571 LGEHAQQKGSLVAPDRLRFDFTHFEPVSREQLERVERLVNDRIRANDVADVRYMSYDEAM 630 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRV+ G S+ LCGGTHV TG+I +VSE+ I AGI Sbjct: 631 DFGAVALFGEKYADTVRVMRF-----GEFSTELCGGTHVRRTGDIGFFKLVSETGISAGI 685 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEAITGQ A + +L + L+ S N+ R+E++ + R+L+ A+++ + Sbjct: 686 RRIEAITGQCAVAWAETVSRQLAHVGELLRCSSDNIELRLEQLIDRSRQLEKELARQQQK 745 Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + I V ++ + D++ L+ +D L+ K+ S +++L + E K Sbjct: 746 LASQAGTNLADRAVLIDGVKVLATTVEGGDNRALRDTLDQLKHKLGSAVVVLASVDGE-K 804 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT+D DR A +L A + GG GGGR AQ+GG + + DQA+ VA++ Sbjct: 805 VRLVGGVTKDFTDRLKAGELINAVASQI-GGRGGGRADFAQAGGSDPTQLDQALESVAAW 863 Query: 896 LKK 898 +++ Sbjct: 864 VRE 866 >gi|226952658|ref|ZP_03823122.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244] gi|226836595|gb|EEH68978.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244] Length = 884 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 390/913 (42%), Positives = 530/913 (58%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 8 MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT + Sbjct: 68 VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLG 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY+TVY D+EAF +W K G+ A++IIRI N DNFW+M +TGPCGPC Sbjct: 128 LPKDRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 188 SEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 248 RISAVLQHVNSNYEIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 305 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL Sbjct: 306 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 365 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L ++ G+ FKLYDT+G P D+ DI R L Sbjct: 366 IREEEQFAKTLEQGLKLLEGELAQLK-GNVIAGETVFKLYDTYGFPTDLTADIARERDLT 424 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + S+ + G TQF GYD G Sbjct: 425 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATHG------ 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 472 -----------------QGQIVAIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDT 514 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D ++ D +K FVH IV G L+ S+ T+ R + NHSATH Sbjct: 515 GIFKNDTGIFEVQDTKKSGG-AFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HV Q GS + D LRFD + +P+T +L+ IE VN + N PV T Sbjct: 574 LLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTT 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ + S LCGG HV TG+I L I Sbjct: 634 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEDKNFSIELCGGIHVKRTGDIGLFKI 693 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++++ LK + V +VE + E L Sbjct: 694 TSEGGVAAGVRRIEAVTGTQALEVVQKADTDIQTINGLLKAQKDQTVEKVEAVVETASSL 753 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + +IA + + +D+K L+++ D+++ K++ +I Sbjct: 754 QKQIEQLNQKLASFQAAELLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAVI 813 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S++ V + A D+ + A+ L GG GGG+P +AQ G P K Sbjct: 814 ILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEKF 871 Query: 886 DQAIAGVASFLKK 898 DQ A + ++L++ Sbjct: 872 DQVFAALPAWLEQ 884 >gi|84390150|ref|ZP_00991412.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01] gi|84376804|gb|EAP93679.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01] Length = 860 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 372/911 (40%), Positives = 528/911 (57%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ H+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF +W K G+ ADKI+RI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDD--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +G L+ L MGSA EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E QR RAR G + + + T+F GY G+ Sbjct: 419 IDEEGFEKAMEAQRKRAREA------GQFGTDYNATLKVDTNTEFCGYTATEGA------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ GE V +G K ++ ++TPFYAE+GGQ GD G Sbjct: 467 -----------------GEISALFVDGEEVPSLSAGDKAIIILEETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + +D + R +S+NHSATHL Sbjct: 510 TLKTASGLFKVQDTQKLGN-AFAHHGELVEGVFAQGDKVEAIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q + ++ E ++ + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKSLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ + I+ + I D+K L++++D + ++ SGII L Sbjct: 730 DIQLLKEKMAAAESANIMGKVEDISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 789 IANIADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847 Query: 888 AIAGVASFLKK 898 A+ V ++L++ Sbjct: 848 ALKSVRTWLEE 858 >gi|297569857|ref|YP_003691201.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296925772|gb|ADH86582.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 879 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 388/908 (42%), Positives = 546/908 (60%), Gaps = 41/908 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + IR F+E+F + GH L+ SS L+P DPTL+FTN+GMV FK +FTG+EK Y Sbjct: 1 MNGNEIRQRFIEYFTQRGHTLVESSPLVPHEDPTLLFTNAGMVQFKKVFTGEEKRDYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI++AWD LTKE L Sbjct: 61 VTCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRMAWDFLTKEIGLS 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+++VY++D+EA+ +W+KI L +I+R+ DNFW+M +TGPCGPCSEI DQGE Sbjct: 121 PAKLWVSVYEDDDEAYAIWEKIEDLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGE 180 Query: 182 CIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + +R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+A V Q Sbjct: 181 AVACPEENCGVDCDCDRFLEIWNLVFMQYERDEQGNLTPLPKPSIDTGMGLERIAAVAQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K NNYD DLF+ +IQ + Q+ G+ Y RVI DH R+++FL+ADG+LP+NEGR Sbjct: 241 KINNYDSDLFQPIIQRTCQLAGISYGANLRADTALRVIADHARATTFLVADGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA+ + R LG TEP + + A+ MGSA+ L +++ L+ + +R E+ER Sbjct: 301 GYVLRRIMRRAVRFGRSLGLTEPFLGEVCSAVADGMGSAWGHLGESRELLGKVVRHEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD GL +L + L + I + GD FKLYDT+G P+DI +D+ GL D Sbjct: 361 FLETLDHGLGMLASEIERLQGEGIKTIAGDFIFKLYDTYGFPVDIAKDVAQEEGLQA-DE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A+ QR ++R G G G + L E+ ++F+GY+ R Sbjct: 420 EGFGAAMARQREQSRRSWKGGGLGELGPGFKELLERGVKSRFVGYETRRHHG-------- 471 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++V + Q+GE+ +EA +G V +V D+TPFYAEAGGQ+GD G Sbjct: 472 --------------TLVAVLDQRGELHDEAAAGTLVSLVCDETPFYAEAGGQVGDWGEIA 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G R ++ + K E + VH A V G L ++L + RRQ + +H+ATHLLH Sbjct: 518 GGQGRAKVLNTLKIGEHLVVHQAEVAEGKLAVGAEVLLAVAEGRRRQTAAHHTATHLLHA 577 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + + LRFD TH P++ E++ +E+ VN+ I N + + Sbjct: 578 ALRRVLGEHVKQAGSLVDAERLRFDFTHFSPLSREEIRRVEELVNEEIRANTRLEVATLP 637 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 RE+A+ SGAAAL G KY D VRVV+V G S LCGGTHV +TGEI L I SE Sbjct: 638 REEALQSGAAALFGEKYGDTVRVVAV-----GDFSKELCGGTHVGATGEIGLFKITSEGG 692 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I A RRIE G A S + +++++ A LK + + R++++ ++L+ A Sbjct: 693 IAASTRRIEGCCGGLALSRVHALEDEVQQWAGRLKTNPAELGVRLDKLLARQKELERQLA 752 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + + D ++ + + + K L+ D L+ K+ SGI +L Sbjct: 753 ELAAKASRFDAESVLRQATEVNGIKVATCRLEVDSVKTLREAGDKLRDKMGSGIAVLAAE 812 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K S+L +V++DL DR+ A D+ + +A+++ GG GGGRP MAQ+GG + K D A+A Sbjct: 813 PA-GKVSLLALVSKDLTDRYRAGDIVKQAAQLV-GGSGGGRPDMAQAGGGDPEKIDHALA 870 Query: 891 GVASFLKK 898 V + + Sbjct: 871 AVPGIVAE 878 >gi|148653409|ref|YP_001280502.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1] gi|205830185|sp|A5WFW1|SYA_PSYWF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148572493|gb|ABQ94552.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1] Length = 903 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 372/913 (40%), Positives = 538/913 (58%), Gaps = 54/913 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R F++FF H +PSSSL+P NDPTL+FTN+GM FK+ F G +K Y T Sbjct: 20 TADVRKAFIDFFVSKQHTHVPSSSLVPYNDPTLLFTNAGMNQFKDCFLGIDKRDYTRAVT 79 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + LD Sbjct: 80 SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKSAIAYAWEFLTSKQWLGLD 139 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +LY+T+Y+ D+EAF +W + GL+A++IIRI N DNFW+M +TGPCGPCSE Sbjct: 140 ADKLYVTIYESDDEAFDIWHQDIGLAAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCSE 199 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +F+D GE + GGLP E+G+RYIE+WN VFMQF +Q LP S+DTGMGLER+ Sbjct: 200 VFYDHGEHVEGGLPGTPEEDGDRYIEVWNCVFMQFNRQPDGTMEPLPAPSVDTGMGLERI 259 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + +LQ +NY+IDLF +LI ++ + G+K +N + +V+ DH+R+ SFLIADG+LP+ Sbjct: 260 SAILQGVHSNYEIDLFVNLINSAADIIGIK--NDNQASLKVVADHIRAVSFLIADGVLPS 317 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + ++ L EMG AYP+L++ + IE+ + Sbjct: 318 NEGRGYVLRRIIRRAVRHGNKLGAEDSFFYKMVAPLVKEMGDAYPQLVEKQAFIEKAIEK 377 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ +F KTL +GL LLD L L ++L+G+ AFKLYDT+G P+D+ DI RG GI Sbjct: 378 EEVQFAKTLAQGLRLLDSELESLKSGDVLSGEAAFKLYDTYGFPVDLTADITRERG-IGI 436 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F++ + QR RAR +G + + + + T+F+GY+ L Sbjct: 437 DEAGFDEQMNIQRQRAR------DAGKFDVDYSAAIKVETPTEFVGYEQL---------- 480 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + + Q G+ VE G + +V D+TPFYAE GGQ+G+ G Sbjct: 481 ------------DEKEVNIIGLYQDGKEVEVLNEGDEGVIVLDRTPFYAEGGGQVGEMGE 528 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + D +K F+HH +V G L+ + + R + NHSATHLL Sbjct: 529 IRTSSGVFNVEDTKKSG-QAFIHHGVVNMGSLQKSQTADAQVVSAIRSASARNHSATHLL 587 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG VSQ GS ++ + LRFD ++ ++ +L +IE VN+ I N+ + Sbjct: 588 HAALRKVLGDSVSQKGSLVSSEMLRFDFSYDNAVSQKDLATIERLVNEQIQANVETHIEL 647 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLL 708 MN +DA+A GAAAL G KY + VRV+++ + S LCGG HV TG+I L Sbjct: 648 MNIDDAMAKGAAALFGEKYGETVRVLTMGTTEIEDGIQKPFSIELCGGLHVKRTGDIGLF 707 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AGIRRIEA+TG A ++ D +L +LA+ LK + V RV+ + ++ R Sbjct: 708 KITSESGIAAGIRRIEALTGMGALRYIQQADSQLTALANQLKAKRPEVADRVQTMADKQR 767 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L+ + ++ + IAD + ++ +D K ++ ++D ++ K+Q Sbjct: 768 ELEKQIERLNQKIASAQAATLVDNVQTIADKKVLIAQVAGIDGKAMRGLIDDIKSKLQDT 827 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+LVG K+ + ++ V++ L A D+ R A L G GGG+P AQ G P+ + Sbjct: 828 IIILVG-EKDGQLALAASVSKSLTGDIKAGDIIRHLADELE-GKGGGKPDYAQGGAPSSD 885 Query: 884 KADQAIAGVASFL 896 K + + +++ Sbjct: 886 KLTGVMQALPNWV 898 >gi|86146326|ref|ZP_01064650.1| alanyl-tRNA synthetase [Vibrio sp. MED222] gi|85835805|gb|EAQ53939.1| alanyl-tRNA synthetase [Vibrio sp. MED222] Length = 860 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 373/911 (40%), Positives = 530/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ H+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF++W K G+ ADKI+RI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDD--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +G L+ L MGSA EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAADELKKQQELVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E QR RAR G + + + T+F GY G+ Sbjct: 419 IDEEGFEKAMEAQRKRAREA------GQFGTDYNATIKVDTNTEFCGYTGTEGA------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ GE V +G K ++ ++TPFYAE+GGQ GD G Sbjct: 467 -----------------GEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + T+D + R +S+NHSATHL Sbjct: 510 TLKTASGLFKVQDTQKLGN-AFAHHGELVEGVFAQGDKVEATVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + Q + ++ E ++ + L+ Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKSLEK 729 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ + +I+ + I D+K L++++D + ++ SGII L Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 789 IANVADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847 Query: 888 AIAGVASFLKK 898 A+ V +L++ Sbjct: 848 ALKSVRIWLEE 858 >gi|94263078|ref|ZP_01286897.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1] gi|93456621|gb|EAT06729.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1] Length = 925 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 373/909 (41%), Positives = 545/909 (59%), Gaps = 40/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + ++IR FL++F H ++ SS+L+P +DPTL+FTN+GMV FK +FTG+E+ Y+ Sbjct: 45 MMDGNTIRQKFLDYFASRQHTVVASSALVPHDDPTLLFTNAGMVQFKKVFTGEEQRDYRR 104 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAWD LT+E L Sbjct: 105 AVSCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWDFLTRELGL 164 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 L+++VY++D+EA ++W+ I GL +I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 165 SPANLWVSVYEDDDEAHRIWEGIEGLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHLDQG 224 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +P P + +R++EIWNLVFM++E+ LP+ SIDTGMGLER+A V+Q Sbjct: 225 AAVPCQSPECGVDCDCDRFLEIWNLVFMEYERGADGTMKPLPRPSIDTGMGLERIAAVVQ 284 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K NNYD DLF LI + ++ G++Y RVI DH R+++FL+ADG+LPANEG Sbjct: 285 GKHNNYDSDLFLPLIHRTCELAGVEYGRSARVDTALRVIADHARATTFLVADGVLPANEG 344 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR+MRRA+ + R LG +EP + + + MG AY L ++ L+ + +R E+E Sbjct: 345 RGYVLRRVMRRAIRFGRGLGLSEPFLGEVCATVLETMGGAYSHLEASRELLRKVVRHEEE 404 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TLD GL +L L+ L + L G+ FKLYDT+G P+DI +D+ GLA D Sbjct: 405 RFLETLDHGLGMLAAELTRLKESGERGLAGEFIFKLYDTYGFPVDIAKDVAQEEGLAA-D 463 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +A+ QR ++R G G G + L E +T+F+GY R + Sbjct: 464 EAGFEEAMARQRQQSRQSWKGGGLGELGPGFRELLEGGVSTEFVGYQSRRHHAPLT---- 519 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + G+++ A +GQ+V +V QTPFYAE GGQ+GD+G Sbjct: 520 ------------------ALLDVDGKMLNTATAGQQVVLVCSQTPFYAEGGGQIGDSGEI 561 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R ++ + + E + H A V G L ++L + R++++ +H+ATHLLH Sbjct: 562 TGLHGRARVDNTIRVGEQLVAHQAEVVEGRLERGEEVLLAVGEGRRQRVAAHHTATHLLH 621 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + P LRFD TH P+ +A ++ +E VN I N + T ++ Sbjct: 622 AALRRVLGEHVKQAGSLVEPGRLRFDFTHFSPLGTAAIREVERLVNVEIRANNSLETAMV 681 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 NR++A+ SGAAAL G KY + VRVV+V G S LCGGTHV +TGEI L I++E+ Sbjct: 682 NRDEALQSGAAALFGEKYGETVRVVTV-----GEFSKELCGGTHVGATGEIGLFRIIAEA 736 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I A RRIEA+ G+ A +++ +LA LK G + GR++++ ++L+ Sbjct: 737 GIAASTRRIEAVCGEEALYRCQQLEDEWAALAGRLKCGPGELAGRIDKLLARQKELERKL 796 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ Q + DL +I ++ + K L+ + D ++ K+ S I ++ Sbjct: 797 AQMASQASGFDLERELSRVREIGGARLLACRVPADSVKTLRELGDKVRDKLGSTGIAVLA 856 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + ++L +V ++L R+ A +L + A ++ GG GGGRP MAQ+GG + DQA+ Sbjct: 857 AEIDGQVALLALVGKELQGRYKAGELVKQVAALV-GGKGGGRPDMAQAGGGDPAGIDQAL 915 Query: 890 AGVASFLKK 898 A V ++K Sbjct: 916 AAVPEIVEK 924 >gi|218710534|ref|YP_002418155.1| alanyl-tRNa synthetase [Vibrio splendidus LGP32] gi|218323553|emb|CAV19764.1| Alanyl-tRNA synthetase [Vibrio splendidus LGP32] Length = 860 Score = 887 bits (2291), Expect = 0.0, Method: Composition-based stats. Identities = 371/911 (40%), Positives = 529/911 (58%), Gaps = 69/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ H+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + RL +TVY+ D+EAF++W K G+ ADKI+RI DNFW+M +TGPCGPC+ Sbjct: 123 KDRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK ++DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G + + RVI DH+RS SFLIADG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDD--LSNQSLRVIADHIRSCSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +G L+ L MGSA EL + + L+E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E QR RAR G + + + T+F GY G+ Sbjct: 419 IDEAGFEKAMEAQRKRAREA------GQFGTDYNATIKVDTNTEFCGYTGTEGA------ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ GE V +G K ++ ++TPFYAE+GGQ GD G Sbjct: 467 -----------------GEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + +D + R +S+NHSATHL Sbjct: 510 TLSTASGLFKVQDTQKLGN-AFSHHGELVEGVFAQGDKVEARVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AG+RRIEA+TG+ A + Q + ++ E ++ + L+ Sbjct: 684 EGGIAAGVRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKSLEK 729 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ + +I+ + I D+K L++++D + ++ SGII L Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 789 IANVADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847 Query: 888 AIAGVASFLKK 898 A+ V +L++ Sbjct: 848 ALKSVRIWLEE 858 >gi|114771071|ref|ZP_01448511.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255] gi|114548353|gb|EAU51239.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255] Length = 885 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 451/910 (49%), Positives = 587/910 (64%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +V+ IR+TFL+FF+KN H ++ SS L+P NDPTLMFTNSGMV FKN F GQE Y Sbjct: 1 MVSVNDIRSTFLDFFEKNNHTVVDSSPLVPRNDPTLMFTNSGMVQFKNQFLGQEIRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIIYAWDLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY D+EA +WKK +GLS D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKYAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R+IEIWN+VFMQ EQ + L SIDTGMGLER+A +LQ Sbjct: 181 ESVFGGPPGSPEEDGDRFIEIWNVVFMQNEQFSDGTLKPLKMQSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DL + LI+AS Q TG+ G+ ++HRVI DHLRS+SFLI+DGILP+NEGRGY Sbjct: 241 SHDNYDTDLMRDLIEASAQATGVDPYGDQNLHHRVIADHLRSTSFLISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL ++MG AYPEL A+ LIEE+L E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPIMHQLVPALVSQMGQAYPELGHAQSLIEESLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L+G AFKLYDT G PLD+ QD L +G +D+ FN Sbjct: 361 TTLDRGLKLLDEETGVFASGATLSGKTAFKLYDTFGFPLDLTQDALREKG-VDVDVDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA +G G E IWF + +K+G T F+GYD Sbjct: 420 DAMSEQKAKARAAWVGSGEVADEGIWFDIADKHGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G IV + G V VV +QTPFYAE+GGQ+ D G + Sbjct: 462 -----TQTSEGQILALLQDGNIVNKVSEGDDVMVVLNQTPFYAESGGQIADNGSINVEKN 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ITDV+KKA +F+H V G + S L+++ + R + +H+ATHLL+ AL + Sbjct: 517 EIIITDVKKKAG-VFIHIGRVVFGEISNGSSAELSVNTEMRSGICNSHTATHLLNEALRS 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG H++Q GS + LRFD +HSK +T +EL+ +E VN++I QN V TRIM EDA Sbjct: 576 KLGQHIAQRGSLNAENRLRFDFSHSKSMTQSELRDVELEVNNLIRQNSSVKTRIMTPEDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ G +S LCGGTHV TG+I +++ Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGNKKDSGKGLAGNTYSLELCGGTHVQRTGQIGAFALIA 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES+ G+RRIEA TG+ A H Q + + LAS K NV+ RV+ + +E + LQ Sbjct: 696 ESASAGGVRRIEAFTGKTAELHHAEQSKIMNELASIFKTKTENVIDRVKSLIDERKLLQS 755 Query: 773 IHAKRKLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + + + + KI + NF +V SK+L+S++D + ++ SGII+L+ Sbjct: 756 EIINLRKAVAMGSNDDSQNILKINNFNFYVQTFDDVPSKDLRSLVDEHKNRLGSGIILLI 815 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + KA++ VT DL D+ NAVDL ++ A LGG GGGGRP MAQ+GG + +A Sbjct: 816 SGA-GGKAAISAGVTSDLTDQINAVDLVKIVAVELGGKGGGGRPDMAQAGGNDMANVKKA 874 Query: 889 IAGVASFLKK 898 I+ V +FLK+ Sbjct: 875 ISLVENFLKE 884 >gi|83305856|sp|Q4ZQI4|SYA_PSEU2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|224825848|ref|ZP_03698952.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002] gi|224602072|gb|EEG08251.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002] Length = 877 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 391/914 (42%), Positives = 533/914 (58%), Gaps = 60/914 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK Y Sbjct: 1 MKTSEIRQKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 TTSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWEFLTGEQWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L +TVY D+EAF +W K GL +KI+RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLMVTVYASDDEAFDIWHKTVGLPVEKIVRIGDNKGAAYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE + GG P E+G+R++EIWN VFMQF + LPK S+DTGMGLE Sbjct: 181 TEIFYDHGEEVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDETGTLHPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++TVLQ +NY+ D L++A+ + TG++Y N+ + +VI DH+R+ SF+IADGIL Sbjct: 241 RLSTVLQHVKSNYETDGLACLVRAAARETGVEY-SQNVPSLKVIADHIRACSFMIADGIL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI RRA+ + LG ++ L EMG AYPEL Q + IE+ L Sbjct: 300 PSNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVEEMGGAYPELRQQQAHIEDNL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R+E+ RF +TL+ G+ L+D L G ++GD FKLYDT G P+D+ DI R Sbjct: 360 RAEEVRFAETLEHGMALVDAALQ--GGKIRMDGDTIFKLYDTFGFPVDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D+ F A+ QR RARA S +G +L+ T+F GY+ Sbjct: 417 EVDMEGFEHAMNAQRERARAASSFKMTG-------NLEYAGADTRFHGYE---------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T V + V A+ + VE+ G++ VV D T FYAE GGQ+GD Sbjct: 460 -------------TASVDAKVLALFKGNTPVEQLAEGEEGVVVLDDTAFYAEGGGQVGDC 506 Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G G +TD QK F H V RG L ++ TID R + NHS Sbjct: 507 GEISVSGGVGALFDVTDTQKIKAATFGHSGRVVRGALHVGDTVQATIDLHKRLATARNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LGSHV+Q GS + + RFD H +P++ A++ IE VN I+ N+ Sbjct: 567 ATHLLHAALRHVLGSHVAQKGSLVNAERTRFDFAHGEPVSVAQIAEIERVVNRIVLHNVE 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +M +DAI +GA AL G KY D VRV+ + G S+ LCGGTHV TG+I Sbjct: 627 VSANVMAYDDAIRAGAIALFGEKYGDEVRVLKM-----GEFSTELCGGTHVKRTGDIGFF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767 IV+E + AG+RRIEA+TG+ A ++ Q+ +K A LK VVG++ + + Sbjct: 682 KIVAEGGVAAGVRRIEAVTGEGAVAYAQQQESLVKEAAGALKAQTSEEVVGKIGSLQDNL 741 Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L+ ++ K +L S +I + ++ + D+ L+ +D L+ K++S Sbjct: 742 KALEKELSRLKAKLAASAGDTLADSAVEIGGIKVLAAELEGADNTALRETLDKLKDKLKS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L + K S++ VT DL + A +L A+ + GG GGGRP MAQ+GG Sbjct: 802 AAIVLAA-KGDGKVSLVAGVTADLTGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQP 859 Query: 883 NKADQAIAGVASFL 896 K +A+AGV +++ Sbjct: 860 EKLAEALAGVNAWV 873 >gi|148260046|ref|YP_001234173.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5] gi|205829966|sp|A5FXC2|SYA_ACICJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146401727|gb|ABQ30254.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5] Length = 878 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 433/902 (48%), Positives = 593/902 (65%), Gaps = 30/902 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TVY ED+EA LWK+I+GL +KIIRI T+DNFW M +TGPCGPCSEIF+D Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQF ++ R LP+ SIDTGMGLER A +LQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS +V+ +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG EP + L+PAL +MG A+PEL +A+ LI ETL+ E+++F Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL+ + LG E L G VAFKLYDT+G PLD+ +D L + G+D F Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ EQ++RARA G G TE +W L+++ G T+F+GY Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYSTEESD------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + A+V G A +GQ+V ++ +QTPFYAE+GGQ+GDTG G+ Sbjct: 467 ----------ASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD QKKA +FVH+ +E G + S+ +D+ R + +HSATHLLH AL Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD++ +P+T AEL+++E VN I +N V TR+M ++A Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + GA AL G KY D VRVVS+ D G +S LCGGTHV+ TG+I I++ES + Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGRSAYSIELCGGTHVARTGDIGAFRILAESGVA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+TG+ A + + + L+ A+ LKV+ + R+ + EE ++ + A+ Sbjct: 697 AGIRRIEAVTGEAALAATEAETDLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756 Query: 778 KLQLNV--EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + +L ++A + F + + EV ++LKS+ D++ K + SGI LV + E K Sbjct: 757 QRKLATGGAAAEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-ESK 815 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 AS+++ V+ DL NAV L + ++ V+GG GGGGRP MAQ+GGP+ +KAD+A+A V + Sbjct: 816 ASIVVAVSPDLTSANNAVTLVQAASGVVGGKGGGGRPDMAQAGGPDASKADEALAAVRAL 875 Query: 896 LK 897 +K Sbjct: 876 IK 877 >gi|261392163|emb|CAX49673.1| alanyl-tRNA synthetase (alanine--tRNA ligase; AlaRS) [Neisseria meningitidis 8013] Length = 874 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 518/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYTE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + ++ I D+ L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQIE-ADAAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|222054217|ref|YP_002536579.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32] gi|221563506|gb|ACM19478.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32] Length = 876 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 379/906 (41%), Positives = 545/906 (60%), Gaps = 42/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F FF++ GH ++ SS+L+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MTGKEIREKFFRFFEERGHTVVESSNLVPRNDPTLLFTNAGMNQFKDLFLGLEKRGYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AWD LT+E LD Sbjct: 61 CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWDFLTRELKLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA ++W K G+ ++I R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 KNRLYVTVYTDDDEAAEIWNKQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWN VFMQF + K LPK S+DTGMGLER+ TV+Q Sbjct: 181 GTGCGSPTCEVGCDCDRYMEIWNNVFMQFNRDAKGNMTPLPKPSVDTGMGLERICTVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 T+NYD DL + +I+ E+++G +Y + + V+ RVI DH R+ +FLI DG+LP+NEGR Sbjct: 241 VTSNYDTDLLQGIIRHVEKLSGKRYRQDEKDDVSMRVIADHARAITFLICDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG+ EP++ ++ A+ MG AYPEL++ + +++ + +E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVLYRIVDAVNAMMGDAYPELLEREEYVKKVIHAEEER 360 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ ++ +L G+V F+LYDT G P+D+ DI+ GL ID Sbjct: 361 FMETLDRGLSILNEEVALLKKQAGTVLPGEVVFRLYDTFGFPVDLTADIVANEGLT-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR +AR + G G +I+ +L K + F+GYD Sbjct: 420 DGFVLCMEKQRLQARENWKGSGEEGLAEIYKNLHGKGIRSAFVGYDE------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + ++++G V EAV G++VEVV TPFY +GGQ GD G Sbjct: 467 ----------QTAYSPITVLLREGREVTEAVVGEEVEVVVGTTPFYGASGGQAGDIGVIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 L++ K + VH +VE+G ++ + L + + R + NH+ATHLL Sbjct: 517 TGNAHLKVVGTSKPFADLTVHRVLVEKGTVKVGDAADLKVLTRERNATARNHTATHLLQS 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q GS +T D LRFD TH + + EL+ +E+ VN I +N V + M Sbjct: 577 ALRQVVGDHVKQAGSLVTADRLRFDFTHFSAMAADELRRVENIVNGYIMENSDVSSVEMA 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A+ SGA AL G KY DRV G SS LCGGTHV + G+I IVSE+ Sbjct: 637 AAEAMQSGATALFGEKYGDRV-----RVVRVGEVSSELCGGTHVQAAGDIGFFKIVSEAG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG A ++ +++ K LA+ +K G V+ RVE + ++LQ Sbjct: 692 IAAGVRRIEAVTGSGAIEYVQQLEDEQKHLATLIKAEGGGVIDRVERLLARQKELQREVE 751 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + +LN + + + ++ + D K L+ + D+L+ ++QSG+I+L G Sbjct: 752 ELQSRLNASKSADLLAGVRESNGIKILATRVETGDPKGLRDLSDSLKDRLQSGVIVL-GC 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + KA++L+ VT+DL DR A D+ + A ++ GG GGG+P +AQ+GG D+A+ Sbjct: 811 AAAGKANLLVAVTKDLTDRCKAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEALE 869 Query: 891 GVASFL 896 + Sbjct: 870 AAYKII 875 >gi|330953630|gb|EGH53890.1| alanyl-tRNA synthetase [Pseudomonas syringae Cit 7] Length = 874 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGRS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDVTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|330939519|gb|EGH42850.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 874 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRAADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVLFVEQ 872 >gi|319779380|ref|YP_004130293.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9] gi|317109404|gb|ADU92150.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9] Length = 874 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 385/912 (42%), Positives = 551/912 (60%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF+ H ++ SS LIP NDPTL+FTN+GMV FK++F G+EK Y Sbjct: 1 MKASEIRHNFLKFFESKNHTIVSSSPLIPANDPTLLFTNAGMVQFKDVFLGKEKRTYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+LLT F L Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAITYAWELLTTVFQLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EAF +W+ G+ +KIIRI N DNFW M +TGPCGPC+E Sbjct: 121 KEKLLVTVYAEDDEAFGIWRDKVGVPEEKIIRIGDNKGSRYASDNFWQMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+R+IEIWNLVFMQFE+ ++ LPK +DTGMGLER+ Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRFIEIWNLVFMQFERDSEGVLHPLPKPCVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLFK+LI+A+ T NN + +VI DH+R+ SFLI DG++P Sbjct: 241 AAVLQHVHSNYEIDLFKNLIKAAAVATNTSDLENN--SLKVIADHIRACSFLICDGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+PAL EMG A+PELI+ + I L+ Sbjct: 299 NEGRGYVLRRIIRRALRHGHKLGQNKTFFHTLVPALTKEMGEAFPELIEWQDRISSILKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++RF +TLD G+ +L+ LS+L K + ++G F LYDT+G P+D+ DI RG G+ Sbjct: 359 EEDRFQETLDHGMKILESCLSNLEKGQNIDGQTLFILYDTYGFPVDLTADIARERG-VGV 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F +A+++Q+ ARA +L T F GY+ L S+ Sbjct: 418 DLDGFEKAMDKQKETARASGKFKAQE-------NLSYSGTDTSFSGYEHLVESR------ 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + ++AI G VE A GQ+V VV D+TPFYAE+GGQ+GD+G Sbjct: 465 ----------------ANIQAIYVDGASVESADEGQEVVVVLDRTPFYAESGGQVGDSGF 508 Query: 534 AIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 IG ++ I+D +K +F H+ VE+G ++ S+ ++ +NR ++ +HS TH Sbjct: 509 LIGSDTDKQVSISDTRKITPTVFGHYGRVEKGSIKLNDSVDAIVNAENRVLVTAHHSVTH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS + + RFD +H+ P+T E++ +E VN+ I Sbjct: 569 LMHLALREVLGDHVKQKGSLVDSEKTRFDFSHNSPMTEEEIRKVELLVNNQILMGRDTYV 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA+ SGA L G KY D VRV+ + S LCGGTHVS+TG+I L I+ Sbjct: 629 EVMPYDDALKSGAIGLFGEKYGDFVRVMQIGD------SRELCGGTHVSNTGQIGLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES + +G+RRIEA+ G +A + + A+ LK S ++V +++ ++ L+ Sbjct: 683 SESGVASGVRRIEAVAGFKALEWIQNTYRVINQSANLLKSSPKDLVSKIKIQIDQISALE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L S +++ + ++ + +V++K L+ ++D ++ K+ SG++ Sbjct: 743 KEITHLKQKLISASSGDLLSSLKEVSGIKTLACEVKDVETKALRDLVDQMKSKLGSGVVA 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + + K ++ VT+DL + A DL +++L GG GGGRP MA GG Sbjct: 803 IFLVEGD-KVTIATGVTKDLTHKLKAGDLVSRLSQIL-GGKGGGRPDMAMGGGTKVEDLQ 860 Query: 887 QAIAGVASFLKK 898 +AI V +++K+ Sbjct: 861 KAILDVEAWVKE 872 >gi|58582562|ref|YP_201578.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624448|ref|YP_451820.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575923|ref|YP_001912852.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434894|sp|Q5GYM8|SYA_XANOR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123521587|sp|Q2P1N1|SYA_XANOM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830287|sp|B2SUD0|SYA_XANOP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58427156|gb|AAW76193.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368388|dbj|BAE69546.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520375|gb|ACD58320.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 882 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGRGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPT 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFECAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------RVVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++LQ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLQREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L + +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AS-GGKVALVSGVNGSPTGKVKAGELLSNIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|294649969|ref|ZP_06727359.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194] gi|292824138|gb|EFF82951.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194] Length = 884 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 391/913 (42%), Positives = 530/913 (58%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 8 MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT + Sbjct: 68 VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLG 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY+TVY D+EAF +W K G+ A++IIRI N DNFW+M +TGPCGPC Sbjct: 128 LPKDRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 188 SEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 248 RISAVLQHVNSNYEIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 305 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL Sbjct: 306 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 365 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L ++ G+ FKLYDT+G P D+ DI R L Sbjct: 366 IREEEQFAKTLEQGLKLLEGELAQLK-GNVIAGETVFKLYDTYGFPTDLTADIARERDLT 424 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + S+ + G TQF GYD G Sbjct: 425 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATHG------ 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 472 -----------------QGQIVAIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDT 514 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D ++ D +K FVH IV G L+ S+ T+ R + NHSATH Sbjct: 515 GIFKNDTGIFEVQDTKKSGG-AFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HV Q GS + D LRFD + +P+T +L+ IE VN + N PV T Sbjct: 574 LLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTT 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ + S LCGG HV TG+I L I Sbjct: 634 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEEKNFSIELCGGIHVKRTGDIGLFKI 693 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++++ S LK + V +VE + E L Sbjct: 694 TSEGGVAAGVRRIEAVTGTQALEVVQKVDHDIQTINSLLKAQKDQTVEKVEAVVETASSL 753 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + +D+K L+++ D+++ K++ +I Sbjct: 754 QKQIEQLNQKLASFQAAELLDQVKDIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAVI 813 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S++ V + A D+ + A+ L GG GGG+P +AQ G P K Sbjct: 814 ILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEKF 871 Query: 886 DQAIAGVASFLKK 898 DQ A + ++L++ Sbjct: 872 DQVFAALPAWLEQ 884 >gi|325204570|gb|ADZ00024.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240355] Length = 874 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYTE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + ++ I D+ L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQIE-ADAAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|114330803|ref|YP_747025.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91] gi|122314262|sp|Q0AHX2|SYA_NITEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114307817|gb|ABI59060.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91] Length = 863 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 371/902 (41%), Positives = 545/902 (60%), Gaps = 48/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K Y Sbjct: 1 MKSSEIRQKFLDFFETHGHVVVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT ++ Sbjct: 61 VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAILFAWEFLTGPLNIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+ TVY ED+EA +W ++ +++RI T+DNFW M ETGPCGPCSEIF+D G Sbjct: 121 KDKLWATVYAEDDEAADIWLNEVKIAPSRLVRIATSDNFWQMGETGPCGPCSEIFYDHGP 180 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS +G+RY+EIWNLVFMQ+ + E LPK S+DTGMGLER+A V+Q+ Sbjct: 181 EVAGGPPGSEDADGDRYVEIWNLVFMQYNRDTSGELHPLPKPSVDTGMGLERIAAVMQQV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+A+ +VTG + NN + +VI DH+R+ +FLI DG++P NEGRGYV Sbjct: 241 HSNYEIDLFRCLIEAAARVTGEQDLSNN--SLKVIADHIRACAFLITDGVIPGNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + L+ L MG AYPEL+ AK + +R E+ERF + Sbjct: 299 LRRILRRAIRHGYRLGQKQSFFHLLVDDLVDVMGQAYPELMAAKKHVIAVIRQEEERFAE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ +L+ L+ + +L GDV F+LYDT G P+D+ DI RG GID+ F Sbjct: 359 TLENGMGVLEAALAR--ESNMLPGDVVFRLYDTFGFPVDLTADIARERGG-GIDLAGFEM 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + +QR RARA L+ T+F GY+ L+ Sbjct: 416 CMAQQRDRARASGKFTMQAG-------LEYVGLPTEFHGYETLQH--------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + + ++G V+ +G + VV DQTPFYAE+GGQ GD+G + Sbjct: 454 --------EAHILVLYKEGSHVDFIEAGDEAVVVLDQTPFYAESGGQAGDSGELLSGSGT 505 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + D QK +F H ++ G L T ++ ++ R + NHSATHLLH AL I Sbjct: 506 FTVKDTQKIQAKVFGHAGMLSSGRLVTGDRVIARVNPIARINTAYNHSATHLLHAALRQI 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+HV+Q GS + D LRFD +H+ + + E++ +E+ VN I +N V T++M ++A+ Sbjct: 566 LGNHVTQKGSLVDADRLRFDFSHNSAMQANEIRQVENLVNAQIRKNHEVATQLMAYDEAV 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+D VRVVS+ G S+ LCGGTHV +G+I IV+ES + AGI Sbjct: 626 KQGAMALFGEKYSDTVRVVSM-----GDFSTELCGGTHVQHSGDIGFFRIVAESGVAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ Q+++L+ ++ LK + ++ ++ + R+++ + + Sbjct: 681 RRIEALTGEAALAYTQQQEQQLQQVSDVLKAAPHEAALKLSQVLDHVRQVEKEITVLRSK 740 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S +I + ++ + V+ + L+ +D + +++S +++L G ++ K Sbjct: 741 LAGMQSSSLIEQAQEIKGIRVLAAALENVNVRTLRETLDNFKSRLKSCVVVL-GTIEDDK 799 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT DL + A DL A+ + GG GGGR MAQ+GG +K QA+ VA + Sbjct: 800 VMLIAGVTNDLTAKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPDKLPQALTSVAGW 858 Query: 896 LK 897 ++ Sbjct: 859 VE 860 >gi|49474375|ref|YP_032417.1| alanyl-tRNA synthetase [Bartonella quintana str. Toulouse] gi|59798531|sp|Q6FZF1|SYA_BARQU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49239879|emb|CAF26277.1| Alanyl-tRNA synthetase [Bartonella quintana str. Toulouse] Length = 888 Score = 885 bits (2287), Expect = 0.0, Method: Composition-based stats. Identities = 464/911 (50%), Positives = 625/911 (68%), Gaps = 37/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+TFL++F NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ + Sbjct: 1 MNSVNSIRSTFLDYFHLNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPCKQ 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR GGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI L+W+LLTKEF L Sbjct: 61 ATTAQKCVRVGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFLSWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW+KIS LS +KI+RI T DNFW+M ETGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHSDDVAAELWRKISNLSDEKIVRIATVDNFWAMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS +E G+R+IEIWNLVFMQ+EQ +K+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSANEGGDRFIEIWNLVFMQYEQVSKEERVELPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS+++TG++ G+ I +HRVI DHLRS +FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFRALIGASQEITGVEATGDFIASHRVISDHLRSCAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG EPLM LLP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGVKEPLMWRLLPVLVREMGQAYPELVRAESLISETLKLEEMRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ S+L + + NG++AFKLYDT+G PLD+ QD L RG +D+ +F+ Sbjct: 361 KTLERGLGLLNEASSNLKEGDHFNGEIAFKLYDTYGFPLDLTQDALRCRG-ISVDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ Q++ ARA+ G G TE IWF+++++ GAT+F+GY+ Sbjct: 420 KAMQRQKTEARANWSGSGEAVTETIWFAVRDRVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I+ A++ G++V+ SGQK +V +QTPFY E+GGQ+GD+G Sbjct: 462 -----IEKAEGIITALICDGKVVDHISSGQKAIIVVNQTPFYGESGGQIGDSGIISSGCF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKK+ G+F+H V+ G +T + LT+D R+++ NHSATHLLH AL Sbjct: 517 VFEVHDTQKKSNGVFIHIGEVKSGQAKTFECVELTVDVVRRQKIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS + PD LRFD +H K ++S ELK IED NDI+ QN V T +M +DA Sbjct: 577 ILGPHVTQKGSLVLPDRLRFDFSHPKSVSSEELKKIEDLANDIVLQNSEVTTHLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS+ S LCGGTHV TG+I L++IVSES Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNPLEPEGLKKRWSIELCGGTHVERTGDIGLIHIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG AR + QDE+++ ++S LK +V RV + EY +L Sbjct: 697 SVAAGVRRIEALTGTAARLYFNRQDERIREISSLLKTVPADVGERVSNLLHEYNRLSQAC 756 Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + ++ + + I ++FM ++ + ++LK+++D +K+I SG++ Sbjct: 757 IELRKKIILSGNTIKNNQEDITIINGISFMGRVVRNILPRDLKALVDDGKKQIGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +++ K S ++ VT DL D+ NAV+L + + VLGG GGGGRP MAQSGGP G+KA Sbjct: 817 ISVAENGKGSAVVGVTNDLTDKLNAVNLIHILSDVLGGKGGGGRPDMAQSGGPEGDKAVG 876 Query: 888 AIAGVASFLKK 898 A+A + + L+K Sbjct: 877 ALAALRASLEK 887 >gi|77164443|ref|YP_342968.1| alanine--tRNA ligase [Nitrosococcus oceani ATCC 19707] gi|254433958|ref|ZP_05047466.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27] gi|123594696|sp|Q3JCK8|SYA_NITOC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|76882757|gb|ABA57438.1| alanyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707] gi|207090291|gb|EDZ67562.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27] Length = 873 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 388/906 (42%), Positives = 541/906 (59%), Gaps = 50/906 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + +R FL++F+ HE++PS L+P NDPTL+FTN+GMV FK +F G+E Y Sbjct: 1 MKSSAELRKIFLDYFRHQSHEIVPSGPLVPANDPTLLFTNAGMVQFKEVFLGREVRAYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ L Sbjct: 61 AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++TV+ ED+EA +W + G+S ++ R DNFWSM ETGPCGPCSEIF+D G Sbjct: 121 PPERLWVTVFKEDDEAANIWLQEIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E EG+RY EIWNLVFMQ+++ + LP+ S+DTGMGLER+A V+Q Sbjct: 181 PEIEGGPPGSPEQEGDRYTEIWNLVFMQYDRGKEGRLSPLPRPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF++LI A ++G++ + RVI DH+RS FLI DGI P+NEGRGY Sbjct: 241 VHDNYNIDLFRNLIAAITALSGIQ--NQEQTSLRVIADHIRSCVFLIVDGIQPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG +P L+ L EMG AYPEL + + +E L+ E+ERF Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYRLVEPLVQEMGEAYPELFRLQSQVERVLKLEEERFN 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL +L+ + L D ++ G+ F+LYDT G P+D+ DI R L +D+ F Sbjct: 359 ETLEQGLKILEQDIIDLS-DAVIPGETIFRLYDTFGFPVDLTADIARERKLT-LDMKGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+ +QR RARA S + S + T+F GY+ LRG Sbjct: 417 QAMAKQRKRARAASRFKIE------YGSELQMDLETEFTGYEQLRG-------------- 456 Query: 480 PPIDLTNGVSSIVKAIVQ---QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + A+ + E VE+ +G+ VV D+TPFYAEAGGQ+GD G G Sbjct: 457 ---------EGQIAALFRLAETMETVEQLSAGESGMVVLDRTPFYAEAGGQVGDRGTLRG 507 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +TD K+ VH V G LR S+ +D + R +NHSATHLLH A Sbjct: 508 SNGLFNVTDTHKQGA-AHVHLGEVRLGQLRVGDSIQSEVDRKYRTPTRLNHSATHLLHAA 566 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG V Q GS + D LRFD +H + + S +L+ IE VN I NLPV T+IM Sbjct: 567 LREVLGEGVIQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLVNAKIRANLPVETQIMPL 626 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ +G AL G KY ++VRV+ + G S LCGGTHV TG+I L I++E + Sbjct: 627 QQALDAGVMALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGV 681 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA+TG+ A S + + L++L LK S+ + V ++E++ ++ R+ + + Sbjct: 682 AAGIRRIEAVTGEAALSWVEEGEVCLEALMGRLKASRNSAVDKLEQLQQQTRQQEKELQR 741 Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + +I + ++ I VDSK L++ +D L+ K+ + ++L G Sbjct: 742 LKAKLATTGGADLSIQAQEIRGIKVLAARIDGVDSKTLRATVDQLKGKLITAAVVL-GTV 800 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K ++ VT + R A DL A+ + GG GGGRP MAQ+GG N +K D A+ Sbjct: 801 VEDKVVLIAGVTNNATSRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRNPDKLDAALDL 859 Query: 892 VASFLK 897 V +++ Sbjct: 860 VPKWVE 865 >gi|326403001|ref|YP_004283082.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301] gi|325049862|dbj|BAJ80200.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301] Length = 878 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 436/901 (48%), Positives = 594/901 (65%), Gaps = 30/901 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TVY ED+EA LWK+I+GL +KIIRI T+DNFW M +TGPCGPCSEIF+D Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQF ++ R LP+ SIDTGMGLER A +LQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS +V+ +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG EP + L+PAL +MG A+PEL +A+ LI ETL+ E+++F Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL+ + LG E L G VAFKLYDT+G PLD+ +D L + G+D F Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ EQ++RARA G G TE +W L+++ G T+F+GY Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYSTEESD------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + A+V G A +GQ+V ++ +QTPFYAE+GGQ+GDTG G+ Sbjct: 467 ----------ASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD QKKA +FVH+ +E G + S+ +D+ R + +HSATHLLH AL Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD++ +P+T AEL+++E VN I +N V TR+M ++A Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + GA AL G KY D VRVVS+ D G +S LCGGTHV+ TG+I I++ES + Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGKSAYSIELCGGTHVARTGDIGAFRILAESGVA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+TG+ A + + L+ A+ LKV+ + R+ + EE ++ + A+ Sbjct: 697 AGIRRIEAVTGEAALAATEAAADLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756 Query: 778 KLQLNV--EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + +L ++A + F + + EV ++LKS+ D++ K + SGI LV + E K Sbjct: 757 QRKLATGGAASEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-EGK 815 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 AS+++ V+ DL DRFNAV L R +++ +GG GGGGRP MAQ+GGP+G KAD+A+A + + Sbjct: 816 ASIVVAVSPDLTDRFNAVTLVRAASEAVGGKGGGGRPDMAQAGGPDGGKADEALAAIRAS 875 Query: 896 L 896 L Sbjct: 876 L 876 >gi|126737803|ref|ZP_01753533.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6] gi|126721196|gb|EBA17900.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6] Length = 883 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 429/893 (48%), Positives = 573/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG E Y+ Sbjct: 1 MATLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFTNSGMVQFKNCFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+TKE + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITKELVV 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TVY D+EAF++W+K G+ D+IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKERLYTTVYHTDDEAFEIWRK-IGVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNEKFADGSMIDLEMQSIDTGMGLERIAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK LI+AS VT G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 240 THDNYETDLFKSLIEASADVTSTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL Q + LIEET E+ RF Sbjct: 300 VLRRIMRRAMRHASLLGAKDPVMHKLVPALVQKMGAAYPELGQGQALIEETFEQEETRFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD + + K + L+G+ AFKLYDT+G PLD+ QD L A+ +D F+ Sbjct: 360 KTLDRGLKLLDDASADMDKGDTLSGETAFKLYDTYGFPLDLTQDALRAK-EIEVDTQGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQ+ ++RA +GLG K++F + + G T+F+GY+ Sbjct: 419 AAMKEQKEKSRAGGIGLGEAADVKVYFDILDASGPTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV+ G VE A G+ V+++ +QTPFY E+GGQ+GD+G +G Sbjct: 461 -----TEKAEGQIAAIVKDGAKVESAGRGETVQIILNQTPFYGESGGQVGDSGVLTVEGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++D KK EG+F+H A V G + + + +D++ R Q+ NHSATHLLH AL Sbjct: 516 TAVVSDT-KKVEGLFLHIAEVTEGQIAVGLGAAMEVDHKRRSQIRANHSATHLLHEALRN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ EL + VND I QN V TRIM +DA Sbjct: 575 ALGEHVAQKGSLNADDRLRFDFSHNKAMSAGELVKVGAEVNDFIRQNTEVTTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 GA AL G KY + VRVVS+ DG +S LCGGTHV TG+I I+ + Sbjct: 635 RDLGAQALFGEKYGEEVRVVSMGKAETGKGHDGQTYSIELCGGTHVKQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A ++L + ++ +A LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAYAYLEREASRMAEIAGALKAQPAEVMDRLKAMMDERKALQNE 754 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K Q+ + +I F++ + V K+L+ ++DA ++ I SG+I+L+ Sbjct: 755 ISNLKQQVAMGGGAAGGSEAKEIGGKKFLAQALQGVSGKDLRGLIDAHKQNIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VTEDL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 815 A-EDDGKVAVAAGVTEDLTSDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|29654361|ref|NP_820053.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|154706669|ref|YP_001424370.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] gi|41018200|sp|Q83CQ6|SYA_COXBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830040|sp|A9KG28|SYA_COXBN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29541628|gb|AAO90567.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|154355955|gb|ABS77417.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] Length = 865 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 369/903 (40%), Positives = 544/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 61 VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS+E +G+RY+EIWNLVFMQ+ + K L K S+DTGMGLER+A V+Q Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLF++L++A + + + + RVIVDH+RS +FLIADG++P+NEGRGYV Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++ Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR +++ + + + G TQF+GY+ L Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + V +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L + D+ ++ + VD + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT++ L+ FNA +L A+ + GG GGRP +AQ G + A+A V + Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858 Query: 896 LKK 898 ++K Sbjct: 859 IEK 861 >gi|126726568|ref|ZP_01742409.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150] gi|126704431|gb|EBA03523.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150] Length = 886 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 429/911 (47%), Positives = 584/911 (64%), Gaps = 40/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR++FL +F K GH+++ SS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MQTLNDIRSSFLSYFDKQGHQVVDSSPLVPRNDPTLMFVNSGMVQFKNMFTGAETRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFKE AI AW+++TK + Sbjct: 61 AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKEDAILFAWEMVTKVLGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY D+EA +WKK++GLS D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++EIWNLVFMQ Q +LPK SIDTGMG+ER+A +LQ Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQNVQHEDGSMTLLPKQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T +G +HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 241 TNDNYSTDLMRSLIEASANETSSDPDGAGKTHHRVIADHLRSTSFLLADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL ++MG+AYPEL QA+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVSQMGAAYPELQQAQSLITETLKQEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD ++ LG+ L+G AFKLYDT G PLD+ QD L +GL G+D F+ Sbjct: 361 QTLERGLRLLDDEVAGLGEGADLSGSAAFKLYDTFGFPLDLTQDALREKGL-GVDKDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA +G G +WF + +++G T F+GYD Sbjct: 420 AAMAEQKAKARAAWVGTGETADASLWFDIADEHGVTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+++ G V+ + G V++V +QTPFYAE+GGQ+GD G Sbjct: 462 -----TEVAEGQVLALIKDGVSVDATIVGDSVQIVMNQTPFYAESGGQIGDAGTLKTANG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD +K A +F+HH V G + + + L +D+ R + NHSATHLLH AL Sbjct: 517 LVEVTDTRKNAG-LFIHHGKVVSGTVSKDEAAELVVDHARRGAIRANHSATHLLHEALRG 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HVSQ GS D LRFD +H+ I+ +L+ +E+ VN I QN V TRIM +DA Sbjct: 576 ALGDHVSQRGSLNAADRLRFDFSHNAAISQDDLRKVEEEVNAYIRQNTEVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ +G +S LCGGTHV TG+I I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGQQSGSGKGANGETYSLELCGGTHVGQTGDIGTFVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG A ++L QD+++ ++A LK V RV+ + +E + LQ Sbjct: 696 DSASSAGVRRIEALTGAEAFAYLRDQDQRISTVAGMLKAQPEEVGARVKALMDERKSLQN 755 Query: 773 IHAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + L + + ++ V F + +++ V K+L +++D ++ + SG ++ Sbjct: 756 QLAEARRSLAMSGGGQSAPAAAIEVGGVKFHAQVLTGVTGKDLPALVDEHKESLGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L+ KA+V VT DL++R +AVDL + + LGG GGGGRP MAQ GG + ++ Sbjct: 816 LIA-DTGGKAAVAAGVTADLVERISAVDLVKAAVVELGGKGGGGRPDMAQGGGASAENSE 874 Query: 887 QAIAGVASFLK 897 AI + LK Sbjct: 875 NAIKAATAVLK 885 >gi|170751975|ref|YP_001758235.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831] gi|205830144|sp|B1M0N0|SYA_METRJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170658497|gb|ACB27552.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831] Length = 892 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 460/914 (50%), Positives = 598/914 (65%), Gaps = 40/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F K GHE++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFAKAGHEVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGMEKRAYDR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +D+EA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 KPDKLLVTVYADDDEAAGLWKKIAGFSDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PALQGGPPGSPDEDGDRFLEFWNLVFMQYEQLEPGVRNPLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLR+SSFL+ADG+LP NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATMASYRVIADHLRASSFLVADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG EP M L+P L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAEILGAREPTMFRLVPTLVREMGQAYPELMRAESLIAETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +LD L + + L+G+ AF LYDT+G PLD+ QD L ARG G+D +F Sbjct: 361 RTLERGLSILDAESRDLREGDKLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTDAFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ AR G G TE +WF L+E+ GAT+F+GY+ Sbjct: 420 AAMQRQKQAAREAWKGSGEAATETVWFGLRERVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T IV A+++ G V +GQ V+ +QTPFY E+GGQ+GDTG + G+ Sbjct: 462 -----TENAEGIVTALLRDGAEVTTLAAGQTGLVLVNQTPFYGESGGQVGDTGLILAPGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD QKK +FVHH VE G L + + L +D R+ + NHSATHLLH AL Sbjct: 517 RARVTDTQKKLGDVFVHHVTVEEGTLSLDQPVELKVDNVRRKAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD++H KPI + EL +ED N ++ QN PVVT++M +DA Sbjct: 577 VLGDHVAQKGSLVSPERLRFDISHPKPIEADELARVEDIANAVLLQNAPVVTKLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGGTHVSSTGEIMLLYIV 711 IASGA AL G KY D VRVVS+ G S LCGGTH + TG+I + IV Sbjct: 637 IASGARALFGEKYGDEVRVVSMGLPVDGEAAQPRARNFSVELCGGTHAARTGDIGAITIV 696 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES++ AG+RRIEA+T AR H + L +LA LK R+ + E+ R+L+ Sbjct: 697 AESAVGAGVRRIEALTADAARRHRAEEARTLAALAGILKAPVSEAPDRLTALMEDRRRLE 756 Query: 772 LIHAKRKLQLNV-------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A+ + +L + +I V F +I +D ++LK ++D +K++ SGI Sbjct: 757 RELAETRRKLAMGGEGGPGSGAQQTEIGGVAFRRSVIEGLDMRDLKPIVDEEKKRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + +VGI + KA +++ VT+DL R++AV L R A LGG GGGGR MAQ+GGPNG Sbjct: 817 VAVVGIGPDGKAGLVVGVTDDLTARYDAVGLVRAGAGALGGKGGGGRRDMAQAGGPNGAG 876 Query: 885 ADQAIAGVASFLKK 898 A+ A+ VA L + Sbjct: 877 AEAALDAVAQALTE 890 >gi|89071223|ref|ZP_01158404.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516] gi|89043236|gb|EAR49465.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516] Length = 885 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 429/893 (48%), Positives = 586/893 (65%), Gaps = 38/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL++F++ GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E YQ Sbjct: 1 MTSLADIRSTFLDYFRRQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFK AI AW+++TKE D+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKADAIPFAWEMVTKELDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY +D+EA +LW+K++GL ++IIRI T+DNFW M TGPCGP SEIFFD G Sbjct: 121 PAERLLVTVYHDDDEAAELWRKVAGLPDERIIRIATDDNFWMMGPTGPCGPSSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E GG PGS E+G+R+IEIWNLVFMQFEQ R L SIDTGMGLER++++LQ Sbjct: 181 EKFWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTRRELAAQSIDTGMGLERISSLLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N ++ DLF+ +I AS + + ++ +HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 241 TNNVFETDLFRAIIDASAHASNTSTDEAHLTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG ++PLM L+PAL +MG+AYPEL + + +IE+TL +E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGASDPLMHRLVPALVQQMGAAYPELREQQAMIEDTLETEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD ++ L + L G+ AFKLYDT+G PLD+ +D L RG +D+ FN Sbjct: 361 NTLDRGLKLLDDEVARLETGKNLPGETAFKLYDTYGFPLDLTEDALRERG-ISVDLPGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++EEQ+ +ARA G G + +WF + +++G T F+GYD Sbjct: 420 ASMEEQKRKARAAWSGSGEAADQTVWFDIADEHGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G VE A +G +V++V +QTPFYAEAGGQ+GD G + Sbjct: 462 -----TETAEGQVLALVRDGAPVERAGAGAQVQIVLNQTPFYAEAGGQVGDAGTLTTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD +K A ++VH A V G + L +D+ R + NHSATHLL+ AL Sbjct: 517 TAEITDCRKIAG-VYVHFARVTAGEIAAGEGARLEVDHARRGAIRANHSATHLLNEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS PD LRFD +H+K + + ++ ++E VN++I QN PV TRIM ++A Sbjct: 576 VLGDHVAQRGSLNAPDRLRFDFSHNKAMGADDIAAVEREVNELIRQNAPVTTRIMTPDEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ DG +S LCGGTHV+ TG+I L + +E Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGIADTGKGLDGKTYSIELCGGTHVARTGDIGLFALTTE 695 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 ++ AG+RRIEA+TG+ A + L +D L + + LK V GRV + +E + L Sbjct: 696 AASAAGVRRIEALTGEAAMAELRRRDRSLGEVEALLKCGPDEVAGRVRALMDERKALANE 755 Query: 774 HAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ + QL E + +I + F++ ++S V K+L S++D ++ + +G ++L+ Sbjct: 756 VSQLRRQLAMSGGPAEGPAAREINGMRFVAQVLSGVTGKDLPSLIDGMKSDLGTGAVLLI 815 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + KA+V VT DL++R +AVDL R + LGG GGGGRP +AQ GG + Sbjct: 816 A-DTDGKAAVAAGVTADLVERVSAVDLVRAAVAELGGKGGGGRPDLAQGGGKD 867 >gi|319408736|emb|CBI82393.1| Alanyl-tRNA synthetase [Bartonella schoenbuchensis R1] Length = 889 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 469/911 (51%), Positives = 628/911 (68%), Gaps = 38/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+ IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ Sbjct: 1 MNSVNKIRSTFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQLSCSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW+KISGL +KIIRI TNDNFW M +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHSDDVAAQLWRKISGLPDEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ +K +R LP SIDTGMGLER+A VLQ Sbjct: 181 DKIFGGPPGSADEDGDRFVEIWNLVFMQYEQVSKDKRIELPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI+ S+++TG++ G+ +V+HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFSALIRESQRITGVEATGDFVVSHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM YA L E LM L+PAL EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRYAHFLDAKELLMWRLVPALIREMGQAYPELVRAESLISEILKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ HL + + NG+VAFKLYDT+G PLD+ QD L RG +D+ +FN Sbjct: 361 KTLERGLRLLNEESVHLKEGDCFNGEVAFKLYDTYGFPLDLTQDALRHRG-ISVDVNAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ ARA+ G G TE +WFS++++ G T+F+GY+ Sbjct: 420 KAMEHQKAEARANWSGSGESVTETVWFSVRDQVGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A++ GEIV++ SGQK +V +QTPFY E+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGVITALICDGEIVDKVSSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKKA+G+FVH V+ G +T + L +D RR++ NHSATH+LH AL Sbjct: 517 IFEVHDTQKKAKGVFVHIGEVKSGQAKTHDCVELAVDCVRRRKIRANHSATHILHKALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS ++PD LRFD +HS I +LK IED N+I+ QN V+TR+M +DA Sbjct: 577 TLGDHVVQKGSFVSPDRLRFDFSHSGQILLKDLKKIEDLANEIVLQNSEVITRLMTVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY+D VRVVS+ S LCGGTHV TGEI L++IVS S Sbjct: 637 ISEGAIALFGEKYSDEVRVVSMGKRHEEIGEKDYWSIELCGGTHVHRTGEIGLIHIVSVS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG AR + Q ++L +A+ LK+ N+ ++ + ++YR++ Sbjct: 697 SVAAGVRRIEALTGTAARLYFRNQYKQLYDIAALLKMPSVFNLSKNIQGLLDDYRRIGKE 756 Query: 774 HAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + ++ D + I ++FM +I + K+LK+++D+ +K+I SG++ Sbjct: 757 LSNLRTKIAFNDGATKDNKADIKIINGISFMGRVIQNISPKDLKTLVDSGKKQIGSGVVA 816 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 +GIS+ K SV++ VT+DL+DR +AVDL R+ + LGG GGGGRP MAQ+GGP G+KA Sbjct: 817 FIGISENGKGSVVVGVTDDLVDRLSAVDLVRIVSDTLGGKGGGGRPDMAQAGGPQGDKAY 876 Query: 887 QAIAGVASFLK 897 AIA + FL+ Sbjct: 877 DAIAALEVFLE 887 >gi|258404449|ref|YP_003197191.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692] gi|257796676|gb|ACV67613.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692] Length = 880 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 373/908 (41%), Positives = 542/908 (59%), Gaps = 43/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+F + GHE++ SS L+P +DP+L+FTN+GMV FK +F GQ+K Y Sbjct: 1 MVTAAEIRQRFLEYFARQGHEIVKSSPLVPKDDPSLLFTNAGMVQFKKVFLGQDKRNYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK A+ AW LT+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAVDFAWRFLTEELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY +VY ED+EA++LWK+I+GL ++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKDRLYASVYREDDEAYELWKEIAGLPDERIYRLGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + G E +R++EIWNLVFMQF++ LP+ SIDTGMGLER+A V Q Sbjct: 181 SHMSCGPECEIGVCECDRFLEIWNLVFMQFDRDASGTMTPLPQPSIDTGMGLERIAAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF LI+ + + G+ Y + +N RVI DH R+ +F++ADGILP+NEG Sbjct: 241 GVYSNFDTDLFSGLIRTTAERAGVVYGKDEEINTALRVIGDHSRAVAFMLADGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RL+G +P + + + +EMG YPEL + + + +R E+E Sbjct: 301 RGYVLRRLIRRAFRFGRLIGLRDPFLFDVCSQVVSEMGDDYPELHETAAFMVKVVRQEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RFG TLD+GL LL+ L L + G VAFKLYDT G P+DI+ D+ ARG +D Sbjct: 361 RFGTTLDKGLALLEEELESLQGAGQTQVPGGVAFKLYDTFGFPIDIVNDVAEARGFT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + ++ Q+ R++A G G+ + +L E + F+GY+ L+ Sbjct: 420 EAGFQEHMQAQKERSKAAWSGSGATDMAARFVALLEAGVQSDFVGYETLQS--------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +S + A+++ G+ V+E +G+ +V +TPFY E+GGQ+GD+G Sbjct: 471 --------------TSRIAALLKDDGQEVQELAAGENGYLVTARTPFYGESGGQVGDSGR 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 IG + D K A + VH V++G L + L +D R + NH+ THLL Sbjct: 517 VIGPRGDGAVLDTIKPAAQLTVHSITVKQGSLAVDDEAELIVDEGERVATARNHTVTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + D LRFD+TH + +T+ E++++ED VN I + PV + Sbjct: 577 HAALREVLGEHVKQAGSLVASDRLRFDLTHIQALTAEEIQAVEDKVNQSILADTPVESAH 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ A+ GA AL G KY D VRV+ + S LCGGTH+ +TG+ I+SE Sbjct: 637 MDYSQAVQGGAVALFGEKYEDEVRVIDIPG-----VSRELCGGTHLRATGQAGFFCILSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +++ AG+RRIEA TG +A Q +L+ A LK Q + GR++++ E+ + L+ Sbjct: 692 AAVSAGVRRIEAATGWQAVRTFTEQRTRLREAAQLLKAPQTEITGRIQDLQEQLKSLRKE 751 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + QL ++ + ++ + D K L+ +MD ++ K+ SG+++L Sbjct: 752 KEALEGQLQSAKGGDLMSQVEELGGIPVLTAEVEAPDVKTLRGMMDDVRSKLSSGVVLLA 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +E KA +++ V++DL DRF A L + A+ + GG GGGRP +AQ+GG N A Sbjct: 812 A-KQEAKAMLILFVSQDLHDRFTAPGLIKQVAQEI-GGSGGGRPDVAQAGGGNPEGIPAA 869 Query: 889 IAGVASFL 896 + + + + Sbjct: 870 LDSLRNLV 877 >gi|296135261|ref|YP_003642503.1| alanyl-tRNA synthetase [Thiomonas intermedia K12] gi|295795383|gb|ADG30173.1| alanyl-tRNA synthetase [Thiomonas intermedia K12] Length = 917 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 374/953 (39%), Positives = 531/953 (55%), Gaps = 96/953 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 NVS IR FL +F+ G + SSSL+P NDPTL+FTNSGMV FK++F GQ++ Y+ Sbjct: 1 MNVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQE------------------ 215 IF+D G + GG PGS E+G+RYIEIWNLVFMQFE+ E Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFETEDQATARKQAVEA 240 Query: 216 --------------------RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 + LPK +DTGMGLER+A VLQ +NY+IDLF+ LI+A Sbjct: 241 EGGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKA 300 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 + + T G+ + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ + L Sbjct: 301 AARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKL 358 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G +P ++P L +MG+AYPEL +A+ + E L++E+ RF +T++ G+ +LD L+ Sbjct: 359 GVRQPFFYKMVPDLVAQMGAAYPELAEAQGRVAEVLQAEEARFFETIEHGMGVLDTELAA 418 Query: 376 LGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433 L +L G++AFKL+DT G PLD+ QD+ G+ +D +F+ A+ QR +ARA Sbjct: 419 LRAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDVAMARQREQARAAG 477 Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493 + + T+F GY+ L + V Sbjct: 478 KFKMQAALDYV-------GDKTRFDGYEHLLVK----------------------EARVV 508 Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKA 550 A+ + G V +G VV D+TPFYAE+GGQ+GD+G +R + D QK Sbjct: 509 ALYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCDLRFVVHDTQKLQ 568 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610 +F HH +E G L+ + +D + R + NHS THL+H AL +LG HV Q GS Sbjct: 569 ADVFGHHGTLESGSLKVGEIVAAQVDGERRLAVMRNHSVTHLMHKALRLVLGDHVQQKGS 628 Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670 + D RFD H P++ E+ +E VN+ I N R+M ++A GA L G Sbjct: 629 LVDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGMGAMMLFGE 688 Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 KY D VRV+ + S LCGGTHV+ TG+I L IV E + AGIRR+EA+TG Sbjct: 689 KYGDTVRVLDIG------TSRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAVTGLN 742 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED----- 785 A + + Q+ + L+ LK +VE++ E+ R+L+ + K Q Sbjct: 743 ALAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLTQLKAQQAAAQGDALV 802 Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 I + + + +D+K L+ +D ++ K+++ +++L + K + V+ D Sbjct: 803 SQAFTIGGTSVLLARMDGLDAKGLREAVDRIKSKLKTAVVLLASREGD-KVQLAAGVSAD 861 Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + + A DL ++A+ + GG GGGRP A +GG + D A+A S L++ Sbjct: 862 RVGQIKAGDLVSVAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913 >gi|149202694|ref|ZP_01879666.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035] gi|149143976|gb|EDM32010.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035] Length = 893 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 439/899 (48%), Positives = 581/899 (64%), Gaps = 41/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 3 MPTLNEIRSTFLSFFERNDHRVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHRDYVR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F + Sbjct: 63 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA +WKK +GLS D+IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 123 DKSKLLVTVYHTDDEAANIWKKYAGLSDDRIIRIKTDDNFWSMGSTGPCGPCTEIFYDHG 182 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 183 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGSMRALDMQSIDTGMGLERIGALLQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFL+ADG++P+NEGRGY Sbjct: 243 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG A+PEL +A+ +IEETL+ E+ RF Sbjct: 303 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVAQMGQAFPELGRAQAMIEETLKLEETRFK 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD LS L + L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 363 QTLERGLRLLDDELSDLAEGAALPGVTAFKLYDTYGFPLDLTQDALREKGR-DVDTAGFD 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + E+ G T F+GYD Sbjct: 422 AAMAEQKAKARAAWAGTGEAADQAVWFDIAEEKGTTDFLGYD------------------ 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G V A G+ V++V +QTPFYAE+GGQ+GD+G + Sbjct: 464 -----TERAEGQIVALVRDGVRVSAATMGESVQIVLNQTPFYAESGGQVGDSGLLKTETG 518 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++++TD KK G+FVH A+VE G ++ + L + + R + NHSATHLLH AL Sbjct: 519 QVRVTDT-KKVAGVFVHIAVVETGEIKAGQAAQLEVSHARRSAIRANHSATHLLHEALRG 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++AEL+ +E VND I QN PV TRIM +DA Sbjct: 578 ALGEHVAQRGSLNAEDRLRFDFSHAKALSAAELERVEREVNDYIRQNAPVETRIMAPDDA 637 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I + ++ Sbjct: 638 RALGAQALFGEKYGDEVRVVSMGQAEGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALA 697 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES+ AG+RRIEA+TG A +L GQ +L +AS LK +V RV+ + EE R L Sbjct: 698 ESASSAGVRRIEALTGAAAFDYLSGQAARLGQVASDLKARPEDVAERVKVLMEERRALAN 757 Query: 773 IHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A+ + +L + ++ V ++ +++ V K+L ++D + ++ SG + Sbjct: 758 EVAQLRRELAMSGGAGQGGGAEAREVGGVKLIAQVLTGVQGKDLPPLIDEHKARLGSGAV 817 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L+ K +V VTEDL DR +AV++ R + LGG GGGGR MAQ GG + + Sbjct: 818 LLIA-DTGGKVAVAAGVTEDLTDRISAVEMVRAAVAELGGKGGGGRADMAQGGGTSMDG 875 >gi|161830958|ref|YP_001596677.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331] gi|205830041|sp|A9NCN7|SYA_COXBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161762825|gb|ABX78467.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331] Length = 865 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 368/903 (40%), Positives = 543/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 61 VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS+E +G+RY+EIWNLVFMQ+ + K L K S+DTGMGLER+ V+Q Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLTAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLF++L++A + + + + RVIVDH+RS +FLIADG++P+NEGRGYV Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLLEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++ Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR +++ + + + G TQF+GY+ L Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + V +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L + D+ ++ + VD + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT++ L+ FNA +L A+ + GG GGRP +AQ G + A+A V + Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858 Query: 896 LKK 898 ++K Sbjct: 859 IEK 861 >gi|260549963|ref|ZP_05824178.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624] gi|260406955|gb|EEX00433.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624] Length = 883 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 394/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 66 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDRLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 186 SEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARRDVIEATL 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI RG Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + S+ + G TQF GY Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY----------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+ ++ + R + NHSATH Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKANQNVEAIVKADIREATARNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N PV T Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTPVTT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E L Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + VD+K L+++ D+++ K+++ +I Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869 Query: 886 DQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 870 GQVIAALPAWLEQ 882 >gi|197119994|ref|YP_002140421.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem] gi|197089354|gb|ACH40625.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem] Length = 875 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 389/906 (42%), Positives = 539/906 (59%), Gaps = 43/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F FFQK GH L+ SS+LIP NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MTGKEIRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKRDYLRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLS 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA +W G+ ++I R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 KDRLYVTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWN VFMQF + LPK S+DTGMGLER++ V+Q Sbjct: 181 GTGCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLTPLPKPSVDTGMGLERISAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 T+NYD DL + +I+ EQV+G KY + + V+ RVI DH R+ +FLI DG+LP+NEGR Sbjct: 241 VTSNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG EP++ ++ A+ MG AYPEL++ + +++ + +E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLFRIVDAVNMMMGDAYPELLEREHYVKKVILAEEER 360 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ + +++++G+V FKLYDT G P+D+ DI+ + G +D Sbjct: 361 FIETLDRGLAILNEETAALKAKGEKVISGEVIFKLYDTFGFPVDLTADIVESEGFT-LDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR +AR + G G I+ L T F+GY Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYSE------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + AIV+ G +VEEA +G ++E+V TPFY E+GGQ GDTG Sbjct: 467 ----------QTAFSTISAIVKGGTLVEEASAGDEIEIVTAATPFYGESGGQAGDTGTIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +++T + + VH V G +RT + L I NR + NH+ATHLL Sbjct: 517 TGSGHIEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVANRAATARNHTATHLLQA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS +TPD LRFD TH P+T E++ +E VN I N V +R M Sbjct: 577 ALREVLGDHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSTVESREMP 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 DA+A+GA AL G KY D V G SS LCGGTHV GEI I+SE+ Sbjct: 637 AADALAAGATALFGEKYGDVV-----RVVKVGDVSSELCGGTHVHGAGEIGFFKIISEAG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA TG A + + G +++ + +A+ LK G V+ +VE++ R+LQ Sbjct: 692 IAAGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELE 751 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN + + + +S + D+K L+ + D L+++I SGII+L G Sbjct: 752 TLQARLNASKSADLIQQVREQNGIKILSVKVDG-DAKGLRELSDTLKQRIGSGIIVL-GT 809 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S +A++L+ VT DL R+ A D+ + A ++ GG GGG+P +AQ+GG +A+ Sbjct: 810 SDAARANLLVAVTADLSARWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALE 868 Query: 891 GVASFL 896 V + Sbjct: 869 AVYQIV 874 >gi|89092119|ref|ZP_01165074.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92] gi|89083854|gb|EAR63071.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92] Length = 854 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 380/902 (42%), Positives = 522/902 (57%), Gaps = 60/902 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FLEFF++ GHE++ SSSLIP NDPTLMFTN+GMV FK++F G +K Y Sbjct: 4 MTSAEIRQAFLEFFKQQGHEIVASSSLIPANDPTLMFTNAGMVQFKDVFLGTDKRNYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT+ L Sbjct: 64 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWTFLTETLGLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++TV+ D+EA ++WK+ G+ ++ ++ DNFWSM +TGPCGPC+EIFFD G Sbjct: 124 KERLWVTVHHSDDEAERIWKEEIGVDPERFSKL-DEDNFWSMGDTGPCGPCTEIFFDHGA 182 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS E+G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLER+A V+Q Sbjct: 183 DVWGGPPGSPEEDGDRYIEIWNVVFMQYNRSADGEMTPLPKPSVDTGMGLERIAAVMQNV 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID+F++L++A+ G + + RVI DH+RS SFLI DG+LP+NEG GYV Sbjct: 243 HSNYEIDMFQNLLKATAAAVGTTDM--DNKSLRVIADHIRSCSFLIVDGVLPSNEGAGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG P L+ AL EMG AYPEL + + +E L E+E+F K Sbjct: 301 LRRIIRRAVRHGNKLGAKGPFFNQLVEALVKEMGEAYPELAEKQSQVERVLLKEEEQFAK 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD G+ LL + L ++ G+ FKLYDT+G P D+ D+ L ID F + Sbjct: 361 TLDHGMRLLHEAIEGLD-GTVIPGETVFKLYDTYGFPHDLTADVAREHELT-IDEEGFER 418 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR RARA G + + G T F GY+LL Sbjct: 419 EMEAQRERARAA------GKFSVDYNDAIKLEGETSFTGYELLESDA------------- 459 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S V A+ ++GE V+ +G+ VV D+TPFYAE+GGQ+GDTG A+ Sbjct: 460 ---------STVVALFKEGEAVDTLQTGETGLVVLDETPFYAESGGQVGDTG-ALNASAS 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + K +HH VE+G L + +D R+ +++NHSATHLLH AL + Sbjct: 510 VFAVTNCTKEGKNNLHHGSVEQGSLSVGDKVAPQVDAVRRKAIALNHSATHLLHEALRVV 569 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS LRFD +H + +T ++ +E VN I N VVT IM E A Sbjct: 570 LGEHVQQKGSLNDDQRLRFDFSHFEAVTPEQIAEVEALVNQQIRDNSEVVTEIMEIEAAK 629 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GAAAL G KY+D VRV+++ GG S LCGGTH TG+I LL I SE + AGI Sbjct: 630 AKGAAALFGEKYDDVVRVLTM----GGDFSVELCGGTHAKRTGDIGLLKITSEGGVAAGI 685 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RR+EA+TG A + Q +G +++E + R+L+ + K + Sbjct: 686 RRVEAVTGAVALDYFADQ--------------KGQFEAKLQEQQAKTRQLEKELEQMKAK 731 Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + V ++ + V+ K L+ +D L+ K+ SG+++L + K Sbjct: 732 LAAAKGADLVSNAVDVKGVKVLAAKLEGVEPKALRDTIDQLKNKLGSGVVVLA-TESDGK 790 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT++L + A DL + L GG GGGRP AQ GG + + A+ VA Sbjct: 791 IALAAGVTKELTSKVRAGDLIKELTAKL-GGKGGGRPDFAQGGGTDLQALEGALDSVAGL 849 Query: 896 LK 897 ++ Sbjct: 850 VE 851 >gi|163741065|ref|ZP_02148457.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10] gi|161385418|gb|EDQ09795.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10] Length = 883 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 435/893 (48%), Positives = 575/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT + G+ V+HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL +A+ +IEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G AFKLYDT G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELAGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + ++ G T F+GY+ Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++ G V EA G V+VV +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEAAEGQIMALLVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD KKA G+F+H VE G++ + L +D+ R + NHSATHLLH AL Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ EL+ + +VN I QN V TRIM +DA Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSAEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ +DG +S LCGGTHV TG+I I+S+ Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEIANSLKAQPEEVMDRLKALMDERKALQNE 754 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K Q+ + ++ F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|328543180|ref|YP_004303289.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum SL003B-26A1] gi|326412926|gb|ADZ69989.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum SL003B-26A1] Length = 887 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 469/894 (52%), Positives = 612/894 (68%), Gaps = 38/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F KNGH+++ S L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSAFLDYFAKNGHQVVESGPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRDYAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKEF L Sbjct: 61 AATSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EA LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 AKDRLLVTVFAEDDEAHGLWKKIAGFSDDRIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS+ E+G+R+IEIWNLVFMQ+EQ Q R LP+ SIDTGMGLER+A VLQ Sbjct: 181 EHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQTP-QARLPLPRPSIDTGMGLERIAAVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS TG++ +G+ +HRVI DHLRSS FLIADG+LP+NEGRGY Sbjct: 240 VHDNYDIDLFRALISASVNATGVEADGSARASHRVIADHLRSSCFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG EPLM L+PAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGAQEPLMWRLVPALIREMGRAYPELVRAEALITETLRLEEGRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L + L+G+ AF+LYDT+G PLD+ QD L ARG G+D F Sbjct: 360 KTLERGLGLLDAATVDLSEGGELDGETAFRLYDTYGFPLDLTQDALRARG-IGVDTAGFA 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G T+ +WF LKEK GAT+F+GY+ Sbjct: 419 AAMERQKAEARAAWAGSGEAATDAVWFGLKEKCGATEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A+V G V E +GQ VF+QTPFY E+GGQ+GDTG G+ Sbjct: 461 -----AERAEGAVAALVADGREVSELATGQSGFAVFNQTPFYGESGGQVGDTGSLHALGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++TD QKKA+G+FVH VE G L ++L + +D R + NHSATHLLH AL Sbjct: 516 KARVTDTQKKADGLFVHAVTVEEGTLSVGLALDMIVDPDRRTAIRSNHSATHLLHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD +H KP++ ELK +ED N+I+ QN V TR+M ++A Sbjct: 576 VLGGHVAQKGSLVSPERLRFDFSHPKPMSEDELKVVEDYANEIVLQNAAVETRLMAVDEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I SGA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ +V+E Sbjct: 636 IESGAMALFGEKYGDEVRVVSMGTALHGDKAGKAYSVELCGGTHVRRTGDIGLVRLVTEG 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG AR++L QD +++ LA LKV +V RV ++ E+ R+L+ Sbjct: 696 AVAAGVRRIEALTGPVARAYLDEQDARVRELAGLLKVGAADVTARVAQLVEDRRRLEREL 755 Query: 775 AKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ K +L + + + M+ I+ ++ K+LK + D ++ SG+++L Sbjct: 756 AEAKKKLAMGGGGGEAGAAVVKMVGSLRLMARIVEGINPKDLKGLADETMAQVGSGVVVL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + ++++ KA+++ V++DL DR +AVDL RL ++ LGG GGGGRP MAQ+GGP+ Sbjct: 816 ISVAEDGKAAIVTAVSKDLTDRVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPD 869 >gi|319944272|ref|ZP_08018548.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599] gi|319742567|gb|EFV94978.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599] Length = 882 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 359/905 (39%), Positives = 532/905 (58%), Gaps = 54/905 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +L+FF+ GH ++ SS ++P +DPTL+F N+GM FK++F G +K Y Sbjct: 1 MMKSAEIRQQYLKFFESKGHTIVASSPVVPHDDPTLLFANAGMNQFKDVFLGFDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+LLT F L Sbjct: 61 ATTAQKCIRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFAWELLTTVFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 +L +TVY ED+EA+ +W K G+ AD+I+RI N DNFW M +TGPCGPC+ Sbjct: 121 PPEKLLVTVYAEDDEAYDIWAKQVGVPADRIVRIGDNKGARYASDNFWMMGDTGPCGPCT 180 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G + GG PGS E+G+R+IEIWN+VFMQ+ + E LP+ S+DTGMGLER Sbjct: 181 EIFYDHGPEVAGGPPGSPEEDGDRFIEIWNIVFMQYNRDESGELHPLPRPSVDTGMGLER 240 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 +A VLQ +NY+IDLF +L+ A+ +V + +VI DH+R+ F I DG+ Sbjct: 241 VAAVLQHVHSNYEIDLFVNLLAAAAKVVQDAGGTPETGSPSLKVIADHIRACCFTIVDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+ + +G +P + L+PAL EMG AYPEL + + IEE Sbjct: 301 VPGNEGRGYVLRRIIRRAVRHGYKMGARQPFLYSLVPALVKEMGEAYPELKRDQARIEEV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L+ E+ RF +T+ G+ LL+G L+ L ++L+G+ AF+L+DT+G PLD+ D+ RG+ Sbjct: 361 LKGEESRFFETIANGMSLLEGALAGLKGKKVLDGETAFRLHDTYGFPLDLTADVCRERGV 420 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F A+ QR +ARA G+ L+ T+F+GYD L Sbjct: 421 T-VDEAGFETAMAHQREQARAAGRFKGASL-------LEYDGETTRFVGYDEL------- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G+ +E +G + VV D +PFYAE+GGQ+GD Sbjct: 466 ----------------SAQARVLALYHDGKPAQELKAGDEGVVVLDVSPFYAESGGQVGD 509 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G G+R ++D QK ++ HH VE G L+ ++ ++ R++ + NHSAT Sbjct: 510 QGHLQGQGLRFAVSDTQKIQAAVWGHHGRVEEGSLKVGDTVQAQVNTALRQKTTRNHSAT 569 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS + PD RFD +H+KP+T E++++E VN I N V Sbjct: 570 HLLHKALRQVLGDHVAQKGSLVDPDHTRFDFSHNKPMTPEEIQAVEAIVNAEIRSNTATV 629 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 R M+ ++AIA+GA AL G KY D + LCGGTHV+ +GEI + I Sbjct: 630 IRQMSYDEAIAAGAMALFGEKYGDV------VRVVDVADTRELCGGTHVARSGEIGVFKI 683 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AGIRR++ +TG+ A + + Q L +A+ ++ V RV ++ + + L Sbjct: 684 ASEGGVAAGIRRVDGLTGEGALAWIQQQLATLAEVAAAVRAPVAEVPARVAQLQTQVKDL 743 Query: 771 QLIHAKRKLQLNV---EDLSCHKIA---DVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + K ++L+ + + + +D+K L++ +D L+ +++S + Sbjct: 744 GRELDRVKASAASSQGQNLAAQATVLPCGAHLLVTRVDGMDAKALRATVDQLKDQLKSLV 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L + K ++ VT DL++ A ++ A + GG GGG+P A +GG + Sbjct: 804 VVLASVEGNDKIQLVAGVTPDLVNTVKAGEMLGRVAAQV-GGKGGGKPDFAMAGGNDVAA 862 Query: 885 ADQAI 889 + + Sbjct: 863 LEGVL 867 >gi|209694226|ref|YP_002262154.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] gi|208008177|emb|CAQ78320.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] Length = 860 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 370/910 (40%), Positives = 531/910 (58%), Gaps = 68/910 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 RL +T+Y+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 ADRLLVTIYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRLADGTMEPLPKPSVDTGMGIERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+ + +V + Y+ + + RV+ DH+RS S+LI DG++P+ Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKETAKV--VGYDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ L+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L +L +L+G+ FKLYDT+G P D+ D+ R L I Sbjct: 361 EEENFGRTLERGMVILNEALDNLE-GTVLDGETVFKLYDTYGFPADLTNDVARERELT-I 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+ EQR RAR G + ++ + T F GYD Sbjct: 419 DEDGFEKAMNEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDFTE--------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V I +GE VE +G ++ D TPFYAE+GGQ GD G Sbjct: 464 --------------AKATVLEIFCEGEAVETLSAGDDAILILDVTPFYAESGGQSGDAGI 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + +TD QK HH + G+L T + +D + R +++NHSATHLL Sbjct: 510 ITVEAGKFVVTDTQKVGN-AIGHHGKLVEGVLSTADRAMAQVDEERRTAITLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD ++ + + EL+ +E VN + N + T + Sbjct: 569 HAALRQVLGEHVTQKGSLVKAESLRFDFSNLEGVKPEELRLVERIVNQQVRLNHAIETDL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 629 MDVDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG+ A + Q + ++ + + + L+ Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIESQQKLAD--------------KKLHDASSKTKLLEKE 729 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K +L + S I+ V + + D+K L+ ++D L+ +I SG+IM+ Sbjct: 730 IQQLKDKLASQASSDLISQVQDISGVKVLITQLDGADNKALRGMVDELKNQIGSGVIMIG 789 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S + K ++ VT+DL+ + A +L + A + GG GGGRP MAQ+GG + A Sbjct: 790 NVS-DDKVGLIAGVTKDLIGQVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAKALPAA 847 Query: 889 IAGVASFLKK 898 +A V ++L + Sbjct: 848 LATVEAWLTE 857 >gi|153206762|ref|ZP_01945603.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165918516|ref|ZP_02218602.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334] gi|212218396|ref|YP_002305183.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] gi|120577125|gb|EAX33749.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165917762|gb|EDR36366.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334] gi|212012658|gb|ACJ20038.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] Length = 865 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 368/903 (40%), Positives = 544/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 61 VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS+E +G+RY+EIWNLVFMQ+ + K L K S+DTGMGLER+A V+Q Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLF++L++A + + + + RVIVDH+RS +FLIADG++P+NEGRGYV Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++ Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR +++ + + + G TQF+GY+ L Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + V +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L + D+ ++ + V+ + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVERETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT++ L+ FNA +L A+ + GG GGRP +AQ G + A+A V + Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858 Query: 896 LKK 898 ++K Sbjct: 859 IEK 861 >gi|300113492|ref|YP_003760067.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113] gi|299539429|gb|ADJ27746.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113] Length = 874 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 395/906 (43%), Positives = 552/906 (60%), Gaps = 49/906 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + +RT FL++F++ GHE++PSS L+P NDPTL+FTN+GMV FK +F G+E Y Sbjct: 1 MKSSAELRTIFLDYFRRQGHEIVPSSPLVPANDPTLLFTNAGMVQFKEVFLGREARTYDR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ L Sbjct: 61 AASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++TV+ ED+EA +W + G+S ++ R DNFWSM ETGPCGPCSEIF+D G Sbjct: 121 PPERLWVTVFKEDDEAANIWLRGIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGSSE EG+RY EIWNLVFMQ+++ + LP+ S+DTGMGLER+A V+Q Sbjct: 181 PEIAGGPPGSSEQEGDRYTEIWNLVFMQYDRDKEGRLSPLPRPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLF+HLI A + G++ + RVI DH+RS +FLI DG+ PANEGRGY Sbjct: 241 VHNNYDIDLFRHLIAAITALPGVQ--NQEQTSLRVIADHIRSCAFLIVDGVQPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +LG +P HL L EMG AYPEL++ + +E L+ E+ERF Sbjct: 299 VLRRIIRRAIRHGHVLGLRDPFFYHLAQPLVQEMGEAYPELVRLQSQVERVLKLEEERFN 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL +L+ + HL D ++ G+ F+LYDT G P+D+ DI R L+ +D+ F Sbjct: 359 ETLEQGLKILEQDIIHLS-DGVIPGETIFRLYDTFGFPVDLTADIARERKLS-LDMKGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+ QR RARA S + E++ +L T+FIGY+ L Sbjct: 417 QAMARQRERARAASRFSEEYSAEELQINL-----ETEFIGYEQL---------------- 455 Query: 480 PPIDLTNGVSSIVKAIV---QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V A+ + E VE+ +G+ VV DQTPFYAEAGGQ+GD G G Sbjct: 456 -------CAKGQVVALFCLAETMEAVEQLNAGESGMVVLDQTPFYAEAGGQVGDRGTLHG 508 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +TD +K+ VH V G LR S+ ++ Q R +NHSATHLLH A Sbjct: 509 SSGLFNVTDTRKQGA-AHVHLGEVRLGQLRIGDSIQSEVNRQYRTPTRLNHSATHLLHAA 567 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG V+Q GS + D LRFD +H + + S +L+ IE +N I NLPV T++M Sbjct: 568 LREVLGESVAQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLINAKIRANLPVETQLMPL 627 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ +G AL G KY ++VRV+ + G S LCGGTHV TG+I L I++E + Sbjct: 628 QQALDAGVVALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGV 682 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA+TG+ A S + + L++L LK S+ + V ++E++ ++ R+ + + Sbjct: 683 AAGIRRIEAVTGEAALSWVEESEVCLEALMGRLKASRDSAVDKLEQLQQQNRQQEKELQR 742 Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L ++ + ++ I VDSK L++ +D L+ K+ ++L G Sbjct: 743 LKAKLATAGGADLSAQAQEVRGIKVLAARIDGVDSKTLRATVDQLKGKLTIAAVVL-GTV 801 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K ++ VT++ DR A DL A+ + GG GGGRP MAQ+GG + + D A+ Sbjct: 802 AEGKVVLIAGVTKNATDRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRHPDNLDAALGL 860 Query: 892 VASFLK 897 V +++ Sbjct: 861 VPKWVE 866 >gi|77464020|ref|YP_353524.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1] gi|123591443|sp|Q3J0R1|SYA_RHOS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|77388438|gb|ABA79623.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1] Length = 883 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 433/874 (49%), Positives = 570/874 (65%), Gaps = 37/874 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA ++WKK++GL ++IIRI TNDNFW M TGPCGPC+EIFFD G Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ L HL + L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E +GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G A +GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGAGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV KK +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HS+ ++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ DG +S LCGGTHVS G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG+ A ++L Q ++L +A+ LK + +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755 Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ + + + +I V F++ ++ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 KA++ VT DL DR +AV L + +A+ L Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848 >gi|308048574|ref|YP_003912140.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799] gi|307630764|gb|ADN75066.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799] Length = 876 Score = 882 bits (2280), Expect = 0.0, Method: Composition-based stats. Identities = 370/896 (41%), Positives = 526/896 (58%), Gaps = 57/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IRT FLE+F+ GHE++ SSSL+P NDPTL+FTN+GM FK+ F G E+ Y Sbjct: 3 MTTAEIRTAFLEYFRSQGHEVVASSSLVPHNDPTLLFTNAGMNQFKDCFLGAEQRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKFAWQFLTEVLQLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + +L +TVY D+EAF +W K G++A+ IIRI DNFW M +TGPCGPC+ Sbjct: 123 KDKLCVTVYHTDDEAFDIWNKEIGIAAENIIRIGDKPGKPAYTSDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG P E+G+R+IEIWN+VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQFNRHADGTMDPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A ++Q +NYDID+F+ LI+ + ++TG + + RV+ DH+RS ++LI DG++P Sbjct: 243 VAAIMQGGHSNYDIDIFQRLIKKAAEITGTTD--LDNKSLRVVADHIRSCAYLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + R LG + L+ L MG+A EL Q + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGRKLGANDTFFFKLVGELADVMGAAGEELKQQQAIVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E F +TL+RG+ LL+ L +L ++L+G FKLYDT+G P D+ D+ RG + Sbjct: 361 IEEEGFARTLERGMQLLNEALDNLD-GDVLDGATVFKLYDTYGFPADLTNDVARERGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +E+QR RAR +G + + + F GYD Sbjct: 419 IDEDGFEVEMEQQRQRAR------DAGQFGTDYSKVVSIDSDSVFTGYDRTDD------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA--VSGQKVEVVFDQTPFYAEAGGQLGD 530 V AI+ +G V+ G +V DQ+PFYAE+GGQ+GD Sbjct: 466 ----------------QGKVVAILVEGNEVDSLMGERGTDAVLVLDQSPFYAESGGQVGD 509 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG ++TD QK H + G + ++ +D R + +NHSAT Sbjct: 510 TGVIRCGDAEFEVTDTQKLGN-AIAHKGKLVSGAFQRGDAVAAEVDASRRDAIRLNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS + D LRFD +H + ++ EL +IE+ VN+ I N + Sbjct: 569 HLLHAALRNLLGDHVTQKGSLVMADRLRFDFSHFEGVSRDELVAIENQVNEQIRANHSID 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M+ E A A GA AL G KY+D+VRV+++ G +S LCGG H TG+I I Sbjct: 629 TELMDIEAAKARGAMALFGEKYDDQVRVLAM-----GDYSIELCGGIHAKRTGDIGFFKI 683 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE I AGIRRIEA+TG A + Q+ +L A+ +K +V +V+ + ++ R+L Sbjct: 684 VSEGGIAAGIRRIEAVTGNGAVAFARSQENQLLETAALVKGDAQSVASKVKGLLDKNRQL 743 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L S + V + + DSK L+ ++D L+ ++ SGI+ Sbjct: 744 EKELEQLKQKLASAASANLVDSAVDMGGVKVLISQLENADSKALRGMVDDLKNQMGSGIV 803 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +L ++ + K ++ VT+DL + A +L L A+ + GG GGGRP MA +GG + Sbjct: 804 LLGNVA-DGKVGLIAGVTKDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAMAGGTD 857 >gi|319790646|ref|YP_004152279.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1] gi|317115148|gb|ADU97638.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1] Length = 878 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 375/907 (41%), Positives = 542/907 (59%), Gaps = 43/907 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL+FF++ GH + SS L+P NDPTL+FTN+GMV FK+ F G+E+P ++ T Sbjct: 4 SADRIRETFLKFFEEKGHARVKSSPLVPKNDPTLLFTNAGMVQFKDYFLGKEEPPFKRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+ F L + Sbjct: 64 SCQKCMRAGGKHNDLENVGRTGRHHTFFEMLGNFSFGDYFKEEAIKFAWELVTEVFKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY++VY EDEEAF++W+ + G+ ++I R+ DNFW+M +TGPCGPCSEI++D+GE Sbjct: 124 ERLYVSVYKEDEEAFRIWRDVVGVPQERIYRLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 183 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G S + +RY+EIWNLVFMQFE+ + L K SIDTGMGLER+A+VLQ Sbjct: 184 FACGPNCGIGSCDCDRYLEIWNLVFMQFERDESGKLRPLEKPSIDTGMGLERIASVLQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY+ DL L++ + +++G+ Y + + RVI DHLR+ +FLI+DG+LPANEGRG Sbjct: 244 PSNYETDLLFPLVKWASKLSGVPYGRSEKSDTSMRVIADHLRAMTFLISDGVLPANEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA + RLLG P + + + MG AYPEL ++ L+E +R E+ERF Sbjct: 304 YVLRRIIRRASRHGRLLGIKGPFLYSGVKEVVKIMGKAYPELELSRELVERVVRREEERF 363 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL+RGL + ++ L ++++ G FKLYDT G P+D++ ++ GL +D+ Sbjct: 364 SRTLERGLQIFQEIIDELKSRSEKVIPGSEVFKLYDTFGFPIDLVLEVANDEGLR-VDLE 422 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + L+EQR RAR G L ++ T F GY+ L Sbjct: 423 GFEKLLKEQRERARKAWKGGAQKVVSPELQRLSLEH-PTLFTGYEHLEEY---------- 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V I++ E+VE G++ V+ D+TPFY E GGQ+GDTG G Sbjct: 472 -------------AKVVGILKGEELVESISEGEEATVILDRTPFYPEKGGQVGDTGTLEG 518 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++TD Q E + H V RG L + +D + RR ++ H+ATHLLH A Sbjct: 519 TDSLCKVTDTQNITEKLIGHKVKVLRGKLSVGDYVEARVDEERRRAITRAHTATHLLHKA 578 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD LRFD TH + T EL+++E+ VN I +N PV M Sbjct: 579 LKEVLGNHVKQAGSLVLPDRLRFDFTHFEAPTKEELRAVEELVNRWITENYPVKIEEMPY 638 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+ GA AL G KY V D G S LCGGTHV +G+I + SESSI Sbjct: 639 DEALERGAIALFGEKYGSVV-----RVVDVGGVSVELCGGTHVKRSGDIGFFKLTSESSI 693 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G RR+EA+ G A + +++ ++ L L+ + + +VE + EE ++ + + Sbjct: 694 SSGTRRVEAVVGPEALKWVWEKEKLIEELKGALQSPEEQLTAKVERLKEELKEKERELEQ 753 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L L + + ++ + + +EL + DAL+ K +S +MLVG+ Sbjct: 754 LKRKLASGKLDELLKNAKEANGFKVITAKVDGLAGRELVDLADALRNKAKSAAVMLVGV- 812 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K KA+++I +T+DL +RF A +L R A +L G GGGRP +AQ G + ++ +A Sbjct: 813 KGGKANLVIALTKDLTNRFKAGELIREVAPIL-QGKGGGRPDLAQGGVKDLSRLQEAFDK 871 Query: 892 VASFLKK 898 S L + Sbjct: 872 FYSLLTE 878 >gi|134093868|ref|YP_001098943.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi|205830068|sp|A4G2S9|SYA_HERAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|133737771|emb|CAL60816.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 869 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 364/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+FF+ GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K Y Sbjct: 1 MKSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ +W+LLTK + L Sbjct: 61 TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALMWSWELLTKVYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSE 174 +L TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSE Sbjct: 121 GDKLLATVYIEDQEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG P E+G+RYIEIWN VFMQF+ LP +DTGMGLER+ Sbjct: 181 IFYDHGPHIAGGPPGSPDEDGDRYIEIWNNVFMQFDMAEDGTVKPLPAPCVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+ID F LI+A+ + T K NN + +VI DH+R+++FL+ADG++P+ Sbjct: 241 AAILQGVHSNYEIDTFAALIKAAGRETNTKDLTNN--SLKVIADHIRATAFLVADGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV RRI+RRA+ + LG +P L+ L +MG AYP+L I E L++ Sbjct: 299 NEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLQADAQRITEVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +TL G+ +LD L+ G ++L G+VAFKL+DT G PLD+ D+ G + Sbjct: 359 EEERFFETLANGMEILDAALA--GGVKVLPGEVAFKLHDTFGFPLDLSADVCREAG-VSV 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+E+Q++ RA K+ +++ F GY+ L+ Sbjct: 416 DEAGFAAAMEKQKAAGRAAGKF-------KMERAVEYTGAGNVFTGYENLQED------- 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V + +G V++ GQ VV D TPFYAE+GGQ+GD G Sbjct: 462 ----------------ATVVGLYFEGTAVQQLKEGQAGIVVLDTTPFYAESGGQVGDQGF 505 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G++ + D QK ++ HH + +G L+ + +D R NHS TH++ Sbjct: 506 VSAEGVQFGVEDTQKIKADVYGHHGVQTQGTLKVGDKVQAAVDGARRAATMRNHSVTHIM 565 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + + RFD H+ P+T ++ IE VN I N R+ Sbjct: 566 HKALREVLGEHVQQKGSLVDAEKTRFDFAHNAPVTHEQILEIEKRVNAEILANSDTQARV 625 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L +V E Sbjct: 626 MDIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGE 679 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG+RRIEAITG A S+ + + S A+ LK + R+ ++ ++ + L+ Sbjct: 680 SGVAAGVRRIEAITGANALSYFQDLEATVHSAAATLKSPPAELQPRLAQVLDQVKTLERE 739 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L +I + ++ + D+ L++ MD L+ K+++ I+L Sbjct: 740 INALKGKLASSQGDELLSQAVEIKGIKVLAAKLENADAGTLRTTMDTLKDKLKTAAIVLA 799 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGR MAQ+GG + + A Sbjct: 800 AV-NDGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRADMAQAGGTDASGLPAA 857 Query: 889 IAGVASFLKK 898 + GVA+++ + Sbjct: 858 LQGVAAWVAE 867 >gi|297539363|ref|YP_003675132.1| alanyl-tRNA synthetase [Methylotenera sp. 301] gi|297258710|gb|ADI30555.1| alanyl-tRNA synthetase [Methylotenera sp. 301] Length = 901 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 368/927 (39%), Positives = 530/927 (57%), Gaps = 72/927 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y T Sbjct: 10 SSNEIRKAFLDFFASKGHQIVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRTYTRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L + Sbjct: 70 SSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKDDAIAYAWELLTEVFKLPK 129 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY +D+EA+ +W G+ A++IIRI N DNFW M +TGPCGPC+EI Sbjct: 130 DKLTVTVYADDDEAYNIWHDKIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEI 189 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ GG P E+G+R+IEIWN VFMQF + LPK S+DTGMGLER++ Sbjct: 190 FYDHGDHHFGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGMMHPLPKPSVDTGMGLERIS 249 Query: 235 TVLQEKTNNYDIDLFKHLIQASE------------------QVTGMKYEGNNIVNHRVIV 276 VLQ NY+ID+FK LI A+ ++ E N + +V+ Sbjct: 250 AVLQHVHANYEIDIFKTLIDAAAREVFVTPSNQTYSVASLSELKSKYPEILNNPSLKVLA 309 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336 DH+R+ SFLIADG++P NEGRGYVLRRI+RRA+ + LG L+P L +MG A Sbjct: 310 DHIRACSFLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGTRAAFFYKLVPDLVKQMGEA 369 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTH 394 YPEL+ + I + L+ E++RF +T++ G+ +L+ L+ + + + NGD+AFKL+DT Sbjct: 370 YPELVANQSRIMDMLKLEEDRFFETIENGMEILETELATMSKANNTLFNGDLAFKLHDTF 429 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G PLD+ DI R +D +F+ A+ Q+ +ARA K+ +L+ Sbjct: 430 GFPLDLTADICRERD-VNVDSAAFDAAMTRQKEQARAAGKF-------KMATNLEYNGAN 481 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 T F GY+ L S+ + A+ + G V + G++ VV Sbjct: 482 TDFKGYETLE-----------------------ASAKILALYKDGTAVNQLSEGEQGVVV 518 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D TPFYAE+GGQ+GD G + + D QK +F HH I++ G + SL + Sbjct: 519 LDNTPFYAESGGQVGDNGVLKAENGIFAVEDTQKIQAAVFGHHGILKTGKISVGESLKAS 578 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D R + NHSATHL+H AL +LG+HV Q GS + D RFD H+ P+T E+ Sbjct: 579 VDIAARANIMRNHSATHLMHKALRQVLGTHVQQKGSLVDADKTRFDFLHNAPMTDEEIAK 638 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 +E VN I N P R M+ E A +GA L G KY D VRV+ + ++ LC Sbjct: 639 VEAIVNAEILANAPTQAREMDIESAQKTGAMMLFGEKYGDIVRVLDIGS------TTELC 692 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTHV+ TG+I L + +ES + AG+RRIEA TG A + Q + L++ LK Sbjct: 693 GGTHVNRTGDIGLFKVYAESGVAAGVRRIEAATGNGALKLINAQQALISQLSADLKAPTS 752 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKEL 809 + +V ++ + + L+ A+ K +L +IA V ++ + D+ L Sbjct: 753 ELASKVAQLSDHAKSLEKELARLKSKLASSQGDDLATQATEIAGVKVLAVTLEGADANTL 812 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 + MD L+ K++S I+L + + K S+ VT DL + A +L A+ +GG G G Sbjct: 813 RETMDKLKDKLKSAAIVLASV-NDGKVSLAAGVTSDLTGKIKAGELVNFVAQQVGGKG-G 870 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+P MA +GG + ++ +A+AGV+ ++ Sbjct: 871 GKPDMAMAGGTDASQLPKALAGVSDWV 897 >gi|212212531|ref|YP_002303467.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] gi|212010941|gb|ACJ18322.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] Length = 865 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 370/903 (40%), Positives = 544/903 (60%), Gaps = 48/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 61 VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGS 180 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG PGS+E +GERY+EIWNLVFMQ+ + K L K S+DTGMGLER+A V+Q Sbjct: 181 TISGGPPGSAEADGERYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLF++L++A + + + + RVIVDH+RS +FLIADG++P+NEGRGYV Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEMQFSN 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++ Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR +++ + + + G TQF+GY+ L Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + V +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L + D+ ++ + VD + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT++ L+ FNA +L A+ + GG GGRP +AQ G + A+A V + Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858 Query: 896 LKK 898 ++K Sbjct: 859 IEK 861 >gi|83590480|ref|YP_430489.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] gi|123524268|sp|Q2RHZ3|SYA_MOOTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83573394|gb|ABC19946.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] Length = 881 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 370/907 (40%), Positives = 532/907 (58%), Gaps = 43/907 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF GH ++ SSSL+P NDPTL+FTN+GMV FK+++ G ++ + Sbjct: 1 MTGNELRERFLKFFASKGHTIVHSSSLVPANDPTLLFTNAGMVQFKDVYLGLDRRPFTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK AI AW+ LT+ +L Sbjct: 61 TTAQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWEFLTRVLELP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY ED+EA++LW++I+G+ A++I+R+ DNFW+M +TGPCGPCSEI +D+G Sbjct: 121 PERLWVTVYQEDDEAYQLWQEIAGIPAERIVRMGEKDNFWAMGDTGPCGPCSEIIYDRGP 180 Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + + +R++EIWNLVFMQ+E+ + LP+ SIDTGMGLER+A+VLQ Sbjct: 181 EHACSSTPCALGACDCDRWLEIWNLVFMQYERDSNGNLSPLPRPSIDTGMGLERVASVLQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGR 297 +N+D DL LI+A E++TG Y+ RVI DH RS +FLIADGILP NEGR Sbjct: 241 GVDSNFDTDLIAPLIKAVEKITGRTYDPGEAGFPFRVIADHARSCTFLIADGILPGNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 YVLRRI+RRA + + LG EP + L+ + MG AYPE+ + + I + E+ R Sbjct: 301 SYVLRRILRRAARFGKALGIDEPFLYRLVDTVVAIMGGAYPEVAEQQEHIARVIEQEEIR 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL+ GL +L+G+L + E+++G AF LYDT+G PLD+ ++I G +D Sbjct: 361 FHETLNDGLKVLNGILERARQEGREVVSGLEAFTLYDTYGFPLDLTEEIAGEGGFK-VDR 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A+ QR RARA + + + E T F GYD L Sbjct: 420 DGFEKAMAAQRERARAAREDVKAYDFALAFAGALEDISGTAFTGYDQLED---------- 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V A+ Q+G V + VV D+TP Y E GGQ+GD G Sbjct: 470 -------------KGTVLALFQEGARVTSLEANATGYVVLDRTPCYPEGGGQVGDRGELK 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G + ++ D ++ +G VH V G L + + +D + R+ + NH+ THLLH Sbjct: 517 WSGGQARVEDTRRLPDGKIVHQINVTAGTLVVGQEVEIAVDRERRQATARNHTVTHLLHR 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG HV+Q GS +TP+ LRFD TH P+T EL+++E VN I NLPV T + Sbjct: 577 ALKNILGEHVNQAGSLVTPERLRFDFTHFAPLTGEELRAVEAEVNQKILANLPVTTLETS 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY +RVRVV + +S LCGGTH+ ST E +VSES Sbjct: 637 YQEAKAMGATALFGEKYGERVRVVKI-----DAYSMELCGGTHLGSTSEAGSFRLVSESG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RR+EA+TG A + ++L ++A LKV + RV + E+ ++ + A Sbjct: 692 IGAGVRRVEAVTGAAALEMALQDRQELATIAGLLKVPPDQAIQRVRHLLEQNKENERELA 751 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + +L + ++A V + + D + L+ + + L+ ++ SG+++L G Sbjct: 752 QLRNELASYTIDKLLDRVQEVAGVPVLPARVQITDPEALREMAERLRSRLGSGVVIL-GS 810 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + + +V++DL+ R +A +L R A+ + GGGGGR MAQ+GG + K DQA+ Sbjct: 811 QHNGRVNFVAMVSKDLVQRGIHAGNLLREVAR-IASGGGGGRADMAQAGGKDPGKLDQAL 869 Query: 890 AGVASFL 896 A + Sbjct: 870 AYSLKVV 876 >gi|285017964|ref|YP_003375675.1| alanyl-tRNA synthetase (alanine--tRNA ligase) protein [Xanthomonas albilineans GPE PC73] gi|283473182|emb|CBA15688.1| probable alanyl-trna synthetase (alanine--trna ligase) protein [Xanthomonas albilineans] Length = 883 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 386/909 (42%), Positives = 544/909 (59%), Gaps = 49/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FLEFF+ GH ++PS+ LIP NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLEFFKGKGHAIVPSAPLIPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDEAYGLWRDMVGVPEERIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGAHIAGGPPGSPEEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++T + RVI DH+R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTATTD--LENKSLRVIADHIRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + L+P L MG AYPEL+ A+ ++ L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQGFFSKLVPTLVALMGEAYPELVAAQDIVLRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + ++ G+ AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAAKAQ-GGVIAGEDAFRLYDTYGFPLDLTQDIARERALC-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+EEQR RAR G ++ L T F+GYD L+ Sbjct: 424 EQGFETAMEEQRRRAREAGKF---GGGVQLPADLVATLAPTLFLGYDSLQADGL------ 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++ G V+ A +G V ++ D+TPFYAE+GGQ+GD G Sbjct: 475 ----------------RVVALLKDGRPVQSAQAGDAVIILTDKTPFYAESGGQVGDIGIL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + G R +TD QK A H + G L+ L +D + RR +NHSATHLLH Sbjct: 519 LQGGTRCAVTDTQKFAGQFHGHVGTLIEGTLKIGDVLAGQVDAERRRATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI + EL IE VN + N V M Sbjct: 579 AALREVLGTHVHQKGSLVAPDRLRFDFSHFQPIAAKELALIERKVNQQVRANHAVEVHQM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + G +S+ LCGGTHV+ TG+I L + SE Sbjct: 639 GMQEALDFGAMALFGEKYGERVRVLKM-----GDYSTELCGGTHVTRTGDIGLFKVTSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A ++ ++ L A + S ++V ++ ++ ++Y++L+ Sbjct: 694 GVSAGVRRIEAVTGQGALDYVSAEEAMLHEAAELVGGSANDMVDKIRQLGDKYKRLEREM 753 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S + V ++ + D+K L+ MD L++++ +I+L G Sbjct: 754 EALKAKLASSATADLAGSAVDVGGVKVLAVRLEGFDAKALREAMDRLKQQLGESVIVLAG 813 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S E K +++ V + R A +L A + G GGGRP +AQ GG +G A+ Sbjct: 814 AS-EGKVALVSGVNGSPMGRVKAGELLSHIASQIS-GKGGGRPDLAQGGGEDGPALVHAL 871 Query: 890 AGVASFLKK 898 AGV ++K+ Sbjct: 872 AGVTEWVKQ 880 >gi|260557541|ref|ZP_05829756.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606] gi|260409167|gb|EEX02470.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606] Length = 883 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 392/913 (42%), Positives = 528/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 66 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD GE I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 186 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI RG Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + ++ + G TQF GY G Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 470 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+T ++ + R + NHSATH Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 632 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E L Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + VD+K L+++ D+++ K+++ +I Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S++ V A D+ + A L GG GGG+P +AQ G P K Sbjct: 812 VLAGVEGD-KVSLIASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869 Query: 886 DQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 870 GQVMAALPAWLEQ 882 >gi|294860514|ref|ZP_06798283.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013150] Length = 883 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 529/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 66 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD GE I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 186 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI RG Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + ++ + G TQF GY G Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 470 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+T ++ + R + NHSATH Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I +N V T Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAKIIENTAVTT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 632 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E L Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + VD+K L+++ D+++ K+++ +I Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869 Query: 886 DQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 870 GQVMAALPAWLEQ 882 >gi|184157474|ref|YP_001845813.1| alanyl-tRNA synthetase [Acinetobacter baumannii ACICU] gi|213156272|ref|YP_002318692.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057] gi|215484078|ref|YP_002326303.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294] gi|294840176|ref|ZP_06784859.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013113] gi|294842075|ref|ZP_06786758.1| alanyl-tRNA synthetase [Acinetobacter sp. 6014059] gi|301346311|ref|ZP_07227052.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB056] gi|301510214|ref|ZP_07235451.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB058] gi|301596473|ref|ZP_07241481.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB059] gi|183209068|gb|ACC56466.1| Alanyl-tRNA synthetase [Acinetobacter baumannii ACICU] gi|213055432|gb|ACJ40334.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057] gi|213985935|gb|ACJ56234.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294] gi|322507789|gb|ADX03243.1| alaS [Acinetobacter baumannii 1656-2] gi|323517389|gb|ADX91770.1| alanyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715] Length = 883 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 66 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD GE I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 186 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI RG Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + ++ + G TQF GY G Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 470 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+T ++ + R + NHSATH Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 632 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E L Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + VD+K L+++ D+++ K+++ +I Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869 Query: 886 DQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 870 GQVMAALPAWLEQ 882 >gi|330720929|gb|EGG99105.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC2047] Length = 865 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 399/903 (44%), Positives = 550/903 (60%), Gaps = 46/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL+F + GHE L SSSL+P NDPTL+FTN+GMV FK +F G E Y Sbjct: 1 MKSSDIRNAFLDFLVQQGHERLASSSLVPGNDPTLLFTNAGMVQFKELFLGNETRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L Sbjct: 61 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKVEAIKFAWTFLTEVMGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++TVY+ED+EA +W K G+SA++ R+ DNFWSM +TGPCGPC+EIF+D GE Sbjct: 121 EEKLWVTVYEEDDEAADIWLKDMGVSAERFSRLGKKDNFWSMGDTGPCGPCTEIFYDHGE 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG P E+G+RYIEIWNLVFMQFE+ LPK S+DTGMGLER+A V+Q Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFERAADGTMTPLPKPSVDTGMGLERIAAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NNY+IDLF+ L++ + +V G+ + + RVI DH+RS SFL++DG++P+N+GRGYV Sbjct: 241 HNNYEIDLFQTLLKRAAEVVGVSD--TSNTSLRVIADHIRSCSFLVSDGVIPSNDGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + ++ AL EMG AYPEL+ + IE+ L E+E+F K Sbjct: 299 LRRIIRRAIRHGHKLGMKDAFFHKIVSALVDEMGEAYPELVTRQAQIEQVLAKEEEQFAK 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD+G+ + + LS L +EI G+ F+LYDT+G P+D+ DI R L +DI F Q Sbjct: 359 TLDQGMQIFERDLSELKGNEI-PGETIFRLYDTYGFPVDLTADIARERNLI-MDIAGFEQ 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A++EQR RARA S + ++ G T F GYDLL Sbjct: 417 AMQEQRERARAASSFDVDMRADVVF------EGETDFCGYDLL----------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + A+V++G+ E + G VV D TPFYAE+GGQ+GD G D Sbjct: 454 ------TEQCQISALVKEGDTAESLIEGDTGVVVLDHTPFYAESGGQVGDVGTLQTDEAV 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++T+ K+A +H +VERG LV +D + R+ ++NHSA+HLLH AL + Sbjct: 508 FRVTNTVKQAGT-HLHQGVVERGSFTVGTKLVAEVDTRKRQATALNHSASHLLHAALRDV 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS ++P+ LRFD +H + +T+ +L +IE VND I N V T +M EDA+ Sbjct: 567 LGEHVAQKGSLVSPERLRFDFSHFEAVTAQQLSAIEAMVNDKIQANSEVGTELMALEDAM 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SG AL G KY+D VRV+S+ S LCGGTHV+ TG+I + I+SES + AG+ Sbjct: 627 NSGVTALFGEKYSDEVRVLSM----ADGFSVELCGGTHVNRTGDIAVFKIISESGVAAGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A ++ ++ L +A LK + V +V+ + + R+L+ A K + Sbjct: 683 RRIEAVTGNAALTYYQNLEQDLTEIAGVLKSAPEQTVEKVQLLASKNRQLEKELAALKAK 742 Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L ++ V ++H VD K L S MD L+ K+ + +I+L +K K Sbjct: 743 LVTSSGRDLASEAVELNGVKVLAHAFEGVDGKTLLSTMDQLKSKLGTAVIVLA-TAKGDK 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+D DR A +L + A +GG G GGRP MAQ+GG A+A V + Sbjct: 802 VSLVAGVTKDATDRVKAGELVNMVAGQVGGKG-GGRPDMAQAGGNQPEAIPAALASVVPW 860 Query: 896 LKK 898 L++ Sbjct: 861 LEQ 863 >gi|169796616|ref|YP_001714409.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE] gi|205829964|sp|B0VAI3|SYA_ACIBY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830054|sp|A3M3W2|SYA_ACIBT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830056|sp|B2HWK7|SYA_ACIBC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169149543|emb|CAM87432.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE] gi|193076886|gb|ABO11606.2| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978] Length = 878 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 61 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD GE I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI RG Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + ++ + G TQF GY G Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+T ++ + R + NHSATH Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E L Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 746 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + VD+K L+++ D+++ K+++ +I Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864 Query: 886 DQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 865 GQVMAALPAWLEQ 877 >gi|54294686|ref|YP_127101.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens] gi|59798486|sp|Q5WVQ2|SYA_LEGPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|53754518|emb|CAH16002.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens] Length = 860 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 377/904 (41%), Positives = 541/904 (59%), Gaps = 52/904 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL +F + GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MKSSEIRQAFLNYFVQRGHQLVASSSLIPSNDPTLLFTNAGMVQFKDLFLGLETRPYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ + Sbjct: 61 VTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY ED EA +W K +S ++ R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 AERLWVTVYKEDLEAEGIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG P E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A V+Q Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGCLHPLPKPSVDTGMGLERLAAVIQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID F++LI+A Q+ N + +VI DH+RS SFLI DG+LP+NEGRGYV Sbjct: 241 HSNYEIDSFQYLIKAIAQLGQ--DIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG P L+ L MG AYPELI +K IE L+ E+ +F + Sbjct: 299 LRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFTR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL LL + +L E L+G+VAFKLYDT+G P+D+ DI+ +GL ID+ +FNQ Sbjct: 359 TLEQGLRLLQDHIKNLKGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFNQ 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +++QR +++A S + ++ + ++F GY+ Sbjct: 417 LMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------- 451 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + + ++Q+G V+ G K V+ D TPFYAE+GGQ+GD G IG Sbjct: 452 ----KESMEAKIIGLLQEGNEVKSLNKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEFS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 Q+ D QK + + + V +G L ++S+ +D+ R + +NH+ATHLLH AL I Sbjct: 508 FQVDDTQKVGQAVVHY-GEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKQI 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 +G HV Q GS + + RFD +H +P+T +++ IE+ VN I N V+T++M+ E A Sbjct: 567 VGQHVQQRGSLVDAERARFDFSHFEPLTPQQIQQIEEVVNAQIRANNEVITQVMDIESAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL G KY+D VRV+S+ G S LCGGTH TG+I L IV+E I +GI Sbjct: 627 QSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASGI 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777 RR+E +TG+ A + + Q + +LA+ LK + ++ +V ++ + + + + AK Sbjct: 682 RRVEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLSE 741 Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 K Q + D+ +I +N + + +DS+ ++ MD L+ +I S +I+L I + K Sbjct: 742 KAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTIEQN-K 800 Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +V+ V+++++ + NA L R G GGGR MAQ GG + I + Sbjct: 801 MNVIAGVSKNIIGKTPNAAQLVRHLC-----GKGGGRDDMAQGGGDVPEDLNSKIKEIKE 855 Query: 895 FLKK 898 ++K Sbjct: 856 MIEK 859 >gi|83647875|ref|YP_436310.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396] gi|123531367|sp|Q2SBT9|SYA_HAHCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83635918|gb|ABC31885.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396] Length = 876 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 378/911 (41%), Positives = 529/911 (58%), Gaps = 54/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ FL++FQ+NGHE++ SSSL+P +DPTL+FTN+GM FK++F G++K Y Sbjct: 1 MKSSEIRSAFLKYFQRNGHEVVASSSLVPADDPTLLFTNAGMNQFKDVFLGKDKRNYDRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWEFLTSSDWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 +D+ +L +TVY D+E+F +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 121 IDKSKLTVTVYASDDESFDIWANEIGVPEERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG P E+G+R+IEIWN+VFMQF + E LPK S+DTGMGLE Sbjct: 181 TEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNVVFMQFNRTADGEMHPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ ++Q +NY+IDLF+ L+ + +V G RVI DH+RSSSFLIADG+L Sbjct: 241 RISALMQGVHSNYEIDLFQELLAEASKVLGGA--SIEEPALRVIADHIRSSSFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N GRG VLRRI+RRA Y +G TEP + L+ L MG AYPEL ++ IE+TL Sbjct: 299 PENIGRGSVLRRIIRRAARYGNKVGATEPFLHKLVGKLVELMGDAYPELKASQNKIEKTL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTLD+GL LL+ L L + G F LYDT+G P+++ DI R L Sbjct: 359 LLEEEQFAKTLDKGLKLLEHELEQLK-GMTIPGKTIFTLYDTYGFPVELTNDIARERSL- 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D+ + +E QR RAR G+ + + +++F GY L GS Sbjct: 417 AMDMDGYEVEMEAQRKRAREA------GSFGVDYNAGLNIDVSSEFTGYTELAGSYKA-- 468 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 A+ + + GQ+ VV D+TPFYAE+GGQ+GDT Sbjct: 469 ---------------------LALFAGSDKADALTVGQQGLVVLDKTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D + D +K+ VH V G ++ ++ +D R+ ++NHSATH Sbjct: 508 GVLKTDTGVFVVKDTKKEGA-AIVHIGAVSEGEIKVGQTVTAEVDRHKRKATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + P+ LRFD H +P+T +++ +E VN I N V T Sbjct: 567 LLHAALRKVLGDHVAQKGSLVDPERLRFDFAHFEPMTQEQIRQVESIVNAQIRANTSVST 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY D VRV+++ D S LCGGTHV TG+I + I Sbjct: 627 EVMGMDAARERGAMALFGEKYGDTVRVLAMGESD---FSIELCGGTHVERTGDIGMFVIA 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ AG+RRIEA+TGQ A + + D L+ +A +K ++ +V + E R+L+ Sbjct: 684 SEAGTAAGVRRIEALTGQPAENWVQSSDALLRDIAVLVKGNRETAADKVRALIERSRQLE 743 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L S + + ++ + VD K L +D L+ K+ +++ Sbjct: 744 KEVDQVKAKLASSAGSDLAASAVDVKGLKVLAAKLDGVDRKALMDTVDQLKNKLGQAVVL 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + ++ KAS++ VT+ + A DL ++ A+ L GG GGGRP MAQ GG K D Sbjct: 804 LASV-EDGKASIVAGVTKAESAKVKAGDLVKMVAEQL-GGKGGGRPDMAQGGGVELGKLD 861 Query: 887 QAIAGVASFLK 897 A+A V ++++ Sbjct: 862 AALASVNAWVE 872 >gi|221639882|ref|YP_002526144.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131] gi|221160663|gb|ACM01643.1| Alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131] Length = 883 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 433/874 (49%), Positives = 568/874 (64%), Gaps = 37/874 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA ++WKK++GL ++IIRI TNDNFW M TGPCGPC+EIFFD G Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGTQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ L HL L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLERGLRLLEDELGHLPDGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E +GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G A GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV KK +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRAAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HS+ ++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ DG +S LCGGTHVS G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGADGQTYSLELCGGTHVSRLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG+ A ++L Q ++L +A+ LK + +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755 Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ + + + +I V F++ ++ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 KA++ VT DL DR +AV L + +A+ L Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848 >gi|116623844|ref|YP_826000.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076] gi|122253309|sp|Q01XA0|SYA_SOLUE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116227006|gb|ABJ85715.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076] Length = 878 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 358/908 (39%), Positives = 517/908 (56%), Gaps = 45/908 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF + GH ++ SSSL+P NDPTL+FTN+GM FK++F GQEK Y Sbjct: 1 MTGHEIRQRFLDFFAERGHRVVRSSSLVPANDPTLLFTNAGMNQFKDVFLGQEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AWDL+TK++ L Sbjct: 61 ASSQKCVRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKADAIAYAWDLITKDYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 + +LY+TV+ ED+EA +LW+K++G+ +I R+ DNFW M ETGPCGPCSEI +D G Sbjct: 121 KEKLYVTVFREDDEAEELWQKVTGIPKSRIFRLDEKDNFWQMGETGPCGPCSEIHYDLGI 180 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E + G R++EIWNLVFMQ+++ + LP+ SIDTGMGLER+A +L Sbjct: 181 EAAEPGREHEQFPDDAGGRFVEIWNLVFMQYDRDQSGKLNPLPRPSIDTGMGLERIAAIL 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K NYD DL +I+ + ++ G+ + R++ DH R++ FLI DG++P+NE Sbjct: 241 QGKITNYDTDLIYPIIEHAAEIFGVTPGADTRTDTVLRIVADHARATEFLIHDGVVPSNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLR+IMRRA+ R++G +P + L + M YPEL+++ + + E+ Sbjct: 301 GRGYVLRKIMRRALRNVRMIGIEDPFLYKLTGFVGELMKGPYPELLESIQRVARVTKDEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 R+ T + + + + + G ++FKLYDT+GL LD +D+ GL ID Sbjct: 361 HRYATTFLVAERVFNDAIKSIQ-GNTIPGALSFKLYDTYGLALDEQEDMAREHGL-AIDR 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 SF+ +E+QR RARA G + L E+ G T+F+GY L Sbjct: 419 ESFDTEMEQQRERARASWKGAEKAAVTPAYQKLVEQ-GRTKFLGYSELE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +S V ++ E V++ +G K E+V DQTPFYAE+GGQ+GD G Sbjct: 467 ------------AASRVVGLIVDKESVQQVPAGAKAELVLDQTPFYAESGGQVGDHGILY 514 Query: 536 GDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + H I + +L + R NH+ATHLLH Sbjct: 515 SAAGEKVADVETAFPGVPGLTVHRIAALAPIAVGDTLRAEVAVPLRDATRRNHTATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 +L T+LG HV Q GS + P LRFD TH + AEL+ +E +N I +N V T I+ Sbjct: 575 ASLRTVLGKHVKQAGSIVDPGRLRFDFTHYAGLDHAELEEVERLMNQEILRNTAVQTDIL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E AIA+GA AL G KY D+VRVVSV S LCGGTHV TG+I + IV E Sbjct: 635 PLEQAIATGAMALFGEKYGDQVRVVSVPG-----FSRELCGGTHVQRTGDIGVAKIVYEG 689 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI AG+RRIEAITG+ A +K +A +KVS+ ++ +E++ R L+ Sbjct: 690 SISAGVRRIEAITGEAALRQYQETSGAVKRVADMVKVSEPALIEHIEKMIANERALEKQV 749 Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K +L D I V ++ + +D +++++ D+L+ K +S +++L Sbjct: 750 EQLKNKLAQAAVGSLDAEARTIKGVKVVAAHLDGMDRAQMRALADSLRNKWKSAVVVLAS 809 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + ++ +++ VT+DL + +A LA A+ + GG GGGRP MA++GG + + D+A+ Sbjct: 810 V-EDGNVAIISAVTKDLTAKVHAGKLASSLAQAV-GGKGGGRPDMAEAGGKDPSCLDEAL 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 TAVYADVE 875 >gi|205830103|sp|Q0BSD5|SYA_GRABC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 880 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 442/887 (49%), Positives = 586/887 (66%), Gaps = 32/887 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+ Y Sbjct: 1 MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+++T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 +L +TVY +D++A +LWK I+GL ++IIRI ++DNFW M +TGPCGPCSEIF+D Sbjct: 121 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+E+ R LP+ SIDTGMGLER+A VLQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS + TG +G + +HRV+ DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L+PAL +MG+AY EL+QA+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL +L + LG+ + L+GDVAFKLYDT+G PLD+ QD L +G +D+ F+ Sbjct: 361 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGR-AVDVAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR RARA G G E +WF ++++ G T+F+GY Sbjct: 420 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + + A+V G + E A +G +V VV +QTPFY E+GGQ+GDTG G Sbjct: 461 ----STEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R+ I+D QKK +FVH VE G+ + + + +D+Q R + +HSATHLLH AL Sbjct: 517 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS PD LRFDV+ PIT +L +E VN +I QN PV TR+M E Sbjct: 577 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715 A+A GA AL G KY D VRVVS+ +S LCGGTHV TG+I L I ES+ Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH- 774 + AG+RRIEA+TG+ A + + + +L+ AS L+V+ G+V RV + EE +KL+ Sbjct: 697 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 756 Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A+RKL ++ V + + +V KELK + +A+ ++++SG++ LV + E Sbjct: 757 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVSTA-E 815 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 KASV++ VT DL RF+AV L R ++ +GG GGGGRP MAQ+GGP Sbjct: 816 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 862 >gi|126667522|ref|ZP_01738492.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17] gi|126627948|gb|EAZ98575.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17] Length = 876 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 380/912 (41%), Positives = 542/912 (59%), Gaps = 54/912 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FLE+F + GH ++PSSSL+P +DPTL+FTN+GM FK++F G+E+ Y Sbjct: 1 MKTAELRQAFLEYFNQQGHAIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREQRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + + Sbjct: 61 TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWNFLTSEQWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L+ITVY ED+EAF +W + G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 LPKTKLWITVYAEDDEAFDIWNQEIGVPAERIVRIGDNAGGRYSSDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G + GG P E+G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLE Sbjct: 181 SEIFFDHGPDVAGGPPGSPDEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NY+IDLF+ L++A+ V G + RV+ DH+RS FLI DG++ Sbjct: 241 RVTAVLQGVHSNYEIDLFQDLLKAASDVLGG--VATTEASLRVVADHIRSCCFLIGDGVM 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRG+VLRRI+RRA + LG P L+ AL MG A+P+L+ + IE+ L Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGANGPFFYKLVGALVELMGEAFPQLVSSHKQIEKVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTLD GL LL+ ++ L +++ G+ F LYDT+G P+D+ DI RGL Sbjct: 359 LQEEEQFVKTLDNGLRLLEQDIAELK-GDVIPGETVFALYDTYGFPVDLTNDIARERGLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + +A+E QR RARA S E + G T+F GY + G + ++ Sbjct: 418 -LDYQGYEKAMEAQRERARAASKFGIDYNAESLKLE-----GVTEFSGYQNIDGHERIRS 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 G + A +G + +V ++TPFYAE+GGQ+GDT Sbjct: 472 VIV------------------------GSEHKNAEAGDEAIIVLERTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G R Q+TD +K+ +H V G L + + ID++ R + NHSATH Sbjct: 508 GLLTWSGGRFQVTDTRKEGNN-HLHIGTVVEGELFPGLEVDARIDHERRERTKRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HVSQ GS + PD LRFD +H + +++A+L+ IE VN I +N V T Sbjct: 567 LLHAALRKVLGEHVSQKGSLVDPDKLRFDFSHLEAVSAADLQEIERQVNQQILENTSVAT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ +S LCGGTHV+ TG+I L+ I Sbjct: 627 EVTDMEQAQAKGALALFGEKYGDSVRVLSMGS---DGYSVELCGGTHVNRTGDIGLMRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEA+TG A + + L+ A +K S+ ++V +V++ + R+L+ Sbjct: 684 SESGIASGVRRIEAVTGFGALEWVGSAERTLREAARLVKGSRESLVEKVQQTLDRNRQLE 743 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L S ++A + ++ + D + L D L+ K+ G+++ Sbjct: 744 KEIDGLKAKLASSAGSDLASSAVEVAGLRVVAAEMPGADRQALMETADQLKNKLGEGVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + ++ K +++ VT+ R A D+ + L G GGGRP MAQ GG + ++ Sbjct: 804 LASV-EDGKVTLVSGVTKSATGRVKAGDIMKHLCAQL-DGKGGGRPDMAQGGGNDASRLT 861 Query: 887 QAIAGVASFLKK 898 + +AGVA +++K Sbjct: 862 EVLAGVAGWVEK 873 >gi|259418847|ref|ZP_05742764.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B] gi|259345069|gb|EEW56923.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B] Length = 903 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 431/896 (48%), Positives = 575/896 (64%), Gaps = 39/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++ Y Sbjct: 20 MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T EFD+ Sbjct: 80 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK G+ D+IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK+LI+AS VT G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 259 THDNYETDLFKYLIEASATVTNSDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG T+P+M L+PAL ++MG+AYPEL Q + LIEET E+ RF Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L + ++L G+ AFKLYDT G PLD+ QD L A+G +D F+ Sbjct: 379 KTLDRGLKLLDEASVDLNQGDVLPGETAFKLYDTFGFPLDLTQDALRAKG-VEVDTDGFD 437 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG K++F + + G T+F+GY+ Sbjct: 438 AAMKAQKEQSRAGGIGLGDAADVKVYFDIVDAEGTTEFLGYE------------------ 479 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G VE A G V+++ +QTPFY E+GGQ+GDTG +G Sbjct: 480 -----TEKAEGQIVALVKDGAKVETAKKGDSVQIILNQTPFYGESGGQVGDTGVLTVEGG 534 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +I+D KK EG+F+H A V G + + +D+ R Q+ NHSATHLLH AL Sbjct: 535 AARISDT-KKVEGLFLHIAEVTEGEISVGSGAAMEVDHTRRSQIRANHSATHLLHEALRN 593 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS + LRFD +H+K ++ +L I VND I QN PV TRIM +DA Sbjct: 594 ALGEHVAQKGSLNAAERLRFDFSHNKAVSQEDLTKIASEVNDFIRQNSPVSTRIMTPDDA 653 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY + VRVVS+ DG +S LCGGTHV TG+I I+ + Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRADTGKGADGDTYSIELCGGTHVKQTGDIGTFVILGD 713 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A HL + ++ +A LK +V+ R++ + +E + L Sbjct: 714 SASSAGVRRIEALTGAAAFDHLEREAARMAEVAGALKAQSADVMDRLKALMDERKALHNE 773 Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K Q+ + +I+ F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 774 ISNLKQQIAMGGGSDGGAETKEISGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + Sbjct: 834 A-EDDGKVAVAAGVTDDLTGDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSG 888 >gi|163736400|ref|ZP_02143819.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107] gi|161390270|gb|EDQ14620.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107] Length = 883 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 438/893 (49%), Positives = 574/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWDLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT + G+ V+HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL +A+ +IEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD LS L + L G AFKLYDT G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELSGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + ++ G T F+GY+ Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G V EA G V+VV +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEAAEGQIMALVVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD KKA G+F+H VE G++ + L +D+ R + NHSATHLLH AL Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K ++ EL+ + +VN I QN V TRIM +DA Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSGEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ +DG +S LCGGTHV TG+I I+S+ Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEVANSLKAQPEEVMDRLKALMDERKALQNE 754 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K Q+ + ++ F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|330811260|ref|YP_004355722.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379368|gb|AEA70718.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 873 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 384/912 (42%), Positives = 535/912 (58%), Gaps = 56/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS Q G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RISAVLQHVHSNYEIDLFQSLLSASAQAIGCT--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLKILEQDLAELK-GNVVPGDVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + AT+F GY Sbjct: 418 -LDEEGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATEFTGY----------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ + AI + G+ V+ GQ+ +V D+TPFYAE+GGQ+GD+ Sbjct: 460 ------------AGTTGSAKIVAIYKDGQSVDILSEGQEGVIVLDKTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH ++ G L + +D R S+NHSATH Sbjct: 508 GYLQAGSSRFDVRDTTKTGG-AFLHHGVLASGSLMIAAPVAAHVDADVRHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +LK++E+ VN I +N PV T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEEIVNAEIRKNSPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E A GA AL G KY D VRV+S+ G S LCGG H + TG+I L+ I+ Sbjct: 627 EETDIETAKRKGAMALFGEKYGDSVRVLSM-----GDFSVELCGGIHANRTGDIGLMKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E+LK A+ +K S+ N++ ++ + E R L+ Sbjct: 682 SEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLIKGSRDNLIDKLSAVLERNRLLE 741 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 742 KQLEQLQAKAASAAGDDLSAQAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVIL 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + +E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 802 LGSVHEE-KVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGTDVGALD 859 Query: 887 QAIAGVASFLKK 898 A+A +F+++ Sbjct: 860 AALAQTVAFVEQ 871 >gi|114328034|ref|YP_745190.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1] gi|114316208|gb|ABI62268.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1] Length = 945 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 442/887 (49%), Positives = 586/887 (66%), Gaps = 32/887 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+ Y Sbjct: 66 MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 125 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+++T+EF L Sbjct: 126 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 185 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 +L +TVY +D++A +LWK I+GL ++IIRI ++DNFW M +TGPCGPCSEIF+D Sbjct: 186 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 245 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+E+ R LP+ SIDTGMGLER+A VLQ Sbjct: 246 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 305 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS + TG +G + +HRV+ DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 306 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 365 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L+PAL +MG+AY EL+QA+ LI ETLR E+ RF Sbjct: 366 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 425 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL +L + LG+ + L+GDVAFKLYDT+G PLD+ QD L +G +D+ F+ Sbjct: 426 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGR-AVDVAGFD 484 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR RARA G G E +WF ++++ G T+F+GY Sbjct: 485 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGY------------------- 525 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + + A+V G + E A +G +V VV +QTPFY E+GGQ+GDTG G Sbjct: 526 ----STEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 581 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R+ I+D QKK +FVH VE G+ + + + +D+Q R + +HSATHLLH AL Sbjct: 582 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 641 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS PD LRFDV+ PIT +L +E VN +I QN PV TR+M E Sbjct: 642 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 701 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715 A+A GA AL G KY D VRVVS+ +S LCGGTHV TG+I L I ES+ Sbjct: 702 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 761 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH- 774 + AG+RRIEA+TG+ A + + + +L+ AS L+V+ G+V RV + EE +KL+ Sbjct: 762 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 821 Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A+RKL ++ V + + +V KELK + +A+ ++++SG++ LV + E Sbjct: 822 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVSTA-E 880 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 KASV++ VT DL RF+AV L R ++ +GG GGGGRP MAQ+GGP Sbjct: 881 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 927 >gi|52842026|ref|YP_095825.1| alanyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359345|ref|YP_001250552.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby] gi|296107392|ref|YP_003619092.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy] gi|59798497|sp|Q5ZUJ9|SYA_LEGPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830130|sp|A5ICV6|SYA_LEGPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52629137|gb|AAU27878.1| alanyl tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281118|gb|ABQ55206.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby] gi|295649293|gb|ADG25140.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy] gi|307610501|emb|CBX00082.1| alanyl-tRNA synthetase [Legionella pneumophila 130b] Length = 860 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 373/904 (41%), Positives = 538/904 (59%), Gaps = 52/904 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MKSSEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ + Sbjct: 61 ATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY ED EA +W K +S ++ R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 AERLWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG P E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A V+Q Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHPLPKPSVDTGMGLERLAAVIQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID F++LI+A Q+ N + +VI DH+RS SFLI DG+LP+NEGRGYV Sbjct: 241 HSNYEIDSFQYLIKAIAQLGQ--DIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG P L+ L MG AYPELI +K IE L+ E+ +F + Sbjct: 299 LRRIIRRAVRHGNKLGLPSPFFSKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFTR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL LL + +L E L+G+VAFKLYDT+G P+D+ DI+ +GL ID+ +FNQ Sbjct: 359 TLEQGLRLLQDHIKNLQGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFNQ 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +++QR +++A S + ++ + ++F GY+ Sbjct: 417 LMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------- 451 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + + ++Q+G V+ G K V+ D TPFYAE+GGQ+GD G IG Sbjct: 452 ----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEFT 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 Q+ D QK + + + V +G L ++ + +D R + +NH+ATHLLH AL I Sbjct: 508 FQVDDTQKVGQAVVHY-GKVIKGELTLDLLIHAQVDNIRRDAIRLNHTATHLLHAALKKI 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 +G HV Q GS + + RFD +H + +T +++ IE+ VN I N V+T++M+ E A Sbjct: 567 VGQHVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIESAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL G KY+D VRV+S+ G S LCGGTH TG+I L IV+E I +GI Sbjct: 627 QSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASGI 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777 RRIE +TG+ A + + Q + +LA+ LK + ++ +V ++ + + + + AK Sbjct: 682 RRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLSE 741 Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 K Q + D+ +I +N + + +DS+ ++ MD L+ +I S +I+L I + K Sbjct: 742 KAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTIEQN-K 800 Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +V+ V+++++ + +A L R G GGGR MAQ GG + I + Sbjct: 801 MNVIAGVSKNIIGKAPSAAQLVRHLC-----GKGGGRDDMAQGGGGVPEDLNSKIKEIKE 855 Query: 895 FLKK 898 ++K Sbjct: 856 MIEK 859 >gi|325121489|gb|ADY81012.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2] Length = 883 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 392/913 (42%), Positives = 526/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 66 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 186 SEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ +G + RV+ DH RS FLIADG+ Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDQG--QPSLRVVADHARSCCFLIADGVN 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATL 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI R Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + ++ + G TQF GY Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY----------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+ + ++ + R + NHSATH Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E L Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALDVVQKTDADIQHINSLLKAQKDQTVERVQANVELVSAL 751 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L S IA + + VD+K L+++ D+++ K+++ +I Sbjct: 752 QKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 812 VLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869 Query: 886 DQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 870 GQVIAALPAWLEQ 882 >gi|78047331|ref|YP_363506.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585336|sp|Q3BUQ7|SYA_XANC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78035761|emb|CAJ23452.1| Alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 882 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 387/909 (42%), Positives = 533/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ + +TD QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +P T+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPFTADELAVIERKVNAEVRANHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S + V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|325927198|ref|ZP_08188459.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118] gi|325542426|gb|EGD13907.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118] Length = 882 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 388/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ + +TD QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRANHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLEREL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L S + V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|239503494|ref|ZP_04662804.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB900] Length = 878 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 527/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 61 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD GE I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI RG Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + ++ + G TQF GY G Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+T ++ + R + NHSATH Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV E L Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVHANVELVSAL 746 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + VD+K L+++ D+++ K+++ +I Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864 Query: 886 DQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 865 GQVMAALPAWLEQ 877 >gi|169633133|ref|YP_001706869.1| alanyl-tRNA synthetase [Acinetobacter baumannii SDF] gi|169151925|emb|CAP00779.1| alanyl-tRNA synthetase [Acinetobacter baumannii] Length = 878 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 61 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD GE I GGLPGS E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI RG Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RA +G + ++ + G TQF GY G Sbjct: 418 -IDEAGFEVEMAAQRQRA------HDAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+T ++ + R + NHSATH Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATAHNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS +T D LRFD + +P++ +L+ +E VN I N V T Sbjct: 567 LLHAALRQILGSHVQQKGSLVTSDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E L Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQYINSLLKAQKDQTVERVQANVELVSAL 746 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L + IA + + VD+K L+++ D+++ K+++ +I Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864 Query: 886 DQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 865 GQVMAALPAWLEQ 877 >gi|254805364|ref|YP_003083585.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14] gi|254668906|emb|CBA07085.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14] Length = 885 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 370/911 (40%), Positives = 524/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR+RARA + L T+F GY Sbjct: 428 ELDEAGFEREMEAQRTRARAAQSFKANA-------QLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G + +V D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDEGAIVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 870 PAVLDSVKDWV 880 >gi|93006462|ref|YP_580899.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5] gi|122415158|sp|Q1QA88|SYA_PSYCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|92394140|gb|ABE75415.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5] Length = 890 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 362/913 (39%), Positives = 523/913 (57%), Gaps = 54/913 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR F++FF H + SSSLIP NDPTL+FTN+GM FK F G E Y T Sbjct: 7 SADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVT 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I W+ LT + +D Sbjct: 67 SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAID 126 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RLY+T+Y+ D+EAF +W K G+ +++IIRI N DNFW+M +TGPCGPC+E Sbjct: 127 KNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 186 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +F+D G I GGLP E+G+RYIEIWN VFMQF +Q LP S+DTGMGLER+ Sbjct: 187 VFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTGMGLERI 246 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q NY+IDLF HL+ A+ ++ ++ + +VI DH+R+ SFLIADG+ P+ Sbjct: 247 SAIMQGVHGNYEIDLFVHLMDAAAEILEIE--NQQQSSLKVIADHIRAVSFLIADGVTPS 304 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++ L EMG+AYPEL + +IE ++ Sbjct: 305 NEGRGYVLRRIIRRAVRHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQK 364 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ +F KTL +GL LL L L + L+G+ AFKLYDT+G P+D+ DI RG I Sbjct: 365 EETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKLYDTYGFPVDLTADITRERG-IVI 423 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F++ ++ QR RAR +G + + S+ + T FIGY+ L Sbjct: 424 DEAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLEEEGV----- 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + A+ Q G + G + +V D+TPFYAE GGQ+G+ G Sbjct: 473 -----------------TIDALYQDGNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGE 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ D +K + I + +V G + T+ + + R + NHSATHLL Sbjct: 516 IRTASGVFEVQDTKKSGQAIIHY-GVVTMGDISTKQTADAQVLSSIRAASAKNHSATHLL 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG V+Q GS ++ + LRFD ++ KP+++AE+ IE VN+ I N P Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIEN 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLL 708 M+ ++A+ GA AL G KY VRV+++ S LCGG HV TG+I +L Sbjct: 635 MSIDEAMKQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVL 694 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AGIRRIEA+TG A ++ +++L LAS LKV + V RV + ++ R Sbjct: 695 KITSESGIAAGIRRIEAVTGMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L+ + + ++ + IA + +S +D K ++++MD ++ K+ Sbjct: 755 ELEKQLERLEQKIASAQAANLLDDVQTIAGTPVLISTLSGIDGKSIRTLMDDIKSKLPDS 814 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L+G K+++ ++ V + + + A D+ R A L GG GGG+P AQ G P Sbjct: 815 VIVLIG-DKDEQLALAASVAKSVTAKVKAGDIIRHLASEL-GGKGGGKPDYAQGGAPKAA 872 Query: 884 KADQAIAGVASFL 896 + + + +++ Sbjct: 873 NTNAVVNALPAWI 885 >gi|294339360|emb|CAZ87716.1| alanyl-tRNA synthetase [Thiomonas sp. 3As] Length = 917 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 376/953 (39%), Positives = 531/953 (55%), Gaps = 96/953 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 NVS IR FL +F+ G + SSSL+P NDPTL+FTNSGMV FK++F GQ++ Y+ Sbjct: 1 MNVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 61 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSE Sbjct: 121 AEKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQE------------------ 215 IF+D G I GG PGS E+G+RYIEIWNLVFMQFE+ E Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFDTEDQATARKQAVEA 240 Query: 216 --------------------RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 + LPK +DTGMGLER+A VLQ +NY+IDLF+ LI+A Sbjct: 241 EGGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKA 300 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 + + T G+ + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ + L Sbjct: 301 AARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKL 358 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G +P ++P L +MG+AYPEL + + + E L++E+ RF +T++ G+ +LD L+ Sbjct: 359 GVRQPFFYKMVPDLVAQMGAAYPELAEVQGRVAEVLQAEEARFFETIEHGMGVLDTELAA 418 Query: 376 LGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433 L +L G++AFKL+DT G PLD+ QD+ G+ +D +F+ A+ QR +ARA Sbjct: 419 LRAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDAAMARQREQARAAG 477 Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493 + + T+F GY+ L + V Sbjct: 478 KFKMQAALDYV-------GDKTRFDGYEHLLVK----------------------EARVV 508 Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKA 550 A+ + G V +G VV D+TPFYAE+GGQ+GD+G +R + D QK Sbjct: 509 ALYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCELRFVVHDTQKLQ 568 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610 +F HH +E G L+ + +D + R+ + NHS THL+H AL +LG HV Q GS Sbjct: 569 ADVFGHHGTLESGSLKVGEIVAAQVDGERRQAVMRNHSVTHLMHKALRLVLGDHVQQKGS 628 Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670 + D RFD H P++ E+ +E VN+ I N R+M ++A GA L G Sbjct: 629 LVDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGLGAMMLFGE 688 Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 KY D VRV+ + S LCGGTHV+ TG+I L IV E + AGIRR+EAITG Sbjct: 689 KYGDTVRVLDIG------TSRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAITGLN 742 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786 A + + Q+ + L+ LK +VE++ E+ R+L+ A+ K Q Sbjct: 743 ALAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLAQLKAQQAAAQGDALV 802 Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 I + + + +D+K L+ +D ++ K++ +++L+ + K + V+ D Sbjct: 803 SQAITIGGTSVLLARMDGLDAKGLREAVDRIKSKLK-TVVVLLASREGDKVQLAAGVSAD 861 Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + + A DL +A+ + GG GGGRP A +GG + D A+A S L++ Sbjct: 862 RVGQIKAGDLVSAAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913 >gi|50084439|ref|YP_045949.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1] gi|59798530|sp|Q6FCT2|SYA_ACIAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49530415|emb|CAG68127.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1] Length = 878 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 531/913 (58%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A+ AWD LT + Sbjct: 61 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALTFAWDFLTSEQWLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY+TVY D+EA+ +W K GL+AD+IIRI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAADRIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HLI+++ ++ +K EG + RV+ DH RS FLIADG+ Sbjct: 241 RISAVLQHVNSNYDIDLFQHLIKSACEIINVKDEG--QPSLRVVADHARSCCFLIADGVN 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + IE TL Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIDVMGDAYPELKNDQARIEATL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L +++ G+ FKLYDT+G P D+ DI R L Sbjct: 359 IREEEQFAKTLEQGLKLLEGELTQLS-GKVIPGETVFKLYDTYGFPTDLTADIARERDLE 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID + F + +E QR RAR +G + S+ + G TQF GY G Sbjct: 418 -IDEVGFEREMEAQRRRAR------DAGKFAVDYNSIVKVEGETQFDGYHATAG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI + GE V+E V G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 -----------------QGEIVAIYKDGEQVDEVVEGDEALIVLNQTPFYAESGGQIGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D ++ D +K FVH IV G L+ + + R + NHSATH Sbjct: 508 GLFKNDTGIFEVQDTKKSGG-AFVHQGIVTMGSLKAAQHVDAIVKADIRAATARNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG+HV Q GS + D LRFD + +P++ +L+ IE VN + N V T Sbjct: 567 LLHAALRQILGTHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLVNAEVIANSAVTT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 627 ELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSVIDEHNFSIELCGGIHVQRTGDIGLFKI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE + AGIRRIEA+TG +A + D ++ + S LK + V RV+ E+ L Sbjct: 687 ISEGGVAAGIRRIEAVTGTKALEVVQKADADIQHINSLLKAQKDQTVERVQAAVEQTSAL 746 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L + IA + + + +D+K L+++ D+++ K++ +I Sbjct: 747 HKQIEQLNQKLANFQAAELLSQVQNIAGRSTLITTVQNIDAKSLRNLHDSVKSKLEDAVI 806 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S++ V + A D+ + A L GG GGG+P +AQ G P K Sbjct: 807 VLAGLEGD-KISLIASVAKQYTAHLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864 Query: 886 DQAIAGVASFLKK 898 + IA + ++L++ Sbjct: 865 EHVIAALPAWLEQ 877 >gi|71735960|ref|YP_275660.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|83305854|sp|Q48G25|SYA_PSE14 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71556513|gb|AAZ35724.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 874 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|262279704|ref|ZP_06057489.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202] gi|262260055|gb|EEY78788.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202] Length = 883 Score = 879 bits (2270), Expect = 0.0, Method: Composition-based stats. Identities = 393/913 (43%), Positives = 526/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 66 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GGLPGS E+G+R+IEIWN VFMQF + N LP S+DTGMGLE Sbjct: 186 SEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTNDGVLHPLPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI R Sbjct: 364 VREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + S+ + G TQF GY Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY----------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 ------------INTTGQGQIIAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+ + ++ + R + NHSATH Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY + VRV+++ D S LCGG HV TG+I L I Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + LK + V RV+ E L Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALDVVQKTDSDIQHINGLLKAQKDQTVERVQANVELVSAL 751 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L S IA + + VD+K L+++ D+++ K+++ +I Sbjct: 752 QKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869 Query: 886 DQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 870 GQVIAALPAWLEQ 882 >gi|104782873|ref|YP_609371.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48] gi|122402439|sp|Q1I6Z8|SYA_PSEE4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|95111860|emb|CAK16584.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48] Length = 874 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWNFLTSDKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W + G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYASDDEAYDIWTQEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ V+Q +NY+IDLF+ L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RISAVMQHVHSNYEIDLFQSLLAAAAEAIGCS--NDEQPSLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL TEMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHKIVAALVTEMGEAFPELKGQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KTEEEQFAKTLEQGLRILEQDLAQLQ-GKVVPGDVVFKLYDTYGFPMDLTGDIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +E QR RAR+ S + SL + AT F+GYD G Sbjct: 418 -IDEAGFEREMEAQRERARSASAFGM------DYNSLVKVDTATDFLGYDTTEG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G+ VE+ G++ VV D+TPFYAE+GGQ+GD+ Sbjct: 465 -----------------QGKVIALYKDGQSVEQLTEGEEGVVVLDRTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH ++ G L ++ +D + S+NHSATH Sbjct: 508 GYLQAGAARFDVRDTTKTGG-AFLHHGVIASGALTVGATVDARVDADVQHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + ++K++ED VN + +N V T Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKALEDIVNREVRRNTEVQT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEAITG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 683 SEGGVASGVRRIEAITGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G E K ++ VT+DL + A DL + +A V+GG G GGRP MAQ GG + D Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSGQLKAGDLMKQAAAVVGGKG-GGRPDMAQGGGVDVASLD 860 Query: 887 QAIAGVASFLKK 898 QA+A F ++ Sbjct: 861 QALALAVPFAEQ 872 >gi|53802423|ref|YP_112920.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath] gi|59798499|sp|Q60BS6|SYA_METCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|53756184|gb|AAU90475.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath] Length = 867 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 370/902 (41%), Positives = 533/902 (59%), Gaps = 46/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF GH ++ SSSL+P NDPTL+FTN+GMV FK++F G+E Y Sbjct: 1 MTSAELRARFLKFFADRGHTVVASSSLVPVNDPTLLFTNAGMVQFKDVFLGREHRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L Sbjct: 61 ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIVYAWEFLTEVLMLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ITVY ED+EA ++W + G+ + RI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PERLWITVYAEDKEAERIWLEEVGVDPGRFTRIATSDNFWSMGDTGPCGPCSEIFYDHGP 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG P E+G+RY+EIWNLVFMQ+E+ LPK S+DTGMGLER+A V+Q Sbjct: 181 SVAGGPPGTPEEDGDRYVEIWNLVFMQYERAGDGTLTPLPKPSVDTGMGLERLAAVMQRV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NNYDIDLF++L++A+ ++ G + + RVI DH+RS +FL+ DG+LP+NEGRGYV Sbjct: 241 RNNYDIDLFRNLVKAAAELAGTTDLAQS--SLRVIADHIRSCAFLVTDGVLPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG EP L+ LC EMG AYPEL++A+ +E+ L E+ERF + Sbjct: 299 LRRIIRRAIRHGYKLGIREPFFYKLVGPLCAEMGQAYPELVEARPRVEQVLDKEEERFAE 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++G+ +LD + LG +++GD AF+LYDT+G P+D+ D+ GL +D+ F + Sbjct: 359 TLEQGMKILDVAIRDLG-SPVISGDTAFQLYDTYGFPVDLTADVAREHGL-QVDMAGFER 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR RARA + A +F GY Sbjct: 417 AMEAQRERARAA------SHFSVDYSQEIHLDVACEFTGY-------------------- 450 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + A+++ G+ V+ +G+ VV ++TPFYAE+GGQ+GD G D Sbjct: 451 ---RNAVEDTRIVALLRDGQAVDRLEAGEDGVVVLEKTPFYAESGGQVGDRGVIRSDSAV 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + +H + G L ++ R ++NHSATHLLH AL + Sbjct: 508 FEVADTRKQGSDLILHRGKLREGALLRGAVCRAEVEQSLRLATALNHSATHLLHAALRRV 567 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P+ LRFD +H +P++ +L IE VN I +N V +M ++ A+ Sbjct: 568 LGEHVTQKGSLVDPERLRFDFSHFEPVSPEQLDEIERLVNREIRRNAEVTAEVMAKDAAM 627 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRV+ + G S+ LCGG H G+I L IVSES + AG+ Sbjct: 628 RLGAMALFGEKYGDDVRVLRI-----GDFSTELCGGIHARRAGDIGLFKIVSESGVAAGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A + + L+ LA +K + + R+++++E+ R L+ + K + Sbjct: 683 RRIEAVTGAAAVEAVEATERLLRRLAERMKAGRDTLEERLDQMFEKNRALERELERLKAK 742 Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 IA V ++ + E D++ L+ ++D L+ ++ S I+L + + K Sbjct: 743 TAGAAGADLASRAVDIAGVKVLAARVDEADARMLRELVDQLKDRLGSAAIVLAAV-EGGK 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT D A DL A + GG GGGRP +AQ+GG + A+ GV + Sbjct: 802 VSLVAGVTRDQTGHIRAGDLVNSVATRI-GGKGGGRPDLAQAGGNRPEELQGALDGVPEW 860 Query: 896 LK 897 ++ Sbjct: 861 VR 862 >gi|330988706|gb|EGH86809.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 874 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--SDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|255319660|ref|ZP_05360869.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262378543|ref|ZP_06071700.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164] gi|255303277|gb|EET82485.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262299828|gb|EEY87740.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164] Length = 897 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 385/924 (41%), Positives = 526/924 (56%), Gaps = 62/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGAEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT + Sbjct: 66 VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFLTSEQWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY TVY D+EAF +W K GL A++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDRLYATVYHTDDEAFDIWNKEIGLDAERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 186 SEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHALPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK------------YEGNNIVNHRVIVDHL 279 R++ VLQ +NY+IDLF+HL++A+ ++ G+ + + +V+ DH Sbjct: 246 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGVDTASLEAEAKEKNTPVHYPASLKVVADHA 305 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS FLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L MG+AYPE Sbjct: 306 RSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGTAYPE 365 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L K IE L E+E+F KTL++GL LL+G L+ L I+ G++ FKLYDT+G P+D Sbjct: 366 LEANKARIEAALIKEEEQFAKTLEQGLKLLEGELTQLK-GSIIPGEIVFKLYDTYGFPVD 424 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + DI R L+ ID F + + QR RAR G + S+ + T+F G Sbjct: 425 LTADIARERDLS-IDEAGFEKEMAAQRQRAREA------GKFAVDYNSIVKVEDETEFSG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD + G + AI + G +V+E G + +V +QTP Sbjct: 478 YDAIEG-----------------------QGQIIAIYKDGTLVDEVTEGDEALIVLNQTP 514 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE+GGQ+GDTG + ++ D +K FVH IV G L+ ++ T+ + Sbjct: 515 FYAESGGQIGDTGIFKNETGIFEVQDTKKSGN-AFVHQGIVTMGNLKVTQNVEATVKAEL 573 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + NHSATHLLH AL ILGSHV Q GS + D LRFD + +P+T +L+ IE V Sbjct: 574 RAATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLV 633 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTH 698 N + N V T +++ E A GA L G KY VRV+S+ + S LCGG H Sbjct: 634 NAEVIANTAVTTELLDIETAKTKGAMMLFGEKYGSEVRVLSMGSIIEEKNFSVELCGGIH 693 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TG+I L I SES + AGIRRIEA+TG +A + D + + S LK + V Sbjct: 694 VKRTGDIGLFKITSESGVAAGIRRIEAVTGTKALELVQKADSDINQINSLLKAQKDQTVE 753 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813 RV+ E LQ + +L + +A + + + +D+K L+++ Sbjct: 754 RVQTAVENVSALQKQIEQLNQKLANFQAAELLSQVQTVAGRSTLITTVQGMDAKSLRNLH 813 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D+ + K+ +I+L G+ + K S++ V +D A D+ + A L GG GGG+P Sbjct: 814 DSTKSKLDHAVIVLAGVDGD-KVSLIASVAKDFTSSIKAGDIIKHLATEL-GGKGGGKPD 871 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 +AQ G P K +Q +A + ++L+ Sbjct: 872 LAQGGAPLNEKFEQVMADLTAWLE 895 >gi|331012342|gb|EGH92398.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 874 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 386/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ I R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGGIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|257482821|ref|ZP_05636862.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628265|ref|ZP_06461219.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866242|gb|EGH00951.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 874 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|299770946|ref|YP_003732972.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1] gi|298701034|gb|ADI91599.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1] Length = 883 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 389/913 (42%), Positives = 523/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 6 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 66 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLA 125 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 126 LPKDRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 186 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI R Sbjct: 364 VREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + S+ + G TQF GY Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY----------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 465 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+ + ++ + R + NHSATH Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY + VRV+++ D S LCGG HV TG+I L I Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + LK + V RV+ E L Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSAL 751 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L S I+ + + VD+K L+++ D+++ K+++ +I Sbjct: 752 QKQIEQLNQKLANFQASELIDQVQTISGRQTLITTVQGVDAKSLRNLHDSVKSKLENAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869 Query: 886 DQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 870 GQVIAALPAWLEQ 882 >gi|253999899|ref|YP_003051962.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4] gi|253986578|gb|ACT51435.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4] Length = 874 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 519/911 (56%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSKEIRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L Sbjct: 61 ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EA+ +W K G+ ADK+IRI N DNFW M +TGPCGPC+E Sbjct: 121 KEKLLVTVYAEDDEAYDIWTKEMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + VLQ NY+IDLF+ LI+A+ + T + +V+ DH+R+ SFLIADG++P Sbjct: 241 SAVLQGVHANYEIDLFQALIKAAARETKTTD--LESPSLKVLADHIRACSFLIADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+P L EMG AYPEL+ K + +TL+ Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNKTRVMDTLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF +T++ G+ +L+ L+ + + NG+ AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEDRFFETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + A+ Q+ +ARA S +L+ ATQF GY+ L Sbjct: 419 VDAAAF-DAAMARQKDQARAAGKFKMSA-------NLEYDGAATQFHGYEKLESD----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++V A+ + G V+ G+ VV D TPFYAE+GGQ+GD+ Sbjct: 466 ------------------ALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK +F HH +V G + SL ++ + R NHSATH Sbjct: 508 GELRASDGIFSVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS + + RFD H+ P+T E++ +E VN I N Sbjct: 568 LMHKALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQA 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M EDA +GA L G KY D VRV+ + S LCGGTHVS TG+I L I Sbjct: 628 RVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVSRTGDIGLFKIT 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ES + AG+RR+EA TG+ A + Q L +A+ LK V ++ ++ + + L+ Sbjct: 682 GESGVAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLE 741 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ K +L + + ++ + D+ L+ MD L+ K++S I+ Sbjct: 742 KELARLKSKLASSQGDDLVNQAVDLGGIKVLAATLDGADANTLRETMDKLKDKLKSAAIV 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+ VT DL+ + A +L A +GG G GG+P MA +GG + ++ Sbjct: 802 LASA-NDGKVSLAAGVTPDLIAKLKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDASQLP 859 Query: 887 QAIAGVASFLK 897 QA++ V ++K Sbjct: 860 QALSSVEGWVK 870 >gi|126462865|ref|YP_001043979.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029] gi|205830188|sp|A3PLJ1|SYA_RHOS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126104529|gb|ABN77207.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029] Length = 883 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 432/874 (49%), Positives = 567/874 (64%), Gaps = 37/874 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D EA ++WKK++GL ++IIRI TNDNFW M TGPCGPC+EIFFD G Sbjct: 121 PKEKLLVTVYHTDHEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ L HL + L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E +GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEQAEGQVLALVAAGAETASVGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV KK +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HS+ ++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ DG +S LCGGTHVS G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG+ A ++L Q ++L +A+ LK + +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALTYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755 Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ + + + +I V F++ ++ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 KA++ VT DL DR +AV L + +A+ L Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848 >gi|212704759|ref|ZP_03312887.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098] gi|212671822|gb|EEB32305.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098] Length = 889 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 379/913 (41%), Positives = 531/913 (58%), Gaps = 43/913 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +LEFF +NGH++LPS LIP NDPTL+FTN+GMV FK F G+E Sbjct: 1 MLTAKEIRRRYLEFFARNGHDILPSGPLIPPNDPTLLFTNAGMVQFKKFFLGEEVRDVPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK AI AW +T+E +L Sbjct: 61 VTTSQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAITWAWKFVTEELEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL++TV+ ED+EA +W++++GL A++I+R+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 PKERLWVTVFREDDEAAAIWQEVAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + +R++EIWNLVF QF+Q R L + +IDTGMGLER+A V Q Sbjct: 181 EDMACGPDCGIGKCDCDRFLEIWNLVFTQFDQHADGTRDRLARPNIDTGMGLERIAAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSSSFLIADGILP 292 K +N+D DLF+ +IQ + ++ G+KY + RVI DH R+++FLIADG LP Sbjct: 241 GKRSNFDCDLFQDIIQYAAELAGVKYSFSAPDTNDVDTALRVIADHARAAAFLIADGTLP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRR++RRA+ +A L+G EP + + + MG YPEL + I + Sbjct: 301 SNESRGYVLRRLIRRALRFATLMGVHEPFLYKVARKVTEIMGEDYPELTEHADFIARAVH 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E++RF TL +GL LL+ L+ L K D+++ G+ FKL DT+G PLDI+ D+ RG Sbjct: 361 EEEQRFSLTLGKGLALLEDQLAELEKAGDKVIPGEFCFKLSDTYGFPLDIITDVSEKRGF 420 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 + +D+ F + EQR RAR G G+ ++ L + + F GY L G Sbjct: 421 S-VDVAGFEAHMAEQRRRARESQKKSGLLGQDGSGSSLFQQLADDGLQSVFTGYSGLNGQ 479 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V + + G VEE +G+K VV +QTPFY E+GG Sbjct: 480 GRI----------------------VALLDESGLSVEELPAGRKGYVVTNQTPFYGESGG 517 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q GDTG G ++ D QK A + VH+ VE+G+LR + + L+++ R + N Sbjct: 518 QAGDTGRMEGPDGAARVLDTQKPAPTLIVHNIEVEQGLLRIDQEVALSVEEDARMATARN 577 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS THLLH AL ++LG+HV Q GS + LRFD +H + EL ++E VN I + Sbjct: 578 HSCTHLLHAALRSVLGTHVKQAGSLVNSQRLRFDFSHIAALPPEELAAVERQVNRAIMAD 637 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 PV T+ M ++A+AS A AL KY D VRVVS+ D S LCGGTH+S TG+ Sbjct: 638 YPVCTKEMKHDEAVASVAMALFNEKYGDTVRVVSMGD-DAHTESVELCGGTHLSHTGQAG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 IVSES + AG+RRIEA+TG A + Q +L L++ LK G + RV+ + + Sbjct: 697 SFLIVSESGVAAGVRRIEAVTGWNAYDLAVAQRAELHDLSALLKAKPGQLAERVQALHSD 756 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +KL+ K K + V ++ + V K L+ +MD ++ +I SG Sbjct: 757 VKKLRKASEKAAASPATGADLVQKATEVNGVKLLTAKLDGVPVKALRDIMDDVRSRIPSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + L + E K +L+ V++DL RF A L + A GG GGGRP +AQ+GG + Sbjct: 817 VACLATVEGE-KVGLLLYVSKDLHGRFTAPALIKDVAAPC-GGSGGGRPDLAQAGGTKAD 874 Query: 884 KADQAIAGVASFL 896 + A + + Sbjct: 875 GVEAAFDVLRDKI 887 >gi|293608692|ref|ZP_06690995.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829265|gb|EFF87627.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 878 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 390/913 (42%), Positives = 523/913 (57%), Gaps = 52/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + Sbjct: 61 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NYDIDLF+HL++A+ + G++ +G + RV+ DH RS FLIADG+ Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDQG--QPSLRVVADHARSCCFLIADGVN 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL++GL LL+G L+ L D+ + G FKLYDT+G P D+ DI R Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + QR RAR +G + ++ + G TQF GY Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY----------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + AI + G V+E G + +V +QTPFYAE+GGQ+GDT Sbjct: 460 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D +K FVH IV G L+ + ++ + R + NHSATH Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I Sbjct: 627 ELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++ + LK + V RV+ E L Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALDVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSAL 746 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + +L S IA + + VD+K L+++ D+++ K+++ II Sbjct: 747 QKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAII 806 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 807 VLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864 Query: 886 DQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 865 GQVIAALPAWLEQ 877 >gi|320323208|gb|EFW79296.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. B076] gi|320329761|gb|EFW85750.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 874 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K + VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLAAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|289650414|ref|ZP_06481757.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250] Length = 874 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQLLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|83858787|ref|ZP_00952309.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] gi|83853610|gb|EAP91462.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] Length = 886 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 450/909 (49%), Positives = 596/909 (65%), Gaps = 38/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR+ FL+FF K GHE++ S+ L+P +DPTL+F N+GMVPFKN+FTG E+ Y Sbjct: 1 MTALRDIRSQFLDFFAKEGHEIVQSAPLVPQDDPTLLFVNAGMVPFKNVFTGAERRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW ++T+EF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDNAIEFAWKMVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY ED+EA LW+KI+GLS D+IIRI+T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYSEDDEAAALWRKIAGLSDDRIIRISTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG P E+G+R+IEIWNLVFMQFEQQ ER LPK SIDTGMGLER+A VLQ Sbjct: 181 PDIWGGPPGTPEEDGDRFIEIWNLVFMQFEQQAGGERINLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD+DLFK LI ASE+ +K EG+ + +HRVI DHLRS+SFLIADG+ P+NEGRGY Sbjct: 241 VHNNYDVDLFKTLINASEEALKVKAEGDALASHRVIADHLRSTSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EP++ L L EMG A+PEL +A +IEETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAHLLGANEPVLFGLAKTLSDEMGEAFPELPRALPVIEETLRGEEERFQ 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD ++L + + L G+ AFKLYDT+G PLD+ +D L RGL+ +D F+ Sbjct: 361 RTLGRGLTLLDEATANLKEGDALPGETAFKLYDTYGFPLDLTEDALRTRGLS-VDHAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G E +WFS++++ GAT F+GY G Sbjct: 420 AAMERQRADARASWTGSGQAAPEALWFSVRDRLGATDFVGYHTHDG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + AIV G E +GQ E++F TPFYAE GGQ+GD G D Sbjct: 466 ---------QSELTAIVSDGAEQSELSAGQGAELIFKSTPFYAEGGGQIGDAGVITFDNG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R ++DVQK+A I+ H ++E G ++ + ++D + R ++ NHSATHLLH AL Sbjct: 517 ARFIVSDVQKRAGSIYAHIGVLEEGGIKIGDAASQSVDAERRTKVRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD +H+K +T AE +IE VN +I QN T M E Sbjct: 577 DVLGPHVTQKGSYVGPDRLRFDFSHAKALTEAETAAIEAQVNAVIRQNAEAKTAEMTPEK 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL G KY + VRV+++ D +S LCGG HV+ TG+I L IV ESS Sbjct: 637 AIEAGALALFGEKYGETVRVLAMGDSLKSDDKAYSVELCGGIHVNRTGDIALFKIVGESS 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 AG+RR+EA+TG+ AR L + K K A+ LKV +V R+E + E + L+ A Sbjct: 697 AAAGVRRLEAVTGEAARQWLEAEANKAKDAAAALKVPTVELVERIEALQAERKTLERQLA 756 Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K QL + +I + ++ ++ V K+L+ ++D +K++ SGI Sbjct: 757 EAKKQLAMGGGGGGGAAPAGPEEINGIKLIARVVEGVGGKDLRGLVDEARKQMGSGIAAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG+ + KA++ + +T+DL +AVD R + +GG GGGGRP AQ+GGP+G+KA+ Sbjct: 817 VGV-NDGKAALAVGLTDDLTGSMSAVDFVRAGSAAVGGKGGGGRPDFAQAGGPDGDKAED 875 Query: 888 AIAGVASFL 896 A+A + L Sbjct: 876 ALAAIRQVL 884 >gi|241759977|ref|ZP_04758075.1| alanine--tRNA ligase [Neisseria flavescens SK114] gi|241319431|gb|EER55861.1| alanine--tRNA ligase [Neisseria flavescens SK114] Length = 874 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 369/912 (40%), Positives = 520/912 (57%), Gaps = 59/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + Sbjct: 60 ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 ++ + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGP Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 CSEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGL Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+ Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GSKKLDGEIIFKLYDTYGFPYDLTADICRERN- 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F + + A + + K L T+F GY Sbjct: 416 IELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE-------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S V A+ + GE V E G + VV D TPFYAE+GGQ+GD Sbjct: 461 ---------------RQTESKVLALYKDGEQVNELNEGDEGAVVIDFTPFYAESGGQVGD 505 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G R ++ D QK +F + G L+ S+ +D + R NHSAT Sbjct: 506 VGYIFAGENRFEVHDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 566 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769 +SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A+ K +L V + + ++ I + L+ ++ L K + + Sbjct: 741 LEKELARAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAV 799 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 800 ILLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAK 857 Query: 885 ADQAIAGVASFL 896 + + V ++ Sbjct: 858 LPEVLNSVKDWV 869 >gi|330881471|gb|EGH15620.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 874 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTPVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K + VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLAAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|54297712|ref|YP_124081.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris] gi|59798487|sp|Q5X4B7|SYA_LEGPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|53751497|emb|CAH12915.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris] Length = 860 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 372/904 (41%), Positives = 540/904 (59%), Gaps = 52/904 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MKSSEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ + Sbjct: 61 ATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY ED EA +W K +S ++ R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 AERLWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG P E+G+RYIEIWNLVFMQF + + +LPK S+DTGMGLER+A V+Q Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHLLPKPSVDTGMGLERLAAVIQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID F++LI+A Q+ N + +VI DH+RS SFLI DG+LP+NEGRGYV Sbjct: 241 HSNYEIDSFQYLIKAIAQLGQN--IDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG P L+ L MG AYPELI +K IE L+ E+ +F + Sbjct: 299 LRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFTR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL LL + +L E L+G+VAFKLYDT+G P+D+ DI+ +GL ID+ +FNQ Sbjct: 359 TLEQGLRLLQDHIKNLKGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFNQ 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +++QR +++A S + ++ + ++F GY+ Sbjct: 417 LMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------- 451 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + + ++Q+G V+ G K V+ D TPFYAE+GGQ+GD G IG Sbjct: 452 ----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKNCS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 Q+ D QK + + + V +G L ++S+ +D+ R + +NH+ATHLLH AL I Sbjct: 508 FQVDDTQKVGQAVVHY-GEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKKI 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 +G HV Q GS + + RFD +H + + +++ IE+ VN I N V+T++M+ E A Sbjct: 567 VGQHVQQRGSLVDAERARFDFSHFEALNPQQIQQIEEVVNAQIRANNEVITQVMDIESAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL G KY+D VRV+S+ G S LCGGTH TG+I L IV+E I +GI Sbjct: 627 QSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASGI 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777 RRIE +TG+ A + + Q + +LA+ LK + ++ ++ ++ + + + + AK Sbjct: 682 RRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKISQLLLDNKNQEKMIAKLLSE 741 Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 K Q + D+ +I +N + + +DS+ ++ MD L+ +I S +I+L I + K Sbjct: 742 KAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTIEQN-K 800 Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +V+ V+++++ + +A L R G GGGR MAQ GG + I + Sbjct: 801 MNVIAGVSKNIIGKTPSAAQLVRHLC-----GKGGGRDDMAQGGGNVPEDLNSKIKEIRE 855 Query: 895 FLKK 898 ++K Sbjct: 856 MIEK 859 >gi|326566717|gb|EGE16856.1| alanyl-tRNA synthetase [Moraxella catarrhalis 103P14B1] Length = 887 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 367/909 (40%), Positives = 514/909 (56%), Gaps = 54/909 (5%) Query: 12 LEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAG 71 L FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + QKCVRAG Sbjct: 8 LTFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSSQKCVRAG 67 Query: 72 GKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITV 129 GKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT K L + RLY+TV Sbjct: 68 GKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPKDRLYVTV 127 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGEC 182 Y D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EIF+D GE Sbjct: 128 YHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEIFYDHGEH 187 Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLP E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ ++Q Sbjct: 188 IWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERISAIMQGVH 247 Query: 242 NNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ D+F L+ + + + N + +V+ DH+RS +FLIADG++P+NEGRGY Sbjct: 248 GNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIPSNEGRGY 307 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + E+E+F Sbjct: 308 VLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAILKEEEQFA 367 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ ID F Sbjct: 368 KTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT-IDEAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ EQR+RAR + +L + AT+F+GY+ L Sbjct: 427 LSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND------------- 467 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G + Sbjct: 468 ----------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELGEISTESG 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D QK + I H +V+ G + S + Q R + NHSATHLLH AL T Sbjct: 518 VFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKNHSATHLLHAALRT 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P I++ + A Sbjct: 577 ILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVEILDIDSA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I+SE I Sbjct: 637 KNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKIISEQGIS 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R L+ + Sbjct: 697 AGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERL 756 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-- 830 + + I + ++ +D+K L+++ D ++ K+ GI++L I Sbjct: 757 NQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLADGIVILASIYT 816 Query: 831 -SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K ++ V + L + A D+ + ++ L GG GGG+P AQ G + + + Sbjct: 817 ADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGATDVANLPKLM 875 Query: 890 AGVASFLKK 898 G+ ++ + Sbjct: 876 TGLIDWIGE 884 >gi|296313800|ref|ZP_06863741.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768] gi|296839624|gb|EFH23562.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768] Length = 873 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 371/914 (40%), Positives = 523/914 (57%), Gaps = 59/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTT-ELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + Sbjct: 60 ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 ++ + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGP Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 CSEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGL Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+ Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVIADHIRSCSFLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN- 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F + + A + + K L + T+F GY Sbjct: 416 IEPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE-------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 461 ---------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGD 505 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G R ++ D QK +F + G L+ S+ +D + R NHSAT Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 566 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769 +SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A+ K +L V + ++ I + L+ ++ L K + + Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAV 799 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 800 ILLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADK 857 Query: 885 ADQAIAGVASFLKK 898 + +A V ++K+ Sbjct: 858 LPEMLASVEGWVKE 871 >gi|323142770|ref|ZP_08077483.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066] gi|322417415|gb|EFY08036.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066] Length = 874 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 377/910 (41%), Positives = 536/910 (58%), Gaps = 53/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+T+LEFF+KNGHE++ SSSL+P NDPTL+FTN+GM FK+I+ G+E Y Sbjct: 3 MTTDEIRSTYLEFFRKNGHEVVRSSSLVPYNDPTLLFTNAGMNQFKDIYLGKETRPYLRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGK NDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW LLT+ F L Sbjct: 63 TTAQKCVRAGGKQNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIYYAWTLLTEGFKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + L +TVY +D EA+ +WK + GL A+KIIRI N DNFW M +TGPCGPCSE Sbjct: 123 KESLTVTVYADDNEAYDIWKNVIGLPAEKIIRIGDNKGGAFNSDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+R+IEIWN+VFMQ+ ++ L K ID G+GLER+ Sbjct: 183 IFYDHGPGVWGGPPGSPEEDGDRFIEIWNIVFMQYNRKADGTFEKLKKPMIDNGLGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NYDIDLF+ LI + ++ + + + RVI DH+RS SFLIADG+LP+ Sbjct: 243 AAVLQGVHSNYDIDLFRTLIAKTAEILNVSD--LSEKSLRVISDHIRSCSFLIADGVLPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + RL+G + L+ LC MG AYPELI+ + LIE+TL+ Sbjct: 301 NEGRGYVLRRIIRRAVRHGRLMGAKDVFFYKLVGTLCELMGKAYPELIEQRQLIEKTLKK 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F TLDRGL +LD L LG + + G+V FKLYDT+G P D+ QD++ RG + Sbjct: 361 EEEQFLNTLDRGLAMLDSELDKLGANRTIPGEVVFKLYDTYGFPADLTQDVVRDRGYI-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F + + +QR RA++ S + + + F GY+ L Sbjct: 420 DMDGFEKEMTKQRERAKSASTFGI------DYNKELKLSDISIFDGYNHL---------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + ++ + E +E A + ++V +V D+T FY E GGQ+GDTG Sbjct: 464 -------------SCEGKIVSMFKGSEPIESASTDEEVIIVLDKTTFYGEMGGQIGDTGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + + + I VE G ++ +D Q R+ ++ +HSATHLL Sbjct: 511 LRCGHNLFIVENTKHVGKAIIHV-GRVELGQFSVGQTVTAEVDAQRRKDIASHHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD LRFD +H P++ E +++ VN I +N PV T + Sbjct: 570 HAALRKVLGDHVFQKGSSVGPDRLRFDFSHPHPLSLDERQAVSALVNKAIRENYPVTTEV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ A SGA AL KY VRVVS+ G S LCGGTHV+ TG++ I+S+ Sbjct: 630 MDLNKAKLSGAMALFDEKYEGEVRVVSM-----GEVSKELCGGTHVARTGDLGYFIIISD 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 SI +GIRRIEA+TG+ A + L ++ L+ +V+ +V+ + + L+ Sbjct: 685 ESIASGIRRIEALTGEAAIEYQQHLARMLAYTSTMLQTDNFSVLEKVKGLINNTKSLEHE 744 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K ++ D +I + + + +++EL+ +D L+ ++S I+L Sbjct: 745 NMLLKEKIVHMDAKALAYDAVEINGIKIVIAKVDSYNARELRLAVDELKNHLKSCAIVLG 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + E K S++ +++DL + A +L ++A + G GGGRP MAQ+GG D+A Sbjct: 805 TVEGE-KVSLIAALSKDLTSKVKAGELVNVAASCVN-GKGGGRPDMAQAGGTKPEGLDEA 862 Query: 889 IAGVASFLKK 898 + +FL + Sbjct: 863 LEKARTFLTE 872 >gi|313201870|ref|YP_004040528.1| alanyl-tRNA synthetase [Methylovorus sp. MP688] gi|312441186|gb|ADQ85292.1| alanyl-tRNA synthetase [Methylovorus sp. MP688] Length = 874 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 520/911 (57%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKSKEIRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L Sbjct: 61 ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EA+ +W + G+ ADK+IRI N DNFW M +TGPCGPC+E Sbjct: 121 KEKLLVTVYAEDDEAYDIWTREMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + VLQ NY+IDLF+ LI+A+ + T + +V+ DH+R+ SFLIADG++P Sbjct: 241 SAVLQGVHANYEIDLFQALIKAAARETKTTD--LESPSLKVLADHIRACSFLIADGVIPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+P L EMG AYPEL+ + + +TL+ Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNQTRVMDTLKQ 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF +T++ G+ +L+ L+ + + NG+ AFKL+DT+G PLD+ D+ R + Sbjct: 359 EEDRFFETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + A+ Q+ +ARA S +L+ + ATQF GY+ L Sbjct: 419 VDAAAF-DAAMARQKDQARAAGKFKMSA-------NLEYEGAATQFHGYEKLESD----- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++V A+ + G V+ G+ VV D TPFYAE+GGQ+GD+ Sbjct: 466 ------------------ALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK +F HH +V G + SL ++ + R NHSATH Sbjct: 508 GELRASDGIFTVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS + + RFD H+ P+T E++ +E VN I N Sbjct: 568 LMHKALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQA 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R+M EDA +GA L G KY D VRV+ + S LCGGTHVS TG+I L I Sbjct: 628 RVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVSRTGDIGLFKIT 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ES + AG+RR+EA TG+ A + Q L +A+ LK V ++ ++ + + L+ Sbjct: 682 GESGVAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLE 741 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ K +L + + ++ + D+ L+ MD L+ K++S I+ Sbjct: 742 KELARLKSKLASSQGDDLVNQAVDLGGIKVLAATLEGADANTLRETMDKLKDKLKSAAIV 801 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K S+ VT DL+ + A +L A +GG G GG+P MA +GG + ++ Sbjct: 802 LASA-NDGKVSLAAGVTPDLIAKLKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDASQLP 859 Query: 887 QAIAGVASFLK 897 QA++ V ++K Sbjct: 860 QALSSVEGWVK 870 >gi|84686864|ref|ZP_01014748.1| alanyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654] gi|84665061|gb|EAQ11541.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654] Length = 882 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 427/892 (47%), Positives = 574/892 (64%), Gaps = 40/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+KNGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MASLNDIRSTFLSYFEKNGHTVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+T+EF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIPFAWELITREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK G+ ++IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKK-VGVPEERIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS TG+ G++ V+HRVI DHLRS+SFL+ADG++P+NEGRGY Sbjct: 240 SHDNYDTDLFKALIEASAHATGVDPYGDHNVHHRVIADHLRSTSFLMADGVMPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P L +MG AYPEL QA+ +IEETL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPELVRQMGQAYPELGQAQSMIEETLLTEETRFQ 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L+ L + L G+ AFKLYDT G PLD+ QD L + +D F+ Sbjct: 360 ATLDRGLKLLDEELAKLPEGAALPGEAAFKLYDTFGFPLDLTQDALREKDR-LVDTEGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +W+ + E+ G T+F+GYD Sbjct: 419 AAMAEQKAKARAAWSGSGEAADATVWYDIAEEKGTTEFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G+ ++ +G V++V +QTPFYAEAGGQ+GDTG + Sbjct: 461 -----TEKAEGQIVALVADGDKTDKVDTG-SVQIVVNQTPFYAEAGGQVGDTGTITTETG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++TD KK G+F+H A V G + LT+++ R + NHSATHLLH AL Sbjct: 515 KARVTDT-KKVAGVFIHFAEVVEGSIERGQGAELTVEHDRRSAIRANHSATHLLHEALRE 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H+K +T+ E+ +E +VN + QN PV TRIM +DA Sbjct: 574 ALGDHVAQRGSLNAPDRLRFDFSHNKALTADEIGRVERDVNAYVRQNTPVETRIMAPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ D +S LCGGTHV TG+I + +E Sbjct: 634 RALGAQALFGEKYGDEVRVVSMGRAATGKGVDKETYSIELCGGTHVKRTGDIGAFVLTAE 693 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG+ A L ++ + + LKVS+ +V+ R++ + +E + L Sbjct: 694 SASSAGVRRIEALTGEAAMGELRRREMLMSEVEGLLKVSEQDVLTRLQALLDERKTLAGQ 753 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +L + + ++ V F + ++ V ++L ++D + ++ SG ++L+ Sbjct: 754 VDQLRRELAMSGGAGAGPDAEQVNGVAFFAQSLTGVSGRDLPPLIDEHKARLGSGAVLLI 813 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + KA+V VT DL D +AVDL R + LGG GGGGRP MAQ GG Sbjct: 814 A-DVDGKAAVAAGVTPDLTDTVSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 864 >gi|298488157|ref|ZP_07006194.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157436|gb|EFH98519.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 874 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 386/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V ++ ++G+ V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SASVVSLYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R ++D K F+HH +V G L + + + R +NHSATH Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNAEIRKNTEVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IV Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDMSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 SALALAVPFVEQ 872 >gi|258545023|ref|ZP_05705257.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826] gi|258519721|gb|EEV88580.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826] Length = 876 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 370/893 (41%), Positives = 522/893 (58%), Gaps = 55/893 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL++F ++GH+++ SSSL+P NDPTL+FTN+GMV FK+IFTG E Y+ T Sbjct: 8 STAEIRRAFLDYFAEHGHKIVHSSSLVPGNDPTLLFTNAGMVQFKDIFTGSESRDYKRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 68 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTQVFGLPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCSE 174 +L +TVY ED+EAF +W+ GL DKIIRI DNFW+M +TGPCGPCSE Sbjct: 128 EKLCVTVYHEDDEAFAIWRDKVGLPEDKIIRIGDKPGKAKYESDNFWAMGDTGPCGPCSE 187 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+R+IEIWN+VFMQFE+ LP+ SIDTGMGLER+ Sbjct: 188 IFYDHGPDVWGGPPGSPEEDGDRFIEIWNIVFMQFERDASGTMKPLPRPSIDTGMGLERI 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+ID+F++LI A+ + TG + +VI DH+R++ FL+ DG+LP Sbjct: 248 AAVLQGVHSNYEIDIFRNLIAAAAEATGCDDLAQT--SLKVIADHIRATVFLMVDGVLPG 305 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRIMRRA+ + LG +P L+ L EMG AYPE+++A+ I + +R Sbjct: 306 NEGRGYVLRRIMRRAIRHGYKLGQNQPFFYKLVAPLVAEMGEAYPEIVEAEARITDAVRR 365 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +TL+ GL +L+ L + EI G+ FKLYDT+G P+D+ DI RGL + Sbjct: 366 EEERFAQTLEAGLEVLEKALGEMRGTEI-PGETVFKLYDTYGFPVDLTADIARERGLT-L 423 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ ++ A+ EQR RA+A + + G T F GY+ Sbjct: 424 DMDGYDAAMAEQRERAKAAGKFDAAQK--------LDISGKTAFDGYE------------ 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+ + I G+ V + +G + VV D+TPFY E+GGQ+GD+G Sbjct: 464 -----------KESGSAQIMQIFADGKAVTKLDAGARGVVVLDRTPFYGESGGQVGDSGT 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ D QK+ + F+H VE+G + + ID + R + +HSATHLL Sbjct: 513 LRTTSGVFRVEDTQKQGD-AFLHIGHVEQGDISVGETAQAEIDRERRAAIKRHHSATHLL 571 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL + LG+HV Q GS + RFD +H K +++A++ +E +N I N PVV Sbjct: 572 HKALRSTLGTHVQQKGSLVDERRTRFDFSHDKALSAADIAQVEAMMNAQILGNAPVVIEQ 631 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+R+ A GA AL G KY D VRVVS+ S LCGGTHV GEI L +VS+ Sbjct: 632 MSRDAAQKKGAMALFGEKYGDVVRVVSMG---DDGFSIELCGGTHVGRLGEIGLAKVVSQ 688 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 ++ AG+RRIE + G A HL D L A+ LK ++ R+ + ++ + L+ Sbjct: 689 GAVSAGVRRIEVVCGLAALEHLTHSDALLTESAALLKTDGEHLPERISALQQQLKTLEKE 748 Query: 774 HAKRKLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K QL I ++ +D+ L+ D L+ ++ + ++++ Sbjct: 749 VQTLKRQLAQGGDGGGAEIQVINGWKTLALQRDGIDNATLRDTADQLRDRLGADVVVIGS 808 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + + A +++ V + + +A ++ R A + GG GGGRP AQ+GG N Sbjct: 809 VD-DDTARLIVSVGKTA-NGLHAGNIIRELAVHI-GGKGGGRPDFAQAGGKNP 858 >gi|260222905|emb|CBA32940.1| Alanyl-tRNA synthetase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 878 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 365/917 (39%), Positives = 523/917 (57%), Gaps = 65/917 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +V+ IR +FL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 1 MSVADIRKSFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRNYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++ AW+LLT + L Sbjct: 61 ASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRIT-------TNDNFWSMAE 165 +LY TVY ED+EA+ +W+ I +G + + +IIRI +DNFW MA+ Sbjct: 121 AEKLYATVYQEDDEAYAIWEDIFVKAGWTPERVKQEGRIIRIGDNKGGRYKSDNFWMMAD 180 Query: 166 TGPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 TGPCGPCSEIF+D G IPGG P E+G+R+IEIWN VFMQF LP + Sbjct: 181 TGPCGPCSEIFYDHGAHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMDETGAVTPLPAPCV 240 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284 DTGMGLER+A +LQ +NY+IDLF LI+A+ + TG + RVI DH+R+++F Sbjct: 241 DTGMGLERLAAILQHVHSNYEIDLFDALIKAASRETGCSD--LTNKSLRVIADHIRATAF 298 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 L++DG++P+NEGRGYV RRI+RRA+ + LG P L+ L MG+AYP + + Sbjct: 299 LVSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVQVMGAAYPNMASQE 358 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I E LR E+ERF +TL G+ +LD L+ G ++L G+VAFKL+DT+G PLD+ D+ Sbjct: 359 ARITEVLRVEEERFFETLATGMQILDEALA--GGVKVLPGEVAFKLHDTYGFPLDLSADV 416 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G +D F A+E Q+++ RA K+ +L+ F+GY+ L Sbjct: 417 CRENG-VEVDSAGFTAAMEAQKAKGRAAGKF-------KMDKALEYTGAGNTFVGYEHL- 467 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S+ + A+ G V E +GQ +V D TPFYAE+ Sbjct: 468 ----------------------TQSAKIVALYADGTAVSELKAGQDGVLVLDTTPFYAES 505 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G D ++ D QK +F HH ++ G+LR ++ +D R Sbjct: 506 GGQVGDEGAVFSDAGLFEVGDTQKIKADVFGHHGTLKTGVLRVGDAVTAHVDAAKRAATV 565 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHL+H AL +LG HV Q GS + + RFD H+ P+T+ +++ IE VN + Sbjct: 566 RNHSATHLMHKALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTAEQIRQIEAKVNAEVL 625 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N R+M+ E A +GA L G KY + VRV+ + S LCGGTHV +TG+ Sbjct: 626 ANAAAQARVMDIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVHATGD 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L +V E + AG+RRIEA+TG A +L ++ + + A+ LK + R+ +I Sbjct: 680 IGLFKVVGEGGVAAGVRRIEAVTGANALHYLQDLEDTVGAAAATLKTPVAELGNRLGQIV 739 Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ + L+ A K +L S + V ++ + D+K L+ MD L+ K Sbjct: 740 DQVKALEKEVAALKGKLASAQGDELVSSAVDVNGVKVLAAKLEGADAKTLRDTMDKLKDK 799 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +++ +I+L + + K + VT D + A +LA A + GG GGG+ MA +GG Sbjct: 800 LKTAVIVLGAVDGD-KVQIAAGVTNDTTAKVKAGELANFVASQV-GGKGGGKADMAMAGG 857 Query: 880 PNGNKADQAIAGVASFL 896 K A+A V +++ Sbjct: 858 TEPAKLAGALASVQAWV 874 >gi|89899401|ref|YP_521872.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118] gi|122480046|sp|Q221G2|SYA_RHOFD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89344138|gb|ABD68341.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118] Length = 876 Score = 876 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 364/907 (40%), Positives = 524/907 (57%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR FL+FF GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 9 SVADIRKIFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ W+LLTK + L Sbjct: 69 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWGWELLTKVYKLPA 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY +D+EA+ +W + GL ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 129 DKLWATVYIDDDEAYNIWTQEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS E +G+RYIEIWN VFMQ++ Q LP +DTGMGLER+A Sbjct: 189 FYDHGPAIAGGPPGSPEQDGDRYIEIWNHVFMQYDMQPDGSVKPLPAPCVDTGMGLERLA 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG GN + RVI DH+R+++FL++DG+LP+N Sbjct: 249 AILQHVHSNYEIDIFDALIKAAARETGCTDLGNK--SLRVIADHIRATAFLVSDGVLPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+P L T MG AYP L I + L++E Sbjct: 307 EGRGYVQRRIIRRAIRHGYKLGQKAPFFYKLVPDLVTLMGEAYPGLATQAERIAQVLQAE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L G ++L GDVAFKL+DT G PLD+ D+ RG +D Sbjct: 367 EERFFETLANGMQILDETL--TGDAKVLPGDVAFKLHDTFGFPLDLSADVCRERG-VEVD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F+ A+E+Q+++ RA + +L+ F+GY+ L Sbjct: 424 EAGFHAAMEKQKAQGRAAGKFR-------MDRALEYSGDGNDFVGYERLTEV-------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + A+ V E +GQ VV TPFY E+GGQ+GD G Sbjct: 469 ---------------TKIVALYADSTPVSELKAGQAGVVVLAATPFYGESGGQVGDQGAI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 DG + D QK +F HH +++ G L+ + ++ R NHSATHL+H Sbjct: 514 FSDGAMFDVADTQKIKADVFGHHGVLKSGALKIGDVVTAHVNASLRAATQRNHSATHLMH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + + RFD H+ P+T +++ +E VN I N +R+M Sbjct: 574 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTDEQIREVEARVNSEILSNAATQSRVM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A +GA L G KY + VRV+ + S LCGGTHV+ TG+I L +V+ES Sbjct: 634 DIDAAQETGAMMLFGEKYGESVRVLDIGA------SRELCGGTHVARTGDIGLFKVVAES 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A S+L ++ + +A LK + RV + + + L+ Sbjct: 688 GVASGVRRIEAVTGQNALSYLQDLEDTVTQVAGTLKAPVVEINERVAGVLDHLKSLEKEI 747 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + + + ++ D+K L+ MD L+ K++S +I+L Sbjct: 748 AALKGKLASAQGDELVTQAVDVKGIKVLVAMLEGADTKTLRDTMDKLKDKLKSAVIVLAA 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT + + + A +L A + GG GGG+P MA +GG K A+ Sbjct: 808 VEGD-KVQIAAGVTSNSVGKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTEPAKLPAAL 865 Query: 890 AGVASFL 896 A V +++ Sbjct: 866 ASVMAWV 872 >gi|325130665|gb|EGC53406.1| alanyl-tRNA synthetase [Neisseria meningitidis OX99.30304] Length = 874 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|237799115|ref|ZP_04587576.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021969|gb|EGI02026.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 874 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 384/893 (43%), Positives = 526/893 (58%), Gaps = 55/893 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G N + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--NNENQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLAELK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 418 -LDEEGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G V G++ V+ D TPFYAE+GGQ+GD+ Sbjct: 465 -----------------SATVVALYKEGLSVTHLNEGEEGVVILDSTPFYAESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++D K F+HH +V G L + + + R ++NHSATH Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLNVGAQVETQVADEVRDATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PV+T Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNTEIRKNTPVMT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E A GA AL G KY D VRV+S+ GG S LCGG H TG+I L IV Sbjct: 627 EETDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHAKRTGDISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R L+ Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAAQDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 L + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 853 >gi|253702326|ref|YP_003023515.1| alanyl-tRNA synthetase [Geobacter sp. M21] gi|251777176|gb|ACT19757.1| alanyl-tRNA synthetase [Geobacter sp. M21] Length = 875 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 389/906 (42%), Positives = 539/906 (59%), Gaps = 43/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F FFQK GH L+ SS+LIP NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MTGKEIRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKREYLRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLS 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA +W G+ ++I R DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 KDRLYVTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWN VFMQF + LPK S+DTGMGLER++ V+Q Sbjct: 181 GTGCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLAPLPKPSVDTGMGLERISAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 T+NYD DL + +I+ E+V+G KY + V+ RVI DH R+ +FLI DG+LP+NEGR Sbjct: 241 VTSNYDTDLLQGIIRHIEKVSGKKYRDDERDDVSMRVIADHARAVTFLICDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA +A++LG EP++ ++ A+ M AYPEL++ + +++ + +E+ER Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLFRVVDAVNMMMSDAYPELLEREQYVKKVILAEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRGL +L+ + L +++++G++ FKLYDT G P+D+ DI+ + G +D Sbjct: 361 FIETLDRGLAILNEETAALRAKGEKVISGEIIFKLYDTFGFPVDLTADIVESEGFT-LDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR +AR + G G I+ L T F+GY Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYSE------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + AIV+ G +VEEA +G++VE+V TPFY E+GGQ GDTG Sbjct: 467 ----------QTAFSTISAIVKGGTLVEEAGAGEEVEIVTAATPFYGESGGQAGDTGTIS 516 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +++T + + VH V G +RT + L I +R + NH+ATHLL Sbjct: 517 TGSGHVEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVAHRAATARNHTATHLLQA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS +TPD LRFD TH P+T E++ +E VN I N PV R M Sbjct: 577 ALREVLGEHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSPVEAREMP 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 DA+A+GA AL G KY D V G SS LCGGTHV GEI I+SE+ Sbjct: 637 ATDALAAGATALFGEKYGDVV-----RVVKVGEVSSELCGGTHVHGAGEIGFFKIISEAG 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA TG A + + G +++ + +A+ LK G V+ +VE++ R+LQ Sbjct: 692 IAAGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELE 751 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +LN + + V +S + D+K L+ + D L+++I SGII+L G Sbjct: 752 TLQARLNASKSADLIQQVREQNGVKILSVKVEG-DAKGLRELSDTLKQRIGSGIIVL-GT 809 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S +A++L+ VT DL R+ A D+ + A ++ GG GGG+P +AQ+GG +A+ Sbjct: 810 SDAARANLLVAVTADLAGRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALE 868 Query: 891 GVASFL 896 V + Sbjct: 869 AVYQIV 874 >gi|313902388|ref|ZP_07835791.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965] gi|313467319|gb|EFR62830.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965] Length = 905 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 370/910 (40%), Positives = 547/910 (60%), Gaps = 44/910 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+++GH ++PSSSL+P +DPTL+FTN+GMV FK++FTG+EK Y+ Sbjct: 16 MPAAEIRERFLRFFERHGHTIVPSSSLVPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK AI AW LT+E L Sbjct: 76 TTAQKCMRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKREAIHFAWTFLTEELGLP 135 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ T++ +D+EAF LW++++G+ A++I+R+ DNFW+M +TGPCGPCSEI +D+GE Sbjct: 136 RERLWATIFRDDDEAFGLWQEVTGIPAERIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGE 195 Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + + +R++EIWNLVFMQF + LP+ SIDTGMGLER+A+V+Q Sbjct: 196 EFRCDAEVCGIGACDCDRWLEIWNLVFMQFNRDESGRLEPLPRPSIDTGMGLERIASVMQ 255 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGR 297 +N+D DLF+ L++A E +TG Y+G RVI DH R+ +FLIADG+LP+NEGR Sbjct: 256 GVGSNFDTDLFRPLLRAVEDLTGRPYDGGEAGFPFRVIADHARACTFLIADGVLPSNEGR 315 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 G+VLRRI+RRA+ + R+LG EP + L+ + MG AYPE+ Q + +R E+ER Sbjct: 316 GHVLRRILRRAVRFGRILGLEEPFLYRLVDTVGEVMGDAYPEVRQRADYVRRVIRGEEER 375 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD+G+ +L V+ + D +++G+ AF LYDT+G PLD+ +D GL +D Sbjct: 376 FFRTLDQGMAILAEVIERARQRGDGLIHGEEAFVLYDTYGFPLDLTEDAAEEAGLR-VDR 434 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A+ QR RARA AT+F GY+ L Sbjct: 435 EGFERAMAVQRQRARAAREVEEGWDPGSPLARALADEPATEFTGYERLED---------- 484 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V+ +V++ E + A +G++V V+ D+TPFYAE GGQ+GDTG Sbjct: 485 -------------EGTVRLLVRRDEPADRADAGEEVGVILDRTPFYAERGGQVGDTGWLE 531 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 RL++ D Q G +H A V G ++ + +D R + NH+ATHLLH Sbjct: 532 TPRARLEVLDTQPLPGGRILHKARVVEGAVQVGDRVRARVDAARRAAIMRNHTATHLLHA 591 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS + PD LRFD TH + T+ +L++IED +N I + +PV + Sbjct: 592 ALKRVLGDHVNQAGSLVAPDRLRFDFTHFEAPTAGQLRAIEDEINQQILRGIPVRWYWTS 651 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A+ +GA AL G KY + VRVV + G +S LCGGTHV ST +I L +E S Sbjct: 652 LEEALEAGALALFGEKYGNEVRVVQI-----GDYSLELCGGTHVVSTSDIGLFKFTAEGS 706 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RR+EA+TG + +L Q+ L LA L+V ++ R+E + E +R+L+ Sbjct: 707 VAAGVRRVEAVTGWGSLEYLRRQEAVLDRLAGTLRVPVDDLPARLEALVESHRELERQLR 766 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + +L + + ++A V ++ + D++ L+ D L+++ ++L G Sbjct: 767 QLRSRLARQAADGLLEAAPQLAGVRVIAGELPVDDAEVLRETADYLRQRAGEAAVLL-GA 825 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +A ++ VT +R +A L A+ LGGGG GGRP +AQ+GG + + +A+ Sbjct: 826 RAGGRALLVAAVTPGAQERGLHAGRLVGEVARRLGGGG-GGRPDLAQAGGRDPGRLPEAL 884 Query: 890 AGVAS-FLKK 898 ++++ Sbjct: 885 EQGRRLWMEQ 894 >gi|222110972|ref|YP_002553236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY] gi|221730416|gb|ACM33236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY] Length = 874 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 366/892 (41%), Positives = 513/892 (57%), Gaps = 56/892 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 67 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG P E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + TG + +VI DH+R+++FL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSD--LTNPSLKVIADHIRATAFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP++ + + I + LR E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G + L GDVAFKL+DT+G PLD+ D+ RG +D Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERG-VNVD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E Q+S ARA K+ +L+ A QF GY+ L Sbjct: 422 EAGFATAMEHQKSTARAAGKF-------KMDRALEYTGAANQFTGYEQL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ + A+ G +GQ VV D+TPFYAE+GGQ+GD G Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D QK ++ HH +E G L ++ +D Q R NHS THL+H Sbjct: 512 GAGSACFSVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+A+++ IE VN + N R+M Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+E Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVRRTGDIGLFKVVAEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG+ A ++L + + A+ LK + R+ ++ + L+ Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + + ++ + D+K L+ MD L+ K+++ I+L Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + K + VT D + R A DL A + GG GGG+P MA +GG N Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855 >gi|121594335|ref|YP_986231.1| alanyl-tRNA synthetase [Acidovorax sp. JS42] gi|205829967|sp|A1W7D0|SYA_ACISJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120606415|gb|ABM42155.1| alanyl-tRNA synthetase [Acidovorax sp. JS42] Length = 874 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 366/892 (41%), Positives = 513/892 (57%), Gaps = 56/892 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 67 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG P E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + TG + +VI DH+R+++FL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSD--LTNPSLKVIADHIRATAFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP++ + + I + LR E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G + L GDVAFKL+DT+G PLD+ D+ RG +D Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERG-VNVD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E Q+S ARA K+ +L+ A QF GY+ L Sbjct: 422 EAGFATAMEHQKSTARAAGKF-------KMDRALEYTGAANQFTGYEQL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ + A+ G +GQ VV D+TPFYAE+GGQ+GD G Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D QK ++ HH +E G L ++ +D Q R NHS THL+H Sbjct: 512 GAGSACFTVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+A+++ IE VN + N R+M Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+E Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVRRTGDIGLFKVVAEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG+ A ++L + + A+ LK + R+ ++ + L+ Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + + ++ + D+K L+ MD L+ K+++ I+L Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + K + VT D + R A DL A + GG GGG+P MA +GG N Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855 >gi|326317055|ref|YP_004234727.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373891|gb|ADX46160.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 876 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 376/909 (41%), Positives = 534/909 (58%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR +FL+FF GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 9 SVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L + Sbjct: 69 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYGLPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 129 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G IPGG PGS E+G+R+IEIWN VFMQF+ LP +DTGMGLER+A Sbjct: 189 FYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LIQA+ + TG N + +VI DH+R+++FL++DG++P+N Sbjct: 249 AILQHVHSNYEIDLFAALIQAAGRETGTADLAN--PSLKVIADHIRATAFLVSDGVIPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E L++E Sbjct: 307 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVKDLVQQMGDAYPKLREQEQRITEVLKAE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 367 EERFFETLANGMDILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGVT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A++ Q+++ARA K+ +L+ A +F GYD L Sbjct: 424 EDGFNAAMDRQKAQARAAGKF-------KMDKALEYAGEANRFSGYDGL----------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ + AI G + +GQ VV D TPFYAE+GGQ+GD G Sbjct: 466 ------------AESAKIVAIYVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGVI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R + D K ++ HH +E G LR ++ +D R NHS TH++H Sbjct: 514 HAGGARFAVDDTLKIRADVYGHHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIMH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + + RFD H+ P+T A+++ IE VN+ I N P R+M Sbjct: 574 KALREVLGSHVQQKGSLVNAERTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARVM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV+ TG+I L +V ES Sbjct: 634 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVARTGDIGLFKVVGES 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG A ++L ++ + A L+ + GR+ + ++ + L+ Sbjct: 688 GVAAGVRRIEAVTGAGALAYLQQLEDTVAKAAGALRAPASELAGRIGQALDQVKALEREV 747 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + + ++ + D+K L+ MD L+ K++S I+L Sbjct: 748 AALKGKLASSQGDELVGQAVDVKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLAA 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + VT D++ + A +L A + GG GGG+P MA +GG + A+ Sbjct: 808 VD-GAKVQIAAGVTPDVMAKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTDAAALPAAL 865 Query: 890 AGVASFLKK 898 A VA ++ + Sbjct: 866 ASVAGWVGE 874 >gi|308389728|gb|ADO32048.1| alanyl-tRNA synthetase [Neisseria meningitidis alpha710] Length = 885 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 578 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 812 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 869 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 870 PAVLDSVKDWV 880 >gi|325144845|gb|EGC67133.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240013] Length = 874 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 518/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ D+ G Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADMARELG-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTTESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|302037043|ref|YP_003797365.1| alanyl-tRNA synthetase [Candidatus Nitrospira defluvii] gi|300605107|emb|CBK41440.1| Alanyl-tRNA synthetase [Candidatus Nitrospira defluvii] Length = 876 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 387/903 (42%), Positives = 543/903 (60%), Gaps = 41/903 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ +R F+++F++ GH +PS+ LIP DPTL+FTN+GM FK +F G+E Y Sbjct: 4 SVNDLRRAFIQYFEQQGHRAVPSAPLIPQADPTLLFTNAGMNQFKRVFLGEETRAYNRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 TVQKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ W+ LT L + Sbjct: 64 TVQKCLRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKEEAIRFGWEFLTSVVGLSK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R++IT++ ED+EA +LW+K G+S +I+R DNFW MA+TGPCGPCSE+ FDQG Sbjct: 124 DRMWITIFREDDEADRLWQK-IGVSPSRIVRCGEKDNFWQMADTGPCGPCSELHFDQGPS 182 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 +PG + EG+R IEIWNLVFMQF + + LPK SIDTGMGLER+ V Q + + Sbjct: 183 VPGDA-TPNGEGDRVIEIWNLVFMQFNRDSAGTLNPLPKPSIDTGMGLERLTAVAQGRLS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DLF L+ A G +Y + RVI DHLR+ +FL+ADG+LP+NEGRGYV Sbjct: 242 NYDSDLFAPLLAAIGTRAGAQYGAVEQADRSMRVIADHLRAITFLMADGVLPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + RLLG TEP + L + +MG AY EL A + E R E+ERF Sbjct: 302 LRRILRRAARHGRLLGITEPFLHELTATVVEQMGEAYHELRPAAGTVAEATRGEEERFIA 361 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD+GL +L+ +L+ + +L+G FKLYDT+G P+D++ + + +D F Sbjct: 362 TLDQGLPILNDMLTKVRASGQNMLSGTEIFKLYDTYGFPMDLIAEACREQD-IRLDETGF 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+EEQR+RAR G S T + + G T F+GYD L Sbjct: 421 EAAIEEQRTRARKTG-GFESETARPALSEVAARVGTTAFVGYDHLNS------------- 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +V+A+++ +V+EA G ++EVV D TPFYAE GGQ GD G G Sbjct: 467 ----------EGVVQALLKGDRLVKEAREGDEIEVVLDVTPFYAEGGGQAGDQGLLTGPD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R++I + + + VH +V G +R L L+++ + R+ + NH+ATHL+H AL Sbjct: 517 GRVEIRETTRPVPTLIVHKGVVTSGSIREGERLQLSVNRRTRQDAARNHTATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + P+ LRFD H + + S ++ IE VN+ + Q+ PV T +M ++ Sbjct: 577 DLLGPHVKQYGSLVAPNRLRFDFAHFRSLASRDIDEIESIVNEQVRQDQPVQTDVMGVQE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+A GA A G KY D+VRVV ++ S LCGGTH TGEI L IVSES + A Sbjct: 637 AVAGGALAFFGDKYGDQVRVVHIDT-----FSKELCGGTHCRRTGEIGLFRIVSESGVAA 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIE +TG A L + ++ L+ LKV+ G VV R ++ E+ ++ + A+ K Sbjct: 692 GVRRIECLTGSGALDSLKRLEADVRELSDLLKVAPGEVVSRTRKLSEQLKEKERELAEVK 751 Query: 779 LQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L++ D +I V + +D ++++ D L+ K++SG++ L G + + K Sbjct: 752 LKMASTSSGDSQAREIKGVQVHAQRTDGLDVNGMRALADQLRDKLRSGVVAL-GAANDGK 810 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+L+VVT+DL+ R A DL + A + GG GGGRP MAQ+GG N A+ V Sbjct: 811 VSLLVVVTKDLVGRLKAGDLIKEMATEV-GGTGGGRPEMAQAGGKNPEGLGTALEKVFGL 869 Query: 896 LKK 898 ++K Sbjct: 870 VQK 872 >gi|325134725|gb|EGC57364.1| alanyl-tRNA synthetase [Neisseria meningitidis M13399] gi|325205670|gb|ADZ01123.1| alanyl-tRNA synthetase [Neisseria meningitidis M04-240196] Length = 874 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 518/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ D+ G Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADMARELG-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|84517390|ref|ZP_01004743.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53] gi|84508754|gb|EAQ05218.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53] Length = 884 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 444/911 (48%), Positives = 583/911 (63%), Gaps = 42/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+K GH ++PSS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MTSLADIRSTFLNYFEKQGHRVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT++F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTRDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF LWKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFDLWKK-IGVPEDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D+ + LI+AS T +G +HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 240 KHDNYDTDVMRALIEASANATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+ AL +MG+AYPEL Q + LIEETL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVSALVQQMGAAYPELGQGQRLIEETLMNEEIRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L +D L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELAGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGR-AVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+++ARA G G IWF + + G T F+GYD L Sbjct: 419 AAMAAQKAKARAAWSGTGEAADSAIWFDVADLAGPTDFLGYDSLD--------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V +KA+V G +V++A G V++V +QT FYAE+GGQ+GD G D Sbjct: 464 --------VEGQIKALVADGAMVQQA--GGAVQIVLNQTSFYAESGGQVGDAGILQTDTG 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 QITD KK G+F+H A V G + L +D R + NHSATHLL+ AL Sbjct: 514 TAQITDT-KKVAGVFIHFATVTNGTIAVGQGAALRVDAGRRAAVQANHSATHLLNEALRE 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG H++Q GS PD LRFD +H+KP+++ EL IE +VN +I QN V TRIM +DA Sbjct: 573 TLGDHIAQRGSLNAPDRLRFDFSHTKPVSADELAQIERDVNALIRQNTRVETRIMAPDDA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ +D G +S LCGGTHV GEI + Sbjct: 633 RALGAQALFGEKYGDEVRVVSMGRKDGSGKGAAGNTYSLELCGGTHVRQLGEIGAFVALG 692 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +++ AG+RRIEA+TGQ A +L QD++L +A+ LK +V RV+ + +E R L Sbjct: 693 DAASSAGVRRIEALTGQAALDYLRAQDQRLADVAAALKAPASDVADRVKALMDERRTLAN 752 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ + +L + + ++ + F + ++S V K+L S++D ++ + SG+++L Sbjct: 753 EVAQLRRELAMGGGAQGASPALQVNGIAFHAQVLSGVTGKDLPSLIDQIKTDLGSGVVLL 812 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + + KA++ + VT DL R +AVD+ R LGG GGGGRP MAQ GG + A+ Sbjct: 813 IADTGD-KAAIAVGVTADLTTRVSAVDILRAVTPELGGKGGGGRPDMAQGGGASTQNAEA 871 Query: 888 AIAGVASFLKK 898 AI S L+K Sbjct: 872 AITQAKSILEK 882 >gi|294083659|ref|YP_003550416.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663231|gb|ADE38332.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum IMCC1322] Length = 879 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 436/892 (48%), Positives = 582/892 (65%), Gaps = 35/892 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+ IR TFLE+F+ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MASVNDIRATFLEYFKDNGHQVVDSSPLVPQNDPTLMFTNAGMVQFKNLFTGLETRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+E+ L Sbjct: 61 AATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +L +TVY ED+EA LWKKI+GL+ D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DASKLLVTVYHEDDEAADLWKKIAGLNDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG P E+G+R+IEIWNLVFMQFEQ ER LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAN-ERINLPKPSIDTGMGLERIAAVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDL + LIQAS + + +G++ V+HRV+ DHLR+SSFLIADG+LP+NEGRGY Sbjct: 240 KHDNYDIDLMRALIQASAEAANVAADGDHNVSHRVVADHLRASSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +G +P M L+PAL EMG YPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHLHQMGCQDPTMWRLVPALVAEMGGHYPELGRAQALITETLKLEEGRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL +L+ ++ +L+G AFKLYDT+G PLD+ QD + +D+ FN Sbjct: 360 ETLGRGLRILNDEVAGKAAGGVLDGKTAFKLYDTYGFPLDLTQDFMRGYEW-DVDLDGFN 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ AR G G TE IW L ++ GAT+F+GY Sbjct: 419 SAMEAQKAAARKAWSGSGDAATETIWLDLGQQLGATEFLGY------------------- 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T+ V A+V+ G + A +G+ V+++ +QTPFYAE+GGQ+GDTG Sbjct: 460 ----STDTAEGQVTALVRDGAAIASAAAGEDVQIITNQTPFYAESGGQVGDTGVISWADG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D K G+FVH A + +G L + L ID R +L NHSATHLLH AL Sbjct: 516 AADVADTFKTPMGMFVHRATITKGSLDVGNDVRLDIDVARRLRLRANHSATHLLHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + PD LRFD +H K +T EL ++ VN + N V TRIM E A Sbjct: 576 VLGEHVAQKGSMVGPDRLRFDFSHPKAMTEDELARVQAIVNSRVQMNSDVSTRIMTPEAA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHVSSTGEIMLLYIVSESS 715 I GA AL G KY D VRVV + E S LCGGTHV+ TG+I +L ++ ES+ Sbjct: 636 IELGALALFGEKYGDEVRVVQMGGETDIKGRSAWSVELCGGTHVNRTGDISILKVIGESA 695 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + G+RRIEA+T A + ++ L A LK++ + RV ++ E+ ++ + Sbjct: 696 VAGGVRRIEAVTQAGAVEWIEHRERILSHTAELLKIAPEQLADRVAKLLEDNKRAERDIT 755 Query: 776 KRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + +L + +I VNF+ ++ + ++ELKS+ D +++ +++ +I LV Sbjct: 756 MMRRKLAAGGDAGGAGSEQINGVNFVGRLMEDTPARELKSMADEMKQGLENAVICLVATD 815 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 KAS+++ VT+DL+D NAVDL R+ + LGGGGGGGRP MAQ+GGPN + Sbjct: 816 S-GKASIVVAVTDDLVDAKNAVDLVRVGSAALGGGGGGGRPDMAQAGGPNAD 866 >gi|316983845|gb|EFV62825.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76] gi|325199806|gb|ADY95261.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76] Length = 874 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RIAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALVK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|71279113|ref|YP_267790.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H] gi|83305842|sp|Q487H5|SYA_COLP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71144853|gb|AAZ25326.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H] Length = 876 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 387/913 (42%), Positives = 535/913 (58%), Gaps = 58/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R FL+FF H+++ SSSL+P ND TL+FTN+GMVPFK++F G E Y Sbjct: 3 KSTAEVRQAFLDFFATKQHQIVKSSSLVPGNDATLLFTNAGMVPFKDVFLGAETRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT E L Sbjct: 63 TSAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKNDAISYAWEFLTGELGLA 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 + +L +TVY DEEAF W+ G+ DKIIRI DNFWSM +TGPCGPCS Sbjct: 123 KEKLLVTVYATDEEAFSYWRDEVGVPEDKIIRIGDKSANKKYESDNFWSMGDTGPCGPCS 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN+VFMQF +Q+ LP SIDTGMGLER Sbjct: 183 EIFYDHGEDIFGGPPGSPDEDGDRFIEIWNIVFMQFNRQSDGRMDPLPNPSIDTGMGLER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+ + + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQNVHSNYEIDIFQALIKDTAALLDCSD--LEHKSLRVIGDHIRSCSFLIVDGVVP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + L T L+ +L +MG AYPEL Q + +IE+ LR Sbjct: 301 SNEGRGYVLRRIIRRAIRHGHKLEATGHFFHKLVASLIAQMGEAYPELAQQQAIIEKLLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+FG+TLDRG++LL+ +L++L +I+ GD FKLYDT+G P D+ DI R L Sbjct: 361 IEEEQFGRTLDRGMILLEDILANLS-GDIIKGDDVFKLYDTYGFPADLTADIARERNLK- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F+ A+++QR RA+ S + + T F GYD Sbjct: 419 IDKDGFDVAMKQQRERAQQASQFG------TDYNQQLKSDQNTAFKGYDN---------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + S+ V + Q + V + SG++ V+ D TPFYAE+GGQ+GD Sbjct: 463 -------------DSYSATVVELFNSQDQDPVSQLNSGEQGIVILDHTPFYAESGGQVGD 509 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G DG ++TD K H + + I+ + R + NH+AT Sbjct: 510 SGLLHLDGGVFEVTDTIKLGNAF--AHRGTAHTDVGLNRRVKAEINVERRAAIVKNHTAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS D LRFD +H + +T+ EL +E VN+ I +N Sbjct: 568 HLLHEALRKVLGEHVTQKGSLCDSDKLRFDFSHFEGVTAQELHDVEQMVNNEIRRNHAKQ 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T M E+A A GA AL G KY+D VRVV++ G S LCGG HV+ TG+I L I Sbjct: 628 TESMYIEEAKAKGAMALFGEKYDDEVRVVTL-----GDFSIELCGGVHVNRTGDIGFLKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSES I AG+RRIEA+TG A + Q L ++A+ +K N +VE + ++L Sbjct: 683 VSESGIAAGVRRIEAVTGTGALDFINQQTASLTTIAALVKSDVTNASSKVELLISRSKQL 742 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K +L + S +I V + + V+SK L+ ++D L+ K+QSG+I Sbjct: 743 EKEIGQLKQELAAQAGSDLVNNTIEINGVKVLIADLGSVESKALRGMVDELKNKMQSGVI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ML + K ++ VT+DL+ R A DL + A+ + GG GGGRP MAQ+GG Sbjct: 803 MLA-TANGPKVGLIAGVTKDLVGRVKAGDLVNMVAQQV-GGKGGGRPDMAQAGGSQPENI 860 Query: 886 DQAIAGVASFLKK 898 A+ V+++L + Sbjct: 861 TSALESVSAWLTE 873 >gi|15677445|ref|NP_274601.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58] gi|20532266|sp|Q9JYG6|SYA_NEIMB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|7226845|gb|AAF41948.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58] Length = 874 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RIAAVMQHVHSNYEIDLFQDLLKAVARETG-APFRMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALVK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|332112510|gb|EGJ12303.1| alanyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2] Length = 877 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 381/915 (41%), Positives = 530/915 (57%), Gaps = 58/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+TFL+FF+ GH ++PSS ++P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKASEIRSTFLKFFESKGHTIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L Sbjct: 61 TTSQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWELLTEHFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L+ TVY ED+EA+ +W K+ GL A++I+RI N DNFW M +TGPCGPCSE Sbjct: 121 KDKLWATVYAEDDEAYDIWLKVIGLPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E +G+RYIEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPDVAGGPPGSPEQDGDRYIEIWNNVFMQFNRTEDGTMHRLPKPSVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGI 290 A VLQ +NY+IDLF +L+ A+ + + +VI DH+R+ +F +ADGI Sbjct: 241 AAVLQHVHSNYEIDLFVNLLAAARSAVEAAGGQDVDAESPSLKVIADHIRACAFTVADGI 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI RRA+ + LG +P L+ AL EMG AYPEL + KL I E Sbjct: 301 IPGNEGRGYVLRRIARRAIRHGYKLGARKPFFHTLVEALAVEMGEAYPELRRDKLRITEV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+ERF +T+ G+ +L+G L+ +++G+ AFKL+DT G PLD+ D+ RG+ Sbjct: 361 LKAEEERFFQTIAHGMEILEGALAS--GATVIDGETAFKLHDTFGFPLDLTADVCRERGV 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+ A++ QR +AR+ + + L AT F GY+ L Sbjct: 419 T-VDGAGFDAAMQRQREQARSKAKFKMAQG-------LAYDGEATTFHGYEHLVCEH--- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V AI G V +A +G V VV D TPFYAE+GGQ+GD Sbjct: 468 -------------------AKVSAIYVDGTPVTKAQAGDDVVVVLDHTPFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G RL + D K + H A + G + +LV +D + R + NHSAT Sbjct: 509 RGELRNGRARLVVEDTVKIQAQVHGHQARIVEGEIEIGDTLVARVDAELRAKTIRNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG HV Q GS +TP+ RFD H+ P+T+A++ +E VN I N Sbjct: 569 HLMHKALREVLGGHVQQKGSLVTPERTRFDFAHNAPVTAAQIAQVEALVNAEILANAATQ 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 R M ++A GA L G KY + VRV+ + S LCGGTHV TG+I L I Sbjct: 629 ARTMAIDEAQKLGAMMLFGEKYGETVRVLDIGG------SRELCGGTHVQRTGDIGLFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +E + AGIRR+EA+TG A ++L + L +A+ LKV+ V RV+ + E+ R L Sbjct: 683 AAEGGVAAGIRRVEAVTGDNALAYLQQLEGALGGVAATLKVTPAEVPARVDAVLEQLRAL 742 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 K +L S + + ++ ++ D+K L+ MD L+ K++S I Sbjct: 743 DKEITALKGRLASAQGDELLASAVDVKGIKVLAATLAGADAKALRETMDKLKDKLKSAAI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +L + K + VT DL+ + A +L A +GG G GG+P +A +GG + Sbjct: 803 VLAAVD-GAKVQLAAGVTGDLVAGGKLKAGELVNFVAGQVGGKG-GGKPDLAMAGGTDAA 860 Query: 884 KADQAIAGVASFLKK 898 QA+A VA ++ + Sbjct: 861 ALPQALASVAGWVGE 875 >gi|121635253|ref|YP_975498.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18] gi|205830172|sp|A1KV20|SYA_NEIMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120866959|emb|CAM10719.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18] gi|325138605|gb|EGC61164.1| alanyl-tRNA synthetase [Neisseria meningitidis ES14902] gi|325142798|gb|EGC65170.1| alanyl-tRNA synthetase [Neisseria meningitidis 961-5945] gi|325198706|gb|ADY94162.1| alanyl-tRNA synthetase [Neisseria meningitidis G2136] Length = 874 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GSKKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 859 PAVLDSVKDWV 869 >gi|262195176|ref|YP_003266385.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365] gi|262078523|gb|ACY14492.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365] Length = 890 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 377/918 (41%), Positives = 538/918 (58%), Gaps = 54/918 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R++FL+FF GHE + S+SL+P DPTL+FTN+GMVPFK++FTG + Sbjct: 1 MKAAQVRSSFLDFFAARGHERVHSASLVPVGDPTLLFTNAGMVPFKDVFTGHQTRAIPRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ + +D Sbjct: 61 TSSQKCVRAGGKHNDLDQVGKTARHHTFFEMLGNFSFGDYFKKDAIAWAWELLTEVYGID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RL ITV+ D+EA +W +++G+ +++II + ++NFW M ETGP GPCS Sbjct: 121 KERLVITVFAGDSELGVGADDEARAIWGEVTGMPSERIIGLGKSENFWMMGETGPMGPCS 180 Query: 174 EIFFDQGECIPGGLPGSSEEGE---RYIEIWNLVFMQFE-QQNKQERFILPKMSIDTGMG 229 EI + G P LPG+ + ++EIWNLVFMQ+E ++ LP SIDTG G Sbjct: 181 EIHY-FGAGKPDALPGTDPDAPVWSGWLEIWNLVFMQYERREPGGALHKLPAPSIDTGAG 239 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 LER+ +VLQ ++NYD DLF+ L+ ++ ++ G +Y +G+ + RVI DH R+++FL+A Sbjct: 240 LERVTSVLQGVSSNYDTDLFQPLLHSAAELCGKRYGEDGDADTSMRVIADHARATAFLVA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P + YVLRRI RRA+ + +LLG EP M + + EM AYPEL + +I Sbjct: 300 DGVFPDKTDKEYVLRRIFRRAVRHGKLLGIEEPFMHRMCARVVEEMKDAYPELAERATVI 359 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E E++RF TLDRGL LL+ + K ++GD F+LYDT+G P D+ + I Sbjct: 360 HEITLEEEKRFRATLDRGLNLLEEEFGRMQAAKSSTVSGDKVFQLYDTYGFPSDLTEIIA 419 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G GID F + LE+ R R++A +++ +L + GAT F+GY+ Sbjct: 420 DEHGY-GIDHEGFREELEQARERSKAAHSTGVGEG--EVFKTLAGELGATSFLGYE---- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V A+V GE VE A +G +V DQTPFYAE+G Sbjct: 473 -----------------GEGLSGSGQVMALVVDGERVERAEAGAQVAFACDQTPFYAESG 515 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GD G A + R++I D +K + FVH V G + L +D + R ++ Sbjct: 516 GQIGDCGEARSEAGARVRIDDTRKPSGDTFVHIGEVLEGAIALGDQLGFEVDGERRARIR 575 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL LG HV+Q GS + PD LRFD H P++ + + +ED VN I Sbjct: 576 ANHSATHLLHLALKKTLGDHVAQKGSSVGPDRLRFDFAHFSPMSDEQTQQVEDWVNAEIR 635 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N VT +M+ +A GA A+ G KY D+VRVV + G S CGGTHV G+ Sbjct: 636 KNRDSVTDVMSLSEAKERGAVAMFGEKYGDKVRVVGI-----GSESLEFCGGTHVHRAGD 690 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSESS+ G+RRIEA+TG A ++ + +L ++ LKV+ V GRV+++ Sbjct: 691 IGLFKIVSESSVAQGVRRIEAVTGAGALEYVRRVEGELSAVGGRLKVAPLEVAGRVDKLQ 750 Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R + A+ K +L +IA V ++ D+K L++ D L+ + Sbjct: 751 EELRAREREVAELKAKLAAGGSRDLMSEVEEIAGVKVLAVATEVDDAKTLRTTGDTLRDR 810 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + SG+++L G+ E K ++L +V++DL R +A L + A+ L GG GGGRP MAQ GG Sbjct: 811 LGSGVLLLCGV-GEDKVALLAMVSKDLTKRVHAGKLLQAVAETL-GGRGGGRPDMAQGGG 868 Query: 880 PNGNKADQAIAGVASFLK 897 + ++ A+ SFL Sbjct: 869 KDPSQVPAALERARSFLN 886 >gi|269214760|ref|ZP_05987102.2| alanine--tRNA ligase [Neisseria lactamica ATCC 23970] gi|269209090|gb|EEZ75545.1| alanine--tRNA ligase [Neisseria lactamica ATCC 23970] Length = 885 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 369/912 (40%), Positives = 520/912 (57%), Gaps = 58/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF++L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQNLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 PANEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 311 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L + T+F GY Sbjct: 428 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 578 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 812 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869 Query: 886 DQAIAGVASFLK 897 + +A ++K Sbjct: 870 PEMLASAEGWVK 881 >gi|121608636|ref|YP_996443.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2] gi|205830282|sp|A1WIG8|SYA_VEREI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|121553276|gb|ABM57425.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2] Length = 872 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 369/907 (40%), Positives = 522/907 (57%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR +FL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 5 SVADIRKSFLDFFVAKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYSRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK ++Q AW+LLT+ + L Sbjct: 65 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLQWAWELLTEVYRLPA 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY +D+EA+ +W + GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 125 ERLLATVYQDDDEAYDIWTREIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 184 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G E+G+R+IEIWN VFMQF LP +DTGMGLER+A Sbjct: 185 FYDHGPGIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAADGSVTPLPAPCVDTGMGLERLA 244 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ+ +NY+IDLF+ LI A+ + TG K G+ + RVI DH+R+S+FL++DG+LP + Sbjct: 245 AVLQQVHSNYEIDLFEQLIAAASRETGEKDLGHK--SLRVIADHIRASAFLVSDGVLPGS 302 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRIMRRA+ + LG P + L+ L MG+AYP L + I + L++E Sbjct: 303 EGRGYVQRRIMRRAIRHGYQLGQRAPFLHRLVADLVRLMGAAYPSLRAQQQRIADILKAE 362 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ RG +D Sbjct: 363 EERFFETLAHGMEILDAALD--GGAKLLPGDVAFKLHDTYGFPLDLSADMCRERG-VAVD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F+ A+E Q+++ARA K+ +L+ GA++F GY+ L G Sbjct: 420 EAGFHLAMERQKTQARAAGKF-------KMERALEYTGGASRFTGYEDLAG--------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + AI G V +GQ +V D+TPFYAE+GGQ+GD G Sbjct: 464 --------------TAKITAIYAAGTSVAALKTGQHGVLVLDRTPFYAESGGQVGDQGLI 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K + HH +E G L ++ ++ R NHSATHL+H Sbjct: 510 SSGSARFAVDDTLKIKADVHGHHGRLEDGTLNVGDTVQARVNTALRAATMRNHSATHLMH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + + RFD H+ ++SAEL+ IE VN+ I N P R+M Sbjct: 570 QALRAVLGSHVQQKGSLVNAERTRFDFAHNAAVSSAELREIERRVNEEILANQPTQARVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +SGA L KY VRV+ + S LC GTHV TG+I L +V+E Sbjct: 630 DIEAARSSGAMMLFDEKYGAAVRVLDIGS------SRELCAGTHVQRTGDIGLFKVVAEG 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG A + L ++ + A L+ + GR+ + + R L+ Sbjct: 684 GVAAGVRRIEAVTGSHALAWLQQLEDTVNQAADTLRAPVAELNGRISQALDNARALEKEV 743 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L +I + ++ + D+K L++ MD L+ ++++ I+L Sbjct: 744 AALKSRLAASQGQELLARAVQIKGLAVLAATLPGADAKTLRATMDQLKDQLKTAAIVLAA 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT D + R A DL A+ + GG GGG+P MA +GG + A+ Sbjct: 804 VDGD-KVQLAAGVTADSVGRIQAGDLVNFVARQV-GGKGGGKPDMAMAGGTDAAGLPAAL 861 Query: 890 AGVASFL 896 A VA ++ Sbjct: 862 ASVAGWV 868 >gi|90416725|ref|ZP_01224655.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207] gi|90331478|gb|EAS46714.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207] Length = 864 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 374/901 (41%), Positives = 543/901 (60%), Gaps = 47/901 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL ++ H ++PSSSL+P NDPTL+FTN+GMV FK++F G EK Y Sbjct: 1 MKSADIRDAFLNYYASKQHSIVPSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRDYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L Sbjct: 61 VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEFLTEVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITV+ D+EA +W G+ +++ R+ DNFW M +TGPCGP +EIF+D GE Sbjct: 121 KERLWITVHISDDEAADIWVNEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSTEIFWDHGE 179 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGG PGS ++ +RYIEIWNLVFMQFE+ + + LPK SIDTGMGLER+A V+Q Sbjct: 180 DIPGGPPGSPDDDLDRYIEIWNLVFMQFERDSTGKMTPLPKPSIDTGMGLERVAAVMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NNYDIDLF+HLI+A+ ++ G+ N + +V+ DH+RS +FL+ DG++P+NEGRGYV Sbjct: 240 HNNYDIDLFQHLIKAAAKIIGVTDLAEN--SLKVVADHIRSCAFLVVDGVVPSNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + L+ +L MG AYPEL+ + I T++ E+E+F + Sbjct: 298 LRRIIRRALRHGHNLGASGSFFHKLVVSLGEVMGEAYPELLSMQQEIIVTIKKEEEQFAR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD+G+ +L+ L +L ++ L G++ F+LYDT G P D+ DI RG + +D+ + + Sbjct: 358 TLDKGMGVLEAALENLTAEQ-LPGELIFQLYDTFGFPTDLTNDIARERGYS-MDMEGYEE 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR+RAR+ S + G+T+F+GY+ L Sbjct: 416 CMEAQRARARSASQFG------LDYSESIRVEGSTEFVGYNSLEH--------------- 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S+ V A+ GE V A +V V+ TPFYAE+GGQ+GD+G + Sbjct: 455 --------SADVVALYSAGEEVSAAGMDAEVAVILGSTPFYAESGGQVGDSGYLQTASAK 506 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++TD +K E +H V G L ++ T+D R ++NHSATHLLH AL I Sbjct: 507 IEVTDCRKAGEH-HLHIGKVLSGELNVGDAVTATVDCSVRTATALNHSATHLLHSALQQI 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + LRFD +H + I++ +++ IE VN I +N PV T +M+ ++A+ Sbjct: 566 LGEHVNQKGSLVDSQRLRFDFSHGESISAQQIRDIEHRVNREILRNTPVQTDVMSMDEAV 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY VRV+S+ GG S LCGGTH + TG+I LL I +ESS+ AG+ Sbjct: 626 EKGAMALFGEKYGSEVRVLSM----GGDFSVELCGGTHANRTGDIGLLKISAESSVSAGV 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ + + +A+ L+ ++ +V + ++ E+ RKLQ K + Sbjct: 682 RRIEAVTGEAAIAYCDALQDTVSEMANVLRAARHSVADKARQVVEDNRKLQKEIDALKSK 741 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L +I + +S ++ D+K L+ V D ++ K+QSG+ ML + + K Sbjct: 742 LANASGNDLMAGLREINGFSVLSTVVEGADAKSLRGVADQVRSKLQSGVFMLAAVDGD-K 800 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 A+++ VT+DL D+ A DL + + G GGGR MAQ + A+ V + Sbjct: 801 AALVAGVTQDLTDKLKAGDLLKYVTAQV-DGKGGGRADMAQGAAGSTVNLAAALDSVYDW 859 Query: 896 L 896 + Sbjct: 860 V 860 >gi|262375452|ref|ZP_06068685.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145] gi|262309706|gb|EEY90836.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145] Length = 892 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 386/923 (41%), Positives = 516/923 (55%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT + Sbjct: 61 VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNEEWLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY TVY D+EAF +W K GL A +IIRI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD GE I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGEHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT------------GMKYEGNNIVNHRVIVDHL 279 R++ VLQ +NY+IDLF+HL++A+ ++ + +V+ DH Sbjct: 241 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGLNTTALEAEAAEKGTPVQYPASLKVVADHA 300 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS SFLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPE Sbjct: 301 RSCSFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLKPLIEVMGDAYPE 360 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + IE L E+E+F KTL++GL LL+G L+ L ++ G+V FKLYDT+G P D Sbjct: 361 LAAQQARIEAQLLKEEEQFAKTLEQGLKLLEGELAQLK-GSVIPGEVVFKLYDTYGFPTD 419 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + DI R L ID F + QR RAR +G + S+ + G TQF G Sbjct: 420 LTADIARERDLT-IDEAGFETEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDG 472 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD G + AI + GE V+E G + +V +QTP Sbjct: 473 YDATAG-----------------------EGQIIAIYKDGEQVDEVFEGDEALIVLNQTP 509 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE+GGQ+GDTG D ++ D +K FVH IV G L+ ++ T+ Sbjct: 510 FYAESGGQIGDTGIFKNDTGIFEVQDTKKSGG-AFVHQGIVTMGNLKVTQNVEATVKADI 568 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + NHSATHLLH AL ILGSHV Q GS + D LRFD + +P++ +L+ IE V Sbjct: 569 RAATARNHSATHLLHAALRQILGSHVQQKGSLVASDVLRFDFANDQPVSFEQLQEIERLV 628 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTH 698 N + N V T +++ E A A GA L G KY D VRV+S+ + S LCGG H Sbjct: 629 NAEVIANTAVSTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSVIEEKNFSIELCGGIH 688 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TG+I L I SE + AG+RRIEA+TG +A D + + LK + + Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAVEVAQKADRDINMINGLLKAQKDQTLE 748 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813 +VE + + LQ + +L IA + + +D+K L+++ Sbjct: 749 KVEALVDTASSLQKQIEQLNQKLASLQAGELLSQVQSIAGRATLITTVENMDAKALRNLH 808 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D ++ K+++ +I+L G+ + K S++ V +D A D+ + A L GG GGG+P Sbjct: 809 DGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLANEL-GGKGGGKPD 866 Query: 874 MAQSGGPNGNKADQAIAGVASFL 896 +AQ G P K +A + ++L Sbjct: 867 LAQGGAPLNEKFAPVMADLTAWL 889 >gi|77460496|ref|YP_350003.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] gi|123603611|sp|Q3K892|SYA_PSEPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|77384499|gb|ABA76012.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] Length = 874 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ AS + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RISAVLQHVHSNYEIDLFQSLLAASAKAIGCT--NDAQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLKILEQDLAELK-GDVVPGDVVFKLYDTYGFPMDLTADIARERSLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +E QR RAR+ S + SL + T+F GY G Sbjct: 418 -IDEAGFEREMEAQRVRARSASSFG------LDYNSLVKVDVDTEFTGYHATSG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ + G+ V+ GQ+ VV +QTPFYAE+GGQ+GD Sbjct: 465 -----------------SAKVVALYKDGQSVDVLSEGQEGVVVLNQTPFYAESGGQVGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH ++ G L + ++ R S+NHSATH Sbjct: 508 GYLQAGNSRFDVRDTTKTGG-AFLHHGVLASGSLIVGAPVETHVEADVRHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I ++K++ED VN I +N V T Sbjct: 567 LLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I+ Sbjct: 627 EETDIETAKQKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIGLLKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALE 742 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + S + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + +E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + D Sbjct: 803 LGSVHEE-KVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860 Query: 887 QAIAGVASFLKK 898 A+A F+++ Sbjct: 861 GALALTVPFVEQ 872 >gi|325140755|gb|EGC63269.1| alanyl-tRNA synthetase [Neisseria meningitidis CU385] Length = 881 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 68 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 188 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 248 RIAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 366 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L + L G++ FKLYDT+G P D+ DI R Sbjct: 367 KNEESRFAQTLETGMALLENALVK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 468 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 514 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 574 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 634 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 808 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 866 PAVLDSVKDWV 876 >gi|256830944|ref|YP_003159672.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] gi|256580120|gb|ACU91256.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] Length = 879 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 365/910 (40%), Positives = 535/910 (58%), Gaps = 43/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+FQ++GH + PSSSL+P +DPTL+FTN+GMV FK IF GQEK Y Sbjct: 1 MISAGEIRKRFLEYFQQHGHSVQPSSSLVPQDDPTLLFTNAGMVQFKKIFLGQEKRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+LAW+ +T E L Sbjct: 61 AATSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRLAWNFVTVELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L+++++ +D+EA +LW+K++ + ++I R+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 DKEKLFVSIFRDDDEAGELWQKVASVPGERIFRLGEKDNFWAMGDTGPCGPCSEIYVDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + G + +RY+EIWNLVFMQF + LPK SIDTGMGLER+ V Q Sbjct: 181 ADMACGPDCGIGKCDCDRYLEIWNLVFMQFNRSEDGTLTPLPKPSIDTGMGLERITAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 K +N+D DLF+ LIQA + G+ Y RVI DH RS +FL+ADG+LP+NEG Sbjct: 241 GKRSNFDTDLFQGLIQAMAKKAGVAYHQGEDSDTALRVIADHSRSIAFLLADGMLPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG+ EP + + +EMG +PEL+ ++ + +R E+E Sbjct: 301 RGYVLRRLIRRAYRFGKLLGFDEPFLCETTDQVVSEMGDTFPELVASREFMVRVVRQEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RFG+TLD+GL +L+ ++ L + + G+ AFKLYDT+G PLDI+ DI +G +D Sbjct: 361 RFGETLDKGLRILEDEMASLAAAGSKTITGETAFKLYDTYGFPLDIVNDIAEKQGF-LVD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + + Q+ +++ G G + +L ++FIGYD L + + Sbjct: 420 EAGFREHMSVQKKKSKQAWAGSGDKGLAGQFAALMGAGLESEFIGYDCLAATSRI----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V + +G+ VE SG +V +TPFY E+GGQ+GDTG Sbjct: 475 -----------------VALLDAEGQPVERLRSG-VGFMVTLKTPFYGESGGQMGDTGRV 516 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ D K A + VH + G + + + L ++ R + NHS THLLH Sbjct: 517 QAPTGSARVLDTLKPAPALIVHKIEIGGGEILADQEVELFVEEGERIATARNHSTTHLLH 576 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + P LRFD TH ++ EL+ +ED VN I + P+VT++M Sbjct: 577 AALRRVLGEHVKQAGSLVGPSRLRFDFTHISGLSPEELRQVEDEVNRAILADAPIVTQVM 636 Query: 655 NRE-DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A AL G KY VRVV + S LCGGTH++STG+ ++SE Sbjct: 637 SYDAAVQQKQAMALFGEKYEADVRVVEMAG-----ESVELCGGTHLASTGQAGSFALLSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + I AG+RRIEA+TG A H Q E+++++A+ LK + + ++ + ++ + L Sbjct: 692 AGIAAGVRRIEALTGWDALRHWQAQREEVRTVAATLKAAPHELGKKIIALQDQGKALAKE 751 Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + ++ E I+ + ++ + D L+++MD L+ K+ SGII L Sbjct: 752 LQTLQARVMSESGRDLASEAKDISGMKVLARKVDAPDMNALRNLMDDLRSKLSSGIIALA 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + KA +++ V++DL R+ A L + + + GG GGGRP +AQ+GG +A Sbjct: 812 A-EIDGKAMLVLAVSKDLHGRYTAPALIKEVSDEIKGG-GGGRPELAQAGGSEPEGISRA 869 Query: 889 IAGVASFLKK 898 +A + +FL K Sbjct: 870 LAKLEAFLSK 879 >gi|218885980|ref|YP_002435301.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756934|gb|ACL07833.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 879 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 386/907 (42%), Positives = 517/907 (57%), Gaps = 41/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEFFQ GHE++ SSSL+P +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRRRFLEFFQSQGHEIVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRGYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT++ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEDLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TV+ +D+EA LW + + A++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKERLYATVFRDDDEARDLWLAHTDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + +RY+EIWNLVFMQ++Q R LPK SIDTGMGLER+A V Q Sbjct: 181 EHMTCGPDCGIGKCDCDRYLEIWNLVFMQYDQAADGTRTALPKPSIDTGMGLERIAAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF+ +IQ + + G+ Y N+ RVI DH RS +F+I DGILP+NEG Sbjct: 241 GVYSNFDTDLFQAIIQYTCGIAGVSYRANDETDTALRVIADHSRSMAFMITDGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RL+G T + + MG YPEL + +R E+E Sbjct: 301 RGYVLRRLIRRAYRFGRLIGQTGTFLHKTALKVVEVMGDDYPELRGNADFMARVVREEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TLD+GL LL+ L L + GDVAFKLYDT+G PLDI+ DI RG +D Sbjct: 361 RFNRTLDKGLALLEEELESLRGAGSTRVAGDVAFKLYDTYGFPLDIVNDIAEKRGFT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + EQ+ RA+A G G + +L E+ ++FIGYD L G Sbjct: 420 EEGFRTLMAEQKERAKAAWKGSGESDIASRFHALLEEGLRSEFIGYDHLSGDSR------ 473 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +V + G E G K +V +TPFY +GGQ GD G Sbjct: 474 ----------------VVALLDATGLPSEGLPKGAKGYLVATRTPFYGASGGQTGDPGSI 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D K + + VH G + + + L ++ R + NH+ THLLH Sbjct: 518 TSPSGKARVLDTLKPSPELTVHQIETVDGEILPDQEVHLQVEEDERVASARNHTCTHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + PD LRFD TH +T E+ ++E VN +I NLP+ T M Sbjct: 578 AALRRVLGDHVKQAGSLVAPDRLRFDFTHIAAMTPEEIAAVEREVNRVILANLPLETDHM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A+ GA AL G KY D VRVV++ S LCGGTH+ +TG+ L I+SE Sbjct: 638 AYDAALTRGAMALFGEKYGDEVRVVAIA-----DESVELCGGTHLRATGQAGLFLILSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG A +M Q +L +A LK G +V RVE + ++ + L+ Sbjct: 693 GVAAGVRRIEAITGWNALRMVMDQRAELGQVAGLLKARSGEIVPRVEALQKDVKSLRKDL 752 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K Q +I V ++ + + K L+ +MD ++ K+ SGI L Sbjct: 753 EKASSQATSGQGRNIMDELAEINGVKVLAAKVEVPNVKALRDLMDDVRSKLPSGIACLAA 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K S+++ V++DL DRF A L + A +GG G GGRP MAQ+GG N D+A Sbjct: 813 PDGD-KVSLIVAVSKDLHDRFTAPALIKAVAAAVGGSG-GGRPDMAQAGGTNPAGIDEAF 870 Query: 890 AGVASFL 896 + + Sbjct: 871 DILRKTI 877 >gi|325128607|gb|EGC51476.1| alanyl-tRNA synthetase [Neisseria meningitidis N1568] Length = 874 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 369/912 (40%), Positives = 516/912 (56%), Gaps = 59/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + Sbjct: 60 ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 ++ + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGP Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 CSEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGL Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+ Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE Sbjct: 299 LPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN- 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F + + A + + K L T+F GY Sbjct: 416 IEPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE-------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 ---------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 505 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G R ++ D QK +F + G L+ S+ +D + R NHSAT Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 566 HLMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769 +SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A+ K +L V + ++ I + L+ ++ L K + I Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAI 799 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 800 VLLAAV-NEGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGK 857 Query: 885 ADQAIAGVASFL 896 + V ++ Sbjct: 858 LPAVLDSVKDWV 869 >gi|325132719|gb|EGC55402.1| alanyl-tRNA synthetase [Neisseria meningitidis M6190] Length = 881 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 68 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 188 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 306 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 366 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GSKKLDGEIIFKLYDTYGFPYDLTADICRERN-I 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 424 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 468 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 514 GYIFSGENRFEVLDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 574 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 634 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 808 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 865 Query: 886 DQAIAGVASFL 896 + V ++ Sbjct: 866 PAVLDSVKDWV 876 >gi|226940409|ref|YP_002795483.1| alanyl-tRNA synthetase [Laribacter hongkongensis HLHK9] gi|226715336|gb|ACO74474.1| Sya [Laribacter hongkongensis HLHK9] Length = 877 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 382/914 (41%), Positives = 534/914 (58%), Gaps = 60/914 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +L+FF GH+++PSSSL+P DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKASEIRQKYLDFFASKGHQIVPSSSLVPWEDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTDPKWLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L +TVY D+EAF +W K G+ A+KI+RI N DNFW M +TGPCGPC Sbjct: 121 LPKEKLMVTVYASDDEAFDIWNKEIGVPAEKIVRIGDNKGAPYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMGLE Sbjct: 181 TEIFYDHGDHIWGGPPGSPDEDGDRFIEIWNNVFMQFNRTEDGVMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++LI+A+ + TG+ + + +VI DH+R+ SFLIADG++ Sbjct: 241 RISAVLQGVHSNYEIDLFQNLIRAAARETGVP-FSMDEPSLKVIADHIRACSFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+N+GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL + LIE+ L Sbjct: 300 PSNDGRGYVLRRIIRRAIRHGYKLGQKGLFFHRLVTDLVAEMGDAYPELRAKQALIEDEL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+ +F +TLD+G+ LL+ L ++L+G AF+LYDT+G PLD+ DI R L Sbjct: 360 KKEEIKFAETLDKGMALLEEALKD--GVQVLDGKTAFQLYDTYGFPLDLTADICRERDL- 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+E QR+++RA S G L+ T+F GY Sbjct: 417 QVDQDGFDAAMEAQRAQSRAASTFKMGG-------KLEYAGDDTRFEGY----------- 458 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + G+ V+ +G VV D+TPFYAE GGQ+GDT Sbjct: 459 ------------AESTAEGRILALYKDGQPVDTLSAGDSGVVVLDRTPFYAEGGGQIGDT 506 Query: 532 GCAIGDGI---RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G G + D QK F H + RG L+T M++V TID RR + NHS Sbjct: 507 GTLAATGGLDALFDVLDTQKVTAAAFGHEGRLVRGQLKTGMTVVATIDLHRRRAIQRNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 THL+H AL +LG HV+Q GS +T + RFD +H +P+++ ++ IE VN +I N Sbjct: 567 VTHLMHAALRDVLGKHVTQKGSLVTAERTRFDFSHHEPVSAEQMAEIERIVNFVIGANYD 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V R+M+ +DA GA AL G KY D VRV+ + G S+ LCGGTHVS TG+I Sbjct: 627 VSARLMSMDDAQKLGAMALFGEKYGDVVRVLKM-----GDFSTELCGGTHVSRTGDIGFF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IVSE + AG+RRIEA+TG+ A +++ QD+ ++ LK V R+ + ++ Sbjct: 682 KIVSEGGVAAGVRRIEAVTGEGAVAYVQSQDKLVRDACHMLKAQSHEEVAERIAALQDQL 741 Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L A+ K +L S + ++ + D+ L+ MD L+ ++QS Sbjct: 742 KGLDKEVARLKGKLAASAGEELAASAVTVNGARLLAAELEGADAATLRDTMDKLKDRLQS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + K + VT+DL + A +L A +GG G GG+P +A +GG Sbjct: 802 AVIVLAS-KADGKVQLAAGVTKDLTGKVKAGELVNFVAGQVGGKG-GGKPDIAMAGGSEP 859 Query: 883 NKADQAIAGVASFL 896 K +A+A V ++ Sbjct: 860 EKLAEALASVQGWV 873 >gi|163731786|ref|ZP_02139233.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149] gi|161395240|gb|EDQ19562.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149] Length = 885 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 423/895 (47%), Positives = 567/895 (63%), Gaps = 41/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T++ + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWNLVTRDLGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY DEEA +WKK G+ D+II I TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLYVTVYHTDEEAAAIWKK-VGVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLTAQSIDTGMGIERVAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS + +G +HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+AYPEL QA+ +I +TL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMITQTLLQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD L+ L + L G AFKLYDT+G PLD+ QD L +G G+D F+ Sbjct: 360 QTLERGLKLLDDELNALPDGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+++ARA G G +WF + + G T F+GYD Sbjct: 419 AAMAAQKAKARAAWSGTGEAADATVWFDVADAEGTTDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+VQ G + A +G+ V++ +QTPFYAE+GGQ+GD+G Sbjct: 461 -----TEVAEGQIVALVQDGAATDTATTGETVQIALNQTPFYAESGGQVGDSGVIKTAKG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +TD +K A+ +FVH A V G++ + L +D R + NHSATHLLH AL Sbjct: 516 TATVTDCRKTAD-VFVHTAKVTEGVISVGEAAQLAVDPARRTAIRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H++ ++S EL +E +VN I QN PV TRIM + A Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSSEELARVEADVNTYIRQNAPVETRIMTPDAA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ +G +S LCGGTHV TG+I + Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSAKGLNGDTYSLELCGGTHVRQTGDIGAFVALG 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG A +HL QD++L +AS LK +V RV + +E R L Sbjct: 695 DSASSAGVRRIEALTGAAALAHLRAQDQRLAEVASDLKAQAADVPERVRSLLDERRALSN 754 Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + +L + S +A ++ ++S V K+L ++D +++++ SG+++ Sbjct: 755 EVAQLRRELAMSGGSGSAAPDVKDVAGTPLLAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L+ + KA+V VT+DL ++ +AVDL + + LGG GGGGRP MAQ G + Sbjct: 815 LIA-DADGKAAVAAGVTKDLTEKVSAVDLVKAAVSALGGKGGGGRPDMAQGGAKD 868 >gi|162147971|ref|YP_001602432.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|209542589|ref|YP_002274818.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|161786548|emb|CAP56130.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Gluconacetobacter diazotrophicus PAl 5] gi|209530266|gb|ACI50203.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 881 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 423/889 (47%), Positives = 579/889 (65%), Gaps = 31/889 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS + IR FL++F NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y Sbjct: 1 MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW L+T+ F L Sbjct: 61 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + RL TVY +DEEA LW+K++GL ++IIRI T DNFW M +TGPCGPCSEIFFD Sbjct: 121 PRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFWRMGDTGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G E+G+R++EIWNLVFMQF + R LP+ SIDTGMGLER A ++Q Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS + TG +G +HRV+ DHLRS+SFLIADG+LP+ +GRGY Sbjct: 241 KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G E + L+PAL +MG+AYPEL+QA+ LI ET+R E+ERF Sbjct: 301 VLRRIMRRAMRHLHMMGTRETVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL LL + LG + L GDVAFKLYDT G PLD+ QD L +D+ F+ Sbjct: 361 AMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDLTQDALRGSSH-DVDVTGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ QR RARA G G TE +WF ++++GA++F+GY Sbjct: 420 RAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + ++AIV G V EA +G ++ ++ +QTPFY E+GGQ+GDTG G+ Sbjct: 461 ----ATEQADAEIQAIVTDGRSVTEAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+ +TD QK+ + VH+ V G +R ++ T+D+ R + +HSATHLLH AL Sbjct: 517 RIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS PD LRFD++ +P+T E+ +E VN I +N PVVTR M++E+A Sbjct: 577 RLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY D VRVV + +D S LCGGTHV+ TG+I L I SE+ + Sbjct: 637 VAQGAMALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVS 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+TG+ A + +++L +A+ L+VS R+ I +E + ++ + Sbjct: 697 AGIRRIEAVTGKSAEQAAVATEQRLGQMAAMLRVSAAEAPERLAVILDERKVMERQISDL 756 Query: 778 KLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + +L + I + F++ + ++ ++ELK + D+L++++ SG++ LV + E Sbjct: 757 QRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQQVGSGVVALVSTA-EG 815 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 K SV++ VT DL DR +AV+L RL++ +GG GGGGR MAQ+GGP+ Sbjct: 816 KGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPDIA 864 >gi|225075679|ref|ZP_03718878.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens NRL30031/H210] gi|224952950|gb|EEG34159.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens NRL30031/H210] Length = 874 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 370/912 (40%), Positives = 517/912 (56%), Gaps = 59/912 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTT-ELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + Sbjct: 60 ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 ++ + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGP Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 CSEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGL Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+ Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE Sbjct: 299 LPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN- 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D FN+ + A + + K L T+F GY Sbjct: 416 IDLDEEGFNREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE-------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 ---------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 505 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G R ++ D QK +F + G L+ S+ +D + R NHSAT Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 566 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVN 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769 +SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ A+ K +L V + ++ I + L+ ++ L K + I Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGSAKLVAAQIEAD-AAALREIVTDLTGKSEQAI 799 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 800 VLLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEK 857 Query: 885 ADQAIAGVASFL 896 I V ++ Sbjct: 858 LPAMIESVKDWV 869 >gi|86138306|ref|ZP_01056880.1| alanyl-tRNA synthetase [Roseobacter sp. MED193] gi|85824831|gb|EAQ45032.1| alanyl-tRNA synthetase [Roseobacter sp. MED193] Length = 883 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 440/896 (49%), Positives = 577/896 (64%), Gaps = 39/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E YQ Sbjct: 1 MATLNDIRSTFLNYFAKQGHEIVDSSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF +WKK+ G+ D+IIRI T DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLLTTVYHTDDEAFAIWKKL-GVPEDRIIRIDTADNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEKFEDGSMTPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT G+ V+HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKSLIEASADVTSSDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL QA+ +IEETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGQAQSMIEETLKLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD +S L + L G AFKLYDT G PLD+ QD L +G +D F+ Sbjct: 360 QTLERGLKLLDDEVSGLDEGAPLPGSAAFKLYDTFGFPLDLTQDALREKGRE-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +WF + +K+GAT F+GY+ Sbjct: 419 SAMAEQKAKARAAWAGSGEAADSTVWFDIADKHGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V EA G KV++V +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEIAEGQVVALVKDGGEVSEAGLGDKVQLVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +Q++D KK+ G+F+H V G++ L +D R + NHSATHLLH AL Sbjct: 516 LVQVSDT-KKSAGVFIHIGQVVEGLVTAGAPAQLVVDPTRRSAIRANHSATHLLHEALLE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K ++ AEL + +VN I QN PV TRIM +DA Sbjct: 575 ALGEHVAQRGSLNADDRLRFDFSHTKALSDAELCQVSADVNAFIRQNTPVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ D G +S LCGGTHV TG+I I+ + Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKADTGKGQSGDTYSIELCGGTHVRQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A HL ++ +A LK G+V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAFEHLQRTAGQMAEIAGTLKAQPGDVMDRLKSMMDERKALQNE 754 Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K QL + + +I F++ + V K+L++++DA ++ I SG+I+L+ Sbjct: 755 ISTLKQQLAMGGGAGGGVEAKEIGGKKFLAQALEGVSGKDLRALIDAHKQSIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + K +V VT+DL+ +AVD+ R + +GG GGGGRP MAQ GG + + Sbjct: 815 A-EEGGKVAVAAGVTDDLIGDVSAVDVLRAAVPAVGGKGGGGRPDMAQGGGKDFDG 869 >gi|90408728|ref|ZP_01216876.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3] gi|90310179|gb|EAS38316.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3] Length = 869 Score = 871 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 371/886 (41%), Positives = 522/886 (58%), Gaps = 46/886 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK+ F G E+ Y Sbjct: 5 KSTSEIRQGFLDFFANKGHQVVSSSSLVPANDPTLLFTNAGMNQFKDTFLGSEQRSYVRA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E L Sbjct: 65 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWEYLTVELGLP 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+ITVYD+D EA K+W + G+ + RI DNFWSM +TGPCGPC+EIF+D GE Sbjct: 125 KEKLWITVYDKDPEAEKIWIEEIGVDPACLSRIGAKDNFWSMGDTGPCGPCTEIFYDHGE 184 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P E+G+RYIEIWNLVFMQ+ + LPK S+DTGMGLER++ +LQ Sbjct: 185 HIWGGPPGTPEEDGDRYIEIWNLVFMQYNRHADGTMVDLPKPSVDTGMGLERISAILQNC 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+ +VTG + RV+ DH+RS FLI DG++P+NEGRGYV Sbjct: 245 HSNYEIDLFQALIKKVAEVTGATD--LEDKSLRVVADHIRSCGFLICDGVMPSNEGRGYV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + L +MG YPEL + + +E+ LR E+E+F K Sbjct: 303 LRRIIRRAVRHGNKLGAQGVFFFKIYGELILQMGDTYPELGKQRDFVEKILRLEEEQFAK 362 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL RGL +LD L L +++G+ FKLYDT+G P D+ DI R L IDI FN Sbjct: 363 TLVRGLQILDNALESLE-GNVISGETVFKLYDTYGFPADLTADIARERDLI-IDIDGFNT 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++EQR+RA+ + + TQF+GY+ L+ Sbjct: 421 LMDEQRTRAKK------VDHFGTDYNDGLKFDEKTQFLGYEHLQH--------------- 459 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S+ V +V++GE+V G+ V+ QTPFYAE+GGQ+GD+G + Sbjct: 460 --------SATVSILVKEGELVPALNQGEHGHVILKQTPFYAESGGQVGDSGRLVLKDGI 511 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +TD +K + F+H VE G + ++ +D + R+ ++++HSATHLLH AL Sbjct: 512 FNVTDTKKSGDT-FLHIGYVESGNISVHDEIIAEVDSERRKAIALHHSATHLLHAALRQT 570 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS D LRFD +H + ++S L+ + VN I N+ V+T++ + E+A Sbjct: 571 LGEHVTQKGSLCDADKLRFDFSHFEGLSSQVLEQVNYLVNSAIRDNVSVLTKLSDIEEAK 630 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY++ VRVVS+ G S+ LCGGTH S TG + L +I SES I AG+ Sbjct: 631 TAGAMALFGEKYDEMVRVVSM-----GALSTELCGGTHTSRTGNMGLFFIRSESGIAAGV 685 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA G+ A L + +K ++ ++ + E R L+ K++ Sbjct: 686 RRIEACVGKAAELALHDVMSQFTKSCELVKGDASSLSDKILQTLERNRALEKELHTLKIK 745 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + + I V + + +D K L+ +DA++ K+QSGI++L + K Sbjct: 746 MAASAGSDLVANAIIINGVKVVIADLPGIDPKSLRDSVDAMKNKMQSGIVVLGTAVADDK 805 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S+++ VT+DL + A +L + A + GG GGGRP MA +GG + Sbjct: 806 VSLIVGVTKDLTKKVKAGELVNVVAAPV-GGKGGGRPDMAMAGGND 850 >gi|320354759|ref|YP_004196098.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] gi|320123261|gb|ADW18807.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] Length = 882 Score = 871 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 382/909 (42%), Positives = 537/909 (59%), Gaps = 45/909 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FLEFF+ GH + +SSL+P +DPTL+FTNSGMV FK +F G+E Y Sbjct: 1 MTGNEIRACFLEFFESKGHTRVAASSLVPHDDPTLLFTNSGMVQFKKVFMGEETRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD Sbjct: 61 TTAQSSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWEFLTKKLGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+++VY++D+EA++LW++I L +I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 121 PNKLWVSVYNDDDEAYRLWERIEDLPKGRIVRMGEKDNFWAMGDTGPCGPCSEIHIDQGA 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + +R++E+WNLVFMQF + LPK SIDTGMGLER+A VLQ Sbjct: 181 EVGCGRPDCALGCDCDRFLELWNLVFMQFYRDEHGTMTPLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K NN+D DLF +I + G KY N + V+ RVI DH R+++FL+ADG+LP+NEGR Sbjct: 241 KFNNFDCDLFTPIIDHVAALAGKKYHENRADDVSMRVIADHARATTFLVADGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA+ Y R LG + + + M AYP L + L+ + + +E++R Sbjct: 301 GYVLRRIMRRAIRYGRALGLS-SFFPGVCALVTELMVHAYPHLGDTRELLAKVVTNEEQR 359 Query: 358 FGKTLDRGLVLLDGVLSHLG----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 FG+TLD GL L+ + L + +++GD FKLYDT+G P+DI++DI +G Sbjct: 360 FGETLDHGLNKLEQEIRRLKKAEGERAVIHGDFIFKLYDTYGFPVDIVRDIAIEKG-IAF 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+E+QR ++R G E L + +FIGY Sbjct: 419 DEPGFAQAMEQQREQSRKSWKGSDVDHLEAGIIELGSRGLKAEFIGY------------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V IV A G++V EA +G+ + + QTPFYAE+GGQ+GD G Sbjct: 466 ------ATTHGVSTVEGIVNA---SGQLVHEAKAGETLRLFCAQTPFYAESGGQIGDQGE 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++ EG+ +H + +G L T + L + R ++NH+ATHLL Sbjct: 517 ITWEDGRFVVSKTLAPVEGLILHEGQIAQGTLTTGTRVELQVA-DRRTDTALNHTATHLL 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 A+ +LG HV Q GS + + LRFD TH P+T E+ +IE VN I +N PV T + Sbjct: 576 QAAMKKVLGDHVKQAGSAVDHNRLRFDFTHFSPLTHGEICTIEQLVNAQIRRNTPVDTTL 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + RE AIA GA AL G KY + VRVV + G S LCGGTH TG+I L IV E Sbjct: 636 LGREQAIAEGATALFGEKYGEEVRVVRI-----GDFSKELCGGTHARMTGDIGLFKIVME 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + I AG+RRIEA+TG A + + ++++ L V +++ + + +++L+ Sbjct: 691 TGIAAGVRRIEAVTGAGAIHWVQELARQANAISAVLSGPLDGAVDKIQGLLKRHKELEKQ 750 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A + + DL S ++ + ++ + K L+ + D ++ ++QSGII+L Sbjct: 751 IAALNASMALSDLDQLLASSIELDGMRVVASRVPLDSPKTLREIGDKIRDRMQSGIIVLG 810 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G E KA++L +V++DL R A DL +A V+ GG GGGRP MAQ+GGP +K D+A Sbjct: 811 G-EFEGKAALLAMVSKDLTGRIKAGDLVNRAA-VIVGGKGGGRPDMAQAGGPMPDKLDEA 868 Query: 889 IAGVASFLK 897 I VAS +K Sbjct: 869 INSVASIIK 877 >gi|329890683|ref|ZP_08269026.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] gi|328845984|gb|EGF95548.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] Length = 881 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 421/905 (46%), Positives = 577/905 (63%), Gaps = 33/905 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++ IR+TFL++F +GHE + S+ L+P NDPTL+F N+GMVPFK+ FTG P Y+ Sbjct: 1 MTSLKQIRSTFLDYFAADGHEKVQSAPLVPQNDPTLLFVNAGMVPFKDYFTGAAVPPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLTKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIESAWGLLTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +TVY D++AF +WKK++G + +KIIRI TNDNFW+M ++GPCGPC+EIF+D G Sbjct: 121 DPARLLVTVYHTDDQAFDIWKKVTGFADEKIIRIPTNDNFWAMGDSGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+R++EIWN VFMQFE++N + LPK S+DTGMGLER+A VLQ Sbjct: 181 DHIFGGPPGSPDEDGDRFVEIWNNVFMQFEKENDEIVRELPKKSVDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD+DLFK LI ASE++T K EG +HRVI DHLRS++FLIADG+ P+NEGRGY Sbjct: 241 VHSNYDVDLFKSLINASEELTSTKAEGERAPSHRVIADHLRSTAFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L EMG AYPEL +A+ IE+TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVQEMGEAYPELGRAQAFIEDTLKQEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ L D + ++L+G AF LYDT+G PLD+ QD RG + +++ F Sbjct: 361 TTLGRGMNLFDQATTGFKAGDMLDGQTAFTLYDTYGFPLDLTQDEARRRGFS-VNVDGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR R+R H G G + W +L++++G T+F GY+ Sbjct: 420 SAMAEQRDRSREHWKGSGQTASAGAWLALRDQHGGTEFTGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V AIV+ G A +G+ VEV+ D+TPFY E GGQ GD G + G Sbjct: 462 -----SETGEGKVLAIVKDGAEAASAATGETVEVLLDKTPFYGEGGGQAGDKGAFVWSGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D +K + VH V +G L + T++ +R NHSA HL H A+ Sbjct: 517 EGRVLDTKKHGGDLHVHTLEVTKGALAAGAVVTATVEEGSRPTTRANHSAAHLFHAAVKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q G + + +RFD +H+ P+T E+ +ED VN +I QN+PV T +M + A Sbjct: 577 VLGAHVAQKGQMVDAERMRFDFSHNAPMTDEEIARVEDEVNAVIRQNVPVTTELMTPDAA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIR 717 IA+GA AL G KY D VRV+++ G +S LCGGTHV TG+I L IVSE + Sbjct: 637 IAAGAVALFGEKYGDEVRVLTIGRALSGPGAYSVELCGGTHVFRTGDIALFKIVSEGGVA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RR+EA+TG+ AR L+ Q +SLA K+ V RVE + + L+ A Sbjct: 697 AGVRRVEALTGEAARRFLLDQANVARSLAQGFKIQTAEVPARVEGLQASVKTLEKQVADL 756 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + +I + M+ ++ VD K L+ V + +K+I SG++ LVG+ Sbjct: 757 KKQLALGGGAGANAAPEEIGGIKLMARVLDGVDGKGLRGVAEDFKKQIGSGVVALVGVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA++ + T D+ + NA DLAR + +GG G GG+P AQ G P+G+KA+ + + Sbjct: 816 DGKAAITVAATPDMAGKVNAADLARDAVIAMGGKGAGGKPDFAQGGAPDGSKAEDGLNAI 875 Query: 893 ASFLK 897 + LK Sbjct: 876 RAALK 880 >gi|205830264|sp|A9M198|SYA_NEIM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858 Query: 886 DQAIAGVASFL 896 + + V S+L Sbjct: 859 PEMLVSVESWL 869 >gi|254673270|emb|CBA08330.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha275] Length = 885 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 521/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 578 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869 Query: 886 DQAIAGVASFL 896 + + V S+L Sbjct: 870 PEMLVSVESWL 880 >gi|304413367|ref|ZP_07394840.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] gi|304284210|gb|EFL92603.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] Length = 893 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 382/916 (41%), Positives = 553/916 (60%), Gaps = 60/916 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH ++ SSSL+P NDPTL+FTN+GM FKN+F G E+ Sbjct: 13 KSTAEIRQMFLDFFDSKGHRIVASSSLVPHNDPTLLFTNAGMNQFKNVFLGLEQSDSVRA 72 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F Sbjct: 73 TSSQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHFAWELLTSEQWFH 132 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L+ITVY DEE +++W G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 133 LPKDKLWITVYQTDEETYRIWADEVGIPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 192 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ + GG PGS EEG+RYIEIWN+VFMQF +Q LP+ S+DTGMGLE Sbjct: 193 TEIFYDHGDHLWGGPPGSPEEEGDRYIEIWNIVFMQFNRQLDGTMLALPQPSVDTGMGLE 252 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ+ +NY+IDLF+ LI+A ++T + + + RVI DH+RS +FLIADG++ Sbjct: 253 RIAAVLQQVNSNYEIDLFRDLIKAIAEITAVSD--LSNQSLRVIADHIRSCAFLIADGVM 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG L+ L + MGSA L Q + LIE+ L Sbjct: 311 PSNENRGYVLRRIIRRAIRHGHMLGIKRVFFYKLVAPLISVMGSAAEALKQQQSLIEQWL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS + + L G+ AF LYDT+G PLD+ D+ R L Sbjct: 371 KTEEEQFTRTLERGLALLDEELSKIT-GDTLAGETAFSLYDTYGFPLDLTADVCRERHLK 429 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+ QR RAR S + +L + G ++F GY+ Sbjct: 430 -VDEAGFERAMAAQRLRAR------DSNVFATDYNNLIKVEGKSEFSGYEH--------- 473 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE------AVSGQKVEVVFDQTPFYAEAG 525 +++ A++ G+ V+E A +++ V+ D+TPFYAE+G Sbjct: 474 ------------QHLQQQALIIALIHNGKAVDEIHFSDKAAPDEEILVILDKTPFYAESG 521 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD+G + D + D QK H + G LR S+ +D + R ++ + Sbjct: 522 GQVGDSGKLVNDSAHFTVRDTQKHGAT-IAHVGQLTTGCLRIGESINAAVDAERRHRIRL 580 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH AL LG HV+Q GS + LRFD +HS+ +T A+++ +E+ VN I Sbjct: 581 NHSATHLLHAALRQTLGQHVAQKGSLVNDHYLRFDFSHSQAMTKAQIQQVENQVNAEIRA 640 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NLP+ T+IM E+A +GA A G KY+D+VRV+++ G S LCGGTH + TG+I Sbjct: 641 NLPIETKIMALEEAKKTGAMAFFGEKYSDKVRVLTI-----GTFSIELCGGTHTNRTGDI 695 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L I +ES+ AGIRRIEA+TG+ A + L + L ++ LK N++ ++ +I E Sbjct: 696 GLFRITAESATAAGIRRIEAVTGEAAMTLLHQESHLLHKISYQLKGDSSNLLDKISKIQE 755 Query: 766 EYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + L+ + K Q + S +I + + + + LK+++D+L++++ Sbjct: 756 HNKNLEQELQQLKAQQAKQKSISLSDSAQQIKGGKLLVKQVDNIAPEMLKTLIDSLKQEL 815 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +S II+L ++ K +V++ VT++L D+ A +L AK + GG GGGR MA GG Sbjct: 816 KSAIIVLA-TKQDNKVNVIVGVTKNLTDKIKAGELVADLAKQV-GGKGGGRAEMAMGGGT 873 Query: 881 NGNKADQAIAGVASFL 896 N A+A V +++ Sbjct: 874 NVATLPAALASVRAWV 889 >gi|89054478|ref|YP_509929.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1] gi|122498736|sp|Q28QV8|SYA_JANSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88864027|gb|ABD54904.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1] Length = 884 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 436/893 (48%), Positives = 580/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL++F + GH ++PSS L+P NDPTLMF NSGMV FKN+FTG EK Y Sbjct: 1 MTSLNDIRSTFLDYFGRQGHAVVPSSPLVPRNDPTLMFVNSGMVQFKNLFTGVEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+TK+F L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRYAWELITKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY D+EAF++WKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKARLYVTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS+ E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 EHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFADGTMVPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D + L++AS + +G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDTMRALMEASAHASSTDLDGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL ++MG AY EL QA+ LI ETL+ E+ERF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMYRLVPALVSQMGQAYSELGQAQALITETLKLEEERFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD ++ L +D L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDEVAKLPEDGNLPGAAAFKLYDTYGFPLDLTQDALREQGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + EK G T+F+GYD Sbjct: 419 AAMAEQKAKARAAWSGSGDAADATIWFDIAEKNGVTEFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G V++ S Q V V +QTPFYAE+GGQ+GD+G + Sbjct: 461 -----TEVAEGQVLALVVDGARVDKVASNQDVIFVTNQTPFYAESGGQVGDSGTIRTETG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L +T+ +K G+F+H V G ++ L++D++ RR + NHSATHLL+ AL Sbjct: 516 VLHVTET-RKVAGVFLHVGQVTEGTIKVGQGASLSVDHERRRYICANHSATHLLNEALRW 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +G V Q GS + D LRFD +H+KP+T+ EL +E VND+I +N V TR+M +DA Sbjct: 575 AIGDSVVQRGSLNSRDRLRFDFSHNKPMTADELAQVEAEVNDLITRNTAVETRVMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + D +S LCGGTHV TG+I I+S Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGHHAGSGKGLDKDTYSIELCGGTHVKRTGDIGPFVILS 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES+ AG+RRIEA+T Q A +L Q+E++ LA+ L +V+ RV+ + ++ +KL+ Sbjct: 695 ESASAAGVRRIEALTNQTASFYLSEQNERMGQLAAELNTQAADVLDRVKALKDDRKKLEN 754 Query: 773 IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ + +L + + VNF + +S V K+L ++D + ++ SG ++L+ Sbjct: 755 EVAQLRRELAMAGGTSAPEAASVNGVNFHAQALSGVTGKDLAGIVDEHKARLGSGAVLLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K A VTEDL DR +AVDL R + LGG GGGGRP AQ GG + Sbjct: 815 ADAGGKAAV-AAGVTEDLTDRLSAVDLVRAAVAELGGKGGGGRPDFAQGGGKD 866 >gi|218768564|ref|YP_002343076.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491] gi|20532265|sp|Q9JTG4|SYA_NEIMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|121052572|emb|CAM08912.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491] Length = 874 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858 Query: 886 DQAIAGVASFL 896 + + V S+L Sbjct: 859 PEMLVSVESWL 869 >gi|114767542|ref|ZP_01446296.1| alanyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601] gi|114540395|gb|EAU43481.1| alanyl-tRNA synthetase [Roseovarius sp. HTCC2601] Length = 891 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 422/902 (46%), Positives = 564/902 (62%), Gaps = 45/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F+K GH+++PSS L+P NDPTLMFTNSGMV FKN+FTG E Y+ Sbjct: 1 MPSLNDIRSTFLGYFEKQGHQVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK+ AI AW+L+T+E D+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKKEAIPFAWELVTRELDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +T+Y D+EA ++WKK +G+ D+IIRI T DNFW M TGPCGPC+EIFFD G Sbjct: 121 PAERLLVTIYHTDDEAAEIWKK-TGVPDDRIIRIDTTDNFWMMGPTGPCGPCTEIFFDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++EIWNLVFMQ EQ L SIDTGMG+ER+A +LQ Sbjct: 180 DKYWGGPPGSPEEDGDRFVEIWNLVFMQNEQFEDGSMRALDMQSIDTGMGIERVAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 TNDNYSTDLIRALIEASADATSSDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG AYPEL++A+ LIEETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVRQMGQAYPELVRAQPLIEETLKLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L LG+ L G AFKLYDT+G PLD+ QD L RG +D F+ Sbjct: 360 QTLDRGLKLLDDELVGLGEGAKLPGQAAFKLYDTYGFPLDLTQDALRERGRE-VDTGGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IWF + + GAT F+GYD Sbjct: 419 EAMAEQKAKARAAWSGSGEAADLAIWFEIADANGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G VE +G+ VV +QTPFY E+GGQ+GD+G Sbjct: 461 -----TETAEGQMLALVKDGAEVEALEAGESGWVVMNQTPFYGESGGQVGDSGWMRRLED 515 Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +V + +F H +++G ++ L +D+ R ++ NHSATHLLH Sbjct: 516 EHDLAEVTDTQKMGGGKVFAHQVTIKQGRFAKGEAVALEVDHARRGKIRANHSATHLLHE 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS P+ LRFD +H+K +T E+ +E VN I QN V TRIM Sbjct: 576 ALRRALGDHVAQRGSLNAPERLRFDFSHAKALTPEEISRVEREVNAFIRQNSAVNTRIMT 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLL 708 +DA A GA AL G KY D VRVVS+ DG +S LCGGTHV+ TG+I Sbjct: 636 PDDARALGAQALFGEKYGDEVRVVSMGTEAGSGKGGDGQTYSIELCGGTHVAQTGDIGTF 695 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + SE++ AG+RRIEA+TG+ A + L G+D+ L + LK V RV + +E R Sbjct: 696 ALTSETASAAGVRRIEALTGEAAMAELRGRDKALGEIEGLLKAHGAEAVSRVGALLDERR 755 Query: 769 KLQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 KL+ A+ + L ++ V+F++ ++S V K+L ++D + ++ Sbjct: 756 KLENEVAQLRRDLAMAGGAGQGGGAEAREVGGVSFVAQVLSGVSGKDLPPLIDEHKARLG 815 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SG ++L+ K +V VTEDL +AVDL + + + LGG GGGGRP MAQ G + Sbjct: 816 SGAVLLIA-DTGGKVAVAAGVTEDLTGSHSAVDLVKAAVEALGGKGGGGRPDMAQGGAKD 874 Query: 882 GN 883 + Sbjct: 875 AS 876 >gi|161870450|ref|YP_001599622.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442] gi|161596003|gb|ABX73663.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442] Length = 885 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869 Query: 886 DQAIAGVASFL 896 + + V S+L Sbjct: 870 PEMLVSVESWL 880 >gi|115375322|ref|ZP_01462586.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] gi|115367695|gb|EAU66666.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] Length = 922 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 370/919 (40%), Positives = 534/919 (58%), Gaps = 56/919 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF+ GH + SS L+P NDPTL+FTN+GMV FK++FTG+EK Y T Sbjct: 31 TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 90 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 91 TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 150 Query: 123 RRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL +TV++ D EAF+LW + G+ D+I+++ DNFW+M +TGPCGPCSEI Sbjct: 151 ERLAVTVFNGEQGVPWDAEAFELWAQQ-GVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 209 Query: 177 FDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQ-ERFILPKMSIDTGM 228 + QG+ IP G + + +R++EIWNLVFMQFE++ K LPK SIDTG Sbjct: 210 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 269 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A+V+Q K +NYD DLF+ ++ ++ G Y + RVI DH R+++FLI+D Sbjct: 270 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 329 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRRIMRRA+ + LLG + ++ + M AYPEL + + + Sbjct: 330 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 389 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E R E+E F +TLDRG+ L+D ++ L + + L+G F L+ T+G P D+ Q IL Sbjct: 390 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 449 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 RG D+ F + +E + + G G ++ +L E+ G ++F+ Sbjct: 450 ERGFDA-DLDGFWKEME--KEADKNKFGGSGEKAISTVYQTLAERLGTSEFL-------- 498 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V+AI++ G V +A +G+ VE+V D+TPFY E+GG Sbjct: 499 -------------GYEGEGHEGEGSVRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 545 Query: 527 QLGDTGCAIGDGIRLQIT--DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q GDTG G G + DVQ+ G+ VHH V+ G +T + +D Q R+ + Sbjct: 546 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 605 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV Q GS + PD LRFD +H T +L+ +ED VN + Sbjct: 606 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 665 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N TR+M ++A SGA A+ G KY + VRVV+V S+ LCGGTHV +G+ Sbjct: 666 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHP-----QSTELCGGTHVRRSGD 720 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I +G+RRI A+TG A +L + +L+ A LK S + RVE Sbjct: 721 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 780 Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + ++L+ + ++ ++ + ++ + D K + + D L+ + Sbjct: 781 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 840 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 I+SG++ +G K+ KA +L+ VT+D++++ +A L R AK +GG G GG+ MAQ+G Sbjct: 841 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEVGGKG-GGKADMAQAG 898 Query: 879 GPNGNKADQAIAGVASFLK 897 GP+ +K A+ + K Sbjct: 899 GPDASKLPAALDKLYELTK 917 >gi|170722926|ref|YP_001750614.1| alanyl-tRNA synthetase [Pseudomonas putida W619] gi|169760929|gb|ACA74245.1| alanyl-tRNA synthetase [Pseudomonas putida W619] Length = 897 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 377/896 (42%), Positives = 530/896 (59%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 24 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 83 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 84 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 143 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 144 LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 203 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 204 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 263 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ V+Q +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 264 RISAVMQHVHSNYEIDLFQNLLSAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 321 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 322 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 381 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 382 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 440 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT F+GY+ G Sbjct: 441 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDTATDFVGYNATEG------ 487 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDT Sbjct: 488 -----------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 530 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 531 GYLQSGAVRFDVQDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 589 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + +T A++K++ED VN + +N PV T Sbjct: 590 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVET 649 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I + E A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 650 EITDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 705 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 706 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLE 765 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 766 KQLEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 825 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 826 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 879 >gi|325295645|ref|YP_004282159.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066093|gb|ADY74100.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 879 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 375/906 (41%), Positives = 544/906 (60%), Gaps = 43/906 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL FF+ H + SS LIP NDPTL+FTN+GMV FK+ F G+EKP ++ T Sbjct: 5 TGKEIREAFLRFFEDKEHFRVKSSPLIPKNDPTLLFTNAGMVQFKDYFLGKEKPPFKRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK F L + Sbjct: 65 SCQKCMRAGGKHNDLENVGKTGRHHTFFEMLGNFSFGDYFKKEAIEFAWELVTKVFKLPE 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY++VY++D+EAF++W K+ G+ +KI ++ DNFW+M +TGPCGPCSEI++D+GE Sbjct: 125 DRLYVSVYEKDDEAFEIWNKLIGIPENKIYKLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 184 Query: 183 IPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G + +RY+EIWNLVFMQFE+ + L SIDTGMGLER+A+VLQ Sbjct: 185 FACGENCEIGKCDCDRYLEIWNLVFMQFERDESGKLTPLAHPSIDTGMGLERIASVLQNV 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY+ DL L++ + ++G Y + + RVI DHLR+ +FLIADG+LP+NEGRG Sbjct: 245 PSNYETDLLFPLVKWASDLSGTPYGKDEKSSTSMRVIADHLRALTFLIADGVLPSNEGRG 304 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA + RLLG +P + + + MG YPE+++ LI++ E+ERF Sbjct: 305 YVLRRIIRRASRHGRLLGIDKPFLFEGVDEVLNIMGDTYPEIVENGRLIKKVTLKEEERF 364 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KTL+RGL + ++ L + +I+ G+ AFKLYDT G PLD++ ++ L +D+ Sbjct: 365 SKTLERGLYIFAEIIDKLRNEGKDIIPGEEAFKLYDTFGFPLDLILEVANDENLK-VDVS 423 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + L EQ+ RAR G L E+ + FIGYD L G Sbjct: 424 GFEKLLAEQKERARKAWKGGVQKVISPELQKLSEE-SPSIFIGYDHLEGI---------- 472 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V I++ G ++EEA G++V V+ D+TPFY E GGQ+GDTG G Sbjct: 473 -------------GKVTGILKDGRLIEEAKEGEEVTVILDKTPFYPEKGGQVGDTGIIEG 519 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++ D Q E + H +V++ ++ + ++ + R+ + H+ATHLLH A Sbjct: 520 NNCYCEVLDTQNITENLIGHKVVVKKEKVKVGDIVNAIVNEERRKAIMRAHTATHLLHKA 579 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD LRFD TH + T EL++IE+ V + + +N PV M+ Sbjct: 580 LREVLGNHVKQAGSLVLPDRLRFDFTHFEAPTEEELQTIEETVYNWVLKNYPVKIEEMSY 639 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++AI GA AL G KY D V D G S LCGGTHV +G+I ++SESSI Sbjct: 640 DEAIERGAIALFGEKYGDVV-----RVVDVGGVSVELCGGTHVERSGDIGFFKLISESSI 694 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G RRIEA+ G+ A ++ ++ +K L S L+ + ++ +VE++ EE + + + Sbjct: 695 SSGTRRIEAVVGKEAFKYIEEKEALIKKLRSSLQSPEEQLLQKVEKLKEELKAKEKELER 754 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L ++ I + ++ + KEL + D ++ K ++ +M+VGI Sbjct: 755 IKKKLATAEIDQIVEDAPIINGIKVVTAKLEGFGGKELAEIADVIRNKAKTAAVMIVGI- 813 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K+ KAS+LI +T+DL DRF A ++ R A +L G GGGRP MAQ G N +K ++A + Sbjct: 814 KDGKASLLIALTKDLTDRFKAGEIIREIAPILE-GRGGGRPDMAQGGVQNLSKLEEAFSE 872 Query: 892 VASFLK 897 K Sbjct: 873 FRKKFK 878 >gi|220931419|ref|YP_002508327.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168] gi|219992729|gb|ACL69332.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168] Length = 876 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 372/906 (41%), Positives = 543/906 (59%), Gaps = 48/906 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH +LPS+ LIP NDP+L++ N+GM PFK F G++KP + Sbjct: 3 TTSDELRKAYLDFFKDRGHLVLPSAPLIPRNDPSLLWINAGMAPFKPYFDGRKKPPKTRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +T QKC+R ND++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +T+ +L+ Sbjct: 63 STSQKCIRT----NDIENVGKTARHLTFFEMLGNFSFGDYFKEEAIEWAWEFVTRVLNLE 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+IT+Y +D+EAFK+W G+ ++I+R+ DNFW + TGPCGPCSEI +D+GE Sbjct: 119 ENRLWITIYKDDDEAFKIWHDKVGVPENRIVRMGKKDNFWEIG-TGPCGPCSEIHYDRGE 177 Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 EG+R++EIWNLVF Q+ + E LP+ +IDTGMGLER+A++LQ Sbjct: 178 EFGNSSEDVIGGEGDRFLEIWNLVFTQYNRTEDGEYLSLPQKNIDTGMGLERVASLLQGV 237 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N++ DL K +I Q +G++Y V RVI DH+R+ + I DG+LP+NEGRGYV Sbjct: 238 NSNFETDLLKPIINFVSQDSGVQYTEGQRVPFRVISDHIRAVTMAIHDGVLPSNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RRA+ Y L Y EP + ++P + M YPEL + + + ++SE+ERF + Sbjct: 298 IRRLLRRAVRYGGKLNYEEPFLYKIVPVVVDIMSGGYPELKEKEEHVSSVVKSEEERFFQ 357 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL++GL +L+ ++ + ++IL+G AFKLYDT+G PLD+ +D+L G +D F Sbjct: 358 TLEQGLNILNEMMEEMKDKGEKILSGKNAFKLYDTYGFPLDLTRDVLAEHGYK-VDEDVF 416 Query: 419 NQALEEQRSRARAHSLGLGSGTTE--KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + +E+QR RAR +G T+ I+ L+E+ G T+F GY L Sbjct: 417 TREMEKQRERARQARADVGFSGTDGEGIYKELREELGETEFTGYRSLSN----------- 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++ + IV+ G+ VE +G+K E++ + TPFYA GGQ+GD G I Sbjct: 466 ------------TTRIVGIVKDGQPVESLNNGEKGEIILNVTPFYARGGGQVGDKGILID 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 R ++ D +KK + VH+ VE+G R + + +D + R ++ NHS THLLH Sbjct: 514 SEHRARVYDTRKKGG-LTVHYTEVEKGEFRIDQVVEARVDEELRYNIARNHSTTHLLHKT 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q+GS + PD LRFD +H P+T E+ IED VN+ I NLPV M Sbjct: 573 LKEVLGDHVNQSGSLVAPDRLRFDFSHYAPLTEEEINRIEDTVNEKILSNLPVEILEMPF 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E A GA AL G KY VRVV + G +S LCGGTHV TGEI IVSE S+ Sbjct: 633 EKAKEMGAVALFGEKYGHIVRVVKI-----GDYSIELCGGTHVDRTGEIGSFKIVSEGSV 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ H+ D +K ++S LK S V+GR+ + EE +L+ Sbjct: 688 AAGVRRIEALTGKSVLEHIRKNDNTIKKISSILKTSPDEVIGRLSGLLEEQNELENKLQS 747 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K QL + KI V ++ + ++S L+ + D L++K++SGII+L + Sbjct: 748 LKDQLATSRVDELVDEVQKINGVKVLTAELKGIESDNLRKLSDKLKEKMESGIIVLAS-N 806 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K + VVT+DL++R F+A L A+V GGGG GGRP MAQ+GG +K +A+ Sbjct: 807 LGNKVIFVSVVTDDLVERGFHAGKLIGKVARVTGGGG-GGRPDMAQAGGKKVDKITEALD 865 Query: 891 GVASFL 896 + Sbjct: 866 EGKRII 871 >gi|153006742|ref|YP_001381067.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5] gi|205829977|sp|A7HH87|SYA_ANADF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152030315|gb|ABS28083.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5] Length = 904 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 369/934 (39%), Positives = 532/934 (56%), Gaps = 75/934 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL FF++ H +PSSSL+P NDPTL+FTN+GM FK++FTG+EK Y Sbjct: 1 MKTAAQIRELFLRFFEEKAHRRVPSSSLVPQNDPTLLFTNAGMNQFKDVFTGREKRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+T + Sbjct: 61 ATTAQKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTSERWL 120 Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + + RL TV+ DEEA++LW + G+ ++I ++ DNFW+M +TGPCGPC Sbjct: 121 AISKERLAATVFAGEGTLPWDEEAYRLW-EAQGVPPERIHKLGAKDNFWAMGDTGPCGPC 179 Query: 173 SEIFFDQGECIPGGLPG-------SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 SE+ F QG IP + + +R++EIWNLVFMQFE+ LPK SID Sbjct: 180 SELHFFQGNDIPCAEEKAGRTCQGVACDCDRWLEIWNLVFMQFERGADGGLTPLPKPSID 239 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSS 282 TG GLERMA V+Q K +NYDID F+ +I+A E++ G +Y + ++ V+ RVI DH R++ Sbjct: 240 TGAGLERMAAVVQGKRSNYDIDAFQSIIRAIEKLAGKRYGATDADDDVSMRVIADHARAT 299 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +FL+ DG+LPANEGRGYVLRRIMRRA+ + + LG P + + A+ EMG AYPE + Sbjct: 300 TFLVGDGVLPANEGRGYVLRRIMRRAIRHGKRLGLERPFLADVCEAVMEEMGGAYPETRE 359 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDV 386 + I + E+E F +TLD+GL +L+ + +++G + Sbjct: 360 NRAFIVKVAGQEEESFRRTLDKGLAILETEMRKAIPPETHLGKPATPPPSAPRPVIDGKL 419 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT G PLD+ + I RG +D F++ + EQR+R+ G G + Sbjct: 420 AFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRNMAEQRARS--EWKGSGEQAVGDLHK 476 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 + + G T+F+GY+ + VKA++ G +A Sbjct: 477 QIASELGETRFLGYEAP-----------------------TARAEVKALLANGARAAKAA 513 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 G KVEVV TPFY E+GGQ+GD G G R+++ D ++ G+ H +VE G L Sbjct: 514 RGDKVEVVTAATPFYGESGGQVGDQGSIAAPGGRVRVEDTRRPVPGLVTHVGVVEEGELA 573 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 + L +D + R + NHSATHLL AL LG HV Q GS + PD LRFD +H +P Sbjct: 574 VGDLVELAVDDRRRDLIRANHSATHLLQLALRETLGDHVKQAGSIVAPDYLRFDFSHFQP 633 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 ++ EL +IE VN+++ +N T ++ EDA SGA + G KY D VRVV + Sbjct: 634 LSEEELNAIERRVNELVRENAETETAVLKLEDARQSGAMMIFGEKYGDVVRVVRLGP--- 690 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S LCGGTHV TG+I I SE SI AG+RRI A TG +A + ++L+ A Sbjct: 691 ---SKELCGGTHVRRTGDIAFFKIGSEESIAAGVRRIVAYTGPQAIELSQREADELRRAA 747 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801 + K V ++E+ + + L+ + K ++ + ++ + Sbjct: 748 ALFKAGAFEVAQKIEQTQKRVKDLERALDEAKGKIASAQSGDLAAQARDVKGAKVLAVRV 807 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 D K L+ + D L+ ++ +G++ L G ++ KA +L+ VT+DL R A +L + +AK Sbjct: 808 QG-DGKSLRELADKLRDRLGTGVVAL-GAEQDGKAILLVAVTKDLTARLKAGELVKEAAK 865 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ GG GGG+P +AQ+GG + ++A+A V Sbjct: 866 LV-GGSGGGKPDLAQAGGSDPAGLEKALAKVQEL 898 >gi|261364444|ref|ZP_05977327.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996] gi|288567357|gb|EFC88917.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996] Length = 873 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 364/913 (39%), Positives = 524/913 (57%), Gaps = 58/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 LPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +V+ DH+RS SFLIADG++ Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D FN+ + A + K L T+F GY+ Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + E V+E +G+ VV +QTPFYAE+GGQ+GD Sbjct: 460 -------------KRSQETKIIALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK + V G L+ ++ ID R + NHS TH Sbjct: 507 GFIFAGENRFRVEDTQKIKAAVHGQFGSVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + RFD++H + I++ E+ +E VN I N+PV Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ EDA SGA L G KY D VRV+++ G +S LCGGTHV+ TG+I I+ Sbjct: 627 ETMSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AGIRR+EAITG A + Q+ +K++ + +K +V+ +++ + L Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + + ++ I + L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858 Query: 886 DQAIAGVASFLKK 898 + + V ++++ Sbjct: 859 PEMLGSVEGWVRE 871 >gi|254670010|emb|CBA04754.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha153] Length = 885 Score = 869 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 521/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 578 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869 Query: 886 DQAIAGVASFL 896 + + V S+L Sbjct: 870 PEMLVSVESWL 880 >gi|296448225|ref|ZP_06890121.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b] gi|296254265|gb|EFH01396.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b] Length = 897 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 436/900 (48%), Positives = 589/900 (65%), Gaps = 43/900 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IRTTFL+FF +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNQIRTTFLDFFSRNGHEKVASSPLVPLNDPTLMFTNAGMVQFKNVFTGFEKRHYAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKC+RAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+++E L Sbjct: 61 ATSAQKCMRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEGAIELAWTLVSRELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY +D+EA+ LWKKI+G S D+IIRI ++DNFWSM + GPCGPCSEIF+DQG Sbjct: 121 PRERLLVTVYHDDDEAYGLWKKIAGFSDDRIIRIASSDNFWSMGDLGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG P E+G+R++E WNLVFMQ++Q ER LP+ SIDTGMGLER+A +LQ Sbjct: 181 ESVAGGPPGSPDEDGDRFLEFWNLVFMQYDQTAPGERVPLPRPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DIDLF+ L A TG+ G +HRVI DHLR+S+FL+ADG+ P+NEGRGY Sbjct: 241 VHSVFDIDLFRRLTGAVADATGVDAAGPQAASHRVIADHLRASAFLVADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL TEM AYPEL +A+ LI +TL +E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAAEPLMHRLVGALVTEMAQAYPELTRAERLIRDTLLTEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL +LD + L + L+G+ AFKLYDT+G PLD+ +D L +RGL+ +D F Sbjct: 361 QTLARGLAILDEETATLAQGGSLSGETAFKLYDTYGFPLDLTEDALRSRGLS-VDKAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR+ AR G G TE +WF+++E+ GAT+F+GYD Sbjct: 420 TAMARQRAEARKAWAGSGETATESVWFAIEERVGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T IV A++ G G + V+ +QTPFYAE+GGQ+GD G G+ Sbjct: 462 -----TEKSEGIVVALLHDGAETFRLEPGARGAVLLNQTPFYAESGGQIGDIGEMRAKGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKK G+FVH +VE G + ++L L ID+ R + NHSATH+LH AL Sbjct: 517 RFRVTNTQKKLGGLFVHEGVVEEGAITPGLALELEIDHSRRNAVRANHSATHILHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + D LRFD TH KP+T E+ +E N+++ N PV TR+M ++DA Sbjct: 577 VLGDHVAQKGSLVASDRLRFDFTHPKPLTEEEVAEVERIANEVVQDNAPVDTRLMAQDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-------------HSSALCGGTHVSSTGEIM 706 I SGA AL G KY D VRVVS+ G S LCGGTHV TG+I Sbjct: 637 IHSGARALFGEKYGDEVRVVSMGSLSTGQPSTDLAPTDQHHAFSVELCGGTHVRRTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ IVS+ ++ +G+RRIEA T + AR+ L+ L+ +A+ ++V R+ + EE Sbjct: 697 LVSIVSQGAVASGVRRIEAKTAEAARAQLVADSRALREVAALVRVPVDETPARLAALLEE 756 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++L+ A+ K +L + + +I + + +S +D K+LKS++D +K + Sbjct: 757 RKQLERELAEAKRKLAMGGGANGAAPVREIDGIKLFAKAVSGIDPKDLKSLVDEQKKALG 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SG++ + S + KA +++ VT DL +NAVDL R +++ LGG GGGGRP +AQ+GGP+ Sbjct: 817 SGVVAIASASADGKAGIVVGVTADLTTTYNAVDLVRAASEKLGGKGGGGRPDLAQAGGPD 876 >gi|319410810|emb|CBY91198.1| alanyl-tRNA synthetase [Neisseria meningitidis WUE 2594] Length = 885 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY + VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869 Query: 886 DQAIAGVASFL 896 + + V S+L Sbjct: 870 PEMLVSVESWL 880 >gi|304386989|ref|ZP_07369247.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091] gi|304338946|gb|EFM05042.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091] Length = 885 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 369/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ D+ G Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADMARELG-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 578 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869 Query: 886 DQAIAGVASFL 896 + + V S+L Sbjct: 870 PEMLVSVESWL 880 >gi|262369620|ref|ZP_06062948.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046] gi|262315688|gb|EEY96727.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046] Length = 892 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 385/924 (41%), Positives = 520/924 (56%), Gaps = 62/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIREAFLSYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT Sbjct: 61 VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTGEAWLA 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +LY TVY D+EAF +W K GL A +IIRI N DNFW+M +TGPCGPC Sbjct: 121 LPKDKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GGLP E+G+R+IEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK------------YEGNNIVNHRVIVDHL 279 R++ VLQ +NY+IDLF+HL++A+ ++ G+ + +V+ DH Sbjct: 241 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGLDTAALEAEAREKGTPVQYPASLKVVADHA 300 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS SFLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPE Sbjct: 301 RSCSFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLQPLIEVMGQAYPE 360 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L K IE L E+E+F KTL++GL LL+G L+ L ++ G+V FKLYDT+G P D Sbjct: 361 LEAQKARIEAQLLKEEEQFAKTLEQGLKLLEGELAQLK-GSVIPGEVVFKLYDTYGFPTD 419 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + DI R L ID F + QR RAR +G + S+ + G TQF G Sbjct: 420 LTADIARERDLT-IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDG 472 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD G + AI + GE V+E V G + +V +QTP Sbjct: 473 YDATVG-----------------------EGQIIAIYKDGEQVDEVVEGDEALIVLNQTP 509 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE+GGQ+GDTG D ++ D +K FVH IV G ++ ++ T+ Sbjct: 510 FYAESGGQIGDTGIFKNDTGIFEVQDTKKSGG-AFVHQGIVTVGSIKLAQNVEATVKADI 568 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + NHSATHLLH AL ILG HV Q GS + D LRFD + +P++ +L+ IE V Sbjct: 569 RAATARNHSATHLLHAALRQILGEHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLV 628 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTH 698 N + N V T +++ E A A GA L G KY D VRV+S+ + S LCGG H Sbjct: 629 NAEVIANSAVTTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSIIEEKNFSIELCGGIH 688 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TG+I L I SE + AG+RRIEA+TG +A D + ++ LK + + Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAIEVTQKADRDINTINGLLKAQKDQTLE 748 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813 +VE + + LQ + +L + +A + + +D+K L+++ Sbjct: 749 KVEALVDTASSLQKQIEQLNQKLASFQAAELLSQVQTLAGRQTLITTVQNMDAKSLRNLH 808 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D ++ K+++ +I+L G+ + K S++ V +D A D+ + A L GG GGG+P Sbjct: 809 DGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLATEL-GGKGGGKPD 866 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 +AQ G P K +A + ++L+ Sbjct: 867 LAQGGAPLNEKFATVMADLTAWLE 890 >gi|103487205|ref|YP_616766.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256] gi|123253182|sp|Q1GSD9|SYA_SPHAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|98977282|gb|ABF53433.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256] Length = 884 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 442/888 (49%), Positives = 592/888 (66%), Gaps = 37/888 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F GH + PS+ L+P NDPTLMF N+GMVPFKN+FTG EK Y Sbjct: 1 MTSTNDIRRSFLDYFGGAGHHIEPSAPLVPYNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW L+T+ + L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLITQTWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL ++IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 APEKLTATVYHTDDEAFDLWKKIAGLPDERIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG PGS E+G+R++EIWNLVFMQ+EQ ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHVRGGPPGSPEEDGDRFVEIWNLVFMQYEQLPGGERVDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI+AS ++TG++ + + +HRVI DHLR+SSFL+ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDTFKALIEASVELTGVRADEAHRASHRVIADHLRASSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM LLP+L EMG+AYPELI+A+ LI ETL E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLLPSLTAEMGAAYPELIRAQPLIAETLEREEVKFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL LLD + +G+ + L GDVAFKLYDT+G P D+ +D L ++G +D F+ Sbjct: 361 QTLDKGLRLLDEATADMGRGDTLVGDVAFKLYDTYGFPYDLTEDALRSKG-ISVDRAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G +E+IWF L E +G+T+F GY G Sbjct: 420 AAMAQQKAAARAAWKGSGQKASEEIWFDLAETHGSTEFTGYTSTSG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A+V+ G+ VEEA +G +V V+ +QTPFY E+GGQ+GD G Sbjct: 466 ---------EATVIALVRDGQPVEEARAGDEVIVLTNQTPFYGESGGQMGDAGMIATLEG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++D K + H A +E G L+ ++ LT+D + R ++ NHSATHLLH AL Sbjct: 517 AKASVSDTGKPLGRLHTHQAKLEAGTLKVGDTVQLTVDAERRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + D RFD +H K +T+AE+ IE +VN I N PV TR+M +D Sbjct: 577 NRLGGHVTQKGSLVAADRFRFDFSHPKALTAAEIADIEADVNAQIRGNEPVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AIA+GA AL G KY D VRV+++ D +S LCGGTHV + G+I L IVSES++ + Sbjct: 637 AIAAGALALFGEKYGDEVRVLAMGKADDRNYSVELCGGTHVRALGDIALFKIVSESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG+ AR L G+DE LK+ A+ LK S V RV ++ E+ +K + A K Sbjct: 697 GVRRIEALTGEAARQWLNGRDEALKAAAAALKTSPDEVPARVAQLAEQLKKAERELADAK 756 Query: 779 LQL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + ++ DV F++ ++ +D KEL+ +D L+K++ SG+ MLV Sbjct: 757 KALALGGSGGDGGAAAGPAVEQVGDVAFLAQVVDGLDPKELRGTVDGLKKQVGSGVAMLV 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + +ASV + VT+D +AVDL + + LGG GGGGRP MAQ Sbjct: 817 AV-NDGRASVAVGVTDDKTGHHSAVDLVKAAVVALGGQGGGGRPDMAQ 863 >gi|148546681|ref|YP_001266783.1| alanyl-tRNA synthetase [Pseudomonas putida F1] gi|148510739|gb|ABQ77599.1| alanyl-tRNA synthetase [Pseudomonas putida F1] Length = 897 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 375/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 24 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 83 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + + Sbjct: 84 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 143 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 144 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 203 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 204 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 263 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 264 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 321 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 322 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 381 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 382 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 440 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT+F+GYD G Sbjct: 441 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDTTEG------ 487 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+ Sbjct: 488 -----------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDS 530 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 531 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATH 589 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T Sbjct: 590 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 649 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 650 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 705 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 706 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 765 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 766 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 825 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 826 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 879 >gi|94987623|ref|YP_595556.1| alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00] gi|205830129|sp|Q1MP42|SYA_LAWIP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94731872|emb|CAJ55235.1| Alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00] Length = 884 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 369/908 (40%), Positives = 521/908 (57%), Gaps = 37/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M V+ IR FL +F+ H+ +PSSSLIP +DP+L+FTN+GMV FK +FTGQE Y Sbjct: 1 MLTVNDIRQKFLGYFKNYNHQEIPSSSLIPRDDPSLLFTNAGMVQFKKVFTGQETRNYLR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW +T+E +L Sbjct: 61 ATTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQFAWAFITEELNL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + LYIT+Y +D++A+ +W G+ +I R+ DNFWSM +TGPCGPCSEI FDQG Sbjct: 121 SKEFLYITIYKDDDDAYDIWVNTIGVEPSRIYRMGEKDNFWSMGDTGPCGPCSEIHFDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G S + +R++EIWNLVFMQ+EQ ER ILPK SIDTGMGLER+ + Q Sbjct: 181 ETFCCGDNCGIGSCDCDRFLEIWNLVFMQYEQLPSGERVILPKPSIDTGMGLERIVAICQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +K++NYD DLF+ +IQ + G+ Y + RVI DH R+ +F+IADGILP+NEG Sbjct: 241 QKSSNYDTDLFQPIIQYMASIAGVHYKKHEETDIALRVIADHSRAIAFMIADGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + +G +P + + + MG Y EL + + E+E Sbjct: 301 RGYVLRRLIRRAFRFGKQIGMNQPFLYKTVNKVVELMGDIYTELYSRSEFMSRVVFDEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TLD+GL+LL+ L+ L + L GD+AFKLYDT+G PLDI+ DI + +D Sbjct: 361 RFSITLDKGLILLEAELNALKEKNTKELPGDIAFKLYDTYGFPLDIINDIASKK-HFAVD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F ++EQ+ RAR+ G G E + +L E ++FIGY+ L G+ + Sbjct: 420 EANFQHLMQEQKERARSQWKGSGEKRIEACFQTLLEDGMQSEFIGYENLSGTGRI----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V + G +EE + V+ D TPFY +GGQ GD G Sbjct: 475 -----------------VALLDIDGLPIEELPTKSSGYVITDMTPFYGTSGGQTGDIGIL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + Q+ D K A + VH V G + + +L + R + NH+ TH+L Sbjct: 518 STITGKTQVVDTLKPATNLIVHVVTVTSGTILLDQEALLVVSESERLDTARNHTCTHILQ 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L ILG HV Q GS ++P LRFD TH P+T E+ +IE VN II NLP+ M Sbjct: 578 SVLQKILGDHVRQAGSLVSPTRLRFDFTHIAPLTEEEIHAIELQVNTIIMANLPLRVEFM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +++ A+ GA AL KY + VRVV++ + S LCGGTH++STG+ IVSE+ Sbjct: 638 DQQSALEKGAMALFEEKYGNIVRVVTIGS-ENQTASIELCGGTHLTSTGQAGCFIIVSET 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEAITG+ +++ ++L + A+ LK VV +V I E + LQ Sbjct: 697 GIAAGVRRIEAITGRNTLAYIKEYQKELSTTAAILKTKPEKVVEKVTSILSENKNLQKTV 756 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + +I +++ ++ + K L+ +MD ++ K+ SGI+ L Sbjct: 757 DTLESSSLSNQGKHLLDNLTRINNIDVLTANLKNFSLKALRDIMDDIRSKLSSGIVCLAS 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +L+ V++DL F A +L + + G GGGRP AQ+GG N + + Sbjct: 817 TEGT-KVHLLLYVSKDLHHNFTASELIKKIVVPIH-GAGGGRPDQAQAGGTNPSGLSETF 874 Query: 890 AGVASFLK 897 + + L+ Sbjct: 875 ELLKNILE 882 >gi|241765465|ref|ZP_04763432.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN] gi|241364775|gb|EER59764.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN] Length = 874 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 370/909 (40%), Positives = 519/909 (57%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 6 TVADIRKTFLDFFASKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAV 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 66 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 126 DRLLATVYQEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+R+IEIWN VFMQF+ LP +DTGMGLER+A Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + TG+ N + RVI DH+R+++FL++DG++P+N Sbjct: 246 AILQHVHSNYEIDLFDALIKAAGRETGVTD--LNNKSLRVIADHIRATAFLVSDGVIPSN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L MG AYP L + + I E L++E Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGKKTPFFHKLVADLVRLMGDAYPALREQEQRITEVLKAE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ R +D Sbjct: 364 EERFFETLANGMEILDAALD--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERD-VEVD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E+Q+++ARA K+ +L+ A QF GY+ L Sbjct: 421 EAGFKTAMEKQKAQARAAGKF-------KMDKALEYTGAANQFTGYEHL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + AI G +GQ VV D TPFYAE+GGQ+GD G Sbjct: 463 ------------AETAKIVAIYVDGTSAAALKTGQNGVVVLDTTPFYAESGGQVGDEGVI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K +F HH +E G L ++ ++ R NHS THL+H Sbjct: 511 TSGSARFAVGDTLKVKADVFGHHGTLEHGTLNVGDTVQAQVNTAVRAATMRNHSVTHLMH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + D RFD H+ +T+AE++ IE VN+ I N P R+M Sbjct: 571 KALREVLGSHVQQKGSLVNADRTRFDFAHNAAVTNAEIREIERRVNEEILANQPTQARVM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +VSE Sbjct: 631 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG A ++L ++ + A LK + GR+ + E R L+ Sbjct: 685 GVAAGVRRIEAVTGANALAYLQQLEDTVHQAAGTLKAPVAELNGRIGQALEHARALEKEV 744 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L ++ + ++ + D+K L+ MD L+ K+++ I+L Sbjct: 745 AALKGKLASSQGDELVTQAVEVKGLKVLAAALPGADAKTLRDTMDKLKDKLKTAAIVLAA 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT D + R A +L A+ +GG G GG+P MA +GG + +K A+ Sbjct: 805 VDGD-KVQLAAGVTSDTVGRIKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDASKLPAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 ASVTGWVTQ 871 >gi|192362500|ref|YP_001981850.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107] gi|190688665|gb|ACE86343.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107] Length = 875 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 528/911 (57%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F+ GH ++ SSSL+P NDPTL+FTN+GM FK++F G E Y Sbjct: 1 MKSAEIRDAFLKYFESKGHTVVASSSLVPGNDPTLLFTNAGMNQFKDVFLGGETRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTSKAWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + +L++TVY D+EA+ +W G+ A++IIRI N DNFW+M +TGPCGPC Sbjct: 121 IPAEKLWVTVYASDDEAYAIWHNEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ V+Q +NY+IDLF+HL+ A+ + TG + RVI DH+RS SFL++DG+L Sbjct: 241 RISAVMQHVHSNYEIDLFQHLLSAAVEATGTSD--LESKSLRVIADHIRSCSFLVSDGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG +P L+ AL MG AYPEL + + IE L Sbjct: 299 PSNEGRGYVLRRIIRRAIRHGNKLGQKQPFFHKLVKALAEVMGDAYPELHKNRAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTLD+G+ +L+ L+ L EI G + F LYDT+G P+D+ DI RGL Sbjct: 359 LQEEEQFEKTLDKGIAVLEDALAKLSGTEI-PGKLVFTLYDTYGFPVDLTNDIARERGLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID ++ A+ + +GT + + ++ AT+F+GY L Sbjct: 418 -IDQDGYDAAMA------EQRARARAAGTFKVDYSAVGLDLPATEFLGYRQL-------- 462 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+++ + V+ V G VV D+TPFYAE+GGQ GD Sbjct: 463 ---------------AEQGKVVALIKDSKKVDRLVEGDDGVVVLDRTPFYAESGGQAGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G RL++ D +K +H V +G + +D R+ ++NHSATH Sbjct: 508 GYLEQGGNRLEVRD-CQKQANAHLHLVHVLQGAISVGDVFGAKVDANVRQATALNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV+Q GS + + LRFD +H + +T +LK+IE VND + N V T Sbjct: 567 LMHAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVTPEQLKTIETLVNDQVRANSAVAT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + + A A GA AL G KY D VRV+++ S LCGGTHV+ TG+I + I Sbjct: 627 ELCDMDTAKAKGAMALFGEKYGDTVRVLTMGD----GFSVELCGGTHVARTGDIGVFRIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES + AGIRRIEAITG +A + + + + A +K ++ N++ +++ + + RKL+ Sbjct: 683 SESGVAAGIRRIEAITGTKALALFDQVESLVDAAARSIKANRDNLLEKLDALVAQNRKLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A K +L + + ++ + D++ L+ +D + K+ S +++ Sbjct: 743 KDLAGLKTRLATAGSGDVLSQAQDVNGIKVLALNLEGADARSLRDTVDQFKNKLGSAVVL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + + K S++ VT+D+ + A DL A +GG G GGRP MAQ GG + + Sbjct: 803 LAAVEND-KVSLVAGVTQDITAKVKAGDLMAHVAGQIGGKG-GGRPDMAQGGGTDVARLA 860 Query: 887 QAIAGVASFLK 897 A+A V ++ Sbjct: 861 DALASVLPWVN 871 >gi|261379016|ref|ZP_05983589.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685] gi|269144550|gb|EEZ70968.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685] Length = 874 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 369/912 (40%), Positives = 519/912 (56%), Gaps = 58/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVHSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLS 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + A + + K L T+F GY Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V+E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDGIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVECRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKSL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + + ++ I + L+ ++ L K + I+ Sbjct: 742 EKDLAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIV 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858 Query: 886 DQAIAGVASFLK 897 + + V +++ Sbjct: 859 PEMLGSVEDWVR 870 >gi|59801613|ref|YP_208325.1| hypothetical protein NGO1254 [Neisseria gonorrhoeae FA 1090] gi|75432448|sp|Q5F7C4|SYA_NEIG1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|59718508|gb|AAW89913.1| putative alanyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] Length = 874 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|255021551|ref|ZP_05293594.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] gi|254968939|gb|EET26458.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] Length = 880 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 376/906 (41%), Positives = 540/906 (59%), Gaps = 40/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +IR FL+FF GHE++PSS L+P NDPTL+FTN+GMVPFK+ F G E+ Y+ Sbjct: 1 MRSQAIRQAFLDFFAARGHEIVPSSPLVPRNDPTLLFTNAGMVPFKDTFLGLEQRPYRRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK I AW LT+ L Sbjct: 61 VSAQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGYAWTFLTEVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180 RL++TV+ ED EA +W + G+ + R DNFWSM +TGPCGPCSEIF+D Sbjct: 121 PERLWVTVFAEDREAEDIWLREMGIDPARFSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E G +G+RYIEIWNLVFMQ+++ + LPK S+DTGMGLER+A VLQ Sbjct: 181 EIPGGPPGSPDADGDRYIEIWNLVFMQYDRDSSGRLTPLPKPSVDTGMGLERLAAVLQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNYD DLF+ LIQA+ ++G Y + + RV+ DH+R+ SFL+ADG+LP+NEGRG Sbjct: 241 HNNYDTDLFQPLIQAAADISGKVYGADPAADTSLRVLADHVRACSFLMADGVLPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + R LG + L+P L + MG AYPEL +A+ I+ LR E+ RF Sbjct: 301 YVLRRIIRRAVRHGRKLGLGDIFFHRLVPPLVSVMGEAYPELRRAERDIQGHLRREEARF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL+RGL LL+ + L + G+V F+L DT+G P+D+ DI RGL +D+ F Sbjct: 361 RETLERGLELLEEAIGGLAPGAPIPGEVIFRLSDTYGFPVDLTADIARERGL-ALDMPGF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 AL EQR R+RA +G G ++++ L + AT+F+GY Sbjct: 420 EAALAEQRQRSRAAWVGSGEVKADRLYHDLAMELPATEFLGY------------------ 461 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + V A+++ G+ V+ +G+ V+ DQTPFY E+GGQ+GD G Sbjct: 462 -----GGCSGAGRVLALIRDGQRVDVLRAGETGSVILDQTPFYGESGGQVGDRGLLTDAA 516 Query: 539 I-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 R + D QK + +H VE G LR + +D R + +HSATHLLH AL Sbjct: 517 GLRFVVQDTQKPVASLHLHLGRVESGELRLGHIVHAEVDSDARAATAAHHSATHLLHAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LGSHV Q GS +TP+ LRFD +H +P+T A+L+S+E+ VN + N+ +++ Sbjct: 577 RTLLGSHVQQKGSLVTPERLRFDFSHPEPLTLAQLQSLENWVNAAVRANVVADVQVLPIA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A + GA AL G KY + VRV+ + G +S CGGTHV +TG+I I++ES + Sbjct: 637 QAQSLGALALFGEKYGEEVRVLRL-----GDYSLEFCGGTHVQATGDIGCFKILAESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA G A + + +++L++ A+ L V+ + R+ + E R+L+ + Sbjct: 692 AGIRRIEAAAGAAAIAAVQLDEQRLRAAAALLHVAPAELDQRLAQTLERQRQLEKELERL 751 Query: 778 KLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L + + IA V + I +D K L+ ++D L+ +I GI++L G+ Sbjct: 752 RQKLAAQAGERLASAVEDIAGVPVLVQQIDGMDGKGLRELVDRLRSQIPHGILLLAGVQN 811 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K +++ V+++L DR A L A+V+ GG GGGR +AQ+G + + A A Sbjct: 812 D-KVALIAAVSKELTDRVAAGPLVHAVAEVM-GGKGGGRADLAQAGAEHPEQLTAAFALA 869 Query: 893 ASFLKK 898 ++L++ Sbjct: 870 RAWLEQ 875 >gi|194097831|ref|YP_002000876.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] gi|239998317|ref|ZP_04718241.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|240014513|ref|ZP_04721426.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI18] gi|240113728|ref|ZP_04728218.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|240116471|ref|ZP_04730533.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|240121035|ref|ZP_04733997.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1] gi|240125067|ref|ZP_04737953.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] gi|254494482|ref|ZP_05107653.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268599798|ref|ZP_06133965.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268602141|ref|ZP_06136308.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268683663|ref|ZP_06150525.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] gi|193933121|gb|ACF28945.1| AlaS [Neisseria gonorrhoeae NCCP11945] gi|226513522|gb|EEH62867.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268583929|gb|EEZ48605.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268586272|gb|EEZ50948.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268623947|gb|EEZ56347.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] Length = 874 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|260441692|ref|ZP_05795508.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2] Length = 874 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|124267510|ref|YP_001021514.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1] gi|205830143|sp|A2SI90|SYA_METPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|124260285|gb|ABM95279.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1] Length = 875 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 367/913 (40%), Positives = 518/913 (56%), Gaps = 56/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ FL+FF+ GH+++ SS ++P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKASEIRSAFLKFFESKGHQIVASSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L Sbjct: 61 TTAQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIAYAWELLTEVFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+++W K G+ A++I+RI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLWVTVYAEDDEAYEIWNKQVGVPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D E G E+G+RYIEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHKLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGI 290 VLQ +NY+IDLF L+ A++Q + + +VI DH+R+ SF I DG+ Sbjct: 241 TAVLQHVHSNYEIDLFVALLAAAKQAVDAAGAGDSDKDSPSLKVIADHIRACSFTIVDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI RR + + LG +P L+ L +MG AYPEL +A+ + E Sbjct: 301 IPGNEGRGYVLRRIARRGIRHGYKLGARKPFFHTLVAELVRQMGEAYPELARAEARVTEV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L+ E+ERF +T+ G+ +L+ L+ G + L+G+ AFKL+DT+G PLD+ D+ RG+ Sbjct: 361 LKQEEERFFQTIANGMEILESALA--GGAKTLDGETAFKLHDTYGFPLDLTADVCRERGV 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+ A++ QR +ARA + L+ AT F GY+ L Sbjct: 419 T-VDQAGFDAAMKRQREQARAAGKFKMAAG-------LEYAGAATTFHGYEHLVHEG--- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S V A+ G V A +G +V D TPFYAE+GGQ+GD Sbjct: 468 -------------------SKVTAVYVDGSAVPSAKAGDDAVIVLDHTPFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G R+ + D QK +F HH V G +R L +D + R + NHS T Sbjct: 509 GGELRNGTSRVIVEDTQKIQADVFGHHGRVVEGEIRVGDVLNARVDGEQRARTVRNHSVT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG HV Q GS + + RFD H+ P++ A++ +E VN I N P Sbjct: 569 HLMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPMSDAQIAKVEAIVNAEILANAPTQ 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 R++ E+A GA L G KY D VRV+ + S LCGGTHV TG+I L + Sbjct: 629 ARVLPMEEAQKLGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVQRTGDIGLFKV 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+ES + AGIRR+EAITG A +++ + + LA LK + V GRV + E+ R L Sbjct: 683 VAESGVAAGIRRVEAITGDNALAYVQQLEGTVAGLAGALKAAPAEVPGRVAAVLEQLRTL 742 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A K +L + + ++ + D+K L+ +D L+ K++S I Sbjct: 743 EKELAALKGKLASSQGDGLLAQAVDVKGLKVLAARLEGADAKALRDTLDQLKNKLKSAAI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K + VT D R A +L A+ +GG G GG+P +A +GG + Sbjct: 803 VLA-VVEGGKVQLAAGVTADATARVKAGELVNFVAQQVGGKG-GGKPDLAMAGGTDPAGL 860 Query: 886 DQAIAGVASFLKK 898 A+A VA ++ + Sbjct: 861 GAALASVAGWVGE 873 >gi|310823694|ref|YP_003956052.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] gi|309396766|gb|ADO74225.1| Alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] Length = 897 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 370/919 (40%), Positives = 534/919 (58%), Gaps = 56/919 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF+ GH + SS L+P NDPTL+FTN+GMV FK++FTG+EK Y T Sbjct: 6 TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 66 TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 125 Query: 123 RRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL +TV++ D EAF+LW + G+ D+I+++ DNFW+M +TGPCGPCSEI Sbjct: 126 ERLAVTVFNGEQGVPWDAEAFELWAQQ-GVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 184 Query: 177 FDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQ-ERFILPKMSIDTGM 228 + QG+ IP G + + +R++EIWNLVFMQFE++ K LPK SIDTG Sbjct: 185 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 244 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A+V+Q K +NYD DLF+ ++ ++ G Y + RVI DH R+++FLI+D Sbjct: 245 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 304 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRRIMRRA+ + LLG + ++ + M AYPEL + + + Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 364 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E R E+E F +TLDRG+ L+D ++ L + + L+G F L+ T+G P D+ Q IL Sbjct: 365 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 424 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 RG D+ F + +E + + G G ++ +L E+ G ++F+ Sbjct: 425 ERGFDA-DLDGFWKEME--KEADKNKFGGSGEKAISTVYQTLAERLGTSEFL-------- 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V+AI++ G V +A +G+ VE+V D+TPFY E+GG Sbjct: 474 -------------GYEGEGHEGEGSVRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 520 Query: 527 QLGDTGCAIGDGIRLQIT--DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q GDTG G G + DVQ+ G+ VHH V+ G +T + +D Q R+ + Sbjct: 521 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 580 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV Q GS + PD LRFD +H T +L+ +ED VN + Sbjct: 581 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 640 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N TR+M ++A SGA A+ G KY + VRVV+V S+ LCGGTHV +G+ Sbjct: 641 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHP-----QSTELCGGTHVRRSGD 695 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SE I +G+RRI A+TG A +L + +L+ A LK S + RVE Sbjct: 696 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 755 Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + ++L+ + ++ ++ + ++ + D K + + D L+ + Sbjct: 756 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 815 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 I+SG++ +G K+ KA +L+ VT+D++++ +A L R AK +GG G GG+ MAQ+G Sbjct: 816 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEVGGKG-GGKADMAQAG 873 Query: 879 GPNGNKADQAIAGVASFLK 897 GP+ +K A+ + K Sbjct: 874 GPDASKLPAALDKLYELTK 892 >gi|302342573|ref|YP_003807102.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] gi|301639186|gb|ADK84508.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] Length = 884 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 372/908 (40%), Positives = 535/908 (58%), Gaps = 43/908 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R FL +F GH+++ SS L P +DP+L+FTN+GMV FK +F GQE+ Y Sbjct: 4 SGNELRGKFLAYFASKGHQVVASSPLAPKDDPSLLFTNAGMVQFKQVFLGQEQRPYTRAA 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC RA GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ A+ AW+LLT F LD Sbjct: 64 TSQKCFRASGKHNDLENVGRTPRHHTFFEMLGNFSFGDYFKQDAVTFAWELLTVGFGLDP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L+++V+ D+EA +LW+ G+ ++I+R+ DNFWSM +TGPCGPCSEI D G Sbjct: 124 EKLWVSVHHSDDEAAELWQSEVGVRPERIVRLGDKDNFWSMGDTGPCGPCSEIHIDMGPE 183 Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + G P + RY+E+WNLVFMQ+ + + LPK SIDTGMGLER+A V+Q Sbjct: 184 MGCGRPDCAVGCDCNRYLELWNLVFMQYNRDASGQTTPLPKPSIDTGMGLERIAGVVQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NYD DLF +I+ + Q+T Y ++ ++ RVI DH R+ +FL+ADGILP+NEGRG Sbjct: 244 RSNYDSDLFTPIIERACQITQTAYGQSDQADISLRVIADHARACAFLVADGILPSNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA + R LG +P + + + EM AYP L A+ +++ + SE+ERF Sbjct: 304 YVLRRILRRAARHGRKLGAQKPFLHQVAMKVIDEMMGAYPALGDARAFVDKVVTSEEERF 363 Query: 359 GKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TLD GL LL + + L G+VAFKLYDT+G P+D+ + I L G+D Sbjct: 364 NETLDTGLKLLAEAIEEAKAKGQTALPGEVAFKLYDTYGFPVDLTRTICEEEAL-GVDEP 422 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ +Q++R+RA G G L+ K T F GYD L G Sbjct: 423 GFEAAMGQQKTRSRASWKGSGEEGLSGPLAELRAKGFKTAFTGYDGLEG----------- 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V A++ G++VE +GQK +V DQTPFY E+GGQ GD+G A G Sbjct: 472 ------------QGQVVALIVDGQMVERVGAGQKALLVCDQTPFYGESGGQAGDSGRAEG 519 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++ K + H V G L L LT+D+ R + + NH+ATHLLH A Sbjct: 520 PAGKAVVSTASKPGGDMVAHEITVSEGYLAVGERLNLTVDHGPRGETASNHTATHLLHAA 579 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS ++P LRFD +H + +T ++ +E VN+ + N+ V M Sbjct: 580 LRQVLGDHVKQAGSMVSPQRLRFDFSHFEAMTPQQMGQVEAMVNEGVLANIAVTVTEMPA 639 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A+ SGA AL G KY D VRVV + S LCGGTHV TG+I L +V+ESS+ Sbjct: 640 EEALGSGAMALFGEKYGDTVRVVEIPG-----LSKELCGGTHVKRTGDIGLFKLVAESSV 694 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RR+EA+TG+ A + + +++L A LK + RV ++ ++ + + Sbjct: 695 AAGVRRVEALTGRAALAAVRAMEDELHKAAGLLKARPTELAERVAKLMATLKEREREVEQ 754 Query: 777 RKLQLNVE----DLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L DL + D + + +K L+++ D + +++ SG+++L G Sbjct: 755 LKAKLAGGGGGRDLLAGVVNHGDARVLVQKVEVDSAKALRALSDEIIERLGSGVLVL-GA 813 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + E KA +L V++DL RF+A ++ + A ++GGGG GGRP MAQ+GG N + DQA+ Sbjct: 814 AAEGKAFLLARVSKDLQGRFHAGNIVKELAPLVGGGG-GGRPDMAQAGGQNPDALDQAME 872 Query: 891 GVASFLKK 898 ++ L + Sbjct: 873 RASAMLAE 880 >gi|167034974|ref|YP_001670205.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1] gi|166861462|gb|ABY99869.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1] Length = 897 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 373/896 (41%), Positives = 526/896 (58%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 24 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 83 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + + Sbjct: 84 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 143 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 144 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 203 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 204 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 263 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 264 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 321 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 322 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 381 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 382 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 440 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT+F+GYD Sbjct: 441 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATE------- 486 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDT Sbjct: 487 ----------------AQGKIIALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 530 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 531 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 589 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + ++K +ED VN + +N V T Sbjct: 590 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVET 649 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 650 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 705 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 706 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 765 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 766 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 825 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 826 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 879 >gi|240016958|ref|ZP_04723498.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA6140] Length = 874 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|268685404|ref|ZP_06152266.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268625688|gb|EEZ58088.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 874 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|317163606|gb|ADV07147.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 885 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 12 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 72 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 192 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 370 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 428 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 472 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 517 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 518 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 638 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 812 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 869 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 870 PEMLASAEGWL 880 >gi|293399698|ref|ZP_06643850.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62] gi|291609949|gb|EFF39072.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62] Length = 881 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 68 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 468 --------------RQTESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 866 PEMLASAEGWL 876 >gi|205830254|sp|B1JCG9|SYA_PSEPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 377/896 (42%), Positives = 530/896 (59%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ V+Q +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RISAVMQHVHSNYEIDLFQNLLSAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT F+GY+ G Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDTATDFVGYNATEG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDT Sbjct: 465 -----------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 508 GYLQSGAVRFDVQDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + +T A++K++ED VN + +N PV T Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I + E A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 627 EITDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856 >gi|317050904|ref|YP_004112020.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5] gi|316945988|gb|ADU65464.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5] Length = 893 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 377/909 (41%), Positives = 537/909 (59%), Gaps = 45/909 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N +R FL +F+ GH+++ SS LIP +DPTL+FTN+GM FKNIF G EK Y Sbjct: 11 MNAQQVRQQFLSYFESKGHKVVASSGLIPFDDPTLLFTNAGMNQFKNIFLGNEKRDYNRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ +T+ LD Sbjct: 71 ATAQKCVRAGGKHNDLENVGVTARHHTFFEMLGNFSFGDYFKREAIEYAWEFITEVMKLD 130 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+++V+ ED+EA +W+ G+ A++I+R DNFW M ETGPCGPCSEI +DQG Sbjct: 131 RSRLWVSVFREDDEALAIWRDHIGVPAERILRCGEKDNFWQMGETGPCGPCSEIHYDQGP 190 Query: 182 CIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +P GG G E +RY+EIWNLVFMQ+++Q LPK SIDTGMGLER+A V+Q Sbjct: 191 DVPCTEGGPCGVECECDRYLEIWNLVFMQYDRQPDGTLVPLPKPSIDTGMGLERLAAVVQ 250 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANE 295 +T+NY DLF L+ GM Y + V+ RVI DHLR+S+FLI+DG +P+NE Sbjct: 251 GETSNYHTDLFLPLLNRIAADCGMTYTRSASHQDVSMRVIADHLRASTFLISDGAIPSNE 310 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRIMRRAM +A LG EP M L+ + G A+PE+++ + ++EE + E+ Sbjct: 311 GRGYVLRRIMRRAMRHANQLGKKEPYMYSLVCLMEEHYGEAFPEIVKNRAMVEEIIYQEE 370 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 RF TLD GL +L+ +++ L K L+G AFKLYDT+G PLD+ DIL RG+ + Sbjct: 371 RRFANTLDHGLAILEEMVAGLQKSAQVALDGQSAFKLYDTYGFPLDLTVDILEDRGIT-V 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+EEQ+ RARA + S T+ + L E +F GYD L Sbjct: 430 DEAGFYAAMEEQKVRARASWKAVASVTSSEDLR-LIESRHQQEFSGYDFLSAKA------ 482 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S++ + Q + + +G++ ++ D+TPFYAE+GGQ+ DTG Sbjct: 483 ----------------SVIGLLDLQENSLSQVRAGEEAWLLLDKTPFYAESGGQVADTGV 526 Query: 534 AIGDGIRLQITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 DG + +K+ G+ +H +V +G ++ T++ + RR +++NHSATHL Sbjct: 527 VATDGGDIFEVRSVRKSIGGLHLHRGVVSQGRFSAGDAVTATVNSRRRRNITLNHSATHL 586 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL + +G HV Q GS + LRFD TH K +T EL+ +ED VN + N V Sbjct: 587 LHAALKSTVGEHVRQAGSLVEDGKLRFDFTHWKGLTPEELQGVEDQVNAQVMANHAVRKE 646 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+A GA AL KY D VRV+++ G +S LCGGTHV +TG+I L I+S Sbjct: 647 LMTLDDAVARGATALFDEKYGDDVRVITM-----GDYSMELCGGTHVDATGQIGLFKILS 701 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES+I AG+RRIEA TG A + + + A LK + ++E++ E R+L+ Sbjct: 702 ESAIAAGVRRIEATTGPGALQVVRDLQKTVGDAARMLKTRPEELCAKIEKLLEGNRQLEK 761 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +++ + S +++ V + +ELK ++D+ + ++ ++ L Sbjct: 762 QQRELQEKMSARETSTLQEQVEEVSGVKVLLQSFEGKSVEELKQIVDSAKHQLGEVVVAL 821 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K ++ V+E L R A DL ++ A GGGG GG+P AQ+GG K + Sbjct: 822 ASVV-DGKVLFVVGVSEALSQRVRAGDLVKILATTCGGGG-GGKPTFAQAGGREPGKIAE 879 Query: 888 AIAGVASFL 896 A+ L Sbjct: 880 ALQKAREHL 888 >gi|323699014|ref|ZP_08110926.1| alanyl-tRNA synthetase [Desulfovibrio sp. ND132] gi|323458946|gb|EGB14811.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans ND132] Length = 879 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 352/906 (38%), Positives = 522/906 (57%), Gaps = 40/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FLE+F++NGH ++ SS L P +DP+L+FTN+GMV FK +F GQEK Y Sbjct: 1 MKANEIRQRFLEYFERNGHTIVESSPLTPKDDPSLLFTNAGMVQFKKLFLGQEKRDYIRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT+E LD Sbjct: 61 TTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFCWQFLTEELKLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLYIT+Y +D+EA +LW+K++G+ ++I R+ DNFWSM +TGPCGPCSE+ +DQGE Sbjct: 121 KSRLYITIYKDDDEAGELWRKVAGVPEERIYRLGEKDNFWSMGDTGPCGPCSEVHYDQGE 180 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + +R++EIWNLVFMQ++Q R LP+ SIDTGMGLER+A V+Q Sbjct: 181 EVGCGPNCGIGKCDCDRFLEIWNLVFMQYDQAEDGTRTNLPRPSIDTGMGLERIAAVVQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NY+ DLF+ +I+ + + G+KY + +VI DH R+ +FLI D +LP+NEGR Sbjct: 241 VHSNYETDLFQSIIKYTADLAGVKYRESEEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GY+LRR++RRA + +L+G T + + +MG Y EL + + + E +R E+E Sbjct: 301 GYILRRLIRRAYRFGKLMGLTGTFLWKTASKVIDDMGGHYKELEETRNFMVEVVRGEEES 360 Query: 358 FGKTLDRG--LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTLD+G ++ + I+ G+ FKLYDT+G P+D + + + G+D Sbjct: 361 FAKTLDKGLEMLEEELAELKKAGAAIVPGETTFKLYDTYGFPID-IVRDVAEQQGMGVDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ ++EQ+ R++A G G ++ +L E+ ++F GY+ + + Sbjct: 420 AEFDKFMQEQKQRSKAAWKGSGEKDVASVFQTLLEQDVTSEFSGYETMADQSAIAYV--- 476 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + +GE+V+E +G+ +V + TPFY E+GGQ+GDTG Sbjct: 477 -------------------LTPEGEVVDELKAGESGWLVAEVTPFYGESGGQVGDTGAIA 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + D K ++ + H +V G+L+ + L +D R NH++THLLH Sbjct: 518 ARNGKADVLDTVKPSKNLTAHKIVVSEGVLKPGDAAFLNVDRSQRLATMRNHTSTHLLHA 577 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H Q GS + PD LRFD TH K ++ E+ +E VN I + +PV +M+ Sbjct: 578 ALQKVLGDHAKQAGSLVGPDRLRFDFTHIKGLSPEEIAEVEKLVNQAIFEAIPVTREVMS 637 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A GA AL G KY D V V+ V S CGGTH+ +TG I SES Sbjct: 638 IEAAQAKGATALFGEKYGDTVSVIEVPG-----VSMEFCGGTHLDNTGIAGSFVITSESG 692 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA TG A + L + E + LK ++ +V ++ ++ + + Sbjct: 693 VAAGIRRIEAATGHNAVAWLNERREAASEAGAMLKAQPADLPKKVRDLQQQVKDMNREMK 752 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L ++ V ++ + + + MDAL+ K+ SG+I L+ Sbjct: 753 SLQAKLASGAGRDMMSEVEELNGVKVLAVKVDAPNMGVMLEQMDALRSKLPSGVICLIAP 812 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 ++ K SV + VT+DL RF A DL + A +GGGG GGRP +A++GG N D+A+A Sbjct: 813 HEDGKVSVALSVTKDLHSRFKAGDLIKPVAGEVGGGG-GGRPDLARAGGSNPEGIDKALA 871 Query: 891 GVASFL 896 + + Sbjct: 872 KLRELI 877 >gi|26991160|ref|NP_746585.1| alanyl-tRNA synthetase [Pseudomonas putida KT2440] gi|37999403|sp|Q88EI8|SYA_PSEPK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24986204|gb|AAN70049.1|AE016644_3 alanyl-tRNA synthetase [Pseudomonas putida KT2440] Length = 874 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 376/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT+F+GYD G Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATEG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDT Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGEGEEGVVVLDRTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVTSGALVIGSPVEAKVDADVQHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856 >gi|268594178|ref|ZP_06128345.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|268547567|gb|EEZ42985.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] Length = 881 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 68 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 866 PEMLASAEGWL 876 >gi|291045073|ref|ZP_06570781.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2] gi|291011076|gb|EFE03073.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2] Length = 881 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 68 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 866 PEMLASAEGWL 876 >gi|240079700|ref|ZP_04724243.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19] Length = 874 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|240122334|ref|ZP_04735290.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268680920|ref|ZP_06147782.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268621204|gb|EEZ53604.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332] Length = 874 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|205830257|sp|A5W0D9|SYA_PSEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 375/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT+F+GYD G Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDTTEG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+ Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856 >gi|313668028|ref|YP_004048312.1| alanyl-tRNA synthetase [Neisseria lactamica ST-640] gi|313005490|emb|CBN86926.1| alanyl-tRNA synthetase [Neisseria lactamica 020-06] Length = 874 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 517/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF++L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQNLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 PANEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L + T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTEATVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQDQERLVKDIITETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + I+ Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIV 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEKL 858 Query: 886 DQAIAGVASFL 896 I + ++ Sbjct: 859 PAMIDSMKDWV 869 >gi|325271425|ref|ZP_08137952.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51] gi|324103458|gb|EGC00778.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51] Length = 874 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 375/896 (41%), Positives = 527/896 (58%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELTSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLQ-GAVVPGDVVFKLYDTYGFPMDLTADIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT+F+GYD G Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATEG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+ Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGVGEQGVVVLDRTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 508 GYLQAGAARFDVRDTTKTGG-AFLHHGVVTSGALLIGAPVEAKVDADVQHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + +LK +ED VN + +N PV T Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQLKQLEDIVNREVRKNTPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+++ GG S LCGG H TG+I L I+ Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLTM----GGDFSVELCGGIHAKRTGDISLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856 >gi|317154429|ref|YP_004122477.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316944680|gb|ADU63731.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 879 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 369/906 (40%), Positives = 523/906 (57%), Gaps = 40/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FLE+FQ+N H ++ SS LIP +DPTL+FTN+GMV FK +F GQEK Y Sbjct: 1 MHAAEIRQRFLEYFQENNHAIVESSPLIPKDDPTLLFTNAGMVQFKRLFLGQEKREYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT+E L Sbjct: 61 TTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRYCWQFLTEELKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLYIT+Y +D+EA +LW+K++G+ ++I R+ DNFWSM +TGPCGPCSE+ FDQGE Sbjct: 121 KDRLYITIYKDDDEAGELWQKVAGVPIERIYRLGEKDNFWSMGDTGPCGPCSEVHFDQGE 180 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + +RY+EIWNLVFMQ++Q R LP+ SIDTGMGLER+A V Q Sbjct: 181 HVGCGPECGIGKCDCDRYLEIWNLVFMQYDQAEDGTRTPLPRPSIDTGMGLERIAAVCQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NY+ DLF+ +I+ + ++ G+KY N +VI DH R+ +FLI D +LP+NEGR Sbjct: 241 VASNYETDLFQSIIRYTAELAGVKYRENQEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GY+LRR++RRA + +L+G TEP + + +MG + EL +K + E +R E+E Sbjct: 301 GYILRRLIRRACRFGKLMGLTEPFLWKTASKVVDDMGGHFSELRDSKEFMIEVVRGEEEG 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTLD+GL +L+ L+ L + I+ GD AF+LYDT+G P+DI++D+ +G++ +D Sbjct: 361 FAKTLDKGLDMLEAELAELTAAKAAIVPGDTAFRLYDTYGFPIDIVRDVAERQGMS-VDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ ++EQ+SR++A G G ++ +L E+ + F GY+ + + Sbjct: 420 PGFDALMQEQKSRSKAAWKGSGDKDVAAVFHTLLEQGITSGFTGYETMADQSEITHVLSP 479 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 G +VE +G VV TPFY E+GGQ GDTG Sbjct: 480 A----------------------GAVVERLAAGDTGWVVTRSTPFYGESGGQTGDTGEIA 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R +TD K ++ + H + +G L+ S+ LT+D R NH+ THLLH Sbjct: 518 ASSGRGAVTDTVKPSQSLTAHKVEMAQGELKPGNSVFLTVDRGQRLATMRNHTVTHLLHA 577 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H Q GS + PD LRFD TH K +T E+ +E VN I +PV +M+ Sbjct: 578 ALQKVLGDHARQAGSLVGPDRLRFDFTHIKGLTVEEIGRVETLVNQSILDAIPVSREVMS 637 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A GA AL G KY D V V+ V S CGGTH+ +TG IVSES Sbjct: 638 IEQAQTKGATALFGEKYGDTVSVIEVPG-----VSMEFCGGTHLDNTGIAGSFVIVSESG 692 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA TG A ++ + +S LK + RV + ++ + + Sbjct: 693 VAAGIRRIEAATGGNAIAYFNERRAAAAEASSMLKAQPAELPARVRALQQQVKDMAREMK 752 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + +L +I V ++ + D + MDAL+ K+ S I+ LV Sbjct: 753 QLQTRLASGTGRDMLAEAQQIGGVTVLAVEVEAPDMNVMLEQMDALRSKLPSAIVCLVAG 812 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K SV + VT+DL RF A +L + A +GGGG GGRP +A++GG + + A+A Sbjct: 813 HADGKVSVALSVTKDLHGRFKAGELIKPVAAEVGGGG-GGRPDLARAGGTDASGIKNALA 871 Query: 891 GVASFL 896 + + Sbjct: 872 KLKELV 877 >gi|298529109|ref|ZP_07016512.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298510545|gb|EFI34448.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 882 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 387/909 (42%), Positives = 559/909 (61%), Gaps = 41/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR FL+FFQ N H ++PSSSLIP +DP+L+FTN+GMV FK +F GQEK Y Sbjct: 1 MLSAAEIREKFLKFFQDNHHTVVPSSSLIPADDPSLLFTNAGMVQFKKVFLGQEKRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKERAI LAW LT+E L Sbjct: 61 AVTSQKCLRVGGKHNDLENVGRTRRHHTFFEMLGNFSFGDYFKERAIDLAWTFLTRELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L+IT++ +D++A LW++++G+S D+I R+ DNFWSM +TGPCGPCSE+ +DQG Sbjct: 121 ERDKLFITIFADDDDAHGLWQEVAGVSPDRIYRLGEKDNFWSMGDTGPCGPCSEVLYDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + +RY+EIWNLVFMQ+++ + LP+ SIDTGMGLER++ V Q Sbjct: 181 EGMSCGPDCAIGVCDCDRYLEIWNLVFMQYDRDQEGNLNPLPRPSIDTGMGLERISAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +NYD DL K LI + + +G +Y + ++ V VI DH RSS+F+IADGILP+NEG Sbjct: 241 GVYSNYDTDLLKSLITDTARKSGKEYGRDRDDDVALAVIADHARSSAFMIADGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGY+LRR++RRA + R LG EP + + + +M AYPEL + + + +R E+E Sbjct: 301 RGYILRRLIRRAFRFGRHLGLAEPFLHQTVQVVVQDMSMAYPELEKGRDFMVRVIRQEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL++GLVLL+ L L ++ + G+ AFKLYDT+G PLDI+ DI RG + +D Sbjct: 361 RFSETLEKGLVLLEEELKKLESLQVNTVPGETAFKLYDTYGFPLDIVNDIAEKRGFS-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + +++QR RARA G G ++ SL+ + T F+GYD L+ + Sbjct: 420 EAGFQECMQDQRQRARAAWKGSGDAGLGEVLSSLEGELPQTSFVGYDRLQDQGEI----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V + Q+G E G+K +V +TPFYAE+GGQ+GD G Sbjct: 475 -----------------VLLVDQEGRSREALSQGEKGWLVASRTPFYAESGGQVGDRGRI 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + D Q +A G+ H V RG + + LT+D R + NH+ATHLLH Sbjct: 518 QAARGQAMVRDTQDQAAGVVAHEVEVSRGEVHKGDVVDLTVDEGRRVATARNHTATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + LRFD TH + +T+ E++ IE+ VN I + V R+M Sbjct: 578 LALRRVLGEHVHQAGSLVDEKRLRFDFTHIQALTAEEMERIEEEVNAAILSDYQVQVRVM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A+ GA AL G KY D+VRVVSV G S LCGGTH+ ST + +VSES Sbjct: 638 DYSQAVQEGAIALFGEKYTDKVRVVSV-----GNISMELCGGTHLDSTAQAGTFCLVSES 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ +G+RRIEA+TG A ++ G + + SL LKV+ +V +V+ + E+ R+L + Sbjct: 693 AVGSGMRRIEALTGWDALNYWRGMRKSVTSLQETLKVAPDQLVDKVQALQEQMRELAREN 752 Query: 775 AKRKLQLNVE---DLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 +++ E D++ K + V ++ + D + L+S+MD ++ K+ +G+ ML G Sbjct: 753 KALSQKISAEQGRDIASEKKMVGRVPLVARKVDVGDVEGLRSLMDDIRSKLDTGVAML-G 811 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K ++L+ V++DL + F A +L + AK + GG GGGRP +AQ+GG + D+AI Sbjct: 812 TRNKGKPTLLLYVSKDLHENFTAPELIKEVAKEIKGG-GGGRPDLAQAGGSDAQGLDRAI 870 Query: 890 AGVASFLKK 898 + L + Sbjct: 871 ERLEEILAE 879 >gi|240117118|ref|ZP_04731180.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268602805|ref|ZP_06136972.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268586936|gb|EEZ51612.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1] Length = 874 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 858 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 859 PEMLASAEGWL 869 >gi|313497736|gb|ADR59102.1| AlaS [Pseudomonas putida BIRD-1] Length = 874 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 375/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT+F+GYD G Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATEG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+ Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856 >gi|240127048|ref|ZP_04739709.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 881 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 68 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 865 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 866 PEMLASAEGWL 876 >gi|260427849|ref|ZP_05781828.1| alanyl-tRNA synthetase [Citreicella sp. SE45] gi|260422341|gb|EEX15592.1| alanyl-tRNA synthetase [Citreicella sp. SE45] Length = 906 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 426/895 (47%), Positives = 561/895 (62%), Gaps = 43/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F+K GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 18 MQSLNDIRSTFLGYFEKQGHEVVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 77 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI AW+L+T+E D+ Sbjct: 78 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKSEAIPFAWELVTRELDI 137 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EA ++WKK +G+ D+IIRI T+DNFW M TGPCGPC+EIFFD G Sbjct: 138 DPKRLLVTVYHTDDEAAEIWKK-TGVPEDRIIRIATSDNFWMMGPTGPCGPCTEIFFDHG 196 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++EIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 197 DKYWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRRELAAQSIDTGMGIERVAALLQG 256 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS VT +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 257 TNDNYSTDLIRSLIEASADVTSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 316 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG+AYPEL++A+ LIEETL+ E+ RF Sbjct: 317 VLRRIMRRAMRHAHMLGSKDPVMYRLVPALVRQMGAAYPELVRAQPLIEETLKLEETRFK 376 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L L G AFKLYDT+G PLD+ QD L R +D F+ Sbjct: 377 QTLDRGLKLLDEELVSLPAGASLPGATAFKLYDTYGFPLDLTQDALRERERT-VDTDGFD 435 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + +++GAT F+GYD Sbjct: 436 AAMSEQKAKARAAWSGTGEAADLAIWFEIADQHGATDFLGYD------------------ 477 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + +V+ G VE +G+ VV +QTPFY E+GGQ+GDTG Sbjct: 478 -----TETAEGQMLTLVRDGVEVEALEAGETGWVVLNQTPFYGESGGQVGDTGFLRRLED 532 Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +V + I H V +G ++ L +D++ R + NHSATHLLH Sbjct: 533 EHDMAEVTDTQKMGGGKITAHQVTVRQGRFVKGDAVALEVDHKRRGMIRANHSATHLLHE 592 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS PD LRFD +H+K +T+ E+ +E VN I QN PV TRIM Sbjct: 593 ALRRALGPHVAQRGSLNAPDRLRFDFSHAKALTAEEIAQVETEVNAFIRQNAPVTTRIMT 652 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLL 708 +DA A GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I Sbjct: 653 PDDARAIGAQALFGEKYGDEVRVVSMGELAGSGKGGDGKTYSLELCGGTHVRQTGDIGTF 712 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + SES+ AG+RRIEA+TG+ A + L G+D L + LK + V RV + +E R Sbjct: 713 ALTSESASAAGVRRIEALTGEAAMAELRGRDHALSRIEGLLKAHGPDAVARVAALLDERR 772 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L A+ + L + + V F++ ++S V K+L ++D + ++ SG Sbjct: 773 RLDNEVAQLRRDLAMAGGPGEGPELRDVGGVPFVAQVLSGVQGKDLPPLIDEHKARLGSG 832 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++L+ K +V VTEDL +AVDL + + + LGG GGGGRP +AQ G Sbjct: 833 AVLLIA-DTGGKVAVAAGVTEDLTGNVSAVDLVKAAVEALGGKGGGGRPDLAQGG 886 >gi|301064400|ref|ZP_07204825.1| alanine--tRNA ligase [delta proteobacterium NaphS2] gi|300441482|gb|EFK05822.1| alanine--tRNA ligase [delta proteobacterium NaphS2] Length = 880 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 365/906 (40%), Positives = 530/906 (58%), Gaps = 42/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR FL++F K+ H ++ SSSLIP +DPTL+FTN+GMV FKN F G+ Y Sbjct: 1 MNFREIRQQFLDYFSKHDHRIVESSSLIPRDDPTLLFTNAGMVQFKNAFLGENV-GYTRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W+LLT+ + L Sbjct: 60 ATAQKCVRAGGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKEEAIRWGWELLTEGYGLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+++VY +D+EA+ +W+K GL AD+I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 120 AEKLHVSVYKDDDEAYDIWQKEIGLPADRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGP 179 Query: 182 CIPGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + +RY+EIWNLVF QF++ + LPK +IDTGMGLER+A V+Q Sbjct: 180 SVGCGRPECACGCDCDRYLEIWNLVFTQFDRSPDGKLTPLPKPNIDTGMGLERLAAVIQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD DLF+ +I E ++ KY V RVI DH R+ SFLI DGI+P+NEGR Sbjct: 240 VKSNYDTDLFRDIITRIESLSQKKYGSNERMDVAFRVISDHARAVSFLIGDGIMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA + + LG + + + + MG Y EL++A+ I + +E+ R Sbjct: 300 GYVLRRIIRRASRFGQALGLEDIFLRSICDHVIELMGRDYGELVRARSFILGVVENEERR 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL + +L + L + E + G+V FKLYDT+GL +D+++D+ L G+D+ Sbjct: 360 FADTLRYSMKVLREEIEQLREKEKAAIPGEVVFKLYDTYGLAVDLVEDVARDENL-GVDL 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + A+ QRS ++ G G K + L + ++F GYD L Sbjct: 419 EGYKDAMNRQRSLSQESWKGSGEAAVPKTFRDLLNRNLTSRFTGYDTLE----------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + ++V V G K +++ DQT FYAE+GGQ+GDTG + Sbjct: 468 ------------AESRILSLVLGDLEVNTIYKGDKAQMILDQTAFYAESGGQVGDTGLIM 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ + K + + VH +E G L S+ ++D +R ++ +HSATHLLH Sbjct: 516 NGIAHFRVENTFKYGQDLIVHEGFLEEGELSVGDSVQASVDTAHRMAVAASHSATHLLHA 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG HV Q GS + P LRFD +H +++ L +E VND I +NLP+ TRIM+ Sbjct: 576 ALREILGDHVKQAGSRVAPGRLRFDFSHFTQVSTENLIEVERWVNDRIRENLPLDTRIMD 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +E A+ +GA A+ KY D+VR+V + S LCGGTH TG+I + I+SE + Sbjct: 636 KEAAMKTGAMAIFEEKYGDKVRIVDIGE----GVSRELCGGTHTRRTGDIGVFRILSEGA 691 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + A +RRIEA+TG A + +DE+LK+ A LKV+ ++ +++ + EE R+ + Sbjct: 692 VAANVRRIEALTGASALLYDQERDERLKNAAGLLKVAPDQLIEKLKRLLEEAREKEREIE 751 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L E + +I ++ ++ + KEL+ D ++ ++ SGI++L G Sbjct: 752 SLKGRLFTEKSADLMQDVREITGISVVAKELEAETPKELREAADRIKDRLGSGIVLL-GA 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K ++ VT+DL +RFNA + R + ++GG G GGRP MAQ GG K +A Sbjct: 811 KNGGKVMLICAVTKDLTNRFNAGQIIRELSGIVGGKG-GGRPDMAQGGGDRPEKLTEAFN 869 Query: 891 GVASFL 896 + + + Sbjct: 870 SLETLI 875 >gi|70731848|ref|YP_261590.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] gi|83305855|sp|Q4K843|SYA_PSEF5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68346147|gb|AAY93753.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] Length = 874 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 382/893 (42%), Positives = 527/893 (59%), Gaps = 55/893 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF+ L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RISAVLQHVHSNYEIDLFQSLLDAAAKAIGCT--NDAQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L ++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLKILEQDLAELK-GSVVPGDVVFKLYDTYGFPMDLTGDIARERNLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR RAR+ S + SL + AT+F GY G Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATEFTGYHATSG------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ V A+ ++G+ V+ G++ VV DQTPFYAE+GGQ+GD Sbjct: 465 -----------------SAKVVALYKEGQSVDMLSEGEEGVVVLDQTPFYAESGGQIGDC 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH ++ +G L + +D Q R S+NHSATH Sbjct: 508 GYLQAGNARFDVRDTTKTGG-AFLHHGVLAKGSLTVGAPVETQVDAQVRHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + I ++K++ED VN I +N PV T Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNTPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIGLLKIT 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E+LK A+ +K S+ N++ ++ + E R L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLVKGSRDNLIDKLSAVLERNRLLE 742 Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + V ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSAQAADVKGVKVLAARLDGQDGKALLALVDQLKNKLGRAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 L + +E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG Sbjct: 803 LGSVHEE-KVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 853 >gi|268595847|ref|ZP_06130014.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19] gi|268549635|gb|EEZ44654.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19] Length = 881 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 8 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 68 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+L Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L T+F GY Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ + G V E G VV D TPFYAE+GGQ+GD Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA + A L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ + L K + +I Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865 Query: 886 DQAIAGVASFL 896 + +A +L Sbjct: 866 PEMLASAEGWL 876 >gi|242280583|ref|YP_002992712.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] gi|242123477|gb|ACS81173.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] Length = 880 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 370/906 (40%), Positives = 523/906 (57%), Gaps = 40/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL++F+KNGH ++ SSSL+P +DPTL+FTN+GMV FKN F GQEK Y Sbjct: 1 MKASEIREKFLKYFEKNGHTIVDSSSLVPKDDPTLLFTNAGMVQFKNTFLGQEKRDYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT+E L Sbjct: 61 TTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFCWGFLTEELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y +D+EA +LW+K+ A++I R+ DNFWSM +TGPCGPCSE+ DQGE Sbjct: 121 KDKLYVTIYTDDDEADELWQKVVNFPAERIYRLGEKDNFWSMGDTGPCGPCSEVHIDQGE 180 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + +RY+EIWNLVFMQ++Q + R LP+ SIDTGMGLER+ V Q Sbjct: 181 DMSCGPNCGIGKCDCDRYLEIWNLVFMQYDQDEEGNRVPLPRPSIDTGMGLERITAVCQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 +N++ D+F+ +IQA + G+KY+ ++ +VI DH RS +FLI D ILP+NEGR Sbjct: 241 VQSNFETDIFQPMIQAVAKKAGVKYKEDSEIDTALQVIADHSRSIAFLITDQILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG T+P + + +M +PEL+ K + ++ E+ER Sbjct: 301 GYVLRRLIRRAFRFGRLLGLTDPFLHETTAMVVEQMSGQFPELLDNKDFMARMVKEEEER 360 Query: 358 FGKTLDRG--LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD+G ++ + +++G+ AFKLYDT+G PLDI+ + + + +D Sbjct: 361 FSQTLDKGLIILEEEMEELKKAGKNLISGETAFKLYDTYGFPLDII-NDVAEKQEFEVDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN A++EQ+ RA+A G G + I+ + E F GY L + Sbjct: 420 DGFNAAMKEQKDRAKAAWKGSGEKNSGAIFRQVLEAGLKNSFTGYSELTTESRI------ 473 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V + ++GE +E G ++ TPFY E+GGQ+GDTG Sbjct: 474 ----------------VNLLSEEGEHLERITQGNGGWIITAATPFYGESGGQMGDTGAVG 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ + K + + V G L E L + + R NH+ THLLH Sbjct: 518 TLTGNAEVLETVKASADLTASKVFVSEGELLLEQEAKLEVSPETRVATERNHTVTHLLHA 577 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q+GS + PD LRFD TH +T E+ +E+ VN I + PVV + M+ Sbjct: 578 ALKKVLGDHVKQSGSLVGPDRLRFDFTHIAAMTPEEIGEVENEVNRAILGDTPVVVQEMS 637 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV + S LCGGTH+ +TGE I SES Sbjct: 638 NDEAAAKGATALFGEKYGDVVRVVEIPG-----ESMELCGGTHLKATGEAGTFVIQSESG 692 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA TG + L Q ++ + ++ LK + G + R+ + + ++L + Sbjct: 693 VAAGIRRIEAATGWNSLKFLQEQRAEVVTSSAMLKAAPGQLADRIAALQSQVKELTKAND 752 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K + +L S +I V ++ + + K L+ DAL+ K+ SGI LV Sbjct: 753 KLQSKLASGAGADLMSSIEEIGGVKVLAAKLEVTNVKALRDQADALRSKMDSGIFCLVAQ 812 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++I VT+DL DRF A L + A +GGGG GGRP MAQ+GG N ++A A Sbjct: 813 VDDNKVSLIIAVTKDLHDRFQAGALIKPVAAEVGGGG-GGRPDMAQAGGTNPAGIEKAFA 871 Query: 891 GVASFL 896 + + Sbjct: 872 TLKKLV 877 >gi|309378363|emb|CBX23009.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 874 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 368/911 (40%), Positives = 516/911 (56%), Gaps = 58/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI LAW+ LT + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHLAWEFLTSPKCLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+E + +W G+ +++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKDKLLPTVYAEDDEPYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+L Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVIADHIRSCSFLIADGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 PANEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L Sbjct: 300 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ + L G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + + A + + K L + T+F GY Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE--------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V E G VV D TPFYAE+GGQ+GD Sbjct: 461 --------------RQTEAKVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK +F + G L+ S+ +D + R NHSATH Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVSVNA 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+ Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A+ K +L V + ++ I + L+ ++ L K + I+ Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIV 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEKL 858 Query: 886 DQAIAGVASFL 896 I V ++ Sbjct: 859 PAMIDSVKDWV 869 >gi|119505423|ref|ZP_01627496.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma proteobacterium HTCC2080] gi|119458701|gb|EAW39803.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma proteobacterium HTCC2080] Length = 866 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 373/901 (41%), Positives = 532/901 (59%), Gaps = 46/901 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F++ GH + SSSL+P +DPTL+FTN+GM FK F G E YQ Sbjct: 1 MKTAEIREAFLSYFEEQGHTRVESSSLVPHDDPTLLFTNAGMNQFKETFLGLETRAYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT+ +L Sbjct: 61 CTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTEVLELP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++TV+ D+EA +W G+ + R+ DNFW M +TGPCGP SEIF+D G Sbjct: 121 KERLWVTVHISDDEAAAIWIDEIGIDPSCLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS+++ +RYIEIWNLVFMQF + E LP S+DTGMGLER+A VLQ Sbjct: 180 HVPGGPPGSADDDLDRYIEIWNLVFMQFNRDGAGELHPLPAPSVDTGMGLERIAAVLQHV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+A+ + + RVI DHLRS +FLI DG++P+NEGRGYV Sbjct: 240 HSNYEIDLFQTLIKATASALAVAD--LEEKSLRVISDHLRSCAFLITDGVVPSNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG T+P L+P L EMG+AYP+L ++ I + LR+E+++F + Sbjct: 298 LRRIIRRAVRHGNKLGATKPFFAALVPVLVAEMGAAYPDLQASESAIVKALRAEEDQFAR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD G+ +L+ LS L +L G++ F+LYDT+G P+D+ DI R L +D+ +++ Sbjct: 358 TLDNGMAILEEALSGLQ-GAVLPGELVFRLYDTYGFPVDLTNDIARERNLT-LDVEGYDE 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ +QR R++ SG+ + + G TQF GYD G Sbjct: 416 AMAQQRKRSQE------SGSFKVDYNESVTIPGETQFTGYDSTEG--------------- 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S + A++ +GE+ + +G++ VV + TPFY E+GGQ+GD G G+ R Sbjct: 455 --------SGTILALLAEGEMAQSLAAGERGVVVLNSTPFYGESGGQVGDCGLLQGESSR 506 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +TD K F H V G L L T+D + R+++ +NHSATHLLH AL + Sbjct: 507 ADVTDTTKAQGHHFH-HVHVTSGSLNVGDVLAATVDNELRQRIRLNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + + LRFD +H + +++A++ + VN+ I N T++M+ + A+ Sbjct: 566 LGDHVVQKGSLVDSERLRFDFSHGEAVSAAQIDELTQIVNEQIRGNSATTTQLMDMDSAV 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA AL G KY D VRV+S+ S LCGGTHV TG+I LL + ES + AG+ Sbjct: 626 AAGATALFGEKYGDEVRVLSMGS---EGFSVELCGGTHVDRTGDIGLLLVTGESGVAAGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEAITGQ A + +++ +A LK + VV + + E R+L+ A+ K + Sbjct: 683 RRIEAITGQAALVQSLASSQRVVDVAEVLKATPAAVVEKAGVLRSEVRELEKEVARLKQK 742 Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L S ++ + ++ I D L+ +D + K+ + +++L + + K Sbjct: 743 LATSSGGDLTQSAVEVGGIKVLATQIEGADVATLRDTLDQCKNKLGTAVVLLAAVEGD-K 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ VT+D+ DR A D + A LGG G GGRP MAQ GG + A+A V + Sbjct: 802 ISLVAGVTKDVTDRVRAGDAIKEFAGRLGGKG-GGRPDMAQGGGTDVAGLPAALAAVPDW 860 Query: 896 L 896 + Sbjct: 861 V 861 >gi|325267938|ref|ZP_08134587.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394] gi|324980624|gb|EGC16287.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394] Length = 873 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 363/913 (39%), Positives = 528/913 (57%), Gaps = 58/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y+ Sbjct: 1 MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +V+ DH+RS SFLIADG++ Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D FN+ + A + K L T+F GY+ Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + E V+E +G+ VV +QTPFYAE+GGQ+GD Sbjct: 460 -------------KRSQETKIIALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++ D QK + V G L+ ++ ID R + NHS TH Sbjct: 507 GFIVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + RFD++H + I++ E+ +E VN I N+PV Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ EDA SGA L G KY D VRV+++ G +S+ LCGGTHV+ TG+I I+ Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AGIRR+EAITGQ A + Q+ +K++ + +K +V+ +++ + L Sbjct: 682 SEGGIAAGIRRVEAITGQAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + + ++ I + L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIDAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + ++ Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTNKVKAGDLIKFAAEQI-GGKGGGRPDLAQAGGTDASQV 858 Query: 886 DQAIAGVASFLKK 898 + S++++ Sbjct: 859 GAMLDSAESWVRE 871 >gi|238897262|ref|YP_002922939.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465017|gb|ACQ66791.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 875 Score = 864 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 393/909 (43%), Positives = 543/909 (59%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF+ GH+++ SSSLIP +DPTL+FTN+GM PFKNIF G + P + T Sbjct: 4 STADIRQKFLDFFKSKGHQVVSSSSLIPHHDPTLLFTNAGMNPFKNIFLGIQDPDFSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI AW+LLT + F L Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIYFAWELLTGSEWFHL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RLY+TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPCS Sbjct: 124 PKDRLYVTVYSTDDEAYNIWADEIGIPRERIIRIGDNKGAAFCSDNFWQMGETGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ + GGLPGS EEG+RYIEIWN+VFMQF + LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHLWGGLPGSPEEEGDRYIEIWNIVFMQFNRLADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 MA VLQ ++NY+IDLF+ LI ++VTG ++ + RVI DH+R+ +FLI DG+ P Sbjct: 244 MAAVLQNVSSNYEIDLFRDLISGVKKVTGATD--DSNPSLRVIADHIRACAFLIFDGVRP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG +P LL +L M +L +++IE+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAIRHGNKLGVKKPFFYQLLTSLIGVMKPITDQLKHHQVMIEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E F TL+RGL LLD L HL + L G+ AF LYDT+G PLD+ D+ R L Sbjct: 362 TEEELFSHTLERGLSLLDKKLDHLK-GDTLEGETAFLLYDTYGFPLDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID ++F+Q + EQR+RAR + T+F GY+ L+ Sbjct: 420 IDEVTFHQKMSEQRARARQA------SAFSTDYNKFIRVAHHTEFCGYEQLQQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++++KA+ +GE + E +GQ+ V+ D+TPFYAE+GGQ+GD G Sbjct: 467 ----------------TTVIKALFFRGEEINEIHAGQEALVILDKTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++D QK VH +G LR + ++ + R + NHSATHL Sbjct: 511 YLKSTTAHFMVSDTQKYG-QAIVHLGQPSKGSLRISDHIQACVNNKVRDHIRSNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + RFD +H K +T E++++E VN I QN + T+ Sbjct: 570 LHAALRQVLGKHVVQKGSLVNEKCCRFDFSHFKMMTPDEIENVESLVNQQIRQNHLIETQ 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ EDA GA AL G KY D+VRV+S+ G S LCGGTH TG+I L +I S Sbjct: 630 IMSLEDAKKKGATALFGEKYEDQVRVLSM-----GDFSIELCGGTHARRTGDIGLFHITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ESS AGIRRIEAITG+ A + L Q L+ LA LK + ++ R+ I + + L+ Sbjct: 685 ESSTAAGIRRIEAITGEEANALLCQQRNVLQDLARLLKSDEKGLIERIGIIIDRNKVLEK 744 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K Q ++ S +I ++ + + V+ L+ ++D L+ ++ S +I+L Sbjct: 745 KLQHFKDQEILQKTSLLLKNVKQIKEIKILIAQLDAVEPILLRRMIDDLKNQLGSAVILL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++K K S + VT++L + A DL A + GG GGGR MAQ+GG N N Sbjct: 805 ANVTKN-KISFIAGVTKNLTQQIKADDLIHYIAPKI-GGKGGGRADMAQAGGTNINSLAT 862 Query: 888 AIAGVASFL 896 +A ++ Sbjct: 863 VLAEAEKWI 871 >gi|332184146|gb|AEE26400.1| Alanyl-tRNA synthetase [Francisella cf. novicida 3523] Length = 865 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 379/900 (42%), Positives = 527/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKRDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI + DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSTDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QV + N + RVI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVINARDI--NSPSLRVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG + L+ L +MG AYP+LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAVRHGNKLGANQIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L + ++G+VAFKLYDT+G P D+ D+ +GL +D F Sbjct: 359 KTIENGIKIFDAEIENLK-GDTVSGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQVFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + +L ++F GY L Sbjct: 417 AQMQVQKQRSKEA------GKFNVDYNTLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I ++V+ VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYHDSQLVDSITEEASAVVVLDKTPFYAESGGQVGDKGVLEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFIVEDVQKSGE-AILHIGKLVKGRLNVNDELTAQVSDQPRLATAANHSATHLLHKALKV 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSH Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 ILGSHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVATIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SES I +G Sbjct: 627 KSLGAQALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISESGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + AK K Sbjct: 682 IRRIEAVTADKAIRHTFTNENKIVAIKDSLKANDANLIDKLKSMLEQIKNQDKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L+ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ + A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNAMTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|114800099|ref|YP_761420.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444] gi|123322977|sp|Q0BYM3|SYA_HYPNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114740273|gb|ABI78398.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444] Length = 881 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 449/906 (49%), Positives = 587/906 (64%), Gaps = 35/906 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR TFL FF+KNGH PS+ L+P NDPTL+F N+GMVPFKNIFTG EKP Sbjct: 1 MNGVNDIRETFLGFFEKNGHARRPSAPLVPQNDPTLLFVNAGMVPFKNIFTGAEKPFAPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A+ LAW+L+TKE+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAVALAWELVTKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY EDEEA +WKK++GL +IIRI T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 DAKRLLVTVYAEDEEAPAIWKKVAGLDDSRIIRIATSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG P E+G+R+IEIWNLVFMQFEQ +R LPK SIDTGMGLER+A VLQ Sbjct: 181 DKVAGGPPGSPDEDGDRFIEIWNLVFMQFEQHEGGKRTNLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLF+ LI A E+V G K G+ + RVI DHLR+S+FL+ADGILP+NEGRGY Sbjct: 241 VHNNYDIDLFRALIAAEEEVYGQKASGDKTASFRVIADHLRTSAFLVADGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LG EP M L+PAL EMG AYPEL +A++ IE + E+ RF Sbjct: 301 VLRRIMRRAMRHGHMLGAREPQMHRLVPALVAEMGKAYPELGRAQVAIEAAIEQEEARFQ 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL LLD S L E L GDVAF+L DT G PLD+ QDIL RG +D+ F Sbjct: 361 RTLGNGLSLLDKAASELSPGEALPGDVAFRLSDTFGFPLDLTQDILRGRG-IEVDVDGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 AL+ QR +RA G TE+IWFS++++ G T+F GY G Sbjct: 420 TALDAQRETSRAGGFSSGDQATEEIWFSVRDEKGPTKFTGYSSTAG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + AI G ++E +G E+VFD TPFYAE+GGQ GD G + + Sbjct: 466 ---------EGRLIAIAAGGALIETVTAG-PAELVFDATPFYAESGGQAGDHGEIVFEDG 515 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R + DVQK+A + VH + G ++T M ++++ R+ + NHSATHL+H AL Sbjct: 516 ARFVVRDVQKRAGDLHVHIGELVSGSVKTGMKAQMSVNAARRKAVMANHSATHLMHAALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + D RFD +H P+T+A+L++IED VN I N+ ++ + Sbjct: 576 KVLGPHVTQKGSLVEADRFRFDFSHGAPVTAAQLEAIEDEVNAQIRANIETGIKVTTPDK 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI +GA AL G KY D VRV+S+ E G +S LCGG HVS +G+I + I+SE + Sbjct: 636 AIEAGALALFGEKYGDEVRVLSMGDAGEGGRPYSVELCGGIHVSRSGDIAVFTILSEGGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIE TG A ++L G+ + +A LKV ++ RV + EE R L+ ++ Sbjct: 696 SAGIRRIEGATGAEALAYLKGRAQIAADVAESLKVPLKDLPRRVASLTEERRTLERELSE 755 Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + I VN ++ + V KEL++++D + KI SG+++ Sbjct: 756 AKRKLAMGGGGGAPAGPEVINGVNLIARVAEGVGGKELRALVDEAKSKIGSGVVV-FVGV 814 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 KA V I VT+DL ++F+AV+L + +A +GG GGGGRP MAQ+GGP+G+KA++A+ Sbjct: 815 DGGKAGVAIGVTKDLTEKFSAVELVKAAAAAIGGQGGGGRPDMAQAGGPDGDKANEALEA 874 Query: 892 VASFLK 897 V + LK Sbjct: 875 VRAALK 880 >gi|205830253|sp|B0KR43|SYA_PSEPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 373/896 (41%), Positives = 526/896 (58%), Gaps = 55/896 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + + Sbjct: 61 VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLE Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++L+ A+ + G + + +V+ DH+RS FLIADG+L Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P+D+ DI R L Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + ++ QR RAR+ S + SL + AT+F+GYD Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATE------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDT Sbjct: 464 ----------------AQGKIIALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K F+HH +V G L + +D + S+NHSATH Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + LRFD +H + + ++K +ED VN + +N V T Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+ Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L+ Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ ++ + D K L +++D L+ K+ +I+ Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L G E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG + Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856 >gi|251798323|ref|YP_003013054.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2] gi|247545949|gb|ACT02968.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2] Length = 877 Score = 863 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 353/910 (38%), Positives = 524/910 (57%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L FF+ H + PS+SL+P NDP+L++ N+GM P K F G+ P + Sbjct: 1 MKASEIRSKWLSFFESKRHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT + Sbjct: 61 TNSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTSKEWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RL +TVY EDEEA+K W + GL A++I ++ +NFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPDRLSVTVYPEDEEAYKYWNEKIGLPAERIYKLD--ENFWDIGE-GPCGPCTEIFYDR 173 Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 GE E ER++E+WNLVF QF LP +IDTG GLER A++ Sbjct: 174 GEKYGDLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPAN 294 LQ+ +N+D DLF +I+ + ++ +KY N+ +VI DH+R+ +F + DG++P+N Sbjct: 234 LQDVDSNFDTDLFIPIIERTCEIASVKYHVNDEHDVALKVIADHIRTVAFAVGDGVMPSN 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGY++RR++RRA+ Y + +G P + L + MG YPE++ + IE +R+E Sbjct: 294 EGRGYIIRRLLRRAVRYGKTIGIDRPFLYELTSVVGEVMGVYYPEVVDKREFIERVIRTE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL GLV+L +++ K + G+ AF+LYDT+G P D+ +D G+ Sbjct: 354 EERFHETLSDGLVMLSDLVATARKAGTTEIGGEDAFRLYDTYGFPFDLTEDFASENGMT- 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F+ A+E QR RARA G + L + ++F+GY+ L Sbjct: 413 VDREGFDAAMEAQRERARAARQDTGGMNVQG--GPLADFTVKSEFVGYNEL--------- 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + AIV + +V+ G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 462 --------------VTEAQITAIVHEDSLVDLVGEGSRVLVLLDRTPFYAESGGQIGDKG 507 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+G LQ+ DV K G VHHA+V G +RT ++ + R + NH+ATHL Sbjct: 508 TIVGNGFTLQVEDVTKAPHGQSVHHAVVASGTVRTGETVEAVVIRSVREDVIKNHTATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + D LRFD +H IT EL IE VN+ I PVV Sbjct: 568 LHKALKEVLGDHVNQAGSLVQADRLRFDFSHFGSITPEELTEIERKVNEQIWIGTPVVIE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +A A GA AL G KY D VRVV V G +S LCGG HV++T +I + +VS Sbjct: 628 SKQIAEAKAMGAMALFGEKYGDIVRVVQV-----GNYSIELCGGCHVANTSQIGMFKLVS 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +G+RRIEA+TG+ A S++ GQ + LK ++ LK + +V R+E ++ + ++L Sbjct: 683 ESGIGSGVRRIEAVTGRHAYSYMEGQLDLLKQASALLKANNNDVPKRIEALFAQVKELGR 742 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L+ + + + DV +S +S L+ + D L+ K+ S +I+L Sbjct: 743 ENESLQAKLSRIEAGSLEQNAKTVGDVTVLSAKVSAPTMDALRGIADELKAKLPSAVIIL 802 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + +E K S++ V+ DL+ + F+A + + +A GG GGGRP MAQ+GG + +K D Sbjct: 803 GAV-QEDKVSLVAAVSADLVKKGFHAGKIVKEAAAHC-GGSGGGRPDMAQAGGKDASKLD 860 Query: 887 QAIAGVASFL 896 +A+ + Sbjct: 861 EALKLAEELV 870 >gi|319941405|ref|ZP_08015733.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] gi|319805025|gb|EFW01855.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] Length = 875 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 362/912 (39%), Positives = 521/912 (57%), Gaps = 56/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 V+ IR TFL+F++ GH ++ SS ++P NDPTL+FTN+GM FK+++ G + Y+ Sbjct: 1 MKVADIRRTFLKFYESKGHTIVASSPVVPGNDPTLLFTNAGMNQFKDVYLGFDHRPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L Sbjct: 61 TTSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIHFAWELLTEHFHLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW M +TGPCGPCSE Sbjct: 121 PEKLWVTVYAEDQEAYDIWHKEVGIPADRIVRIGDNKGARYMSDNFWMMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RY+EIWNLVFMQF + K E LP+ SIDTGMGLER+ Sbjct: 181 IFYDHGPSVQGGPPGSPEEDGDRYMEIWNLVFMQFYRDEKGEMHKLPRPSIDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ATVLQ +NYDIDLFK+L+ A++ + N + +VI DH+R+ +F +ADG+ Sbjct: 241 ATVLQGVHSNYDIDLFKNLLAAAKAAVESVSTVPADINSPSLKVIADHIRACAFCVADGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGR YVLRRI RRA+ + LG P L+ A+ EMG AYPEL+ + IE+ Sbjct: 301 VPGNEGRAYVLRRICRRALRHGYKLGARGPFFYKLVDAVRKEMGEAYPELMNHE--IEKV 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + +E+ RF +TL +G+ +LD ++ K +L GDV FKL+DT+G P D+ D+ RG+ Sbjct: 359 IEAEERRFLQTLSKGMDILDAAIAE-NKTGVLPGDVVFKLHDTYGFPADLTADVCRERGI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + ++ + + + G L T F GY+ L Sbjct: 418 SVNTAEFDAAMERQRAAARASAKFKMAQG--------LDYTGADTVFTGYETLTEKD--- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ GE V+ +G + VVF++TPFYAE+GGQ+GD Sbjct: 467 -------------------AEVVALYANGEPVDRVEAGSECVVVFNRTPFYAESGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G A L++ D + + V G + L +D R + NHS T Sbjct: 508 QGEAKNATAILKVLDTFRVKAAVTGLQCHVAEGHVAVGDKFDLAVDEARREATARNHSVT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL T+LG V+Q GS +TP+ RFD ++ KP+T+ ++ +E VN I +N PV Sbjct: 568 HLMHFALRTVLGDKVAQKGSLVTPESTRFDFSYGKPVTAEQIAEVERIVNAQILKNTPVQ 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 TR++ E+A +GA L G +Y + VRV+ + S+ CGGTHV +TG+I + Sbjct: 628 TRVLPIEEAKKTGAVMLFGERYGEVVRVLDIG------KSTEFCGGTHVKATGDIGFFKV 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSES I AG+RRIEA+TG A S + + L + A K V + + R L Sbjct: 682 VSESGIAAGVRRIEAVTGMNALSWVQNTESLLAATAREFKAPVSEVPVKAADAIATIRTL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + K Q+ + + V + + D+K L+ MD ++ K+ S + Sbjct: 742 EKGIDQLKSQMAAKAGDALIAEACDVKGVKVLLARLDGADAKALRETMDKVKDKLGSAVA 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L ++ E + + VT+DL R A +LA A +LGG G GG+P +A +GG + K Sbjct: 802 VLASVTGEDRVQLAAGVTKDLTGRVKAGELAGFVAGLLGGKG-GGKPDLAMAGGSDVKKL 860 Query: 886 DQAIAGVASFLK 897 +A+ ++++ Sbjct: 861 PEALEAARAWIE 872 >gi|238753177|ref|ZP_04614619.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380] gi|238708604|gb|EEQ00880.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380] Length = 846 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 377/884 (42%), Positives = 533/884 (60%), Gaps = 55/884 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT + F+L + +L++TVY+ D+EA+++W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAISFAWELLTSGQWFNLPKEKLWVTVYETDDEAYEIWANEIG 120 Query: 146 LSADKIIRITTN------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYI 198 + ++IIRI DNFW M +TGPCGPCSEIF+D G+ I GG PGS E+G+RYI Sbjct: 121 IPHERIIRIGDKGAPFASDNFWQMGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRYI 180 Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258 EIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ NY+IDLF+ LI A + Sbjct: 181 EIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNTNYEIDLFRDLIAAVAE 240 Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318 VTG N + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 VTGATD--LNSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNILGAK 298 Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378 E L+ L MGSA EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 ETFFYKLVGPLIAVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT- 357 Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438 + L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR S Sbjct: 358 GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------S 410 Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 + SL A+QF GYD + + V A+ + Sbjct: 411 SGFGADYNSLIRVDSASQFSGYDHV-----------------------HQQATVTALFRN 447 Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558 GE V+E G++ VV +QTPFY E+GGQ+GD G ++D QK H Sbjct: 448 GEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVSDTQKYG-QAIGHLG 506 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 + G LR S+ +D R ++ +NHSATHLLH AL LG HV+Q GS + LR Sbjct: 507 QLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYLR 566 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678 FD +H + + +++ +ED VN+ I +N+PV T +M E A GA AL G KY+D+VRV Sbjct: 567 FDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELEAAKEKGAMALFGEKYDDQVRV 626 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 +++ G S+ LCGG H S TG+I L I+SES AGIRRIEA+TG+ A + L Q Sbjct: 627 LTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQ 681 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIAD 793 + L +A +K + +V + + + L+ + K Q ++ + + Sbjct: 682 SDLLADVAHLVKGDTHTLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKLVNG 741 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853 V + + V+ K L++++D L+ ++ S II+L + + K S+++ VT+DL + A Sbjct: 742 VKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTSKVKAG 800 Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +L A+ + GG GGGRP MAQ+GG + + A+A V ++++ Sbjct: 801 ELIADIAQQV-GGKGGGRPDMAQAGGTDVHALPSALASVEAWVE 843 >gi|114569559|ref|YP_756239.1| alanyl-tRNA synthetase [Maricaulis maris MCS10] gi|122316388|sp|Q0AQY6|SYA_MARMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114340021|gb|ABI65301.1| alanyl-tRNA synthetase [Maricaulis maris MCS10] Length = 884 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 439/907 (48%), Positives = 595/907 (65%), Gaps = 36/907 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++ IR TFL++F K+ HE++PS+ L+P +DPTL+F N+GMVPFKN FTGQEK Sbjct: 1 MASLRDIRATFLDYFAKHEHEVVPSAPLVPQDDPTLLFVNAGMVPFKNSFTGQEKRASLR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T EF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAISHAWNLVTGEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY EDE+A LW+KI+GL+ D+II I+T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PAEKLLVTVYAEDEQARALWRKIAGLTDDRIIGISTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG P E+G+R+IEIWNLVFMQ+EQ ER LPK SIDTGMGLER++ +LQ Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDERINLPKPSIDTGMGLERISAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K NNY+ DLF++LI A E V G+K EG+ + +HRVI DHLRS+ FL+ADG+ P+NEGRGY Sbjct: 241 KHNNYETDLFRNLIAAGESVLGVKAEGDALASHRVIADHLRSTCFLMADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EP+M L+ AL +EMG AYPEL +A+ L+EETL+ E+ERF Sbjct: 301 VLRRIMRRAMRHAHLLGAGEPVMWKLVDALKSEMGDAYPELERAQALLEETLQVEEERFQ 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LL+ + +G+ + L G AFKLYDT+G PLD+ QD L A+G+ +D FN Sbjct: 361 RTLGRGLSLLEEATADMGEGDALAGATAFKLYDTYGFPLDLTQDALRAKGMT-VDEAGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+++QR+ ARA G + +WF++++K GAT F GY Sbjct: 420 SAMDKQRADARASKFSSGDAAPDAVWFAVRDKVGATAFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 G + AIV G+ + SGQ+ E+VFD+TPFY E+GGQ GDTG Sbjct: 461 ----AGTGGKGRLTAIVSGGQEAKALGSGQRAELVFDETPFYGESGGQCGDTGEIRFVDG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D QK+ + H ++ +G + L D R + NHSATHL H AL Sbjct: 517 AVFTVEDTQKRGGDMHAHIGVLTKGEITLGDVAALDADAPRRAAIRANHSATHLAHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV+Q GS + PD LRFD +H+K +++ ++ +IE VN +I QN+PV TR M + Sbjct: 577 DVLGAHVTQKGSHVGPDRLRFDFSHNKSVSADQIAAIEAQVNAVIRQNVPVSTREMTPDA 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL G KY D VRV+++ + +S LCGGTHV TG+I L I++E++ Sbjct: 637 AIEAGALALFGEKYGDTVRVLAMGQGLADHATPYSVELCGGTHVERTGDIALFKIIAETA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +GIRRIEA+TG+ AR ++ Q ++ A LK ++ RV + +E RKL+ A Sbjct: 697 VSSGIRRIEAMTGEGARLYMDEQIGFGRAAADALKTPPSDLATRVAALVDERRKLERQLA 756 Query: 776 KRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K QL + I VNF+ ++ V K+L+ ++D + ++ SG+ +G Sbjct: 757 EAKKQLAMGGGASGAPAGPETINGVNFIGRVVEGVGGKDLRGLIDEAKAQMGSGVAAFIG 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + KA++ + VT+DL DRF AVDL + A +GG GGGGRP AQ+GGP+G KA+ + Sbjct: 817 V-NDGKAALAVGVTDDLKDRFVAVDLVKAGAAAVGGKGGGGRPDFAQAGGPDGAKANDGL 875 Query: 890 AGVASFL 896 A + + L Sbjct: 876 AAIRAAL 882 >gi|163794125|ref|ZP_02188098.1| Alanine--tRNA ligase [alpha proteobacterium BAL199] gi|159180739|gb|EDP65258.1| Alanine--tRNA ligase [alpha proteobacterium BAL199] Length = 889 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 433/904 (47%), Positives = 577/904 (63%), Gaps = 36/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR FL++F +GH + SS L+P NDPTLMFT +GMV FKN+FTG EK Y Sbjct: 1 MATTNDIRRVFLDYFAAHGHTAVESSPLVPRNDPTLMFTTAGMVQFKNVFTGAEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T++F L Sbjct: 61 AATAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIEYAWNLITRDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDE+A LW+KI+GL D+IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVYSEDEDAAALWRKIAGLPDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG P E+G+R++EIWNLVFMQFEQ K ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 PHIAGGPPGSPDEDGDRFMEIWNLVFMQFEQITKDERRSLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI+AS + + +G V+HRV+ DHLR+S+FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTMRALIEASAHASNTEPDGPFKVSHRVVADHLRASAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G TEPLM LLP L +MG AYPEL +A+ LI TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHIMGCTEPLMHRLLPTLVRDMGGAYPELGRAQALITGTLQLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL L+ LG + L G+VAFKLYDT+G PLD+ DIL +G +D F+ Sbjct: 361 DTLGRGLKHLEEATGKLGDSQALPGEVAFKLYDTYGFPLDLTADILRGQGRT-VDQAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ AR G G T+ +WF ++EK GAT+F+GYD Sbjct: 420 TAMDAQRAAARKAWTGSGEAATDAVWFEVREKTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A++ G+ V++A G +V VV +QTPFY E+GGQ+GDTG Sbjct: 462 -----TTAAEGQVTALLVDGKPVQKAELGVEVLVVVNQTPFYGESGGQVGDTGTIRAIDG 516 Query: 540 ---RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + D Q+K +FVH ++ G L ++ LT++ + R + NHSATHL+H A Sbjct: 517 GTAVVAVVDTQRKLGDVFVHRGMLSGGALSVGDAVQLTVETERRDRTRANHSATHLMHEA 576 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG HV+Q GS + P+ +RFD +H I +L +E VN + N V TR+M Sbjct: 577 LRQRLGEHVAQKGSMVAPERMRFDFSHPASIAREDLAWVEAEVNRRVRGNSEVTTRLMTP 636 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGG----VHSSALCGGTHVSSTGEIMLLYIVS 712 + AI GA AL G KY D VRVVS+ S LCGG HV TG+I L IV Sbjct: 637 QAAIDEGAMALFGEKYGDEVRVVSMGGSADKANRAAWSVELCGGIHVRRTGDIGLFKIVG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ AG+RRIEA+TG A + ++ L A+ LK + ++ RV + EE R+L+ Sbjct: 697 ESAVAAGVRRIEAVTGSGALDWIGAREAALGEAAAELKTTPEDLPARVHALVEERRRLER 756 Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + +L K+A + + + + V ++ELK + DAL+K+I SG++ +V Sbjct: 757 ELVETRKKLAAGGGAAGEVKKVAGLTYAARALEGVPARELKGLADALKKEIGSGVVAVVS 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E KAS+++ VT DL R +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ ++A A+ Sbjct: 817 GD-EGKASLVVGVTADLTGRISAVDLVRVGSEALGGKGGGGRPDMAQAGGPDASQAQAAL 875 Query: 890 AGVA 893 + Sbjct: 876 DAIE 879 >gi|126729804|ref|ZP_01745617.1| alanyl-tRNA synthetase [Sagittula stellata E-37] gi|126709923|gb|EBA08976.1| alanyl-tRNA synthetase [Sagittula stellata E-37] Length = 890 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 436/897 (48%), Positives = 572/897 (63%), Gaps = 44/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+K GH+++PSS L+P NDPTLMF NSGMV FKN FTG EK Y Sbjct: 1 MASLNDIRSTFLNYFEKQGHQIVPSSPLVPRNDPTLMFVNSGMVQFKNRFTGVEKGDYDR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI A++L+T+EF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAYELITREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ R+Y TVY D+EAF++WKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRIYTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 PEVWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS Q T + +G ++HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 KHDNYDTDLMRSLIEASAQATSVDPDGPGKMHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+AYPEL + + +IEETL SE+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPLMHRLVPALVRQMGTAYPELSRGQAMIEETLLSEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD LS LG D L G+ AFKLYDT G PLD+ QD L +G + +DI F+ Sbjct: 360 QTLDRGLKLLDEELSGLGDDAALPGETAFKLYDTFGFPLDLTQDALREKGRS-VDIEGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ++RARA G G +W+ + E +GAT F+GYD Sbjct: 419 AAMAEQKARARAAWSGSGDAADTAVWYDIAETHGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G +V G+K +V +QTPFY E+GGQ+GDTG Sbjct: 461 -----TEQAEGQVLALVKDGALVTSLAEGEKGWIVLNQTPFYGESGGQVGDTGWLRRLED 515 Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +I V+ + +F H V +G +L L +D+ R + NHSATHLLH Sbjct: 516 EHEIATVEDTQKMGGGKVFAHLVKVNKGTFAKGDALALEVDHGRRSSIRANHSATHLLHE 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS PD LRFD +H K ++++E+K++E +VN I QN PV TR+M Sbjct: 576 ALREALGDHVAQRGSLNAPDRLRFDFSHGKALSASEIKNVERDVNAYIRQNTPVSTRLMT 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLL 708 +DA A GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I Sbjct: 636 PDDARAIGAQALFGEKYGDEVRVVSMGAKPGSGKGADGATYSLELCGGTHVRQTGDIGAF 695 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + +S+ AG+RRIEA+TGQ A HL Q + L ++A+ +K V RV + EE R Sbjct: 696 VCLGDSASSAGVRRIEALTGQLALDHLAQQGQTLAAVAAEMKAPASEVPARVRTLLEERR 755 Query: 769 KLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 KL+ A + +L + +I V F++ +++ V K+L ++D + ++ S Sbjct: 756 KLESEVASLRRELAMSGGGQGAGPEAEEIGGVKFLAQVLTGVTGKDLPPLIDEHKSRLGS 815 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G ++L+ + K A VT+DL +AVDL + + LGG GGGGRP MAQ GG Sbjct: 816 GAVLLIADAGGKAAV-AAGVTDDLKGTLSAVDLVKAAVPELGGKGGGGRPDMAQGGG 871 >gi|312962605|ref|ZP_07777095.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6] gi|311283185|gb|EFQ61776.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6] Length = 872 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 383/891 (42%), Positives = 527/891 (59%), Gaps = 53/891 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVSSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT L Sbjct: 61 TSSQKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY D+EA+ +W + G+ +++IRI N DNFW+M +TGPCGPC+E Sbjct: 121 KEKLWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLER+ Sbjct: 181 IFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + V+Q +NY+IDLF +L+ AS G + + +V+ DH+RS FLIADG+LP+ Sbjct: 241 SAVMQHVHSNYEIDLFTNLLSASAAAIGCA--NESQSSLKVVSDHIRSCGFLIADGVLPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA + LG T ++ AL EMG A+PEL Q + IE L++ Sbjct: 299 NEGRGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGDAFPELKQQQGNIERVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTL+ GL +L+ L+ L ++ GDV FKLYDT+G P+D+ DI R L I Sbjct: 359 EEEQFSKTLEHGLKILEQDLAELK-GTVVPGDVVFKLYDTYGFPMDLTADIARERELT-I 416 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR RAR+ S + +L + AT+F GY G Sbjct: 417 DEAGFEREMEAQRVRARSASSFG------LDYNTLVKVDVATEFTGYKATVG-------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+ + A+ + G+ V+ G + VV +QTPFYAE+GGQ+GD G Sbjct: 463 ---------------SAKIVALYKDGKSVDVLNEGDEAVVVLNQTPFYAESGGQVGDCGF 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D K F+HH ++ G L + +D R ++NHSATHLL Sbjct: 508 LSSTSGRFEVRDTTKTGG-AFLHHGVLVLGNLTIGAPVDTQVDADVRHATALNHSATHLL 566 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I A++K++ED VN I +N V T Sbjct: 567 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIPPAQIKALEDIVNAEIRKNTAVQTEE 626 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I+SE Sbjct: 627 TDIETAKAKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + +G+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 683 SGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQ 742 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + + S + DV ++ + D K L +++D L+ K+ +I+L Sbjct: 743 LEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILLG 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG Sbjct: 803 SVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 851 >gi|145589899|ref|YP_001156496.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205830176|sp|A4SZL8|SYA_POLSQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145048305|gb|ABP34932.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 874 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 384/911 (42%), Positives = 535/911 (58%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 V+ IR +L+FF + GH+++PSS ++P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKVTQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F+L Sbjct: 61 TTAQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQVFELP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EA+ +WK G+ A++IIRI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLLVTVYAEDDEAYAIWKDQIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE IPGG P E+G+R+IEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 A VLQ +NY+IDLF +LI+A++ + + +VI DH+R+ SF++ DG+ Sbjct: 241 AAVLQHVHSNYEIDLFVNLIKAAKDTVDGAGGENCDAQSPSLKVIADHIRACSFIVVDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P N GRGYVLRRI RRA+ + LG +P L+PAL EMG AYPEL A+ + E Sbjct: 301 IPGNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMGDAYPELRAAQDKVSEV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L+ E+ERF +T+ G+ +LDG L+ G ++++G+ AF+L+DT G PLD+ D+ RG+ Sbjct: 361 LKQEEERFFQTIANGMEILDGALA--GGAKVVDGETAFRLHDTFGFPLDLTADVCRERGV 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F A+++QR +ARA K+ L K T+F GY+ L+ Sbjct: 419 T-VDSEGFEVAMQKQRDQARAAGKF-------KVAQGLDYKGVPTRFHGYETLKHEG--- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ G V +G VV D TPFYAE+GGQ+GD Sbjct: 468 -------------------AKITALYLDGSAVNSVKAGDAAVVVLDNTPFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + R + D K +F H V G L+ +L +D R NHSAT Sbjct: 509 KGELRNEAARFTVDDTFKIQADVFGHQGEVLEGELKVGDTLNALVDIALRNDTMRNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH AL +LG HV Q GS + RFD TH+ PIT+ +++ IED VN I N Sbjct: 569 HILHKALREVLGDHVQQKGSLVDASKTRFDFTHNAPITAEQIRRIEDIVNAEILDNSATS 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 ++M+ EDA +GA L G KY D VRV+ + S LCGGTHVS TG+I L I Sbjct: 629 GKVMSLEDAQKTGAMMLFGEKYGDEVRVLEIGS------SKELCGGTHVSRTGDIGSLKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE + AGIRR+EA+TGQ A L G ++K+ A+ LK G++V RV ++ E R Sbjct: 683 VSEGGVAAGIRRVEAVTGQNALHFLQGLEDKINEAATILKTHPGDLVNRVAQLQESLRLA 742 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K +L + + ++ + D+ L+ MDAL+ K+++ I Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGLKVLAARLDGADAGVLRETMDALKAKLKTAAI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S++ VT D + + A DL A+ +GG G GG+P MA +GG + +K Sbjct: 803 VLASVQGD-KVSLIAGVTADSIAKVKAGDLVNFVAQQVGGKG-GGKPEMAMAGGNDPSKL 860 Query: 886 DQAIAGVASFL 896 A+ GV ++ Sbjct: 861 GAALDGVKDWV 871 >gi|110679927|ref|YP_682934.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114] gi|123065511|sp|Q165U5|SYA_ROSDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|109456043|gb|ABG32248.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114] Length = 885 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 430/892 (48%), Positives = 564/892 (63%), Gaps = 41/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+T+E + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLVTRELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+T+Y DEEA +WKK G+ D+II I TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLYVTIYHTDEEAAAIWKK-VGVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLAAQSIDTGMGIERVAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS + +G +HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+AYPEL QA+ +I +TL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMIIQTLLQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD LS LG+ + L G AFKLYDT+G PLD+ QD L +G G+D F+ Sbjct: 360 QTLERGLKLLDDELSALGEGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+++ARA G G IWF + + G T F+GYD Sbjct: 419 AAMAAQKAKARAAWSGTGEAADAAIWFDVADAQGTTDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+VQ G + A +G+ V++ +QTPFYAE+GGQ+GDTG Sbjct: 461 -----TEVAEGQIVALVQGGTATQTAKAGETVQIALNQTPFYAESGGQVGDTGVIKTANG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +TD +K A+ +FVH A V G L + LT+D R + NHSATHLLH AL Sbjct: 516 VANVTDCRKTAD-VFVHMAKVTEGALSVGEAAQLTVDPARRTAIRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H++ ++ EL +E +VN I QN PV TRIM + A Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSHEELARVEADVNAYIRQNAPVETRIMTPDAA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ G +S LCGGTHV TG+I + Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSGKGLSGDTYSLELCGGTHVRQTGDIGAFVTLG 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG A HL QD++L ++A+ LK +V RV + EE R L Sbjct: 695 DSASSAGVRRIEALTGAAALQHLRAQDQRLAAVAADLKAQLADVPERVRSLLEERRALSN 754 Query: 773 IHAKRKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + +L +A FM+ ++S V K+L ++D +++++ SG+++ Sbjct: 755 EVAQLRRELAMSGGGGSAAPDVKDVAGTPFMAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 L+ + KA+V VT+DL + +AVD+ + S LGG GGGGRP MAQ G Sbjct: 815 LIA-DADGKAAVAAGVTKDLTAKLSAVDIVKASVAALGGKGGGGRPDMAQGG 865 >gi|220919010|ref|YP_002494314.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956864|gb|ACL67248.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 905 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 370/935 (39%), Positives = 538/935 (57%), Gaps = 76/935 (8%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR F +F+++GH + S+SL+P NDPTL+FTN+GMV FK++FTG+E+ Y Sbjct: 1 MKTLTAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+L+T Sbjct: 61 SRATTAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPA 120 Query: 117 EFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RL TV+ DEEAF+LWK G+ ++I ++ DNFW+M +TGPCG Sbjct: 121 WLGIAKDRLAATVFAGEGTLPWDEEAFELWKAQ-GVPVERIHKLGAKDNFWAMGDTGPCG 179 Query: 171 PCSEIFFDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 PCSE+ + QG IP G + + +R++EIWNLVFMQFE+ LPK S Sbjct: 180 PCSELHYFQGNDIPCAEELAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPS 239 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRS 281 IDTG GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+ + + RVI DH R+ Sbjct: 240 IDTGAGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARA 299 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 ++FL+ DG+LP+NEGRGYVLRRIMRRA+ + + LG +P + + A+ EMG AYPE Sbjct: 300 TTFLVGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLEKPFLAAVCGAVIDEMGGAYPETR 359 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------DEILNGD 385 + + IE+ + E+E F +TLD+GL +L+G + L I++G Sbjct: 360 ENRAFIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGK 419 Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445 VAF+LYDT G PLD+ + I RG +D F++ + EQR+R+ G G + + Sbjct: 420 VAFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQRARS--EWKGSGEQGVDDLH 476 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 + + G +F+GY+ + VKAI+ G V A Sbjct: 477 KQIARELGEVKFLGYEQP-----------------------AARAQVKAILANGARVARA 513 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 G KVE+V D TPFY E+GGQ+GD G G G+ +++ D Q+ G+ H V RG + Sbjct: 514 GKGDKVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEV 573 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 ++ L +D + R + NHSATHLL AL +LG HV Q GS + PD LRFD +H + Sbjct: 574 AVGDAVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQ 633 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 P+T EL ++E VND++ +N T ++ E+A +GA + G KY D VRVV + Sbjct: 634 PVTEEELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP-- 691 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S LCGGTHV +G+I I SE SI +G+RR+ A TG RA + E+L+ Sbjct: 692 ----SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRA 747 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHI 800 A+ LK V ++++ + L+ + + + + ++ Sbjct: 748 AALLKAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAAR 807 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 + D K L+ + D L+ ++ G++ L G ++ KA +L+ VT DL R A DL + +A Sbjct: 808 VDG-DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 K++ GG GGG+P MAQ+GG + ++A+ VA Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899 >gi|197124228|ref|YP_002136179.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K] gi|196174077|gb|ACG75050.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K] Length = 905 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 371/935 (39%), Positives = 538/935 (57%), Gaps = 76/935 (8%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR F +F+++GH + S+SL+P NDPTL+FTN+GMV FK++FTG+E+ Y Sbjct: 1 MKTLTAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+L+T Sbjct: 61 SRATTAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPA 120 Query: 117 EFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RL TV+ DEEAF+LWK G+ ++I ++ DNFW+M +TGPCG Sbjct: 121 WLGIAKDRLAATVFAGEGTLPWDEEAFELWKAQ-GVPVERIHKLGAKDNFWAMGDTGPCG 179 Query: 171 PCSEIFFDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 PCSE+ + QG IP G + + +R++EIWNLVFMQFE+ LPK S Sbjct: 180 PCSELHYFQGNDIPCAEELAGRRCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPS 239 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRS 281 IDTG GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+ + + RVI DH R+ Sbjct: 240 IDTGAGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARA 299 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 ++FL+ DG+LP+NEGRGYVLRRIMRRA+ + R LG +P + + A+ EMG AYPE Sbjct: 300 TTFLVGDGVLPSNEGRGYVLRRIMRRAIRHGRRLGLEKPFLAAVCGAVIDEMGGAYPETR 359 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------DEILNGD 385 + + IE+ + E+E F +TLD+GL +L+G + L I++G Sbjct: 360 ENRAFIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGK 419 Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445 VAF+LYDT G PLD+ + I RG +D F++ + EQR+R+ G G + + Sbjct: 420 VAFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQRARS--EWKGSGEQGVDDLH 476 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 + + G +F+GY+ + VKAI+ G V A Sbjct: 477 KQIAGELGEVKFLGYEQP-----------------------AARAQVKAILANGARVARA 513 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 G KVE+V D TPFY E+GGQ+GD G G G+ +++ D Q+ G+ H V RG + Sbjct: 514 GKGDKVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEV 573 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 ++ L +D + R + NHSATHLL AL +LG HV Q GS + PD LRFD +H + Sbjct: 574 AVGDAVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQ 633 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 P+T EL ++E VND++ +N T ++ E+A +GA + G KY D VRVV + Sbjct: 634 PVTEEELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP-- 691 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S LCGGTHV +G+I I SE SI +G+RR+ A TG RA + E+L+ Sbjct: 692 ----SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRA 747 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHI 800 A+ LK V ++++ + L+ + + + + ++ Sbjct: 748 AALLKAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAAR 807 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 + D K L+ + D L+ ++ G++ L G ++ KA +L+ VT DL R A DL + +A Sbjct: 808 VDG-DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 K++ GG GGG+P MAQ+GG + ++A+ VA Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899 >gi|171464036|ref|YP_001798149.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193574|gb|ACB44535.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 874 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 383/911 (42%), Positives = 533/911 (58%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 VS IR +L+FF + GH+++PSS ++P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKVSQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F L Sbjct: 61 TTTQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQIFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EAF++W K G+ A++IIRI N DNFW M +TGPCGPCSE Sbjct: 121 KEKLLVTVYAEDDEAFEIWNKQIGVPANRIIRIGDNKGARYASDNFWMMGDTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ IPGG P E+G+RYIEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFYDHGDHIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGI 290 A VLQ +NY+IDLF +L++AS++ + + +VI DH+R SF++ DG+ Sbjct: 241 AAVLQHVHSNYEIDLFVNLLKASKEAVDAAGGENCDPESPSLKVIADHIRVCSFIVVDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P N GRGYVLRRI RRA+ + LG +P L+PAL EM AYPEL A+ + E Sbjct: 301 IPGNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMSDAYPELRAAQDKVSEV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ERF +T+ G+ +LDG L+ G ++++G+ AF+L+DT G PLD+ D+ RG+ Sbjct: 361 IKQEEERFFQTIANGMEILDGALA--GDAKVVDGETAFRLHDTFGFPLDLTTDVCRERGV 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+ +++QR +ARA K+ L K TQF GYD L+ Sbjct: 419 T-VDADGFDVVMQKQRDQARAAGKF-------KVAQGLDYKGRPTQFYGYDTLKHEG--- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V A+ G V +G +V D TPFYAE+GGQ+GD Sbjct: 468 -------------------AKVTALYVDGSAVPCVKAGDVAVIVLDNTPFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + IR + K +F H V G L+ L +D + R NHSAT Sbjct: 509 KGELRNESIRFAVEGTFKIQADVFGHQGEVLEGELKVGDVLNAIVDTRQRTDTMRNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH AL +LG HV Q GS + RFD TH+ PIT ++ IED VN I +N Sbjct: 569 HILHRALREVLGDHVQQKGSLVDAAKTRFDFTHNAPITVEQIHRIEDIVNREILENTATS 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 ++M+ +DA +GA L G KY D VRV+ + S LC GTHVS TG+I L I Sbjct: 629 GKVMSLDDAQKTGAMMLFGEKYGDEVRVLEIGS------SKELCCGTHVSRTGDIGSLKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE + AGIRR+EA+TG A L G ++K+ A+ LK G++V RV ++ + R+ Sbjct: 683 VSEGGVAAGIRRVEAVTGNNALHFLQGLEDKVNEAAAILKTHPGDLVNRVAQLQDSLRQA 742 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K +L + + ++ I+ D+ L+ MDAL+ K+++ I Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGIKVLAARINSADASVLRKTMDALKAKLKTAAI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S++ VT D + + A DL A+ +GG G GG+P MA +GG + +K Sbjct: 803 VLASVQGD-KVSLIAGVTTDSIGKIKAGDLVNFVAQQVGGKG-GGKPEMAMAGGTDPSKL 860 Query: 886 DQAIAGVASFL 896 A+ GV ++ Sbjct: 861 GVALDGVKDWV 871 >gi|254455521|ref|ZP_05068950.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211] gi|207082523|gb|EDZ59949.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211] Length = 888 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 409/912 (44%), Positives = 598/912 (65%), Gaps = 44/912 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++ IR TFL++F+KN H ++ SS+L+P NDPTLMF NSGMV FKN+FTG EK YQ Sbjct: 4 KSLNEIRNTFLKYFEKNDHRIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AWDL+T++F +D Sbjct: 64 TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIHYAWDLITRDFGID 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY ED+EAF WKKI+G + D+IIRI T+DNFWSM ETGPCGPCSEIF+D G+ Sbjct: 124 KNRLYVTVYHEDDEAFNFWKKIAGFNDDRIIRIATSDNFWSMGETGPCGPCSEIFYDHGD 183 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GGLPG+ E+G+R+IEIWNLVFMQFEQ +K++R LPK S+DTGMGLER+A +LQ Sbjct: 184 HLAGGLPGTKDEDGDRFIEIWNLVFMQFEQISKEKRIDLPKPSVDTGMGLERIAALLQGT 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ D FK +I ++ ++ +K + +N+ + RVI DHLR+SSFLIA+G+LP+NEGRGYV Sbjct: 244 HDNYETDHFKKIINSASEILKVKSDNSNLSSFRVIADHLRASSFLIAEGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRR M ++ LLG EP+ +L L EM YPEL++A+ LI+ETL+ E+E+F Sbjct: 304 LRRIMRRGMRHSHLLGSNEPVFFNLFETLRDEMKGNYPELVRAESLIKETLKMEEEKFLV 363 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 LDRG+ +L+ +S + D++L G+VAFKLYDT+G PLD+ +DIL + ++ ID F Sbjct: 364 LLDRGIKILNEEISKI--DKVLPGEVAFKLYDTYGFPLDLTEDILRNKSMS-IDSEKFQS 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++E R A+ + G G E +WF +K+K GAT+F+GY+ Sbjct: 421 LMKESRELAKKNWKGSGDAAVEDVWFGIKDKLGATEFLGYE------------------- 461 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 TN V ++++ + V+E +G + ++ +QTPFY E+GGQ+GDTG G+ + Sbjct: 462 ----TNQAEGAVLSLLKDNKEVDELKNGDEGMIIVNQTPFYGESGGQVGDTGEIAGNDFK 517 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++TDVQKK +FVH+ V G ++ + ++ L I+ + R HSATHLLH +L + Sbjct: 518 FEVTDVQKKLGDLFVHYGKVINGSIQLKDNVELKINVERRDDTRAYHSATHLLHESLRRV 577 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD +H KPI + E+ IE VN+++++ V TR+M ++A+ Sbjct: 578 LGKHVTQKGSLVEPSRLRFDFSHMKPIQTEEIDKIEGFVNNMVSKKSDVKTRLMTPDEAV 637 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY + VRV+S+ +DG S+ LCGGTHV +TG+I IVS+SSI AG+ Sbjct: 638 ENGALALFGEKYGEEVRVLSMGDDDGSYFSTELCGGTHVRNTGDIGKFKIVSQSSIAAGV 697 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-----WEE------YRK 769 RRIEA+ ++ +L +++ + N+ ++ E+ +E + Sbjct: 698 RRIEALRDKQLEDYLNNKEKLSNISSEKNDQIINNLSEQITELGGKPSLDESDQRILIKN 757 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + +ED + +I + + + KEL+ ++D +K++ GI Sbjct: 758 LTKQLETISVNSILEDKTKNIIKDEQINGIKIRFQNVDGLPPKELRKLVDKGKKELSEGI 817 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +++ K+ K + + VT+ L ++F+AV + ++++GG GGGGR AQ+GG + +K Sbjct: 818 VIVFAA-KDDKVGIAVGVTDTLTNKFDAVKFVKTGSEIIGGQGGGGRKDFAQAGGQDKSK 876 Query: 885 ADQAIAGVASFL 896 D+A + + + Sbjct: 877 IDEAFEKLKTLI 888 >gi|296282673|ref|ZP_06860671.1| alanyl-tRNA synthetase [Citromicrobium bathyomarinum JL354] Length = 886 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 426/890 (47%), Positives = 557/890 (62%), Gaps = 34/890 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFLEFF+ H+ + S+ L+P NDPTLMF N+GMVPFKN+FTG E P Sbjct: 1 MTSTNDIRRTFLEFFESRDHKRVASAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPAPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+EF L Sbjct: 61 AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHNAWTLLTEEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF LW+KI+GL D+IIRI T DNFW+M + GPCGPCSEIF+D G Sbjct: 121 DKNRLLATVYHTDDEAFDLWRKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFWDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R++EIWNLVFMQ EQ+ + LP +IDTGMGLER+A VLQ Sbjct: 181 DHIPGGPPGSPEEDGDRFVEIWNLVFMQNEQRGGEIIGDLPNQNIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD D F+ LI+++E I ++RVI DHLR++ FLIADG+LP+NEGRGY Sbjct: 241 VHNNYDTDTFRTLIESTEAQLHADATDYTIASYRVIADHLRATGFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG PLM L+P L EMG AYPEL + + LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKTPLMHRLVPTLVGEMGQAYPELGRGQALIEETLEREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD LGK + L+G+VAFKLYDT+G P D+ +D L +G +D F+ Sbjct: 361 ETLEKGLRLLDEATGSLGKGDQLDGEVAFKLYDTYGFPYDLTEDALRGQG-IAVDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR ARA G G ++WFS+ E+ GAT+F GY +G Sbjct: 420 AAMARQREAARAAWKGSGQAADSEVWFSIAEREGATEFTGYSATQG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V AIV+ G V A +G+ V ++ +QTPFY E+GGQ GD+G Sbjct: 466 ---------EGQVVAIVKDGVEVTSAAAGEDVVLLTNQTPFYGESGGQSGDSGSITTHDG 516 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R+ + D K + H +E G +R + LT+D Q R ++ NHSATHLLH AL Sbjct: 517 LRIAVRDTGKPLGRLHTHQGKIEAGEVRVGDEVRLTVDEQRRNRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG V+Q GS + D LRFD ++ + I L IE +VN I N V TR+M +D Sbjct: 577 RRLGDQVTQKGSLVAEDYLRFDFSYPEKIDREGLDRIEQDVNSQIRGNSEVGTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+A+GA AL G KY D VRV+S+ + S LCGGTHV TG+I L I+ ESS+ + Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRDADADFSIELCGGTHVERTGDIGLFAIIGESSVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A +L + L ++ L + V +++ + + + L+ A K Sbjct: 697 GVRRIEALTGNAASEYLRTRANALNEISGKLGATPDAAVAQLDALLAQRKTLERELADAK 756 Query: 779 LQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L + +S I V F +I +D KEL+ ++DA ++++ SGI + Sbjct: 757 RALALSGGGGDGPQVSDETINGVTFSGQVIEGLDPKELRPLLDAAKQRLGSGIAAICAT- 815 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + KA+ + VT+DL DRF+AV+L R LGG GGGGR MAQ GGP+ Sbjct: 816 NDGKAAFAVAVTDDLTDRFSAVELVRAGVAALGGKGGGGRADMAQGGGPD 865 >gi|294669536|ref|ZP_06734603.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308449|gb|EFE49692.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 873 Score = 860 bits (2221), Expect = 0.0, Method: Composition-based stats. Identities = 364/912 (39%), Positives = 524/912 (57%), Gaps = 58/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +V+ DH+RS SFLIADG++ Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + I E L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D FN+ + A + K L T+F GY+ Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + E VEE +G+ VV +QTPFYAE+GGQ+GD Sbjct: 460 -------------KRSQDTKIIALYKGSEAVEELQAGEVGVVVLEQTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + R ++ D QK + V G L+ ++ ID R + NHS TH Sbjct: 507 GFIVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + RFD++H++ I++ E+ +E VN I N+PV Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHTQGISAEEIAEVERRVNAAIIANVPVKV 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ EDA SGA L G KY D VRV+++ G +S LCGGTHV+ TG+I I+ Sbjct: 627 ETMSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AGIRR+EAITG A + Q+ +K++ + +K +V+ +++ + L Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + + ++ I + L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAVKL 858 Query: 886 DQAIAGVASFLK 897 + + V ++K Sbjct: 859 PEMLGSVEDWVK 870 >gi|255065962|ref|ZP_05317817.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256] gi|255049873|gb|EET45337.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256] Length = 874 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 362/912 (39%), Positives = 521/912 (57%), Gaps = 58/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +V+ DH+RS SFLIADG++ Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D FN+ + A + K L T+F GY+ Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYAGADTEFTGYE---------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + E V+E +G+ VV +QTPFYAE+GGQ+GD Sbjct: 460 -------------KRSQDTKIIALYKASEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++ D QK + V G L+ ++ ID R + NHS TH Sbjct: 507 GFIFAGENCFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + RFD++H + I++ E+ +E VN I N+PV Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ EDA SGA L G KY D VRV+++ G +S+ LCGGTHV+ TG+I I+ Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AGIRR+EAITG A + Q+ +K++ + +K +V+ +++ + L Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + + ++ I + L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858 Query: 886 DQAIAGVASFLK 897 + + V ++ Sbjct: 859 PEMLGSVEGWVN 870 >gi|90420928|ref|ZP_01228833.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1] gi|90334903|gb|EAS48675.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1] Length = 890 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 467/894 (52%), Positives = 607/894 (67%), Gaps = 39/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F KN HE + SS L+P NDPTLMFTN+GMV FKN+FTG E YQ Sbjct: 1 MSGVNEIRSAFLDYFAKNDHERVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVETRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 RL +TVY EDEEA LW+KI+GLS D+IIRI+T+DNFW+M ETGPCGPCSEIFFD Sbjct: 121 PADRLLVTVYSEDEEAAALWRKIAGLSDDRIIRISTSDNFWAMGETGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQFEQ + R LP+ SIDTGMGLER+A +LQ Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQFEQLSADNRVELPRPSIDTGMGLERIAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI + E G + EG+++ +HRVI DHLRS++FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIASVEATIGSRAEGDSVASHRVIADHLRSTAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A++LG EP++ +LP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAKMLGAREPVLYKMLPTLVAEMGRAYPELVRAEALISETLKLEERRFL 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LL + L+G+ AFKLYDT+G PLD+ QD L RG +D+ +FN Sbjct: 361 QTLDRGLSLLTDATEGMDAGAKLSGETAFKLYDTYGFPLDLTQDALRQRG-IEVDLDAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ AR G G +E +WF ++E+ GAT+F+GYD Sbjct: 420 TAMERQKAEARKSWTGSGEAASETVWFPIRERVGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V A +G +V +V +QTPFY E+GGQLGDTG GDG+ Sbjct: 462 -----TERAEGSVMAVVRNGTEVPAAGAGDEVAIVLNQTPFYGESGGQLGDTGIMRGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I D QK AEG+FVH V+ G ++ M L L +D+ R ++ NHSATHLLH L Sbjct: 517 EIVIADTQKFAEGLFVHRGKVKSGTVKAGMPLDLIVDHGRRTKIRANHSATHLLHEGLRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHV+Q GS + P+ LRFD +H KPI EL +E N I+ QN PV TR+M +DA Sbjct: 577 ILGSHVAQKGSMVAPERLRFDFSHPKPIEPGELAEVERLANGIVLQNAPVETRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IASGA AL G KY D VRVVS+ + G S LCGGTHV++TG+I L++I+ ES Sbjct: 637 IASGAMALFGEKYGDEVRVVSMGTGEEGEKAGKTFSIELCGGTHVNATGDIGLVHILGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TGQ AR HL+ QD +++ +AS LKVS + R+E + EE R+L+ Sbjct: 697 AVGAGVRRVEALTGQAARDHLLAQDARVRQMASILKVSPADAPARLEAVVEERRRLEREL 756 Query: 775 AKRKLQLNVEDLSC--------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + +L + +A V F+ +++ V K+LK ++D + ++ SG++ Sbjct: 757 AEARKRLALAGDGASGEGGSASKVVAGVGFLGRVLNGVAGKDLKGLVDEAKTQLGSGVVA 816 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 V + KASV++ VT DL DRF+AV L R ++ +GG GGGGRP MAQ+GGP Sbjct: 817 FVSVDA-GKASVVVGVTADLTDRFDAVALVRDASVAIGGKGGGGRPDMAQAGGP 869 >gi|296535675|ref|ZP_06897850.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957] gi|296263999|gb|EFH10449.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957] Length = 881 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 429/895 (47%), Positives = 573/895 (64%), Gaps = 33/895 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFL++F ++GH ++ SS L+P NDPTLMFTNSGMV FKN+FTGQEK Y Sbjct: 1 MTSSNDIRATFLDYFARHGHTVVESSPLVPRNDPTLMFTNSGMVQFKNVFTGQEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW LLT++F L Sbjct: 61 ATTAQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWTLLTRDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TV+ EDE+A LW+KI+GL +KIIRI T+DNFW M +TGPCGPCSEIF+D Sbjct: 121 PKEKLLVTVFSEDEDAAALWRKIAGLPDEKIIRIPTSDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+ ++ R LP+ SIDTGMGLER A +LQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYLEEPAGTRNPLPRPSIDTGMGLERFAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDID F+ LI AS + TG + +G ++HRV+ DHLRS +FLIADG++P+NEGRGY Sbjct: 241 KHDNYDIDTFRALILASAEATGQEADGPFKISHRVVADHLRSGAFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRAM +A ++G EPL+ LLPAL +MG+AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRILRRAMRHAHMMGTKEPLLYRLLPALIRQMGAAYPELVRAEALISETLKLEENRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL LG L GDVAFKLYDT+G PLD+ QD L G +D+ F Sbjct: 361 SLLERGLGLLAEESGKLGDKGTLPGDVAFKLYDTYGFPLDLTQDALRGEG-KAVDVAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ RARA G G TE +WF LKEK GAT+F+GY Sbjct: 420 AAMAEQKKRARAAWAGSGEAATETLWFDLKEKLGATEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G +VE A G +V VV +QTPFYAE+GGQ+GDTG G Sbjct: 461 ----STEKAEGEILAVVANGAVVERAGPGTEVAVVLNQTPFYAESGGQVGDTGSITGADG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +K G+FVH VE G + + ++ R + +HSATHLLH AL Sbjct: 517 LRIAVRDTQKKLGLFVHLGTVEAGEAAPGKPVQAEVAHERRSAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS PD LRFDV+ P+ +L +E VN I +N V+TR+M E A Sbjct: 577 RLGTHVAQKGSLNAPDRLRFDVSQPTPMQPEDLAWVEAEVNARIRENAEVITRLMTPEAA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + +GA AL G KY D VRVV + ++ GV+S LCGGTHV TG+I L IV+E Sbjct: 637 VQAGAMALFGEKYGDEVRVVGMGHDPEATEKHGVYSLELCGGTHVRRTGDIGLFKIVAEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TG A + + + + L+ A+ LKV+ + R+ + EE RKL+ Sbjct: 697 AVSAGVRRVEAVTGAAALALIEAEQKALREAAAALKVNPAELPARIASLVEERRKLERDV 756 Query: 775 AKRKLQLNV--EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A+ + +L + S ++ + F + + EV ++LK + +A+ K ++ LV + Sbjct: 757 AELRKKLATGGSEASVEEVGGLRFSARNLGEVPPRDLKGLAEAILKSGTVDVVALVSTA- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 E KAS++ V + R +AV L R + +GG GGGGRP MAQ+GGP+ +KA+ Sbjct: 816 EGKASLVAGVADSAKGRADAVALVRAGSAAVGGKGGGGRPDMAQAGGPDADKAED 870 >gi|225849840|ref|YP_002730074.1| alanyl-tRNA synthetase [Persephonella marina EX-H1] gi|225645058|gb|ACO03244.1| alanyl-tRNA synthetase [Persephonella marina EX-H1] Length = 878 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 356/910 (39%), Positives = 530/910 (58%), Gaps = 46/910 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +FL +F++ GH + S+S+IP DPTL+F N+GMVPFKN+F G E+ Y Sbjct: 1 MKFLTANQIRESFLRYFEERGHTRVKSASIIPETDPTLLFVNAGMVPFKNVFLGLEEKPY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + + QK R GKHNDLDNVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ Sbjct: 61 KRAVSCQKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKREAIQFAWEYLTEVL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + +L ++V++ED+EAF++W K+ GL +KI R+ DNFWSM ETGPCGPCSEI++D Sbjct: 121 EIPEEKLLVSVFEEDDEAFEIWNKVIGLPEEKIHRLGVEDNFWSMGETGPCGPCSEIYYD 180 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +GE G S E RY+E+WNLVFMQ+ + LPK +IDTGMGLER+A+VLQ Sbjct: 181 RGEAF-GNPELGSPEDIRYLEVWNLVFMQYNRDKDGRLTPLPKPNIDTGMGLERIASVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----HRVIVDHLRSSSFLIADGILPA 293 +NY+ DLF LI+ ++ V+G Y+ + + RVI DHLR+ +FLI+DG+ P+ Sbjct: 240 GVNSNYETDLFMPLIEFAQSVSGKSYDPEDPGSENTVAMRVIADHLRAITFLISDGVFPS 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ Y LG P + + + M YPELI + I+ ++S Sbjct: 300 NEGRGYVLRRILRRALRYGMELGIERPFLFEGVDVVVDIMKEPYPELIGNRSFIKNLVKS 359 Query: 354 EDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL +GL +L ++ + + G AF LYDT+G P+D+++DI G Sbjct: 360 EEEKFIKTLRKGLEILYDIIQKAKKEGRNHITGKEAFLLYDTYGFPVDLLEDIARDNGF- 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 G+DI + + LEEQ+ RARA + + ++ LK K F+GY+ L Sbjct: 419 GVDIAEYYKLLEEQKERARASW-KSQAKEIKPVYLELKNKLPENVFVGYERLEVDD---- 473 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + +++++ V+ G+ E+V D TPFY E GGQ+GD Sbjct: 474 ------------------AQILSVLKEDREVDTLHEGETGEIVLDVTPFYPEKGGQVGDR 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G GDG + D Q EGI VH V G ++ ++ +D R + +H+ATH Sbjct: 516 GIIEGDGFLFDVVDTQTPVEGIIVHRGKVIHGTVKKGETVSAKVDKDTRLDIMRHHTATH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + PD LRFD TH + +T ++K +E+ VN+ I +N PV+ Sbjct: 576 LLHAALRNLLGDHVKQAGSLVHPDYLRFDFTHFESLTDEDIKRVEELVNEEIMKNEPVIC 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M ++AI SGA A+ KY D VRV+S S+ LCGGTHVS TG+I I+ Sbjct: 636 KEMPYDEAIKSGAIAIFDEKYGDTVRVISAG------ISTELCGGTHVSRTGDIGYFKII 689 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+++ +G RRIEA+ G++A + + ++++ L + ++ ++E + + ++ Q Sbjct: 690 SETAVASGTRRIEAVAGRKAVERGLREHFLIENVKRALTAKEDEIIDKIETLKLKLKEAQ 749 Query: 772 LIHAKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K + V+ L+ + + + + +L+ + D + K+ ++M+ Sbjct: 750 REIENIKKKSVVDRITDILTVEEKEGIKIAYGSVEGLQPNDLRDLADVARSKLGRSVVMI 809 Query: 828 VGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + KEK K + ++ V++DL DR A ++ + A L GG GGGRP MAQ GG +K Sbjct: 810 ASVDKEKNKVNFIVAVSKDLTDRIKAGEIVKKVAPAL-GGKGGGRPDMAQGGGTEPSKLK 868 Query: 887 QAIAGVASFL 896 +A + Sbjct: 869 EAFNIFRKEI 878 >gi|5834358|gb|AAD53924.1|AF179611_8 alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 888 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 447/916 (48%), Positives = 583/916 (63%), Gaps = 47/916 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPS----SSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP 56 M + IR +F F+K PS + L+P NDPTLMF N+GMVPFKN FTG E Sbjct: 1 MITTNEIRRSFSRIFRK----EWPSDSTIAPLVPQNDPTLMFVNAGMVPFKNTFTGLESR 56 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TK Sbjct: 57 PYKTATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 E+ LD RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF Sbjct: 117 EWGLDPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIF 176 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +D G IPG + E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+V Sbjct: 177 YDHGPEIPGASGLADEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASV 236 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEG Sbjct: 237 LQGVHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEG 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ Sbjct: 297 RGYVLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEET 356 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +TL GL +L HL + L G VAF+LYDT+G P D+ D L AR L +D Sbjct: 357 RFRQTLANGLKILKDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQA 415 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A+ EQR ARA G G +++IWF + ++ G T+F GY Sbjct: 416 GFDAAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT--------------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G G Sbjct: 461 --------AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITG 512 Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH Sbjct: 513 NNDLKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHA 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HVSQ GS ++ + LRFD +H K ++ EL +IE VN I N V TR+M Sbjct: 573 ALRDQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMT 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYI 710 E A+ +GA AL G KY + VRV+S+ + S LCGGTHVS+ G+I L +I Sbjct: 633 PESAVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHI 692 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE+++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK Sbjct: 693 VSETAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKC 752 Query: 771 QLIHAKRKLQLNVED--------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 Q A +K + K+ +F+ +I ++ K L ++D +K I+S Sbjct: 753 QRSLADQKALAFANANCGQGGNNAAPDKLGAYHFIGQVIEGLEPKALLGLIDENKKIIES 812 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+I L+ + E +ASV I V++ L + +AVDL R + + LGG GGGGRP MAQ GGPNG Sbjct: 813 GVIALITV-NEGRASVAIGVSDSLKGKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNG 871 Query: 883 NKADQAIAGVASFLKK 898 N+A QA+ V + L+K Sbjct: 872 NEAAQALEAVKALLEK 887 >gi|330993337|ref|ZP_08317272.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1] gi|329759367|gb|EGG75876.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1] Length = 861 Score = 859 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 421/882 (47%), Positives = 561/882 (63%), Gaps = 31/882 (3%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y TT QK VRAGGKHNDLDNVG Sbjct: 1 MPSSSLVPHNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNVGY 60 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142 T RHHTFFEM+GNFSFG YFK AI+LAW L+T F L + +L TVY +DEEA LW++ Sbjct: 61 TARHHTFFEMMGNFSFGDYFKAEAIELAWKLVTGTFGLPKEKLLTTVYADDEEAASLWRR 120 Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIW 201 I+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G + GG P E+G+R+ EIW Sbjct: 121 IAGLSDDRIIRIPTSDNFWRMGDTGPCGPCSEIFYDHGPEVAGGPPGSPDEDGDRFTEIW 180 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 NLVFMQ+ + R LP+ SIDTG+GLER A +LQ K +NYD D F+ LI AS +VTG Sbjct: 181 NLVFMQYFENPPGTRSPLPRPSIDTGLGLERFAAILQGKRDNYDTDTFRALILASAEVTG 240 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 +G +HRV+ DHLRS+SFLIADG+LP+ +GRGYVLRRIMRRAM + ++G TEP Sbjct: 241 QDPDGPFNASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTTEPT 300 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+PAL +MG AYPEL+ A+ LIE T++ E+ERF LDRGL LL LG Sbjct: 301 FYKLVPALIRQMGEAYPELVHARALIEGTMKGEEERFKAMLDRGLSLLADETERLGDGAP 360 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L GDVAFKLYDT G PLD+ QD L +D+ FN A+E QR RARA G G T Sbjct: 361 LPGDVAFKLYDTFGFPLDLTQDALRGSSH-NVDVAGFNAAMEVQRKRARAAWSGSGDSAT 419 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 E +WF ++ +GAT+F+GY T + V+ ++ Sbjct: 420 ETVWFEARDTFGATEFLGYT-----------------------TETSDAEVQTVIVDNAQ 456 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 VE A G KV ++ +QTPFY E+GGQ+GDTG G+ + ITD QKK + VH+ V Sbjct: 457 VESAGPGTKVALLLNQTPFYGESGGQVGDTGTITAPGLHIAITDTQKKLGDLLVHYGTVI 516 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G ++ M++ +D+ R + +HSATHLLH A+ LG+HV+Q GS PD LRFDV Sbjct: 517 EGTVKPGMAVTAQVDHDRRSAIRAHHSATHLLHEAMRRRLGAHVTQKGSLNAPDRLRFDV 576 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 + +PIT EL IE VN I +N V TR M E+AI GA AL G KY D VRVVS+ Sbjct: 577 SQPRPITPEELADIEAEVNARIRENTDVTTRHMTPEEAIEQGAMALFGEKYGDEVRVVSM 636 Query: 682 EYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + G S LCGGTHV TG+I L I SES + +G+RRIEA+TG A++ + + Sbjct: 637 GGPEEGRAGWSIELCGGTHVRRTGDIGLFRITSESGVSSGVRRIEAVTGLAAQNATIATE 696 Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNF 796 E+L +A+ L+V R+ + EE + ++ + + +L S + + Sbjct: 697 ERLNQIAAMLRVPPAETPERLAVLLEERKVMERQISDLQRKLASGSQAAASIVDVGGIKL 756 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + + E+ +KELK + D+L+K+I SG+I+L+ + + K S+++ T DL ++ +AV L Sbjct: 757 DARNVGELPAKELKPLADSLRKEIGSGVIVLISTA-DGKGSIVVAATPDLGEKVDAVALV 815 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 R ++ +GG GGGGR MAQ+GGP+ + + A+ V + L++ Sbjct: 816 RAASTAMGGKGGGGRRDMAQAGGPDTTRVEAALEAVRAALQQ 857 >gi|229592147|ref|YP_002874266.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25] gi|229364013|emb|CAY51570.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25] Length = 872 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 380/891 (42%), Positives = 524/891 (58%), Gaps = 53/891 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y Sbjct: 1 MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT L Sbjct: 61 TSSQKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY D+EA+ +W + G+ +++IRI N DNFW+M +TGPCGPC+E Sbjct: 121 KEKLWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 180 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTGMGLER+ Sbjct: 181 IFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + V+Q +NY+IDLF +L+ AS G + + +V+ DH+RS FLIADG+LP+ Sbjct: 241 SAVMQHVHSNYEIDLFTNLLSASAAAIGCA--NESQSSLKVVSDHIRSCGFLIADGVLPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA + LG T ++ AL EMG A+PEL Q + IE L++ Sbjct: 299 NEGRGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGEAFPELKQQQGNIERVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTL+ GL +L+ L+ L ++ GDV FKLYDT+G P+D+ DI R L I Sbjct: 359 EEEQFSKTLEHGLKILEQDLAELK-GTVVPGDVVFKLYDTYGFPMDLTADIARERELT-I 416 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR RAR+ S + +L + T+F GY G+ Sbjct: 417 DEAGFEREMEAQRVRARSASSFG------LDYNTLVKVDVPTEFTGYKATVGA------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + A+ + G+ V+ G + VV DQTPFYAE+GGQ+GD G Sbjct: 464 ----------------AKIVALYKDGKSVDVLSEGDEAVVVLDQTPFYAESGGQIGDCGF 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D K F+HH ++ G L + +D R ++NHSATHLL Sbjct: 508 LSSTSGRFEVRDTTKTGG-AFLHHGVLVLGNLTVGAPVDTQVDADVRHATALNHSATHLL 566 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I ++K++ED VN I +N V T Sbjct: 567 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDVVNAEIRRNTAVETEE 626 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I+SE Sbjct: 627 TDIETAKAKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 683 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQ 742 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + + S + DV ++ + D K L +++D L+ K+ +I+L Sbjct: 743 LEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILLG 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + E K ++ VT+DL + A DL + +A +GG G GGRP MAQ GG Sbjct: 803 SVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 851 >gi|56696902|ref|YP_167264.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] gi|81558517|sp|Q5LRU1|SYA_SILPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56678639|gb|AAV95305.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] Length = 890 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 436/914 (47%), Positives = 564/914 (61%), Gaps = 44/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GH ++PSS L+P NDPTLMFTNSGMV FKN FTG +K Y Sbjct: 1 MPSLNDIRSTFLNYFAKQGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T++FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELITRDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TVY D+EAF++WKK G+ +IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKK-VGVPESRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEKFEDGSMVDLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADATSVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+ L +MG+AYPEL +A+ LIEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVRTLVGQMGAAYPELGRAQALIEETLLLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L ++ L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELTALPEEAPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G T IWF + + GAT F+GYD Sbjct: 419 AAMAEQKAKARAAWAGSGESTDNAIWFDVLDVAGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T A+V G + + G VV +QTPFY E+GGQ+GDTG Sbjct: 461 -----TEKAEGQALALVVDGALSDRIAEGGSGWVVTNQTPFYGESGGQVGDTGVIRRLEN 515 Query: 540 R----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R L + ++ H +ERG L ++ L +D+ R + NHSATHLLH Sbjct: 516 RDHVALVEDSRKFADGKVYAHKVTMERGALAKGDAVELEVDHARRSAIRANHSATHLLHE 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS D LRFD +H+K +T AEL + VN I QN V TRIM Sbjct: 576 ALREALGDHVAQRGSLNAADRLRFDFSHAKALTEAELAQVGAEVNRFIRQNSRVETRIMT 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709 +DA A GA AL G KY D VRVVS+ DG S LCGGTHV+ TG+I + Sbjct: 636 PDDARAIGAQALFGEKYGDEVRVVSMGRAETGKGADGKTWSIELCGGTHVAQTGDIGMFV 695 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ +S+ AG+RRIEA+TGQ A HL + +L + + LK V RV + +E + Sbjct: 696 LLGDSASSAGVRRIEALTGQAAFDHLSQEGARLSQVTAMLKAQPAEVAERVRALMDERKA 755 Query: 770 LQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 LQ A+ + L H++ V F++ ++S V K+L +++D + ++ S Sbjct: 756 LQNEVAQLRRDLAMAGGAGQGGGAETHEVGGVPFLAQVLSGVSGKDLPALIDEHKSRMGS 815 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G ++L+ + K A VTEDL R +AVDL + + LGG GGGGRP MAQ GG + Sbjct: 816 GAVLLIADAGGKAAV-AAGVTEDLTARVSAVDLVKAAVAALGGKGGGGRPDMAQGGGQDA 874 Query: 883 NKADQAIAGVASFL 896 KAD AI L Sbjct: 875 GKADAAIKAAEQVL 888 >gi|190573725|ref|YP_001971570.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia K279a] gi|205830222|sp|B2FL33|SYA_STRMK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|190011647|emb|CAQ45266.1| putative alanyl-tRNA synthetase [Stenotrophomonas maltophilia K279a] Length = 882 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 381/892 (42%), Positives = 533/892 (59%), Gaps = 49/892 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++TG + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+P L +MG AYPEL A + L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAVDTVTRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + ++ G AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I F+ A+E+QR ARA G + L T F+GYD L+ Sbjct: 424 IAGFDAAMEQQRETARAAGKF---GGGVTLPAELVATLSPTLFLGYDRLQADGL------ 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++ G V+ A +G V V+ +QTPFYAE+GGQ+GDTG Sbjct: 475 ----------------TVLALLKDGRPVQSADAGDAVIVITNQTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G+RL + D QK A H + G L+ L +D + R +NHSATHLLH Sbjct: 519 TGNGVRLAVDDTQKFAGQFHGHVGTLSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + PD LRFD +H +PI++ EL IE VN + N M Sbjct: 579 AALREVLGSHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A ++ ++ +L A L S +VV ++ + + ++L+ Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLEREL 753 Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K ++ ++A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 754 EAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ KA+++ V + + A +L A + GG GGGRP +AQ GG + Sbjct: 814 A-QDGKAALVAGVNGSAMGKVKAGELLSHIASQI-GGKGGGRPDLAQGGGED 863 >gi|91788770|ref|YP_549722.1| alanyl-tRNA synthetase [Polaromonas sp. JS666] gi|123355561|sp|Q129G8|SYA_POLSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91697995|gb|ABE44824.1| alanyl-tRNA synthetase [Polaromonas sp. JS666] Length = 878 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 366/909 (40%), Positives = 529/909 (58%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR +FL+FF GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 11 TVADIRKSFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 70 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT + L Sbjct: 71 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTDVYKLPA 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY +D+EA+ +W K GL ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 131 DKLWATVYIDDDEAYDIWTKEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSEI 190 Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS E +G+RYIEIWN VFMQF+ Q LP +DTGMGLER+A Sbjct: 191 FYDHGPEIAGGPPGSPEQDGDRYIEIWNNVFMQFDMQPDGSVKPLPAPCVDTGMGLERLA 250 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG K N + RVI DH+R+++FL++DG+ P+N Sbjct: 251 AILQHVHSNYEIDVFDALIKAAARETGEKD--LNNKSLRVIADHIRATAFLVSDGVNPSN 308 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L MG AYP+L + I L++E Sbjct: 309 EGRGYVQRRIIRRAIRHGYKLGKKTPFFHKLVADLARLMGDAYPKLRTDEARITAVLKAE 368 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL+ G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RG +D Sbjct: 369 EERFFETLEIGMTILDTALA--GGAKVLPGDVAFKLHDTYGFPLDLSADVCRERG-VDVD 425 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A++ Q+++ARA K+ +L+ F GY+ L Sbjct: 426 ETGFNAAMDRQKNQARAAGKF-------KMDRALEYAGSGNTFTGYERLE---------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + A+ G V GQ VV D TPFYAE+GGQ+GD G Sbjct: 469 -------------ETAKIVALYADGVPVAALTKGQSGVVVLDTTPFYAESGGQVGDEGEL 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I + D K ++ HH VE+G L + ++ R NHSATHL+H Sbjct: 516 ISGSAHFAVGDTLKIKSDVYGHHGTVEQGTLNVGDHVNARVNLAVRAATVRNHSATHLMH 575 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T +++ IE VN I N+ +M Sbjct: 576 KALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTDDQIREIEARVNAEILSNVATDASVM 635 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY D+VRV+S+ S LCGGTHV+ TG+I L IV+ES Sbjct: 636 DMEAAQKTGAMMLFGEKYGDKVRVLSIGS------SKELCGGTHVTRTGDIGLFKIVAES 689 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RR+EA+TG+ A ++L + +++ A LK S + R+ ++ ++ + L+ Sbjct: 690 GVAAGVRRVEAVTGENALAYLQSLESTVQAAAGSLKASPTELQQRIGQVLDQVKSLEKEI 749 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + + ++ + D++ L+ MD L+ K+++G+ +L Sbjct: 750 AALKGKLASSQGDELMAQAFDVKGLKVLAARLEGADARTLRETMDKLKDKLKTGVFVLAA 809 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + VT D + A +L A+ +GG G GG+ MA +GG + ++ D A+ Sbjct: 810 VDGN-KVQIAAGVTADSVTVVKAGELVNFVAQQVGGKG-GGKADMAMAGGTDASRLDDAL 867 Query: 890 AGVASFLKK 898 V +++ + Sbjct: 868 KSVRAWVTE 876 >gi|218780784|ref|YP_002432102.1| alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] gi|218762168|gb|ACL04634.1| Alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] Length = 875 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 362/908 (39%), Positives = 535/908 (58%), Gaps = 45/908 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R+ FLE+F+KN H ++ SSSL+P +DPTL+FTN+GMV FK F G++K Y Sbjct: 1 MTGNEVRSAFLEYFKKNDHRVVKSSSLVPQDDPTLLFTNAGMVQFKRTFLGEDKRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+L+WDLL +F L Sbjct: 61 ATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKELAIELSWDLLVNKFGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L++++Y +D+EA LW+ G+ ++I+R+ DNFWSM +TGPCGPCSEI D+GE Sbjct: 121 ADKLWVSIYLDDDEAGLLWRDKIGVPEERIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVFMQ+ + + LP+ SIDTGMGLER+ ++LQ Sbjct: 181 AFGCDSPDCAVGCDCDRYLEIWNLVFMQYNRDETGKMTPLPRPSIDTGMGLERICSILQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 NY DLF + +++G K + V +VI DH R+++FL+ DGILP+NEGR Sbjct: 241 ADTNYGTDLFTPIFNRIGELSGKKLGDSKTDDVCMKVIADHSRAAAFLVGDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA+ Y R LG+ + + + A+C MG AYP+L + + I + +E+ R Sbjct: 301 GYVLRRIMRRAIRYGRQLGFNKSFLHETVAAVCDSMGGAYPDLTEGRSFITNVIVNEENR 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD+GL +L+ L + ++ ++G+V FKLYDT+G P+DI++D++ +G +D Sbjct: 361 FSETLDKGLSVLNDALGEMEAKGEKEISGEVIFKLYDTYGFPVDIVEDVVRDKG-IVLDR 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++EQ+ ++R+ G+G + + SL + +F GY G Sbjct: 420 DGFETRMKEQKEKSRSTVAFEGAG---EAFASLSSQGIKCEFQGYHGTSGC--------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V +V+ G+ V+EA +G V VV + TPFY E+GGQ+GD G Sbjct: 468 --------------SKVLLVVKDGKEVQEAQAGDAVSVVTEATPFYGESGGQMGDLGVIT 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG+ L++ K G+ +H V +G + ++ L +D R+ + NH+ATHLLH Sbjct: 514 ADGLELEVVKTLKDPTGLIIHEGKVVKGKIAKGQNVDLKVDEAARQATARNHTATHLLHA 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q GS + P+ LRFD TH P+T E IE VN+ I NL V T M+ Sbjct: 574 ALREVVGDHVKQAGSLVGPERLRFDFTHFSPLTPEETVKIETLVNERIRDNLDVNTVEMD 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A SGA AL KY D VRVVS+E S LCGGTH +G++ IV ESS Sbjct: 634 ADQARESGAMALFEEKYGDTVRVVSMEG-----FSKELCGGTHTERSGDVGFFVIVGESS 688 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TG A ++ G L ++ LK + ++E++ + ++ + Sbjct: 689 VAAGVRRIEALTGAGAVEYVHGLMSNLNKVSGLLKEKPETLPDKIEKLLAQNKQQEKEIN 748 Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K ++ + D ++ ++ + ++ + D + K+QSGI++L G Sbjct: 749 ALKAKIAAKASESVDDEIREVRGAKMIAKKVEVDSPAAMRDLADKFRDKLQSGIVVL-GS 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 KA ++++VT+DL +F A ++ + AK +GGGG GGRP MAQ+GG QA+ Sbjct: 808 EVNGKALLIVMVTKDLTKQFQAGNIIKHVAKEVGGGG-GGRPDMAQAGGSKPENLSQAME 866 Query: 891 GVASFLKK 898 +++ Sbjct: 867 KAYQIVEE 874 >gi|310815943|ref|YP_003963907.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25] gi|308754678|gb|ADO42607.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25] Length = 868 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 431/868 (49%), Positives = 565/868 (65%), Gaps = 40/868 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL F+ +NGH ++PSS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 24 MTSLADIRSTFLNFYARNGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNTFTGVETRDYVR 83 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTK+F + Sbjct: 84 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKESAIPFAWELLTKDFGI 143 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ RL +TVY D+EA +WKK++GLS D+IIRI TNDNFW M TGPCGPC+EIF+D G Sbjct: 144 NKDRLLVTVYHTDDEAANIWKKVAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 203 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+R+IEIWNLVFMQFEQ R LPK SIDTGMGLER+ +LQ Sbjct: 204 DHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQFEDGSRTGLPKPSIDTGMGLERIGALLQG 263 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 264 KHDNYDTDLMRALIEASAHATSNDPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 323 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL EMG+AYPEL +A+ LIEETLR+E+ RF Sbjct: 324 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGAAYPELNRAQALIEETLRAEETRFK 383 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L D L G AFKLYDT+G PLD+ QD L + +D F Sbjct: 384 QTLDRGLRLLDDELGQLPGDAALPGATAFKLYDTYGFPLDLTQDALREKNRT-VDTDGFT 442 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +WF L E+ G T+F+GYD L+ Sbjct: 443 AAMNEQKAKARAAWAGSGEQADASVWFDLVEQNGTTEFLGYDTLQ--------------- 487 Query: 480 PPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 V AIV G ++E A G +V+VV +QTPFYAE+GGQ+GD G D Sbjct: 488 --------AEGQVTAIVAPAGALMERAEIGAQVQVVLNQTPFYAESGGQVGDAGLLRTDT 539 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++TD KK G F H V G + VLT+D R Q++ NHSATHL++ AL Sbjct: 540 GVIEVTDT-KKHAGAFAHIGTVREGFVAVGQGAVLTVDATRRGQIAANHSATHLVNEALR 598 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS PD LRFD +H+K +++ E+ ++ +VN I QN PV TR+M ++ Sbjct: 599 AALGDHVAQRGSLNAPDRLRFDFSHNKALSADEIAKVQADVNAYIRQNTPVETRVMTPDE 658 Query: 659 AIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 A GA AL G KY D VRVVS+ D +S LCGGTHV+ GEI ++ Sbjct: 659 ARDLGAQALFGEKYGDEVRVVSMGRLDGSNKGVDKNTYSLELCGGTHVTRLGEIGAFVLL 718 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S+S+ AG+RR+EA+TGQ A HL Q+ L S+AS LK S +VV RV + +E + L Sbjct: 719 SDSASSAGVRRVEALTGQAALDHLAAQEAALISVASLLKTSAADVVERVRALVDERKALS 778 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + L + D++ V+ + ++S V K+L +++D+ + ++ SG+++ Sbjct: 779 NEVAQLRRDLAMAGGAKNDVAIRDAGGVSLQAQLLSGVTGKDLPALVDSFKSELGSGVVL 838 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVD 854 L+ + KA+V VT DL D+ +AV+ Sbjct: 839 LIA-DVDGKAAVAAGVTADLTDKVSAVE 865 >gi|205830260|sp|A5D3F4|SYA_PELTS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 877 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 355/909 (39%), Positives = 548/909 (60%), Gaps = 49/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK FTG KP Y V Sbjct: 1 MTGNEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+++VG+T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L Sbjct: 61 TTCQKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+I+++ +D+EAF++W K G+ A +I+R+ + NFW + GPCGPCSEI+ D G Sbjct: 117 ADKLWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGA 175 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++EIWNLVF+QF + + L IDTG GLER+A+V+Q Sbjct: 176 ERGCGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQG 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N+D DLF+ ++ + + G+KY +G V +VI DH R+ +F +ADG LP+NEGR Sbjct: 236 VPTNFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + RLLG +P + + A+ +MG YPEL+ + + +R E+ER Sbjct: 296 GYVIRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEER 355 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 FG+TL +G +L+ +++ + +++G+ AF+LYDT+G PL++ Q++ +GL +D Sbjct: 356 FGETLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDT 414 Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +A+EEQR RAR+ + ++ ++E+ G T F+GYD L Sbjct: 415 DGFGRAMEEQRQRARSARQETDYISGRDAMFKKMREEVGETVFVGYDALE---------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G Sbjct: 465 -------------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKV 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++I +V K E +FVH V GIL+ ++ +D R NHSATHLLH Sbjct: 512 TAADLEVEIHEVTKPVENLFVHRGKVVAGILKEHDTVTARVDPARRAATCRNHSATHLLH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS + P+ LRFD TH T EL+ +E+ VN ++ LPV Sbjct: 572 KALKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPEELQKVEELVNRMVLSALPVEAFET 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + +A GAAAL G KY +RVRVV + G S LCGGTH+ +T E+ L ++ ES Sbjct: 632 SLAEARKMGAAALFGEKYGERVRVVKM-----GDFSLELCGGTHLRNTAEVGLFKLLGES 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG+ A S++ ++E+L +A +K + V RVE + + R L+ + Sbjct: 687 SVGAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVKAAPHEAVRRVEGLLQTVRDLEAEN 746 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +L + ++ V ++ + D L+ ++D L+ ++ SG+I+L G Sbjct: 747 EALQARLARYQVQDLMDRLREVKGVKVLAGQAAAPDMDSLRGMVDLLRDRVGSGVIVL-G 805 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + E + +++ VT+DL+++ +A L + A V+GGGG GGRP MAQ+GG + ++ +A Sbjct: 806 SAGENRVNLVAAVTKDLVEKGLHAGKLVKELAPVVGGGG-GGRPEMAQAGGKDPSRLKEA 864 Query: 889 IAGVASFLK 897 + ++ Sbjct: 865 LEKTYKAVE 873 >gi|254450715|ref|ZP_05064152.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238] gi|198265121|gb|EDY89391.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238] Length = 884 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 427/893 (47%), Positives = 565/893 (63%), Gaps = 40/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++S IR+TFL+++ + GH ++ SS L+P NDPTLMFTNSGMV FKN FTG E YQ Sbjct: 1 MTSLSDIRSTFLDYYARQGHAVVASSPLVPRNDPTLMFTNSGMVQFKNRFTGVESGDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+F + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA+ LWKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKK-IGVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+R+IEIWN+VFMQ EQ + L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNVVFMQNEQFDDGTLKPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLF+ LI+AS T G+ V+HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 240 GHDNYETDLFRALIEASAHATSTDPFGDQNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG+AYPEL + LIE+TL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHILGSKDPVMHRLVPALVQQMGAAYPELGLGQTLIEDTLLNEEVRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L + + L+GD AFKLYDT G PLD+ QD L +G G+D F Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGDTAFKLYDTFGFPLDLTQDALREQGR-GVDTDGFK 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G+ IWF + +K G+T+F+GY+ Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIADKQGSTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV + V+ A G V ++F+QTPFY E+GGQ+GD G D Sbjct: 461 -----TETAQGQLLAIVSDTDPVDSASKGDCVALIFNQTPFYGESGGQVGDEGTVKTDTG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK G+F+H A V G + L +D R + NHSATHLL+ AL Sbjct: 516 TARITDT-KKVVGLFLHMAEVTSGTITKGQGSELVVDPARRAAIRANHSATHLLNEALRV 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD TH+ +TSAEL +E +VN + QN V TRIM +DA Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTGAMTSAELTQVEQDVNRYVQQNTAVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ +G +S LCGGTHV+ TG+I + + SE Sbjct: 635 RAIGAQALFGEKYGDEVRVVSMGRAKTGKGAEGLTYSLELCGGTHVARTGDIGMFALTSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + G+RRIEA+TGQ A ++L +DE L + LK +V RV+ + +E + L Sbjct: 695 RASSDGVRRIEALTGQTAMTYLRTRDETLGDVEGMLKAKGADVASRVKALMDERKALANE 754 Query: 774 HAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ + ++ + + I + F + ++ + K+L +++D ++ + SG I+L Sbjct: 755 VAQLRREVAMGGGAKDEGPQAKTINGIAFKAQVMQGITGKDLPAMIDEMKSVMGSGAILL 814 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + + KA+V VT DL+D+ +AVDL R + LGG GGGGRP MAQ GG Sbjct: 815 IA-DGDGKAAVAAGVTADLVDKVSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 866 >gi|152979781|ref|YP_001352273.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi|205830071|sp|A6SVH6|SYA_JANMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151279858|gb|ABR88268.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 869 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 364/910 (40%), Positives = 528/910 (58%), Gaps = 56/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N S IR FL+FF+ GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K Y Sbjct: 1 MNSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A++ +W+LLT+ + L Sbjct: 61 TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALKWSWELLTQVYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSE 174 +L TVY ED+EAF +W K GL +++IRI +DNFW MA+TGPCGPCSE Sbjct: 121 AEKLLATVYIEDDEAFDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 180 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG P E+G+R+IEIWN VFMQF+ LP +DTGMGLER+ Sbjct: 181 IFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVKPLPAPCVDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+ID F+ LI+A+ + T K NN + +VI DH+R+++FL+ADG++P+ Sbjct: 241 AAILQHVHSNYEIDTFEALIKAAGRETNTKDLSNN--SLKVIADHIRATAFLVADGVIPS 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV RRI+RRA+ + LG +P L+ L +MG AYP+L I + L++ Sbjct: 299 NEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLKADAQRITDVLKA 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +TL G+ +LD L+ G ++L G+VAFKL+DT G PLD+ D+ RGL+ + Sbjct: 359 EEERFFETLANGMEILDAALA--GDAKVLPGEVAFKLHDTFGFPLDLSADVCRERGLS-V 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+E+Q++ RA K+ +++ F GY+ L Sbjct: 416 DEAGFAAAMEKQKAAGRAAGKF-------KMERAVEYTGAGNTFTGYEHLE--------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V + +G V GQ VV D TPFY+E+GGQ+GD G Sbjct: 460 --------------EQATVVGLYFEGTAVPSLKEGQAGIVVLDTTPFYSESGGQVGDQGF 505 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G++ + D QK ++ HH + +G L + +D R NHS TH++ Sbjct: 506 ISAEGVQFGVEDTQKIKADVYGHHGVQTQGTLTVGDKVKAAVDGARRAATMRNHSVTHIM 565 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD RFD H+ P+T ++ IE VN I N R+ Sbjct: 566 HKALREVLGDHVQQKGSLVDPDKTRFDFAHNAPVTREQILEIEKRVNAEILLNSDTQARV 625 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L ++SE Sbjct: 626 MDIESAQKTGALMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVMSE 679 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG+RRIEAITG +A ++ + + S A+ +K + R+ ++ ++ + L+ Sbjct: 680 SGVAAGVRRIEAITGAKALGYVQDLEAVIHSAAAMMKTQPAELEPRLAQVLDQMKALERE 739 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + ++ ++ D L++ MD L+ K+++ I+L Sbjct: 740 VGALKGKLASSQGDELLAQAVDVKGIKVLAAVLEGADVATLRNTMDKLKDKLKTAAIVLA 799 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + + A DL A+ +GG G GG+P MAQ+GG + + A Sbjct: 800 AV-NDGKVSLIAGVTADSIAKVKAGDLVNFVAQQVGGKG-GGKPDMAQAGGTDASGLPTA 857 Query: 889 IAGVASFLKK 898 + GVA+++ + Sbjct: 858 LQGVAAWVGE 867 >gi|254460942|ref|ZP_05074358.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083] gi|206677531|gb|EDZ42018.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083] Length = 887 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 431/896 (48%), Positives = 576/896 (64%), Gaps = 41/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+K GH ++PSS L+P NDPTL+F NSGMV FKN+FTG E Y Sbjct: 1 MASLNDIRSTFLNYFEKQGHAIVPSSPLVPRNDPTLLFANSGMVQFKNLFTGLESRDYAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT EF++ Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKAEAIAYAWELLTVEFNI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY D+EA +WKK++GLS D+IIRI T+DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKERLLVTVYHTDDEAADIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFEDGTMKPLEMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 KHDNYDTDLMRSLIEASADATSVDPDGPTKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+A+PEL QA+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVRQMGAAFPELGQAQALIEETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L L + ++ +GD AFKLYDT G PLD+ QD L +G D+ FN Sbjct: 361 KTLERGLKLLDDELVGLPEGQVFSGDAAFKLYDTFGFPLDLTQDALREKGREA-DVDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+E Q+++ARA G G IWF + + +GAT F+GYD Sbjct: 420 QAMEAQKAKARAAWSGTGEAADSAIWFDIVDAHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + +V G + A +GQ+V+++ +Q+PFYAE+GGQ+GD G + Sbjct: 462 -----TETAEGQIATLVMDGAEADAAKAGQEVQIILNQSPFYAESGGQVGDKGIIKTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++D KK++G+ +H A V+ G + + +L +D+ R + NHSATHLLH AL Sbjct: 517 TAVVSDT-KKSQGVIIHTATVQDGEIIKGSAAILEVDHGRRTAIRANHSATHLLHEALRA 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +HS ++S +L +E +VN I QN PV TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSAALSSEDLIKVEKDVNTYIRQNAPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ +G +S LCGGTHV TG+I ++ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTQAGSGKGSNGQTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TG+ A H+ QD +L +AS LK +V RV+ + EE + L Sbjct: 696 DSASSAGVRRIEALTGEAALDHMRAQDLRLAKVASDLKAQAADVPARVKALLEERKALSN 755 Query: 773 IHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A+ + +L + + + +NF++ +++ V K+L +++D + I SG + Sbjct: 756 EVAQLRRELAMSGGAGQGGGAEAEVVNGINFVAQVLTGVSGKDLPALIDEHKAAIGSGAV 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +L+ + K A VT+D + +AVDL + + LGG GGGGR MAQ GG + Sbjct: 816 LLIADAGGKAAV-AAGVTDDTVATVSAVDLVKAAVVELGGKGGGGRADMAQGGGKD 870 >gi|86160202|ref|YP_466987.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C] gi|123496877|sp|Q2IG40|SYA_ANADE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|85776713|gb|ABC83550.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C] Length = 905 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 368/935 (39%), Positives = 533/935 (57%), Gaps = 76/935 (8%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR F +F+++GH + SSSL+P NDPTL+FTN+GMV FK++FTG+E+ Y Sbjct: 1 MKTPTAAEIRELFQRYFEEHGHRRVASSSLVPQNDPTLLFTNAGMVQFKDVFTGRERRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+L+T Sbjct: 61 SRATTAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKADAIAWAWELVTSPA 120 Query: 117 EFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RL TV+ DEEAF+LWK G+ ++I ++ DNFW+M +TGPCG Sbjct: 121 WLGIAKDRLAATVFAGEGTLPWDEEAFELWKAQ-GVPVERIHKLGAKDNFWAMGDTGPCG 179 Query: 171 PCSEIFFDQGECIPGGLPG-------SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 PCSE+ + QG +P + + +R++EIWNLVFMQFE+ LPK S Sbjct: 180 PCSELHYFQGNDVPCAEEQAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPS 239 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRS 281 IDTG GLER+A V Q K +NYD DLF+ +I A E ++ +Y+ + + RVI DH R+ Sbjct: 240 IDTGAGLERLAAVAQGKRSNYDTDLFRSIIHAVEGLSDKRYDAASDDGVSMRVIADHARA 299 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 ++FL+ DG+LP+NEGRGYVLRRIMRRA+ + + LG P + + A+ EMG+AYPE Sbjct: 300 TTFLVGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLERPFLAAVCGAVIDEMGAAYPETR 359 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------DEILNGD 385 + + IE+ + E+E F +TLD+GL +L+G + L I++G Sbjct: 360 ENRAFIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDATHDGKPATPAPDRARPIIDGK 419 Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445 VAF+LYDT G PLD+ + I RG +D F++ + EQR+R+ G G + + Sbjct: 420 VAFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQRARS--EWKGSGEQGVDDLH 476 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 + + G +F+GY+L + VKAI+ G V A Sbjct: 477 KQIAGELGEVKFLGYELP-----------------------AARAQVKAILANGARVARA 513 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 G KVE+V D TPFY E+GGQ+GD G G G+ +++ D Q+ G+ H V RG + Sbjct: 514 GKGDKVEIVTDATPFYGESGGQVGDVGHITGAGLEIRVDDAQRPVPGLVTHVGEVLRGEV 573 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 ++ L++D + R + NHSATHLL AL +LG HV Q GS + PD LRFD +H + Sbjct: 574 AVGDAVELSVDDRRRDLVRANHSATHLLQLALREVLGEHVKQAGSVVAPDYLRFDFSHFQ 633 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 P+T EL ++E VN+++ +N T ++ E+A +GA + G KY D VRVV + Sbjct: 634 PVTEEELAAVERRVNELVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP-- 691 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S LCGGTHV +G+I I SE SI +G+RR+ A TG RA + E+L+ Sbjct: 692 ----SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRA 747 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHI 800 A+ LK V ++E+ + L+ + + + + ++ Sbjct: 748 AALLKAGALEVSQKIEQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAAR 807 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 + D K L+ + D L+ ++ G++ L G ++ KA +L+ VT DL R A DL + +A Sbjct: 808 VEG-DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 K++ GG GGG+P MAQ+GG + ++A+ VA Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899 >gi|260574639|ref|ZP_05842642.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2] gi|259023056|gb|EEW26349.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2] Length = 882 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 429/891 (48%), Positives = 565/891 (63%), Gaps = 40/891 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFLEFFQ+NGH ++ SS L+P NDPTLMF NSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLEFFQRNGHRVVESSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT++FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPYAWELLTRDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WK+++GL +IIRI T+DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKDKLLVTVYHTDDEAANIWKRVAGLPDSRIIRIPTDDNFWRMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS ++G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 DKIWGGPPGSADQDGDRFIEIWNLVFMQNEQFADGRLVPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRALIEASAHATSTDPDGEGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG +PLM L+PAL +MG AYPEL +A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHQLGAQDPLMHRLVPALVRQMGGAYPELTRAQALIEETLQLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL LS + + L G+ AFKLYDT+G PLD+ QD L +G + +D F+ Sbjct: 361 QTLERGLHLLADELSRIPEGAALPGEAAFKLYDTYGFPLDLTQDALREQGRS-VDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G KIWF + E +G ++F+GYD Sbjct: 420 AAMAEQKAKARASWAGSGETGDAKIWFQIAEDFGPSEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G V+ A G +V++V +QTPFYAE+GGQ+GD G + Sbjct: 462 -----TETAEGQVLALVADGAAVQTA--GARVQIVVNQTPFYAESGGQVGDAGWIRTETG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 Q+TD +K A + A V G + L +D+ R + NHSATHLL+ AL Sbjct: 515 VAQVTDTKKAAGVVIHV-AEVTEGQISQGQPAKLEVDHSRRAAIRANHSATHLLNEALRR 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +T +EL +E VN +I QN PV TR+M +DA Sbjct: 574 ALGDHVAQRGSLNAADRLRFDFSHAKGMTPSELAQVEAEVNAVIRQNSPVETRLMTPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ DG +S LCGGTHV+ GEI I+S Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGALAGSGKGSDGQTYSLELCGGTHVARLGEIGSFLILS 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES+ +GIRRIEAITG+ + L++ A+ L ++ R++ + E + LQ Sbjct: 694 ESASASGIRRIEAITGEGVLRDVRANYAHLEAAAAALGAVPADLAPRIKALMAERKALQN 753 Query: 773 IHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ + ++ E I V F++ ++S V K+L ++D ++ ++ SG ++L+ Sbjct: 754 EVAQLRREVAMGGRAEGPEAKDINGVKFIAQVLSGVSGKDLPGLIDEMKARLGSGAVLLI 813 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 K +V VT DL+ R +AV L + +A+ +GG GGGGRP MAQ+GG Sbjct: 814 A-DTGGKPAVAAGVTGDLVARLSAVALVKAAAEAMGGKGGGGRPDMAQAGG 863 >gi|254292635|ref|YP_003058658.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814] gi|254041166|gb|ACT57961.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814] Length = 897 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 434/907 (47%), Positives = 584/907 (64%), Gaps = 37/907 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +V+ +R+ FLE+F NGHE++ S+ L+P D TL+F N+GMVPFKN+FTG E P + Sbjct: 15 SVNGVRSQFLEYFNSNGHEVVQSAPLVPQGGDSTLLFVNAGMVPFKNLFTGAETPAFLKA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+++TK F L Sbjct: 75 TSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIVHAWNVVTKVFGLP 134 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L +TV+ ED+EA LWKKI+GLS DKIIRI+T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 135 VDKLVVTVFSEDDEAAMLWKKIAGLSDDKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGP 194 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS E+G+R+IEIWNLVFMQF+Q R LPK SIDTGMGLER+A VLQ Sbjct: 195 DVWGGPPGSPEEDGDRFIEIWNLVFMQFDQSKDGSRVSLPKPSIDTGMGLERIAAVLQGV 254 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NNY+IDLF++LI A E V G+K + + RVI DHLRSS+FLIADG+ P+NEGRGYV Sbjct: 255 HNNYEIDLFQNLIAAEEDVYGLKQSEKTLGSLRVISDHLRSSAFLIADGVTPSNEGRGYV 314 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM + LLG EP M L+PAL EMG A+PEL +A+ I TL E+ RF + Sbjct: 315 LRRIMRRAMRHGHLLGSKEPQMHKLVPALVAEMGVAFPELGRAQASIVSTLEQEEGRFQR 374 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL RGL LL+ S +GK ++L G+ AFKLYDT G P+D+ QD+L A+G +D + F + Sbjct: 375 TLGRGLALLEDATSSMGKGDVLPGETAFKLYDTFGFPVDLTQDVLRAKG-IEVDEVGFEK 433 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A++ QR ++A G G K+WF ++ +GAT+FIGY Sbjct: 434 AMKVQRESSQASWQGAAEGDAVKVWFQTRDAHGATEFIGYSE------------------ 475 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI- 539 + +K I+ GE+ A GQK E+VFD+TPFY E+GGQ GD G G Sbjct: 476 -----EASEAELKTIIIDGELATTANEGQKAELVFDKTPFYGESGGQAGDRGEVRFAGGA 530 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK+A +F H + G ++ + +L +D R + NHSATH+LH AL Sbjct: 531 VFRVLDTQKRAGDVFSHIGEMVTGDIKAGVKALLEVDSVRRSNIRSNHSATHILHAALRN 590 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS + D LRFD HS ++ EL IE VN +I QN V T+ M + A Sbjct: 591 NLGDHVTQKGSLVEEDKLRFDFAHSGTLSQVELDKIEAEVNAVIRQNSEVSTKEMAPDAA 650 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ G +S LCGG HV TG+I + I SES + Sbjct: 651 IEAGAMALFGEKYGDSVRVLAMGEALEGGDKAYSVELCGGIHVRRTGDIAVFAITSESGV 710 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG A +L G+ +S+A LK + RV + ++ R L+ + Sbjct: 711 SAGVRRIEAVTGAAALEYLKGKVAIARSIADQLKSTIEKAPERVAALQDQKRALENELSD 770 Query: 777 RKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + + +I + ++ + V +K+L+ ++D +K++ SG+ + V + Sbjct: 771 AKKKLAMGASAGGAAAGPEEINGIKLLTRVADGVPAKDLRGLIDDAKKQLGSGVTVFVAV 830 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + KA+V VT+DL D+ +AVDL +++A +GG GGGGRP MAQ+GGP+G+KA+ A+ Sbjct: 831 -NDGKAAVATGVTDDLKDKISAVDLVKVAAAAVGGKGGGGRPDMAQAGGPDGSKANDAVD 889 Query: 891 GVASFLK 897 V +FLK Sbjct: 890 AVRAFLK 896 >gi|188996094|ref|YP_001930345.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|205830234|sp|B2V709|SYA_SULSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|188931161|gb|ACD65791.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 876 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 361/903 (39%), Positives = 533/903 (59%), Gaps = 41/903 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL++F+ GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+ Y+ Sbjct: 4 MTADEIRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QK R GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ ++ Sbjct: 64 ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLEIP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L ++V++ED+EAF++W K GL KI R+ DNFWSM +TGPCGP SEI++D+GE Sbjct: 124 KEKLLVSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G +E+ RY+EIWNLVFMQ+ + K LP SIDTGMGLER+A+VLQ Sbjct: 184 KF-GNPEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVD 242 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK +IQ +E+V+G +Y + + RVI DHLR+ +FLI+DG+LPANEGRGY Sbjct: 243 SNYDTDLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ Y + LG +P + + + +M +AYPELIQ + I+ +SE+E+F Sbjct: 303 VLRRIIRRALRYGKNLGIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFI 362 Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTL R + +L ++ L G+ FKLYDT+G P+D+M++IL G D+I Sbjct: 363 KTLKRSMDILYQMIEQARKENRRHLTGEETFKLYDTYGFPIDLMEEILKDEGFT-FDLIE 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ LEEQ+ RAR S + ++ +LK K QF+GY+ L Sbjct: 422 FHNLLEEQKERARKSW-KSQSKEIKPVYLTLKNKLPENQFVGYETLTSE----------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +S V AI++ ++V+ A G+ +E+V D TPFY E GGQ+GD G GD Sbjct: 470 -----------NSKVLAIIKGDQLVDTAKEGEDIEIVLDITPFYPEKGGQIGDRGIIEGD 518 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D Q +G+ VH V G ++ + D + R + +H+ATHLLH AL Sbjct: 519 EFLFEVLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKTDKERRENIMRHHTATHLLHAAL 578 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS ++ + LRFD TH + +T ELK++E+ VN I +N VV + M E Sbjct: 579 RNVLGDHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYE 638 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A+ SGA A+ KY D VRV+S S LCGGTHV TG+I I+SES++ Sbjct: 639 EALKSGAMAIFEEKYADVVRVISAG------ISKELCGGTHVKRTGDIGYFKILSESAVS 692 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G RRIEA+ G +A + + +K L+ L + ++ RV ++ + ++ + Sbjct: 693 SGTRRIEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENL 752 Query: 778 KLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + +L + E+L+ + + ++ EL+ + D L++K+ +I++ E Sbjct: 753 RKKLALSNINENLNIIEKEGFKVAYVSVENLNPNELREIADHLRQKLGKSVILVASKDAE 812 Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K K + ++ V+++L + + A D+ + A G GGGRP AQ G + +K Q Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASA-ANGSGGGRPDFAQGGINDTSKLSQLFEEF 871 Query: 893 ASF 895 Sbjct: 872 KKI 874 >gi|254436958|ref|ZP_05050452.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307] gi|198252404|gb|EDY76718.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307] Length = 884 Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 427/897 (47%), Positives = 565/897 (62%), Gaps = 40/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++S IR+TFL+++ +NGH+++ SS L+P NDPTLMFTN GMV FKN FTG E YQ Sbjct: 1 MTSLSDIRSTFLDYYARNGHKVVASSPLVPRNDPTLMFTNCGMVQFKNRFTGVESGNYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWNLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA+ LWKK G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKK-IGVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG P E+G+R+IEIWN+VFMQ EQ + +L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNIVFMQNEQFDDGTMKLLEMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DL + LI+AS T +G+ V+HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 240 HHDNYNTDLMRALIEASANATDGAPDGDGNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+ AL +MG+AYPEL Q + LIE+TL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPVMHRLVSALIQQMGAAYPELGQGQTLIEDTLLNEEIRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L + + L+G AFKLYDT G PLD+ QD L +G G+D F Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGATAFKLYDTFGFPLDLTQDALREKGR-GVDTDGFK 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G+ IWF + + +G T+F+GY+ Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIVDAHGVTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV + V A +G V ++F+QTPFY E+GGQ GD G D Sbjct: 461 -----TETAQGQLLAIVSDTDPVNSANTGDCVALIFNQTPFYGESGGQEGDQGTVKTDTG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD KK G+F+H A V G + T L +D+ R + NHSATHLL+ AL Sbjct: 516 TARVTDT-KKVAGLFLHMAEVTAGAITTGQGSELVVDHAQRSAIRANHSATHLLNEALRV 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD TH+ +T+ EL +E +VN + QN V TRIM +DA Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTSCMTAVELAQVEHDVNHYVQQNTTVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA A G KY D VRVVS+ D +S LCGGTHV+ TG+I + + SE Sbjct: 635 RALGAQAQFGEKYGDEVRVVSMGRANTGKGVDRQTYSLELCGGTHVARTGDIGMFALTSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + G+RRIEA+TGQ AR +L +DE L + LK +V RV+ + +E R L Sbjct: 695 RASSDGVRRIEALTGQTARRYLRTRDETLADVEGMLKSKGTDVATRVKALMDERRALANE 754 Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ + ++ + E I V F + ++ V K+L +++D ++ + SG ++L Sbjct: 755 VAQLRREVAMGGGAKDEGTQDKDINGVAFKAQVMQGVTGKDLPAMIDDMKSAMGSGAVLL 814 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + KA+V VT DL+D+ +AVDL R + LGG GGGGRP MAQ GG + + Sbjct: 815 IA-EGDGKAAVAAGVTADLVDKISAVDLVRAAVAKLGGKGGGGRPDMAQGGGKDASN 870 >gi|171058684|ref|YP_001791033.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6] gi|205830133|sp|B1Y1G9|SYA_LEPCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170776129|gb|ACB34268.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6] Length = 875 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 367/913 (40%), Positives = 523/913 (57%), Gaps = 56/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+TFL+FF+ GH+++ SS ++P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKASEIRSTFLKFFESKGHQIVGSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 61 TTSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTEHFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+++W K+ G+ A++I+RI N DNFW M +TGPCGPC+E Sbjct: 121 KDKLWVTVYSEDDEAYEIWNKVVGVPAERIVRIGDNKGARYMSDNFWMMGDTGPCGPCTE 180 Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IFFD G E+G+RYIEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 181 IFFDHGEGIPGGPPGSPDEDGDRYIEIWNNVFMQFNRTEDGVMHKLPKPSVDTGMGLERI 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGI 290 VLQ +NY+IDLF L+ A++ K + +VI DH+R+ SF I DG+ Sbjct: 241 TAVLQHVHSNYEIDLFVALLAAAKAAVESAGGKDVDPESPSLKVIADHIRACSFTIVDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI RRA+ + LG P ++ L +MG AYPEL A+ + E Sbjct: 301 IPGNEGRGYVLRRIARRAIRHGYKLGARTPFFHKIVAELVAQMGEAYPELRAAQARVTEV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L+ E+ERF +T+ G+ +L+ L+ G + ++G+ AFKL+DT+G P+D+ D+ RG+ Sbjct: 361 LKQEEERFFQTIQHGMEILEHALA--GGTKQVDGETAFKLHDTYGFPVDLTADVCRERGV 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+ A+E QRS+ARA + L T F GY+ L Sbjct: 419 T-VDQAGFDAAMEHQRSQARAAGKFKMAAG-------LAYSGAPTAFHGYEHLVCE---- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +S V AI G V+ A +G +V D TPFYAE+GGQ GD Sbjct: 467 ------------------TSKVVAIYVDGTPVDAAQAGDDAAIVLDHTPFYAESGGQAGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G R+ + D K +F HH + G ++ S V +D + R + NHSAT Sbjct: 509 SGELRNGSTRVVVADTFKIQADVFGHHGRIVEGSVKVGDSFVAKVDAELRAKTVRNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG+HV Q GS + + RFD H+ P++ A+++ +E VN I N Sbjct: 569 HLMHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVSDAQIRQVEAIVNAEILANAAAS 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 ++M +DA SGA L G KY + VRV+S+ S LCGGTHV +TG+I L + Sbjct: 629 AQVMALDDAQKSGAMMLFGEKYGETVRVLSIGS------SKELCGGTHVKATGDIGLFKV 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V+ES + AGIRRIEAITG A ++L + + +AS LK + V R+ + ++ R L Sbjct: 683 VAESGVAAGIRRIEAITGDNALAYLQSLESTVNGVASALKSAVPEVPARISGLQDQVRAL 742 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + A K +L I + ++ ++ D+ L++ MD L+ K+++ I Sbjct: 743 EKELAALKGKLASSQGDSLLAQTVDINGLKVLAVVLEGADAATLRTTMDQLKNKLKTAAI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + K + VT D + A +L A+ +GG G GG+P MA +GG + +K Sbjct: 803 VLAAVD-GGKVQLAAGVTADSTAKVKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDPSKL 860 Query: 886 DQAIAGVASFLKK 898 A+A V ++ + Sbjct: 861 AAALASVPGWVGE 873 >gi|319794254|ref|YP_004155894.1| alanyL-tRNA synthetase [Variovorax paradoxus EPS] gi|315596717|gb|ADU37783.1| alanyl-tRNA synthetase [Variovorax paradoxus EPS] Length = 874 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 376/909 (41%), Positives = 530/909 (58%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++PSSSL+P NDPTLMFTNSGMV FK++F G++K Y Sbjct: 7 TVADIRKTFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRNYVRAA 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK ++ A++LLTK + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY ED+EA+ +W K GL ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 127 EKLWATVYIEDDEAYDIWTKEIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD E G E+G+RYIEIWN VFMQF+ Q LP +DTGMGLER+A Sbjct: 187 FFDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG K GNN + RVI DH+R++SFL++DG++P+N Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNN--SLRVIADHIRATSFLVSDGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG +P L+P L MG AYP+L+ + I +TL++E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGDAYPKLVADEKRITDTLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G + L GDVAFKL+DT+G PLD+ D+ RG +D Sbjct: 365 EERFFETLANGMEILDAALA--GGAKTLPGDVAFKLHDTYGFPLDLSADVCRERG-VSVD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A+E+Q++ RA G K+ +++ F GY+ L Sbjct: 422 EAGFNVAMEKQKAAGRA-------GGKFKMDRNVEYTGAGNTFTGYEHLE---------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ V A+ +G V E GQ VV D TPFY+E+GGQ+GD G Sbjct: 465 -------------ESAKVVALYFEGAAVNELKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G++ + D QK +F HH +G L+ ++ +D R NHS THL+H Sbjct: 512 SAEGVQFGVEDTQKIKADVFGHHGTQTQGTLKVGDAVKAAVDGARRNATMRNHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + D RFD H+ P+T ++ IE VN I N+ R+M Sbjct: 572 KALREVLGDHVQQKGSLVDADKTRFDFAHNAPVTRDQILEIEKRVNAEILSNVATQARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L IVSE Sbjct: 632 DMESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVGRTGDIGLFKIVSEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG A ++L + ++S+A+ LK + GR+ ++ E+ R L+ Sbjct: 686 GVAAGVRRIEAVTGANALTYLQDLESTVQSVAATLKSPAAELQGRLSQVLEQVRALEREV 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L I + ++ + D+K L+ MD L+ K+++ II+L Sbjct: 746 GSLKGKLASSKGDELIAQAVDINGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAIIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT D + + A +L A+ +GG G GG+ MA +GG + A+ Sbjct: 806 VDGD-KVQIAAGVTADTVGKAKAGELVNFVAQQVGGKG-GGKADMAMAGGTDAAGVPAAL 863 Query: 890 AGVASFLKK 898 V ++ + Sbjct: 864 KSVQGWVSE 872 >gi|319763265|ref|YP_004127202.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC] gi|317117826|gb|ADV00315.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC] Length = 873 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 368/909 (40%), Positives = 520/909 (57%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 6 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +I W+LLT+ + L Sbjct: 66 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIHWGWELLTQVYKLPP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + T N + +VI DH+R+++FL+ADG++P N Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLAN--PSLKVIADHIRATAFLVADGVIPGN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E LR E Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LDG L+ G L GDVAFKL+DT+G PLD+ D+ RG G+D Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERG-VGVD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E Q+S ARA K+ +L+ A +F GY+ L G Sbjct: 421 EAGFAAAMEHQKSTARAAGKF-------KMDRALEYGGAANRFTGYEHLSG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + A+ G V +GQ VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------TAKIVALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQGLI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D QK ++ HH ++ G L ++ +D R NHS THL+H Sbjct: 511 TAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHLMH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + + RFD H+ P+T+ +++ IE VN I N R+M Sbjct: 571 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIECRVNAEILANTATDARVM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+E Sbjct: 631 DIESAQKTGAVMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVAEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG+ A ++L G + + A+ LK + R+ ++ + L+ Sbjct: 685 GVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEKEL 744 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L ++ + ++ + D+K+L+ MD L+ K+++ I+L Sbjct: 745 AQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVLAA 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT D R A +L A +GG G GG+P MA +GG + QA+ Sbjct: 805 VDGD-KVQLAAGVTADSTARVKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDAEALPQAL 862 Query: 890 AGVASFLKK 898 A VA+++ + Sbjct: 863 ASVAAWVGE 871 >gi|294505017|ref|YP_003569079.1| alanyl-tRNA synthetase [Yersinia pestis Z176003] gi|262363080|gb|ACY59801.1| alanyl-tRNA synthetase [Yersinia pestis D106004] gi|262367006|gb|ACY63563.1| alanyl-tRNA synthetase [Yersinia pestis D182038] gi|294355476|gb|ADE65817.1| alanyl-tRNA synthetase [Yersinia pestis Z176003] Length = 847 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 380/884 (42%), Positives = 536/884 (60%), Gaps = 56/884 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT + F+L + +L++TVY+ D+EA+ +W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVTVYETDDEAYNIWANEVG 120 Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERY 197 + ++IIRI N DNFW M +TGPCGPCSEIFFD G+ I GG PGS+ E+G+RY Sbjct: 121 VPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSAEEDGDRY 180 Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 IEIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI A Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIAAVA 240 Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 VTG + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 DVTGATD--LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 E L+ L MG A EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 KETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLKTEEEQFARTLERGLALLDDELSKLT 358 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 + L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR Sbjct: 359 -GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------ 410 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 S + SL A+QF GYD ++ + V A+ + Sbjct: 411 SSGFGADYNSLIRVDSASQFSGYDHVQQH-----------------------ATVTALFR 447 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 GE V+E +G++ VV ++TPFY E+GGQ+GD G +TD QK H Sbjct: 448 NGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKGELKNATATFSVTDTQKYG-QAIGHV 506 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 I+ G LR S+ +D R ++ +NHSATHLLH AL +LG HV+Q GS + L Sbjct: 507 GILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHLLHAALRNVLGEHVAQKGSLVNDKYL 566 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFD +H + + +++ +ED VN+ I +N+PV T +M + A GA AL G KY+D+VR Sbjct: 567 RFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 V+++ G S+ LCGGTH S TG+I L I++ES AGIRRIEA+TG+ A + L Sbjct: 627 VLTM-----GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIALLHQ 681 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792 Q + L+ +A +K N+ +V + + + L+ + K Q S I Sbjct: 682 QSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLIN 741 Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852 V + + V+ K L++++D L+ ++ S II+L + + K S+++ VT+DL + A Sbjct: 742 GVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTGKVKA 800 Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +L A+ + GG GGGRP MAQ+GG + A+A V +++ Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPAALASVEAWV 843 >gi|330825460|ref|YP_004388763.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601] gi|329310832|gb|AEB85247.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601] Length = 873 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 368/909 (40%), Positives = 521/909 (57%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 6 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +I+ W+LLT+ + L Sbjct: 66 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIRWGWELLTQVYKLPP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + T N + +VI DH+R+++FL+ADG++P N Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLAN--PSLKVIADHIRATAFLVADGVIPGN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E LR E Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LDG L+ G L GDVAFKL+DT+G PLD+ D+ RG G+D Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERG-VGVD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E Q+S ARA K+ +L+ A +F GY+ L G Sbjct: 421 EAGFAAAMEHQKSTARAAGKF-------KMDRALEYGGAANRFTGYEHLSG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + A+ G V +GQ VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------TAKIVALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQGLI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D QK ++ HH ++ G L ++ +D R NHS THL+H Sbjct: 511 TAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHLMH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + + RFD H+ P+T+ +++ IE VN I N R+M Sbjct: 571 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIERRVNAEILANTATDARVM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+E Sbjct: 631 DIESAQKTGAVMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVAEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG+ A ++L G + + A+ LK + R+ ++ + L+ Sbjct: 685 GVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEKEL 744 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L ++ + ++ + D+K+L+ MD L+ K+++ I+L Sbjct: 745 AQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVLAA 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT D R A +L A +GG G GG+P MA +GG + QA+ Sbjct: 805 VDGD-KVQLAAGVTADSTARVKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDAEALPQAL 862 Query: 890 AGVASFLKK 898 A VA+++ + Sbjct: 863 ASVAAWVGE 871 >gi|154248002|ref|YP_001418960.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2] gi|205830288|sp|A7IMR0|SYA_XANP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|154162087|gb|ABS69303.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2] Length = 884 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 444/894 (49%), Positives = 593/894 (66%), Gaps = 34/894 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR++F+++F K GHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSSFIDYFVKEGHEAVASSPLVPQNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+T+ F+L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTRTFEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + RL +TV+ EDEEA+ LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIFFD Sbjct: 121 PRDRLVVTVFSEDEEAYGLWKKIAGLSDDKIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G ++G+R+IEIWNLVFMQFEQ ER LP+ SIDTGMGLER++ VLQ Sbjct: 181 PNVPGGPPGSPDQDGDRFIEIWNLVFMQFEQLPGGERLALPRPSIDTGMGLERVSAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DL + LI ++T + +G +HRVI DHLR+S FL ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDLMRALIAEVAELTSVNPDGPQKASHRVIADHLRASVFLTADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM L+P L EMG AYPE+++A+ L EETL E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVPVLVREMGRAYPEIVRAESLAEETLLLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +L+ + L G+VAFKLYDT+G PLD+ QD L ARG +D +F+ Sbjct: 361 RTLERGLSILEEESTGLTSGGQFPGEVAFKLYDTYGFPLDLTQDALRARG-ISVDTTAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q++ ARA G G T+ +WFS++++ GAT+F+GY+ Sbjct: 420 AAMARQKAEARASWAGSGEAATDTLWFSVRDEVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G +V+ +G+K V+ +QTPFYAE+GGQ+GD G G+G Sbjct: 462 -----TEKAEGVVAALVRDGAVVDSLAAGEKGLVILNQTPFYAESGGQVGDIGRVSGEGG 516 Query: 540 RLQITDVQKKA-EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +K +FVH VE G L+ +LVL +D+ R + NHSATHLLH AL Sbjct: 517 VAAQVVATQKKLGDLFVHEVKVETGTLKRGTALVLEVDHARRAAVRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD +H KP++ EL +E N + +N PV TRIM +D Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPLSGGELAEVETIANRFVLRNEPVETRIMAVDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI SGA AL G KY D VRVVS+ +DG +S LCGGTHV TG+I L+ ++SES++ Sbjct: 637 AITSGARALFGEKYGDEVRVVSMGTDDGNGAPYSVELCGGTHVKRTGDIGLISVLSESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+T AR HL L A+ LK V RV + EE R+L+ A+ Sbjct: 697 ASGVRRIEALTADAARRHLNAASAALAGTAAVLKAPVAEVEARVATLVEERRRLERELAE 756 Query: 777 RKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L + + D+ ++ + ++ K+LK ++D +K+I SG++ +VG+ Sbjct: 757 ARKKLAMGGGGEASGDAVRTVGDIKLLARRVEGIEIKDLKGLVDEGKKQIGSGVVAIVGV 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + KA +++ VT DL+ RF+AV L R+ ++ LGG GGGGRP MAQ+GGP+G K Sbjct: 817 TSDGKAGIVVGVTADLIARFDAVALVRVGSEALGGKGGGGRPDMAQAGGPDGAK 870 >gi|51893138|ref|YP_075829.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] gi|59798515|sp|Q67MV8|SYA_SYMTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51856827|dbj|BAD40985.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] Length = 872 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 356/910 (39%), Positives = 520/910 (57%), Gaps = 59/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR F++FF+ GH +PSSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 1 MTSAEIRQKFIDFFKSKGHVHVPSSSLVPHNDPTLLFTNAGMNQFKDTFLGLEKREYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QKCVRAGGKHNDLD VG T RHHTFFEMLGNFSFG YFKE A+ AW+ +T + Sbjct: 61 VTAQKCVRAGGKHNDLDEVGFTARHHTFFEMLGNFSFGDYFKEDALAYAWEFITSPEWLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + RL++++Y +DE+AF +W G+ AD+I+R+ DNFW M +TGPCGPCSEIF+D Sbjct: 121 LPKDRLWVSIYKDDEQAFDVWHNKVGVPADRIVRLGEKDNFWRMGDTGPCGPCSEIFWDM 180 Query: 180 GECIPGGLPGSS----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G P +R+ E WN VFMQ+ Q + L + +DTG+GLERMAT Sbjct: 181 GPEYACDHPDGCRIDTCGCDRWREFWNNVFMQYNQTPEG-LVPLERTGVDTGLGLERMAT 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q +N+DIDL++ + +++G KY EG V RVI DH R +FLIADG+ + Sbjct: 240 IMQGVWSNWDIDLWQPIFARIHELSGKKYEGEGPEAVAFRVIADHARCCTFLIADGVRFS 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RRI+RRA+ + R+LG+ EP + + A+ MG AYPE+ + +I++ LR Sbjct: 300 NEGRGYVMRRILRRAVRFGRVLGFAEPFIWKVAGAVADVMGDAYPEVRERLPVIQDELRR 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL++G+ L+ +L+ + + + +++G AF LYDT+G PLDI++D+ +G Sbjct: 360 EEERFLRTLEQGMNRLEEILARMRQKGETVISGQDAFVLYDTYGFPLDIVRDVAREQGFT 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + A+ EQR+RARA + E T+F+GY L G Sbjct: 420 -VDEQGYQAAMAEQRARARAARDVSYITEVQSRIAGHLEGVAPTRFVGYTELAG------ 472 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ Q A G V +V D+TPFYAE GGQ+GDT Sbjct: 473 -----------------EGRVLAVFDQEGNATGAGEGSSVIIVLDRTPFYAEGGGQVGDT 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + G+R+++ D +K G +H+ V+ G L + +D + R+ NH+ATH Sbjct: 516 GQIVAPGLRVEVEDCRKLPSGHHLHYGTVQEGFLEVGQQVEARVDARKRKDTQKNHTATH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV Q GS + PD LRFD TH+ P+T ++ ++E+ +N I PV Sbjct: 576 LLHKALREVLGTHVQQAGSLVAPDRLRFDFTHTGPMTPEQIAAVEEMINAEIEAAEPVTW 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M ++A A GA AL G KY + VRVVSV S LCGG HVS+T E+ I+ Sbjct: 636 TEMPLDEARALGAMALFGEKYGEIVRVVSVGD----GWSRELCGGCHVSNTSEVQYFKIL 691 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I G+RRIEA+TG HL + E++ ++++ Sbjct: 692 SESGIGGGVRRIEAVTGPGVIRHLEEAQARAVEAQ--------------EQLRSRMKEME 737 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L ++ V ++ ++L+++ DA++ K+ SG+++ Sbjct: 738 KELEQLRAKLAASQTDSLVERAQEVGGVKVVAGTAPVATMEDLRNMTDAIRAKLGSGVVV 797 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ E K +++ VT+DL R +A +L R A++ GGGG GGRP MA +GG N + Sbjct: 798 LGAVTSEGKVNLVAAVTKDLAGRVHAGNLIREVARICGGGG-GGRPDMATAGGKNPERLG 856 Query: 887 QAIAGVASFL 896 +A+ V + Sbjct: 857 EALNAVPGLV 866 >gi|294677289|ref|YP_003577904.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003] gi|294476109|gb|ADE85497.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003] Length = 884 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 439/892 (49%), Positives = 571/892 (64%), Gaps = 41/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL FF+KNGH ++ SS L+P NDPTLMFTNSGMV FKN FTG EK Y Sbjct: 1 MPSLNDIRSTFLAFFEKNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEKAITYAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WKK+SGL+ ++IIRI T DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKSKLLVTVYHTDDEAAAIWKKVSGLTDERIIRIPTKDNFWQMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSKDEDGDRFIEIWNNVFMQNEQFEDGSMVELEMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSADPDGAGKVHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA +A +LG +P+M L+PAL +MG+AYPEL++A+ LIEETL+ E+ RF Sbjct: 301 VLRRILRRAARHAHMLGAKDPVMHKLVPALVRQMGAAYPELVRAQALIEETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL+RGL LLD L+ L + L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 VTLERGLKLLDDELAALPEGAELPGPAAFKLYDTYGFPLDLTQDALREKGRT-VDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQ+++ARA G G T K+WF + E+ G T+F+GYD Sbjct: 420 AAMEEQKAKARASWSGSGEATDAKLWFEIAERAGVTEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++A+V +G V EA V++V +QTPFYAE+GGQ+GD G D Sbjct: 462 -----TETAEGQIQALVIEGAEVTEATG--AVQIVVNQTPFYAESGGQVGDHGIIRTDSA 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ITD KK G+F+H V G + L +D+ R + NHSATHLLH AL Sbjct: 515 EIRITDT-KKVAGVFIHIGEVVEGKVTRGQPAKLEVDHARRSAIRANHSATHLLHEALRR 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H K +T+ EL ++E VN I QN PV TRIM +DA Sbjct: 574 ALGDHVAQKGSLNAEDRLRFDFSHGKAMTAEELMTVEAEVNAFIRQNTPVETRIMTPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ DG +S LCGGTHV TG+I + Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGELLGSGKGHDGRTYSLELCGGTHVKRTGDIGAFVALG 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES+ AG+RR EA+TGQ A L Q+ +L +A LK S V RV+ + EE + L Sbjct: 694 ESASSAGVRRFEALTGQAALDWLKAQNARLAEVAGLLKTSPAEVADRVKALAEERKALAN 753 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ + +L + +I + F++ ++S V K+L +++D L+ K+ SG +++ Sbjct: 754 EVAQLRRELAMGGGAAGGQEVIEIKGLRFIAQVVSGVSGKDLPALVDGLKDKVGSGAVLV 813 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 V KA+ VT D +AV++ +++A LGG GGGGRP MAQ+GG Sbjct: 814 VA-DTGGKAACAAGVTADKTGTVSAVEIVKIAAAALGGKGGGGRPDMAQAGG 864 >gi|238761735|ref|ZP_04622710.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] gi|238700249|gb|EEP92991.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] Length = 847 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 379/884 (42%), Positives = 535/884 (60%), Gaps = 56/884 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT + F+L + +L++TVY+ D+EA+++W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAISFAWELLTSAQWFNLPKEKLWVTVYETDDEAYEIWANDIG 120 Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERY 197 + ++IIRI N DNFW M +TGPCGPC+EIFFD G+ I GG PGS+ E+G+RY Sbjct: 121 IPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRY 180 Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 IEIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240 Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 +VTG + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 EVTGATD--LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 E L+ L T MGSA EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 KETFFYKLVAPLITVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 + L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR Sbjct: 359 -GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------ 410 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 S + SL A+QF GYD ++ + V A+ + Sbjct: 411 SSGFGADYNSLIRVDSASQFSGYDHVQQ-----------------------QATVTALFR 447 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 GE V+E G++ VV +QTPFY E+GGQ+GD G + D QK H Sbjct: 448 NGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVADTQKYG-QAIGHL 506 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 + G LR S+ +D R ++ +NHSATHLLH AL LG HV+Q GS + L Sbjct: 507 GQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYL 566 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFD +H + + +++ +ED VN+ I +N+PV T +M + A GA AL G KY+D+VR Sbjct: 567 RFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 V+++ G S+ LCGG H + TG+I L I+SES AGIRRIEA+TG+ A + L Sbjct: 627 VLTM-----GDFSTELCGGIHANRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQ 681 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792 Q + L +A +K N+ +V + + + L+ + K Q S I Sbjct: 682 QSDLLSDVAHLVKGDTNNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLIN 741 Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852 V + + V+ K L++++D L+ ++ S II+L + + K S+++ VT+DL + A Sbjct: 742 GVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTGKVKA 800 Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +L A+ + GG GGGRP MAQ+GG + A+A V +++ Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843 >gi|225023233|ref|ZP_03712425.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC 23834] gi|224944057|gb|EEG25266.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC 23834] Length = 873 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 361/913 (39%), Positives = 522/913 (57%), Gaps = 58/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + + +V+ DH+RS SFLIADG++ Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+ RF +TL+ G+ LL+ L+ L+G++ FKLYDT+G P D+ DI R Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D FN+ + A + K L T+F GY+ Sbjct: 417 NLDEDGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + A+ + E V+E G+ VV +QTPFYAE+GGQ+GD Sbjct: 460 -------------KRSQDTKIIALYKGSEAVDELQVGEAGVVVLEQTPFYAESGGQVGDV 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R ++ D QK + V G L+ ++ ID R + NHS TH Sbjct: 507 GFIFAGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDNIMRNHSVTH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + RFD++H + I + E+ +E VN I N+PV Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGINAEEIAEVERRVNAAIIANVPVKV 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ EDA SGA L G KY D VRV+++ G +S+ LCGGTHV+ TG+I I+ Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770 SE I AGIRR+EAITG A + Q+ +K++ + +K +V+ +++ + L Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKAL 741 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + AK K +L V + + ++ I + L+ ++ L K + +I Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + ++ Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQV 858 Query: 886 DQAIAGVASFLKK 898 + ++++ Sbjct: 859 GTMLDSAEGWVRE 871 >gi|239816150|ref|YP_002945060.1| alanyl-tRNA synthetase [Variovorax paradoxus S110] gi|239802727|gb|ACS19794.1| alanyl-tRNA synthetase [Variovorax paradoxus S110] Length = 874 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 368/909 (40%), Positives = 527/909 (57%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++ SSSL+P NDPTLMFTNSGMV FK++F G++K Y Sbjct: 7 TVADIRKTFLDFFASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRAA 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK ++ A++LLTK + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY ED+EA+ +W K GL ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 127 EKLWATVYIEDDEAYDIWTKDIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+RYIEIWN VFMQF+ Q LP +DTGMGLER+A Sbjct: 187 FYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG K GNN + +VI DH+R++SFL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNN--SLKVIADHIRATSFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG +P L+P L MG AYP+L+ + I ETL++E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGEAYPKLVADEKRITETLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G L G+VAFKL+DT+G PLD+ D+ RG +D Sbjct: 365 EERFFETLANGMEILDAALA--GDARTLPGEVAFKLHDTYGFPLDLSADVCRERG-VSVD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A+E+Q++ RA K+ +++ F GY+ L Sbjct: 422 EAGFNAAMEKQKAAGRAAGKF-------KMDRNVEYGGAGNVFTGYEHLE---------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ V A+ +G V++ GQ VV D TPFY+E+GGQ+GD G Sbjct: 465 -------------ENAKVVALYFEGAAVQQLKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +G++ + D QK +F HH +G L+ ++ +D R NHS THL+H Sbjct: 512 VAEGVQFGVDDTQKIKADVFGHHGTQTQGTLKVGDTVKAAVDTARRAATMRNHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + D RFD H+ +T ++ IE VN I N R+M Sbjct: 572 KALREVLGAHVQQKGSLVDADKTRFDFAHNAAVTHDQILEIEKRVNAEILANTETHARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L IVSE Sbjct: 632 DMESAQKTGAMMLFGEKYGESVRVLDIGS------SRELCGGTHVGRTGDIGLFKIVSEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG A +L + ++S+A+ LK + GR+ ++ E+ R L+ Sbjct: 686 GVAAGVRRIEAVTGANALGYLQELEATVQSVAATLKSPAAELQGRLVQVLEQVRALEREV 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L + + ++ + D+K L+ MD L+ K+++ +++L Sbjct: 746 GSLKGKLASSKGDELLAQAVDVNGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAVVVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K V VT D + + A +L A+ +GG G GG+ MA +GG + A+ Sbjct: 806 VD-GAKVQVAAGVTSDTVGKVKAGELVNFVAQQVGGKG-GGKADMAMAGGTDAAGLPAAL 863 Query: 890 AGVASFLKK 898 V +++ + Sbjct: 864 QSVQAWVAE 872 >gi|258592084|emb|CBE68389.1| alanyl-tRNA synthetase [NC10 bacterium 'Dutch sediment'] Length = 886 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 376/914 (41%), Positives = 528/914 (57%), Gaps = 47/914 (5%) Query: 1 MS---NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M IR FL FF++NGH ++ SSSL+P DPTL+FTN+GMVPFK +F G + Sbjct: 1 MMSRLTGGEIRERFLRFFERNGHTVVASSSLVPAGDPTLLFTNAGMVPFKGVFLGTDPRP 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 Y+ ++QKC+R GKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT E Sbjct: 61 YRRAVSIQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEGAIEYGWAFLTCE 120 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +L RL+ T+Y +D+ A +LW++++GL +D+I+R+ DNFWSM ETGPCGPCSE+ F Sbjct: 121 LELPADRLWATIYKDDDAAGELWQRLTGLPSDRIVRLGEKDNFWSMGETGPCGPCSELIF 180 Query: 178 DQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 DQG I G P +RY+E+WNLVFMQF + LPK SIDTG GLERMA Sbjct: 181 DQGPTIGCGRPTCTIECGCDRYLELWNLVFMQFNRDASGTLTPLPKPSIDTGAGLERMAA 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V Q T+N++ DL + LI E+++ +Y + + ++ RVI DH R+ +F +ADG+LP+ Sbjct: 241 VCQGVTSNFESDLIRPLIATVEELSQKRYGADEKDDISMRVIADHARAVTFALADGVLPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + RLLG EP + + M AYPEL ++ +E Sbjct: 301 NEGRGYVLRRILRRALRHGRLLGLDEPFLASTTHRVIDLMTDAYPELPASRAHVERLAWI 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E++RFG L L L ++ + IL G F+LYDT+G+P D++ +I + Sbjct: 361 EEDRFGIVLREALPRLHDLIEKIKSQTAEQAILPGSKLFELYDTYGVPRDLIDEIAVEQS 420 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 G D F L QR +RAH G F K T F+GY+ L Sbjct: 421 -VGCDWNGFEIELRHQRETSRAHLKAFGDVQGVAEAFHDLVKTRRTVFLGYERLD----- 474 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + V A++ G V+ GQ+ EVV DQTPFYAE+GGQ+G Sbjct: 475 ------------------LEASVVAVIVGGTQVDRMGVGQEGEVVLDQTPFYAESGGQVG 516 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G GDG+ ++ D ++ G+ VH V+RG R+ L+ +++ R NH+A Sbjct: 517 DAGYLRGDGVLAEVLDTKRPLAGLIVHRVRVKRGEFRSGQRLLASVEADRRSTTVKNHTA 576 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL ILG HV Q GS + PD LRFD H P++ AE+ IE+ VN + N+PV Sbjct: 577 THLVHAALRQILGDHVRQEGSLVAPDRLRFDFRHYGPVSPAEITQIEEMVNAKLWANVPV 636 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 V M ++A+A GA A G KY D VRVV V S LCGGTH STGEI LL Sbjct: 637 VVEEMRLDEALAKGALAFFGDKYGDEVRVVGVA-----DFSIELCGGTHTKSTGEIGLLK 691 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I E+ + AGIRRIEA+TG A +L + E L+ A LK V +VE +++ R Sbjct: 692 IAHETGVAAGIRRIEALTGPGAFQYLKREGEVLRESADRLKSKPLEVPEKVERLFDSARA 751 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + + + +L E +++ V ++ ++ + D + L+ ++D ++ KI+SG+ Sbjct: 752 FEREVQRLRAKLGAEMAEELLNKATRVSGVMVVAGLVEQCDQRALRELVDRVKTKIESGV 811 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L S + + + VT DL R +A L + A + GG GGGR +A++GG N ++ Sbjct: 812 IVLA-TSLDGRVGWVAAVTPDLTSRLHAGKLVKEVAN-ITGGSGGGRADLAEAGGKNLDE 869 Query: 885 ADQAIAGVASFLKK 898 D+A+ V +K+ Sbjct: 870 LDRALQLVPELVKQ 883 >gi|126735784|ref|ZP_01751529.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2] gi|126714971|gb|EBA11837.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2] Length = 885 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 433/892 (48%), Positives = 565/892 (63%), Gaps = 41/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MTSLADIRSTFLNYFGKQGHAIVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFAWELLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EA +WKK++GL D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ + L SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFDDGSLKPLEMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 241 KHDNYDTDLMRALIEASADATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG +P+M L+PAL +MG+AYPEL Q + LIEETL +E+ RF Sbjct: 301 VLRRIMRRAMRHAHQLGGKDPVMHRLVPALVQQMGAAYPELGQGQRLIEETLLNEEVRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L +L D L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 QTLDRGLKLLDEELQNLPDDAALPGTAAFKLYDTYGFPLDLTQDALREKGRE-VDTDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF++ ++ GAT F+GYD L Sbjct: 420 AAMAEQKAKARAAWSGTGEAADSAIWFNITDESGATDFLGYDTL---------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + A+V G+ + A V++V +QTPFYAEAGGQ+GD G + Sbjct: 464 -------TAEGQIMALVVDGDRADHA--DGAVQIVLNQTPFYAEAGGQVGDAGTLRTETG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +ITD +K E I VH A V G L L +D R + NHSATHLL+ AL Sbjct: 515 KAEITDTKKFGE-IHVHFAKVTEGHLHKGQGAELAVDPVRRANIQANHSATHLLNEALRA 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS PD LRFD +H+K + AEL I+ +VN II QN PV TRIM +DA Sbjct: 574 VLGDHIAQRGSLNGPDRLRFDFSHTKALNDAELAQIDRDVNAIIRQNSPVETRIMTPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ G +S LCGGTHV GEI + Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGRQEGSGKGMGGNTYSLELCGGTHVKQLGEIGAFVTLG 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TGQ A HL +++ L + A+ LK +V R++ + ++ Sbjct: 694 DSASSAGVRRIEALTGQAALDHLRDREKILFAAAAELKTPIDRLVSRIKGESFKLKEALN 753 Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +A+ + +L + I V F + ++S V K+L +++D ++ ++SG ++L Sbjct: 754 ENAQLRRELAMGGGAKDAAPSEVINGVAFQAQVLSGVTGKDLPALIDEMKAAMESGAVLL 813 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + KA+V + VT DL+DR +AVD+ R + LGG GGGGR MAQ GG Sbjct: 814 IA-DAGGKAAVAVGVTADLIDRVSAVDILRAATPELGGKGGGGRADMAQGGG 864 >gi|108763083|ref|YP_633939.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622] gi|122387764|sp|Q1D084|SYA_MYXXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108466963|gb|ABF92148.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622] Length = 898 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 373/920 (40%), Positives = 538/920 (58%), Gaps = 57/920 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF++ GH + SSSL+P NDPTLMFTN+GMV FK++FTG+E Y+ T Sbjct: 6 TASEIREAFLKFFEERGHRRVASSSLVPANDPTLMFTNAGMVQFKDVFTGRETRDYRRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI W+ +T+ L Sbjct: 66 TSQKCVRAGGKHNDLDNVGFTARHHTFFEMLGNFSFGDYFKADAIAYGWEFVTRTLGLST 125 Query: 123 RRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL +TV++ DEEA++LWKK G+ A+++ ++ DNFW+M +TGPCGPCSEI Sbjct: 126 DRLAVTVFNGEGGTPWDEEAYELWKKQ-GVPAERLYKLGLKDNFWAMGDTGPCGPCSEIH 184 Query: 177 FDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGM 228 + QG+ IP G + + +R++EIWNLVFMQFE+ + LPK SIDTG Sbjct: 185 YHQGDDIPCVEEAEGKKCQGVACDCDRWLEIWNLVFMQFERKEKDGPLIPLPKPSIDTGA 244 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A+V+Q K +NY+ DLF++++ ++ G Y + + RV+ DH R+++FLI+D Sbjct: 245 GLERIASVVQGKRSNYETDLFQNILATVSELCGKPYSQESGASQRVVADHSRAAAFLISD 304 Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G+ P+NEGRGYVLRRIMRRA+ + + LG + ++ + MG AYPEL +++ + Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGTQQLGLEDVFFFKVVDRVIELMGDAYPELRESRTFV 364 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E R E+ F +TL RGL L++ LS L K + L+GDV F L+ T+G P D+ Q I Sbjct: 365 LEVCRHEETSFRQTLSRGLKLIEEELSELQKAGGKQLSGDVVFLLHGTYGFPWDLTQIIA 424 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG +D+ + + G G T +++ L E+ G T+F+ Sbjct: 425 RERG---LDVDLVRFEERLKEEADKNKFAGSGDKATGEVYLKLAERLGTTEFL------- 474 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + ++AIV+ G V +A G VE+V D+TPFY E+G Sbjct: 475 --------------GYEGEGHEGEGSIRAIVKDGAEVTQATQGDTVELVLDRTPFYGESG 520 Query: 526 GQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GQ+GDTG +G G + ++TD Q+ G+ VH V G + + +D + R+ + Sbjct: 521 GQMGDTGRIVGHGGKAVAKVTDAQRPVPGLVVHSVEVSEGTFKVGDMVQAGVDSERRKSI 580 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG HV Q GS + PD LRFD H P TSA+L+ +ED VN I Sbjct: 581 RANHSATHLLHKALKLVLGEHVKQAGSVVAPDYLRFDFAHFSPATSAQLEQVEDLVNGWI 640 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N TR+M+ EDA SGA A+ G KY + VRVV+V S+ LCGGTHV +G Sbjct: 641 RDNAGAETRVMSLEDAKKSGAVAMFGEKYGETVRVVTVHP-----ESTELCGGTHVRRSG 695 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I L I SES + +G+RRI A+TG A H+ Q+ +L+ +A LK + V RVE Sbjct: 696 DIGLFKIASESGVASGVRRIVALTGIGALQHVREQEHELRKVAELLKSNPKEVSKRVEAT 755 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + ++L+ + ++ + + ++ + D L+ + D L+ Sbjct: 756 QKRVKELERKVEEVAVKAQTASSKDLLEQARDVNGMKVLATQVDAADDNVLRGMADQLRD 815 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +I+SG++ +G K+ +A +L+ T+D++ + NA L R AK +GG G GG+ MAQ+ Sbjct: 816 RIRSGVVA-IGGEKDGRAIILVAATKDVVAKGINAGALVREMAKEVGGKG-GGKAEMAQA 873 Query: 878 GGPNGNKADQAIAGVASFLK 897 GGP+ +K A+ + +K Sbjct: 874 GGPDASKLPAALEKLYELVK 893 >gi|160871945|ref|ZP_02062077.1| alanyl-tRNA synthetase [Rickettsiella grylli] gi|159120744|gb|EDP46082.1| alanyl-tRNA synthetase [Rickettsiella grylli] Length = 871 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 357/902 (39%), Positives = 527/902 (58%), Gaps = 45/902 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N +++R FL +F+K GH ++PS+SLIP +DP+L+FTN+GMVPFK++F G E+ Y Sbjct: 1 MNSNALRQLFLNYFKKQGHTIVPSASLIPAHDPSLLFTNAGMVPFKDVFLGLEQRSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI L+W +T+E L Sbjct: 61 ASVQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAILLSWKFMTEELGLS 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ITV+ ED+EA +W ++ + R DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PEKLWITVFTEDDEAANIWLNEVKINPKRFSRCGRQDNFWSMGDTGPCGPCSEIFYDYGP 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P S+ G+RY+EIWNLVFMQ+++ + LPK S+DTGMGLER+A V+Q Sbjct: 181 GISGGAPGTSTASGDRYVEIWNLVFMQYQRSFDGKHIALPKPSVDTGMGLERLAAVMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 TNN+D DLF LI+ + + + RVI DH+R+ +FLI+DG+ P NEGR YV Sbjct: 241 TNNFDTDLFLPLIKIVAKEASLTDFTTT--SLRVIADHIRACAFLISDGVYPGNEGRSYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + +G P L+ L +M AYP L++ + IE+ L E+++F + Sbjct: 299 LRRIIRRAVRHGHKIGLDRPFFYRLVRPLALQMQHAYPALVEKQKFIEKILLEEEQKFAR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL L + L L + G VAF+LYDT+G P+D+ D+ RGL ID+ F Sbjct: 359 TLTQGLKLFEQELDKLKDKKQFPGLVAFRLYDTYGFPVDLTADMARERGL-VIDMAGFTT 417 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++ Q+ +++ S + + AT+F+GY + Sbjct: 418 EMDAQKKKSKEASHFSTTPHVHSS------EKKATEFVGYKTREQADIP----------- 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + ++ ++ EE G++ VV +TPFYAE+GGQ+GDTG + R Sbjct: 461 -----------IIDLLDDKDLKEELAEGEEGFVVLTKTPFYAESGGQVGDTGYLVNATSR 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + KK + +H + +G L+ + +D + R ++NHSATHLLH L I Sbjct: 510 FFVITTLKKGS-LILHRGQLIKGHLKKGDKVKAEVDPKKRHATTLNHSATHLLHAVLREI 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+ V Q GS + P+ LRFD ++S P+T +LK IE+ VN I NLPVVT++M+ EDA Sbjct: 569 LGTQVMQKGSLVEPERLRFDFSYSSPLTCEQLKLIENRVNWQIRANLPVVTQVMSMEDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY + VRV+++ G S LCGGTHVS TG+I L I ESS+ G+ Sbjct: 629 KAGALALFGEKYGNNVRVLTI-----GTFSKELCGGTHVSQTGDIGLFKITEESSVSTGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL- 779 RRI+A+TGQ A + ++++ LA S+ V +V + + LQ A + Sbjct: 684 RRIQALTGQYALDWVAALEDQMNQLAKLFHTSKDTVFEKVCLEVKTKQSLQKKIAALQQS 743 Query: 780 --QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + E+L I +N + ++ +DS L+ ++D L+ K++ +I+L I + K Sbjct: 744 IVAMMGEELVSQALTIKGINLLISEMNGIDSAGLRFLVDQLKNKLKPAVIVLTSIEQ-KN 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ VT++L+ + A +LA A + GG GGGR AQ+GG + + V + Sbjct: 803 VQLVVGVTKELVGKIKANELAHSLA-LTMGGRGGGRADFAQAGGGKPEALEATLKSVKHW 861 Query: 896 LK 897 ++ Sbjct: 862 VE 863 >gi|119946985|ref|YP_944665.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37] gi|205830184|sp|A1T001|SYA_PSYIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119865589|gb|ABM05066.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37] Length = 867 Score = 852 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 369/887 (41%), Positives = 525/887 (59%), Gaps = 46/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR F +FF GH+ + + SL+P +DPTL+FTN+GM FK+ + G EK Y Sbjct: 3 KSTNEIRQGFRDFFVNKGHQSVSTGSLVPHDDPTLLFTNAGMNQFKDTYLGTEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E L Sbjct: 63 TSSQCCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEYLTVELGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++TV+DED EA K+W + G+ ++RI DNFWSM +TGPCGPCSEIF+D GE Sbjct: 123 KDKLWVTVFDEDLEAEKIWIEEIGVDPKCVLRIGAKDNFWSMGDTGPCGPCSEIFYDHGE 182 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PG++ E+G+R+IEIWN+VFMQ+ + LPK S+DTGMGLER++ ++Q Sbjct: 183 DVWGGPPGTAEEDGDRFIEIWNIVFMQYNRHADGTMENLPKPSVDTGMGLERISAIMQNC 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI+ +VTG + RV+ DH+RS FLI DG++P+NEGRGYV Sbjct: 243 HSNYEIDLFQGLIKKVAEVTGASD--LEDKSLRVVADHIRSCGFLICDGVMPSNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + + L +MG AYPEL + +L +E+ LR E+E+F K Sbjct: 301 LRRIIRRAVRHGHKLGAKDIFFFKIYDELINQMGDAYPELSKQRLFVEKILRREEEQFAK 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLDRGL +LD L HL +++ GDV FKLYDT G P D+ DI RGL ID F++ Sbjct: 361 TLDRGLQILDNELDHLE-GQVIPGDVVFKLYDTFGFPADLTADIARERGLT-IDEAGFDK 418 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ EQR RA+ + + T+FIGY+ L+G+ Sbjct: 419 AMAEQRKRAQQANNFGI------DYNKTLIIDQKTEFIGYETLQGA-------------- 458 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + V +V +G V G +V+ TPFYAEAGGQ GD G I + Sbjct: 459 ---------ATVTHLVVEGAFVNALKEGDSGQVILSATPFYAEAGGQSGDAGKLILNNGV 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +TD +K + FVH V G ++ + +D R+ ++++HSATHLLH AL Sbjct: 510 FVVTDTKKSGD-AFVHSGYVGMGSVKVNDKVHAEVDTARRQSIALHHSATHLLHAALRKT 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + D LRFD +H + +++ L + VN+ I N VVT++M+ E+A Sbjct: 569 LGEHVTQKGSLVDADKLRFDFSHFEALSADSLSEVTFLVNEAIRNNYEVVTKLMDIEEAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +S A AL G KY++ VRVV + G S+ LCGGTH TG++ L I SES I AG+ Sbjct: 629 SSNAMALFGEKYDEMVRVVQM-----GDFSTELCGGTHAKRTGDLGLFLIRSESGIAAGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA G A + ++ ++ N+ ++E++ + + L+ A+ K + Sbjct: 684 RRIEATVGSAADQVISELLYEVDKACGLVRGDHVNLGEKIEQLVDRSKLLEKEVAELKAK 743 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + + +I V + I +D K L+ +D ++ K+QSGI++L ++ + K Sbjct: 744 IASAAGANLIDNAIEINGVKVVIANIEGIDPKLLRDSVDQMKNKMQSGIVVLATVAADDK 803 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 S++ V++DL+ + A +L L A +GG G GGRP MA +GG N Sbjct: 804 VSLIAGVSKDLIKKVKAGELVNLVAGPVGGKG-GGRPDMAMAGGNNP 849 >gi|225848695|ref|YP_002728858.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644297|gb|ACN99347.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] Length = 875 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 362/904 (40%), Positives = 538/904 (59%), Gaps = 41/904 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL++F+ GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+ Y+ Sbjct: 4 MAADEIRESFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QK R GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ WD LT + Sbjct: 64 ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFTWDYLTNYLKIP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 Q +L ++V++ED+EAF++W K+ GL +KI R+ DNFWSM +TGPCGP SEI++D+GE Sbjct: 124 QEKLLVSVFEEDDEAFEIWNKVIGLPEEKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G S+E RY+EIWNLVFMQ+ + LP SIDTGMGLER+A+V+Q+ Sbjct: 184 KF-GNPEFGSDEDFRYLEIWNLVFMQYNRDESGNLTPLPNPSIDTGMGLERIASVIQQVD 242 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK +I+ +E++ G Y + V RVI DHLR+ +FLI+DG+LP+NEGRGY Sbjct: 243 SNYDTDLFKPIIRFAEEIAGKTYGKNEKDDVAMRVIADHLRAITFLISDGVLPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ Y R LG P + + + +M +AYPEL+ + I++ +SE+E+F Sbjct: 303 VLRRILRRALRYGRNLGIDRPFLYEGVDVVIDKMKNAYPELVPNRNYIKKITKSEEEKFI 362 Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTL R + +L ++ + + L G+ FKLYDT+G P+D++QDIL + +I Sbjct: 363 KTLRRSMDILYQMIETAKKEGRKFLTGEEVFKLYDTYGFPIDLLQDILRDESMT-FNIKE 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + + EQ+ R+R + + I+ LK + +FIGY+ L Sbjct: 422 FEELILEQKERSRKAFKT-TAKQVKPIYLQLKSRLPENEFIGYNTLISE----------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 SS V AIV++ + V +A G++VE++ D TPFY E GGQ+GD G G+ Sbjct: 470 -----------SSKVLAIVKEDQTVSQAKEGEEVEIILDITPFYPEKGGQVGDRGVIEGE 518 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D Q EG+ +H + G ++ + +D + R + +H+ATHLLH AL Sbjct: 519 NFLAEVIDTQTPTEGLILHKVKILFGTVKEGEFVRAKVDKERRENIMRHHTATHLLHSAL 578 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ILG HV Q GS ++ + LRFD TH + ++ E+K IE+ VN I +N VV + M+ E Sbjct: 579 RNILGDHVKQAGSLVSDEYLRFDFTHFESLSDEEIKMIEEFVNREIMKNEEVVCQEMSYE 638 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A+ SGA A+ KY D VRV+S S LCGGTHV TG+I I+SE ++ Sbjct: 639 EALNSGAIAIFEEKYGDVVRVISAG------VSKELCGGTHVKRTGDIGYFKILSEYAVS 692 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G RRIEA+ G RA + + LK L+ L V + ++ RV ++ + ++ + Sbjct: 693 SGTRRIEAVAGIRAVEQGLKEHFLLKDLSRLLTVKEDELIDRVVKLQNQLKEKERELENL 752 Query: 778 KLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K + ++ L+ + D I V EL+ + D +++K+ +++LV KE Sbjct: 753 KKKAALDKLNQTLNIIEKEDYKVAYGEIENVSPNELREIADNIKQKLGKAVVLLVSKDKE 812 Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K K +++ +V++DL DR+ A ++ + A ++ G GGG+P AQ GG N K Q + Sbjct: 813 KSKVNIVALVSKDLTDRYKASEILKKLAPIVE-GSGGGKPDFAQGGGTNLEKVPQLLQEF 871 Query: 893 ASFL 896 +F+ Sbjct: 872 KNFI 875 >gi|319786629|ref|YP_004146104.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317465141|gb|ADV26873.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 882 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 391/909 (43%), Positives = 543/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTARIRSDFLEFFKDKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIAWAWELLTGVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ +W+ G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDEAYGIWRDQIGVPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGEHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+ + +TG + RVI DH+R+SSFLI DG+LP+N Sbjct: 248 AILQHVHSNYEIDLFQALIRKAAALTGTPD--LENKSLRVIADHIRASSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+ L +MG AYPEL A+ ++ L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFHQLVDELVAQMGEAYPELPAARDTVQRALKAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V +H ++ G AF+LYDT+G PLD+ QDI RGL +D Sbjct: 366 EERFAETLDAGMKIFEDVAAHAA-GAVIPGVDAFRLYDTYGFPLDLTQDIARERGLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E+QR ARA G ++ L T F+GYD L Sbjct: 424 VAGFEAAMEQQRETARAAGKF---GGGVQLPAELVATLEPTVFLGYDALEAEGM------ 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G V+ SG++ V+ D+TPFYAE+GGQ+GDTG Sbjct: 475 ----------------KVVALLHDGRPVDSVASGEEAIVLLDRTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G +LQ+ D QK A H V G L+T L +D + RR + +NHSATHLLH Sbjct: 519 EGEGAKLQVGDTQKFAGQFHGHFVRVAEGGLKTGQLLRGAVDGERRRAIVLNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +P+ + E+ IE VND + N VV + M Sbjct: 579 GALRGLLGTHVQQKGSLVAPDRLRFDFSHFQPVNAEEVARIERMVNDEVRANHAVVIQQM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRVV + S LCGGTHV+ TG+I L IVSE Sbjct: 639 GIQEALDLGAMALFGEKYGERVRVVKMGE------SVELCGGTHVARTGDIGLFKIVSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A H+ + L AS L S+G VV R + E RKL+ Sbjct: 693 GVSAGVRRIEALTGQAALEHIAAEGRALDEAASLLGGSRGEVVERARAVAERIRKLEREL 752 Query: 775 AKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K + + ++ + ++ + +D+K L+ +D L++++ +++L G Sbjct: 753 ESIKAKAASSAAADLAGSAVDVSGIKVLAARLEGIDAKGLREAVDRLKQQLGDTVVLLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K +++ V + A +L A +GG G GGRP +AQ GG +G A+ Sbjct: 813 A-QGGKVALVAGVNGAATGKVKAGELLAHVAGRIGGKG-GGRPDLAQGGGEDGPALAPAL 870 Query: 890 AGVASFLKK 898 A V +++ + Sbjct: 871 ADVPAWVAE 879 >gi|134298636|ref|YP_001112132.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1] gi|205830077|sp|A4J2K4|SYA_DESRM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134051336|gb|ABO49307.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1] Length = 878 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 364/910 (40%), Positives = 547/910 (60%), Gaps = 49/910 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +L FF++ GH++LPS+SLIP NDP++++T +GMVPFK FTGQ P YQ Sbjct: 1 MLTGKEIREKYLRFFEQRGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R D+++VGRT RHHTFFEMLGNFSFG YFKE I AW+ +TKE +L Sbjct: 61 VTTCQKCIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKESIIPWAWEFITKELNL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L+IT+Y +D+EAF++W K+ G+ +++I+R+ + NFW + GPCGPCSEI+ D G Sbjct: 117 PKEKLWITIYQDDDEAFEIWNKVVGIPSERIVRLGKDTNFWEIG-VGPCGPCSEIYVDLG 175 Query: 181 ECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G + +R++EIWNLVF+QF + + L IDTGMGLER+A+VLQ Sbjct: 176 EARGCGSPECQVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLENKGIDTGMGLERVASVLQ 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D D+F+ ++ + + G +Y + + +VI DH R+ +F ++DG LP NEG Sbjct: 236 GVASNFDTDIFREIMDFTANLAGQEYGQKADIDLALKVIADHCRAVTFAVSDGALPGNEG 295 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYV+RR++RRA+ + R+LG EP + + A+ +M AYPEL Q + +R+E+E Sbjct: 296 RGYVIRRLLRRAVRFGRVLGVREPFLYKVAQAVIKQMQDAYPELKQKAEHVLRVIRTEEE 355 Query: 357 RFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL G +L ++ + + GD AFKLYDT G PL++ Q+I +GL +D Sbjct: 356 RFLETLAAGSDILSALINEAKASGASEITGDDAFKLYDTFGFPLELTQEIAEEQGL-AVD 414 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + FN A+EEQR RAR+ + + + +L+E+ G T+FIGY L Sbjct: 415 VEVFNAAMEEQRKRARSARQETEYLSERGVLYKALREELGETRFIGYSALEAD------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + A+++ G AV+G++VE+V D TP YAE+GGQ+ D Sbjct: 468 ----------------SNIMALLKDGMQEISAVAGEEVEIVLDVTPCYAESGGQVADHAI 511 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G + ++IT V K EG+ +H V GI++ S+ +D R+ + NHSATHLL Sbjct: 512 LRGPDLEVEITSVNKPVEGLVIHRGKVLSGIIKRHDSVKAIVDQPRRQDTARNHSATHLL 571 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + PD LRFD TH +TS EL+ IE+ VN+ + NL + Sbjct: 572 HKALKEVLGDHVNQAGSLVEPDRLRFDFTHYAAVTSEELRRIEEIVNEAVLSNLSIEVFE 631 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + A GAAAL G KY +VRVV + G S LCGGTH++ST E+ L I +E Sbjct: 632 TSLSKAKEMGAAALFGEKYGKQVRVVKM-----GDFSMELCGGTHLTSTAEVGLFKIFNE 686 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +S+ AG+RRIEA+TG +L ++E+L+ +AS +K +V R E + ++ + L+ Sbjct: 687 TSVGAGLRRIEAVTGTGVLKYLKAKEEQLEEIASVIKSPMHELVRRSEALVQQNKSLEQE 746 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +L ++ + + +V ++ +++ D L+ ++D L+ K+ SG+I+L Sbjct: 747 IEALRNKLAKSEVQDILGNIKRAKEVPVLASVVAAPDMDNLRGMVDMLRDKMGSGVILLG 806 Query: 829 GISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + E K +++ VT+DL +A +L + AK++GGGG GGRP MAQ+GG N K + Sbjct: 807 STAGE-KVNLVAAVTKDLHGQGLHAGNLVKEIAKMVGGGG-GGRPDMAQAGGKNPEKLQE 864 Query: 888 AIAGVASFLK 897 AI V ++ Sbjct: 865 AIDQVCRVVE 874 >gi|121605522|ref|YP_982851.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] gi|205830175|sp|A1VQK2|SYA_POLNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120594491|gb|ABM37930.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] Length = 874 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 367/907 (40%), Positives = 523/907 (57%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 TVADIRKTFLDFFAAKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGVDKRPYVRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY+ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYEEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ IPGG P E+G+R+IEIWN VFMQF LP +DTGMGLER+A Sbjct: 187 FYDHGDHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAEDGSVTPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG G+ + RVI DH+R+++FL++DG+ P+N Sbjct: 247 AILQHVHSNYEIDIFDALIKAASRETGEADLGHK--SLRVIADHIRATAFLVSDGVNPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LLG P L+ L MG AYP L I E L++E Sbjct: 305 EGRGYVQRRIIRRAIRHGYLLGKKTPFFHKLVADLAGLMGDAYPRLAADAQRITEVLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL+ G+ +LD L+ ++L G+VAFKL+DT+G PLD+ D+ RGL+ +D Sbjct: 365 EERFFETLETGMQILDAALAD--GVKVLPGEVAFKLHDTYGFPLDLSADVCRERGLS-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ +Q+++ARA K+ +L F GY+ L Sbjct: 422 EAGFTVAMNQQKAQARAAGKF-------KMDRALDYSGTGNVFTGYEHLE---------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +S + AI G +GQ +V D TPFYAE+GGQ GD G Sbjct: 465 -------------ETSKIIAIYADGVSAAALKAGQNGVIVLDTTPFYAESGGQAGDEGEL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I R ++D K ++ HH + G L + ++ + R NHSATHL+H Sbjct: 512 ISGSARFAVSDTLKIKADVYGHHGTLAEGTLNVGDHVSARVNKEVRAATVRNHSATHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + + RFD H+ P+T A+++ +E VN I N M Sbjct: 572 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPMTDAQIREVEARVNAEILANSATDASEM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY D VRV+S+ S LCGGTHV TG+I L IV+ES Sbjct: 632 DMEAAQKTGAMMLFGEKYGDSVRVLSIGS------SKELCGGTHVGRTGDIGLFKIVAES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RR+EA+TGQ A ++L + ++S A LK S + R+ ++ ++ + L+ Sbjct: 686 GVASGVRRVEAVTGQNALAYLQSLESTVQSAAGTLKASPSELQNRIGQVLDQVKALEKEV 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L L + + ++ + D+K L+ MD L+ K+++ +I+L Sbjct: 746 AALKGKLASSQGDELMLQAVDVKGLKVLAARLEGADAKTLRETMDKLKDKLKTAVIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + VT D + A +L A +GG G GG+ MA +GG + + + A+ Sbjct: 806 VD-GSKVQIAAGVTSDSTGKVKAGELVNFVAGQVGGKG-GGKADMAMAGGTDASNLNAAL 863 Query: 890 AGVASFL 896 V ++ Sbjct: 864 DSVLGWV 870 >gi|15836729|ref|NP_297417.1| alanyl-tRNA synthetase [Xylella fastidiosa 9a5c] gi|9104908|gb|AAF82937.1|AE003866_2 alanyl-tRNA synthetase [Xylella fastidiosa 9a5c] Length = 916 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 368/910 (40%), Positives = 543/910 (59%), Gaps = 50/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V Sbjct: 40 TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 99 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT ++L Sbjct: 100 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 159 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EI Sbjct: 160 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 219 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE IPGG P E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A Sbjct: 220 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 279 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + ++T + N + RVI DH R+ +FLI DG+LP+N Sbjct: 280 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLRVIADHSRACAFLIVDGVLPSN 337 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E Sbjct: 338 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 397 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG++ +D Sbjct: 398 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 455 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 ++ F A+ +QR ARA G ++ T F+GY+ L+ Sbjct: 456 MVGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGL------ 506 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 507 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 550 Query: 535 IGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +K G F H + +G ++ L ++ R+ +++NHSATHLL Sbjct: 551 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 610 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++ G+HV Q GS + PD LRFD +H +PI +A++ IE VND + N V+ Sbjct: 611 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 670 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A+ +GA AL G KY + VRVV++ S LCGGTH++ TG+I L I+SE Sbjct: 671 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHINRTGDIGLFKIISE 724 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG+ A +H++ ++ +L +A + + +VV + ++ + + L+ Sbjct: 725 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 784 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K +L + + +ADV ++ + +D K L+ +D L+ ++ +I+L Sbjct: 785 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 844 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ K A V V + + A L A + G GGGR AQ GG +G A Sbjct: 845 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 903 Query: 889 IAGVASFLKK 898 + GVA+++K+ Sbjct: 904 LDGVATWVKQ 913 >gi|253574903|ref|ZP_04852243.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845949|gb|EES73957.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 874 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 364/910 (40%), Positives = 521/910 (57%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +LEFF GH++ PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 1 MKASEIRSKWLEFFASKGHKIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRIKPENPRL 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTDKKWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RL +TVY EDEEAFKLW + G+ AD+II++ DNFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPDRLSVTVYPEDEEAFKLWNEKIGIPADRIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173 Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 GE E ER++E+WNLVF QF LP +IDTG GLER A++ Sbjct: 174 GEAYGDLSDPECYPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPAN 294 LQ+ +N+D DLF+ +IQ + + G+ Y +VI DH+R+ +F +ADG+LP+N Sbjct: 234 LQDVNSNFDTDLFQPIIQKTASLAGVTYGAAEDSDVALKVIADHIRTVTFAVADGVLPSN 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV+RR++RRA+ Y +L+G +P M L+ + MG+ YP+++ + IE+ +R+E Sbjct: 294 EGRGYVIRRLLRRAVRYGKLIGLDKPFMFSLVETVGDIMGTYYPDVVIKREFIEKVIRTE 353 Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL GL +L + + ++GD AFKLYDT+G PLD+ +D GL+ Sbjct: 354 EERFHETLSDGLAILADISAEAKAQGRTQISGDDAFKLYDTYGFPLDLTEDFAAEHGLS- 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RARA GS + L + T+F+GY+ L Sbjct: 413 VDREGFEAAMEEQRERARAARHESGSMMVQGGV--LADFTTKTEFVGYNELE-------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V++ + AIV V+ GQ +V+ TPFYAE+GGQ+ D G Sbjct: 463 ---------------VTTSIVAIVVDDAFVDTLGEGQSGQVILASTPFYAESGGQVSDQG 507 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + + K G VH V+ G LR + ++D + R NH+ATHL Sbjct: 508 TIHNDSASATVEGLFKAPHGQHVHQVTVKTGELRVGAEVTASVDREQRSHTVKNHTATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + P LRFD +H I+ EL IE VN+ I LPV T Sbjct: 568 LHKALKETLGEHVNQAGSLVEPQRLRFDFSHLGSISPEELAEIERRVNEQIWNALPVTTS 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + ++A A GA AL G KY D VRVV V G +S LCGG HV+++ EI L IVS Sbjct: 628 LKPIDEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVNNSAEIGLFKIVS 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +G+RRIEA+TG+ A + GQ + LK A LK + +V RVE ++++ ++L Sbjct: 683 ESGIGSGVRRIEAVTGRGAYLFMDGQLDLLKQAAGLLKANVNDVPKRVEGLFQQLKELSR 742 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L+V + + ++ + L+++ D L+ K+ +++L Sbjct: 743 ENESLQSKLSVIEAGELTSQVVSVGQTKLLAARVQAGSMDALRTLADELKVKLPDAVLVL 802 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E K + ++VV ++ + R +A L + A V GGGG GGRP MAQ+GG + +K D Sbjct: 803 -GAPNEDKVNFVVVVPKEEVARGLHAGKLVKEIAAVCGGGG-GGRPDMAQAGGKDASKLD 860 Query: 887 QAIAGVASFL 896 +A+ A ++ Sbjct: 861 EALKVAAEWI 870 >gi|22096207|sp|Q9PH22|SYA_XYLFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 884 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 368/910 (40%), Positives = 543/910 (59%), Gaps = 50/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V Sbjct: 8 TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT ++L Sbjct: 68 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE IPGG P E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A Sbjct: 188 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + ++T + N + RVI DH R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLRVIADHSRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG++ +D Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 ++ F A+ +QR ARA G ++ T F+GY+ L+ Sbjct: 424 MVGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGL------ 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 475 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +K G F H + +G ++ L ++ R+ +++NHSATHLL Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++ G+HV Q GS + PD LRFD +H +PI +A++ IE VND + N V+ Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 638 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A+ +GA AL G KY + VRVV++ S LCGGTH++ TG+I L I+SE Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHINRTGDIGLFKIISE 692 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG+ A +H++ ++ +L +A + + +VV + ++ + + L+ Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K +L + + +ADV ++ + +D K L+ +D L+ ++ +I+L Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ K A V V + + A L A + G GGGR AQ GG +G A Sbjct: 813 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871 Query: 889 IAGVASFLKK 898 + GVA+++K+ Sbjct: 872 LDGVATWVKQ 881 >gi|270264045|ref|ZP_06192313.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13] gi|270042238|gb|EFA15334.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13] Length = 839 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 374/875 (42%), Positives = 535/875 (61%), Gaps = 56/875 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 +FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 2 LFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 61 Query: 97 SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AI AW+LLT F+L + RL++TVY+ D+EAF +W+K G+ A++IIRI Sbjct: 62 SFGDYFKHDAISYAWELLTGENWFNLPKERLWVTVYETDDEAFDIWQKQIGVPAERIIRI 121 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFM Sbjct: 122 GDNKGAAFASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFM 181 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF LI A +VTG Sbjct: 182 QFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFSKLITAVAKVTGA--VD 239 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 + + RVI DH+RS +FL++DG++P++EGRGYVLRRI+RRA+ + +LG E L+ Sbjct: 240 LDNKSLRVIADHIRSCAFLVSDGVMPSSEGRGYVLRRIIRRAIRHGNMLGAKESFFYKLV 299 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MG A EL + + L+E+ L++E+++F +TL+RGL LLD L++L + L+G+ Sbjct: 300 APLIEVMGPAADELKRQQSLVEKVLKTEEDQFARTLERGLALLDEELANLQ-GDTLDGEA 358 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ RGL +D F QA+E QR RAR S + Sbjct: 359 AFRLYDTYGFPVDLTADVCRERGLK-VDEAGFEQAMEAQRRRARE------SSGFGADYN 411 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 S+ GA+QF GYD + V A+ + G+ V+E Sbjct: 412 SMIRVDGASQFSGYDHEEQ-----------------------QATVTALFRDGQPVDEIH 448 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 G++ VV D+TPFY E+GGQ+GD G G ++D QK H + G+L+ Sbjct: 449 VGEEAVVVLDETPFYGESGGQVGDKGVLKTAGADFVVSDTQKYG-QAIGHQGKLSHGVLK 507 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 + + ID R ++ +NHSATHLLH AL LG HV+Q GS + LRFD +H + Sbjct: 508 VKDRVDAQIDIARRNRIRLNHSATHLLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEA 567 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + +++ +ED VN + +NLPV T +M +DA GA AL G KY+D VRV+++ Sbjct: 568 MKPEQIRVVEDLVNQQVRRNLPVQTEVMALDDAKEKGAMALFGEKYDDSVRVLTM----- 622 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I++ES AGIRRIEA+TG+ A + L Q++ L+ +A Sbjct: 623 GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIATLHQQNDLLQDVA 682 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII 801 +K N+ +V + + R L+ + K Q ++ + K+ V + + Sbjct: 683 QLVKGDNSNLTDKVRAVLDRTRALEKELQQLKDQQAAQESASLSSQAKKVNGVQLLVSQL 742 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 V++K L++++D L+ ++ S II+L + + K S++ VT+DL DR A +L A+ Sbjct: 743 DNVEAKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIAGVTKDLTDRVKAGELIGHVAQ 801 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + GG GGGRP MAQ+GG + + A+ V +++ Sbjct: 802 QV-GGKGGGRPDMAQAGGTDVSALPAALNSVEAWV 835 >gi|167627901|ref|YP_001678401.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|205830099|sp|B0TZY8|SYA_FRAP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167597902|gb|ABZ87900.1| Alanine--tRNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 865 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 378/900 (42%), Positives = 528/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W GL ++IIRI +NDNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLP E+G+RYIEIWN+VFMQF + LPK S+DTGMGLER+A VLQ+ Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI+ +++VT N + +V+ DH+RS +FLIADG+LP+NEGRGY Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNADDI--NSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG + L+ L +MG AYP+LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + L +I++G++AF+LYDT+G PLD+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDTEIVSLK-SDIISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + +Q+ R++ G + S+ + F GY L Sbjct: 417 EQMLKQKQRSKEA------GKFNVDYNSIINSQAKSDFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G+ V +G +V D+TPFYAE+GGQ+GD G G G+ Sbjct: 455 -------IEDAKVLEIYQDGQPVNAIQAGSTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +GIL T + ++ R + NHSATHLLH L Sbjct: 508 EFIVEDVQKSGE-AILHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKVLKI 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSH Q GS + + LRFD TH K I+ E++ IE VN I N PV T ++E A Sbjct: 567 ILGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L IVSES I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEAIT +A + + KL ++ K + N++ +++ + E+ + + AK K Sbjct: 682 IRRIEAITANKAIKYTFATENKLAAIKEITKSNDSNLLDKLQSMLEQLKNQEKEIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + D+ I + + + VD K L+ +D + K + +L K Sbjct: 742 DILSGANSDIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVL-STINADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V++ + A D+A+ + + G GGGRP MAQ GG N D+A++ + + + Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLENHI 859 >gi|238758257|ref|ZP_04619436.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236] gi|238703587|gb|EEP96125.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236] Length = 847 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 377/884 (42%), Positives = 534/884 (60%), Gaps = 56/884 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT + F+L + +L++TVY+ D+EA+++W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANEVG 120 Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERY 197 + ++IIRI N DNFW M +TGPCGPC+EIFFD G+ I GG PGS+ E+G+RY Sbjct: 121 VPCERIIRIGDNKGGAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAQEDGDRY 180 Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 IEIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240 Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 +VTG + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 EVTGAAD--LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 E L+ L MG A EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 KETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 + L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR Sbjct: 359 -GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------ 410 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 S + SL A+QF GYD + + V A+ + Sbjct: 411 SSGFGADYNSLIRVDSASQFSGYDHV-----------------------HQQATVTALFR 447 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 GE V+E +G++ VV +QTPFY E+GGQ+GD G + D QK H Sbjct: 448 NGEAVDEIHAGEEAVVVLNQTPFYGESGGQVGDKGELKNATAVFTVVDTQKYG-QAIGHL 506 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 + +G LR S+ +D R ++ +NHSATHLLH AL LG HV+Q GS + L Sbjct: 507 GQLTQGTLRVNHSVDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYL 566 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFD +H + + +++ +ED VN+ I +NLPV T +M + A GA AL G KY+D+VR Sbjct: 567 RFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVETEVMELDTAKEKGAMALFGEKYDDQVR 626 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 V+++ G S+ LCGG H S TG+I L I+SES AGIRRIEA+TG+ A + L Sbjct: 627 VLTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIAQLHQ 681 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792 Q + L+ +A +K N+ +V + + + L+ + K Q S + Sbjct: 682 QSDLLQDVAHLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLVK 741 Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852 + + V+ K L++++D L+ ++ S II+L + + K S+++ VT+DL + A Sbjct: 742 GAKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TAADDKVSLIVGVTKDLTGKVKA 800 Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +L A+ + GG GGGRP MAQ+GG + A+A V +++ Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843 >gi|323702194|ref|ZP_08113861.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] gi|323532881|gb|EGB22753.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] Length = 877 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 362/909 (39%), Positives = 549/909 (60%), Gaps = 49/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL FF++ GH++LPS+SLIP NDP++++T +GMVPFK FTGQ P Y+ V Sbjct: 1 MTGKEIREAFLRFFEERGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+++VGRT RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L Sbjct: 61 TTCQKCIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKEKAIPWAWEFVTEHLKLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+IT+Y +D+EAF +W + G+ A++I+R+ + NFW + GPCGPCSEI+ D GE Sbjct: 117 ADKLWITIYLDDDEAFDIWHNVVGVPAERIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGE 175 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++EIWNLVF+QF + + L IDTGMGLER+A+VLQ+ Sbjct: 176 TRGCGSPNCGVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLKNKGIDTGMGLERVASVLQQ 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +N+D DLF+ ++ + + G KY + +VI DH R+ +F + DG LP NEGR Sbjct: 236 VNSNFDTDLFREIMDFTANMVGQKYGQDARVDLALKVIADHCRAVTFAVNDGALPGNEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + R+LG EP + + A+ +M AYP+L Q I +R+E+ER Sbjct: 296 GYVIRRLLRRAVRFGRVLGVHEPFLYKVAGAVINQMAIAYPDLKQRTDHILRVIRTEEER 355 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL G +L ++S ++G AF+LYDT G PL++ ++I +GL+ +D Sbjct: 356 FLETLAAGSDILASLISEARAAGKTEISGQDAFRLYDTFGFPLELTREIASEQGLS-VDE 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+EEQR RAR+ + + + +L+E+ G T+F+GY L Sbjct: 415 DGFTAAMEEQRRRARSARQETEYLSERGVMYKALREELGETRFVGYGTL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V A+++ G AV+G++VE++ D TP YAE+GGQ+ D Sbjct: 464 ------------TADANVLALLKDGLQEISAVAGEEVEIILDVTPCYAESGGQVADYATL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + ++I V K EG+FVH V G+L+ S+ + +D + R+ + NHSATHLLH Sbjct: 512 TGPDLEVEIYSVNKPVEGLFVHRGKVVSGVLKRHDSVKVEVDARRRQDTARNHSATHLLH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS + PD LRFD TH +T ELK +E+ VN + NL V Sbjct: 572 KALKQVLGDHVNQAGSLVEPDRLRFDFTHYAALTPEELKQVEELVNQAVLANLSVDVFET 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A A GAAAL G KY +VRVV + G S LCGGTH++ T E+ L I++E+ Sbjct: 632 SLSKAKAMGAAALFGEKYGKQVRVVKM-----GDFSLELCGGTHLTCTAEVGLFKIINET 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG +L ++E+L+ +A+ +K + +V RVE + ++ + L+ Sbjct: 687 SVGAGLRRIEAVTGPGVLRYLAAKEEQLQEIAAVIKSPEHELVRRVEALVQQNKSLEQEI 746 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +L ++ ++ V ++ +++ D L+S++D L+ K+ SG+I+L Sbjct: 747 EALRGKLARAEVQDILGQVQEVKGVPVLAAVVAAPDMDNLRSMVDMLRDKLGSGVILLGS 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + E K +++ VT+DL+ R +A +L + AK++GGGG GGRP MAQ+GG + +K +A Sbjct: 807 KAGE-KVNLVAAVTKDLVGRGLHAGNLVKQIAKMVGGGG-GGRPDMAQAGGKDPSKLKEA 864 Query: 889 IAGVASFLK 897 I V + ++ Sbjct: 865 IDQVIAVVE 873 >gi|254283834|ref|ZP_04958802.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B] gi|219680037|gb|EED36386.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B] Length = 865 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 371/902 (41%), Positives = 523/902 (57%), Gaps = 46/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F+ H + SSSL+P +DPTL+FTN+GM FK F G E Y Sbjct: 1 MKTAEIREAFLSYFESQQHTRVASSSLVPHDDPTLLFTNAGMNQFKETFLGLEVRDYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW LT+ L Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQFAWTFLTEVLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITV+ D+EA +W G+ +++ R+ DNFW M +TGPCGP SEIF+D G Sbjct: 121 KARLWITVHISDDEAAAIWIDEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179 Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGG PGS ++ +RYIEIWNLVFMQF + LP S+DTGMGLER+A VLQ Sbjct: 180 DVPGGPPGSEDDDLDRYIEIWNLVFMQFNRDADGTLHPLPAPSVDTGMGLERIAAVLQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+IDLF+ LI A+ G+ + RVI DHLRS FL+ADG+LP NEGRGYV Sbjct: 240 HSNYEIDLFQALIAATAARLGVTD--LEHKSLRVIADHLRSCCFLVADGVLPGNEGRGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG P L+P L +MG AYPEL ++ I L +E+++F + Sbjct: 298 LRRIIRRAIRHGSKLGADGPFFSALVPELVAQMGDAYPELRDSESRIASALANEEDQFAR 357 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD GL +LDG L+ L ++ G++ F+LYDT+G P+D+ DI RG +D+ + Sbjct: 358 TLDNGLSILDGELAALS-GTVIPGELVFRLYDTYGFPVDLTNDIARERGFT-LDLDGYEA 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A++EQR R++ G+ + + + G T+F GYD Sbjct: 416 AMDEQRKRSQEG------GSFKVDYSNTVALEGETEFTGYD------------------- 450 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + + V A+++ G+ V G VV ++TPFY E+GGQ+GDTG + ++ Sbjct: 451 ----SGVSEATVMALLKDGDAVSTLEEGDDGIVVLNRTPFYGESGGQVGDTGFLSANDVK 506 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D K +HH + G L T+ S+ ID R+Q+ +NHSATHLLH AL + Sbjct: 507 AEVRDTTKAQGH-HLHHVKILSGTLATDASVRAEIDVSVRQQIRLNHSATHLLHAALRQV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + LRFD ++ KP++ EL +I D VN+ I N PV T M+ + A+ Sbjct: 566 LGEHVTQKGSLVDSQRLRFDFSNEKPVSKTELSTISDIVNEQIRGNTPVTTENMSMDAAM 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY D VRV+++ + S LCGGTHV TG+I +L IV+ES + AG+ Sbjct: 626 DAGAMALFGEKYGDSVRVLTMGNDR---FSVELCGGTHVERTGDIGVLKIVAESGVAAGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG RA + + +L ++ LK VV +V + E R L+ A+ K + Sbjct: 683 RRIEAVTGARALAAFAAGESQLDAVCEALKTRADTVVDKVTALRSEARDLEKEVARLKQK 742 Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + ++ I D L+ +D + K+ +++L + E K Sbjct: 743 LASASGGDLTADAVDVGGIKVLAATIDGADVATLRETLDQCKNKLGDAVVLLAAVEGE-K 801 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S++ V++ L + A DL R A LGG G GGRP MAQ GG + +A + ++ Sbjct: 802 ISLVAGVSKALTKQVKAGDLMREFAGRLGGKG-GGRPDMAQGGGSDVAALPAVLADLPNW 860 Query: 896 LK 897 ++ Sbjct: 861 VQ 862 >gi|241668454|ref|ZP_04756032.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876987|ref|ZP_05249697.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843008|gb|EET21422.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 865 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 374/900 (41%), Positives = 527/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W GL ++IIRI +NDNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLP E+G+RYIEIWN+VFMQF + LPK S+DTGMGLER+A VLQ+ Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI+ +++VT N + +V+ DH+RS +FLIADG+LP+NEGRGY Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNADDI--NSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG + L+ L +MG AYP+LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +T++ G+ + D ++ L + ++G++AF+LYDT+G PLD+ D+ +GL +D +F Sbjct: 359 RTIENGIKIFDTEIASLK-CDTISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + +Q+ R++ G + S+ + F GY L Sbjct: 417 EQMLKQKQRSKEA------GKFNVDYNSIINSQAKSNFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G+ V + +V D+TPFYAE+GGQ+GD G G G+ Sbjct: 455 -------IEDAKVLEIYQDGQPVNTIQAESTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +GIL T + ++ R + NHSATHLLH AL Sbjct: 508 EFIVEDVQKSGE-AILHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKALKI 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSH Q GS + + LRFD TH K I+ E++ IE VN I N PV T ++E A Sbjct: 567 VLGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L IVSES I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEAIT +A + + KL ++ K + N++ +++ + E + + AK K Sbjct: 682 IRRIEAITADKAIKYTFAIENKLAAIKEITKSNDSNLLDKLQSMLEHLKNQEKEIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + ++ I + + + VD K L+ +D + K + +L K Sbjct: 742 DILSGANSNIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVL-STINADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V++ + A D+A+ + + G GGGRP MAQ GG N D+A++ + ++ Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLEKYI 859 >gi|256003587|ref|ZP_05428576.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|255992378|gb|EEU02471.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|316939793|gb|ADU73827.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 1313] Length = 880 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 350/906 (38%), Positives = 550/906 (60%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK AI AW+ T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y++D+EAF++W K GL ++I+R+ ++NFW TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R+IE+WNLVF QF ++ L +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ ++TG++Y + V+ RVI DH+RS++ +I+DG++P+NEGRGY Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG P + + + E AYPEL + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GLV+L + K +++++GDV F+L+ T+G P+D+ ++I GL G+D Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + ++E ++ AR +S +K T+F+GY Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGYTESE------------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V I+++ ++V+EA G V V+ D+TPFYAE+GGQ+GD G + Sbjct: 467 ----------ATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEAE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G R+++ D +K +G ++H +E G LR M + TID + R ++ NH+ THLLH AL Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHV+Q GS + PD LRFD TH +T E+KS+ED VN+ I +++ V R M+ + Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY D VRVV + G +S LCGGTH++ T + + IVSES + Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG+ A H +++ L+ +A LK + + V R+E + E + Q + Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L +I V ++ + D + L++ D ++ K+ SG+++L G Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++++ T+D++ + +A ++ + +AKV GGGG GGRP MAQ+GG + +K D+A+ Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGG-GGRPDMAQAGGKDVSKIDEALKQ 869 Query: 892 VASFLK 897 ++ Sbjct: 870 AVKVIE 875 >gi|114566020|ref|YP_753174.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318869|sp|Q0AZQ1|SYA_SYNWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114336955|gb|ABI67803.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 880 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 372/910 (40%), Positives = 536/910 (58%), Gaps = 45/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR TFLE+F++ GH ++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MWSSAEIRKTFLEYFEERGHSVVESSSLVPVNDPTLLFTNAGMNQFKDVFLGLDKRKYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK AI AW+ LT+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDTVGRTPRHHTFFEMLGNFSFGDYFKREAIGYAWEFLTEVVGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++T+Y +D+EA LW +ISG+ +I+R+ DNFWSM +TGPCGPCSEI +D+G Sbjct: 121 PEEKLWVTIYQDDDEAADLWPEISGIDPGRIVRLGEKDNFWSMGDTGPCGPCSEILYDRG 180 Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P + +R++EIWNLVFMQF + E LP+ SIDTGMGLER++++L Sbjct: 181 IEYSCGAPDCGIGVCDCDRWLEIWNLVFMQFNRDESGEMTPLPRPSIDTGMGLERLSSIL 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296 Q +N+D DLF +I+ E++TG YE RVI DH R+ SFLIADG+LP+N+G Sbjct: 241 QGVDSNFDTDLFIPIIKRIEELTGKAYEQGERGFPFRVIADHSRACSFLIADGVLPSNDG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + R LG + + +C M AYPEL++ + I+E +R E+E Sbjct: 301 RGYVLRRILRRALRFGRFLGIEGSFLYKNVDVVCDIMQEAYPELLEKQDFIKEVIRLEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TL+ GL + ++ + D ++ G+ AF LYDT+G PLD+ +D+ +D Sbjct: 361 RFLLTLNDGLKKAEEIMERARQRGDNVIPGEEAFMLYDTYGFPLDLTEDMAEE-NQFTLD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++++EEQR RAR + G E++ + F GY+ Sbjct: 420 KAGFDRSMEEQRQRARQANKGEDLLGQERLLSEKLAGIAPSSFTGYEN------------ 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + S++ AI++ E++++A++G++V ++ +TPFYAE+GGQ+ D G Sbjct: 468 -----------SRDESVLLAIIKGSELMDKALNGEEVILITARTPFYAESGGQVADCGII 516 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G L++ DV+K + I H + G+L T + L +D R + NH+ATHLLH Sbjct: 517 KGQEGLLRVQDVKKLSAWI--LHYGIVEGVLTTGEGVSLQLDDPARMDTARNHTATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG H Q GS + P LRFD +H K ++S EL IE VN+ I + PV T + Sbjct: 575 RALREVLGEHAQQKGSLVEPARLRFDFSHLKALSSEELSRIEQMVNEAIWKLYPVTTTVT 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 A GA AL G KY + VRVV V+ +SS LCGGTHV +TG+I L I E Sbjct: 635 ALGQAREMGAMALFGEKYGEEVRVVQVDT-----YSSELCGGTHVQNTGQIGLFKITGEG 689 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI +G+RRIEAITG A ++ +++LK AS L+ S + R+E + ++ Sbjct: 690 SIGSGLRRIEAITGSYALEYIKQLEDELKKAASALRSSPLELAKRIENLNNSLKEKDKEI 749 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 +L+ ++ D + + D L+ + L+ K+ I+ML Sbjct: 750 ENLLQRLSRSSSDELVNKAFQLNDAWILIEEVDIEDPGSLRQNAEMLKDKLGRAIVMLAS 809 Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I E K S + V++DLL+ +A + +A+V GGGG GGRP MAQ+GG + +K +A Sbjct: 810 IKGE-KVSFVCFVSKDLLEQGLHAGKIVAAAAQVAGGGG-GGRPDMAQAGGRDKSKISEA 867 Query: 889 IAGVASFLKK 898 +A +KK Sbjct: 868 LAEARKMVKK 877 >gi|281416686|ref|ZP_06247706.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20] gi|281408088|gb|EFB38346.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20] Length = 880 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 350/906 (38%), Positives = 551/906 (60%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK AI AW+ T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y++D+EAF++W K GL ++I+R+ ++NFW TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R+IE+WNLVF QF ++ L +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ ++TG++Y + V+ RVI DH+RS++ +I+DG++P+NEGRGY Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG P + + + E AYPEL + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GLV+L + K +++++GDV F+L+ T+G P+D+ ++I GL G+D Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + ++E ++ AR +S +K T+F+GY Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGYTESE------------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V I+++ ++V+EA G+ V V+ D+TPFYAE+GGQ+GD G + Sbjct: 467 ----------ATARVLYIIKEDQVVDEAQKGESVTVILDRTPFYAESGGQVGDKGLIEAE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G R+++ D +K +G ++H +E G LR M + TID + R ++ NH+ THLLH AL Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHV+Q GS + PD LRFD TH +T E+KS+ED VN+ I +++ V R M+ + Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY D VRVV + G +S LCGGTH++ T + + IVSES + Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG+ A H +++ L+ +A LK + + V R+E + E + Q + Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L +I V ++ + D + L++ D ++ K+ SG+++L G Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++++ T+D++ + +A ++ + +AKV GGGG GGRP MAQ+GG + +K D+A+ Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGG-GGRPDMAQAGGKDVSKIDEALKQ 869 Query: 892 VASFLK 897 ++ Sbjct: 870 AVKVIE 875 >gi|125975678|ref|YP_001039588.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] gi|205830037|sp|A3DKB6|SYA_CLOTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|125715903|gb|ABN54395.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] Length = 880 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 350/906 (38%), Positives = 550/906 (60%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK AI AW+ T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y++D+EAF++W K GL ++I+R+ ++NFW TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R+IE+WNLVF QF ++ L +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ ++TG++Y + V+ RVI DH+RS++ +I+DG++P+NEGRGY Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG P + + + E AYPEL + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIKESKGAYPELAERAENIKKVIRIEEEKFE 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GLV+L + K +++++GDV F+L+ T+G P+D+ ++I GL G+D Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + ++E ++ AR +S +K T+F+GY Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGYTESE------------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V I+++ ++V+EA G V V+ D+TPFYAE+GGQ+GD G + Sbjct: 467 ----------ATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEAE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G R+++ D +K +G ++H +E G LR M + TID + R ++ NH+ THLLH AL Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHV+Q GS + PD LRFD TH +T E+KS+ED VN+ I +++ V R M+ + Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY D VRVV + G +S LCGGTH++ T + + IVSES + Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG+ A H +++ L+ +A LK + + V R+E + E + Q + Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L +I V ++ + D + L++ D ++ K+ SG+++L G Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++++ T+D++ + +A ++ + +AKV GGGG GGRP MAQ+GG + +K D+A+ Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGG-GGRPDMAQAGGKDVSKIDEALKQ 869 Query: 892 VASFLK 897 ++ Sbjct: 870 AVKVIE 875 >gi|71066015|ref|YP_264742.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4] gi|83305857|sp|Q4FRQ0|SYA_PSYA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71039000|gb|AAZ19308.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4] Length = 890 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 369/913 (40%), Positives = 523/913 (57%), Gaps = 54/913 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR F++FF H + SSSLIP NDPTL+FTN+GM FK F G E Y T Sbjct: 7 SADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVT 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I W+ LT + +D Sbjct: 67 SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAID 126 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RLY+T+Y+ D+EAF +W K G+ +++IIRI N DNFW+M +TGPCGPC+E Sbjct: 127 KNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 186 Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +F+D G I GGLP E+G+RYIEIWN VFMQF +Q LP S+DTGMGLER+ Sbjct: 187 VFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGTMLPLPAPSVDTGMGLERI 246 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q NY+IDLF HL+ A+ ++ ++ + +VI DH+R+ SFLIADG+ P+ Sbjct: 247 SAIMQGVHGNYEIDLFVHLMDAAAEILEIE--NQQQSSLKVIADHIRAVSFLIADGVTPS 304 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + LG ++ L EMG AYPEL + +IE T++ Sbjct: 305 NEGRGYVLRRVIRRAVRHGNKLGADSDFFYKMVAPLVAEMGIAYPELKDKQSVIENTIQK 364 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ +F KTL +GL LL L L + L+G+ AFKLYDT+G P+D+ DI RG I Sbjct: 365 EEAQFAKTLAQGLRLLASELEGLQDGDTLSGEAAFKLYDTYGFPVDLTADITRERG-IVI 423 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F++ ++ QR RAR +G + + S+ + T FIGY+ L Sbjct: 424 DEAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLEQEGVA---- 473 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + A+ Q G + G + VV D+TPFYAE GGQ+G+ G Sbjct: 474 ------------------IDALYQDGNPADSLTEGMEGVVVLDRTPFYAEGGGQVGELGE 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + D +K + I + +V G ++T+ + + R + NHSATHLL Sbjct: 516 IRTATGVFDVQDTKKSGQAIIHY-GVVTMGEIKTKQTADAQVLSSIRAASAKNHSATHLL 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG V+Q GS ++ + LRFD ++ KP++ AE+ IE VN+ I N P Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSPAEIMRIERLVNEQIQANTPTRIEN 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLL 708 M ++AI GA AL G KY + VRV+++ S LCGG HV TG+I +L Sbjct: 635 MPIDEAIKQGAMALFGEKYGNDVRVLTMGTDSIVDGQRMPFSIELCGGLHVQRTGDIGVL 694 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AGIRRIEA+T A ++ +++L LAS LKV + V RV + ++ R Sbjct: 695 KITSESGIAAGIRRIEAVTAMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ + + ++ IA + + +S VD K ++++MD ++ K+ Sbjct: 755 DLEKQLERLEQKIASAQAANLLDEVQTIAGIPLLISTLSGVDGKSIRTLMDDIKSKLPDS 814 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L+G K+++ ++ V + + DR A D+ R A LGG G GG+P AQ G P N Sbjct: 815 VIVLIG-DKDEQLALAANVAKSVTDRIKAGDIIRYLAGELGGKG-GGKPDYAQGGAPKSN 872 Query: 884 KADQAIAGVASFL 896 + IA + +++ Sbjct: 873 NSAAVIAALPAWV 885 >gi|118602853|ref|YP_904068.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|205830196|sp|A1AXE0|SYA_RUTMC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118567792|gb|ABL02597.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 865 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 369/902 (40%), Positives = 533/902 (59%), Gaps = 44/902 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F+ GH + S+SLIP ND TL+F N+GMV FK++F+G EK Y Sbjct: 1 MKTAQIRQKFLDYFESKGHTIESSASLIPHNDKTLLFVNAGMVLFKDVFSGVEKRPYMRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LTKE +L Sbjct: 61 VSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIYYAWEFLTKELNLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+++V++ED+EA +W G ++I R T DNFW M +TGPCGP SEIF+D GE Sbjct: 121 KEKLWVSVFEEDDEAENIWINEIGFPKNRISRCGTKDNFWQMGDTGPCGPSSEIFYDYGE 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P + E+G+RYIEIWNLVF QF++Q L +DTGMGLER+A VLQ K Sbjct: 181 HIAGGPPGHADEDGDRYIEIWNLVFTQFDKQEDGHLKPLAVPCVDTGMGLERLAAVLQHK 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV-NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD D F+ L++A +T N + RVI DH+RS++F+I DG+ P+NEGRGY Sbjct: 241 NNNYDTDGFQSLVKAIVNLTPKSNNIKNNNASVRVIADHIRSTAFMIVDGVNPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RR + + +G + L P L E AYPEL QA +E+ L+ E++RF Sbjct: 301 VLRRIIRRGIRHGHKMGIDKVFFYRLAPVLALEFKDAYPELKQALPKVEKVLKREEQRFS 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+G+ LL+ +++L EI +G FKLYDT+G P+D+ DI R L ID++ F Sbjct: 361 QTLDQGMRLLEDAITNLNGSEI-DGKTVFKLYDTYGFPIDLTADIARERHLT-IDMLGFE 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR RAR KI + G T+F+GY+ L Sbjct: 419 FEMTRQRDRARQA-------GDFKISKKNVDIIGVTEFLGYEQLENI------------- 458 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + A+V+ ++VEE +G+ VV Q+ FYAE+GGQ+GD+G I Sbjct: 459 ----------SSILALVKNSKLVEEIKAGEYGIVVLAQSSFYAESGGQVGDSGVLSNAKI 508 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ K+ G+F H+ ++ +G+L+ ++ +D ++R+ ++ NHSATHLLH AL Sbjct: 509 EFKVDHTNKQKSGVFEHYGVLNKGVLKVGDTIQANVDKKSRKCIARNHSATHLLHAALRI 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG V+Q GS + + LRFD +H + IT +++ IE +N I N V T I+N E+A Sbjct: 569 VLGETVTQKGSLVDSEKLRFDFSHDEVITKSDINKIEGMINRKILGNTKVHTDIINIENA 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A AL G KY+D VRV+++ +D S LCGGTHV G+I L I SES + AG Sbjct: 629 KKKDAIALFGEKYSDTVRVLTMGKDD---FSVELCGGTHVKQLGDIGLFRITSESGVSAG 685 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG A L ++ K + VV +V + ++ ++L+ + Sbjct: 686 VRRIEALTGYDAYQFDNQMQNSLSEISQMTKSNNAQVVEKVTQFIKQQKELEEQITIFQK 745 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 QL ++ ++ +S ++ K+L+++ D L+ K+ S +I+L +S + Sbjct: 746 QLTSNQGDDLIGQVQEVRNIKLLSTVVEGSSGKDLRNIADKLKDKLGSAVIVLAVVSND- 804 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S+++ VT+DL R+ AV + A+ + GG GGGRP MAQ GG +A+A V S Sbjct: 805 KVSLVVGVTKDLTKRYQAVKILNYVAEQI-GGKGGGRPDMAQGGGTQPEYLAKALASVKS 863 Query: 895 FL 896 + Sbjct: 864 LI 865 >gi|220903571|ref|YP_002478883.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867870|gb|ACL48205.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 892 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 366/916 (39%), Positives = 517/916 (56%), Gaps = 42/916 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +L+FF ++ HE++ S +IP NDP+L+F NSGMV FK +F G+EK Y Sbjct: 1 MLTAKEIRRRYLDFFHRHQHEIVASGPIIPPNDPSLLFANSGMVQFKKLFLGEEKRSYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GKHNDL+NVGRT RHHTFFEMLGNF+FG YFK AI AWD +TKE +L Sbjct: 61 ATTCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFAFGDYFKREAITWAWDFVTKELEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+ ED+EA LW +I+GL A++I+R+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 PKEKLWVTVFREDDEAAVLWAEIAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYVDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + G + + +R++EIWNLVF QF+Q R +L + +IDTGMGLERMA V Q Sbjct: 181 ADMSCGPDCGIGNCDCDRFLEIWNLVFTQFDQSADGTRTLLARPNIDTGMGLERMAAVAQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSSSFLIADGILP 292 K +N+D DLF+ +IQ + + G+ Y + RVI DH R+++FL+A G+LP Sbjct: 241 GKRSNFDCDLFQDIIQYAAGLAGVTYSFSAPDTNDVDTALRVIADHSRAAAFLVAGGVLP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRR++RRA+ +A L+G EP M + + MG AYPEL+++ I+ + Sbjct: 301 SNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGDAYPELVESADFIDRAVF 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E++RF TL +GL LL+ L+ L I + GD FKLYDT+G PLDI+ D+ RG Sbjct: 361 EEEQRFSLTLKKGLDLLEEELAALKARGITLIPGDFCFKLYDTYGFPLDIVTDVAEKRGF 420 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI----WFSLKEKYGATQFIGYDLLRGS 466 D F + ++EQR RAR H G + + SL + ++F+GY+ L Sbjct: 421 HA-DAEGFEKYMQEQRKRARDHQKKGGLLGQGEDGQSPFKSLADGGAESRFVGYEGLTAQ 479 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + G+ V+ G+ V + TPFY E GG Sbjct: 480 SPVT----------------------ILLDAAGQPVDVLGEGESGYAVTEATPFYGEGGG 517 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q GDTG ++ K A + VH V RG + + L +D R+ + N Sbjct: 518 QAGDTGLMSATSGEARVLTTHKPAPQLLVHEIEVVRGEILQGKEVRLAVDPDERKATARN 577 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ THLLH AL +LG HV Q GS + LRFD +H +T EL ++E VN I + Sbjct: 578 HTCTHLLHAALRRVLGPHVKQAGSLVDGRRLRFDFSHIAALTPEELAAVERQVNAAILAD 637 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-SSALCGGTHVSSTGEI 705 L V R M DA+A+GA AL KY VRV++V + S LCGGTH++ TGE Sbjct: 638 LEVSAREMPMADAVAAGAIALFNEKYGSTVRVLTVAGAEMCDPESVELCGGTHLARTGEA 697 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 +IVSES + AG+RRIEA+TG A H + Q +L SLA+ LK G + RV+ + Sbjct: 698 GAFFIVSESGVAAGMRRIEAVTGWNAYGHAVEQRAELGSLAALLKSKPGQLAERVQTLHG 757 Query: 766 EYRKLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 E +KL+ K ++ V ++ + V K L+ VMD ++ ++ Sbjct: 758 EVKKLRKASEKAAAAPASGAELVARAVEVNGVRLLAARLDNVPVKALREVMDDVRSRLSE 817 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + + +E K +L+ V++DL RF A L + A GG GGGRP MAQ+GG Sbjct: 818 NAVACLATVEEGKVGMLVYVSKDLHGRFTAPALIKTVAAPC-GGSGGGRPDMAQAGGNQP 876 Query: 883 NKADQAIAGVASFLKK 898 +A A + +++ Sbjct: 877 EGLAEAFAALKKCIEQ 892 >gi|303245636|ref|ZP_07331919.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] gi|302492899|gb|EFL52764.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] Length = 880 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 377/908 (41%), Positives = 524/908 (57%), Gaps = 42/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR FL+FF GH+ + SS LIP DP+L+FTN+GMV FK +F GQ+KP Y+ Sbjct: 1 MMTAHEIRAKFLDFFAAQGHQKVASSPLIPREDPSLLFTNAGMVQFKKVFLGQDKPGYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY TVY +D+EAF LW+K++GLS D+I R+ DNFWSM +TGPCGPCSEI +D+G Sbjct: 121 DKSRLYATVYQDDDEAFGLWQKVAGLSPDRIYRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + + +RY+EIWNLVFMQ++Q ER LP+ SIDTGMGLER+A V+Q Sbjct: 181 EEVSCGPDCGIGTCDCDRYLEIWNLVFMQYDQLESGERVALPRPSIDTGMGLERIAAVVQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+DIDLF+ +I + + G+ Y + RVI DH R+ +FL+ADG++P+NEG Sbjct: 241 GVHSNFDIDLFQTIIATAASIAGVTYGATDEQDTALRVIADHSRAVAFLVADGVMPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ + +L+G ++P + + MG AYPEL+ + +E +R E+E Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLFKTAGTVVEVMGDAYPELVATRDFMERMVREEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RFG TLD+GL +L L + ++ + G AFKLYDT+G PLDI+ D+ RG+ D Sbjct: 361 RFGVTLDKGLAILAEELDRMEAAGEKTITGQFAFKLYDTYGFPLDIVNDVAGKRGITT-D 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + + EQ++RA+ G G ++ L E ++F+GY+ L Sbjct: 420 EDGYKACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYETL----------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V A++ +G+ VE +G+ V TPFY E+GGQ GD G Sbjct: 469 ------------TAQSRVNALISAEGQAVERLTAGETGYAVCAVTPFYGESGGQAGDVGA 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +T K + HH + G + + L +D R + NH+ THLL Sbjct: 517 ITTLTGNATVTGTIKAGPELTAHHITIAAGEILLDQEADLAVDTAVRAATARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV+Q GS +TPD LRFD TH +T EL +ED VN I + PV T + Sbjct: 577 HKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELSRVEDEVNAAILLDAPVTTEV 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRVV V S CGGTH+S+TG+ I++E Sbjct: 637 LPLEAARAKGATALFGEKYGDTVRVVEVPG-----VSMEFCGGTHLSATGQAGSFLILAE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG RRIEA TG H+ +L K G + GR++++ ++ R L Sbjct: 692 SGVAAGTRRIEAATGLNTIKHVREMRGELDESLHAAKAKAGELPGRIKKLQDDIRALTKE 751 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +L +I V + + + K L+ MD L+ K+ SG++ + Sbjct: 752 KEQLAAKLASGQGRDLLSGLEEIGGVKVLCAKVDAPNIKALREAMDDLRSKVPSGVVAIA 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K S+++ V++DL RF A L + +A +GG G GGRP MAQ+GG N ++A Sbjct: 812 AEQDGGKVSLIVAVSKDLHGRFTAPALIKEAAAAVGGSG-GGRPDMAQAGGTNPAGIEEA 870 Query: 889 IAGVASFL 896 A V + + Sbjct: 871 FAKVRAVV 878 >gi|326342881|gb|EGD66649.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125] Length = 840 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 378/875 (43%), Positives = 535/875 (61%), Gaps = 56/875 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 +FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 2 LFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 61 Query: 97 SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ ++IIRI Sbjct: 62 SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 121 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E+G+RYIEIWN+VFM Sbjct: 122 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 181 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 182 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 239 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 240 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 299 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + L+G+ Sbjct: 300 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 358 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR + Sbjct: 359 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 411 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 ++ A++F GYD L ++ V A+ G+ V+ Sbjct: 412 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 448 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + G L+ Sbjct: 449 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLK 507 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 508 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 567 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 568 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 622 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A Sbjct: 623 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVA 682 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801 LK N+ +V + E R+L+ + K Q ++ + V + + Sbjct: 683 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 742 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ Sbjct: 743 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 801 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 802 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 835 >gi|325496257|gb|EGC94116.1| alanyl-tRNA synthetase [Escherichia fergusonii ECD227] Length = 839 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 379/875 (43%), Positives = 535/875 (61%), Gaps = 56/875 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ ++IIRI Sbjct: 61 SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E+G+RYIEIWN+VFM Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 238 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 239 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + L+G+ Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR + Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 410 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 ++ A++F GYD L ++ V A+ G+ V+ Sbjct: 411 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + G L+ Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLK 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801 LK N+ +V + E R+L+ + K Q ++ + V + + Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834 >gi|301026644|ref|ZP_07190061.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1] gi|299879631|gb|EFI87842.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1] Length = 839 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 379/875 (43%), Positives = 534/875 (61%), Gaps = 56/875 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ ++IIRI Sbjct: 61 SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E+G+RYIEIWN+VFM Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 238 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 239 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + L+G+ Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR + Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 410 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 ++ A++F GYD L ++ V A+ G+ V+ Sbjct: 411 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + G L+ Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLK 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 567 MKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801 LK N+ +V + E R+L+ + K Q ++ + V + + Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 S V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L + A+ Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834 >gi|255263093|ref|ZP_05342435.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62] gi|255105428|gb|EET48102.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62] Length = 884 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 426/893 (47%), Positives = 571/893 (63%), Gaps = 40/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IRT FL++++ GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MPSLNDIRTRFLDYYKSEGHEIVSSSPLVPRNDPTLMFANSGMVQFKNLFTGAESRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+++T+E + Sbjct: 61 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAINYAWNMVTRELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY +D+EA +WKK++GLS DKIIRI T+DNFW M TGPCGP SEIF+D G Sbjct: 121 NKDKLVVTVYHDDDEAAAIWKKVAGLSDDKIIRIATDDNFWMMGSTGPCGPSSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRSPLPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLIRALIEASANATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +PLM L+P+L +MG+AYPEL QA+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHVHLLGAQDPLMHRLVPSLVGQMGAAYPELGQAQALIEETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD L L + L G AFKLYDT+G PLD+ QD L +G G+D F+ Sbjct: 361 QTLERGLRLLDDELDGLAEGTDLPGQAAFKLYDTYGFPLDLTQDALREKGR-GVDSDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IW + ++ GAT F+GYD Sbjct: 420 EAMAEQKAKARAAWSGSGETVDATIWLDIADRDGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + + AIV+ G ++ A G V++V +QTPFY E+GGQ+GDTG DG+ Sbjct: 462 -----TETAEAQITAIVKHGAEIKSATVGDTVQIVVNQTPFYGESGGQVGDTGVVHADGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD +K A +F+H A + +G ++ L +D R Q+ NHSATHLLH AL Sbjct: 517 SARVTDTRKTAG-VFIHIAEITKGTFEVGTAVELNVDPTRRSQIRANHSATHLLHEALRQ 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H K ++ +L+S+E VN I QN V TRIM +DA Sbjct: 576 SLGDHVAQRGSLNAPDRLRFDFSHGKALSLEQLQSVEAEVNAYIRQNTGVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ G +S LCGGTHV TG+I ++ Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGAQPNSGRGSLGNTYSLELCGGTHVGRTGDIGAFVMLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ +G+RRIEA++GQ A +L QD +L +AS LK + RV+ + +E + L Sbjct: 696 DSASSSGVRRIEALSGQAAMDYLRTQDGRLAEVASVLKTPAADAPARVKALMDERKALAN 755 Query: 773 IHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + +L V + + + F++ ++S V K+L +++D + +I SG ++ Sbjct: 756 EVAQLRRELAVSGGGQTDAPAAEDVNGTKFLAQVVSGVTGKDLPALVDDYKAQIGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 L+ + K A VT D + +AVDL R + LGG GGGGRP MAQ GG Sbjct: 816 LIADAGGKAAV-AAGVTADKAEAVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 867 >gi|119478765|ref|ZP_01618604.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143] gi|119448344|gb|EAW29599.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143] Length = 874 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 359/924 (38%), Positives = 527/924 (57%), Gaps = 78/924 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF++ GH + SSSL+P NDPTL+FTN+GMV FK++F GQ+ Y Sbjct: 1 MKSSEIREAFLCFFEEKGHTRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDHRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + + Sbjct: 61 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAFAWEFLTAAEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + +L +TVY +D EA+ +WK + ++IIRI N DNFWSM +TGPCGPC Sbjct: 121 IPADKLTVTVYADDSEAYDIWKNEMLVPEERIIRIGDNKGVKYASDNFWSMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G I GG P E+G+R+IEIWN VFMQ+ + + LP S+DTGMGLE Sbjct: 181 SEIFYDHGPEIEGGPPGSPDEDGDRFIEIWNNVFMQYNRSSDGTMADLPAPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A V+Q+ NNY+IDLF++L+ A+ +V G+ + RVI DH+RS +FL+ DG+L Sbjct: 241 RIAAVMQDVHNNYEIDLFQNLLNAAAKVLGVND--TTDTSLRVIADHIRSCAFLVVDGVL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +G E L+ L EMG+AYPEL + + IE+ L Sbjct: 299 PSNEGRGYVLRRIVRRAVRHGNKMGAKEAFFYRLVAPLALEMGAAYPELPKLQSRIEKVL 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +E+++F KTLD+G+ +L+ L +L EI G+ FKLYDT G P+D+ DI RGL Sbjct: 359 LTEEQQFAKTLDQGMRILEADLDNLSGKEI-PGETIFKLYDTFGFPVDLTGDIARERGLT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+ QR RAR+ S ++ + G T F GYD L+ Sbjct: 418 -LDEPGFEKAMNAQRQRARSASHFKMELPSD------IDIDGETIFSGYDSLQ------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + A++ GE+V+ G++ VV TPFY E+GGQ+GD+ Sbjct: 464 ----------------AECEITALLNGGELVDRLTEGEQGVVVLASTPFYGESGGQIGDS 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R +++ K A+ +HH ++ +G L + + +D R+ ++NHSATH Sbjct: 508 GFMEVGATRFDVSETTKNADN-HLHHGVILQGGLSVGDKVSVQVDENVRQATTLNHSATH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + +T+ +L IE VN I N V T Sbjct: 567 LLHAALRQVLGDHVTQKGSLVDSKKLRFDFSHFEGLTADQLAEIETIVNQHIRHNSEVTT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + + A GA L G KY D+VRV+++ S+ LCGGTHVS TG I L+ I Sbjct: 627 TVTDMDHASELGAMMLFGEKYGDQVRVLAMG---DDGFSTELCGGTHVSRTGNIGLMRIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG+RRIEA TG A + + ++ +A+ +K S+ NV +++++ E +++L+ Sbjct: 684 AESGIAAGVRRIEATTGATALALFSDTERRIGEIAALVKGSRENVASKIQQVLESHKQLE 743 Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 ++ K ++ + + ++ + D K L + L+ K+ S +++ Sbjct: 744 KELSRLKSKMASAAGSELADQAVDVNGIRVVACQLEAADMKTLDDTVSKLKDKLGSSVVL 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL------------GGGGGGGRPHM 874 L I + K ++ V+ DL+ + A DL + A ++ G Sbjct: 804 LASIDGD-KINLACGVSSDLIKQVRAGDLMKYFAPLVGGKGGGKPDKAKG---------- 852 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 G + A+A VA ++++ Sbjct: 853 ---AGSDIAALPSALASVAVWVEE 873 >gi|134302304|ref|YP_001122273.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] gi|205830098|sp|A4IZ01|SYA_FRATW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134050081|gb|ABO47152.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] Length = 865 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 379/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|51244680|ref|YP_064564.1| alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54] gi|59798523|sp|Q6AQ16|SYA_DESPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50875717|emb|CAG35557.1| probable alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54] Length = 882 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 389/910 (42%), Positives = 558/910 (61%), Gaps = 45/910 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR+ FLE+F+ NGH + SSSL+P +DPTL+FTN+GMV FK +F G +K Y Sbjct: 1 MKGNEIRSRFLEYFKGNGHTVAESSSLVPKDDPTLLFTNAGMVQFKRVFMGDDKRGYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+ LT E L Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWNFLTVELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 +++++V+++D+EAF LW+K+ L +I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 121 AEKMWVSVFEDDDEAFALWEKVEDLPKGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGV 180 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + +R++E+WNLVFMQF + LP+ SIDTGMGLER+A VLQ Sbjct: 181 GSSPCDNPNCAVGCDCDRFLELWNLVFMQFNRAEDGSLTALPRPSIDTGMGLERVAAVLQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K NNYD DLF +I E ++G+KY + RVI DH R++SFL+ADG+LP+NEG Sbjct: 241 GKFNNYDSDLFAPIIAVLEDISGVKYGAAADTDTAIRVIADHARATSFLVADGVLPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRIMRRA+ Y + LG +P M + A+C EM +AYP+L+ L+E+ + +E+E Sbjct: 301 RGYVLRRIMRRAVRYGKKLGLEKPFMDRVTKAVCAEMQNAYPQLVATAALLEKVVNNEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 RF +TL+ GLV LD +S L D +++G FKLYDT G P DI++DI RG G Sbjct: 361 RFRETLEHGLVQLDEKISQLLTSGGDAVIDGPFIFKLYDTFGFPFDIVRDIALERG-VGF 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+ EQR+++RA G G ++ +L + +F+GY+ L Sbjct: 420 DEAGFATAMAEQRAKSRASRKGEGVKLHDEGVKALADAGKKAEFLGYEGLEAD------- 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V+ ++ + G VE+ V+G+K V TPFYAEAGGQ+GD G Sbjct: 473 ----------------SVVEGLLSEQGSGVEKLVAGEKGRVFVAATPFYAEAGGQMGDRG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + + Q + G+ +H +VE G L + + L +D + R+ + NHSATHL Sbjct: 517 SVRWQGGQASVYATQAEGTGLILHDLLVEEGELSLGLEVTLQVDDEERKATASNHSATHL 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++LG HV Q+GS + P+ LRFD T+ +T+AE+ +E VN+ I N + T Sbjct: 577 LQAALISVLGDHVKQSGSLVGPERLRFDFTNFSQLTAAEIAQVETLVNEQIRNNAVIATD 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++++++AIA GA AL G KY+D VRVVS+ G +S LCGGTHV +TGEI L I+S Sbjct: 637 VLSKQEAIAGGATALFGEKYDDDVRVVSM-----GDYSRELCGGTHVGATGEIGLFVILS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG+ A +++ G+ LA L G++V +VE + ++ + Sbjct: 692 ESGIAAGVRRIEALTGRAALAYVQGRLSTGNELADLLSCKSGDLVPKVESLLTAVKEGEK 751 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ QL L + +A + + + ++K L+ + D ++ ++SGI ++ Sbjct: 752 RVAQLAGQLASSGLDDLLNNALTVAGIKVVVAEVPLENAKALRELGDKVRDNLESGIAVI 811 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G K ++L +VT+DL+DR A + + ++GG G GGRP MAQ+GG +K + Sbjct: 812 GGAV-GGKVALLAIVTKDLVDRIQAGRIVSEVSGIVGGKG-GGRPDMAQAGGTMPDKLSE 869 Query: 888 AIAGVASFLK 897 AIA V + ++ Sbjct: 870 AIASVPAIIE 879 >gi|320180884|gb|EFW55807.1| Alanyl-tRNA synthetase [Shigella boydii ATCC 9905] gi|320189025|gb|EFW63684.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212] Length = 839 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 379/875 (43%), Positives = 535/875 (61%), Gaps = 56/875 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ ++IIRI Sbjct: 61 SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E+G+RYIEIWN+VFM Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 238 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 239 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + L+G+ Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR + Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 410 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 ++ A++F GYD L ++ V A+ G+ V+ Sbjct: 411 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + G L+ Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLK 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801 LK N+ +V + E R+L+ + K Q ++ + V + + Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834 >gi|194365256|ref|YP_002027866.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3] gi|194348060|gb|ACF51183.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3] Length = 882 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 381/892 (42%), Positives = 536/892 (60%), Gaps = 49/892 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGIPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++TG + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+P L +MG AYPEL A + L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAADTVTRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + ++ G AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I F+ A+E+QR ARA G + L T+F+GYD L+ Sbjct: 424 IAGFDAAMEQQRETARAAGKF---GGGVTLPAELVATLSPTRFLGYDRLQADGL------ 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++ G V+ A +G V V+ +QTPFYAE+GGQ+GDTG Sbjct: 475 ----------------TVLAVLKDGRPVQSANAGDAVIVITNQTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G+RL + D QK A H I+ G L+ L +D + R +NHSATHLLH Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGILSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI++ EL IE VN + N M Sbjct: 579 AALREVLGTHVQQKGSMVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A ++ ++ +L A L S +VV ++ + + ++L+ Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAADLLGGSAADVVEKIRALGQRQKQLEREL 753 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K ++ + ++A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 754 ESVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ KA+++ V + + A +L A +GG G GGRP +AQ GG + Sbjct: 814 A-QDGKAALVAGVNGSAMGKVKAGELLSHIAGQIGGKG-GGRPDLAQGGGED 863 >gi|254374194|ref|ZP_04989676.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548] gi|151571914|gb|EDN37568.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548] Length = 865 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 378/900 (42%), Positives = 529/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +G +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGFK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQFKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A + + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRYTFTSENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|146328813|ref|YP_001209206.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A] gi|205830079|sp|A5EW88|SYA_DICNV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146232283|gb|ABQ13261.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A] Length = 873 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 365/899 (40%), Positives = 520/899 (57%), Gaps = 56/899 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL +F +NGH+++ S+SL+P NDPTL+FTN+GMVPFK +F G E Y+ Sbjct: 4 MTTAEIRRAFLNYFSENGHKIVHSASLVPGNDPTLLFTNAGMVPFKELFIGTETRDYRRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT+ L Sbjct: 64 TSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWRFLTEVLQLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 +L +TVY ED+EA+++W++ GL AD+IIRI DNFW+M +TGPCGPC+ Sbjct: 124 AEKLLVTVYHEDDEAYRIWQEKIGLPADRIIRIGDKAGKAKYESDNFWAMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G I GG PGS E+G+R+IEIWN+VFMQFE+ + LPK SIDTGMGLER Sbjct: 184 EIFYDHGAEIFGGRPGSADEDGDRFIEIWNIVFMQFERDAEGTMKPLPKPSIDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A V+Q +NYDIDLF HLI A+ + G K + +VI DH+R++ FL+ DG+LP Sbjct: 244 IAAVMQGVHSNYDIDLFIHLIDAAAKAVGCK--NEGQASLKVIADHIRATVFLMVDGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRIMRRA+ + LG L+ AL EMG AYPE+I + I ET+R Sbjct: 302 SNEGRGYVLRRIMRRAIRHGYKLGQQGLFFHKLVAALVAEMGEAYPEIIAEQARITETIR 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ RF +TL G+ +L+ L+ L I++G+ FKLYDT+G P+D+ DI RGL Sbjct: 362 KEELRFAQTLTAGMQILEQDLATLK-GTIISGETVFKLYDTYGFPVDLTNDIARERGLT- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + ++ QR RA+A T G T F+ Y Sbjct: 420 LDEAGYEALMQAQRERAKASGTFRADKTYTVS--------GKTAFLAYQQ---------- 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S ++AI Q + + G + +V +Q+PFY E+GGQ+GD+G Sbjct: 462 -------------EQTESTIEAIFVQEQAADTLDCGDEAVLVLNQSPFYGESGGQIGDSG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++D QK+ + + +H ++RG+L ++ ID R + +HSATHL Sbjct: 509 VIYHQNGAFLVSDTQKQGDVL-LHFGRLQRGVLSVGDTVCAEIDRARRAAIRRHHSATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG+HV Q GS + D LRFD +H +T+AE+ ++E +N+ I +N PV Sbjct: 568 LHQALRMTLGTHVQQKGSLVDADKLRFDFSHDAALTAAEIGAVEQLINEQILRNQPVNIS 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M + A A GA AL G KY D VRVV + +D S LCGGTHV TG++ L+ I++ Sbjct: 628 EMPYDQACAQGAMALFGEKYGDIVRVVKMGADD---FSVELCGGTHVKQTGDLGLVKIIA 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S++ AGIRR+E + G A + Q+ +L+ +A+ LK + V ++E + ++ + L+ Sbjct: 685 QSAVAAGIRRVECVAGLAALRYCQQQETQLQRIAAVLKSDLEHSVEKIERLQQDTKTLEK 744 Query: 773 IHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K + + S I M+ ++D+ L+ D L+ K Q ++++ Sbjct: 745 TVQQLKRTVALGGTQETAESVVDIHGWKTMAVRRDDLDNAILRDTADQLRDKYQLDVVVI 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 E A +++ V + A + + A + G GGGRP AQ+GG N D Sbjct: 805 GSSDGE-MARLVVSVAKSAAA-LKAGAIVQTLAAFI-DGKGGGRPDFAQAGGKNIQGLD 860 >gi|291286777|ref|YP_003503593.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290883937|gb|ADD67637.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 877 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 353/905 (39%), Positives = 515/905 (56%), Gaps = 43/905 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FLE+F ++GHE++ SSSL+P +DPTL+FTN+GM FK+ F G+E Y Sbjct: 3 MTGQEIRKKFLEYFAEHGHEIVSSSSLVPHDDPTLLFTNAGMNQFKDTFLGRETRSYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QK VRAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+ W+ LTK L Sbjct: 63 TTSQKVVRAGGKHNDLENVGVTSRHHTFFEMLGNFSFGDYFKEDAIKFGWEFLTKVVGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +++++VY++DEEA ++W+ + GL A I DNFW+M +TGPCGPCSEI DQGE Sbjct: 123 AEKMFVSVYNDDEEAAQIWRDVIGLDAKDIEYRGEKDNFWAMGDTGPCGPCSEIHIDQGE 182 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + E +R++E+WNLVFMQ+ + LPK SIDTGMGLER+A+V+Q Sbjct: 183 HTGCQSPDCDRNCECDRHLELWNLVFMQYNRSEDGTLTPLPKPSIDTGMGLERVASVVQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 T+NYD DLF +I+ + G KY + V+ RVI DH R+++FLI DG+LPAN+GR Sbjct: 243 VTSNYDTDLFLPIIKYIADLAGKKYGDSEKDNVSMRVIADHSRAATFLIGDGVLPANDGR 302 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRAM + R+LG + + M Y EL K I + + +E++ Sbjct: 303 GYVLRRIMRRAMRHGRMLGLEGAFFYKVCGFVVDFMKGHYIELADKKPYIAKVVTNEEQS 362 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TL+ GL ++D +L + ++G+ FK+YDT G P+D++ DI G +D Sbjct: 363 FSRTLNTGLKIIDELLEKNKDSKTISGEDIFKMYDTFGFPVDLLADIAEDNGY-VLDNAG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F Q + Q+ RA+ G G ++ L ++F+GY+ L Sbjct: 422 FEQEMHTQQERAKKSWSGSGEQRVADVYIKLASTL-KSEFVGYEELE------------- 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V AI++ E A + +++ +TPFYAE GGQ GD G D Sbjct: 468 ----------AESEVAAIIKNDAQSETAEG--ECDIILTKTPFYAEGGGQAGDIGYIKTD 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++T K +G+ E G+++ ++ +D RR NH++TH+LH AL Sbjct: 516 TAVFKVTGTHKYGDGMIAMRGFTELGVIKMGETVKAQVDKTARRATERNHTSTHILHKAL 575 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + P+ LRFD H P+++ E+ IE+ N+ I N + MN + Sbjct: 576 QMVLGDHVRQAGSQVNPERLRFDFNHYAPVSAEEIMRIEEIANEEIQANTALKKTYMNID 635 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA+ SGA AL G KY ++VRVV + G S LCGG HV TG+I LL + SE+S+ Sbjct: 636 DAVNSGAMALFGEKYGNKVRVVEI-----GDFSKELCGGCHVDRTGDIGLLKVTSEASVA 690 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG A + + D K A LK + + R+ E+ + + + K Sbjct: 691 SGVRRIEAVTGMAAVAGMQKLDALAKDGAKLLKTTPDGLYERMVELTDSLKDKEKELKKI 750 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 Q+ +D + ++ + ++ ++ D+ ++ +D + +I SG+++ G Sbjct: 751 ADQMASKDAAGLMDDVKIVSGIKVLAAKLANGDADAMRKFVDTARDRIGSGVVV-AGAVT 809 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K + VT+D + A D+ R AK+ GGGG GGRP MAQ+GG + K D+AIA V Sbjct: 810 DDKVIFVCGVTKDTTGKVKAGDIVREVAKITGGGG-GGRPDMAQAGGKHPEKLDEAIANV 868 Query: 893 ASFLK 897 ++ Sbjct: 869 EKIVE 873 >gi|224457282|ref|ZP_03665755.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370663|ref|ZP_04986668.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis FSC033] gi|254874986|ref|ZP_05247696.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|151568906|gb|EDN34560.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis FSC033] gi|254840985|gb|EET19421.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis MA00-2987] Length = 865 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 378/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ ++++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|208779166|ref|ZP_03246512.1| alanyl-tRNA synthetase [Francisella novicida FTG] gi|208744966|gb|EDZ91264.1| alanyl-tRNA synthetase [Francisella novicida FTG] Length = 865 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 380/900 (42%), Positives = 530/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|313672790|ref|YP_004050901.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312939546|gb|ADR18738.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 873 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 379/905 (41%), Positives = 553/905 (61%), Gaps = 43/905 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL++F+K+GH+++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MISGKDIREKFLKYFEKHGHKIVDSSSLVPQNDPTLLFTNAGMNQFKDLFLGLEKREYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE L Sbjct: 61 ATTCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++++Y +DEEAF++W K+ G+ A+KI+R DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PEEKLFVSIYYDDEEAFEIWNKVIGIPAEKILRRGEKDNFWSMGDTGPCGPCSEIHIDQG 180 Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 P + + +R++E+WNLVFMQ+++ + LPK SIDTGMGLER+ V Q Sbjct: 181 PEAGCRKPDCNPDCDCDRHLELWNLVFMQYDRSADGKLTPLPKPSIDTGMGLERITAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K +NYD DL K +I+ + ++ G Y + V+ RVI DH RS++FLIADG++P+NEG Sbjct: 241 GKLSNYDTDLIKPIIEFTAKLAGKNYGNNEKDDVSLRVIADHSRSTTFLIADGVIPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRIMRRAM + ++LG+ + + MG Y EL K I + + E++ Sbjct: 301 RGYVLRRIMRRAMRHGKMLGFDGTFFYKVCEFVVDFMGDHYIELKDKKDYISKMVAFEEK 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +TLD GL L+D +L + ++G FKLYDT+G P+D++QDI G +D++ Sbjct: 361 RFSRTLDLGLKLIDELLEKNKDRKEISGSEIFKLYDTYGFPIDLLQDIAEDNGYK-LDLM 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ + Q+ RA+ H +G G +++ L + T+F GYD Sbjct: 420 GFDKEMALQQERAKKHWVGSGEEKIAEVYKKL--SHLKTEFQGYDN-------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + +SS + A+++ GE +E G++V+++ +QTPFY E GGQ GDTG Sbjct: 464 ---------HSLSSKILALIENGEEKQEVQEGKEVDILLEQTPFYPEGGGQQGDTGTIYS 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ D +K + VH AIV++G L+ ++ ID R NH++THLLH A Sbjct: 515 REAIAEVKDTKKYGN-LIVHKAIVKKGTLKVGENVTAEIDSVKRIATERNHTSTHLLHKA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS + + LRFD +H + I+ ++ IE VN II +NL V +M Sbjct: 574 LQMVLGDHVRQAGSLVNDEKLRFDFSHFEAISKDDIIEIERIVNSIIIKNLSVTKTLMPI 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A+ SGA AL G KY+ VRVV V S LCGG HV +TGEI I+ E S+ Sbjct: 634 EEAVKSGAMALFGEKYDRIVRVVEV-----SDFSKELCGGCHVRNTGEIGFFRIIGEMSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG +A + L + +KVSQ +V RV+++ EE + ++ Sbjct: 689 AAGVRRIEAVTGMKAFDEYVKMKNILDDIMLTIKVSQDQIVSRVKDLLEENKAIKKDLDD 748 Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 +K + ++ + + I V +S IS D +++ + D ++ KI+SGI+++ I+ Sbjct: 749 QKSRELMKMMEDLDRYTYDINGVKLISIKISYPDINKVRELADNIKDKIKSGIVLIAAIN 808 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K ++L +T DL DRF+A + + K+ GGGG GGR AQ+GG + +K D+A+ Sbjct: 809 ND-KLTILCGITRDLTDRFSADKIVKEITKITGGGG-GGRSDFAQAGGKDISKLDEALTK 866 Query: 892 VASFL 896 + SFL Sbjct: 867 IKSFL 871 >gi|254372737|ref|ZP_04988226.1| hypothetical protein FTCG_00305 [Francisella tularensis subsp. novicida GA99-3549] gi|151570464|gb|EDN36118.1| hypothetical protein FTCG_00305 [Francisella novicida GA99-3549] Length = 865 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 379/900 (42%), Positives = 530/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGDHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ + A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|56708179|ref|YP_170075.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670650|ref|YP_667207.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|81597416|sp|Q5NFW7|SYA_FRATT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123169359|sp|Q14HB9|SYA_FRAT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56604671|emb|CAG45729.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320983|emb|CAL09112.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|282159393|gb|ADA78784.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis NE061598] Length = 865 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 377/900 (41%), Positives = 530/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG Y +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEVYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ ++++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|258515483|ref|YP_003191705.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257779188|gb|ACV63082.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 878 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 361/910 (39%), Positives = 539/910 (59%), Gaps = 49/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FL FF K GH ++PS+SLIP NDP++++T +GMVPFK FTG P + V Sbjct: 1 MTGNEIRDSFLNFFAKRGHYIIPSASLIPANDPSILWTAAGMVPFKPFFTGAATPEHTRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RHHTFFEMLGNFSFG YFK AI AW+ +T L Sbjct: 61 TTCQKCLRT----PDIDVVGKTARHHTFFEMLGNFSFGDYFKTEAINWAWEFVTVNLGLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+I++Y+ D+EAF++W K + ADKIIR+ + NFW + GPCGPCSEI+ D GE Sbjct: 117 KEKLWISIYENDDEAFEIWHKQVAIPADKIIRLGKDTNFWEIG-VGPCGPCSEIYIDLGE 175 Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G + +RY+EIWNLVF+QF + + L IDTGMGLER+A+VLQ+ Sbjct: 176 HRGCGSADCGVGCDCDRYLEIWNLVFIQFFRDEEGNYTPLENKGIDTGMGLERVASVLQD 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 N+D DL + ++ + + + Y ++ + +VI DH R+ +F I DG LP+NEGR Sbjct: 236 VRTNFDTDLLREIMDYTAEQLKVIYGKDDKTDLALKVIADHSRAVTFAIGDGALPSNEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + R LG E + + A+ +M Y +L + I++ + +E++R Sbjct: 296 GYVIRRLIRRAVRFGRSLGVDELFLHKVAGAVIHQMSGTYTDLGSNQGHIKKVILNEEKR 355 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL G +L+ ++ + + +++G AF+LYDT+G PL++ Q+I +GL ID Sbjct: 356 FSETLANGTEILNKLIEEAIRAGNAVISGLDAFQLYDTYGFPLELTQEIAGEQGL-LIDE 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 SF QA+E QRSRAR+ + + + +++++ G T FIGY+ L+ Sbjct: 415 DSFVQAMESQRSRARSARQETEYISETGVLYKNIRDERGTTNFIGYNALQ---------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V A+V+ G+ V+ A +G ++E+V D TP YAEAGGQ+ D Sbjct: 465 -------------AEAKVLALVKDGQNVQSAQAGDEIEIVLDITPCYAEAGGQVTDFAVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + + I+ V K E + VH VE G+L+ ++ + + + R ++ NHSATHLLH Sbjct: 512 SGQDLNVMISQVIKPVENLIVHKGKVESGLLQVNDTVKIEVAGERRLSIARNHSATHLLH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS + PD LRFD TH +++ EL IE VN I NLPV Sbjct: 572 KALKEVLGEHVNQAGSLVEPDRLRFDFTHYAAVSNEELNKIEKIVNRTILSNLPVTVSES 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A GAAAL G KY D VRVV + G S LCGGTH+ ST EI L ++SES Sbjct: 632 SLSKAREMGAAALFGEKYGDLVRVVKM-----GEFSLELCGGTHIHSTAEIGLFKLISES 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI +G+RR+EA+TG+ A ++ ++++L LA +K S +V RVE I + ++L+ Sbjct: 687 SIGSGLRRVEAVTGEGALHYIETKEQQLLMLAHLVKSSPNELVRRVESIIKSVKELEHES 746 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L ++ I ++ ++ S D L++++D L+ KIQSGI+ L Sbjct: 747 EALKAKLARFEVENLLSQVKMIKNIKVLAAKASAADMDSLRAMVDLLRDKIQSGIVFL-S 805 Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + KA+++ VT+DL +A L + A V+GGGG GGRP MAQ+GG + ++ +A Sbjct: 806 AANNGKANLVAAVTKDLTSIGLHAGKLIKEVAPVVGGGG-GGRPDMAQAGGKDASRIPEA 864 Query: 889 IAGVASFLKK 898 I V + + + Sbjct: 865 IEKVYTVVAE 874 >gi|28198031|ref|NP_778345.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1] gi|182680658|ref|YP_001828818.1| alanyl-tRNA synthetase [Xylella fastidiosa M23] gi|32130077|sp|Q87F43|SYA_XYLFT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830289|sp|B2I6K2|SYA_XYLF2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28056091|gb|AAO27994.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1] gi|182630768|gb|ACB91544.1| alanyl-tRNA synthetase [Xylella fastidiosa M23] gi|307579119|gb|ADN63088.1| alanyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 884 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 365/910 (40%), Positives = 539/910 (59%), Gaps = 50/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V Sbjct: 8 TTSKIRSDFLEFFKNKGHKIVPSAPLVPSNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ ++L Sbjct: 68 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQVWELPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I G E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + ++T + N + VI DH R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLCVIADHSRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLIAVMGDAYPKLQAAAESVMRTLLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+ +QR ARA G ++ T F+GY+ L+ Sbjct: 424 MAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAATLSPTVFLGYEQLQADDL------ 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 475 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +K G F H + +G ++ L ++ R+ +++NHSATHLL Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++ G+HV Q GS + PD LRFD +H +PI++A++ IE VND + N V+ Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A+ +GA AL G KY + VRVV++ S LCGGTH++ TG+I L I+SE Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHITRTGDIGLFKIISE 692 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG+ A +H++ ++ +L +A + + NVV + ++ + + L+ Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANNVVNHIRQLTDRQKTLERE 752 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K +L ++ +ADV ++ + +D K L+ +D L+ ++ +I+L Sbjct: 753 LEKLKGKLISGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ K A V V + + A L A + G GGGR AQ GG +G A Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871 Query: 889 IAGVASFLKK 898 + GVA+++K+ Sbjct: 872 LDGVATWVKQ 881 >gi|317122060|ref|YP_004102063.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885] gi|315592040|gb|ADU51336.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885] Length = 905 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 370/894 (41%), Positives = 531/894 (59%), Gaps = 44/894 (4%) Query: 18 NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDL 77 +GH ++PSSSLIP +DPTL+FTN+GMV FK++FTG+EK Y+ TT QKC+RAGGKHNDL Sbjct: 32 HGHTIVPSSSLIPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATTAQKCMRAGGKHNDL 91 Query: 78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAF 137 +NVG+T RHHTFFEMLGNFSFG YFK AI AW LT+E L + RL+ T+Y ED+EAF Sbjct: 92 ENVGKTARHHTFFEMLGNFSFGDYFKRDAIHFAWTFLTEELGLPKERLWATIYREDDEAF 151 Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEG 194 +LW++++G+ A +I+R+ DNFW+M +TGPCGPCSEI +D+GE + + Sbjct: 152 QLWQEVTGIPASRIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEFRCEAETCAIGACDC 211 Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254 +R++EIWNLVFMQF + LP+ SIDTGMGLER+A+V+Q +N+D DLF+ LI+ Sbjct: 212 DRWLEIWNLVFMQFNRDETGRMEPLPRPSIDTGMGLERIASVMQGVASNFDTDLFRPLIR 271 Query: 255 ASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313 A E++TG +YE RVI DH R+ +FLIA+G+LP+NEGRG+VLRRI+RRA+ + R Sbjct: 272 AVEELTGRRYEEGEPGFPFRVIADHARACTFLIAEGVLPSNEGRGHVLRRILRRAVRFGR 331 Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373 +LG EP + L+ + MG AYPE+ Q + +R E+ERF +TLD+G+ +L V+ Sbjct: 332 ILGIQEPFLYRLVDTVGEVMGGAYPEVRQRADYVARVIRGEEERFFRTLDQGMAILAEVI 391 Query: 374 --SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431 + D ++ G+ AF LYDT+G PLD+ D GL +D F QA+ QR RARA Sbjct: 392 ERARARGDGVIRGEEAFVLYDTYGFPLDLTVDAAEEAGLR-VDREGFEQAMAVQRQRARA 450 Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491 AT F GY+ L Sbjct: 451 AREVAEGWDPGSPLALALADEPATVFTGYERLED-----------------------EGT 487 Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551 V+ +V+ + VE A +G++V VV D+TPFYAE GGQ+GDTG G RL++ D Q Sbjct: 488 VRLLVRGDQPVERARAGEEVGVVLDRTPFYAERGGQVGDTGWLEAPGARLEVLDTQPLPG 547 Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611 G F+H A V G + + +D R + NH+ATHLLH AL +LG HV+Q GS Sbjct: 548 GRFLHKARVVEGTVTVGDRVQGRVDAARRAAIMRNHTATHLLHAALKRVLGDHVNQAGSL 607 Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671 + PD LRFD TH + T +L++IED +N +I +PV + E+A+ +GA AL G K Sbjct: 608 VAPDRLRFDFTHFEAPTPDQLRAIEDEINGVILAGVPVRWYWTSLEEALEAGAMALFGEK 667 Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 Y VRVV + G +S LCGGTHV+ST +I L +E S+ AG+RR+EA+TG + Sbjct: 668 YGREVRVVQI-----GDYSLELCGGTHVASTSDIGLFKFTAEGSVAAGVRRVEAVTGWSS 722 Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----L 786 +L ++ L+ LA L+V ++ R+E + E +R L+ + + +L + Sbjct: 723 LEYLRQREAVLQRLAGTLRVPVDDLPERLEALVEAHRDLERQLRQLRGRLARQAADGLLA 782 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 A V + + D++ L+ D L+++ ++L S + +A ++ +T Sbjct: 783 EAPVAAGVRVIVGELPVDDAEVLRETADYLRQRAGEAAVLLGARSGD-RALLVAAITPGA 841 Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS-FLKK 898 R +A L A+ +GGGG GGRP +AQ+GG + +A+ +L++ Sbjct: 842 QQRGLHAGRLVGDVARRVGGGG-GGRPDLAQAGGREPGRLAEALDYGRRLWLEQ 894 >gi|315645820|ref|ZP_07898941.1| alanyl-tRNA synthetase [Paenibacillus vortex V453] gi|315278581|gb|EFU41895.1| alanyl-tRNA synthetase [Paenibacillus vortex V453] Length = 875 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 357/913 (39%), Positives = 515/913 (56%), Gaps = 56/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 1 MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L +TVY EDEEAFKLW + GL +II++ DNFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPEKLSVTVYPEDEEAFKLWNEKIGLPESRIIKL--QDNFWEIGE-GPCGPCTEIFYDR 173 Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 GE G P S E ER++E+WNLVF QF LP +IDTG GLER A+ Sbjct: 174 GEEYGKGTPESEMFPGGENERWLEVWNLVFTQFNLNKDGSYTPLPNKNIDTGAGLERFAS 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ +N+D DLF+ +IQ + ++ G+KY V +VI DH+R+ F + DG+LP+ Sbjct: 234 ILQNVDSNFDTDLFQPIIQRTAELAGVKYNDSPEYDVALKVIADHIRTVVFAVGDGVLPS 293 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ Y ++LG +P M L + MG YPE+++ + IE+ + + Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTETVGDIMGVYYPEVVEKRAFIEKVVAT 353 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL GL +L V + K +++G AFKLYDT+G P D+ +D GL Sbjct: 354 EEEQFHKTLSDGLGILAEVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASENGLT 413 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+EEQR RARA S + L + ++F+GY+ Sbjct: 414 -VDREGFDAAMEEQRDRARAARHETESMKIQGGV--LSDYTVKSEFVGYNDT-------- 462 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V AIV + GQ +V+ D TPFYAE+GGQ+ D Sbjct: 463 ---------------VREAKVLAIVSDDSFADSVSEGQTCQVILDATPFYAESGGQVSDQ 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G +R ++ + K G VH VE G L+ ++ ++ R + NH+ATH Sbjct: 508 GVLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVTAQVNASMRNDIVKNHTATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN+ + +++PVV Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELGDIERRVNEQVWKSIPVVI 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++A A GA AL G KY D VRVV V G +S LCGG HV +T +I + ++ Sbjct: 628 ERKGIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVGNTSQIGIFKLL 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ES I +G+RRIEA+TG+ A HL Q + LK A LK + +V R+E + ++ + L Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEEQLDLLKQAAGLLKSNLTDVPKRIEGLNQQVKDLA 742 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L + S ++ + ++ + L+ + D L+ K+ I++ Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTPLLAVEVQAGSMDGLRGIADELKGKLPDAILV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K + ++ V +DL+ + ++A L + A V GGGG GGRP MAQ+GG + +K Sbjct: 803 L-GSKADDKVNFVVAVPQDLVKKGYHAGKLVKEVASVCGGGG-GGRPDMAQAGGKDASKL 860 Query: 886 DQAIAGVASFLKK 898 QA+ + K Sbjct: 861 AQALQHAEELVAK 873 >gi|89256431|ref|YP_513793.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115314869|ref|YP_763592.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica OSU18] gi|156502533|ref|YP_001428598.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010686|ref|ZP_02275617.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC200] gi|254367771|ref|ZP_04983792.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|122325116|sp|Q0BLS9|SYA_FRATO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122500687|sp|Q2A3A9|SYA_FRATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830095|sp|A7NCD9|SYA_FRATF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89144262|emb|CAJ79545.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115129768|gb|ABI82955.1| alanine--tRNA ligase [Francisella tularensis subsp. holarctica OSU18] gi|134253582|gb|EBA52676.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|156253136|gb|ABU61642.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 865 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 378/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + + R + NHSATHLL+ AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|328676860|gb|AEB27730.1| Alanyl-tRNA synthetase [Francisella cf. novicida Fx1] Length = 865 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 380/900 (42%), Positives = 530/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQFKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K I +L + + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTKLIAVLTTTNAD-KV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ + A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|308274548|emb|CBX31147.1| Alanyl-tRNA synthetase [uncultured Desulfobacterium sp.] Length = 875 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 370/906 (40%), Positives = 538/906 (59%), Gaps = 45/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FLE+F+K+ H+++ SSSL+P DPTL+FTN+GMVPFK F G+EK Y Sbjct: 1 MTGSDIRRQFLEYFKKHDHQIVRSSSLVPVEDPTLLFTNAGMVPFKRTFLGEEKRGYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+A++ AWDLL F + Sbjct: 61 ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEKAVEYAWDLLVTGFGIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+++VY +D++A +W K +G+S D+I+R DNFWSM +TGPCGPCSEI D+GE Sbjct: 121 VDKLWVSVYLDDDQAHDIWHKNAGVSEDRIVRFGDKDNFWSMGDTGPCGPCSEILIDRGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P E +RY+EIWNLVFMQFE+ + LP+ SIDTGMGLER+A+V+Q Sbjct: 181 KYGCGKPDCKVGCECDRYLEIWNLVFMQFERDASGKMTPLPRPSIDTGMGLERIASVVQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 NYD DL +I+ +EQ++ + + V +VI DH R+++FLI DGILP+NEGR Sbjct: 241 VPTNYDTDLIIPIIRKTEQLSQKRLGDSSVSDVAMKVIADHSRAAAFLICDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA+ Y R +G +P + + M AYPE A+ I +++E+ R Sbjct: 301 GYVLRRIMRRAIRYGRNIGLVKPFLHETSQVVIETMKDAYPEFEGAEAFISNVIKNEEAR 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD GL LL+ LS + ++GD+ FKLYDT+G P+D+++D++ L +D+ Sbjct: 361 FSETLDNGLRLLNDTLSEIKAKGLNTISGDIIFKLYDTYGFPVDVVRDVVRDENLF-LDM 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN A++ Q+ ++R+ + G + + +L +F+GYD Sbjct: 420 DGFNAAMKNQKEKSRSVATFSGIT---EAYKNLSANRLIPEFVGYD-------------- 462 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V IV+ G+ EAV+G +E+V ++TPFY E+GGQ GD+G Sbjct: 463 ---------KQISDSKVLLIVKDGKETAEAVAGSDIEIVTEETPFYGESGGQTGDSGIIS 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++++I D K A GI +H + G + S+ L++D + R + NH+ATH+LH Sbjct: 514 SSNLKIEIADTIKDAAGIIIHKGKIITGTVSKGQSVTLSVDNKRRSATANNHTATHILHF 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 L ILG HV Q GS ++ + LRFD TH + S L+ IE VN+ I +N M+ Sbjct: 574 ILKRILGDHVKQAGSFVSSERLRFDFTHFSQVDSDTLEKIETLVNERIRENALTCIEEMD 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A SGA AL KY D VRV+S+ G S LCGGTH TG I L I++ESS Sbjct: 634 AEKAFKSGATALFEEKYGDVVRVISL-----GEFSKELCGGTHTDRTGNIGLFKIIAESS 688 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TG A +++ + L A +K + +VE++ + + + Sbjct: 689 VASGVRRIEALTGAAALNYIQQNMKTLNETARIVKEKPEALPQKVEKMLIQQKAYEKELE 748 Query: 776 KRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K ++ D I V ++ + + L+ + D + KI+SGI++L G Sbjct: 749 KTKAKIASRAADDMDNEIKSINGVKVLAKKVLADNPAALRDLADKFRDKIKSGIVVL-GS 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K ++++VT+DL +++A ++ + + V+GGGG GGRP MAQ+GG K D+A+A Sbjct: 808 AAGSKVFLIVIVTKDLAGKYHAGNIVKQVSSVVGGGG-GGRPDMAQAGGSIPEKLDEALA 866 Query: 891 GVASFL 896 G + Sbjct: 867 GAYDII 872 >gi|118497373|ref|YP_898423.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida U112] gi|195536062|ref|ZP_03079069.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] gi|205830097|sp|A0Q604|SYA_FRATN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118423279|gb|ABK89669.1| alanyl-tRNA synthetase [Francisella novicida U112] gi|194372539|gb|EDX27250.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] Length = 865 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 379/900 (42%), Positives = 529/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L+ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ + A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|187931901|ref|YP_001891886.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] gi|205830096|sp|B2SH99|SYA_FRATM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187712810|gb|ACD31107.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] Length = 865 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 378/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E++ F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEKLFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q ++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDDQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + D LRFD TH K I+ +E++ IE VN I N PV T ++++ A Sbjct: 567 VLGGHAEQKGSLVDEDRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIEISQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDINLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|157364647|ref|YP_001471414.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO] gi|205830273|sp|A8F866|SYA_THELT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157315251|gb|ABV34350.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO] Length = 858 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 379/905 (41%), Positives = 549/905 (60%), Gaps = 56/905 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R+ FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V Sbjct: 1 MTGDELRSAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R ND++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L+ Sbjct: 60 TTCQKCLRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKKEAIIWAWEFVTEVLKLE 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + RL+ITVY+EDEE+FK+WK I G+ KIIR+ + NFW TGPCGPCSEI +D G Sbjct: 116 KDRLWITVYEEDEESFKIWKDIVGVCEKKIIRMGKDTNFWGPAGPTGPCGPCSEIHYDTG 175 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G + +R++EIWNLVF +F Q K + LP+ +IDTG GLER+A+V+Q Sbjct: 176 LNEDCSDGECTPANSDKRFLEIWNLVFTEFYQDEKGALYPLPRKNIDTGAGLERVASVVQ 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 + +N++ D+FK +I E V G++Y+ + ++ RVI DH R+ SFLIADG+ P+NE Sbjct: 236 KVESNFETDIFKPIISKIEDVLGVEYKKDEQKDISIRVIADHSRAVSFLIADGVFPSNEE 295 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LLG +P + + + MG+ Y EL K LI E R+E+E Sbjct: 296 RGYVLRRILRRAVRHGVLLGAQKPFLHLINETVIEHMGNTYSELKNRKDLILEVTRAEEE 355 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF KT+ +G +L ++S ++++G+ FKLYDT+G P DI+ D+ L +D+ Sbjct: 356 RFFKTISQGNEMLRDIISR--SSKVIDGEDVFKLYDTYGFPPDIVVDVAKDYNLK-VDLE 412 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++ QR RAR+ + +++I+ L +K T F+GYD L Sbjct: 413 GFEKLMKIQRERARSARNNVEYAKSQEIYDELAQK-SKTVFVGYDTLE------------ 459 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V + + SG K E VFD+T FYAE GGQ+ D G + Sbjct: 460 -----------CEAKVIFLKK---------SGTKYEAVFDKTSFYAERGGQVSDVGQIVW 499 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG + V EGI VH VE+G L+ + L +D + R + NH+ATHLLH A Sbjct: 500 DGGSASVEHVFIPVEGIIVHIINVEKGELKEGTKVRLIVDREKRLSTARNHTATHLLHAA 559 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS +TP+ LRFD TH KP+T EL SIE+ VN+II +++PV+T + Sbjct: 560 LRKVLGTHVKQAGSLVTPEKLRFDFTHHKPLTDNELMSIENMVNEIILRSIPVITEEKSY 619 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+A GA AL G KY D VRVV V S LCGGTHV +TG I L IVSES+I Sbjct: 620 KEAVAEGAIALFGEKYGDVVRVVKVHS-----FSEELCGGTHVKNTGNIGLFRIVSESAI 674 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G RRIEAITG ++L +++ + ++ L SQ ++ ++E + E+ LQ + Sbjct: 675 SSGTRRIEAITGFNTLNYLRVKEQLVGNICEKLGTSQDEILSKIENLIEKNINLQKELQQ 734 Query: 777 RKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K +L V L +I ++ F+ + ++++S EL+++ D S + +L SK+ Sbjct: 735 FKSKLLVSQLKQTPFEQIKNIRFVHCVFNDIESNELRNLSDIAVAGENSTVALLFSTSKD 794 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++++ VT+DL + A D+A+ +A++L GG GGGRP AQ+GG + +K + I Sbjct: 795 -KVNLIVRVTQDLAKKIKAGDIAKYAAQILEGG-GGGRPDFAQAGGKDPSKINSVIEYTR 852 Query: 894 SFLKK 898 L++ Sbjct: 853 KLLEQ 857 >gi|254369401|ref|ZP_04985413.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] gi|157122351|gb|EDO66491.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] Length = 865 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 377/900 (41%), Positives = 530/900 (58%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++II I ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIHIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ G + SL ++F GY L Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E +H + +G L L + + R + NHSATHLL+ AL Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 742 ELLSGSSNDIKETSIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859 >gi|329114349|ref|ZP_08243111.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001] gi|326696425|gb|EGE48104.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001] Length = 898 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 421/886 (47%), Positives = 566/886 (63%), Gaps = 31/886 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IRT FLE+F NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y Sbjct: 18 MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 77 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW+L+TK F+L Sbjct: 78 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 137 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TV+ EDE+A LW+ I+GL +IIRI T+DNFW M +TGPCGPCSEIFFD Sbjct: 138 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 197 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G E+G+R++EIWNLVFMQ+ + R LP+ SIDTG+GLER A ++Q Sbjct: 198 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 257 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D F LIQAS +T +G +HRV+ DHLRS++FLIADG+LP+ +GRGY Sbjct: 258 KRDNYDTDTFVALIQASADLTHQAADGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 317 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G TEP LLPAL +MG AYPEL+ + LI ET+R E+ERF Sbjct: 318 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 377 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL LL+ SHL L GDVAF+LYDT G PLD+ QD L G +D+ F Sbjct: 378 AMLDRGLHLLEEEKSHLASGAPLPGDVAFRLYDTFGFPLDLTQDALRGSGH-DVDVKGFE 436 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR RARA G G E IWF ++K+GA++F+GY Sbjct: 437 DAMSVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGY------------------- 477 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V+A++ ++EA G +V V+ +QTPFY E+GGQ GDTG G+ Sbjct: 478 ----STEQADGEVQAVIAGNAFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 533 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ ITD QKKA + VH+ V G LR M++ T+D+ R + +HSATHLLH AL Sbjct: 534 KVAITDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 593 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS T + LRFDV+ +PIT EL +IE VN+ I +N VVTR M ++A Sbjct: 594 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRENSQVVTRSMTPDEA 653 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 IA GA AL G KY D VRVVS+ S LCGGTHV+ TG+I IVSES + Sbjct: 654 IAEGATALFGEKYGDEVRVVSMGAGADNKAPWSMELCGGTHVNRTGDIGQFRIVSESGVS 713 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+ G+ A+ + +++L +A+ +KVS + R+ + EE R+++ A Sbjct: 714 AGVRRIEAVAGKAAQDLTVSNEQRLTQMATMMKVSVADAPERLAAVLEERRQMEKQIAHL 773 Query: 778 KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + QL +++ KI + + E +ELK + + + K+ + +++L+ + + Sbjct: 774 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 832 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 K SV+ V +++++ +AV L R ++ +GG GGGGR MAQ+GGP Sbjct: 833 KGSVVAAVGPEMVEKVDAVALVRTASAAMGGKGGGGRRDMAQAGGP 878 >gi|15606507|ref|NP_213887.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5] gi|6226165|sp|O67323|SYA_AQUAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2983727|gb|AAC07289.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5] Length = 867 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 359/902 (39%), Positives = 528/902 (58%), Gaps = 48/902 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K + Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N++ID+ LIQ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RRI+RRAM + LG P + + + M YPEL ++ ++ ++ E++RF K Sbjct: 296 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 355 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ + V+ + L+G F YDT+G P+D++ +I +GL GID+ F Sbjct: 356 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 LEEQR RAR + + + ++ LKE + F+GY+ + Sbjct: 415 QCELEEQRERARK-HFKVEAKKVKPVYSHLKELGKTSAFVGYEHMEW------------- 460 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S V +V+ +V E G++ EVV +TPFY E GGQ+GD G D Sbjct: 461 ----------ESQVVGLVKGEGLVSELKEGEEGEVVLKETPFYPEGGGQIGDAGIIESDK 510 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ D QK EGI VH V +G L+ ++ +D + R + NH+ATHLLH AL Sbjct: 511 ALFKVEDTQKPTEGIIVHIGKVLKGTLKVGDTVHARVDKERRWDIMRNHTATHLLHAALR 570 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + LRFD TH +T ELK +E+ VN+ I +NLPV M ++ Sbjct: 571 NVLGEHVRQAGSLVADKYLRFDFTHFSALTEEELKRVEELVNEKIRENLPVNVMEMAYDE 630 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ +GA A+ KY +RVRV+S G S LCGGTHVS+TG+I I+SESS+ A Sbjct: 631 ALKTGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGA 685 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRI A TG+ + + + LK +S L V + V+ ++EE+ EE + + + K Sbjct: 686 GVRRIVAQTGRWSVETAFKEHQTLKKASSALGVGEEEVIQKIEELKEEIKDREREIQRLK 745 Query: 779 LQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + + D + EV+ +EL+++ D L+++ + ++ + + Sbjct: 746 QELLKLQIREVVKEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASRKGD- 804 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K + +I V++++ D+ NA ++ R KVL GGG GGR +AQ GG +K +A+ + Sbjct: 805 KINFVIGVSKEISDKVNAKEVIREVGKVLKGGG-GGRADLAQGGGKAPDKFPEAVKLLKE 863 Query: 895 FL 896 L Sbjct: 864 IL 865 >gi|71275909|ref|ZP_00652192.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon] gi|71899253|ref|ZP_00681415.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1] gi|170729338|ref|YP_001774771.1| alanyl-tRNA synthetase [Xylella fastidiosa M12] gi|205830290|sp|B0U1K9|SYA_XYLFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71163286|gb|EAO13005.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon] gi|71730986|gb|EAO33055.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1] gi|167964131|gb|ACA11141.1| Alanine--tRNA ligase [Xylella fastidiosa M12] Length = 884 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 364/910 (40%), Positives = 537/910 (59%), Gaps = 50/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V Sbjct: 8 TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT ++L Sbjct: 68 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYRTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I G E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + ++T + N + VI DH R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLCVIADHSRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+ +QR ARA G ++ T F+GY+ L+ Sbjct: 424 MAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGL------ 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 475 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +K G F H +G ++ L ++ R+ +++NHSATHLL Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVTRIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++ G+HV+Q GS + PD LRFD +H +PI++A++ IE VND + N V+ Sbjct: 579 HCALRSVFGTHVAQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A+ +GA AL G KY + VRVV + S LCGGTH++ TG+I L I+SE Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVKMG------TSVELCGGTHITRTGDIGLFKIISE 692 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG+ A +H++ ++ +L +A + + +VV + ++ + + L+ Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K +L + + +ADV ++ + +D K L+ +D L+ ++ +I+L Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ K A V V + + A L A + G GGGR AQ GG +G A Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871 Query: 889 IAGVASFLKK 898 + GVA+++K+ Sbjct: 872 LDGVATWVKQ 881 >gi|157273379|gb|ABV27278.1| alanyl-tRNA synthetase [Candidatus Chloracidobacterium thermophilum] Length = 880 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 362/907 (39%), Positives = 518/907 (57%), Gaps = 44/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR FL++F ++GH ++ SS ++P +D TL+FTN+GM FK++FTG+E Y Sbjct: 1 MLTGHDIRRRFLDYFARHGHRIVKSSPVLPPDD-TLLFTNAGMNQFKDVFTGRETREYTR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKC+RAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFKE AI AW+LL +EF L Sbjct: 60 AASSQKCIRAGGKHNDLDEVGKTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLLREFGL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL+ TVY++D+EAF LWKK G AD+I+R +NFW M ETGPCGPCSEI + G Sbjct: 120 PLERLWFTVYEDDDEAFALWKK-VGAPADRILRFGKKENFWQMGETGPCGPCSEIHYFLG 178 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + P + G+ IEIWNLVFMQFE+ LPK S+DTG GLER+A+VLQ Sbjct: 179 DDLADNRPEHVNGPGDTTIEIWNLVFMQFERFADGTLKPLPKPSVDTGAGLERLASVLQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K +NYD DL +++ G Y + V+ R+I DH R+++F IADGI P N GR Sbjct: 239 KKSNYDTDLIFPIVEHIAARAGKPYHYDSPDGVSMRIIADHARATAFSIADGIYPGNTGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 YVLR+IMRRA+ + R LG + + + M +A+PEL +I + +E++ Sbjct: 299 NYVLRKIMRRAIWHGRRLGIENLFLHDITAFVVAHMAAAFPELQTQAEVITRVVTTEEKL 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL G L+ +++G AF LY T+GLPLD++ + + +D Sbjct: 359 FSATLAAGRKRLEEAFRRAE-HGVVSGADAFDLYQTYGLPLDLIA-YIAEQRGLRVDEAG 416 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F AL E+R RAR G + + + + T F GYD L Sbjct: 417 FEAALTEERIRARESWKGGTAKAVAPAYQAALD-GRPTIFRGYDHLSLPDL--------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V+A+++QGE+VE +G+ EV+ D+TPFYAEAGGQ+GDTG + Sbjct: 467 -------------RVRALIRQGELVEVLRAGEDGEVILDETPFYAEAGGQVGDTGLLENE 513 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + +++TD G+ VH V RG +RT + T+D RR+ +NHSATHLLH AL Sbjct: 514 AVTMRVTDTVAPVTGLIVHCVKVLRGAVRTHDRVTATVDADRRRRTMLNHSATHLLHAAL 573 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS + PD LRFD TH +++ E+ +E VN I +N P+ R M + Sbjct: 574 REVLGAHVKQAGSEVAPDKLRFDFTHYAALSADEIAEVERLVNAQIRRNAPLAKREMPLD 633 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 AIA+GA AL G KY D VRVV V S LCGGTHV++TG+I L I+SESSI Sbjct: 634 AAIAAGAIALFGEKYGDVVRVVEVPG-----FSIELCGGTHVTATGDIGLFKIISESSIA 688 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASF--LKVSQGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRI A+TG+ A + L +LA+ L + +VE++ R+ + Sbjct: 689 AGVRRIIAVTGEAAFERFQADEAILSNLAATFRLGGEVSEIPAQVEKLQASLRQAEREIE 748 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 +L+L + I DV ++ ++E+D ++ + + L K+ ++++ G+ Sbjct: 749 SLRLKLAQQRAETALAEARTIGDVRVLALEVTELDKSGVRQLAEYLLGKLGQAVVVV-GL 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E+K S+ + V + L +R A L R A ++ GG GGGR A++GG + + +A+ Sbjct: 808 RSEEKVSLAVRVADPLTNRLQANRLVRELAAMV-GGSGGGRADYAEAGGKDPARLPEALH 866 Query: 891 GVASFLK 897 + ++ Sbjct: 867 ATPAIVE 873 >gi|91204886|ref|YP_537241.1| alanyl-tRNA synthetase [Rickettsia bellii RML369-C] gi|122426110|sp|Q1RKG2|SYA_RICBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91068430|gb|ABE04152.1| Alanyl-tRNA synthetase [Rickettsia bellii RML369-C] Length = 877 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 417/901 (46%), Positives = 564/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR+ F+ +F+ N H + SS LIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEIRSKFISYFKANNHTHVSSSPLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYDKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY TVY D+EA WKKI+G S D+IIRI TNDNFWSM + GPCGPCSEIF+D GE Sbjct: 125 DKLYATVYHTDDEAASYWKKIAGFSDDRIIRIKTNDNFWSMGDLGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ NK R LPK SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQINKDTRIDLPKKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K E ++RVI DHLR+ SFLIADG++P++EGRGYVL Sbjct: 245 NNYDIDLFQEIISFTENILKVKVEAEAKFSYRVIADHLRACSFLIADGVVPSSEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRAM +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRAMRHAHILGSKEPLMYKLLPKLVDLMGNTYPELKRAESFISSILEQEEIRFKTT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL +L L+G+VAFKLYDT+G PLD+ +DIL R +D F Q Sbjct: 365 LERGLKLLSEETENLNAGGRLSGEVAFKLYDTYGFPLDLTEDILKNRN-IAVDHQGFEQQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + EQ+ AR LG G T+++WF +K KYG+T+F+GY+L Sbjct: 424 MLEQKECARKSWLGSGESKTDQLWFDIKAKYGSTEFLGYNL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEADGKIVALIKDNALVNDISEIDTQFLLIANQTPFYGESGGQMGDIGVIKTQNCE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH ++++G + T+ + +ID + R+ L I+HSATHLLH L I Sbjct: 521 IEVIDTLKYLGFIIVHKCVLKKGKVITDENANFSIDVKYRQNLRIHHSATHLLHAVLHQI 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + LRFD++H K +T E+ IED VN+II N V T +M+ EDA+ Sbjct: 581 LGKHVTQKGSLVATSYLRFDISHPKALTPEEIVLIEDKVNEIIRDNHEVDTTLMSTEDAV 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AGI Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRHTGDIGCFKITSESAIAAGI 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + ++ LK++ + LK ++ +V +V I E ++L+ K Sbjct: 696 RRIEAVCGEFVIKLIREKEGLLKNIENSLKTNKNELVSKVNNILERNKELEKELEKTYLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + KI ++ + + +D+K L+ + L KK++ +++ VG + K Sbjct: 756 SLDLSVEQIEKQAEKIKEIKLIYCHVENLDNKILRQAAENLTKKVEDLVVVYVG-NNSSK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + ++ + D+FNA +A+ + LGG GGGG+P +AQ+GG + K + + S Sbjct: 815 LSITVGISRAITDKFNAGFIAKELSLFLGGSGGGGQPSIAQAGGSDLAKLPKVKDQLQSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|270157134|ref|ZP_06185791.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968] gi|289164461|ref|YP_003454599.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150] gi|269989159|gb|EEZ95413.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968] gi|288857634|emb|CBJ11474.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150] Length = 860 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 377/903 (41%), Positives = 535/903 (59%), Gaps = 52/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR F ++F K+GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 1 MKSSEIRQAFFDYFTKHGHQLVESSSLIPANDPTLLFTNAGMVQFKDVFLGVEARSYQRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT+ L Sbjct: 61 VTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTQVMRLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180 + RL++TVY ED+EA +W K +SA + R DNFWSM +TGPCGPC+EIF+D Sbjct: 121 EERLWVTVYKEDQEAEDIWLKEMKVSAARFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E G E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A V+Q Sbjct: 181 EIPGGPPGSPDEDGDRYIEIWNLVFMQFNRDKEGHLHPLPKPSVDTGMGLERLAAVVQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID F++LIQ+ ++ + N+ + +VI DH+RSS+FLIADG++P NEGRGYV Sbjct: 241 HSNYEIDTFQYLIQSIAKLGEVTD--LNLTSLKVIADHIRSSAFLIADGVIPGNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG P HL+ +L T MG AYPELIQ+K IE L E+ +F + Sbjct: 299 LRRIIRRAIRHGNKLGLPTPFFSHLVESLITVMGDAYPELIQSKSHIERVLNQEENQFAR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL LL + LG EI +G +AFKLYDT+G P+D+ DI +GL +D+ FNQ Sbjct: 359 TLEQGLRLLQEQMHSLGGHEI-SGQIAFKLYDTYGFPIDLTADIAREQGLF-VDMNGFNQ 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +++QR +++A S + + + + F GY+ Sbjct: 417 LMQQQREQSQAASQF------SVDYNANTQLDYQSDFHGYEKKE---------------- 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V + + A++Q G V+ G K VV D TPFYAE+GGQ+GD G R Sbjct: 455 -------VEAKIIALLQDGMEVQVLNQGMKGAVVLDHTPFYAESGGQVGDKGMLTSTNFR 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D QKK VH+ + G + + ID + R + +NH+ATHLLH AL + Sbjct: 508 FRVDDTQKKG-QAIVHYGEMLDGTATLKQFVHAQIDNERREAIRLNHTATHLLHAALKAV 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 +G V Q GS + + RFD +H + +T+ +++ IE VN+ + N VVTR+M+ E A Sbjct: 567 VGPQVQQKGSLVDAERARFDFSHFESLTAEQIQEIECLVNEQVRANNEVVTRLMDIESAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL G KY D VRV+S+ G S LCGGTH TG+I L I++E I +GI Sbjct: 627 KSGAVALFGEKYADEVRVLSM-----GEFSKELCGGTHARRTGDIGLFKIIAEYGIASGI 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777 RRIE +TG+ A + + Q L LAS LK + N+ +V ++ E + ++ AK Sbjct: 682 RRIEMVTGRYALAWVNEQQALLNELASSLKTTATNLSDKVGQLLAENKSMEKEIAKLQTE 741 Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 K+Q + DL K+ ++ + + VD++ L++ +D L+ +++S +I+L + + K Sbjct: 742 KVQKSGADLANEVEKVNGISLLIKQLEGVDNQTLRTTLDQLKSRLESAVIVLFTLEQN-K 800 Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +V+ V++ +L + A L R G GGGR MAQ GG + + + Sbjct: 801 MNVIAGVSKSILGKVPAAATLVRHLC-----GKGGGRDDMAQGGGEVPADFESRLKEIKE 855 Query: 895 FLK 897 ++ Sbjct: 856 MVR 858 >gi|310643515|ref|YP_003948273.1| alanyl-tRNA synthetase [Paenibacillus polymyxa SC2] gi|309248465|gb|ADO58032.1| Alanyl-tRNA synthetase [Paenibacillus polymyxa SC2] Length = 877 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 354/911 (38%), Positives = 511/911 (56%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +LEFF+ GH + PS+ L+P DP+L++ N+GM P K F G+ KP + Sbjct: 1 MKASEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RL +TVY EDEEA+KLW + GL A++II++ DNFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173 Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 GE E ERY+E+WNLVF QF LP +IDTG GLER A+ Sbjct: 174 GEAYGSDMTDPEMYPGGENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ +N+D D+F+ LIQ + + G+KY N + V +VI DH+R+ +F I DG+LP+ Sbjct: 234 ILQNVDSNFDTDIFQPLIQKTAAMAGVKYNDNVDSDVALKVIADHVRTVTFAIGDGVLPS 293 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ Y ++LG P M L+ + MG YPE++ + I + +++ Sbjct: 294 NEGRGYVIRRLLRRAVRYGKMLGMNRPFMFELVETVGDIMGVYYPEVVDKRDFIIKVIKT 353 Query: 354 EDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL GL +L + + +++G AFKLYDT+G P D+ +D +GL Sbjct: 354 EEERFHETLTDGLAILADISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK 413 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F++A++EQR RAR S + +L + + F+GY+ L Sbjct: 414 -VDREGFDEAMQEQRQRARDAHQDNASMKIQG--GALSDLAVKSDFVGYNDL-------- 462 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + AIV +VE GQ +VV D TPFYAE+GGQ+ D Sbjct: 463 ---------------VTESKIVAIVYDDMLVESVSEGQSCQVVLDVTPFYAESGGQVSDH 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + ++ + K +G VH +VE G L ++ +D +R ++ NH+ATH Sbjct: 508 GLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN I L V Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLNVTI 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + ++A A GA AL G KY D VRVV V G +S LCGG HVS+T +I L +V Sbjct: 628 ELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKLV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEA+TG+ ++ GQ E LK A +K V R+E + ++ + L Sbjct: 683 SESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDLS 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L+ + + V ++ + L+++ D L+ K+ + ++ Sbjct: 743 RENESLQSKLSAIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKSKLPAAVLA 802 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + + K + ++VV + +A L + A V GGGG GGRP MAQ+GG + +K Sbjct: 803 L-GAAMDDKVNFVVVVPAEHTKTGLHAGKLVKEIAAVCGGGG-GGRPDMAQAGGKDASKL 860 Query: 886 DQAIAGVASFL 896 D+A+ + Sbjct: 861 DEALQRAHELV 871 >gi|308070327|ref|YP_003871932.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus polymyxa E681] gi|305859606|gb|ADM71394.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus polymyxa E681] Length = 877 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 353/911 (38%), Positives = 514/911 (56%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +LEFF+ GH + PS+ L+P DP+L++ N+GM P K F G+ KP + Sbjct: 1 MKASEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RL +TVY EDEEA+KLW + GL A++II++ DNFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173 Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 GE E ERY+E+WNLVF QF LP +IDTG GLER A+ Sbjct: 174 GEAYGSDMTDPEMYPGGENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ +N+D D+F+ LIQ + + G+KY N + V +VI DH+R+ +F I DG+LP+ Sbjct: 234 ILQNVDSNFDTDIFQPLIQKTAAMAGVKYNENVDSDVALKVIADHVRTVAFAIGDGVLPS 293 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ Y ++LG P M L+ + MG YPE++ + I + +++ Sbjct: 294 NEGRGYVIRRLLRRAVRYGKMLGMNRPYMFELVETVGDVMGVYYPEVVDKRDFIIKVIKT 353 Query: 354 EDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL GL +L + + +++G AFKLYDT+G P D+ +D +GL Sbjct: 354 EEERFHETLTDGLAILSDISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK 413 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F++A++EQR RAR S + +L + ++F+GY+ L Sbjct: 414 -VDREGFDEAMQEQRKRARDAHQDSASMKIQG--GALSDLAVKSEFVGYNDL-------- 462 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + AIV + +V+ GQ +VV D TPFYAE+GGQ+ D Sbjct: 463 ---------------VTESKIVAIVYEDVLVDSVSEGQSCQVVLDVTPFYAESGGQVSDH 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G + ++ + K +G VH +VE G L ++ +D +R ++ NH+ATH Sbjct: 508 GLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN I L V Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLDVNI 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + ++A A GA AL G KY D VRVV V G +S LCGG HVS+T +I L +V Sbjct: 628 ELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKLV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEA+TG+ ++ GQ E LK A +K V R+E + ++ + L Sbjct: 683 SESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDLS 742 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L+V + + V ++ + L+++ D L+ K+ + +++ Sbjct: 743 RENESLQSKLSVIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKGKLPAAVLV 802 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + + K + ++ V + +A L + A V GGGG GGRP MAQ+GG + +K Sbjct: 803 L-GAAMDDKVNFVVAVPAEYTKAGLHAGKLVKEIAAVCGGGG-GGRPDMAQAGGKDASKL 860 Query: 886 DQAIAGVASFL 896 D+A+ + Sbjct: 861 DEALQRAHELV 871 >gi|258541879|ref|YP_003187312.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256632957|dbj|BAH98932.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256636014|dbj|BAI01983.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03] gi|256639069|dbj|BAI05031.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07] gi|256642123|dbj|BAI08078.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22] gi|256645178|dbj|BAI11126.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26] gi|256648233|dbj|BAI14174.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32] gi|256651286|dbj|BAI17220.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654277|dbj|BAI20204.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12] Length = 881 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 428/903 (47%), Positives = 575/903 (63%), Gaps = 31/903 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IRT FLE+F NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y Sbjct: 1 MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW+L+TK F+L Sbjct: 61 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TV+ EDE+A LW+ I+GL +IIRI T+DNFW M +TGPCGPCSEIFFD Sbjct: 121 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G E+G+R++EIWNLVFMQ+ + R LP+ SIDTG+GLER A ++Q Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D F LIQAS +T +G +HRV+ DHLRS++FLIADG+LP+ +GRGY Sbjct: 241 KRDNYDTDTFVALIQASADLTHQAVDGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G TEP LLPAL +MG AYPEL+ + LI ET+R E+ERF Sbjct: 301 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL LL+ SHL L GDVAF+LYDT G PLD+ QD L G +D+ F Sbjct: 361 AMLDRGLHLLEEEKSHLASGASLPGDVAFRLYDTFGFPLDLTQDALRGSGH-DVDVKGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ QR RARA G G E IWF ++K+GA++F+GY Sbjct: 420 EAMAVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V+A++ E ++EA G +V V+ +QTPFY E+GGQ GDTG G+ Sbjct: 461 ----STEQADGEVQAVIAGNEFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD QKKA + VH+ V G LR M++ T+D+ R + +HSATHLLH AL Sbjct: 517 KVAVTDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS T + LRFDV+ +PIT EL +IE VN+ I N VVTR M ++A Sbjct: 577 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRDNSQVVTRSMTPDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 IA GA AL G KY D VRVVS+ S LCGGTHV+ TG+I IVSES + Sbjct: 637 IAEGATALFGEKYGDEVRVVSMGAGADNKSPWSMELCGGTHVNRTGDIGQFRIVSESGVS 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+ G+ A+ + +++L +A+ +KVS + R+ + EE R+++ A Sbjct: 697 AGVRRIEAVAGKAAQDLTVSNEQRLTQMAAMMKVSVADAPERLAAVLEERRQMEKQIAHL 756 Query: 778 KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + QL +++ KI + + E +ELK + + + K+ + +++L+ + + Sbjct: 757 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 815 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K SV+ V +++++ +AV L R ++ +GG GGGGR MAQ+GGP+ AD A A V Sbjct: 816 KGSVVAAVGPEMVEKVDAVALVRAASAAMGGKGGGGRRDMAQAGGPDAQAADTAFAAVRE 875 Query: 895 FLK 897 LK Sbjct: 876 ALK 878 >gi|224369825|ref|YP_002603989.1| alanyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2] gi|223692542|gb|ACN15825.1| AlaS1 [Desulfobacterium autotrophicum HRM2] Length = 872 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 372/902 (41%), Positives = 542/902 (60%), Gaps = 45/902 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + R F+E+F+K+ H + SSSL+P +DPTL+FTN+GMV FK +FTG EK Y Sbjct: 1 MTGNEARRLFIEYFEKHHHHHVRSSSLVPSDDPTLLFTNAGMVQFKRVFTGDEKRDYSLA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI+ AWDLLT + D Sbjct: 61 VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGQYFKDKAIEFAWDLLTNGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+++VY +D+EA+ +W+ G+ +I+R+ DNFWSM +TGPCGPCSEI D+GE Sbjct: 121 PEKLWVSVYLDDDEAYNIWRDKIGVPESRIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P E +RY+E+WNLVFMQF++ + LPK SIDTG+GLER+ +VLQ+ Sbjct: 181 KYGCGSPDCAVGCECDRYLELWNLVFMQFDRDATGKMTPLPKPSIDTGLGLERVISVLQD 240 Query: 240 KTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 NY+ DLF +++ E ++ N V +VI DH R+++FLI DGILP+NEGR Sbjct: 241 VPTNYETDLFLPIMERVEVLSGLKKDASRENSVAMKVIADHSRAAAFLICDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRA+ Y R LG P + + + M AYPEL ++ I +++E+ + Sbjct: 301 GYVLRRIMRRAIRYGRNLGLVRPFLHETVQQVFEIMEQAYPELKESSAFILNVVKNEEAK 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD GL LL+ + + + GDV FKLYDT G P+DI+ D++ R + +D+ Sbjct: 361 FSETLDVGLRLLNETIEKTEASGAKQIAGDVIFKLYDTFGFPVDIINDVVADRAIT-LDM 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +N+A+++QR+R+++ + G G + + +L + T+F GY L Sbjct: 420 DGYNRAMDDQRARSKSSKIFAGVG---EAYKTLTSQGVKTEFTGYTDLE----------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +S V IV+ V A G ++E+V TPFYAE+GGQ GD+G Sbjct: 466 ------------TTSEVLLIVKNDVAVTTAGQGDQIEIVTRATPFYAESGGQAGDSGVIK 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G + + + G+ +HH V G L+T+ ++++ +D + R ++NH+ATHLLH Sbjct: 514 TKGCTVAVDNTLADPSGLRIHHGKVVSGALQTKANVLMVVDQEQRAATAMNHTATHLLHA 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q+GS +T D LRFD TH IT E++++E VN I +N+PV T M+ Sbjct: 574 ALRKVLGDHVKQSGSLVTKDRLRFDFTHFAAITRQEIEAVESEVNLRIRENVPVATIEMD 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A+ SGA AL KY DRVRVVS+ S LCGGTH +G I L IVSE Sbjct: 634 MDEAVKSGATALFEEKYGDRVRVVSMAG-----FSKELCGGTHTDRSGNIGLFQIVSEGG 688 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +GIRRIEA+TG RA ++ G + + LK ++G VV +V+ + + + Sbjct: 689 IASGIRRIEALTGARALDYVHGITADILETSRVLKSARGEVVEKVKTLVADKKAADKEIV 748 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K ++ + + +I V +S ++ + +L+ + D + KI SG+++L G Sbjct: 749 SLKAKIASKSVENMDDDIREIDGVRIVSKLVQIDNPSQLRDLADKFKAKIGSGVVLL-GA 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 KA ++ VV++DL RF A + + +A ++GGGG GGRP MAQ+GG ++A+A Sbjct: 808 ESNGKALLVSVVSDDLTKRFKAGAIVKKAAAIVGGGG-GGRPDMAQAGGSKPEFLERALA 866 Query: 891 GV 892 V Sbjct: 867 SV 868 >gi|325290063|ref|YP_004266244.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] gi|324965464|gb|ADY56243.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] Length = 875 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 341/908 (37%), Positives = 520/908 (57%), Gaps = 48/908 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FL FFQ+ GH L S+SLIP NDPTL+ T +GMVPFK F Q +P + Sbjct: 1 MYTGDQLREMFLNFFQEKGHRLQASASLIPKNDPTLLLTVAGMVPFKPYFMRQVEPPFPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR DL+ VG+T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L Sbjct: 61 ATTCQKCVRT----PDLERVGKTARHHTFFEMLGNFSFGDYFKEEAITWAWEYVTEVIKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L+ITV+ ED EA ++W +G+S D++ + +NFW+ GPCGPCSEI+ D G Sbjct: 117 PADQLWITVHPEDHEAREIWINKAGVSPDRL--LDDEENFWAAGPVGPCGPCSEIYVDLG 174 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +R++EIWNLVFMQ+ + LP+ +IDTGMGLER+ +V+Q Sbjct: 175 EARGCGKPDCAIGCDCDRFLEIWNLVFMQYTRDESGTLTPLPRQNIDTGMGLERITSVMQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF +I ++ G+ Y + +VI DH R+ +F++ DGI P+++G Sbjct: 235 GVVSNFDTDLFIPIINKIAEIAGINYKDDPKKDTALKVISDHTRAIAFMLGDGIRPSSDG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ YARL+G +P + + + ++ AYPEL + + I L+ E++ Sbjct: 295 RGYVLRRILRRAVRYARLIGIEKPFLEQIFAVIQSKYAHAYPELKENENFILNHLKLEEK 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL++G +L + L K + +NG AF LY+T+G P+++ ++IL G+ +D Sbjct: 355 NFQATLEQGTQILQDKVESLKKQGLQEINGTDAFHLYETYGFPVELTEEILAEEGIT-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + ++ A EE R A+ S + S + + G T+F+GY L F Sbjct: 414 MENYQLAFEEHRKAAKEQSRQMVSSAENMALINKARELGKTEFVGYRQLSTETF------ 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+ E V A G++V + +TPFYAE+GGQ+ D G Sbjct: 468 -----------------VAALFSGEEEVASAGEGEEVLCLLPRTPFYAESGGQVADKGWI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + Q+ +V+K +G F H + G+L+ + ++V +D + R+ ++ +HS+THLLH Sbjct: 511 RSERAEAQVMEVRKLPDGSFCHRLRITSGVLKVQDTVVAEVDGEIRKSIAAHHSSTHLLH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS ++ + LRFD +H +++ EL ++E+ +N I L V M Sbjct: 571 TALRKVLGQHVQQAGSLVSEERLRFDFSHFSAMSTEELNTVEEEINRQIRGALSVNIAEM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 EDA A GA AL G KY D VRVV + G S+ LCGGTHV +TGEI ++ I+SES Sbjct: 631 CMEDAKAQGAIALFGEKYGDEVRVVRM-----GEFSTELCGGTHVQNTGEIGIVKILSES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+ G++A +++ +E L+ +A LK + G + + ++ + + + Sbjct: 686 GIGAGLRRIEAVAGKQALAYIHSLEESLEEIAVILKAAPGESLKKAGQMAGQLKDAEREI 745 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L+ + +I V ++ + D L+ + D L+ +++ G+I+L G Sbjct: 746 EKLNARLSKYEAENILDKVQEIQGVKVLAAKVQAPDMDALRKMSDTLKDRLKEGVIIL-G 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S E K + VV+ L+ +A + + A GG GGGRP MAQ+GG + +K ++A+ Sbjct: 805 ASAEGKVHFVSVVSPSGLNGLHAGKIIKEVAA-FTGGSGGGRPDMAQAGGKDPSKIEEAL 863 Query: 890 AGVASFLK 897 A V + +K Sbjct: 864 AKVPAIIK 871 >gi|119713374|gb|ABL97437.1| alanine-tRNA ligase [uncultured marine bacterium EB80_69G07] Length = 888 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 408/912 (44%), Positives = 595/912 (65%), Gaps = 44/912 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++ IR+TFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK YQ Sbjct: 4 KSLNEIRSTFLKYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKER I+LAW+L+TK+F LD Sbjct: 64 TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKERGIELAWNLITKDFGLD 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TV+ ED+EAF WKKI+G S D+IIRI+T+DNFWSM ETGPCGPCSEIF+D G+ Sbjct: 124 KNRLYVTVFHEDDEAFNFWKKIAGFSDDRIIRISTSDNFWSMGETGPCGPCSEIFYDHGD 183 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GGLPG+ ++G+R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLER+A +LQ Sbjct: 184 HLKGGLPGTKDQDGDRFIEIWNLVFMQYEQVSKDKRIDLPKPSVDTGMGLERIAALLQGT 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY D FK LI + VT +K NNI + RVI DHLR+SSFL+A+G+LP+NEGRGYV Sbjct: 244 HDNYQTDHFKKLISSISDVTKVKQADNNISSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRR M ++ LLG EP+ + +L EM YPEL ++K LI+ETL+ E+E+F Sbjct: 304 LRRIMRRGMRHSHLLGSKEPIFYKIFESLKNEMSGNYPELERSKSLIKETLKMEEEKFLV 363 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 LDRG+ +L+ +S + D++L+GDVAFKLYDT+G PLD+ +DIL + L +D F++ Sbjct: 364 LLDRGIKILNDEISKI--DKVLSGDVAFKLYDTYGFPLDLTEDILKNKSLK-VDHQKFDE 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +++ + A+ + G G + E IWF +K+K G T+F+GY+ Sbjct: 421 LMKKSKELAKKNWKGSGDSSEEAIWFLIKDKTGPTEFLGYE------------------- 461 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 +N +V +++ + + +G++ ++ +QTPFY E+GGQLGD G + Sbjct: 462 ----SNQSEGVVLNLIKNNQESKSLATGEEGMIITNQTPFYGESGGQLGDKGTIVSGNSV 517 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D QKK +FVH+ V+ G ++ + + ID + R L HSATHLLH +L Sbjct: 518 FEVEDTQKKLGDLFVHYGSVKTGEIKINDVVEMKIDVERRNNLKAYHSATHLLHESLRRT 577 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + PD LRFD +H KPIT+ EL++I+ VN+ + V TRIM + AI Sbjct: 578 LGKHVMQKGSLVAPDRLRFDFSHMKPITNEELETIDKLVNEYVKNGSEVTTRIMTPKAAI 637 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA A G KY + VRVVS+ E S+ LCGGTHV +TG+I +S+SSI AG+ Sbjct: 638 EKGALAFFGEKYGEEVRVVSMGKEKDAYFSTELCGGTHVKNTGDIGKFKTISQSSIAAGV 697 Query: 721 RRIEAITGQRARSHLMGQDEK----LKSLASFLKVSQGNVVG-----RVEE--IWEEYRK 769 RR+EA+ ++ + +++ ++ +K ++ +V+ + E + Sbjct: 698 RRVEALRDKQLEDFIKNKEKLSTLSVQKDEETIKDLSSQIIKLGGKPKVDNKDLKEIIKN 757 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + + ++D ++ KI D+ + ++ K+L+ ++D+ +K++ GI Sbjct: 758 LSKQLEQLNVNSVLQDKTKNIINDQKIKDIKVRFQKVQDLPPKDLRKLVDSGKKELGDGI 817 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +++ S E K + + +TE L+D+++AV A+L ++++GG GGGGR AQ+GG + +K Sbjct: 818 VIVFASS-EDKVGLGVGITEKLVDKYDAVKFAKLGSEIIGGKGGGGRKDFAQAGGQDKDK 876 Query: 885 ADQAIAGVASFL 896 D+A + + + Sbjct: 877 IDEAFEKLKALI 888 >gi|205830249|sp|A5UY81|SYA_ROSS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 905 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 375/932 (40%), Positives = 539/932 (57%), Gaps = 69/932 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + ++IR FL FF++ GH +PSSSLIP NDPTL+FTNSGMV FK+ F G E+ Y Sbjct: 1 MKKLSSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 TTVQKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI +AW+LLTK F Sbjct: 61 TRATTVQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVF 120 Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 +L RL+ TV++ D+EA +LW +G D+++R DNFW MA+TGPCGPC Sbjct: 121 ELPVERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPC 179 Query: 173 SEIFFDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEI G+ + G + + Y+EIWN VFMQFE+ L + S+DTGMGLE Sbjct: 180 SEITIYIGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERS---TMQPLHRPSVDTGMGLE 236 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA V+Q + Y+ DLF LI+ + G + +R + DH R+ +FLIADG Sbjct: 237 RMAMVMQGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADG 296 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +LP N GR YVLRRI+RRA+ R +G+ +P + ++ A+ +MG+ YPEL + I E Sbjct: 297 VLPGNTGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILE 356 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 T+ E+ +F +TL G+ +L+ V+ + ++ GD AF L DT+G PLD+ Q I Sbjct: 357 TVDLEERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAE 416 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D + + +EEQR R R + + E +W + T+F GY Sbjct: 417 HGLT-VDEAGYERRMEEQRDRGRRAAQFKRAAEAE-VWAGI--DLPPTRFTGY------- 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S +V+AIV G+ V EA +GQ+V++ D TPFYAE+GGQ Sbjct: 466 ----------------AAVSGSGVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQ 509 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG IG R+++ DVQ+ G+ VH+ +VE G + + +D R + NH Sbjct: 510 VGDTGVLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNH 569 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + PD LRFD TH++P+T +L IE VN I + Sbjct: 570 TATHLLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADT 629 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------------HS 690 PVV + ++ + AI +GA AL G KY D VR+V++ +G S Sbjct: 630 PVVWQELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCS 689 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGGTHV +GEI L I+SESS+ AG+RRIEA+TG A + + Q L+++A+ + Sbjct: 690 RELCGGTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVG 749 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD 805 Q +V RVE + E ++ Q + ++ +L S + D+ F++ + + Sbjct: 750 APQTQLVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPN 809 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLG 864 + L+ + D L+ K+ SG+++L + + KA +L + T DL R +A +L + A ++ Sbjct: 810 AARLREMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV- 867 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG GGGRP MAQ+GG + K QA+ VA+ + Sbjct: 868 GGSGGGRPDMAQAGGRDSAKIPQALEHVAAVI 899 >gi|148657329|ref|YP_001277534.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1] gi|148569439|gb|ABQ91584.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1] Length = 931 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 375/932 (40%), Positives = 539/932 (57%), Gaps = 69/932 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + ++IR FL FF++ GH +PSSSLIP NDPTL+FTNSGMV FK+ F G E+ Y Sbjct: 27 MKKLSSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPY 86 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 TTVQKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI +AW+LLTK F Sbjct: 87 TRATTVQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVF 146 Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 +L RL+ TV++ D+EA +LW +G D+++R DNFW MA+TGPCGPC Sbjct: 147 ELPVERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPC 205 Query: 173 SEIFFDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEI G+ + G + + Y+EIWN VFMQFE+ L + S+DTGMGLE Sbjct: 206 SEITIYIGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERS---TMQPLHRPSVDTGMGLE 262 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA V+Q + Y+ DLF LI+ + G + +R + DH R+ +FLIADG Sbjct: 263 RMAMVMQGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADG 322 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +LP N GR YVLRRI+RRA+ R +G+ +P + ++ A+ +MG+ YPEL + I E Sbjct: 323 VLPGNTGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILE 382 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 T+ E+ +F +TL G+ +L+ V+ + ++ GD AF L DT+G PLD+ Q I Sbjct: 383 TVDLEERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAE 442 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D + + +EEQR R R + + E +W + T+F GY Sbjct: 443 HGLT-VDEAGYERRMEEQRDRGRRAAQFKRAAEAE-VWAGI--DLPPTRFTGY------- 491 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S +V+AIV G+ V EA +GQ+V++ D TPFYAE+GGQ Sbjct: 492 ----------------AAVSGSGVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQ 535 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG IG R+++ DVQ+ G+ VH+ +VE G + + +D R + NH Sbjct: 536 VGDTGVLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNH 595 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + PD LRFD TH++P+T +L IE VN I + Sbjct: 596 TATHLLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADT 655 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------------HS 690 PVV + ++ + AI +GA AL G KY D VR+V++ +G S Sbjct: 656 PVVWQELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCS 715 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGGTHV +GEI L I+SESS+ AG+RRIEA+TG A + + Q L+++A+ + Sbjct: 716 RELCGGTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVG 775 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD 805 Q +V RVE + E ++ Q + ++ +L S + D+ F++ + + Sbjct: 776 APQTQLVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPN 835 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLG 864 + L+ + D L+ K+ SG+++L + + KA +L + T DL R +A +L + A ++ Sbjct: 836 AARLREMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV- 893 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG GGGRP MAQ+GG + K QA+ VA+ + Sbjct: 894 GGSGGGRPDMAQAGGRDSAKIPQALEHVAAVI 925 >gi|225181972|ref|ZP_03735405.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] gi|225167334|gb|EEG76152.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] Length = 872 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 359/906 (39%), Positives = 520/906 (57%), Gaps = 48/906 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+TFLEFF+ H +LPS SLIP NDPTL+ +GM P K FTG++ P V Sbjct: 1 MKSKEIRSTFLEFFKGKEHLVLPSFSLIPQNDPTLLMVGAGMAPLKPYFTGEKTPPKPRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR D++ VGRT+RH TFFEMLGNFSFG YFKE AI AW+L+T + L Sbjct: 61 ATCQKCVRT----PDIERVGRTSRHATFFEMLGNFSFGDYFKEEAILWAWELVTTGYKLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY++VY +D+EA+ +W K G++ ++I R+ DNFW + + GPCGPCSEI++D G Sbjct: 117 EDKLYVSVYLDDDEAYDIWHKKVGIAPERIFRLGKEDNFWEIGQ-GPCGPCSEIYYDLGA 175 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E+WNLVF QF E L + +IDTG GLER+A VLQ Sbjct: 176 DRGCGRPNCEVGCDCDRFLEVWNLVFTQFNCTESGEYVPLTQKNIDTGAGLERLAVVLQG 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID + L+ +VT +Y + + R+I +HLR SF++ DGILP NEGR Sbjct: 236 VNNLFEIDTVRPLLDHFSKVTKTEYGKDQEKDTSLRIITEHLRGISFMVGDGILPGNEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + ++LG EP + + + + E G YPEL + + I++ +R E+ER Sbjct: 296 GYVLRRLLRRAVRHGKILGVGEPFLHNAVNLVVDEYGEFYPELAKGREYIQKVVRLEEER 355 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TL++G+ +LD ++ G +L GD AFKLYDT+G P+D+ ++IL +D Sbjct: 356 FHETLEQGMKILDELMHKAGPRGVLPGDAAFKLYDTYGFPIDLTKEILAE-NKLILDEEG 414 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 + +ALE QR RAR+ G + + SL++ T+F GYD L Sbjct: 415 YQEALEAQRERARSARGASVFGKDDTDYESLRQL--TTEFTGYDSLE------------- 459 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V AI++ G+ G + EVV TPFY E GGQ GDTG I D Sbjct: 460 ----------AEGEVLAILKDGQPASAVSEGDEAEVVLSVTPFYGERGGQAGDTGIIITD 509 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G +++TD +H +++G + + + R + NH+ATHL+H AL Sbjct: 510 GGTMEVTDTVMTPFEQVIHRGSIKQGTVSVGDAAKGKVFAPGRSSICRNHTATHLIHTAL 569 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS +TPD LRFD T+ T +L +E VN+ I N PV + + + Sbjct: 570 QEVLGEHVKQAGSLVTPDRLRFDFTNLSAATPEQLAEVEQKVNEKIWANEPVSVTLASLD 629 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL KY D VR+V V G +S LCGGTHV S GEI LL IVSE+ I Sbjct: 630 EAKDMGATALFDEKYGDAVRIVRV-----GDYSMELCGGTHVQSAGEIGLLKIVSEAGIG 684 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG A +++ L+ A+ LK S + R+ + E++ LQ + + Sbjct: 685 AGMRRIEALTGAAAYRWFAQRNQLLEQCAAQLKSSPEQLPERISGLQAEFKDLQREYQRL 744 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 +L+L ++ + + V +S +S + + L+ + D L+ K+ SGII+L G + Sbjct: 745 QLKLAGMEVDGLLSEVSQKSGVPVLSARVSAGNMETLREMADRLKNKLGSGIIIL-GAAA 803 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K ++ VT DL+ ++A L AK+ GGGG GGRP MAQ+GG + +K + A+ Sbjct: 804 EGKVLLVGAVTNDLVKAGYHAGKLVGEVAKLTGGGG-GGRPDMAQAGGKDPDKLESALEK 862 Query: 892 VASFLK 897 V S ++ Sbjct: 863 VDSLVE 868 >gi|326204671|ref|ZP_08194527.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782] gi|325985238|gb|EGD46078.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782] Length = 879 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 338/906 (37%), Positives = 535/906 (59%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH L S+ L+P NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERYLKFFESKGHLRLASAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH T+FEMLGNFSFG YFK AI AW+ +T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTEDLKMPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++T+Y++D+EAF +W K+ GL A++I+R+ DNFW TGPCGPCSEI+FD+G Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-TGPCGPCSEIYFDRGPEK 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+E WN VF QF + + L +IDTGMGLER+A + Q+ Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNRDEQGNYTRLTHPNIDTGMGLERLACISQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D +++ + G++Y+ + V+ RVI DH+RS++ ++ DG+LP+NEGRGY Sbjct: 241 NLFEVDTVWNILDYICKTAGVEYKKSEKTDVSIRVITDHIRSTTMMVCDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG +P + + + E AYPEL + I++ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKAGYIKKVIKIEEERFE 360 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T+D+G+V+L+ + K E++ G++ FKL+DT+G PLD+ ++I GL GID Sbjct: 361 ATVDQGIVILNDFIDEIKAKKQEVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEDG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + ++ QR +AR + F +K T F+GY+ + Sbjct: 420 FKKEMDAQRKKARDAHNSKDTSAWSDSVFDKLDKSQKTAFVGYENI-------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S++ IV+ GEIV+ A G ++ V+ D+TPFYAE GGQ+GD+G I Sbjct: 466 ---------VCESVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDSGALIAK 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++I + K A+G F+H VE G++ T ++ +ID + R ++ NH+ THLLH AL Sbjct: 517 NGVIKIENCTKTADGKFLHTGFVETGLVETGSTVTASIDEKRRTAINRNHTVTHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG HV Q GS + P+ LRFD +H +T ELK +ED N+ I ++ V + M + Sbjct: 577 RTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDMTNEAILNSMEVDVKEMPID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY + VRVV VE +S LCGGTH+ +T + L+ I+ ES + Sbjct: 637 EAKKLGAMALFGEKYGNTVRVVKVE-----DYSVELCGGTHLKNTAQAGLVKILGESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RR+EA+TG+ A + ++ L ++ LK + + + +VE + +E + + + Sbjct: 692 AGVRRLEALTGEAAIRYYTERENLLNEVSQALKATPQDSLKKVESLGQELKNAEKEIEQL 751 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L + + ++ V + +D + L++ D L+ K+ SG+I+L Sbjct: 752 RNKLVSGESESVLANAVEVKGVKVVMARFDTMDMEGLRNTGDMLKNKLGSGVIVLGSGYG 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K S ++ T+D++ + ++ ++ + AK GGGG GGRP MAQ+GG + +K D+A+ Sbjct: 812 D-KVSFVVTATKDVVAKGIHSGNIIKEVAKTAGGGG-GGRPDMAQAGGKDLSKIDEALKS 869 Query: 892 VASFLK 897 S ++ Sbjct: 870 AVSIVE 875 >gi|220929512|ref|YP_002506421.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10] gi|219999840|gb|ACL76441.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10] Length = 879 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 339/906 (37%), Positives = 539/906 (59%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS+ L+P NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERYLKFFESKGHLRLPSAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH T+FEMLGNFSFG YFK AI AW+ +TK+ ++ Sbjct: 66 CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTKDLEMPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++T+Y++D+EAF +W K+ GL A++I+R+ DNFW GPCGPCSEI+FD+G Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-IGPCGPCSEIYFDRGPEK 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+E WN VF QF + + L +IDTGMGLER+A + Q+ Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNKDEQGNYTRLAHPNIDTGMGLERLACISQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D ++++ + G++Y+ + V+ RV+ DH+RS++ ++ DG+LP+NEGRGY Sbjct: 241 NLFEVDTVWNILEFICKTAGVEYKKSEKTDVSIRVVTDHIRSTTMMVCDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG +P + + + E AYPEL + I++ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKADYIKKVIKIEEERFE 360 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T+D+G+++L+ + K ++ G++ FKL+DT+G PLD+ ++I GL GID Sbjct: 361 ATVDQGIIILNEFIDEIKAEKQNVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + ++ QR +AR + + +K T F+GY+ Sbjct: 420 FKREMDAQRKKARDAHNSKDTSAWSDSVYDKLDKSQKTAFVGYENTASD----------- 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S++ IV+ GEIV+ A G ++ V+ D+TPFYAE GGQ+GDTG Sbjct: 469 ------------SVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDTGILTAQ 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +++I + K A+G F+H VE GI+ T ++ +ID + R ++ NH+ THLLH AL Sbjct: 517 NGKVKIENCTKTADGKFLHTGFVETGIVETGSTITASIDEKRRIAINRNHTVTHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG HV Q GS + P+ LRFD +H +T ELK +ED N++I ++ V + M+ + Sbjct: 577 RTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDITNEVILSSMNVNIKEMSID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY + VRVV VE +S LCGGTH+++T + L+ I+ ES + Sbjct: 637 EAKKLGALALFGEKYGNTVRVVKVE-----DYSIELCGGTHLNNTAQAGLVKILGESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RR+EA+TG+ A + ++ L +A LK + + + +VE + +E + + + Sbjct: 692 AGVRRLEALTGEAAIRYYTDRENLLNEVAQALKAAPQDSLKKVESLGQELKNAEKEIEQL 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L + +I V ++ +D + L++ D L+ K+ SG+++L Sbjct: 752 RNKLVSGEAESVLANAVEIKGVKVVTARFDTMDMEGLRNTGDMLKNKLGSGVVVLGSGYG 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K S ++ T+D++ + ++ ++ + AK GGGG GGRP MAQ+GG + +K D+A+ Sbjct: 812 E-KVSFIVTATKDVVAKGIHSGNIIKEVAKTAGGGG-GGRPDMAQAGGKDLSKIDEALKT 869 Query: 892 VASFLK 897 AS ++ Sbjct: 870 AASIVE 875 >gi|332160302|ref|YP_004296879.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664532|gb|ADZ41176.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 838 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 374/875 (42%), Positives = 529/875 (60%), Gaps = 56/875 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AI AW+LLT + F+L + +L++TVY+ D+EA+++W G+ ++IIRI Sbjct: 61 SFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFM Sbjct: 121 GDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A +VTG Sbjct: 181 QFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD-- 238 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 239 LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MG A EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L + L+G+ Sbjct: 299 APLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT-GDTLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR S + Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------SSGFGADYN 410 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 +L A+QF GYD + + V A+ + GE V+E Sbjct: 411 NLIRVDSASQFSGYDHV-----------------------HQQATVTALFRNGEAVDEIH 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 G++ VV +QTPFY E+GGQ+GDTG + D QK H + G LR Sbjct: 448 EGEEAVVVLNQTPFYGESGGQVGDTGELKNATATFAVADTQKYG-QAIGHLGQLAHGTLR 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 S+ ID R ++ +NHSATHLLH AL LG HV+Q GS + LRFD +H + Sbjct: 507 VNHSIDAQIDAARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + +++ +ED VN+ I +N+PV T +M + A GA AL G KY+D+VRV+++ Sbjct: 567 MKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVRVLTM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGG H S TG+I L I+SES AGIRRIEA+TG+ A + L Q + L+ +A Sbjct: 622 GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII 801 +K N+ +V + + + L+ + K Q ++ + + V + + Sbjct: 682 HLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQL 741 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 V+ K L++++D L+ ++ S II+L I+ + K S+++ VT+DL + A +L A+ Sbjct: 742 DNVEPKMLRTMVDDLKNQLGSAIIVLATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQ 800 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + GG GGGRP MAQ+GG N A+A V +++ Sbjct: 801 QV-GGKGGGRPDMAQAGGTNVQALPSALASVEAWV 834 >gi|284048255|ref|YP_003398594.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] gi|283952476|gb|ADB47279.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] Length = 875 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 333/913 (36%), Positives = 511/913 (55%), Gaps = 58/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF++ GH +LPS+SLIP +DPTL+ +GM PFK FTG+ KP Sbjct: 1 MKYLSGNEIRQKYLDFFKERGHLVLPSASLIPHDDPTLLLIGAGMAPFKPYFTGKVKPPA 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +TT QKCVR G D++NVGRT RHHT+FEMLGNFSFG YFK+ I AW+ LTK Sbjct: 61 TRITTCQKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L +L+ITVY +D+EA+ LW + G+ A++I+++ DN+W + GPCGP SEI D Sbjct: 117 ELPADKLWITVYPKDQEAYDLWHDVCGVPAERIVKL--EDNWWEITSGGPCGPDSEIHID 174 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 GE G P + R++E+WNLVF Q+ ++ L +IDTG+GLER+A+V Sbjct: 175 LGEERGCGSPDCGPGCDCGRFLELWNLVFTQYNKEPDGSYTPLQHKNIDTGLGLERVASV 234 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ K +N++ DL +I+ + +V+G Y + V+ +VI DH RS +F+I DGILP+N Sbjct: 235 LQNKPSNFETDLIFPIIEYACRVSGKTYNADPKDDVSLKVIADHARSVTFMIGDGILPSN 294 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGY+LRR++RRA+ + RLLG + ++ + G Y +L + K IE+ + E Sbjct: 295 EGRGYILRRVLRRAIRHGRLLGIRKEFLVGAADLVIDMYGDHYTDLREKKSYIEKVIAME 354 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL++G LL+ + + K +LNG+ AF+LYDT G P ++ ++IL +G Sbjct: 355 ENSFLQTLEQGTDLLNQKIDAMRKAGSTVLNGEDAFQLYDTFGFPWELTEEILEEQGFT- 413 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR RAR+ + K + + Sbjct: 414 MDKEGFEKAMEAQRERARSARND----------------------------KEGKPVLYE 445 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + L + V AI + ++ A SG ++ V+ T F+AE GGQLGD Sbjct: 446 TRHLKLGTLTVDEASKNGKVAAIFPAHDTQPIQNAKSGDELAVILTNTAFHAEGGGQLGD 505 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG + D +TD +K +G + +E+G L + ++ + R ++ NH+AT Sbjct: 506 TGRLVSDKGIFNVTDTKKLPDGYTIQLGTLEQGTLSVGDEVEFEVNLKRRADIARNHTAT 565 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LGSHV+Q GS + PD LRFD +H P+T EL +ED VN+ I + V Sbjct: 566 HLLHAALKQVLGSHVNQAGSYVGPDRLRFDFSHFSPLTEEELAQVEDIVNEKILDAVDVE 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 E A GA AL G KY VRVV+V +S LCGG HVS+T I L I Sbjct: 626 ISQQELEKAREMGAMALFGEKYGKIVRVVNVPG-----YSMELCGGVHVSNTSHIGLFKI 680 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SESS+ AG+RRIEA+TG+ A ++ + + A+ +K N+V R+ + E+ R Sbjct: 681 LSESSVGAGVRRIEAVTGRGALAYTRELENLIGEAATAVKGRPNNLVTRISALQEDLRAE 740 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + + +L + + V F++ + D L+ + D L+ K G++ Sbjct: 741 KHRADEMEKKLVAAQAASVTADAKDVKGVAFLAQEVKVQDVDALRKMGDTLRDKTG-GVV 799 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L K ++L++ +++ + + +A +A+ A+ + GG GGGRP MAQ+GG + +K Sbjct: 800 VLAAPMSADKVNILVMASKEAVKKGIHAGKIAKAVAQTM-GGNGGGRPDMAQAGGKDASK 858 Query: 885 ADQAIAGVASFLK 897 + +A ++ Sbjct: 859 VQEGLARALELVE 871 >gi|221066868|ref|ZP_03542973.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1] gi|220711891|gb|EED67259.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1] Length = 874 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 371/909 (40%), Positives = 531/909 (58%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+F+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+ W+LLTK F L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 +L TVY ED+EA+ +WK + GL A++IIRI +DNFW MA+TGPCGPCSEI Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+A+ + T + + + +VI DH+R++SFL++DG++P+N Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRETHTED--LSTPSLKVIADHIRATSFLVSDGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I L++E Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQQAHITSVLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A++ Q+ ARA K+ +L+ F+GYD L Sbjct: 422 EAGFNAAMQHQKETARAAGKF-------KMDRALEYTGQGNTFVGYDKL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ + A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 464 ------------AESAKIVALYADGVSVSELKAGQNGVVVLDTTPFYAESGGQVGDQGVI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R + D K +F HH ++E G L+ ++ +D R NHS TH++H Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+ +++ IE VN + N P R+M Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTPTDARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L +V ES Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIE ITG+ A ++L + + A+ K + R+ ++ + L+ Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPAAELTNRIGGALDQIKALEKEI 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + V ++ + D+K L+ MD L+ K+ + +I+L Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT+ + A +L A+ +GG G GG+P MA +GG + A+ Sbjct: 806 VDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDAAAVPAAL 863 Query: 890 AGVASFLKK 898 A V +++ + Sbjct: 864 ASVQAWVAE 872 >gi|332041455|gb|EGI77817.1| alanyl-tRNA synthetase [Hylemonella gracilis ATCC 19624] Length = 888 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 363/923 (39%), Positives = 524/923 (56%), Gaps = 70/923 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 7 SVADIRKTFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++ AW+LLT + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRIT-------TNDNFWSMAET 166 +LY TVY ED+EA+ +W+ I +G + + +IIRI +DNFW MA+T Sbjct: 127 DKLYATVYLEDDEAYGIWEDIFVKAGWTPERIRQENRIIRIGDNKGGRYKSDNFWMMADT 186 Query: 167 GPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 GPCGPCSEIF+D G I GG P E+G+R+IEIWN VFMQFE LP +D Sbjct: 187 GPCGPCSEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFEMHEDGTVTPLPAPCVD 246 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285 TGMGLER+A +LQ +NY+IDLF LI+A+ + G + + + RVI DH+R+++FL Sbjct: 247 TGMGLERLAAILQHVHSNYEIDLFDALIKAAAREVGTQD--LSNPSLRVIADHIRATAFL 304 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ++DG++P+NEGRGYV RRI+RRA+ + LG P L+ L MG AYP L + + Sbjct: 305 VSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVGELVRLMGDAYPRLKEQQQ 364 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 I E L++E+ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ Sbjct: 365 RITEVLKAEEERFYETLANGMEILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVC 422 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +D F A+++Q+++ARA K+ +L F+GY+ L Sbjct: 423 RERGVT-VDEAGFKSAMDKQKNQARAAGKF-------KMDKALDYTGAGNVFVGYEKLE- 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ + A+ G + SGQ VV D TPFYAE+G Sbjct: 474 ----------------------AAAKIVALYVDGTPTAQLKSGQDGVVVLDTTPFYAESG 511 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + R ++ D QK + HH + G L ++ ++ R Sbjct: 512 GQVGDEGLIVAGPARFEVADTQKIKADVHGHHGTLAAGTLNVGDTVTAQVNLSRRAATMR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHS THL+H AL +LG+HV Q GS + D RFD TH+ P+T A++ IE VN+ I Sbjct: 572 NHSVTHLMHKALHEVLGAHVQQKGSLVDADKTRFDFTHNAPVTPAQIAEIERRVNEEILA 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N R+++ E A A+GA L G KY D VRV+ + S CGGTHV TG+I Sbjct: 632 NSATQARVLDIEAAKATGAVMLFGEKYGDTVRVLDIG------TSREFCGGTHVPRTGDI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L IV ES + AGIRR+EA+TG A +L + + A LK + GR+ ++ + Sbjct: 686 GLFKIVGESGVAAGIRRVEAVTGANALGYLQTLESTVHQAAGALKAPAAELQGRITQVLD 745 Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIAD-----VNFMSHIISEVDSKELKSVMDA 815 + + L+ A K +L ++ + ++ + D+K L+ +D Sbjct: 746 QVKALEKEIAALKGKLASSQGDELMAQAVEVKGRDGVALRVLAATLQGADAKVLRETLDK 805 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 L+ K+++ I+L + + K + VT D + + A +L A+ +GG G GG+P MA Sbjct: 806 LKDKLKTAAIVLATV-EGGKVQIAAGVTADSVGKIKAGELVNFVAQQVGGKG-GGKPDMA 863 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 +GG + + +A+ V ++ + Sbjct: 864 MAGGTDASGLPKALQAVQGWVAE 886 >gi|304316715|ref|YP_003851860.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778217|gb|ADL68776.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 879 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 358/906 (39%), Positives = 550/906 (60%), Gaps = 50/906 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF+ GH LPS SL+P ND +L+ N+GM P K FTG+E P + VTT Sbjct: 7 NEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPRKRVTTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +TK +L + R Sbjct: 67 QKCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPEDR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++T+Y+ D+EA+ +W K+ GL ++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 123 LWVTIYENDDEAYDIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181 Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R+IE WNLVF QF++ ++ LPK +IDTGMGLERMAT++Q + Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFDKDSEGNYNSLPKPNIDTGMGLERMATIMQGVDS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D+ + + ++ G+KY + N V+ RVI DH+R +F+I+DGILP+NEGRGYV Sbjct: 242 IFDVDVIRGITDYVGEMAGVKYGDDKKNDVSLRVITDHIRGVTFMISDGILPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA Y +LLG +P + +++ + AYPELI+ K I++ ++ E+ERF + Sbjct: 302 LRRILRRAARYGKLLGLDKPFLHNVVDVVVEHYSGAYPELIERKDYIKKVIKKEEERFKE 361 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +LD ++ L + +L G+ AFKLYDT+G P+++ ++IL G+ +D + + Sbjct: 362 TIDQGLGILDEYINDLRSEGKTVLEGNKAFKLYDTYGFPIELTKEILNESGMT-VDEVEY 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + LE+QR RAR+ + + I+ +LK+ T+F+GYD ++ Sbjct: 421 QKELEKQRLRARSSRKEDNALWEKDIYSTLKDI--ETKFVGYDSVKSD------------ 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + V AI++ E+V+ A +G++V V+ D TPFYAE+GGQ+GD G + Sbjct: 467 -----------AKVLAIIKDNELVDSAEAGEEVNVILDMTPFYAESGGQVGDKGVIKNED 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + I D +K FVH VERGIL ++ ID +NR + NH+ATHLLH AL Sbjct: 516 VFVNIKDCKKAGGNKFVHIGTVERGILSVGDTVEALIDEKNRLSTARNHTATHLLHSALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +G HV Q GS +TP+ LRFD TH + +T E+K+IE+ VN+ I +N+ V IM+ ++ Sbjct: 576 KFIGDHVHQAGSLVTPERLRFDFTHYQALTDEEIKTIENEVNEKIYENIDVSVDIMSHDE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA AL KY D VRVV+V +S LCGGTHV +TG I + I+SES + A Sbjct: 636 ALKKGAMALFQEKYGDVVRVVNV-----SDYSKELCGGTHVDNTGNIGVFKIISESGVAA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA+TG A ++ ++E + ++ LKV++ ++V RV + + + + + K Sbjct: 691 GIRRIEAVTGINAVKYMNEKEEIIANIGQILKVNEKDIVNRVTGMSQTIKDYEKQIEQLK 750 Query: 779 LQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++ V F+S ++++ D ELK + D L+ K++S +++ + Sbjct: 751 SKIVSSTSERLINLAVDFNGVKFISAVLNDFDVDELKMMGDILKDKLKSAVLV-FATIRN 809 Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K + + + T+D++ N + + + + GG GGGRP MAQ G N +K + A+ Sbjct: 810 GKINFVGMATKDVVKFGINVGTIIKEVCQ-IAGGKGGGRPDMAQGVGNNLDKVNDALNAS 868 Query: 893 ASFLKK 898 + + Sbjct: 869 KMLVME 874 >gi|197301771|ref|ZP_03166841.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC 29176] gi|197299211|gb|EDY33741.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC 29176] Length = 879 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 351/907 (38%), Positives = 505/907 (55%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH ++ S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLVMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY+ED+EAF +W K G+ A++I R DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYEEDDEAFDIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG E +RY+EIWN VF QF L + +IDTGMGLER+A ++Q+ Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L +++G +Y + V+ RV+ DH+RS +F+I+DGILP+N GRGY Sbjct: 241 SMFDIDTMKALRDHVCRLSGKQYGTDHETDVSLRVVTDHVRSVTFMISDGILPSNSGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG ++ L + YPEL + K I + E+ F Sbjct: 301 VLRRLLRRACRHGKLLGIEGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + K +++L+G+ AF+LYDT+G P+D+ +IL +GL D Sbjct: 361 KTIDQGLAILADMEAEMEKKGEKVLSGENAFRLYDTYGFPIDLTSEILEEKGLT-YDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A EEQR+++ E + + T+F+GYD L Sbjct: 420 FKKAQEEQRAKSEGTFGTHSYTGKEVSVYDELDAEIGTEFVGYDHL-------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V A+ + EIV+ G+K ++ +QTPFYA GGQ D G Sbjct: 466 ---------TFDSKVSALTTEDEIVDALSDGEKGTIIVEQTPFYATMGGQEADKGVIRTA 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + D A H V +G+++ ++ L ++ +NR NHSATHLL AL Sbjct: 517 EGEFVVEDCIHLAGTKVGHIGHVTKGMIKIGDTVTLEVNAKNRALTERNHSATHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LGSHV Q GS + D LRFD TH +T ELK +E+ VN+ I L VVT+ + E Sbjct: 577 RTVLGSHVEQAGSFVNEDRLRFDFTHFSAVTPEELKKVEEIVNEQIQNALEVVTKNLPIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV + S CGGTHV +T EIM L I+SES + Sbjct: 637 EARKTGAQALFGEKYGDVVRVVDMGG-----FSVEFCGGTHVKNTSEIMALKIISESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + LK A +K S N+ ++ + E + L+ Sbjct: 692 AGVRRIEALTSDGLMKYYAEMEHLLKEAAQLIKASPENLAEKITHLQAENKALKGEVDSL 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ E ++ V ++ + VD EL+ + D ++K+ G+++L Sbjct: 752 KSKMAQEAAGNVLDRVKEVKGVKLLAAQLDGVDMNELRELGDQFKEKLGEGVVVLASG-N 810 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K S++ VT + +A +L + A ++GGGG GGRP+MAQ+GG N QA+ Sbjct: 811 EGKVSLMATVTNGAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGIAQALEK 869 Query: 892 VASFLKK 898 L + Sbjct: 870 AEEVLAE 876 >gi|254524059|ref|ZP_05136114.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14] gi|219721650|gb|EED40175.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14] Length = 882 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 381/892 (42%), Positives = 532/892 (59%), Gaps = 49/892 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG P E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++TG + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+P L +MG AYPEL A + L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAMDTVTRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + ++ G AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I F+ A+E+QR ARA G + L T F+GYD L+ Sbjct: 424 IAGFDAAMEQQRETARAAGKF---GGGVTLPAELVATLSPTVFLGYDRLQADGLS----- 475 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++ G V+ A +G V V+ +QTPFYAE+GGQ+GDTG Sbjct: 476 -----------------VLALLKDGRPVQSADAGDSVIVITNQTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G+RL + D QK A H + G L+ L +D + R +NHSATHLLH Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGTLSEGGLKIGDVLSGQVDGERRGATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI++ EL IE VN + N M Sbjct: 579 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHTM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 639 AMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A H+ ++ +L A L S +VV ++ + + ++L+ Sbjct: 694 GVSAGVRRIEAVTGQGALDHVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLEREL 753 Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K ++ ++A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 754 EAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ KA+++ V + A +L A +GG G GGRP +AQ GG + Sbjct: 814 A-QDGKAALVAGVNGSATGKVKAGELLSHIAGQIGGKG-GGRPDLAQGGGED 863 >gi|220906096|ref|YP_002481407.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425] gi|219862707|gb|ACL43046.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425] Length = 889 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 343/909 (37%), Positives = 514/909 (56%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH++LPS+SL+P DPT++ T +GM+PFK IF GQ++ Sbjct: 16 MSGAEIRQRFLDFFAARGHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQEAEVPRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR +ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T+ + L Sbjct: 75 TTSQKCVR----NNDIENVGRTARHHTFFEMLGNFSFGDYFKPDAIAWAWELVTEVYHLP 130 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL ++V+ +D+EAF++W + GL +I R+ + NFW+ TGPCGPCSEI+FD Sbjct: 131 ADRLVVSVFQDDDEAFEIWNQKIGLPPQRIRRMGEDSNFWAAGPTGPCGPCSEIYFDFHP 190 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G ++ R++E++NLVFMQ+ + + L +IDTGMGLERMA VLQ Sbjct: 191 E-RGEQNIDLDDDSRFLELYNLVFMQYNRDAEGNLSPLKNKNIDTGMGLERMAQVLQGVP 249 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRG 298 NNY+ DL +IQ + ++ + Y + + +VI DHLR+ +IADGI +N GRG Sbjct: 250 NNYETDLIFPIIQKAAEIADLDYSKSTDSTKISLKVIGDHLRAVMHMIADGITASNVGRG 309 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RR + + RL+G +P ++ +AYP + I+ L+ E+E F Sbjct: 310 YVLRRLIRRIVRHGRLIGIDKPFTAEVVETAIELAEAAYPNVRLKGDSIKAELQREEESF 369 Query: 359 GKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 KTLDRG LL ++S + ++G AF LYDT+G PL++ Q+I +GL +D+ Sbjct: 370 LKTLDRGEKLLADIISRVQSKPGKQQISGQDAFTLYDTYGFPLELTQEIAAEQGLT-VDL 428 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR RAR + T + L E T+F+GY Sbjct: 429 EGFEAEMEQQRQRARDAHETIDL-TVQGTLDKLAEHIHTTEFLGYSQFSSP--------- 478 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 SIV A++ +G+ V +G V++V DQTPFYAE+GGQ+GD G Sbjct: 479 --------------SIVTALLVEGQTVTTVEAGTTVQIVLDQTPFYAESGGQIGDRGYLS 524 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 GD + ++I DV +K GIF+H+ VERG ++ + ID RR++ +H+ATHLL Sbjct: 525 GDTLLVRIEDV-QKESGIFIHYGRVERGSVQVNDRVTAQIDLSCRRRVQAHHTATHLLQS 583 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ ++SQ GS ++ D LRFD +P+T+AEL++IED +N IA+ P T ++ Sbjct: 584 ALKKLVDDNISQAGSLVSFDRLRFDFNCPRPVTAAELQAIEDQINTWIAEAHPAQTSVLP 643 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A A GA A+ G KY VRV+ V S LCGGTHVS+T EI L I++E+ Sbjct: 644 IAEAKAKGAIAMFGEKYGSEVRVLDVAG-----VSMELCGGTHVSNTAEIGLFKIIAETG 698 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +GIRRIEA+ G +L ++ ++ L+ KV V RV + E + Q A Sbjct: 699 VASGIRRIEAVAGPAVLEYLNLRERVVRDLSDRFKVKPEEVPDRVTALQTELKTTQKQLA 758 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L + I + + VD++ LK+ + L +K+ G ++L + Sbjct: 759 ELKNELALAKSDSLLAQVEAIGSFKVLVAQLEGVDAEALKTAAERLLQKLAPGAVVLASV 818 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + +K +++ + + + +A A+ L GG GGGRP++AQ+GG + K +AI Sbjct: 819 PELEKVNLVAAFSSEAQQKNLHAGKFIGEIAQ-LCGGKGGGRPNLAQAGGRDAAKLPEAI 877 Query: 890 AGVASFLKK 898 L + Sbjct: 878 EFARKKLIE 886 >gi|312171401|emb|CBX79660.1| Alanyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158] Length = 833 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 373/869 (42%), Positives = 523/869 (60%), Gaps = 56/869 (6%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK++F GQ+K Y + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDVFLGQDKRNYTRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K AI AW+LLT + F L + +L++TVY+ D+EAF +W+K G+ ++IIRI N Sbjct: 61 KHEAIAFAWELLTSSQWFGLPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGS 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212 DNFW M +TGPCGPCSEIFFD G+ I GG PGS E+G+RYIEIWN+VFMQF ++ Sbjct: 121 AYASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRKA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LPK S+DTGMGLER+ VLQ +NY+IDLF LIQ+ QVTG + + Sbjct: 181 DGTMLPLPKPSVDTGMGLERITAVLQHVNSNYEIDLFAQLIQSVAQVTGATD--LSNKSL 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG LL L Sbjct: 239 RVIADHIRSCAFLIADGVIPSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLLAPLIAV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MG+A +L + +E+ LR+E+E+F KTL+RGL LLD L +L ++L+G+ F+LYD Sbjct: 299 MGAAGDDLKSQQSQVEQVLRTEEEQFAKTLERGLALLDEELENLQ-GDMLDGETVFRLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T G P+D+ D+ R L ID F +A+E+QR RAR + + ++ Sbjct: 358 TFGFPVDLTADVCRERNLK-IDEAGFERAMEQQRQRAR------DASGFGSDYNNVIRID 410 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 A++F GY L+ +++ + AI G+ +GQ+ Sbjct: 411 QASEFKGYQQLQ-----------------------LNAAISAIFVDGQAANTISAGQEGV 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +V D TPFYAE+GGQ+GDTG G+ +++ QK A+ H + G LR + Sbjct: 448 IVLDATPFYAESGGQVGDTGKLQGNSASFIVSNTQKYAQ-AIGHSGKLAIGELRVGDCVA 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D R ++ +NHSATHLLH AL +LG HVSQ GS + LRFD +H + +T E Sbjct: 507 AQVDEARRARIRLNHSATHLLHAALRQVLGQHVSQKGSLVNDTYLRFDFSHFEAMTPQET 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 + +E+ VN I +NLP+ T IM E A A GA AL G KY+D VRV+S+ G S+ Sbjct: 567 RQVEEIVNAQIRRNLPIETNIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTE 621 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTH S TG+I L I SES AG+RRIEA+TG+ A + L Q+E+L +A +K + Sbjct: 622 LCGGTHASRTGDIGLFRITSESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKAN 681 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSK 807 N+ +V + + R L+ + K Q ++ + + +S+V+ K Sbjct: 682 HSNLNEKVRALIDHARALEKQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPK 741 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 L++++D L+ ++ S II+L ++ + K S++ VT+DL DR A +L A+ + GG Sbjct: 742 MLRTMVDDLKNQLGSAIIVLATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV-GGK 799 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGGRP MAQ+GG + A+AGV S++ Sbjct: 800 GGGRPDMAQAGGTDAMALPAALAGVESWV 828 >gi|283853948|ref|ZP_06371151.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B] gi|283570662|gb|EFC18719.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B] Length = 880 Score = 834 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 390/899 (43%), Positives = 535/899 (59%), Gaps = 42/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF GH+ + SS LIP DPTL+FTN+GMV FK +F GQ+KP Y+ Sbjct: 1 MMTANEIRAKFLDFFAAQGHQKVASSPLIPREDPTLLFTNAGMVQFKKVFLGQDKPGYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY TVY +D+EA LWKKI+GL+ D+I R+ DNFWSM +TGPCGPCSEI FD+G Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLTDDRIFRLGEKDNFWSMGDTGPCGPCSEIMFDRG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + + +RY+EIWNLVFMQ++Q R LP+ SIDTGMGLER+A V+Q Sbjct: 181 EEVSCGPDCGIGTCDCDRYLEIWNLVFMQYDQIAPGNRVALPRPSIDTGMGLERIAAVVQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+DIDLFK +I ++ + G+ Y N+ RVI DH RS +FL+ADG++P+NEG Sbjct: 241 GVHSNFDIDLFKAIIASAATIAGVAYGHNDEHDTALRVIADHSRSVAFLLADGVMPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ + +L+G ++P + + MG A+PEL+ + +E +R E+E Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLYKTAGTVVDVMGDAFPELLAGREFMERVVREEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RFG TLD+GLV+L L LG+ + +++G AFKLYDT+G PLDI+ D+ RG+A D Sbjct: 361 RFGVTLDKGLVILAEELDRLGEAGEAVISGQFAFKLYDTYGFPLDIVNDVAGKRGMAA-D 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + + EQ++RA+ G G ++ L E ++F+GYD L G+ Sbjct: 420 EDGYRACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYDALTGA-------- 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V A+V +G+ VE V+G+ +V TPFY E+GGQ GD G Sbjct: 472 ---------------SRVNALVSAEGQAVERLVAGETGYMVCAVTPFYGESGGQSGDVGL 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + K + HH V++G + + L +D R + NH+ATHLL Sbjct: 517 VSTLTGDAAVIGAIKAGPDLTAHHIEVKKGEILLDQEAELAVDPAVRAATARNHTATHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV+Q GS +TPD LRFD TH +T EL +ED VN I + PVVT + Sbjct: 577 HKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELARVEDEVNAAILLDAPVVTEV 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A A GA AL G KY D VRVV V + CGGTH+ +TG+ I+SE Sbjct: 637 MGIDAARAKGATALFGEKYGDEVRVVEVPG-----VTMEFCGGTHLRATGQAGSFLILSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG RRIEA TG A H+ + LK G +V RV++++++ R L Sbjct: 692 SGVAAGTRRIEAATGLNALRHVREMRGEYDEGLKTLKAKPGELVPRVKKLFDDIRALGKE 751 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +L ++ V + + + K L+ MD L+ K+ SG+I L Sbjct: 752 KEQLAGKLASGQGRDLMAGLEEVGGVKLLCARVDAPNVKALREAMDDLRSKLPSGVIALA 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ K S+++ V++DL RF A L + +A +GG G GGRP MAQ+GG N D+ Sbjct: 812 AEQEDGKVSLIVAVSKDLHARFTAPVLIKDAAASVGGSG-GGRPDMAQAGGTNPAGIDE 869 >gi|239908964|ref|YP_002955706.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1] gi|239798831|dbj|BAH77820.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1] Length = 880 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 375/899 (41%), Positives = 524/899 (58%), Gaps = 42/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+F GH+++ SS L+P DPTL+FTN+GMV FK +F GQ+KP Y Sbjct: 1 MMTATEIRAKFLEYFASKGHQVVASSPLVPREDPTLLFTNAGMVQFKKVFLGQDKPGYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAITFAWEFLTEVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY TVY +D+EA LWKKI+GLS ++I R+ DNFWSM +TGPCGPCSEI +D+G Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLSDERIFRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + + +RY+EIWNLVFMQF+Q R LP+ SIDTGMGLER+A V+Q Sbjct: 181 EEVGCGPNCGIGTCDCDRYLEIWNLVFMQFDQIEPGNRVALPRPSIDTGMGLERIAAVVQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+DIDLF+ +I ++ Q+ G+ Y + RVI DH RS +FL+ADG++P+NEG Sbjct: 241 GVHSNFDIDLFQTIISSAAQIAGVTYGDNDEHDTALRVIGDHSRSVAFLLADGVMPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ + +L+G ++P + + MG AYPEL+ ++ +E +R E+E Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLYKTAGVVVDVMGPAYPELVASREFMERVVREEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RFG TLD+GL +L L + + + G+ AFKLYDT+G PLDI+ D+ RG+A D Sbjct: 361 RFGVTLDKGLAILAEELDRMAAAGETTITGEFAFKLYDTYGFPLDIVNDVAGKRGMAA-D 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + + EQ++RA+ G G ++ L E ++F GY L Sbjct: 420 EDGYRVCMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFTGYTEL----------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V A++ +G+ VE ++G+ +V TPFY E+GGQ GD G Sbjct: 469 ------------TAKSRVNALISAEGQAVERLIAGETGYMVSAVTPFYGESGGQAGDVGT 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + K + HH V++G + + L +D R + NH+ THLL Sbjct: 517 VTTLTGDVAVLGTMKAGPELTAHHIQVQKGEILLDQEAELVVDAAVRAATARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS +TPD LRFD +H +T+ EL +ED VN I + PVV Sbjct: 577 HKALKNVLGGHVNQAGSLVTPDRLRFDFSHVSAMTAEELARVEDEVNAAILLDAPVVVEE 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D V + S LCGGTH+ +TG+ YI+SE Sbjct: 637 LGIEAARAKGATALFGEKYGDVV-----RVVEVPGVSMELCGGTHIGATGQAGSFYILSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG RRIEA+TG A H+ +L +K G + RV+++ +E + L Sbjct: 692 SGVAAGTRRIEAVTGVNALRHVREMRGELDEALKTVKAKPGELGARVKKLLDEIKALGKD 751 Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +L +I V + + K ++ MD L+ K+ SG++ + Sbjct: 752 KEQLAAKLASGQGRDLMAGLEEIGGVKVLCARVDAPSVKAMREAMDDLRSKLPSGVVAIA 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S+++ V++DL DRF A L + +A +GG G GGRP MAQ+GG N D+ Sbjct: 812 SEQEGGKVSLIVAVSKDLHDRFTAPTLIKDAAAAVGGSG-GGRPDMAQAGGTNPAGIDE 869 >gi|238924198|ref|YP_002937714.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656] gi|238875873|gb|ACR75580.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656] Length = 886 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 345/917 (37%), Positives = 502/917 (54%), Gaps = 57/917 (6%) Query: 1 MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M + +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P Sbjct: 1 MKKSYGVNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPP 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + VTT QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 61 RRRVTTCQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEV 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGP 171 L++ RLY ++Y ED+EAF +W K G+ D+I R DNFW GPCGP Sbjct: 117 LGLEKDRLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGP 175 Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 CSEI++D+GE G P + +R++E+WN VF QF L +IDTGMG Sbjct: 176 CSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMG 235 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287 LER+A V+Q+ + +DID K + +++G KY + V+ R+I DH+RSS+FLI+ Sbjct: 236 LERLAVVMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLIS 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG++P+NEGRGYVLRRI+RRA + R LG + + + E YPEL + K I Sbjct: 296 DGVMPSNEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 + L E+E+F KT+D+GL +L + H+ D ++L+G+ AFKLYDT+G P+D+ +IL Sbjct: 356 LKVLTQEEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEIL 415 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G D F +E QR +AR + ++ + T+F GYD L Sbjct: 416 EEKGFT-YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD 474 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ + + ++VE G K V+ TPFYA G Sbjct: 475 -----------------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMG 511 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ GD G + + D K + H V G++RT L++D + R Sbjct: 512 GQQGDKGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLL AL +LG+HV Q GS + RFD +H +T+ ELK +ED VN+ I + Sbjct: 572 NHSATHLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINE 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T IM ++A +GA AL G KY ++VRVVS+ G S CGGTHV +T +I Sbjct: 632 AIEVRTDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I+SES + AG+RRIEAITG ++ +++L+ A +K + N+ R+E + Sbjct: 687 KAFKILSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLIA 746 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E + LQ + K + + L + + ++ + VD L+ + D+L++K+ Sbjct: 747 EMKALQSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKL 806 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G+I+L S E K +++ + T+ + +A +L + A +GGGG GGRP+MAQ+GG Sbjct: 807 GEGVIVLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGG-GGRPNMAQAGG 864 Query: 880 PNGNKADQAIAGVASFL 896 N AIA V L Sbjct: 865 KNPAGIPDAIASVKDAL 881 >gi|291524925|emb|CBK90512.1| alanyl-tRNA synthetase [Eubacterium rectale DSM 17629] Length = 886 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 345/917 (37%), Positives = 503/917 (54%), Gaps = 57/917 (6%) Query: 1 MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M + +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P Sbjct: 1 MKKSYGVNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPP 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + VTT QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 61 RRRVTTCQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEV 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGP 171 L++ RLY ++Y ED+EAF +W K G+ D+I R DNFW GPCGP Sbjct: 117 LGLEKDRLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGP 175 Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 CSEI++D+GE G P + +R++E+WN VF QF L +IDTGMG Sbjct: 176 CSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMG 235 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287 LER+A V+Q+ + +DID K + +++G KY + V+ R+I DH+RSS+FLI+ Sbjct: 236 LERLAVVMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLIS 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG++P+NEGRGYVLRRI+RRA + R LG + + + E YPEL + K I Sbjct: 296 DGVMPSNEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 + L E+E+F KT+D+GL +L + H+ D ++L+G+ AFKLYDT+G P+D+ +IL Sbjct: 356 LKVLTQEEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEIL 415 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G D F +E QR +AR + ++ + T+F GYD L Sbjct: 416 EEKGFT-YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD 474 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ + + ++VE G K V+ TPFYA G Sbjct: 475 -----------------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMG 511 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ GD G + + D K + H V G++RT L++D + R Sbjct: 512 GQQGDKGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLL AL +LG+HV Q GS + RFD +H +T+ ELK +ED VN+ I + Sbjct: 572 NHSATHLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINE 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T IM ++A +GA AL G KY ++VRVVS+ G S CGGTHV +T +I Sbjct: 632 AIEVRTDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+SES + AG+RRIEAITG ++ +++L+ A +K + N+ R+E + Sbjct: 687 KVFKILSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMA 746 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E + LQ + K + + L + + ++ + VD L+ + D+L++K+ Sbjct: 747 EMKALQSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKL 806 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G+I+L S E K +++ + T+ + +A +L + A +GGGG GGRP+MAQ+GG Sbjct: 807 GEGVIVLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGG-GGRPNMAQAGG 864 Query: 880 PNGNKADQAIAGVASFL 896 N AIA V L Sbjct: 865 KNPAGIPDAIASVKDAL 881 >gi|319638074|ref|ZP_07992838.1| alanyl-tRNA synthetase [Neisseria mucosa C102] gi|317400719|gb|EFV81376.1| alanyl-tRNA synthetase [Neisseria mucosa C102] Length = 964 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 361/969 (37%), Positives = 516/969 (53%), Gaps = 83/969 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + Sbjct: 60 ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 ++ + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGP Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179 Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 CSEIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGL Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG+ Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + LG + L+P L EMG+AYPEL + + I E Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGAAYPELKEKQTQIMEA 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI------LNGDVAFKLYDTHGLPLDIMQDI 404 LR+E+ RFG+TL++G+ L + VL+ + ++ L G+ + Sbjct: 359 LRAEESRFGETLEKGMGLFNQVLNGMKFLKLESLLPQDGVGKPLTLKTADGVEFTAASRV 418 Query: 405 LCARGLAGIDII---SFNQALEEQRSRARAHSLGLGSGT----------TEKIWFSLKEK 451 ++ I S N+ + A + + + I S Sbjct: 419 APSKKQIVIRPRVSGSLNEGMYIDLQAALETAHIPDAKKPFAEALNTYLMDNIANSKLVI 478 Query: 452 YGATQFIGYDLLRGSKFMKED--------------------------------------R 473 G F YD + D Sbjct: 479 GGEHIFKLYDTYGFPYDLTADMARELGIELDEAGFEREMEAQRARARAAQSFKANAQLPY 538 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + S V A+ + GE V+E G + VV D TPFYAE+GGQ+GD G Sbjct: 539 EGQDTEFKGYSERQTESKVLALYKDGEQVDELNEGDEGAVVIDFTPFYAESGGQVGDVGY 598 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 599 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 658 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 659 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 718 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + S+ LCGGTHVS TG+I L I+SE Sbjct: 719 MSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKIISE 773 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQL 772 I AG+RRIEAITG A Q+ +K + + K +V+ +++ + L+ Sbjct: 774 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 833 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ K +L V + ++ I + L+ ++ L K + I++L Sbjct: 834 ELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIVLL 892 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V + + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + +K + Sbjct: 893 VAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLPE 950 Query: 888 AIAGVASFL 896 + V ++ Sbjct: 951 MLVSVEGWV 959 >gi|166365301|ref|YP_001657574.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843] gi|205830148|sp|B0JI84|SYA_MICAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|166087674|dbj|BAG02382.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843] Length = 874 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 338/904 (37%), Positives = 511/904 (56%), Gaps = 50/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL+FF H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P + T Sbjct: 6 SGSEIRQRFLDFFAARNHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKTPEFPRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F+L Sbjct: 65 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPP 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ EDEEAF +W+ G+ A +I ++ DNFW TGPCGPCSEI++D Sbjct: 121 ERLVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEEDNFWVSGPTGPCGPCSEIYYDFHPE 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ N Sbjct: 181 L-GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVAN 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL ++ + ++ + Y+ + + +VI DH+RS +IADGI +N RGY Sbjct: 240 NYETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + S Y + + + +I+ L E+ RF Sbjct: 300 VLRRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL+ +L + ++G AF LYDT+G PL++ Q+I +GL+ +D F Sbjct: 360 ETLERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 Q +++Q+ R++A + T + L E T+F+GY L+ Sbjct: 417 QEMKKQQQRSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++ G+ VE A +G +V+VV D+TPFYAE+GGQ+GD G GD + Sbjct: 461 --------ATATVTAVLVAGKTVESAAAGTEVQVVLDRTPFYAESGGQIGDKGYLTGDNL 512 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV +K GIF+H +ERGI+ T ++ ID RR+ NH+ATHLL AL Sbjct: 513 LIRIEDV-QKESGIFIHFGRIERGIVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 571 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +SQ GS ++ D LRFD +P+TS+EL+ +E+ +N IA+ +M E+A Sbjct: 572 LVDGGISQAGSLVSFDRLRFDFNCPRPLTSSELQQVEEQINTWIAEAHDTQIAVMGLEEA 631 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRV+ + S LCGGTHV +T EI L I+SE+ I AG Sbjct: 632 KQKGAIAMFGEKYGSEVRVIDIPS-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 686 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G ++L +D+ +++L KV + R+ + E + Q K Sbjct: 687 IRRIEAVAGPAVLAYLNERDQVVRALCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 746 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + I + + + ++D+ L + + LQ+K+ G ++L Sbjct: 747 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 806 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ + ++ A AK+ GG GGGRP++AQ+GG + +K +A+A Sbjct: 807 KVSLVAAFSPRVIKDKGLQAGKFIGAIAKICAGG-GGGRPNLAQAGGRDASKLSEALAKA 865 Query: 893 ASFL 896 S L Sbjct: 866 KSQL 869 >gi|154502472|ref|ZP_02039532.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149] gi|153796868|gb|EDN79288.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149] Length = 879 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 345/906 (38%), Positives = 508/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y+EDEEAF++W K G+ A++I R DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYEEDEEAFEIWNKKMGIPAERIFRFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGHYSELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ +Y + ++ RVI DH RS +F+I+DGI+P+NEGRGY Sbjct: 241 SIFDVDTLKALRDHICRLADTEYGKDAQADISIRVITDHTRSVTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I + + E+++F Sbjct: 301 VLRRLLRRACRHGRLLGIEGSFIPELAQTVIEGSKDGYPELEEKKDFILKVIAKEEDQFN 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + + L+G AFKLYDT+G P+D+ ++IL +G+ +D Sbjct: 361 KTIDQGLGILAEMTAKMEAEQTTTLSGADAFKLYDTYGFPIDLTKEILEEKGM-QVDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ ++E QR ARA + + + + F+GY+ L Sbjct: 420 FHASMEVQRKTARAARGETNYMGADVTVYESIDPSITSTFVGYENLAW------------ 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + EIVE GQ+ V ++TPFYA +GGQ DTG Sbjct: 468 -----------KSPITVLTSDTEIVEALSDGQRGTVFAEETPFYATSGGQEADTGIIRTA 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D K G H +V +G+++T L +D + R + NHSATHLL AL Sbjct: 517 EGEFKVEDTVKLLGGKIGHVGVVIKGMIKTGDQAELCVDAEKRALSARNHSATHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG+HV Q GS + D LRFD +H +T+ EL+ +E+ VN+ I LPV M E Sbjct: 577 RTVLGTHVEQAGSSVNEDRLRFDFSHFSAMTAEELQKVEEIVNEQIVAGLPVKVENMPIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV++ G +S CGGTHV +T EIM I+SES + Sbjct: 637 EARKTGAQALFGEKYGDVVRVVNM-----GDYSIEFCGGTHVKNTNEIMAFKILSESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + ++KL A LK + N+ ++ + E + L Sbjct: 692 AGVRRIEALTSKGLIRYYDNLEKKLNEAAKVLKATPDNLAEKIAHLTAENKALHSEVESL 751 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + +I V ++ + VD L+ + D L++K+ G+++L Sbjct: 752 KSKLAQDAMGDVMDQVQEIKGVKLLAAEVDGVDMNGLRDLGDQLKEKLGEGVVVLASG-N 810 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K S+++ T+ + +A +L + A ++GGGG GGRP+MAQ+GG N +A+ Sbjct: 811 DGKVSLMVTATDAAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGIQEALKK 869 Query: 892 VASFLK 897 A L+ Sbjct: 870 AAEALE 875 >gi|329926749|ref|ZP_08281157.1| alanine--tRNA ligase [Paenibacillus sp. HGF5] gi|328938949|gb|EGG35317.1| alanine--tRNA ligase [Paenibacillus sp. HGF5] Length = 875 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 351/911 (38%), Positives = 516/911 (56%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 1 MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L +TVY EDEEA+KLW + GL ++II++ DNFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPEKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDR 173 Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 GE P S E ER++E+WNLVF QF LP +IDTG GLER A+ Sbjct: 174 GEGYDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293 +LQ +N+D DLF+ +IQ + ++ G+KY + +VI DH+R+ +F + DG+LP+ Sbjct: 234 ILQNVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPS 293 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ Y ++LG +P M L + MG YPE+++ + IE+ + + Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIAT 353 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL GL +L V + K +++G AFKLYDT+G P D+ +D GL Sbjct: 354 EEEQFHKTLSDGLNILADVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASEHGLT 413 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A++EQR RARA S + L + ++F+GY+ Sbjct: 414 -VDREGFDAAMKEQRDRARAARHETESMKVQGGV--LSDYTVKSEFVGYNDTVS------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V AIV + G+ +V+ D TPFYAE+GGQ+ D Sbjct: 465 -----------------EAKVLAIVSGDSFADSVSEGETCQVILDVTPFYAESGGQVSDQ 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G +R ++ + K G VH VE G L+ ++ +D R + NH+ATH Sbjct: 508 GMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDTAMRNDIVKNHTATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN+ + +++PVV Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVPVVI 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++A A GA AL G KY D VRVV V G +S LCGG HV +T +I + ++ Sbjct: 628 ERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIFKLL 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ES I +G+RRIEA+TG+ A HL GQ + LK A LK + +V R+E + ++ + L Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVKDLA 742 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L + S ++ + + ++ + L+ + D L+ K+ I++ Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPETILV 802 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + + K + ++ V ++L+ ++A L + A V GGGG GGRP MAQ+GG + +K Sbjct: 803 LGSKAGD-KVNFVVAVPQELVKQGYHAGKLVKEVASVCGGGG-GGRPDMAQAGGKDASKL 860 Query: 886 DQAIAGVASFL 896 QA+ + Sbjct: 861 AQALQHAEDLV 871 >gi|299530963|ref|ZP_07044376.1| alanyl-tRNA synthetase [Comamonas testosteroni S44] gi|298720920|gb|EFI61864.1| alanyl-tRNA synthetase [Comamonas testosteroni S44] Length = 874 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 370/909 (40%), Positives = 529/909 (58%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+F+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+ W+LLTK F L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 +L TVY ED+EA+ +WK + GL A++IIRI +DNFW MA+TGPCGPCSEI Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+A+ + T + + + +VI DH+R++SFL++DG++P+N Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRETHTED--LSTPSLKVIADHIRATSFLVSDGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I L++E Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQEAHITSVLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A++ Q+ ARA K+ +L+ A F GYD L Sbjct: 422 EAGFNAAMQHQKETARAAGKF-------KMDRALEYTGDANVFTGYDKL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 464 ------------AEAAKIVALYADGVSVNELQAGQNGVVVLDTTPFYAESGGQVGDQGVI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R + D K +F HH ++E G L+ ++ +D R NHS TH++H Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+ +++ IE VN + N R+M Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTATDARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L +V ES Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIE ITG+ A ++L + + A+ K + R+ ++ + L+ Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPVAELTNRIGGALDQIKALEKEI 745 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L + V ++ + D+K L+ MD L+ K+ + +I+L Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT+ + A +L A+ +GG G GG+P MA +GG + A+ Sbjct: 806 VDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDAAAVPAAL 863 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 864 ASVQAWAAE 872 >gi|238022662|ref|ZP_04603088.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147] gi|237865865|gb|EEP67001.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147] Length = 963 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 356/966 (36%), Positives = 513/966 (53%), Gaps = 79/966 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FFQ GH+++ SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTNELRAKFLQFFQSKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ I AW+ LT + + Sbjct: 61 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLN 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L +TVY ED+EA+ +W + G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 121 IPKEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 181 TEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG++ Sbjct: 241 RMAAVMQGVHSNYEIDLFQDLLKAVARETGTA-FSMEEPSLKVIADHIRSCSFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG L+P L EMG AYPEL + + I E L Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDIL 405 R E+ RFG+TL++G+ L + V + + +L G+ ++ Sbjct: 360 RGEEMRFGETLEKGMGLFNQVWDAMQFAKLESLLPMDGVGEPLRLTTADGVAFTVVSRNA 419 Query: 406 CARGLAGIDII-----------SFNQALEEQRSRARAHSLGLGSGT-TEKIWFSLKEKYG 453 + + + +++ A G I S G Sbjct: 420 GNGKQIVVRPQVSGSLNESFAFNMEDVVTKEKPEAHRAYGEALQGYLKNNIANSKLIMSG 479 Query: 454 ATQFIGYD------------------LLRGSKFMKEDRKVLCQKPPI------------- 482 F YD L F +E + Sbjct: 480 EHIFKLYDTYGFPYDLTADMARELGIELDEEGFEREMEAQRARARAAQNFKANAQVAYDG 539 Query: 483 -------DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + V A+ + GE V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 540 AETQFHGYDKRSLDATVLALYRDGEAVNELNAGESGIVVLDHTPFYAESGGQVGDVGFIF 599 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R ++ D QK + H + G L+ S+ +D R + NHS THL+H Sbjct: 600 SGENRFEVEDTQKIKAAVHGHFGTLVSGSLKVGDSICAEVDNVVREAIMRNHSVTHLMHK 659 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + RFD++H + IT+ E+ +E VN I QN+PV M+ Sbjct: 660 ALRDVLGTHVEQKGSLQNAELTRFDISHPQAITAEEIAEVERRVNHAIMQNVPVRVETMS 719 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA SGA L G KY D VRV+++ G +S+ LCGGTHV+ TG+I I+SE Sbjct: 720 LEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISEGG 774 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIH 774 I AGIRR+EAITGQ A + Q+ +K + +K +++ +++ + L+ Sbjct: 775 IAAGIRRVEAITGQAALDWVQNQENLIKEAVNEVKAQGAKDLLAKIQTALAHSKALEKEL 834 Query: 775 AKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ K +L V + V + E D+ L+ ++ L K I++L+ Sbjct: 835 ARAKAELAVHAGAKLLDNAVTVGAARLVAAQIEADAAALRDIVTDLTSK-GDNIVVLLAA 893 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K ++ V++ + + A DL + +A+ + GG GGGRP +AQ+GG + K I Sbjct: 894 VNDGKIALCAGVSKAMTAKVKAGDLVKHAAEQI-GGKGGGRPDLAQAGGSDVEKLPAMIE 952 Query: 891 GVASFL 896 V ++ Sbjct: 953 SVKDWV 958 >gi|291545954|emb|CBL19062.1| alanyl-tRNA synthetase [Ruminococcus sp. SR1/5] Length = 880 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 362/912 (39%), Positives = 519/912 (56%), Gaps = 50/912 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FL+F + GH ++ S SL+P D +L+ N+GM P K FTG EKP Sbjct: 1 MKKYGVNELRKMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI +W+ LT+ Sbjct: 61 TRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIHWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY ++Y +DEEAF +W K G+ +++I R DNFW GPCGPCSEI++D Sbjct: 117 GLDADRLYPSIYLDDEEAFNIWNKEVGIPSERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G PG + +RY+E+WN VF QFE L + +IDTGMGLER+A V Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D L ++ +Y + V+ R+I DH+RS++F+I+DGI+P N Sbjct: 236 VQDVDSIFDVDTICALRNLVCEIAHKEYEKNYADDVSIRLITDHIRSATFMISDGIMPTN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + L + + YPEL + K I L +E Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGTFLAKLSAQVIESSKAGYPELEEKKEFIFRVLTNE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + +F KT+D+GL +L + + K ++ L+GD AFKLYDT+G PLD+ ++IL +G G Sbjct: 356 ENQFNKTIDQGLRILSDMEEDMKKAGEKTLSGDNAFKLYDTYGFPLDLTKEILEEKGY-G 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR +AR + + + T+F+GYD L Sbjct: 415 IDEEGFQKAMEEQRVKARTAREVTNYMGADATVYDDIDVNVTTEFVGYDHL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + + EIV+ GQK V +QTPFYA GGQ GDTG Sbjct: 466 --------------TFDSKVTVLTTETEIVDSLTEGQKGTVFVEQTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K G F H +E G++ + ++ L ++ + R+ NHSATHL Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISSGETVSLKVNEEARKDTEKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H + +T+ EL++ E+ VN I L V T Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTAEELQATEELVNKEIQAGLDVHTD 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A SGA AL G KY+ +VRVVS+ G S LCGGTHV +T IML IVS Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG+ + Q+E L A LK + VV ++ + E + LQ Sbjct: 687 ESGIAAGVRRIEALTGKAVIEYYRKQEELLHEAAKALKANTAEVVEKISHLQAEVKALQS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K + L ++ V ++ + VD L+ + D L++++ G+++L Sbjct: 747 ENESLKSKAAQSALGDVMDKVVEVNGVKLLAAKVEGVDMNGLRDLGDKLKEQLGEGVVLL 806 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K ++L + T+ +A +L + A ++GGGG GGRP+MAQ+GG N KA Sbjct: 807 AAV-NDGKVNLLAMATDAAQKAGAHAGNLIKAVATIVGGGG-GGRPNMAQAGGKNPEKAQ 864 Query: 887 QAIAGVASFLKK 898 +A+ A L+K Sbjct: 865 EAMDAAAGILEK 876 >gi|291529066|emb|CBK94652.1| alanyl-tRNA synthetase [Eubacterium rectale M104/1] Length = 886 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 345/917 (37%), Positives = 503/917 (54%), Gaps = 57/917 (6%) Query: 1 MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M + +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P Sbjct: 1 MKKSYGVNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPP 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + VTT QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 61 RRRVTTCQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEV 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGP 171 L++ RLY ++Y ED+EAF +W K G+ D+I R DNFW GPCGP Sbjct: 117 LGLEKDRLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGP 175 Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 CSEI++D+GE G P + +R++E+WN VF QF L +IDTGMG Sbjct: 176 CSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMG 235 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287 LER+A V+Q+ + +DID K + +++G KY + V+ R+I DH+RSS+FLI+ Sbjct: 236 LERLAVVMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLIS 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG++P+NEGRGYVLRRI+RRA + R LG + + + E YPEL + K I Sbjct: 296 DGVMPSNEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 + L E+E+F KT+D+GL +L + H+ D ++L+G+ AFKLYDT+G P+D+ +IL Sbjct: 356 LKVLTQEEEKFAKTIDQGLGILADMEEHMKADGVKVLSGENAFKLYDTYGFPVDLTAEIL 415 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G D F +E QR +AR + ++ + T+F GYD L Sbjct: 416 EEKGFT-YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD 474 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ + + ++VE G K V+ TPFYA G Sbjct: 475 -----------------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMG 511 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ GD G + + D K + H V G++RT L++D + R Sbjct: 512 GQQGDKGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLL AL +LG+HV Q GS + RFD +H +T+ ELK +ED VN+ I + Sbjct: 572 NHSATHLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINE 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T IM ++A +GA AL G KY ++VRVVS+ G S CGGTHV +T +I Sbjct: 632 AIEVRTDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+SES + AG+RRIEAITG ++ +++L+ A +K + N+ R+E + Sbjct: 687 KVFKILSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMA 746 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E + LQ + K + + L + + ++ + VD L+ + D+L++K+ Sbjct: 747 EMKALQSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKL 806 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G+I+L S E K +++ + T+ + +A +L + A +GGGG GGRP+MAQ+GG Sbjct: 807 GEGVIVLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGG-GGRPNMAQAGG 864 Query: 880 PNGNKADQAIAGVASFL 896 N AIA V L Sbjct: 865 KNPAGIPDAIASVKDAL 881 >gi|261405443|ref|YP_003241684.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10] gi|261281906|gb|ACX63877.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10] Length = 875 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 351/911 (38%), Positives = 517/911 (56%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 1 MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L +TVY EDEEA+KLW + GL ++II++ DNFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPEKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDR 173 Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 GE P S E ER++E+WNLVF QF LP +IDTG GLER A+ Sbjct: 174 GEGYDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293 +LQ +N+D DLF+ +IQ + ++ G+KY + +VI DH+R+ +F + DG+LP+ Sbjct: 234 ILQNVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPS 293 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ Y ++LG +P M L + MG YPE+++ + IE+ + + Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIAT 353 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KTL GL +L V + K +++G+ AFKLYDT+G P D+ +D GL Sbjct: 354 EEEQFHKTLSDGLNILADVSAEAKKQGKSVISGNDAFKLYDTYGFPFDLTEDYASEHGLT 413 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A++EQR RARA S + L + ++F+GY+ Sbjct: 414 -VDREGFDAAMKEQRDRARAARHETESMKVQGGV--LSDYTVKSEFVGYNDTVS------ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V AIV + G+ +V+ D TPFYAE+GGQ+ D Sbjct: 465 -----------------EAKVLAIVSGDSFADSVSEGETCQVILDVTPFYAESGGQVSDQ 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G +R ++ + K G VH VE G L+ ++ +D R + NH+ATH Sbjct: 508 GMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDSAMRNDIVKNHTATH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN+ + +++PVV Sbjct: 568 LLHKALKEVLGEHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVPVVI 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++A A GA AL G KY D VRVV V G +S LCGG HV +T +I + ++ Sbjct: 628 ERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIFKLL 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ES I +G+RRIEA+TG+ A HL GQ + LK A LK + +V R+E + ++ + L Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVKDLA 742 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L + S ++ + + ++ + L+ + D L+ K+ I++ Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPETILV 802 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + + K + ++ V ++L+ ++A L + A V GGGG GGRP MAQ+GG + +K Sbjct: 803 LGSKAGD-KVNFVVAVPQELVKQGYHAGKLVKEVASVCGGGG-GGRPDMAQAGGKDASKL 860 Query: 886 DQAIAGVASFL 896 QA+ + Sbjct: 861 AQALQHAEDLV 871 >gi|322382967|ref|ZP_08056799.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153087|gb|EFX45545.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 882 Score = 832 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 343/912 (37%), Positives = 521/912 (57%), Gaps = 54/912 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L FF GH++ PS+SL+P ND +L++ N+GM P K F G+ P + Sbjct: 9 MKASEIRSKWLNFFASKGHKVEPSASLVPHNDASLLWINAGMAPLKPYFDGRIIPENPRI 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE+AI AW+ LT K Sbjct: 69 VNAQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEQAITWAWEFLTDPKWIG 124 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + R+ +TVY ED+EAF LW GL ++I ++ DNFW + E GPCGPC+EIF+D+ Sbjct: 125 FEPERISVTVYKEDQEAFDLWHNKIGLPEERIYKLGD-DNFWGIGE-GPCGPCTEIFYDR 182 Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 GE E ER++E+WNLVF QF LP +IDTG GLER A + Sbjct: 183 GEAYGDLSDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPSKNIDTGAGLERFAAI 242 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 LQ +N+D DLF+ +IQ + + + Y+ + +VI DH+R+ +F + DG+LP+N Sbjct: 243 LQNVDSNFDTDLFQPMIQKTCGLAKVSYKEKEETDIALKVIADHIRTVAFSVGDGVLPSN 302 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV+RR++RRA+ Y ++LG +P M L+PALC MG Y E+++ + IE+ +R+E Sbjct: 303 EGRGYVIRRLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKIIRTE 362 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL GL +L +++ K + + G AFKLYDT+G P+D+ +D +G+ Sbjct: 363 EERFHETLSDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQGMT- 421 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +++EQR RARA S + L + ++F+GY+ L Sbjct: 422 VDKEGFEASMQEQRERARAARQDTDSMNVQG--GPLADFTDKSEFVGYNDL--------- 470 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V + + A++ +V+ G+ +VV D+TPFYAE+GGQ+ D G Sbjct: 471 --------------VVPAKIIALMHNNTMVDIVNEGEICQVVLDRTPFYAESGGQVSDKG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 L++ +V K G VH +VE+G R ++D R + NH+ATHL Sbjct: 517 TIRYGETLLRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHTATHL 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL+ +LG HV+Q GS + LRFD +H IT EL+ +E VN+ I QN+PV+ + Sbjct: 577 LHKALNEVLGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIPVIIK 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A A GA AL G KY V G +S LCGG HV++T EI IVS Sbjct: 637 LMPIDEAKAMGAMALFGEKYGKVV-----RVVRVGDYSLELCGGCHVANTAEIGQFKIVS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +G+RRIEA+ G+ A +++ Q LK A LK +V RV+ I + ++L Sbjct: 692 ESGIGSGVRRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMKELNR 751 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + +L+ + ++ + ++ ++ D L+ + D ++ +I SG+I+L Sbjct: 752 EIESLRSKLSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSGVIVL 811 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 S + K +++ VT+DL + +A + + +A + GGGG GGRP MAQ+GG + +K Sbjct: 812 GAASGQ-KVNLVAAVTQDLTKKGLHAGQIVKAAASICGGGG-GGRPDMAQAGGKDPSKLK 869 Query: 887 QAIAGVASFLKK 898 +A+ V +++++ Sbjct: 870 EALLYVETYIQQ 881 >gi|159030141|emb|CAO91033.1| alaS [Microcystis aeruginosa PCC 7806] Length = 878 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 337/904 (37%), Positives = 511/904 (56%), Gaps = 50/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL+FF H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P + T Sbjct: 10 SGSEIRQRFLDFFAARNHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKTPEFPRAT 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F+L Sbjct: 69 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPP 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ EDEEAF +W+ G+ A +I ++ DNFW TGPCGPCSEI++D Sbjct: 125 ERLVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEADNFWVSGPTGPCGPCSEIYYDFHPE 184 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ N Sbjct: 185 L-GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVAN 243 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL ++ + ++ + Y+ + + +VI DH+RS +IADGI +N RGY Sbjct: 244 NYETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGY 303 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + S Y + + + +I+ L E+ RF Sbjct: 304 VLRRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFL 363 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL+ +L + ++G AF LYDT+G PL++ Q+I +GL+ +D F Sbjct: 364 ETLERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFE 420 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 Q +++Q+ R++A + T + L E T+F+GY L+ Sbjct: 421 QEMKKQQQRSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++ G+ VE A +G +V+VV DQTPFYAE+GGQ+GD G GD + Sbjct: 465 --------ATATVTAVLVAGKTVESAAAGTEVQVVLDQTPFYAESGGQIGDKGYLTGDNL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ DV +K GIF+H +ERG++ T ++ ID RR+ NH+ATHLL AL Sbjct: 517 LIRVEDV-QKESGIFIHFGRIERGVVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + +SQ GS ++ + LRFD +P+TSAEL+ +E+ +N IA+ +M E+A Sbjct: 576 LVDAGISQAGSLVSFERLRFDFNCPRPLTSAELQQVEEQINTWIAEAHDTQIAVMGLEEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRV+ + S LCGGTHV +T EI L I+SE+ I AG Sbjct: 636 KQKGAIAMFGEKYGSEVRVIDIPR-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 690 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G ++L +D+ ++ L KV + R+ + E + Q K Sbjct: 691 IRRIEAVAGPAVLAYLNERDQVVRDLCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 750 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + I + + + ++D+ L + + LQ+K+ G ++L Sbjct: 751 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 810 Query: 835 KASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ + ++ A AK+ GG GGGRP++AQ+GG + +K +A+A Sbjct: 811 KVSLVAAFSPRVIKDRGLQAGKFIGAIAKICAGG-GGGRPNLAQAGGRDASKLSEALAKA 869 Query: 893 ASFL 896 S L Sbjct: 870 KSQL 873 >gi|323705255|ref|ZP_08116830.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535157|gb|EGB24933.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 877 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 358/907 (39%), Positives = 555/907 (61%), Gaps = 51/907 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF+ GH LPS SL+P ND +L+ N+GM P K FTG+E P + VTT Sbjct: 7 NEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPSRRVTTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R D+D VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +TK +L + R Sbjct: 67 QKCIRT----PDIDRVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPEDR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++T+Y+ D+EAF++W K+ GL ++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 123 LWVTIYENDDEAFEIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEDKG 181 Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R+IE WNLVF QF++ + LPK +IDTGMGLER+AT++QE + Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFDKDAEGNYNPLPKPNIDTGMGLERIATIMQEVDS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D+ + + ++ G+KY + + V+ RVI DH+R +F+I+DGILP+NEGRGYV Sbjct: 242 IFDVDVIRGITDYVGKMAGVKYGADKKSDVSLRVITDHIRGVTFMISDGILPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA Y +LLG P + ++ + AYPE+ + K I++ ++ E+ERF + Sbjct: 302 LRRLLRRAARYGKLLGLDRPFLYDVVDVVVEHYKGAYPEIQERKEYIKKVIKKEEERFKE 361 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +LDG ++ L +L G AFKLYDT+G P+++ ++IL G++ +D + Sbjct: 362 TIDQGLDILDGYINDLKASGKNVLEGSKAFKLYDTYGFPIELTKEILSESGMS-VDEDGY 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + LE QR RAR+ + + I+ ++K+ T+F+GY+ + Sbjct: 421 QKELENQRLRARSSRKEDNALWEKDIYSTMKDI--ETKFVGYEAFKSD------------ 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + V AI++ E+V A +G++V ++ D TPFYAE+GGQ+GD+G + Sbjct: 467 -----------AKVLAIIKDDELVNSAEAGEEVNIILDMTPFYAESGGQVGDSGIIKSED 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + I D +K FVH +ERGIL ++ ID +NR + NH+ATHLLH AL Sbjct: 516 VYINIKDCKKAGGNKFVHIGTIERGILNVGDTVEAIIDEKNRMSTARNHTATHLLHSALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +G HV Q GS +TPD LRFD TH + +T+ E+K IED VN+ I +++ V IM++++ Sbjct: 576 KFIGDHVHQAGSLVTPDRLRFDFTHYQALTAYEIKMIEDEVNEKIYESIGVSIDIMSQDE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI GA AL KY D VRVV++ +S LCGGTHV++T +I I++ES + A Sbjct: 636 AIKKGAMALFQEKYGDVVRVVNI-----SDYSKELCGGTHVTNTIQIGAFKIIAESGVAA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A L + E + ++ LKV++ ++V R+ ++ + + L+ + K Sbjct: 691 GVRRIEAVTGLGALEFLNKKGELISNIEQILKVNEKDIVDRIADLSQTIKDLERQLEQLK 750 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++ + S I + F+S ++++D ELK + D L+ +++S +I+L I ++ Sbjct: 751 SKVVLSMSDKLINSAEDINGIKFVSATLNDLDVDELKMMGDILKDRLKSTVIILATI-RD 809 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K + + + T+D ++R N ++ R + + G GGGR MAQ G N K + A+ Sbjct: 810 EKINFVGMATKDAIERGINVGNIIREICQ-VADGKGGGRADMAQGVGNNLEKINIALETS 868 Query: 893 AS-FLKK 898 S F++K Sbjct: 869 RSLFIEK 875 >gi|326339235|gb|EGD63050.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044] Length = 833 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 374/869 (43%), Positives = 529/869 (60%), Gaps = 56/869 (6%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ ++IIRI N Sbjct: 61 KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212 DNFW M +TGPCGPC+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG + + Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSL 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ L Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYD Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ D+ R + +D F A+EEQR RAR + ++ Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVD 410 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 A++F GYD L ++ V A+ G+ V+ +GQ+ Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 VV DQTPFYAE+GGQ+GD G G + D QK H + G L+ ++ Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQ 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ + E+ Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ G S+ Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A LK Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSK 807 N+ +V + E R+L+ + K Q ++ + V + +S V+ K Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ + GG Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGGRP MAQ+GG + A+A V ++ Sbjct: 800 GGGRPDMAQAGGTDAAALPAALASVKGWV 828 >gi|71083347|ref|YP_266066.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062] gi|83305853|sp|Q4FMX6|SYA_PELUB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71062460|gb|AAZ21463.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062] Length = 889 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 402/913 (44%), Positives = 582/913 (63%), Gaps = 44/913 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKNIFTG EK Y Sbjct: 4 KTLNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNIFTGLEKRDYVRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF +D Sbjct: 64 TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGID 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY DEEAF WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 124 KNRLYVTVYHNDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGD 183 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLER+A +LQ Sbjct: 184 HLEGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGT 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ D FK LI ++ +K +N + RVI DHLR+SSFL+A+G+LP+NEGRGYV Sbjct: 244 HDNYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRR M ++ LLG +P+ ++ L EM + YPEL +A+ LI+ETL++E+E+F Sbjct: 304 LRRIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLV 363 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 LDRG+ +L+ L + +IL G+VAFKLYDT G PLD+ +DIL + + +D F+ Sbjct: 364 LLDRGIKILNEELEKVE--KILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDL 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++E + A+ + G G + ++IWF +K++ GAT F+GY Sbjct: 421 LMKESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGY-------------------- 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 T+ +V I++ + V++ + ++ +QTPFY E+GGQ+ DTG + Sbjct: 461 ---STDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEAFE 517 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++DVQKK +FVH+ V+RG ++ + ++ L ID Q R + HSATHLLH AL + Sbjct: 518 FEVSDVQKKLGDLFVHYGKVKRGSVKLKDNVELKIDTQRRNNIRAYHSATHLLHEALRRV 577 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + D LRFD +H KPI+ E++ IE VN II + V TRIM ++A+ Sbjct: 578 LGEHVTQKGSLVQSDRLRFDFSHMKPISDEEIRKIEHYVNSIIEKKSEVKTRIMTPKEAV 637 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY D VRV+S+ E+G S+ LCGGTHV +T +I I+S+SSI AG+ Sbjct: 638 ENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGV 697 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEE---YRK 769 RR+EA+ + L ++ + + + ++ ++ ++ + Sbjct: 698 RRVEALRDAQLIDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKD 757 Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD-----VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + + ++D +KI D I ++ K+L+ ++D +K+I G+ Sbjct: 758 LNRQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIIDLPFKDLRKLIDEGKKEIGEGL 817 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +++ I + K + + VT+ L +F+AV + R ++V+GG GGGGR AQ+GG +K Sbjct: 818 VVIYAI-NDNKVGLAVGVTKTLEKKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTLPDK 876 Query: 885 ADQAIAGVASFLK 897 +++ + + Sbjct: 877 IEESFENIKKLIN 889 >gi|320197699|gb|EFW72308.1| Alanyl-tRNA synthetase [Escherichia coli EC4100B] Length = 833 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 374/869 (43%), Positives = 529/869 (60%), Gaps = 56/869 (6%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ ++IIRI N Sbjct: 61 KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212 DNFW M +TGPCGPC+EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG + + Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSL 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ L Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYD Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ D+ R + +D F A+EEQR RAR + ++ Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVD 410 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 A++F GYD L ++ V A+ G+ V+ +GQ+ Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 VV DQTPFYAE+GGQ+GD G G + D QK H + G L+ ++ Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQ 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ + E+ Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ G S+ Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A LK Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSK 807 N+ +V + E R+L+ + K Q ++ + V + +S V+ K Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ + GG Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGGRP MAQ+GG + A+A V ++ Sbjct: 800 GGGRPDMAQAGGTDAAALPAALASVKGWV 828 >gi|20807697|ref|NP_622868.1| alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] gi|22096187|sp|Q8RAH4|SYA_THETN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|20516247|gb|AAM24472.1| Alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] Length = 878 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 352/906 (38%), Positives = 534/906 (58%), Gaps = 52/906 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+ GH LPS SL+P ND +L+ NSGM P K FTG+E P + VTT Sbjct: 7 NEIREKFLSFFESKGHLRLPSFSLVPKNDKSLLLINSGMAPLKPYFTGKETPPSRRVTTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ + + L R Sbjct: 67 QRCIRT----PDIERVGKTARHATFFEMLGNFSFGDYFKKEAIPWAWEFVAEVLKLPVDR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++T+Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 123 LWVTIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181 Query: 185 GGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P ++ +RY+E WNLVF QF + + LP +IDTGMGLER+A ++Q Sbjct: 182 CGKPDCGIGCDDCDRYVEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIAAIMQGVD 241 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +D+D+ + + + ++Y + + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 242 TIFDVDVIRGIRDFISDLAEVEYGKDADKDVSIRVITDHIRGITFMISDGILPSNEGRGY 301 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I++ ++ E+ERF Sbjct: 302 VLRRLLRRAARHGKLLGLNDAFLYKVVDSVVENYGGAYPEIIERKDYIKKIIKLEEERFK 361 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GL +L ++ L +L G AFKLYDT+G PLD+ ++IL G+ ID Sbjct: 362 ETVDQGLAILQDYINELKAQGKTVLEGAKAFKLYDTYGFPLDLTKEILQESGIT-IDEEG 420 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 + + LE+QR RAR+ S + I+ +L + +T+F+GY++ Sbjct: 421 YKEELEKQRVRARSSRKEDNSLWEQDIYSTLGDI--STKFVGYEVYES------------ 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + V AIV+ E+VE+A +G V ++ D TPFYAE+GGQ+GD+G + Sbjct: 467 -----------EAKVLAIVKDNEVVEQAEAGDDVSIILDVTPFYAESGGQVGDSGVIEEE 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +++ D +K F+H VERG++ +V ID R+ + NH+ATHLLH AL Sbjct: 516 DTLIKVNDCKKVGNK-FIHIGTVERGLISVGDKVVAKIDVSKRKGAARNHTATHLLHKAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q+GS + D LRFD +H + ++ ELK IE+ VN+ I + LPVV N E Sbjct: 575 KEVLGDHVNQSGSLVAYDRLRFDFSHYQAVSKEELKKIEERVNEKIYEQLPVVVEEKNYE 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA+ GA AL KY D+VRVV + +S LCGGTHV +T EI + IVSES++ Sbjct: 635 DALKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTSEIGIFKIVSESAVG 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG A +L Q E L ++ LK + VV ++E + + + + Sbjct: 690 AGLRRIEALTGIEAIKYLNEQKEILDRVSETLKAQEKEVVSKIENLQQSLKDKEREIEGL 749 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ S + V ++ + + D + LK++ D L+ +++S ++L SK Sbjct: 750 KTKIASILAETLIDSAISVDGVKVIASRVEDYDMEALKTLGDILKDRLKSAAVILASSSK 809 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + KA + + T+D +++ N + + + + G GGGR MAQ G N +K +A+ Sbjct: 810 D-KALFVGMATKDAVEKGVNMGAVIKETCSIAE-GNGGGRAEMAQGTGKNISKVKEALEK 867 Query: 892 VASFLK 897 +K Sbjct: 868 AIEIVK 873 >gi|307265211|ref|ZP_07546770.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|326390157|ref|ZP_08211718.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] gi|306919833|gb|EFN50048.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|325993805|gb|EGD52236.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 877 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 353/909 (38%), Positives = 527/909 (57%), Gaps = 55/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + VTT Sbjct: 7 NEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L R Sbjct: 67 QRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVDR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++++Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGP SEI+FD+GE Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEKG 181 Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R+IE WNLVF QF + + LP +IDTGMGLER+AT++Q + Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVDS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D+ + + ++ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGYV Sbjct: 242 IFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I+ ++ E+ERF + Sbjct: 302 LRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFKE 361 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +L +S L +L G AFKLYDT+G PLD+ ++IL G+ +D + Sbjct: 362 TIDQGLTILQDYISELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEGY 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + LE+QR RAR+ S + I+ +L + T+F+GYD Sbjct: 421 TKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYESD------------ 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S V AIV+ E+VEEA +G V ++ D TPFYAE+GGQ+GD G + Sbjct: 467 -----------SKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDKGVLENEN 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ D +K + +ERG++ + ID +RR + NH+ATHLLH AL Sbjct: 516 ALIKVNDCKKIGDKFIHT-GTIERGLISVGDEVKAQIDVVSRRNAARNHTATHLLHKALK 574 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V ++ Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYDE 634 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA AL KY D+VRVV + +S LCGGTHV +T EI + IVSES++ A Sbjct: 635 AVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVGA 689 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A +L ++E LK + LKV ++ ++E + + + + K Sbjct: 690 GLRRIEALTGLAAIKYLGEKEEILKEASDLLKVQDKEIISKIESLQQVLKTKDKEIEQLK 749 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +++ S + + + + + DS+ LK++ D L+ K++ ++L + E Sbjct: 750 IKMASILADSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKIAAVVLASSTPE 809 Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG- 891 KA + + T+D++ + + + K + G GGGRP MAQ G N +K D+A+ Sbjct: 810 -KAIFVGMATKDVVQKGIDMGAIIKEVCK-VSEGNGGGRPDMAQGTGKNLSKVDEALNKA 867 Query: 892 ---VASFLK 897 V LK Sbjct: 868 IDIVKEQLK 876 >gi|226311489|ref|YP_002771383.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] gi|226094437|dbj|BAH42879.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] Length = 882 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 371/916 (40%), Positives = 529/916 (57%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FF + GH + PS+ L+P +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTGNQIRQMFLDFFVEKGHRIEPSAPLVPIDDPSLLWINSGVATLKKYFDGRIIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVGRT RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRITNSQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGEYFKEEAIEWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D L +T++ EDEEAF+LW K G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPELLSVTIHPEDEEAFELWNKKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAFGNDPSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q NN++ DL LI+ + +++G+KY+ V +VI DH R+ F I DG Sbjct: 234 MTSVIQGVDNNFETDLLFPLIEKTTEISGVKYKTSPEMDVALKVIADHARTVVFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYV+RR++RRA+ + LG +P + L + T MG YPE++Q + IE+ Sbjct: 294 LPSNEGRGYVIRRLLRRAVRMGKKLGVEKPFLYSLTETVGTMMGEFYPEVVQKRAFIEKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L ++ + L+G FK+YDT+G P+D+ +D + Sbjct: 354 IRAEEERFHETLNDGLAILSDMVKAAKDSGKTQLSGQDVFKMYDTYGFPVDLTEDFADEQ 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F++A+EEQR RARA + S + L + +QF+GY L Sbjct: 414 GLT-VDRDGFDKAMEEQRERARAARQDVDSMQIQG--GPLSDLTVTSQFVGYTEL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V+AI+ ++VEEA GQ V+VV QTPFYAE+GGQ+ Sbjct: 466 ------------------VATGKVEAIILDNQLVEEAEEGQTVQVVLSQTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G I D ++ ++TDVQK G VH IVE G LR + ++ + R ++ NH+ Sbjct: 508 NDEGFLISDIVKARVTDVQKGPMGQNVHSVIVEAGTLRKGDDVRAEVNREARLAITQNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS + P+ LRFD TH IT EL+ IE VN+ + NL Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVAPERLRFDFTHISSITPEELERIEAIVNEKVWANLG 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +A A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VEISNKPLAEAKAMGAMALFGEKYGDVVRVVKV-----GEYSLELCGGCHVNNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 +VSES I AG RRIEA+TG+ A L Q LK +A LK RVE + ++ Sbjct: 683 KLVSESGIGAGTRRIEAVTGRGAYQFLNQQFTTLKEVAQALKAPVLAEAPARVEGLQQQL 742 Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +++Q + + +L + + ++ +N ++ +S VD L+ ++D L+ K+ S Sbjct: 743 KEVQRENESLRAKLGNIEAASLTDKLQQVDGMNVLAARVSAVDMDNLRGMVDELKNKLGS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +I+L + + K +++ VT+DL+D +A + + A GGGG GGRP MAQ+GG + Sbjct: 803 AVIVLGAVDGD-KVNLVAGVTKDLMDQGIHAGKIIKEVATRCGGGG-GGRPDMAQAGGKD 860 Query: 882 GNKADQAIAGVASFLK 897 +K +A+ V F+K Sbjct: 861 PSKLQEALDAVVDFVK 876 >gi|299822850|ref|ZP_07054736.1| alanine--tRNA ligase [Listeria grayi DSM 20601] gi|299816379|gb|EFI83617.1| alanine--tRNA ligase [Listeria grayi DSM 20601] Length = 876 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 346/913 (37%), Positives = 514/913 (56%), Gaps = 57/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSQEVRQMFLDFFKEKGHTIEPSASLVPANDPTLLWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 ++ QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRLSNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIVWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY ED+EA +WK+ GL+ I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPEKLYVTVYPEDKEAKAIWKEKVGLADAHIVEI--EDNFWDIG-VGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGESYGNDPDDPELYPGGENERYLEIWNLVFSQFNHNPDGSYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF I+ +E++ ++Y V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPTIKETEKLANVRYGNSSETDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+L+G EP M L+P + + M S YPE+ + + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKLIGINEPFMYRLVPVVGSIMKSYYPEVSKQESFIQKI 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +RSE+ERF +TL+ GL +L+ +L + + ++G FKLYDT+G P+++ ++ Sbjct: 354 IRSEEERFHETLNEGLAILETILKEAKASGEATISGSAIFKLYDTYGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F +++QR RAR + S + L + FIGY+ Sbjct: 414 GL-AVDHEGFEAEMKQQRERAREARADVKSMQVQGEL--LATLTEPSAFIGYENTESR-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E +G++ +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SQIVYLIQNDTLVDEVKAGEEAQVIFRETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + DVQK +H VE G+L++ + L +D R+ NH+ Sbjct: 508 ADHGTIQSTSGLAYVKDVQKAPNKQNLHRIFVEEGVLKSGEEVDLRVDTYKRKSTVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + P+ LRFD +H I+ AEL +E VN+ I + +P Sbjct: 568 ATHLLHRALKNVLGEHVNQAGSLVEPERLRFDFSHFSQISEAELAEMEAAVNEKIWEQIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M ++A A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VVIEEMPIDEAKALGAMALFGEKYGDIVRVVQV-----GRYSIELCGGVHVKNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SES I AG RRIEA+TG+ A + Q+ LK A+ LK + +V+++ E + Sbjct: 683 KIISESGIGAGTRRIEAVTGEAAYRFVTEQETTLKETAAKLKTNSSEAPQKVDQLLAELK 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + + ++ V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENDSLLAKLANTESAAIFEQPEEVNGVPVIAKKVNAKDMNQLRQFVDNWKDKQLEG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++L S+E K +++ V+E ++ A L + A + GG GGG+P MAQ+GG N Sbjct: 803 VLVLA-TSEEGKVNLIAAVSEAYRSKYPAGKLIKEVAARV-GGNGGGKPDMAQAGGKNPE 860 Query: 884 KADQAIAGVASFL 896 +A+A V ++ Sbjct: 861 ALPEALAFVKEWI 873 >gi|237755762|ref|ZP_04584366.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692072|gb|EEP61076.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 876 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 363/902 (40%), Positives = 535/902 (59%), Gaps = 41/902 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL++F+ GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+ Y+ Sbjct: 4 MTADEIRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QK R GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ + Sbjct: 64 ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLKIP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L ++V++ED+EAF++W K GL KI R+ DNFWSM +TGPCGP SEI++D+GE Sbjct: 124 KEKLLVSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G +E+ RY+EIWNLVFMQ+ + K LP SIDTGMGLER+A+VLQ Sbjct: 184 KF-GSPEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVD 242 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK +IQ +E+V+G +Y + + RVI DHLR+ +FLI+DG+LPANEGRGY Sbjct: 243 SNYDTDLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ Y + L +P + + + +M +AYPELIQ + I+ +SE+E+F Sbjct: 303 VLRRIIRRALRYGKNLSIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFI 362 Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTL R + +L ++ L G+ AFKLYDT+G P+D+M++IL G D+I Sbjct: 363 KTLKRSMDILYQMIEQARKENRRHLTGEEAFKLYDTYGFPIDLMEEILKDEGFT-FDLIE 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ LEEQ+ RAR S + ++ +LK K QF+GY+ L Sbjct: 422 FHNLLEEQKERARKSW-KSQSKEIKPVYLTLKNKLPENQFVGYETLTSE----------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +S V AI++ ++V+ A G+ VE+V D TPFY E GGQ+GD G GD Sbjct: 470 -----------NSKVLAIIKGDQLVDTAKEGEDVEIVLDITPFYPEKGGQVGDRGIIEGD 518 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D Q +G+ VH V G ++ + +D + R + +H+ATHLLH AL Sbjct: 519 EFLFEVLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKVDKERRENIMRHHTATHLLHAAL 578 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS ++ + LRFD TH + +T ELK++E+ VN I +N VV + M E Sbjct: 579 RNVLGDHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYE 638 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A+ SGA A+ KY D VRV+S S LCGGTHV TG+I I+SES++ Sbjct: 639 EALKSGAMAIFEEKYADVVRVISAG------ISKELCGGTHVKRTGDIGYFKILSESAVS 692 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G RRIEA+ G +A + + +K L+ L + ++ RV ++ + ++ + Sbjct: 693 SGTRRIEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENL 752 Query: 778 KLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + +L + E+L+ + + ++ EL+ + D L++K+ +I++ E Sbjct: 753 RKKLALSNINENLNIIEKEGFKVAYVSVENLNPNELREIADHLRQKLGKSVILVASKDAE 812 Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K K + ++ V+++L + + A D+ + A +GG G GGRP AQ G + +K Q Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASAVGGSG-GGRPDFAQGGINDTSKLSQLFEEF 871 Query: 893 AS 894 Sbjct: 872 KK 873 >gi|158521281|ref|YP_001529151.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] gi|205830076|sp|A8ZY67|SYA_DESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158510107|gb|ABW67074.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] Length = 876 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 375/909 (41%), Positives = 532/909 (58%), Gaps = 46/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + R TFL++F+ GH ++ SSSL+P DPTL+F N+GMV FK +F G+EK Y Sbjct: 1 MTGNEARKTFLDYFENQGHRVVRSSSLVPQADPTLLFVNAGMVQFKRVFMGEEKRDYTTA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAWDLL + L Sbjct: 61 TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKERAIELAWDLLLNGYKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L ++V+ ED+EAF +WK GL+ +I R+ DNFWSM +TGPCGPCSEI+ D+GE Sbjct: 121 EDKLSVSVFHEDDEAFSIWKDRIGLAESRIARLGEKDNFWSMGDTGPCGPCSEIYMDRGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++EIWN+VFMQ+ +Q E LP SIDTGMGLER+ V+Q+ Sbjct: 181 KYGCGRPDCAPGCDCDRFMEIWNMVFMQYNRQASGELTPLPHPSIDTGMGLERICAVIQD 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297 + NY+ DLF +I+ E +G Y ++ +VI DH R+++FLI DG+LP+NEG+ Sbjct: 241 RDTNYETDLFIPIIRGIEAASGKTYGQAPDMDVCMKVIADHSRAAAFLIGDGVLPSNEGK 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y R LG T P + + M YPEL + I L +E+ R Sbjct: 301 GYVLRRILRRAIRYGRQLGLTRPFLSRTAGTVFEVMAEPYPELKENASFITNVLENEEVR 360 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD GL LL L + + ++ G V FKLYDT+G P+DI++D++ + + G+D+ Sbjct: 361 FSETLDNGLRLLSETLDGMAAKGESVIPGGVIFKLYDTYGFPVDIVRDVVREK-MIGLDM 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ A+ EQ++++R+ + + +L K T F+GY L Sbjct: 420 EGFDAAMAEQKAKSRSVVDFSKQP---EAYRNLSAKGMKTGFVGYAGL------------ 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A+V G +E A +GQ++E+V D TPFY +GGQ+GD G Sbjct: 465 -----------AAQATVLALVNGGSELETATAGQEIEIVTDTTPFYGASGGQMGDVGVIT 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG+ + +TD K G+ +H V G ++ ++ L +D RR + NH+ATHLLH Sbjct: 514 ADGLEITVTDTIKDPTGLVIHKGQVASGTVKKGQTISLAVDEDRRRATAANHTATHLLHA 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL I+G HV Q GS ++PD +RFD TH + A L IE VND I +N V M+ Sbjct: 574 ALGGIVGDHVKQAGSMVSPDRMRFDFTHFSMLDRATLDRIEVFVNDRIRENRAVTISEMS 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY D VRVV+V+ S LCGGTH TG+I L I+SE+S Sbjct: 634 MDQAMEQGATALFEEKYGDTVRVVAVDG-----VSKELCGGTHAQRTGDIGLFKILSEAS 688 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TG A + + Q L A LK S + R++++ E R + A Sbjct: 689 VASGVRRIEAVTGAGAVAFVQEQMGILAEAAGMLKESPAALAARIQKLLAESRTMAKEIA 748 Query: 776 KRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K L + + V ++ ++ + L+ + D L+ K+ SG+++L G Sbjct: 749 GLKTSLATASMEGPKSDDAKTLNGVKVIARTVTADNPAALRDLADRLKDKLGSGVVVL-G 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + KA +++ V+ DL RF A D+ R +A V+GG G GGRP MAQ+GGP + AI Sbjct: 808 AAADGKAFLIVSVSRDLTGRFKAGDIVREAAAVVGGKG-GGRPDMAQAGGPQPEHLEAAI 866 Query: 890 AGVASFLKK 898 + K Sbjct: 867 QKACDMIGK 875 >gi|304407565|ref|ZP_07389217.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] gi|304343516|gb|EFM09358.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] Length = 877 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 356/910 (39%), Positives = 518/910 (56%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L FF+ GH + PS+SL+P NDP+L++ N+GM P K F G+ P + Sbjct: 1 MKASEIRSKWLAFFESKGHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119 T QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT Sbjct: 61 TNSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKQWIG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RL +TVY ED EAF+ W K GL ++I ++ +NFW + E GPCGPC+EIF+D+ Sbjct: 117 FDPSRLSVTVYPEDTEAFEFWNKKIGLPEERIYKLD--ENFWDIGE-GPCGPCTEIFYDR 173 Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 G+ E ER++E+WNLVF QF LP +IDTG GLER A++ Sbjct: 174 GDKYGDLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ+ +N+D DLF+ +I + ++ + Y N + + +VI DH+R+ +F + DG+LP+N Sbjct: 234 LQDVDSNFDTDLFRPMIDRTCEIANVSYHVNADHDLALKVIADHIRTVAFAVGDGVLPSN 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV+RR++RRA+ Y + LG P + L + MG YPE+++ + IE +R+E Sbjct: 294 EGRGYVIRRLLRRAVRYGKSLGIDRPFLFELTKVVGDVMGMYYPEVVEKREFIERVIRTE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL GL LL ++S + + ++G+ AF+LYDT+G P D+ +D GL Sbjct: 354 EERFHETLSDGLTLLGALVSQVREAGKNEISGEDAFRLYDTYGFPFDLTEDYASENGLT- 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F+ A+E QR RARA G + L E ++F+GY L Sbjct: 413 VDRAGFDSAMEAQRERARAARQETGGMNVQG--GPLSELTEKSEFVGYSEL--------- 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S + AIV + +V+ A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 462 --------------TTNSKITAIVHEDSLVDIAGEGSRVLVLLDRTPFYAESGGQIGDRG 507 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 GDG L + DV K +G VHHAIV G +R S ++ R + NH+ATHL Sbjct: 508 VIQGDGFVLNVEDVTKAPQGQPVHHAIVASGTVRVGESAQASVARDLREDIVKNHTATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + D LRFD +H IT EL IE VN+ I PVV Sbjct: 568 LHKALKEVLGEHVNQAGSLVKSDSLRFDFSHFGAITEEELADIERRVNEQIWIGTPVVIE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +A A GA AL G KY D VRVV V +S LCGG HV++T +I ++ Sbjct: 628 SKAIAEAKAMGAMALFGEKYGDVVRVVQVGG-----YSIELCGGCHVANTSQIGTFKLIG 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +G+RRIEA+TG+ A +++ Q + LK A LK + +V R+E ++ + ++L Sbjct: 683 ESGIGSGVRRIEAVTGRHAYAYMEAQFDLLKQAAGLLKSNTADVPKRIEALFGQVKELGR 742 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + +L+ + + DV ++ +S L+ ++D L+ K+ S II+L Sbjct: 743 DNESLQAKLSRIEAGSLTDQAKTVGDVTILTAAVSAPSMDALRGIVDELKAKLPSAIIVL 802 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G +++ K +++ V+ D + + FNA L + +A V GGGG GGRP MAQ+GG + +K Sbjct: 803 -GAAQDDKVNLVASVSPDFVKKGFNAGKLVKEAAAVCGGGG-GGRPDMAQAGGKDASKLA 860 Query: 887 QAIAGVASFL 896 A+ + Sbjct: 861 DALKLAEELV 870 >gi|67459745|ref|YP_247369.1| alanyl-tRNA synthetase [Rickettsia felis URRWXCal2] gi|75535865|sp|Q4UJT5|SYA_RICFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|67005278|gb|AAY62204.1| Alanyl-tRNA synthetase [Rickettsia felis URRWXCal2] Length = 878 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 415/901 (46%), Positives = 565/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY DEEA WKKI+G D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYVTVYHTDEEAASYWKKIAGFRDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K R LP+ SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRAM +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRAMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKTT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G++AFKLYDT+G PLD+ +DIL R +D F + Sbjct: 365 LERGLKLLTEETETLTKGNELSGEIAFKLYDTYGFPLDLTEDILKNRD-ISVDHKRFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 424 MLAQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKEIDTQFLLISNQTPFYGESGGQMGDIGMIFSKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G ++ + +ID + R+ L I+HSATH+LH L + Sbjct: 521 IEVIDTLKYLGSIIVHKCILKKGQIKIGENANFSIDIKYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDA+ Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVDTTLMTTEDAV 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+ Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + +D LKS+ S LK ++ ++ +V I E ++L+ K Sbjct: 696 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKELEKELEKVHLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + I V + I +D+K L+ + L KK++ I++ + + + K Sbjct: 756 RLDLSIEQIEKQAEDIKGVKLIYRYIENLDNKVLRQAAENLTKKVEDLIVVYITGNND-K 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++ A +A+ + LGG GGGG+ +AQ+GG + K + Sbjct: 815 LSITVAVSKAITDKYKAGIIAKELSLFLGGSGGGGQASLAQAGGNDIGKLTNIQEKLHGL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|157804247|ref|YP_001492796.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel] gi|205830191|sp|A8F078|SYA_RICCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157785510|gb|ABV74011.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel] Length = 878 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 406/901 (45%), Positives = 566/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEVRSKFITYFKTNNHTHVPASSLIPQNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTK+F+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKKFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T+Y D+EA WKKI+G D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 NKLYVTIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEN 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEI N+VFMQ+EQ +K R LP+ SIDTGMGLERM +LQ Sbjct: 185 IYGGLPGTKDEDGDRFIEILNMVFMQYEQVDKDTRIELPQKSIDTGMGLERMTAILQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K +G ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQKIIDYTENIVKVKVKGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +++ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNIYPELKRSESFISNILEQEEIRFKTT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K + L+G++AFKLYDT+G PLD+ +DIL +D F + Sbjct: 365 LERGLKLLSEETETLTKGDKLSGEIAFKLYDTYGFPLDLTKDILK-NYDISVDHQGFKEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T ++WF +KE+YG+T+F+GY L Sbjct: 424 MLAQKERARKSWLGSGEYKTNQLWFDIKEQYGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + +++ +V + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAECKIIVLIKDNNLVNNIQETDTQFLLISNQTPFYGESGGQMGDNGTIFAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGKIHVGENANFSIDVKYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD+++SK +T+ E+ IED VN+II N V T +M EDA+ Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISYSKAVTNEEITLIEDKVNEIIRANHEVNTTLMATEDAV 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G +S LCGGTHV G+I I +ES+I AGI Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GNNSLELCGGTHVRRLGDIGCFKITNESAIAAGI 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + ++ LKS+ S LK ++ ++ +V I E + L+ K Sbjct: 696 RRIEAVCGEFVIKLMREKENLLKSVESSLKTNKNELITKVNNILERNKGLEKELEKVHLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L ++ + +I V + I +++K L+ + L KK++ I++ + + K Sbjct: 756 HLDLSIDQINKEAEEIKGVKLIYQYIENLNNKVLRQAAENLTKKVEDLIVVYI-VGNSDK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D+FNAV++A+ + LGG GGGG+ +AQ+GG + K ++ + S Sbjct: 815 LSITVAVSKAITDKFNAVNIAKELSLFLGGTGGGGQASLAQAGGHDIGKLNKIHEKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|331091263|ref|ZP_08340104.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404710|gb|EGG84249.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA] Length = 879 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 350/906 (38%), Positives = 513/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL+FF+ GH + S SL+P ND +L+ NSGM P K FTGQE P VTT Sbjct: 6 VNELRKMFLDFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRTRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIKWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY+EDEEA+++W K G++ ++I + DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYEEDEEAYEIWNKEMGIAPERIFKFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QF+ K L + +IDTGMGLER+A+++Q+ Sbjct: 181 GCGRPDCTVGCECDRYMEIWNNVFTQFDNDGKGHYEELEQKNIDTGMGLERLASIVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L + + G +Y E + V+ RVI DH+RS +F+I+DGI+P+N GRGY Sbjct: 241 SIFDVDTLKALREHICTLAGTEYGKEYSKDVSIRVITDHIRSVTFMISDGIMPSNNGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R+LG + L + YPEL + K I +R E+E+F Sbjct: 301 VLRRLLRRACRHGRILGIEGQFLTKLCETVINGSKDGYPELEEKKDAIFNVIRQEEEQFN 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L ++ + K+ L+G+ AFKLYDT+G PLD+ ++IL +G ID Sbjct: 361 KTIDQGLGILSEMIQEMTEKKETTLSGENAFKLYDTYGFPLDLTKEILEEKGF-DIDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F ++EEQR +AR + + + T+F+GYD L Sbjct: 420 FKTSMEEQRVKARKARGVSNYMGADATVYDEIDPSVTTEFVGYDHLTYD----------- 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + + EIV G+K + ++TPFYA GGQ GD G + Sbjct: 469 ------------SDITVLTTENEIVNTLSEGEKGTIFVNRTPFYATMGGQEGDKGLITTE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + K G H V +G ++ L+++ R NHSATHLL AL Sbjct: 517 HAEFAVEETVKLLGGKVGHVGKVTKGSFTVGDAVNLSVEENGRANTCKNHSATHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LGSHV Q GS +TPD LRFD H +T E+ E+ VN IA+N V+T +MN E Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFVHFSAMTPEEIAKTEELVNAEIAKNNAVITEVMNIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A+GA AL G KY + VRVVS+ G S LCGGTHV++TG I I+SE+ + Sbjct: 637 QAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVANTGMITTFKILSEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG ++ +++L A K + + +VE + E + LQ Sbjct: 692 SGVRRIEALTGDGVFAYYREMEKELNEAAKVAKATPAQLKDKVEHMLSEIKSLQSEVEAL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + L ++ + ++ + +VD L+ + D L++K+ G++++ S Sbjct: 752 KSKLAKDALGDVMNQITEVKGIKLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVIAS-SA 810 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K +++ +VT+ + +A +L + A ++GGGG GGRP+MAQ+GG N AIA Sbjct: 811 NGKVNLIAMVTDGAMEKGAHAGNLIKGIAALVGGGG-GGRPNMAQAGGKNPAGIPDAIAK 869 Query: 892 VASFLK 897 V L+ Sbjct: 870 VQEVLE 875 >gi|289549314|ref|YP_003474302.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484] gi|289182931|gb|ADC90175.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484] Length = 864 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 359/901 (39%), Positives = 516/901 (57%), Gaps = 49/901 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF++ GH + S+ LIP DPTL+F N+GMVPFKN+F G EK Y Sbjct: 1 MTGNEIRERFLSFFERKGHTRVRSAPLIPEGDPTLLFVNAGMVPFKNVFLGLEKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK AI AW+ LT+E L Sbjct: 61 VSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKREAILYAWEFLTQELGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+++VY +DEEA ++W + GL +++ R+ DNFW M E GPCGP SEI+ ++ Sbjct: 121 ENRLWVSVYKDDEEALRIWTEEVGLPEERVWRMGEEDNFWQMGEVGPCGPSSEIYVER-- 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 ER++EIWNLVFMQ+ + LP SIDTGMGLER+A+VLQ Sbjct: 179 ---------DSSEERFLEIWNLVFMQYNRDPSGHLHPLPHPSIDTGMGLERIASVLQNTP 229 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DL + ++ E++TG Y + V RVI DHLR+ +F +ADG++ +N GRGY Sbjct: 230 TNFETDLLRPILAFGEEITGKAYGQDYLTDVALRVIADHLRALTFAVADGVIFSNTGRGY 289 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG EP + + + M AYPELIQAK ++ ++ E+ERF Sbjct: 290 VLRRILRRALRFGYKLGVYEPFLYKGVDTVVRVMKDAYPELIQAKEYVKGLIKVEEERFL 349 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RG+ ++ +L K +L+G F +YDT+G PLD+++++ +GL ID+ F Sbjct: 350 QTLRRGMPAVEELLQKGEKTGVLDGKDVFTIYDTYGFPLDLLEEMAREKGLT-IDMEGFE 408 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + QR RAR + + + ++ LKE ++F+GY Sbjct: 409 REMNLQRERARK-HFKIEAKQIKPVYSHLKELGKTSRFVGYQQYSS-------------- 453 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V AIV+ G++V E G+K E+V ++TPFYAE GGQ+GDTG G Sbjct: 454 ---------FTKVLAIVKDGQLVSELREGEKGEIVIEETPFYAEGGGQVGDTGIIEGMEG 504 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D Q EG+ +H +V +G ++ ++ ID + R + NH+ATHLLH AL Sbjct: 505 VFHVEDTQSPTEGVILHIGVVTKGRIKVGDEVLAQIDAERREDIRRNHTATHLLHAALRY 564 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS ++ LRFD THS P+ E+K IE+ VN I +N PV+ M+ A Sbjct: 565 VLGDHVRQAGSLVSDKYLRFDFTHSSPLKEEEIKKIEELVNQQIMKNEPVIVEEMDYRTA 624 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I+SGA A+ KY +RVRV+S G S LCGGTHV TG+I I+S+ S+ AG Sbjct: 625 ISSGAIAIFEEKYGERVRVIS-----AGSFSKELCGGTHVDRTGDIGYFKIISQESVGAG 679 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---- 775 +RRI A TG+ A + LK LA L GN++ VE++ E + L+ + Sbjct: 680 VRRIVAKTGRWAVEEAYREHILLKELAEHLGTDPGNLLSVVEKLEERVKLLEREKSELEL 739 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 K + E L I VN ++ D L+ + D ++ K S +I L + E K Sbjct: 740 KLLQEKLKEALKKESINGVNLYWGMVENTDQSALRQMADQIRSKDSSAVIFLASVKGE-K 798 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S L+ V+++L + +AVD+ + +LGGGG GGR +AQ GG + A+ + + Sbjct: 799 LSTLVAVSKNLTHKLSAVDIVKQIGPILGGGG-GGREDLAQGGGTKPDAFPTAVEKLRAI 857 Query: 896 L 896 L Sbjct: 858 L 858 >gi|91762223|ref|ZP_01264188.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002] gi|91718025|gb|EAS84675.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002] Length = 889 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 401/913 (43%), Positives = 583/913 (63%), Gaps = 44/913 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK Y Sbjct: 4 KTLNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYVRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF +D Sbjct: 64 TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGID 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +DEEAF WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 124 KNRLYVTVYHDDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGD 183 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLER+A +LQ Sbjct: 184 HLEGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGT 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ D FK LI ++ +K +N + RVI DHLR+SSFL+A+G+LP+NEGRGYV Sbjct: 244 HDNYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRR M ++ LLG +P+ ++ L EM + YPEL +A+ LI+ETL++E+E+F Sbjct: 304 LRRIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLV 363 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 LDRG+ +L+ L + +IL G+VAFKLYDT G PLD+ +DIL + + +D F+ Sbjct: 364 LLDRGIKILNEELEKVE--KILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDL 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++E + A+ + G G + ++IWF +K++ GAT F+GY Sbjct: 421 LMKESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGY-------------------- 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 T+ +V I++ + V++ + ++ +QTPFY E+GGQ+ DTG + Sbjct: 461 ---STDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEIFE 517 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++DVQKK +F H+ V++G ++ + S+ L ID Q R + HSATHLLH AL + Sbjct: 518 FEVSDVQKKLGDLFAHYGKVKKGSVKLKDSVELKIDTQRRNNIRAYHSATHLLHEALRRV 577 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + D LRFD +H KPI+ E+K IE VN II + V TRIM ++A+ Sbjct: 578 LGEHVTQKGSLVQSDRLRFDFSHMKPISDEEMKKIEHYVNSIIEKKSEVKTRIMTPKEAV 637 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY D VRV+S+ E+G S+ LCGGTHV +T +I I+S+SSI AG+ Sbjct: 638 ENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGV 697 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEE---YRK 769 RR+EA+ + L ++ + + + ++ ++ ++ + Sbjct: 698 RRVEALRDVQLTDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKD 757 Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD-----VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + + ++D +KI D I ++ K+L+ ++D +K+I G+ Sbjct: 758 LNRQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIMDLPFKDLRKLIDEGKKEIGEGL 817 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +++ I + K + + VT+ L ++F+AV + R ++V+GG GGGGR AQ+GG +K Sbjct: 818 VIIYAI-NDNKVGLAVGVTKTLEEKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTLPDK 876 Query: 885 ADQAIAGVASFLK 897 +++ + + Sbjct: 877 IEESFENIKKLIN 889 >gi|258511993|ref|YP_003185427.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478719|gb|ACV59038.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 879 Score = 825 bits (2132), Expect = 0.0, Method: Composition-based stats. Identities = 347/912 (38%), Positives = 520/912 (57%), Gaps = 54/912 (5%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ IR F +FF + GH +LPS L+P +DPTL++ N+GM P K F G+E P Sbjct: 1 MKSLTGQEIRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEV 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+R ND++ VG T RH TFFEMLGNFSFG YFK AI AW+ LT+ Sbjct: 61 PRIVDAQKCIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +LD R+ +T++++D+EAF++W GL A +I R DNFW + E GPCGPCSEIF+D Sbjct: 117 ELDPERISVTIHEDDDEAFEVWHHRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYD 174 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +R++EIWNLVF QF + LPK +IDTG GLER+A++ Sbjct: 175 RGEAYGCGSPDCKPGCDCDRFLEIWNLVFTQFNKNADGSYSPLPKKNIDTGSGLERLASI 234 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ+ NN++ DLF+ +I + +++G Y + V+ ++I DH+R+ +F I DG+LP+N Sbjct: 235 LQDVPNNFETDLFRPIINRAAELSGRPYGRSAEDDVHLKIIADHVRTVTFAIGDGVLPSN 294 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV+RR++RRA+ R LG P + L+ + MG YPE+ + + LIE +R+E Sbjct: 295 EGRGYVIRRLLRRAVRSGRKLGVERPFLYELVAVVDRIMGDDYPEVREKRSLIERVVRTE 354 Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL G LL+ + + +L+G+ AF+LYDT+G P+D+ +I +G Sbjct: 355 EERFLQTLAAGEELLNRTIEEVKARGETVLSGEAAFRLYDTYGFPIDLTVEIAREKG-IA 413 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + LEEQR+RAR +++ +L+ ++F+GYD L Sbjct: 414 VDREGFERELEEQRARAREARQVAEGMQSQR--GALETFTEPSRFVGYDEL--------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V + + + Q G+ V+ G++ +V+ D TPFYAE+GGQ+GD G Sbjct: 463 --------------TVDATIIGLFQDGDRVDGLAIGEEGQVILDVTPFYAESGGQVGDRG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G + ++ DVQK G V V G L S+ +D RR + NH+ATHL Sbjct: 509 EIVGANGKAEVLDVQKAPHGQHVMRVRVVDGSLLQGDSVRAHVDEDFRRDIVKNHTATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + P+ LRFD +H P+T EL +E VND I ++ V R Sbjct: 569 LHKALRDVLGTHVAQAGSLVEPERLRFDFSHFGPLTDEELAEVERRVNDEIWRDHAVHIR 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A A GA AL G KY RVRVV S LCGG HV T I I S Sbjct: 629 EMDLDEAKAMGAMALFGEKYGQRVRVVQAGE------SIELCGGCHVPRTSVIGQFLITS 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I +G RRIEA+TG+ A ++E+L+ +A LK + VV R + + +E R+L+ Sbjct: 683 ETGIASGTRRIEAVTGRYAYRVAREREERLRQVADALKTNVSTVVERAQRVVQEMRELER 742 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + +A V + +S++D L+ ++D ++ ++ S +++L Sbjct: 743 ELESAKARLAHARVDELVANVETVAGVPVIRAALSDLDMDGLRQLVDEIKARVDSVVVVL 802 Query: 828 VGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K + V++D +A ++ + A V GGGG GGRP +AQ+GG + K Sbjct: 803 GSAHR-GKVQFVAYVSKDWQSRGLHAGEIVKQVAAVTGGGG-GGRPDLAQAGGRDAAKLA 860 Query: 887 QAIAGVASFLKK 898 +AI V L++ Sbjct: 861 EAIQKVGEILEQ 872 >gi|156743640|ref|YP_001433769.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] gi|205830195|sp|A7NQA5|SYA_ROSCS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|156234968|gb|ABU59751.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] Length = 905 Score = 825 bits (2132), Expect = 0.0, Method: Composition-based stats. Identities = 366/928 (39%), Positives = 522/928 (56%), Gaps = 69/928 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + ++IR FL FF++ GH +PSSSLIP NDPTL+FTNSGMV FK+ F G E+ Y Sbjct: 1 MKRLSSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 TT QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI +AW+LLTK F Sbjct: 61 TRATTAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIPMAWELLTKVF 120 Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 DL RL+ TV++ D+EA +LW +G ++++R DNFW MA+ GPCGPC Sbjct: 121 DLPVERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPERVLRFGRKDNFWVMADAGPCGPC 179 Query: 173 SEIFFDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEI G+ + G + + Y+EIWN VFMQFE+ L + S+DTGMGLE Sbjct: 180 SEITIFIGDDLKEMSAKGVNSDDPNYVEIWNNVFMQFERS---TMQPLHRPSVDTGMGLE 236 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA V+Q + YD DLF LI+ + G ++ R + DH R+ +FLIADG Sbjct: 237 RMAMVMQGVHSTYDTDLFIPLIERQLALLGADEPTYRAHVAPFRAVADHSRAVAFLIADG 296 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +LP N GR YVLRRI+RRA+ R +G+ +P + + + +MG+ YPEL + I E Sbjct: 297 VLPGNTGRSYVLRRILRRAVYQGRTVGFEKPFLADVAAVVIEQMGAVYPELRERADFILE 356 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 T+ E+ +F +TL G+ +L V+ + ++ GD AF L DT+G PLD+ Q I Sbjct: 357 TVDLEERQFLRTLSGGVSILKSVIERVRAVGGTVIPGDDAFTLKDTYGFPLDLTQKIAAE 416 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D + + +EEQR+R R + + E W + T+F GY Sbjct: 417 HGLT-VDEAGYERRMEEQRARGRRAAQFKRAADAEA-WADI--DLPPTRFTGY------- 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 L S V+A++ G+ V EAV+GQ+V++ D TPFYAE+GGQ Sbjct: 466 ----------------LGVSGSGTVQALIVAGDQVAEAVAGQQVQIALDSTPFYAESGGQ 509 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG IG R +I DVQ+ G+ VH+ +VE G + ++ +D R + +H Sbjct: 510 IGDTGVLIGPRGRARIDDVQRPVPGVIVHYGVVEEGAIAVYETVEAQVDSVRRAAIMRSH 569 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + PD LRFD TH++P+T +L+ IE VN I + Sbjct: 570 TATHLLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPVTPEQLREIERRVNAWIRADT 629 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------------HS 690 PV + + + A+ +GA AL G KY D VR+V++ +G S Sbjct: 630 PVAWQELPYQAALEAGAIALFGEKYGDVVRMVTIGCVNGNDALSPAAIAERQRAGFRMCS 689 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGGTHV +GEI L IVSESS+ AG+RRIEA+TG A + Q L ++A+ + Sbjct: 690 RELCGGTHVGRSGEIGLFRIVSESSVAAGVRRIEALTGAEAEQWVDAQIATLHNIAARVG 749 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD 805 + R+E + E ++ Q + + +L + D+ F++ + D Sbjct: 750 APPSQLGERIEALLAELKQRQRALDELHARQARSNLEGLLANVQAVGDIRFLAAQVEAPD 809 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 + L+ + D L+ K+ SG+++L + + KA +L + T DL R +A +L + A ++ Sbjct: 810 TARLREMGDWLRDKLGSGVVVLAAV-IDGKAQILAMATPDLAGRRIHAGNLVKALAPIV- 867 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGV 892 GG GGGRP MAQ+GG A+ V Sbjct: 868 GGSGGGRPDMAQAGGREVAHIPDALEHV 895 >gi|229828473|ref|ZP_04454542.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM 14600] gi|229793067|gb|EEP29181.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM 14600] Length = 921 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 337/912 (36%), Positives = 505/912 (55%), Gaps = 45/912 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +L+FF+ GH ++ S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 35 VNQLRRMYLDFFESKGHLVMKSFSLVPHNDDSLLLINAGMAPLKPYFTGQEIPPRRRVTT 94 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L+ Sbjct: 95 CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKREAIHWSWEFLTRVLKLEPD 150 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177 RLY T++ +D+EA+++W + G++ D + R + DNFW +GPCGPCSEI++ Sbjct: 151 RLYPTIFIDDDEAYEIWTREVGVAPDHVYRFGKDPETGASDNFWEHG-SGPCGPCSEIYY 209 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D+GE G EG+R++EIWN VF QF L + +IDTGMGLER+A V Sbjct: 210 DRGEKYGNGPDDVMGGEGDRFMEIWNNVFTQFNNDGHGNYTELAQKNIDTGMGLERLAVV 269 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ ++ID K + ++G Y ++ ++ R+I DH+RS++F+I+DGI+P+N Sbjct: 270 MQDVETVFEIDTMKAIRDEVCALSGKTYEANASDDISIRLITDHIRSTTFMISDGIMPSN 329 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + R+LG + M L + E YPEL + + I L E Sbjct: 330 EGRGYVLRRLIRRASRHGRMLGISGEFMARLADVVIRESRDGYPELAEKQEFIRRVLTEE 389 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + +F T+D+GL +L + L + +L+G AF+LYDT+G P+D+ +IL +G+ Sbjct: 390 ERKFNATIDQGLAMLAQLEDQLSARGERVLSGADAFRLYDTYGFPVDLTAEILEEKGMT- 448 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F A+EEQR++AR E + + ++ F+GYD L S + Sbjct: 449 YDREGFAAAMEEQRAKARGARKASNYMGKEATVYDDIDNSISSSFVGYDKLEASSKISVL 508 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + GE+V+ G + V+ D+TPFY GGQLGD+G Sbjct: 509 TTEVNPAEDKY---------------GELVDALTDGSRGTVIVDETPFYGTMGGQLGDSG 553 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ + G H + G+L+ + L +D R ++ NHSATHL Sbjct: 554 LIETAEGTFRVDETIHLLGGRIGHVGQMISGMLKVGDRVTLQVDADRRANIARNHSATHL 613 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + LRFD H +++ E++ +ED VN+ IA ++PVVT Sbjct: 614 LHRALREVLGDHVQQKGSYVDDKKLRFDFVHFSAMSTEEIRKVEDLVNERIAADIPVVTE 673 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM++EDA +GA AL G KY D VRVV + G +S+ LCGGTHV TG+I ++S Sbjct: 674 IMSQEDAKKTGAMALFGEKYGDEVRVVEM-----GDYSTELCGGTHVGRTGKIQAFKVIS 728 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E AG+RRIEA+TG ++ + +L A+ K ++V ++ + EE + L+ Sbjct: 729 EVGSSAGVRRIEALTGPAVFAYYEDIERELNEAATAAKTKPSDLVEKIGHMQEEIKGLEA 788 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K E L + +I V F++ + VD L+ + D L+ K+ GI++L Sbjct: 789 ELESMKAAAAKEALGNVEDAVKEIKGVKFLAKALEGVDMNGLRDLGDQLKAKLGEGIVLL 848 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K ++ TE +A +L + A ++GGGG GGRP+MAQ+GG N Sbjct: 849 ASA-NDGKVVLMATATEGAQKAGAHAGNLIKGIAGLVGGGG-GGRPNMAQAGGKNPAGIP 906 Query: 887 QAIAGVASFLKK 898 A+A L++ Sbjct: 907 AALAEAERVLEE 918 >gi|34222740|sp|Q8DH56|SYA_THEEB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 882 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 347/912 (38%), Positives = 509/912 (55%), Gaps = 54/912 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F+ GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P T Sbjct: 5 TGDQIRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T + L Sbjct: 64 TAQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ D+EA+ +W + GL ++I R+ NFW+ TGPCGPCSEI++D Sbjct: 120 ERLLVSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYDFYPE 179 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G ++ R+IE++NLVFM+ Q ++ R L +IDTGMGLERMA VLQ N Sbjct: 180 -KGLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPN 238 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+A+ Q G++Y+ N + +VI DH R+ LIADG+ +N GRGY Sbjct: 239 NYETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + ++RLLG + L + YP + + + +I L+ E+E+F Sbjct: 299 VLRRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFL 358 Query: 360 KTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 KTLDRG LL +LS L G AF L+DT+G PL++ Q+I +G G Sbjct: 359 KTLDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQG-IG 417 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ F + EQR R++A + E I SL ++ TQF GY+ L Sbjct: 418 VDVAEFEACMAEQRQRSQAAHETIDVTVQEGID-SLGDQLHPTQFRGYEEL--------- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ V AI+ G A +G +V+V+ + TPFYAE+GGQ+GD G Sbjct: 468 --------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRG 513 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + I DV +K + +FVH+ VERG L+ + ID RR++ +H+ATHL Sbjct: 514 YLASSDALVHIHDV-QKQKELFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHL 572 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ ++SQ GS + D LRFD +P+T EL+ IED +N I+++ T Sbjct: 573 LQAALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTY 632 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM +A A GA A+ G KY ++VRV+ + S LCGGTHV +T EI L I+S Sbjct: 633 IMALSEAKAKGAIAMFGEKYGEQVRVLDIPG-----VSMELCGGTHVHNTAEIGLFKIIS 687 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AGIRRIEAI G R +L +D ++ L K ++ R+ ++ + + Q Sbjct: 688 ESGVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQK 747 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + + + + + ++ VD + LK+ + L K+ SG ++L Sbjct: 748 ALEHLKAELALAKTQALLEQAKPVGNSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVL 807 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 K ++L+ ++D++ R +A L A+V GG GGGRP+ AQ+GG K Sbjct: 808 ATQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLA 866 Query: 887 QAIAGVASFLKK 898 +A+ S LK+ Sbjct: 867 EALELAHSRLKE 878 >gi|22299646|ref|NP_682893.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1] gi|22295830|dbj|BAC09655.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1] Length = 891 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 347/912 (38%), Positives = 509/912 (55%), Gaps = 54/912 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F+ GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P T Sbjct: 14 TGDQIRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRAT 72 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T + L Sbjct: 73 TAQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPP 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ D+EA+ +W + GL ++I R+ NFW+ TGPCGPCSEI++D Sbjct: 129 ERLLVSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYDFYPE 188 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G ++ R+IE++NLVFM+ Q ++ R L +IDTGMGLERMA VLQ N Sbjct: 189 -KGLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPN 247 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+A+ Q G++Y+ N + +VI DH R+ LIADG+ +N GRGY Sbjct: 248 NYETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGY 307 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + ++RLLG + L + YP + + + +I L+ E+E+F Sbjct: 308 VLRRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFL 367 Query: 360 KTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 KTLDRG LL +LS L G AF L+DT+G PL++ Q+I +G G Sbjct: 368 KTLDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQG-IG 426 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ F + EQR R++A + E I SL ++ TQF GY+ L Sbjct: 427 VDVAEFEACMAEQRQRSQAAHETIDVTVQEGID-SLGDQLHPTQFRGYEEL--------- 476 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ V AI+ G A +G +V+V+ + TPFYAE+GGQ+GD G Sbjct: 477 --------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRG 522 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + I DV +K + +FVH+ VERG L+ + ID RR++ +H+ATHL Sbjct: 523 YLASSDALVHIHDV-QKQKELFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHL 581 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ ++SQ GS + D LRFD +P+T EL+ IED +N I+++ T Sbjct: 582 LQAALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTY 641 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM +A A GA A+ G KY ++VRV+ + S LCGGTHV +T EI L I+S Sbjct: 642 IMALSEAKAKGAIAMFGEKYGEQVRVLDIPG-----VSMELCGGTHVHNTAEIGLFKIIS 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AGIRRIEAI G R +L +D ++ L K ++ R+ ++ + + Q Sbjct: 697 ESGVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQK 756 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + + + + + ++ VD + LK+ + L K+ SG ++L Sbjct: 757 ALEHLKAELALAKTQALLEQAKPVGNSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVL 816 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 K ++L+ ++D++ R +A L A+V GG GGGRP+ AQ+GG K Sbjct: 817 ATQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLA 875 Query: 887 QAIAGVASFLKK 898 +A+ S LK+ Sbjct: 876 EALELAHSRLKE 887 >gi|160939113|ref|ZP_02086464.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC BAA-613] gi|158438076|gb|EDP15836.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC BAA-613] Length = 887 Score = 824 bits (2129), Expect = 0.0, Method: Composition-based stats. Identities = 340/907 (37%), Positives = 509/907 (56%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI W+ LT LD Sbjct: 74 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTDVVGLDPD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G+ A++I + DNFW +GPCGPCSE+++D+GE Sbjct: 130 RLYPSVYLDDDEAFGIWNKEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEAF 188 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + +RYIE+WN VF QF+ L +IDTGMGLER+A V+Q Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ Q+ +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 249 SLFTVDTNKALLDRVCQLAHTEYQKDHETDVSLRIVTDHVKSCTFMISDGIMPSNEGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R LG + L + YPEL + + +I + L E+E+F Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAGLSETVIELSKDGYPELEEKQAMIFKVLSEEEEKFN 368 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + K ++ L+G AFKLYDT+G PLD+ ++IL RG +D Sbjct: 369 KTIDQGLSILGEMQDEMQKTGNKCLSGANAFKLYDTYGFPLDLTKEILEERGCT-VDEDG 427 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F A++EQ+ +AR + + + T+FIGYD L Sbjct: 428 FAAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSVTTEFIGYDRL-------------- 473 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V + + E+V+ GQK ++ +QTPFY GGQ GDTG + Sbjct: 474 ---------TADSRVTVLTTEEELVQALTDGQKGTIIVEQTPFYGTMGGQQGDTGVISNE 524 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D G H ++ +G+ + ++ L++ NR NHSATHLL AL Sbjct: 525 NGAFKVEDTIHLQGGKVGHVGVMTKGMFQVGENVTLSVCAHNRALTCKNHSATHLLQKAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + LRFD TH +T E+K +E+ VN I +LPVVT++M E Sbjct: 585 RKVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPDEIKKVEELVNQEIQASLPVVTQVMTLE 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D+VRVV + G S+ LCGGTHV +TG I I+SE+ I Sbjct: 645 EAKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVPNTGTIAYFKIISEAGIA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + H +E+L+ A K + + +++ + EE + L + K Sbjct: 700 AGVRRIEALTSEGLMKHYQEVEEELQEAARTAKTTPSALTSKIQSLLEEIKTLHSENEKL 759 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + L ++ + ++ ++ VD ++++ D L+ K+ G+I+L + Sbjct: 760 KSKLANDSLGDVMSQVKEVNGLKVLAARVAGVDMNGMRNLGDQLKDKLGEGVIVLA-CEQ 818 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ T+ + +A +L + A ++GGGG GGRP+MAQ+GG N D A+ Sbjct: 819 DGKVNLMATATDSAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGIDDALKK 877 Query: 892 VASFLKK 898 +++ Sbjct: 878 AVETVEE 884 >gi|329120448|ref|ZP_08249113.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327461906|gb|EGF08236.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 992 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 352/969 (36%), Positives = 512/969 (52%), Gaps = 81/969 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FFQ GH + SSSL+P +DPTL+FTN+GM FK++F G +K Y Sbjct: 31 MKTSELRQKFLDFFQSKGHTAVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 90 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ I AW+ LT + + Sbjct: 91 TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLN 150 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + + +L +TVY ED+EA+ +W + G+ A++I+RI N DNFW M +TGPCGPC Sbjct: 151 IPKEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPC 210 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D GE I GG+PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLE Sbjct: 211 TEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 270 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q +NY+IDLF+ L++A + TG + +VI DH+RS SFLIADG++ Sbjct: 271 RMAAVMQGVHSNYEIDLFQDLLKAVARETGTA-FSMEEPSLKVIADHIRSCSFLIADGVM 329 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG L+P L EMG AYPEL + + I E L Sbjct: 330 PSNEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVL 389 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDIL 405 R E+ RFG+TL++G+ L + V + + +L G+ ++ Sbjct: 390 RGEEMRFGETLEKGMGLFNQVWDAMQFAKLESLLPMDGVGEPLRLTTADGVAFTVVSRNA 449 Query: 406 CARGLAGIDII-----------SFNQALEEQRSRARAHSLGLGSGT-TEKIWFSLKEKYG 453 + + + +++ A G I S G Sbjct: 450 GNGKQIVVRPQVSGSLNESFAFNMEDVITKEKPEAHRAYGEALQGYLKNNIANSKLIMSG 509 Query: 454 ATQFIGYD------------------LLRGSKFMKEDRKVLCQKPPI------------- 482 F YD L F +E + Sbjct: 510 EHIFKLYDTYGFPYDLTADMARELGIELDEEGFEREMEAQRARARAAQNFKANAQVAYDG 569 Query: 483 -------DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + V A+ + GE V + +G+ VV D TPFYAE+GGQ+GD G Sbjct: 570 AETQFHGYDKRSLDATVLALYRDGEAVNQLNAGEAGIVVLDHTPFYAESGGQVGDVGFIF 629 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R + D QK + H + G L+ S+ +D R + NHS THL+H Sbjct: 630 SGKNRFAVEDTQKIKAAVHGHFGTLVSGSLKVGDSICAEVDNAVREAIMRNHSVTHLMHK 689 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + RFD++H + I++ E+ +E VN I N+PV M+ Sbjct: 690 ALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVETMS 749 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA SGA L G KY D VRV+++ G +S LCGGTHV+ TG+I I+SE Sbjct: 750 IEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVTRTGDIGFFKIISEGG 804 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 I AGIRR+EAITG A + Q+ +K++ + +K +V+ +++ + L+ Sbjct: 805 IAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKALEKEL 864 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 AK K +L V + + ++ I + L+ ++ L K + +I+L Sbjct: 865 AKAKAELAVHAGAKLLDNAKDLGTAKLVAAQIEAD-AAALREIVTDLTGKSDNAVILLAA 923 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + ++ + Sbjct: 924 V-NNSKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQVGTML 981 Query: 890 AGVASFLKK 898 ++++ Sbjct: 982 DSAEGWVRE 990 >gi|255284141|ref|ZP_05348696.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469] gi|255265315|gb|EET58520.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469] Length = 879 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 363/911 (39%), Positives = 515/911 (56%), Gaps = 50/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FL+FFQ GH + S SL+P ND +L+ NSGM P K FTG E P Sbjct: 1 MKQYGVNELRKMFLDFFQSKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGAEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 61 RRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY ED+EAF +W K G+ A++I R DNFW GPCGPCSEI++D Sbjct: 117 GLDADRLYPSVYLEDDEAFDIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G PG + +RYIE+WN VF QFE L + +IDTGMGLER+A V Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYIEVWNNVFTQFENDGNGNYTELQQKNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D + L + +Y+ + V+ R+I DH+RS++F+I+DGI+P N Sbjct: 236 VQDVDSIFDVDTIEALRNKVCEFAHTEYKTDEKKDVSIRLITDHIRSATFMISDGIMPTN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + + L + YPEL + K I + L E Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGISGKFLSELSATVIEGSKDGYPELEEKKDFIFKVLTQE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F KT+D+GL +L G+ S + + + L G AF LYDT+G PLD+ ++IL +G Sbjct: 356 EDKFNKTIDQGLSILSGMESKMEAEGVKTLAGRDAFTLYDTYGFPLDLTKEILEEKGYT- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+EEQR++AR + + + T+F+GYD L Sbjct: 415 IDEEGFKAAMEEQRTKARNAREVTNYMGADATVYDEIDPSVTTEFVGYDKLEY------- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S + + + EI E G+ + +QTPFYA GGQ GDTG Sbjct: 468 ----------------TSKITVLTTEKEITEAVSDGENATIFVEQTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K G H V +G+ + + L++ + R NHSATHL Sbjct: 512 VIRTADAEFEVEDTIKLLGGKVGHVGRVTKGMFKVGDEVTLSVSPKKRADTCKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LG+HV Q GS +TPD LRFD H P+T+ E+ E VN+ IA +LPVVT+ Sbjct: 572 LQKALKTVLGAHVEQKGSLVTPDRLRFDFAHFAPMTAEEIAKTEALVNEQIAASLPVVTQ 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN E+A +GA AL G KY D VRVVS+ G S LCGGTHVS+TG I IVS Sbjct: 632 IMNIEEAKKTGAMALFGEKYADDVRVVSM-----GDFSKELCGGTHVSNTGMITTFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG ++ +++L A +K + ++ R+ + EE + Q Sbjct: 687 ESGIAAGVRRIEALTGDGVFAYYHNLEQQLAEAAKAVKATPATLLDRLHHLTEELKAAQS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + L + ++ V ++ + VD L+ + D L++K+ G+I+L Sbjct: 747 EVESLKSRLAKDALGDVMDNVKEVKGVKLLAAKLEGVDMNGLRDLGDQLKEKLGDGVIVL 806 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S+L + T+ +A +L + A ++GGGG GGRP+MAQ+GG N + Sbjct: 807 ASV-NDGKVSLLSMATDGAQKQGAHAGNLIKGIAALVGGGG-GGRPNMAQAGGKNPAGVE 864 Query: 887 QAIAGVASFLK 897 A+A A L+ Sbjct: 865 DALAKAAEVLE 875 >gi|253578839|ref|ZP_04856110.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849782|gb|EES77741.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 879 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 362/911 (39%), Positives = 518/911 (56%), Gaps = 50/911 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FL+F + GH ++ S SL+P D +L+ N+GM P K FTG E P Sbjct: 1 MKKYGVNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V+T QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 61 TRVSTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY ED+EAF +W K G+ AD+I R DNFW GPCGPCSEI++D Sbjct: 117 GLDADRLYPSVYLEDDEAFDIWNKEIGIPADRIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G PG + +RY+E+WN VF QFE L + +IDTGMGLER+A V Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D L +++G +Y N+ V+ R+I DH+RS++F+I+DGI+P N Sbjct: 236 VQDVDSIFDVDTICALRNLVCEISGKEYEKNYNDDVSIRLITDHIRSATFMISDGIMPTN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + L + + YPEL + K I + L +E Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + +F KT+D+GL +L + + ++ L+G+ AFKLYDT+G P+D+ ++IL +G Sbjct: 356 ENQFNKTIDQGLRILGEMEDEMKAAGEKTLSGENAFKLYDTYGFPMDLTKEILEEKGY-D 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F + +EEQR++AR+ + + + T+F+GYD L Sbjct: 415 IDEAGFQKCMEEQRNKARSAREVTNYMGADATVYDDIDVNVTTEFVGYDHL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + + EIV + GQK V +QTPFYA GGQ+GDTG Sbjct: 466 --------------TFDSKVTVLTTETEIVNSLMEGQKGTVFTEQTPFYATMGGQVGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K G F H +E G++ T ++ L +D RR NHSATHL Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISTGETVSLKVDEAARRDTEKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LG+HV Q GS +TPD LRFD H + +T+ E+ +E VN I L V T Sbjct: 572 LQKALKTVLGNHVEQKGSLVTPDRLRFDFAHFQAMTADEIAQVEALVNKEIQAGLEVRTD 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A SGA AL G KY+ +VRVVS+ G S LCGGTHV++TG IML IVS Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVANTGNIMLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG + Q+E L A LK + +V ++ + E + L Sbjct: 687 ESGIAAGVRRIEALTGNGVLEYYKKQEELLHEAAKALKANPAEIVEKIGHLQGEVKALSS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L L ++ V ++ + VD L+ + D L+ K+ G+++L Sbjct: 747 ENESLKSKLAQGALGDVMDKVVEVKGVKLLAAKVDGVDMNGLRDLGDQLKGKLGEGVVLL 806 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ E K ++L + T+ +A +L + A ++GGGG GGRP+MAQ+GG N KA Sbjct: 807 AAVNGE-KVNLLAMATDAAQKAGAHAGNLIKAVAAIVGGGG-GGRPNMAQAGGKNPAKAQ 864 Query: 887 QAIAGVASFLK 897 +A+ A L+ Sbjct: 865 EAVDAAAGILE 875 >gi|325661656|ref|ZP_08150280.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472183|gb|EGC75397.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA] Length = 879 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 361/912 (39%), Positives = 517/912 (56%), Gaps = 50/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P Sbjct: 1 MKQYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AIQ +W+ LT+ Sbjct: 61 KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY +DEEAF++W K G+ A++I + DNFW GPCGPCSEI++D Sbjct: 117 GLDADRLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D K L + + Y+ + V+ R+I DH+RS++F+I+DGI+P N Sbjct: 236 VQDVDSIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + L + YPEL + K I L E Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKDFIFNVLTQE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F KT+D+GL +L + + + +++L+G+ AFKLYDT+G PLD+ ++IL +G G Sbjct: 356 EDKFDKTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-G 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+E+QR +AR + + + T+F+GYD L Sbjct: 415 IDEEGFQAAMEKQRVQAREARKETNYMGADATVYDEIDPSVTTEFVGYDTL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + EI E GQ+ + ++TPFYA GGQ GDTG Sbjct: 466 --------------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + K G F H V +G+ RT ++ L + + R NHSATHL Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFRTGDTVTLEVRSKERLNTCKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H +T E++++E VN+ IA+N PVVT Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTKEEIEAVEALVNEEIAKNNPVVTE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +MN E+A +GA AL G KY + VRVV++ G S LCGGTHVS+TG I IVS Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+TG ++ Q++KL A LK + N+ ++ + E + L Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K + E + +I V ++ + +VD L+ + D L++K+ G++++ Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806 Query: 828 VGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K S++ TE L +A +L + A ++GGGG GGRP+MAQ+GG N D Sbjct: 807 ASAA-GGKVSLMATATEGALKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPEGID 864 Query: 887 QAIAGVASFLKK 898 A++ L + Sbjct: 865 AALSKAKEVLAE 876 >gi|331084749|ref|ZP_08333837.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410843|gb|EGG90265.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 879 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 360/912 (39%), Positives = 516/912 (56%), Gaps = 50/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P Sbjct: 1 MKQYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AIQ +W+ LT+ Sbjct: 61 KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY +DEEAF++W K G+ A++I + DNFW GPCGPCSEI++D Sbjct: 117 GLDADRLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D K L + + Y+ + V+ R+I DH+RS++F+I+DGI+P N Sbjct: 236 VQDVDSIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + L + YPEL + K I L E Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKEFIFNVLTQE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F KT+D+GL +L + + + +++L+G+ AFKLYDT+G PLD+ ++IL +G G Sbjct: 356 EDKFDKTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-G 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+E+QR +AR + + + T+F+GYD L Sbjct: 415 IDEEGFQAAMEKQRVQAREARKETNYMGADATVYDEIDPSVTTEFVGYDTL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + EI E GQ+ + ++TPFYA GGQ GDTG Sbjct: 466 --------------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + K G F H V +G+ T ++ L + + R NHSATHL Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFGTGDTVTLEVKSKERLNTCKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H +T E++++E VN+ IA+N PVVT Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTREEIEAVEALVNEEIAKNNPVVTE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +MN E+A +GA AL G KY + VRVV++ G S LCGGTHVS+TG I IVS Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+TG ++ Q++KL A LK + N+ ++ + E + L Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K + E + +I V ++ + +VD L+ + D L++K+ G++++ Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806 Query: 828 VGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K S++ TE L +A +L + A ++GGGG GGRP+MAQ+GG N D Sbjct: 807 ASAA-GGKVSLMATATEGALKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPEGID 864 Query: 887 QAIAGVASFLKK 898 A++ L + Sbjct: 865 AALSKAKEVLAE 876 >gi|193213512|ref|YP_001999465.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] gi|193086989|gb|ACF12265.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] Length = 885 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 337/922 (36%), Positives = 497/922 (53%), Gaps = 67/922 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR +FL+FF H ++ S+ +IP DPTL+FTN+GM FK++F G+ Y Sbjct: 1 MNSREIRQSFLDFFAAKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+L+T + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTDVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +DEE+FKLW+ + + I++ DNFW M ETGPCGPCSEI D Sbjct: 121 KERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GG P + R IE+WNLVF+Q+++Q LP+ +DTGMG ER+ VLQ K+ Sbjct: 181 DGSGG-PLVNVGDHRVIELWNLVFIQYDRQADGSLQPLPQKHVDTGMGFERVTAVLQGKS 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F L + ++TG++Y + + RVI DH R+ +F ++DG +P NEGR Sbjct: 240 SNYDSDVFTPLFEKITELTGVRYTASLDSATDIAMRVIADHCRTLTFALSDGAMPGNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ YA LG EP+M ++ L MG +PEL + + +E+ +R+E+E Sbjct: 300 GYVLRRILRRAVRYAGTLGCHEPIMYKMVEVLVRTMGDVFPELEKQQPTVEKIIRAEEES 359 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL RG + + V++ ++G+ AFKLYDT G PLD+ + + G GID Sbjct: 360 FLVTLGRGTEIFNEVVAGMKTSGSTTISGEDAFKLYDTFGFPLDLTRLMAAEVGF-GIDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + EQ++RAR + + T+F+GYD L S + + Sbjct: 419 EGFEHCMTEQKTRARMDRKDKMQVQDDGGEWQWFAPEAPTEFVGYDTLETSATLTAVK-- 476 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 G ++ VV D+TPFYAE+GGQ+GD G Sbjct: 477 ------------------------------TGGDRLMVVLDRTPFYAESGGQVGDHGTIE 506 Query: 536 GDGIRLQITDVQKKAEGIFV-----------HHAIVERGILRTEMSLVLTIDYQNRRQLS 584 D RL +TD +K E + +S+ +D R Sbjct: 507 TDDYRLDVTDTRKDGELVIHFVTSARDKVRDCAVSPADLSFEGAVSVEAAVDRDRRVATE 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS +TP+ LRFD +H ++ E++ +E VN I Sbjct: 567 RNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSPEEMEQVEHEVNAQIR 626 Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + V + E+A+ GA A G KY DRVRVV V S LCGGTHV + G Sbjct: 627 KAAGVTKHADVPYEEALELGALAFFGDKYADRVRVVDVPG-----ISIELCGGTHVGNIG 681 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEE 762 +I ++ IVSESS+ AGIRRIEA+TG A + L + L+ + + LK+ G +++E Sbjct: 682 QIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRNLQEIKNLLKLKADEEAGPKIKE 741 Query: 763 IWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + +E + L + +L QL+ S +I M+ + + EL+ AL+ Sbjct: 742 LLDEKKALDKQLQESRLSGLLNQLSATLASAAEIGGCRIMTEQLDGLGGDELRQAAVALR 801 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ +L ++ + K ++ +++ + + NA L + +A + GG GGG+P +A Sbjct: 802 EQASCAAGLLCSVT-DGKVFLVGFASDEAVKLKKINAGKLVKEAAACVKGG-GGGKPELA 859 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 +GG + + +AI + +K Sbjct: 860 TAGGKDPDGIGKAIETFVASVK 881 >gi|153853058|ref|ZP_01994467.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814] gi|149753844|gb|EDM63775.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814] Length = 887 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 351/906 (38%), Positives = 514/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI W+ LT+ LD Sbjct: 74 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWTWEFLTEVVGLDPD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y +D+EAF++W K G+ A++I R DNFW GPCGPCSE+++D+GE Sbjct: 130 RLYPSIYQDDDEAFEIWNKEIGIPAERIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 188 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG E +RY+EIWN VF QF+ L + +IDTGMGLER+A ++Q+ Sbjct: 189 GCGQPGCTVGCECDRYMEIWNNVFTQFDNDGHNNYTELEQKNIDTGMGLERLACIVQDVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L + G++Y+ ++ + RV+ DH+RS +F+I+DGILP+N GRGY Sbjct: 249 SMFDIDTLKALRDHVCNMAGVEYQKDDNTDTSIRVLTDHIRSVTFMISDGILPSNSGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG ++ L + YPEL + K I + E+ +F Sbjct: 309 VLRRLLRRACRHGRLLGIKGAFLVKLAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 368 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + K+ +L+G AFKLYDT+G P+D+ +IL +GL D Sbjct: 369 KTIDQGLSILADMEEEMKKNGEAVLSGKNAFKLYDTYGFPIDLTSEILEEKGLT-YDEKG 427 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A +EQR+++ + + + +++F+GY+ L Sbjct: 428 FEEAQKEQRAKSEGTFGTHNYSGKDASVYDELDAELSSEFVGYNQLE------------- 474 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V S V A+ + E+V+ G K ++ +TPFYA GGQ D G + Sbjct: 475 ----------VESDVTAMTSETEVVDALTDGDKGTIIVAKTPFYATMGGQEADKGIICTE 524 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + DV K A G F H V +G+++ + L +D +NR NHSATHLL AL Sbjct: 525 DGEFVVEDVVKLAGGKFGHVGQVTKGMIKVGDKVTLKVDKENRALAENNHSATHLLQKAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS LRFD TH +T+ EL+ +ED VN+ I +NLPVV + M E Sbjct: 585 RMVLGNHVEQAGSLNNAQRLRFDFTHFSAMTAEELQKVEDIVNEKIRENLPVVIKNMPIE 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GAAAL G KY D VRVVS+ G S CGGTHV +TG IM I+SE+ + Sbjct: 645 EAKKTGAAALFGEKYGDIVRVVSM-----GDFSIEFCGGTHVKNTGNIMAFKILSETGVA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + Q++KL A LK + N+ +V + E + L+ Sbjct: 700 AGVRRIEALTSKGLLDYYSAQEKKLHETAKLLKATPENIEEKVSHLMNENKVLKGEVESL 759 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + + ++ V F++ + VD L+ + D L++K+ G+I+L + Sbjct: 760 KSKLAKDAMGDVMNQVEEVKGVKFLATSLEGVDMNGLRDLGDQLKEKLGEGVILLASV-N 818 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K S++ T+ + +A +L + AK++GGGG GGRP+MAQ+GG N + A+ Sbjct: 819 DGKVSLMATATDGAMKQGAHAGNLIKAVAKLVGGGG-GGRPNMAQAGGKNPAGVEDALKA 877 Query: 892 VASFLK 897 L+ Sbjct: 878 AKEALE 883 >gi|260587849|ref|ZP_05853762.1| alanine--tRNA ligase [Blautia hansenii DSM 20583] gi|260542114|gb|EEX22683.1| alanine--tRNA ligase [Blautia hansenii DSM 20583] Length = 892 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 356/905 (39%), Positives = 514/905 (56%), Gaps = 48/905 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 19 VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 78 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD + Sbjct: 79 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 134 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y+EDEEAF++W K G+ A++I R DNFW GPCGPCSEI++D+GE Sbjct: 135 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 193 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QFE + L + +IDTGMGLER+A+V+Q+ Sbjct: 194 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 253 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L ++ +Y+ + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 254 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 313 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I + L E+E+F Sbjct: 314 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 373 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + L+G+ AFKLYDT+G PLD+ ++IL +G ID Sbjct: 374 KTIDQGLNILSEMEAAMKAEGKTELSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEAG 432 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F A++EQR +AR + + + T+F+GYD L Sbjct: 433 FKAAMDEQREKARIARSTTNYMGADATVYDEIDVNVTTEFVGYDSL-------------- 478 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +S + + + EI E Q+ V +QTPFYA GGQ GD G Sbjct: 479 ---------TCTSKITVLTTEDEITEALTEDQRGTVFVEQTPFYATMGGQQGDKGVITLG 529 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D G H ++ +G+L+T + L + + R NHSATHLL AL Sbjct: 530 DAEFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQKAL 589 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LGSHV Q GS +TPD LRFD H + +T+ EL ++E+ VN I LPVVT +M+ E Sbjct: 590 KTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAAVEEIVNKEIQAALPVVTEVMSIE 649 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY + VRVVS+ G S LCGGTHVS+TG I I+SES I Sbjct: 650 EAKKVGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISESGIA 704 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG ++ ++K +A+ LK S + ++ + E + L + Sbjct: 705 AGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSENESL 764 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ E + + V ++ +++VD L+ + D L++K+ G+++L ++ Sbjct: 765 KAKMAQEAVGDVLNQVQDVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLASVA- 823 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S+L +VTE +A +L + A ++GGGG GGRP+MAQ+GG N +K +A+ Sbjct: 824 GGKVSLLAMVTEQAQKAGAHAGNLIKGMAAIVGGGG-GGRPNMAQAGGKNPDKVPEALEA 882 Query: 892 VASFL 896 A+ L Sbjct: 883 AANIL 887 >gi|303326376|ref|ZP_07356819.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] gi|302864292|gb|EFL87223.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] Length = 892 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 360/917 (39%), Positives = 515/917 (56%), Gaps = 44/917 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +L+FF ++ HE++PS LIP NDP+L+FTN+GMV FK +F G+EK Y Sbjct: 1 MLTAQEIRRRYLDFFLRHRHEIVPSGPLIPPNDPSLLFTNAGMVQFKKLFLGEEKRAYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKC+R GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK AI AW +T+E L Sbjct: 61 AASCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAIAWAWQFVTEELQL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+ ED+EA ++WK ++GL+ +IIR+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 PKEKLWVTVFREDDEAAEIWKDVAGLTDARIIRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + +R++EIWNLVF QF+Q R +L +IDTGMGLER+A V Q Sbjct: 181 EDMSCGPDCGIGKCDCDRFLEIWNLVFTQFDQAADGSRALLAAPNIDTGMGLERIAAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSSSFLIADGILP 292 K +N+D DLF+ +IQ + + G+ Y + RVI DH RS++FLIA+G+LP Sbjct: 241 GKRSNFDCDLFQEIIQYAAGLAGVAYSFSAPDTNDVDTALRVIADHSRSAAFLIAEGVLP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRR++RRA+ +A L+G EP M + + MG AYP+L+++ I+ + Sbjct: 301 SNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGEAYPDLLESADFIDRAVF 360 Query: 353 SEDERFGKT--LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E++RF T L+ + ++ G FKLYDT+G PLDI+ D+ RG Sbjct: 361 EEEQRFSLTLEKGLHLLEEELQRLEAAGQTVIPGAFCFKLYDTYGFPLDIVTDVAGKRGF 420 Query: 411 AGIDIISFNQALEEQRSRARAHSL-----GLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 D F + EQR RAR H G G+G + + L + + F+GY+ L Sbjct: 421 TA-DGSGFEAHMREQRERAREHQKKGGLLGQGAGEGDAAFKKLADDGLRSVFVGYESL-- 477 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEA 524 +S V A++ G V+ G+ V ++TPFY E+ Sbjct: 478 ---------------------TAASPVTALLDAGGVPVDHLGEGETGFAVTEKTPFYGES 516 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ GD G + +K A + VH V RG + L++D +R+ + Sbjct: 517 GGQAGDAGLLAVVSGEAGVLTARKPAPDLIVHEIEVLRGEVHLGQEATLSVDADSRQSTA 576 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ THLLH AL LG+HV Q GS + LRFD +H +T EL ++E +VN I Sbjct: 577 RNHTCTHLLHAALRRTLGTHVKQAGSLVDSRRLRFDFSHIAALTPEELAAVERDVNRAIM 636 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +LPV R M RE+A+A GA AL G KY + VRV++V E S LCGGTH+S TG+ Sbjct: 637 ADLPVAAREMPREEALAGGAMALFGEKYGETVRVLTVGCEGREPESMELCGGTHLSRTGQ 696 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 IV+E+ + AG RRIEA+TG A + Q + +LA LK G + RV+ + Sbjct: 697 AGSFLIVAETGVAAGTRRIEAVTGWNAYGLAVEQRAEAAALAGLLKSKPGQLAERVQTLQ 756 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 E +K++ K +I V ++ + V K L+ +MD ++ ++ Sbjct: 757 TEVKKMRKASEKAAAAPVTGADLLRRAEEINGVRLLAARLENVPVKALREIMDDVRSRLS 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S + + +E K +L+ V++DL RF A L + A GG G GGRP +AQ+GG Sbjct: 817 SAGVACLATVEEGKVGLLLYVSKDLHGRFTAPALIKEVAAPCGGAG-GGRPDLAQAGGTK 875 Query: 882 GNKADQAIAGVASFLKK 898 D+A A + + ++K Sbjct: 876 PEGIDEAFAVLKTLIEK 892 >gi|157826336|ref|YP_001494056.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford] gi|205830190|sp|A8GQ73|SYA_RICAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157800294|gb|ABV75548.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford] Length = 878 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 414/901 (45%), Positives = 561/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y Sbjct: 5 TTEEVRSKFITYFKTNNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQTKRPYHTAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAASCWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K R LP+ SIDTGMGLERM VLQ + Sbjct: 185 IYGGLPGTKYEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVS 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRAM +A +LG EPLM LLP L MGS YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRAMRHAHMLGSQEPLMYKLLPKLVDLMGSVYPELKRAESFISRILEQEEIRFKTT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G++AFKLYDT+G PLD+ +DIL R ID F + Sbjct: 365 LERGLKLLTEETETLKKGNELSGEIAFKLYDTYGFPLDLTEDILKNRD-ISIDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 424 MLAQKERARKAWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKKIDTQFLLISNQTPFYGESGGQMGDIGTIFAKDSD 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I H I+++G + S +ID + R+ L I+HSATH+LH L + Sbjct: 521 IEVIDTLKYLGSIIAHKCILKKGQINVGDSANFSIDIKYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T E+ SIED VN+II N V T +M EDA+ Sbjct: 581 LGQHVTQKGSLVAPTYLRFDISHSKAVTHEEITSIEDKVNEIIRDNHEVNTTLMTTEDAV 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 G AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+ Sbjct: 641 KQGVMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGSFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + +D LKS+ + LK ++ +V +V E ++L+ K Sbjct: 696 RRIEAVCGEFVIKLIREKDSLLKSIENSLKTNKNELVTKVNNTLERNKELEKELEKTHLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + I V + I +D+K L+ L K++ I++ + + + K Sbjct: 756 RLDLSIEQIEKQAEDIKGVKLIYRHIENLDNKVLRQAAANLTNKVEDLIVVYITGNND-K 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + SF Sbjct: 815 LSITVAVSKAITDKYNACIIAKELSLFLGGSGGGGQASLAQAGGSDIGKLTNIHEKLYSF 874 Query: 896 L 896 + Sbjct: 875 I 875 >gi|331083851|ref|ZP_08332960.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403276|gb|EGG82836.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA] Length = 879 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 356/905 (39%), Positives = 516/905 (57%), Gaps = 48/905 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 6 VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD + Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y+EDEEAF++W K G+ A++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QFE + L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L ++ +Y+ + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I + L E+E+F Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 360 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + L+G+ AFKLYDT+G PLD+ ++IL +G ID Sbjct: 361 KTIDQGLNILSEMEAAMKAEGKTELSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEAG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F A++EQR +AR + + + T+F+GYD L Sbjct: 420 FKAAMDEQREKARIARSTTNYMGADATVYDEIDVNVTTEFVGYDSL-------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +S + + + EI+E Q+ V +QTPFYA GGQ GD G Sbjct: 466 ---------TCTSKITVLTTEDEIIEALTEDQRGTVFVEQTPFYATMGGQQGDKGVITLG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D G H ++ +G+L+T + L + + R NHSATHLL AL Sbjct: 517 DAEFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LGSHV Q GS +TPD LRFD H + +T+ EL +E+ VN I LPVVT +M+ E Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAKVEEIVNKEIQAALPVVTEVMSIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY + VRVVS+ G S LCGGTHVS+TG I I+SES I Sbjct: 637 EAKKAGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISESGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG ++ ++K +A+ LK S + ++ + E + L + Sbjct: 692 AGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSENESL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ E + ++ V ++ +++VD L+ + D L++K+ G+++L ++ Sbjct: 752 KAKMAQEAVGDVLNQVQEVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLASVA- 810 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S+L +VTE +A +L + A ++GGGG GGRP+MAQ+GG N +K +A+ Sbjct: 811 GGKVSLLAMVTEQAQKAGAHAGNLIKGMAAIVGGGG-GGRPNMAQAGGKNPDKVPEALET 869 Query: 892 VASFL 896 A+ L Sbjct: 870 AANIL 874 >gi|229824851|ref|ZP_04450920.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC 49176] gi|229790854|gb|EEP26968.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC 49176] Length = 888 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 352/912 (38%), Positives = 512/912 (56%), Gaps = 42/912 (4%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + V+ +R FLEFF+K GH + S SL+P ND +L+ NSGM P K FTGQE P Sbjct: 1 MKSYGVNELRRMFLEFFEKKGHLKMNSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V T QKC+R G D+DNVG+T RH TFFEMLGNFSFG YFKE AI AW+ LT+ Sbjct: 61 KRVCTCQKCIRTG----DIDNVGKTARHGTFFEMLGNFSFGDYFKEEAIPWAWEFLTETV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 + RLY +VY +D EAF++W K +SA++I + DNFW +GPCGPC+EI+FD Sbjct: 117 GIPADRLYPSVYVDDNEAFEIWNKKMNISAERIFKFGKEDNFWEHG-SGPCGPCTEIYFD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G PG + +RY+E+WN+VF QF+ K L + +IDTGMGLER+A Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNVVFSQFDNDGKGNYSDLEQKNIDTGMGLERLAVA 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D L ++ KY N ++ RVI DH+RS++F+I+DGI+P+N Sbjct: 236 VQDVDSIFDVDTLLALRNKVCEIADKKYKDNEKNDISIRVITDHIRSATFMISDGIMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + +LLG ++ L A+ YPEL + + I + E Sbjct: 296 EGRGYVLRRIIRRADRHGKLLGIDGAFLVGLAKAVIAGSKDGYPELAEKQDFILNVIEQE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F KT+++GL +L+G+ + + ++G+ AFKLYDT+G P+D+ ++IL +G+ Sbjct: 356 EEKFEKTINQGLEILEGIQKDMEAKGVKTMSGEDAFKLYDTYGFPIDLTKEILEEKGM-D 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID +F QA++ Q+ AR + + + ++FIGYD + Sbjct: 415 IDEEAFKQAMKVQKDTARNARKTTSYMGADATIYEQIDPAINSEFIGYDKTEAEGKIVAL 474 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V ++ ++ I E G V+ D TPFYA GGQLGD G Sbjct: 475 VSVGSEEDG---------------EESAISEALTDGMTGAVITDVTPFYATKGGQLGDIG 519 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D A H V +G+ + + L +D +NR NHSATHL Sbjct: 520 VITVGDAVFEVKDTIPVAGSKIAHIGKVIKGMFKIGDKVTLKVDAENRMATCRNHSATHL 579 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q+GS RFD +H K +T E+K++E VN+ IA+++PV T+ Sbjct: 580 LQKALREVLGTHVEQSGSYQDAGRTRFDFSHFKAMTPEEIKAVEKLVNEKIAESIPVDTK 639 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A SGA AL G KY D VRVV + G S CGGTHV +TG I I+S Sbjct: 640 VMSIEEAKKSGAMALFGEKYGDEVRVVGM-----GDFSKEFCGGTHVKNTGMIGQFKIIS 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AGIRRIEAITG + + + A LK S +V + + + EE + LQ Sbjct: 695 ESGVAAGIRRIEAITGNNVIKYYENLENTIAEAAKMLKASPDKLVEKAKHLMEELKSLQS 754 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K + E L +I V ++ I + D EL+++ D L+ K+ G+I L Sbjct: 755 ENESLKNKAAKEALGDVMDKVVEIGGVKVLAVDIPDTDGNELRNLGDELKNKLGEGLIFL 814 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 K+ K +++ + T+ + +A +L + A ++GGGG GGRP+MAQ+GG K Sbjct: 815 ASA-KDGKVNLVAMATDGAVKAGVHAGNLIKTVAPIVGGGG-GGRPNMAQAGGKFSEKKA 872 Query: 887 QAIAGVASFLKK 898 A+ VA +KK Sbjct: 873 DAVKAVADEVKK 884 >gi|295109896|emb|CBL23849.1| alanyl-tRNA synthetase [Ruminococcus obeum A2-162] Length = 879 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 358/912 (39%), Positives = 507/912 (55%), Gaps = 50/912 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FL+F + GH ++ S SL+P D +L+ N+GM P K FTG E P Sbjct: 1 MKKYGVNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 61 TRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY +D+EAF +W K G+ A++I R DNFW GPCGPCSEI++D Sbjct: 117 GLDADRLYPSVYQDDDEAFNIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G PG + +RY+E+WN VF QFE L + +IDTGMGLER+A V Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D L +++G +Y + V+ R+I DH+RS++F+I+DGI+P N Sbjct: 236 VQDVDSIFDVDTICALRNLVCEISGKEYEKNYQDDVSIRLITDHIRSATFMISDGIMPTN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + L + + YPEL + K I + L +E Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIKGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + +F KT+D+GL +L + + ++ L+G+ AFKLYDT+G PLD+ ++IL +G Sbjct: 356 ENQFNKTIDQGLRILGDMEEEMKTAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGYT- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR +AR + + + T+F GYD L Sbjct: 415 IDEDGFQKAMEEQRVKARTSREVTNYMGADATVYDEIDVNVTTEFEGYDNLIYD------ 468 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + +IV + GQK V +TPFYA GGQ GD G Sbjct: 469 -----------------SEITVLTTEKDIVTSLMEGQKGTVFVKETPFYATMGGQEGDCG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K G F H +E G+L T ++ L ++ Q RR NHSATHL Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGYMESGMLSTGETVSLKVNEQARRDTEKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H + +T E+ E VN I LPV T Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTPDEIVEAEALVNKEIQAALPVETN 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E+A SGA AL G KY+ +VRVVS+ G S LCGGTHV +T IML IVS Sbjct: 632 IMDIEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSRELCGGTHVRNTSSIMLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEA+TG + Q+ L A LK V ++ + + + LQ Sbjct: 687 EAGVAAGVRRIEALTGNGVIEYYKKQEAMLHEAAKALKAQPAEVAEKIAHLQADVKALQS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L L + V ++ + +D L+ + D L++KI G+++L Sbjct: 747 ENESLKSKLAQGSLGDVMNQIVDVKGVKLLASRVEGIDMNGLRDLGDQLKEKIGEGVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K ++L + T+ +A +L + A ++GGGG GGRP+MAQ+GG N KA Sbjct: 807 AAV-NGGKVNLLAMATDAAQKAGAHAGNLIKGVAAIVGGGG-GGRPNMAQAGGKNPEKAQ 864 Query: 887 QAIAGVASFLKK 898 +AI A L++ Sbjct: 865 EAIDAAAGILEQ 876 >gi|317500249|ref|ZP_07958478.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087517|ref|ZP_08336451.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898345|gb|EFV20387.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330406269|gb|EGG85786.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA] Length = 880 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 352/912 (38%), Positives = 517/912 (56%), Gaps = 50/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P Sbjct: 1 MKAYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFKE AIQ W+ LT+ Sbjct: 61 KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY++D EAF++W K G+ A++I + DNFW +GPCGPCSE+++D Sbjct: 117 GLDPNRLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D K L ++ +Y E NN V+ RVI DH+RS +F+I+DGI+P+N Sbjct: 236 VQDVDSIFDVDTIKALRDHVCRLAEKEYGEEYNNDVSIRVITDHVRSVTFMISDGIMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + + L + YPEL + K I + E Sbjct: 296 EGRGYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F KT+D+GL +L ++S + +++ILNG+ AF+LYDT+G PLD+ ++IL +GL Sbjct: 356 EEQFNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F ++E QR +AR + + + ++F+GY+ L Sbjct: 415 VDEDGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNVTSEFVGYEHLTW------- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + + EI + G+ V +TPFYA +GGQ DTG Sbjct: 468 ----------------ESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K G H ++ +G++R+ +VL +D + R + NHSATHL Sbjct: 512 YIRTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS + D LRFD TH +T E+ +E VN+ IA+ V + Sbjct: 572 LQKALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIK 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A +GA AL G KY D VRVV++ G +S CGGTHV++T EIM L IVS Sbjct: 632 NMPIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEA+T + + +EKLK+ A+ LK + N+ ++ + E + L Sbjct: 687 ETGVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ ++ + ++ I VD L+ + D L++K+ G+++L Sbjct: 747 EVESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 S + K S++ T+ + + +A +L + A +GGGG GGRP+MAQ+GG N + Sbjct: 807 ASGS-DGKVSLMATATDGAMKKGAHAGNLVKAIAGCVGGGG-GGRPNMAQAGGKNPSGIQ 864 Query: 887 QAIAGVASFLKK 898 A+ L + Sbjct: 865 DALKKAEEVLAE 876 >gi|167758103|ref|ZP_02430230.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704] gi|167664000|gb|EDS08130.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704] Length = 879 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 350/906 (38%), Positives = 508/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ +I+ W+ LT LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EA+++W K G+ A++I R DNFW +GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A ++QE Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACIVQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L ++ +Y + V+ RVI DH+RS +F+I+DGI+P+NEGRGY Sbjct: 241 SMFDIDTMKALRDHVCRLAHAEYGRDEETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLL ++ L + YPEL + K I + + E+E+F Sbjct: 301 VLRRLLRRACRHGRLLDIPGEFLVELAQNVIEGSKDGYPELEEKKEFIFKVIAKEEEQFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L +++ K ++ L+G AFKLYDT+G PLD+ ++IL +G++ +D Sbjct: 361 KTIDQGLSILSDMVAETEKKGEKTLDGQNAFKLYDTYGFPLDLTKEILEEKGMS-VDEKG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A+E QR AR + + + T+F+GYD L Sbjct: 420 FKEAMEIQRKTAREAREVTNYMGADVTVYESIDPSITTEFVGYDNLSY------------ 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V + E+V+ G++ + ++TPFYA +GGQ D G Sbjct: 468 -----------ESEVTVLATDTELVDALSDGERGTIFVEKTPFYATSGGQEADKGIIRTA 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + DV K G F H V +G+++ L +D NR + NHSATHLLH AL Sbjct: 517 DGEFIVEDVVKLMGGKFGHIGHVSKGMIKVGDKAALEVDTDNRMLSANNHSATHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS + D LRFD TH +T ELK +E VN+ I L V + M E Sbjct: 577 RMVLGNHVEQAGSSVNADRLRFDFTHFSALTEEELKKVEAIVNEQIMNCLNVKVQNMPIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GAAAL G KY VRVVS+ G S CGGTHV++TG I I+SE+ + Sbjct: 637 EAKKTGAAALFGEKYGSIVRVVSM-----GDFSIEFCGGTHVANTGVITAFKILSETGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + +EKL A LK + + ++ + E + L Sbjct: 692 AGVRRIEALTSKGLLKYYDELEEKLHEAAKLLKAAPDKLTDKISHLQAENKALHSEVESL 751 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + ++ V ++ + +VD L+ + D L+KK+ GII++ + Sbjct: 752 KSKLAQDAMGDVMDQVVEVKGVKLLATKVEDVDMNGLRDLGDQLKKKLGEGIIVIASAT- 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K S++ T+ +D+ +A +L + A ++GGGG GGRP+MAQ+GG N D+AIA Sbjct: 811 DGKVSLMATATKGAIDKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGMDEAIAK 869 Query: 892 VASFLK 897 A L+ Sbjct: 870 AAEVLE 875 >gi|304321543|ref|YP_003855186.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] gi|303300445|gb|ADM10044.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] Length = 884 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 416/869 (47%), Positives = 565/869 (65%), Gaps = 32/869 (3%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++V+ IR FL FF++ HE++PS+ L+P NDPTL+F N+GMVPFKN+FTG +K Y Sbjct: 3 TSVNDIRQAFLSFFEERDHEIVPSAPLVPQNDPTLLFINAGMVPFKNVFTGADKRPYDKA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+ F L Sbjct: 63 VSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIINAWTLLTEVFGLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L +T++ D+EA LWKKI+GL ++IIRI T DNFWSM +TGPCGPCSEIF+D G Sbjct: 123 AEKLLVTIFHTDDEAASLWKKIAGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHGP 182 Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGG PGS E+G+R+IEIWNLVFMQF+QQ ER LPK SIDTGMGLER+ATVLQ Sbjct: 183 QIPGGPPGSPEEDGDRFIEIWNLVFMQFDQQPDGERLSLPKPSIDTGMGLERIATVLQGI 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NNY+ DLF+ LI AS VTG G++++ HRVI DHLR++SFLI+DG+ P+NEGRGYV Sbjct: 243 HNNYETDLFRALIDASVDVTGRPATGDDLIAHRVIADHLRAASFLISDGVTPSNEGRGYV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM YA LG +PL+ L+PAL EMG AYP+LI+ + L+++TLR E+ERF Sbjct: 303 LRRIMRRAMRYAHGLGAKDPLLTQLVPALVAEMGGAYPDLIRGQSLVQDTLRVEEERFAD 362 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 LDRGL LL L L G+ AFKLYDT+G PLD+ +D L G G+D F+ Sbjct: 363 LLDRGLKLLADETQSLTPGGTLAGETAFKLYDTYGFPLDLTEDALRRAGY-GLDQAGFDA 421 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ Q++RARA G G + E +WF +K GAT FIGY Sbjct: 422 AMAAQKARARASWQGSGDASAETVWFDVKADSGATDFIGY-------------------- 461 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + +V A+ Q GE V E+ +G+++ V +QTPFYAE+GGQ GD G A G+ +R Sbjct: 462 ---VHEEAEGVVLAMAQNGERVAESGAGEEIAFVTNQTPFYAESGGQAGDAGTAEGEAVR 518 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 L ITD +K A + VH A +++G L+ L L +D + R ++ NHSATHL+H AL Sbjct: 519 LVITDTKKGAGSLHVHQARIDKGTLKEGDVLRLKVDGKRRVRIKSNHSATHLVHAALRRH 578 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P+ RFD +H+ +T A++ +E VN II QN +M EDAI Sbjct: 579 LGDHVTQKGSFVGPESFRFDFSHNDGLTPAQIDEVEAEVNAIIRQNDAGQISLMPYEDAI 638 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 ++GA AL G KY D VRV+ + + +S LCGGTHV+ TG+I L IVSE ++ Sbjct: 639 SAGAMALFGEKYEDEVRVLRLGEDPADPARPYSMELCGGTHVARTGDIALFAIVSEGAVA 698 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG+ AR++ + + A+ LKVS ++ R+ ++ +E +KL+ Sbjct: 699 SGVRRIEAVTGEAARAYYKERAASAAAAAAALKVSIADLPARLSQLMDERKKLEKDLVAA 758 Query: 778 KLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + + + + D+ F+ ++ V +KEL+ ++ +KK + I + + E Sbjct: 759 RKKAALGGGDGPRTETVGDITFVGQVVEGVPAKELRGLIADAKKKYEKVIAAFIATA-ED 817 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVL 863 KAS+ + V++ L++++ A DL R+ L Sbjct: 818 KASLSVGVSDALIEQWPAPDLVRIGVDAL 846 >gi|227498470|ref|ZP_03928616.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21] gi|226903928|gb|EEH89846.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21] Length = 874 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 333/913 (36%), Positives = 510/913 (55%), Gaps = 59/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF+ +GH +LPS+SLIP +DPTL+ +GM PFK FTG+ KP Sbjct: 1 MKYLTGNEIRQKYLDFFKAHGHLVLPSASLIPHDDPTLLLIGAGMAPFKPFFTGKMKPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +TT QKCVR +D++NVGRT RHHT+FEMLGNFSFG YFK+ I AW+ LTKE Sbjct: 61 PRITTCQKCVRT----DDIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKEL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L +L+IT+Y +D+EA+ +W + G+ ++I+R+ DNFW + +GPCGP SEI D Sbjct: 117 ELPADKLWITIYPKDDEAYHIWHDVVGVPDERIVRL--EDNFWQIG-SGPCGPDSEIHID 173 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 G G P + R++E+WNLVF QF Q L +IDTG GLER+A+V Sbjct: 174 LGADKGCGEPTCGPGCDCGRFLELWNLVFTQFNQNADGTYTPLKHKNIDTGAGLERLASV 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q K +N++ DL +I+ + +++ KY + ++ +V+ DH RS +F+I DGILP+N Sbjct: 234 IQGKPSNFETDLIFPIIELACELSHKKYNADAKTDISLKVVADHARSLTFMIGDGILPSN 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ + RLLG + L + + G Y EL++ K I++ + E Sbjct: 294 EGRGYVLRRVLRRAIRHGRLLGIRGKFLAALADKVISMYGEHYTELVEKKEFIDKVIDME 353 Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL +G LL+ ++ +L+GD AFKLYDT G P ++ +IL +G+ Sbjct: 354 ETSFLQTLSQGTDLLNEKIAAMKKENKTVLSGDDAFKLYDTFGFPWEVTDEILQEQGMT- 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++A+ Q+ RAR + + + D Sbjct: 413 MDKEGFDKAMASQKERARKARND----------------------------KEGRPVMYD 444 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGE--IVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + L + +V A+ Q+GE ++E +G + ++ T F+AE GGQLGD Sbjct: 445 TRSLHLEGLTVDEASKEGVVAALYQEGETTPIKEGHTGDSLAIILTNTAFHAEGGGQLGD 504 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG I D + + +K +G +H VE G ++ ++ + ++ NH+AT Sbjct: 505 TGRLISDAGIFDVENTKKLPDGTTIHLGTVESGAFSVGQAVTFEVNLDRKADIARNHTAT 564 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS + PD LRFD +H P+T+ E+ +ED VN+ I + V Sbjct: 565 HLLHAALKKVLGGHVNQAGSYVGPDRLRFDFSHFSPLTAEEVSRVEDLVNEAILDAVDVQ 624 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + + A GA AL G KY VRVV+V HS LCGG HVS+T I L I Sbjct: 625 ISEEDIDKAKEMGAMALFGEKYGKIVRVVNVPG-----HSMELCGGVHVSNTSRIGLFKI 679 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 + ESS+ AG+RRIEA+TG A + + L+ + +K ++ R+E + +E + Sbjct: 680 LGESSVGAGLRRIEAVTGHGALLYTRELEALLEDASQKVKGRPNTLLSRIEALQDELKAE 739 Query: 771 Q--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825 + ++KL + K+ DV + +I EV D L+S+ D L+ K GI+ Sbjct: 740 KHHAAELEQKLVAAAAQSAGDKVKDVKGIPVLIDEVKVDDVSALRSMGDQLRDKTG-GIV 798 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L +K ++L + +++ + + +A + + +A+VL GG GGGRP MAQ+GG N K Sbjct: 799 VLFAAMAPQKVNILTMASKEAVAKGAHAGKIVKAAAQVL-GGNGGGRPDMAQAGGKNSGK 857 Query: 885 ADQAIAGVASFLK 897 +A+A ++ Sbjct: 858 IAEAMAETLKVIE 870 >gi|167037465|ref|YP_001665043.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040127|ref|YP_001663112.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|300914211|ref|ZP_07131527.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307724554|ref|YP_003904305.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|320115879|ref|YP_004186038.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|205830277|sp|B0K994|SYA_THEP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830278|sp|B0K0Q1|SYA_THEPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|166854367|gb|ABY92776.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|166856299|gb|ABY94707.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889146|gb|EFK84292.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307581615|gb|ADN55014.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|319928970|gb|ADV79655.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 877 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 356/909 (39%), Positives = 531/909 (58%), Gaps = 55/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + VTT Sbjct: 7 NEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L R Sbjct: 67 QRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVNR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++++Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGP SEI+FD+GE Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEKG 181 Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R+IE WNLVF QF + + LP +IDTGMGLER+AT++Q + Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVDS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D+ + + Q+ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGYV Sbjct: 242 IFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA + +LLG + + ++ ++ G AYPE+I K I+ ++ E+ERF + Sbjct: 302 LRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFKE 361 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +L ++ L +L G AFKLYDT+G PLD+ ++IL G+ +D + Sbjct: 362 TIDQGLTILQDYINELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEGY 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + LE+QR RAR+ S + I+ +L + T+F+GYD Sbjct: 421 TKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYES------------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +S V AIV+ E+VEEA +G V ++ D TPFYAE+GGQ+GD G + Sbjct: 466 ----------NSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILENEN 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +++ D +K + F+H +ERG++ + ID +RR + NH+ATHLLH AL Sbjct: 516 VLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKALK 574 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V ++ Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYDE 634 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA AL KY D+VRVV + +S LCGGTHV +T EI + IVSES++ A Sbjct: 635 AVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVGA 689 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A +L ++E LK + LK +V ++E + + + + K Sbjct: 690 GLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQLK 749 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +++ S + + + + + DS+ LK++ D L+ K+++ I+L + E Sbjct: 750 IKMASILANSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKTAAIVLASSTPE 809 Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG- 891 KA + + T+D++ N + + K + G GGGRP MAQ G N +K ++A+ Sbjct: 810 -KAIFVGMATKDVVQKGINMGAVIKEVCK-VSEGNGGGRPDMAQGTGKNPSKVEEALNKA 867 Query: 892 ---VASFLK 897 V LK Sbjct: 868 IDIVKEQLK 876 >gi|166030431|ref|ZP_02233260.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC 27755] gi|166029789|gb|EDR48546.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC 27755] Length = 893 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 345/906 (38%), Positives = 512/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H L S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 21 VNELRRMFLEFFESKDHLALKSFSLVPHNDKSLLLINSGMAPMKPYFTGQEIPPRRRVTT 80 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 81 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTEVVGLDPE 136 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY+ D+EA+++W K G+ A++I R DNFW +GPCGPCSE+++D+GE Sbjct: 137 RLYPSVYENDDEAWEIWNKEIGVPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 195 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG E +RY+EIWN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 196 GCGKPGCTVGCECDRYMEIWNDVFSQFNNDGHGNYSDLAQKNIDTGMGLERLACVVQDVD 255 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L ++G Y + V+ RV+ DH+RS +F+I+DGI+P+N GRGY Sbjct: 256 SMFDIDTMKALRDHVCAMSGKHYGIDHETDVSLRVVTDHIRSVTFMISDGIMPSNSGRGY 315 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG ++ L + YPEL + K I + E+ +F Sbjct: 316 VLRRLLRRACRHGRLLGIEGAFLVELAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 375 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + K+ +L+G+ AFKLYDT+G P+D+ +IL +GL D Sbjct: 376 KTIDQGLSILADMEEEMKKNGETVLSGENAFKLYDTYGFPIDLTSEILEEKGLT-YDKEG 434 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A +EQR+++ + + + AT+F+GY+ L Sbjct: 435 FEKAQKEQRAKSEGTFGTHSYTGKDATVYDELDAKLATEFVGYENL-------------- 480 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + V A+ + EIV+ G+K ++ D+T FY GGQ GD G Sbjct: 481 ---------VCDAKVTALTSEEEIVDALSDGEKGTIIVDKTTFYGTMGGQEGDIGTIKTA 531 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + A H V G+++ ++ + +D +NR + NHSATHLL AL Sbjct: 532 DGEFVVENTIHLAGTKIGHVGYVSHGMIKVGDTVSMEVDKENRNLSARNHSATHLLQAAL 591 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS + + LRFD TH ++ ELK +E+ VN+ IA+ LPVV + M E Sbjct: 592 RQVLGTHVEQAGSYVDAERLRFDFTHFSALSKEELKQVENIVNEKIAECLPVVAKNMPIE 651 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GAAAL G KY D VRVVS+ G S CGGTHVS+TG I L I+SE+ + Sbjct: 652 EARKTGAAALFGEKYGDVVRVVSM-----GDFSVEFCGGTHVSNTGVISALKIISETGVA 706 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + ++KL+ A+ +K + + ++ + E + L Sbjct: 707 AGVRRIEALTSKGLLKYYDDMEKKLQEAAALVKATPNQLSDKIRHLQAENKDLHSELESV 766 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ E ++ V ++ + +VD L+ + D L++K+ G+I+L + Sbjct: 767 KSKMAKEAMGDVSDQVTEVKGVKLIAAKVDDVDMNGLRDLGDQLKEKLGEGVIVLASAA- 825 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + T++ + + +A +L + A ++GGGG GGRP+MAQ+GG N + D AIA Sbjct: 826 GGKVSLVAMATDEAVKKGAHAGNLIKGIAGLVGGGG-GGRPNMAQAGGKNPDGIDAAIAK 884 Query: 892 VASFLK 897 V+ L+ Sbjct: 885 VSEVLE 890 >gi|302391203|ref|YP_003827023.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] gi|302203280|gb|ADL11958.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] Length = 875 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 356/907 (39%), Positives = 540/907 (59%), Gaps = 49/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL++F+ GH +LPS+ L+P NDP+L++ N+GM PFK F GQ P + Sbjct: 3 MTSKEIRQKFLDYFESKGHLILPSAPLVPQNDPSLLWINAGMTPFKPYFNGQATPPKTRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R ND+ NVG+T+RHHTFFEMLGNFSFG YFKE AI+ ++D L E +L Sbjct: 63 VTSQKCIRT----NDIGNVGKTDRHHTFFEMLGNFSFGDYFKEEAIKWSYDFLVNEIELK 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 Q RL+I++Y +DEEAF++WK G+ ++I+R+ ++NFW + TGPCGPCSEI +D G Sbjct: 119 QDRLWISIYKDDEEAFEIWKNKIGIPTERIVRMGKDENFWQIG-TGPCGPCSEIHYDLGA 177 Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + +RY E+WNLVF Q++ E LP +IDTGMGLER+A+++Q+ Sbjct: 178 EFGCSDNCDFGCDCDRYREVWNLVFTQYDYTEDGEYKTLPSKNIDTGMGLERLASIIQQV 237 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 +N++ DLF +I+ + T YE ++ +RVI DH+RS + I DG+LP+NEGRG Sbjct: 238 DSNFETDLFIPIIEFISEHTEYDYESSDEIKSAYRVIADHIRSVTLAIGDGVLPSNEGRG 297 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y++RR++RRA+ YA+ L P + ++P + MG+ Y E+ + I++T++SE+ +F Sbjct: 298 YIIRRVLRRAVRYAKKLDLKLPFLHRIVPVVVDIMGNEYTEIADKEEQIKKTIKSEEVKF 357 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TLD+G+V+L+ ++ L E++ GD F LYDT+G P ++ ++I RG ID Sbjct: 358 QETLDQGMVILEELIDELEGEGREVIPGDEVFTLYDTYGFPKELTEEIAQERGYR-IDSE 416 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A+EEQR+RARA + E +++ L+++ +F+GY Sbjct: 417 GFEEAMEEQRARARAAQKDHDWSSAEIELFKELRDEIEMPEFVGYTQPE----------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V I++ E+V+ +G++ +VV +TPFYAE+GGQ+GD G + Sbjct: 466 ------------CETEVVKIIKDNELVDSLSAGEEGQVVLTKTPFYAESGGQIGDKGALL 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D I + + D Q+KAE + H ++E G L L I R + NH+ATHLLH Sbjct: 514 SDDITVTVVDTQEKAE-LISHQVVIEAGKLSVGDKLTAKIQTDQRIYIRRNHTATHLLHQ 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG HV Q+GS +TP+ LRFD TH + ++ ELK IE+ VN +I +NL V Sbjct: 573 ALRDILGEHVDQSGSLVTPERLRFDFTHFEAVSEEELKEIEERVNQVIRKNLEVEVLKTT 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GAAAL +Y+D VRV+ + G +S LCGGTHV + GEI L I SE Sbjct: 633 LEEAKKMGAAALFSEQYDDEVRVIKI-----GDYSLELCGGTHVDAAGEINLFKITSEGG 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG+ A +++ Q++ LK A+ LK + VV ++E++ + + L+ Sbjct: 688 IAAGVRRIEAVTGKEALNYINQQEDILKEAAAALKANPEEVVEKIEKLQSKIKDLEAEVT 747 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K +L +I +N + + +D++ L+++ D +++++ SGII+L Sbjct: 748 KFKNKLADSQADEVASDIEEINGINVVLEEVEGLDAEGLRTMGDNIKEELDSGIIILASK 807 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K + +VT+DL+D +NA + A+V GGGG GGRP MAQ+GG +K D A Sbjct: 808 LGE-KVLFVSLVTDDLVDEGYNAGQIIGEVARVAGGGG-GGRPDMAQAGGSQPDKLDAAF 865 Query: 890 AGVASFL 896 + Sbjct: 866 KKARELI 872 >gi|52081222|ref|YP_080013.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52786603|ref|YP_092432.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|319644810|ref|ZP_07999043.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2] gi|59798507|sp|Q65GS5|SYA_BACLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52004433|gb|AAU24375.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52349105|gb|AAU41739.1| AlaS [Bacillus licheniformis ATCC 14580] gi|317392619|gb|EFV73413.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2] Length = 878 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 348/915 (38%), Positives = 525/915 (57%), Gaps = 58/915 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SLIP DP+L++ NSG+ K F G+ P Sbjct: 1 MKTLTSAQVRQMFLDFFKEKGHAVEPSASLIPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTDQK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +TV+ ED+EA++LW K G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPERLSVTVHPEDDEAYELWSKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEDYGNDPSDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ NYD DLF +I+A+E ++G KY +V+ DH+R+++F + DG Sbjct: 234 MVSVIQDAKTNYDTDLFMPIIKATEAISGEKYGTSAEKDTAFKVVADHIRTAAFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYV+RR++RRA+ YA+ + P M L+P + M + Y E+ + I + Sbjct: 294 LPSNEGRGYVIRRLLRRAVRYAKSININRPFMYELVPVVADIMAAFYGEVKEKADFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL GL +L V+ + I++G+ FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLHEGLAILSEVIQKEKAKGNRIISGEDVFKLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +++QR RAR +GS + +L++ ++FIGY ++ Sbjct: 414 GME-VDHEGFEREMDKQRERARQARQDVGSMQVQG--GALRDIMTESEFIGYSDIK---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + ++Q GE+V+ GQKV+ + ++TPFYAE+GGQ+ Sbjct: 467 -------------------TETKIAELLQDGELVDLVQEGQKVQFILEKTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G +++TDV+K G +H IVE G ++ MS+ + + R+ + NH+ Sbjct: 508 GDKGWVKSGDAAIRVTDVKKAPNGQHLHEGIVESGAIKKGMSVTAEVTERLRKDIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T LRFD +H +T EL+ IE VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTDSRLRFDFSHFGQVTKEELEQIETKVNEKIWASIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VQIDLKPIAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVRNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TGQ A + + E L+ A LK + V R+E + + + Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYEEMNAKLELLEQAAEVLKTNVKEVPKRIEALQSDLK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 Q + +L ++ +I + ++ ++ D L++++D L+ K+ S Sbjct: 743 DAQRENESLLAKLGNKEAGEILEKVKEIDGIKLLAEKVNAKDMNHLRTMVDDLKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + E K ++ VT+DL++R F+A L + A+ GGGG GGRP MAQ+GG Sbjct: 803 VIVLGAVQNE-KVNISAGVTKDLIERGFHAGKLVKQVAEACGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 + +A+A ++K Sbjct: 861 ERLAEALASAEEWVK 875 >gi|291550263|emb|CBL26525.1| alanyl-tRNA synthetase [Ruminococcus torques L2-14] Length = 879 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 343/896 (38%), Positives = 500/896 (55%), Gaps = 48/896 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY++D+EAF++W K G+ A++I R DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYEDDDEAFEIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG E +RY+EIWN VF QF L + +IDTGMGLER+A ++Q+ Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L ++G +Y + V+ RV+ DH+RS +F+++DGILP+N GRGY Sbjct: 241 SMFDIDTMKALRDHVCNLSGKQYGIDHETDVSLRVVTDHIRSVTFMVSDGILPSNSGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG ++ L + YPEL + K I + E+ F Sbjct: 301 VLRRLLRRACRHGKLLGIDGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + K+ ++L+G+ AFKLYDT+G P+D+ +IL +GL D Sbjct: 361 KTIDQGLAILADMEAEMEKNGEKVLSGENAFKLYDTYGFPVDLTSEILEEKGLT-YDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A EEQR+++ E + + T+F+GYD L Sbjct: 420 FKKAQEEQRAKSEGTFGTHSYTGKEVSVYDQLDAALETEFVGYDNL-------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V A+ + E+V+ G+K ++ +QTPFYA GGQ D G Sbjct: 466 ---------TFDSKVTALTTETEVVDALSDGEKGTIIVEQTPFYATMGGQEADKGVIRTA 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + D A H V +G+++ ++ L +D +NR NHSATHLL AL Sbjct: 517 DGEFVVEDCIHLAGTKVGHVGHVVKGMIKIGDAVTLEVDAKNRALTERNHSATHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LGSHV Q GS + D LRFD TH +T ELK +E+ VN+ IA L VVT+ + E Sbjct: 577 RTVLGSHVEQAGSFVNADRLRFDFTHFSAVTPEELKKVEEIVNEQIANALAVVTKNLPIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV + S CGGTHV +T EI L I+SES + Sbjct: 637 EARKTGAQALFGEKYGDVVRVVDMSG-----FSVEFCGGTHVKNTSEITALKIISESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + ++ + LK A +K + N+ ++ + E + L+ Sbjct: 692 AGVRRIEALTSEGLMNYYAEMERLLKEAAQLVKATPENLAEKITHLQAENKSLKGEVESL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ ++ V ++ + VD L+ + D L++K+ G+++L Sbjct: 752 KSKMAQSAAGDILDQVKEVKGVKLLAAQLDGVDMNGLRDLGDQLKEKLGEGVVVLASG-N 810 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ T+ + +A +L + A ++GGGG GGRP+MAQ+GG N Sbjct: 811 DGKVSLMATATDGAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGIPD 865 >gi|153814718|ref|ZP_01967386.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756] gi|145847749|gb|EDK24667.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756] Length = 880 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 352/912 (38%), Positives = 517/912 (56%), Gaps = 50/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P Sbjct: 1 MKAYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFKE AIQ W+ LT+ Sbjct: 61 KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY++D EAF++W K G+ A++I + DNFW +GPCGPCSE+++D Sbjct: 117 GLDPNRLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D K L ++ +Y E NN V+ RVI DH+RS +F+I+DGI+P+N Sbjct: 236 VQDVDSIFDVDTIKALRDHVCRLAEKEYGEEYNNDVSIRVITDHVRSVTFMISDGIMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + + L + YPEL + K I + E Sbjct: 296 EGRGYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F KT+D+GL +L ++S + +++ILNG+ AF+LYDT+G PLD+ ++IL +GL Sbjct: 356 EEQFNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F ++E QR +AR + + + ++F+GY+ L Sbjct: 415 VDEDGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNVTSEFVGYEHLTW------- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + + EI + G+ V +TPFYA +GGQ DTG Sbjct: 468 ----------------ESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K G H ++ +G++R+ +VL +D + R + NHSATHL Sbjct: 512 YIRTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS + D LRFD TH +T E+ +E VN+ IA+ V + Sbjct: 572 LQKALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIK 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A +GA AL G KY D VRVV++ G +S CGGTHV++T EIM L IVS Sbjct: 632 NMPIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEA+T + + +EKLK+ A+ LK + N+ ++ + E + L Sbjct: 687 ETGVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ ++ + ++ I VD L+ + D L++K+ G+++L Sbjct: 747 EVESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 S + K S++ T+ + + +A +L + A +GGGG GGRP+MAQ+GG N + Sbjct: 807 ASGS-DSKVSLMATATDGAMKKGAHAGNLVKAIAGCVGGGG-GGRPNMAQAGGKNPSGIQ 864 Query: 887 QAIAGVASFLKK 898 A+ L + Sbjct: 865 DALKKAEEVLAE 876 >gi|239948196|ref|ZP_04699949.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922472|gb|EER22496.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes scapularis] Length = 878 Score = 818 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 414/901 (45%), Positives = 563/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAA 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K R LP+ SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG +RVI DHLR+SSFLIADG++P+NEGR YVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFFYRVIADHLRASSFLIADGVIPSNEGRSYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+++DIL R +D F + Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLIEDILKNRD-ISVDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKEIDTQFLLISNQTPFYGESGGQMGDIGTIFAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDA+ Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEINLIEDKVNEIIRDNHEVNTTLMATEDAV 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+ Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRCTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + +D LKS+ S LK ++ ++ +V I E RKL+ K Sbjct: 696 RRIEAVCGEFVIKLMREKDNLLKSVESSLKTNKNELITKVNNILERNRKLEKELEKTHLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 756 SLDLSIEQIEKQAEQITGIKLLHKKVGNIDNKILRQAAENLTKKLEDLIVVYIAEGI-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 815 LSITVAVSKAITDKYNAGIIAKELSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|86606529|ref|YP_475292.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab] gi|123738092|sp|Q2JTG8|SYA_SYNJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86555071|gb|ABD00029.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab] Length = 883 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 351/907 (38%), Positives = 520/907 (57%), Gaps = 50/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + ++IR FL+F+ + GH++LPS+SL+P DPT++ T +GM+PFK IF G + P Y VT Sbjct: 6 SGAAIRQAFLDFYAQRGHQVLPSASLVPE-DPTVLLTIAGMLPFKPIFLGHQDPQYPRVT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F L Sbjct: 65 TAQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWELVTEVFGLPP 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ EDEEAF LW+ G+ +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 121 ERLVVSVFREDEEAFALWRDAIGIPPHRIRRMGEEDNFWAAGPTGPCGPCSEIYYDFKPE 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G + R++EI+NLVFM+ + ++ L + +IDTG+GLER+A VLQ N Sbjct: 181 L-GDEQIDLGDDSRFLEIYNLVFMELNRDSEGRLTPLARQNIDTGLGLERLAQVLQGVPN 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL ++Q + ++ + Y V+ +VI DH R+ LIADG++P+N RGY Sbjct: 240 NYETDLIFPIVQKAAEIARVDYFQASPEQKVSLKVIGDHARAVMHLIADGVIPSNVDRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RLLG EP + ++ +AYPE+ + + +I+ L+ E+E+F Sbjct: 300 VLRRLIRRMVRHGRLLGIGEPFTLPVVETAIQLAEAAYPEVREREAVIKAELQREEEQFL 359 Query: 360 KTLDRGLVLLDGVLSHLG---KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KTL+RG LL + +++ + ++G AFKL+DT+G PL++ Q+I RG + +D+ Sbjct: 360 KTLERGERLLFDLFANVTASGAPKQISGADAFKLFDTYGFPLELTQEIAQERGFS-VDVQ 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F Q +E+QR RARA L + L E T+F+GY Sbjct: 419 GFEQEMEKQRQRARAAHQTLDVTA-QGSLDELAEFLIETEFLGYSQ-------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + +V+A++ +G+ V + +GQ V+VV D+TPFYAE+GGQ+GD G G Sbjct: 464 ---------SSARGVVEALLVEGKSVPQVEAGQSVQVVLDRTPFYAESGGQIGDRGYLAG 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+ +++ DVQK+ + +FVH VERGILR + ID RR+ +H+ATHLL A Sbjct: 515 DGVLVRVEDVQKRGD-LFVHFGWVERGILRVGDPVQAQIDLACRRRAQAHHTATHLLQAA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ++ +SQ GS + D LRFD T S+P+T EL+ +ED VN IA+ P IM Sbjct: 574 LKKVVDPSISQAGSLVAFDRLRFDFTLSRPLTPEELQQVEDLVNTWIAEAHPAQVSIMPL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +A A GA A+ G KY VRVV S LCGGTHVS+T EI L I+SES + Sbjct: 634 AEAKARGAIAMFGEKYGAEVRVVDFPG-----VSMELCGGTHVSNTAEIGLFKIISESGV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA+ G +L +D ++ L++ K + RV + E + Q + Sbjct: 689 AAGIRRIEAVAGPAVLEYLNERDSVVRELSAQFKAKPQEIPERVAALQAELKAAQRALEE 748 Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + QL + + ++ ++ + + LK+ + L K+ G ++L + Sbjct: 749 ARSQLALLQAERLLPQAVAVGNLQILAAELGSTPPEALKTAAEHLLHKLGEGAVVLGSVP 808 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++ + + A AK+ GGGG GGRP++AQ+GG K QA+ Sbjct: 809 EAGKVSLVAAFSPAVQKLGLKAGSFIGEIAKLTGGGG-GGRPNLAQAGGKQPEKLAQALQ 867 Query: 891 GVASFLK 897 L+ Sbjct: 868 VAQERLQ 874 >gi|237739614|ref|ZP_04570095.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31] gi|229423222|gb|EEO38269.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31] Length = 867 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 331/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 DKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K NN++ DL +++ + ++TG +Y + +VI DH R+ +FL+ DG++P+NE Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+V+FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEVSFKLYDTYGFPYELTEEIAEERGVTVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +K+G T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYEKTEDEATLLSSR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 EA G K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H +E+G + L ++ R + NH+ATHLL Sbjct: 504 IYSDNFSAKVLDV-QKQKDIFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + PD LRFD +H + +T+ +L IE+ VN+ I + + VV Sbjct: 563 HKALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY + VRVV V S+ LCGGTH+ + +I L IVSE Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVSG-----FSTELCGGTHIDNIAKIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + + LK + LK S NVV +VE+ E + + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLAEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDAEKA 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K ++ + + +I + + + +L++++D ++ + I++L Sbjct: 738 LESLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K S + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + +K A Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854 Query: 889 IAGVASFLK 897 + + ++ Sbjct: 855 FKEIRAIIE 863 >gi|163781728|ref|ZP_02176728.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159882948|gb|EDP76452.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 873 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 354/903 (39%), Positives = 524/903 (58%), Gaps = 48/903 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF++ GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y Sbjct: 4 SAHEIRELFLSFFERKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGVEKRPYTRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFKE AI+ AW+ +T L + Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKESAIEYAWEFVTGTLKLPE 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +DEEA+++W + G+ +++I ++ DNFW M ETGPCGP SEI+ D+GE Sbjct: 124 EKLYVSVYRDDEEAYRIWSEKVGVPSERIWKLGDEDNFWQMGETGPCGPSSEIYVDRGEE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G ERY+EIWNLVFMQ+ + K LPK +IDTGMGLER+A+VLQ Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERVASVLQNTKT 235 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NY+ID+ LI+ E V+G +Y + V RVI DHLR+ F I+DG+LP+NEGRGYV Sbjct: 236 NYEIDIIYPLIEFGEGVSGHRYGESPDTDVALRVIADHLRALIFAISDGVLPSNEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RRI+RRA+ + LG EP + + + M YPEL ++ ++ +R E+ERF + Sbjct: 296 IRRILRRALRFGYKLGVEEPFLNRGIDLVVDIMKDPYPELDMSREFVKGVVRGEEERFIR 355 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ ++ ++ + + L G+ FK YDT+G PLD++ +I RGL IDI F Sbjct: 356 TLKAGMQAVEELIERAKEEGRDTLKGEEVFKAYDTYGFPLDLIDEIARERGLK-IDIAGF 414 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + +E+QR RAR + + + ++ LK+ ++F+GY+ Sbjct: 415 QEEMEKQRERARK-HFKVETKKVKPVYQHLKDIGKTSEFVGYEHYEY------------- 460 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + +V+ E+V E G++ E++ +TPFY E GGQ+GDTG D Sbjct: 461 ----------ETELMGVVKGEELVSELSEGEEAELILRETPFYPERGGQVGDTGVIESDR 510 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ D Q +G+ VH + +G LR +V +D + R + NH+ATHLLH AL Sbjct: 511 ALFKVEDTQSPVDGVIVHRGKLLKGTLRVGDRVVARVDRERREDIMRNHTATHLLHAALK 570 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + LRFD TH + +T ELKSIE+ VN+ I +N+PV M+ + Sbjct: 571 NLLGEHVRQAGSLVADRYLRFDFTHFEALTREELKSIEELVNEKIRENMPVQVNEMDYQS 630 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ SGA A+ KY D VRV+S G S LCGGTHVS TG+I I+SESS+ A Sbjct: 631 ALRSGAVAIFEEKYGDTVRVIS-----AGEFSRELCGGTHVSRTGDIGYFKILSESSVGA 685 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RR+ A TG+ A + L+ +A L + V+ R+E + E ++ + ++ + Sbjct: 686 GVRRLIAQTGRWAVETAFREHTLLEDVAQSLNAKEEEVLSRLESLKSELKEKEREISRLR 745 Query: 779 LQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + ++ + V ++EL+++ D L+ K ++ L+ K+ Sbjct: 746 QELLKFQIETSVKREEVGEFTLFWGKFKGVGAEELRNLADMLRHKTGKDVVFLLS-EKDG 804 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S ++ V+++ DR A L + + L GGG GGR +AQ GG N ++A+ + + Sbjct: 805 KLSTVVAVSKETTDRVKANQLIKELGRALKGGG-GGREDLAQGGGSNPGGFEEAVKILRN 863 Query: 895 FLK 897 LK Sbjct: 864 RLK 866 >gi|300868714|ref|ZP_07113325.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506] gi|300333275|emb|CBN58517.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506] Length = 879 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 350/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL+F+ + GH++LPS+SL+P DPT++ T +GM+PFK IF GQ P T Sbjct: 9 SGSEIRQKFLDFYAQRGHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRSPQSPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI AW+L T+ F L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKQAIAWAWELCTEVFGLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L I+V+ ED+EAF LW K G+ +I R+ DNFW TGPCGPCSEI++D Sbjct: 124 ENLVISVFREDDEAFDLWAKEIGIPPQRIQRMGEEDNFWVSGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IEI+NLVFMQ+ + L +IDTGMGLERMA VLQ+ N Sbjct: 184 K--GDDIDLEDDTRFIEIYNLVFMQYNRDAAGNLTPLQNQNIDTGMGLERMAQVLQKVPN 241 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +++ + ++ + Y + + +VI DH+R+ +IAD I +N GRGY Sbjct: 242 NYETDLIFPIVKTAAEIARIDYSQADENTKISLKVIGDHIRAVVNMIADEIRASNIGRGY 301 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ + RL+G + + AYP + Q I+ L E+ F Sbjct: 302 VLRRLIRRAVRHGRLIGIEGGFITKVAETAIALCEDAYPNVRQRSAAIQAELEREEANFL 361 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TL+RG LL ++ L + ++G AF LYDT+G PL++ Q+I +GL +D+ Sbjct: 362 RTLERGEKLLAEIIDRLQQQGKNQIDGQDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEG 420 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F QA+EEQR+R + + T + L E AT+F+GY L + Sbjct: 421 FEQAMEEQRNRGKDAHETIDL-TVQGSLDKLAENIHATEFVGYKQLSSNV---------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 VK I+ G+ VEEA +++V+ +QTPFYAE+GGQ+GD G GD Sbjct: 470 -------------QVKVILVNGKSVEEASEESEIQVILNQTPFYAESGGQIGDRGDLSGD 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I ++I DV KK FVH +ERG LR S+ +D RR++ NHSATHLL AL Sbjct: 517 SILVKIEDV-KKESDFFVHFGRIERGTLRVGDSMTAQVDNSRRRRVQANHSATHLLQAAL 575 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+ + +SQ GS + D LRFD + IT+ EL+ IED +N IA+ M Sbjct: 576 KQIVDNSISQAGSLVDFDRLRFDFNCPRSITAEELQKIEDLINSWIAEAHLAEIAQMPIA 635 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA A+ G KY D VRV+ S LCGGTHVS+T EI L IVSE+ I Sbjct: 636 EAKKKGAVAMFGEKYGDVVRVIDFPG-----VSMELCGGTHVSNTAEIGLFKIVSETGIS 690 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +GIRRIEA++GQ +L +D+ ++ L K + R+ + E + Q Sbjct: 691 SGIRRIEAVSGQAVLDYLNVRDKVVRDLGDRFKAKPEELPNRITNLQNELKANQKELEAL 750 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + S + + + + +VD++ LK+ + LQ+K+ + ++L + + Sbjct: 751 KSELAIAKSDQLLSSAESVGEFKIIIAELGDVDTEALKTAAERLQQKLGNAAVVLASVPE 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + D+ + A AK+ GGGG GGRP++AQ+GG + +K +A+ Sbjct: 811 ADKVSLVAAFSADVNKKGLQAGKFIGQIAKICGGGG-GGRPNLAQAGGRDASKLKEALES 869 Query: 892 VASFL 896 + L Sbjct: 870 ARNLL 874 >gi|86608988|ref|YP_477750.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123751690|sp|Q2JLC4|SYA_SYNJB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86557530|gb|ABD02487.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 884 Score = 817 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 354/911 (38%), Positives = 518/911 (56%), Gaps = 54/911 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + ++IR TFL+F+ + GH++LPS+SL+P DPT++ T +GM+PFK IF GQ P Y VT Sbjct: 6 SGAAIRQTFLDFYAQRGHQVLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRDPEYPRVT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F L Sbjct: 65 TAQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTEVFGLPP 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ EDEEAF LW+ G+ A +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 121 ERLVVSVFREDEEAFALWRDEIGIPAHRIQRMGEADNFWAAGPTGPCGPCSEIYYDFKPE 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R++EI+NLVFM+ + ++ L K +IDTG+GLER+A VLQ N Sbjct: 181 L-GDERIDLEDDSRFLEIYNLVFMELNRDSEGHLMPLAKQNIDTGLGLERLAQVLQGVPN 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ + + G+ Y N ++ +VI DH R+ LIADG+LP+N RGY Sbjct: 240 NYETDLIFPIIQTAAGIAGLNYSKANPEQQISLKVIGDHARAVMHLIADGVLPSNVDRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RLLG EP + ++ +AYP++ + + LI+ L+ E+E+F Sbjct: 300 VLRRLIRRMVRHGRLLGIGEPFTIPVIETAIQLAEAAYPQVRERETLIKTELQREEEQFL 359 Query: 360 KTLDRGLVLL-------DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 KTL+RG LL + + ++G AFKL+DT+G PL++ Q+I G + Sbjct: 360 KTLERGERLLLDLFTAVESSRRDSSSPKQISGADAFKLFDTYGFPLELTQEIAQEHGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ F Q +E+QR RARA + + L + T+F+GY Sbjct: 419 VDLEGFEQEMEKQRQRARAAHQTIDLTA-QGSLDELADFLSQTEFLGYSQ---------- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + +V+A++ +G+ V + +GQ V+VV D+TPFYAEAGGQ+GD G Sbjct: 468 -------------SSARGVVEALLVEGKSVPQVEAGQAVQVVLDRTPFYAEAGGQIGDRG 514 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 GDG+ ++I DVQK+ + +FVH VERGILR + ID RR+ +H+ATHL Sbjct: 515 YLSGDGLLVRIEDVQKQGD-LFVHFGRVERGILRVGDPVQAQIDLACRRRAQAHHTATHL 573 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL I+ + Q GS + D LRFD T S+P+T EL+ IE+ VN IA+ Sbjct: 574 LQAALKRIVDPSIGQAGSLVAFDRLRFDFTLSRPVTPEELEQIENLVNTWIAEAHAAQVA 633 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM +A A GA A+ G KY VRV+ S LCGGTHV++T EI L I++ Sbjct: 634 IMPLAEAKARGAVAMFGEKYGAEVRVIDFPG-----VSMELCGGTHVNNTAEIGLFKIIA 688 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AGIRRIEA+ G +L +D ++ L++ K + RV + E + Q Sbjct: 689 ETGVAAGIRRIEAVAGPAVLEYLNERDRVVRELSAQFKAKPQELPERVAALQAELKAAQK 748 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + QL + +AD+ + + + LK+ + L K+ G ++L Sbjct: 749 ELEEVRSQLALLQAEGLLAQAVAVADLKVLVAELGSTTPEALKTAAEHLLHKLGEGAVVL 808 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S++ + + A AK+ GGGG GGRP++AQ+GG K Sbjct: 809 GSVPEAGKVSLVAAFSPAVQQLGLKAGSFIGEIAKLTGGGG-GGRPNLAQAGGKQPEKLA 867 Query: 887 QAIAGVASFLK 897 +A+ L+ Sbjct: 868 EALQVARERLQ 878 >gi|254469063|ref|ZP_05082469.1| alanyl-tRNA synthetase [beta proteobacterium KB13] gi|207087873|gb|EDZ65156.1| alanyl-tRNA synthetase [beta proteobacterium KB13] Length = 873 Score = 817 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 370/913 (40%), Positives = 539/913 (59%), Gaps = 57/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL FF++ GH ++ SSSL+P +DPTL+F N+GM FK+ F G +KP Y Sbjct: 1 MKSLTSNQIREIFLNFFREKGHTVVSSSSLVPSDDPTLLFANAGMNQFKDFFLGYKKPKY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ F Sbjct: 61 TTATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIQYAWELLTERF 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPC 172 + +L +TVY ED EA+ +WK + + A+KII+I DNFW M +TGPCGPC Sbjct: 121 QIPAEKLLVTVYHEDTEAYDIWKNVIKIPAEKIIKIADKSEKYISDNFWMMGDTGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G IPGG PGS E+G+R+IEIWNLVFMQF + E LPK S+DTGMGLE Sbjct: 181 SEIFYDHGADIPGGPPGSEDEDGDRFIEIWNLVFMQFNRNENGEMEALPKPSVDTGMGLE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY+IDLF++LI + Q K ++ + +VI DH+RS +FLI DG+ Sbjct: 241 RISAVLQSVHSNYEIDLFQNLIHDAAQALKCKDLSHS--SLKVIADHIRSIAFLINDGVQ 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+N+GRGYVLRRI+RRA+ + LG TE +M +L +L M AYPEL+ IE+T Sbjct: 299 PSNDGRGYVLRRILRRAIRHGYKLGATESFLMPILNSLAKNMQEAYPELLTNIKKIEKTT 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+++F +T+ G+ +L+ ++ K +L+G VAFKL+DT+G P+D+ DI Sbjct: 359 LQEEDKFFETIANGMSILEQEINLTKKNKSTMLSGSVAFKLHDTYGFPIDLTADICREHN 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + ID F+Q + EQ+++A+ S S+ T+F+ Y Sbjct: 419 IT-IDQAGFDQDMAEQKNKAKNASQFKAKD-------SIVIDIDPTKFLAYTH------- 463 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 N S +++I+ E E + +V ++PFYAE+GGQ+G Sbjct: 464 ----------------NEEFSTIESIILNNEPAVEVSANSTCNLVVKESPFYAESGGQVG 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + D QK G+ +H + RG L+ + ++ +D+ R + NHSA Sbjct: 508 DTGRIFNDQAEFVVHDTQKLPNGVILHIGELVRGQLKIKDPVLCQVDHIRRDSIKRNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL TILG HV Q GS + RFD +HS ++ E++ +E VN+ I QN P Sbjct: 568 THLLHKALKTILGDHVEQKGSLVNEFRTRFDFSHSSALSETEIQQVEQIVNNEILQNNPT 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +M + A SGA L G KY+D VRV+++ S LCGGTHV++TG+I L Sbjct: 628 SAEVMALDKAKKSGAMMLFGEKYDDEVRVLTIGN------SKELCGGTHVNATGDIGLFK 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++ES I +G+RRIEA TG + Q++ L + A LK ++ +V +++++ ++ + Sbjct: 682 ILNESGISSGVRRIEATTGVSLIQIIDKQNQLLNATAKELKTTKDDVAEKIKQVIDQVKT 741 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + A+ K ++ I +S I ++ +L++++D L+ I SGI Sbjct: 742 QEKTIAQLKQKITNASKNDLLDQIEVIDGTKVLSTNIDNMEIPQLRALIDDLKNNIGSGI 801 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L I++ K ++ + VT+D+ ++F+A +A A ++ GG GGG+P MA +GG N N Sbjct: 802 IILATINQ-GKINIAVGVTKDITNQFHAGKIAGQLANMV-GGNGGGKPDMAMAGGQNIND 859 Query: 885 ADQAIAGVASFLK 897 +A+ + L Sbjct: 860 LPEALIKIKKLLN 872 >gi|118594479|ref|ZP_01551826.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181] gi|118440257|gb|EAV46884.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181] Length = 872 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 362/913 (39%), Positives = 528/913 (57%), Gaps = 56/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF+ GH ++ SSSL+P DPTL+FTN+GM FK++F G+E+ Y Sbjct: 1 MLSSQHIRAQFLKFFEDKGHHVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGEEQRNYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F + Sbjct: 61 AASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWELLTEVFAI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L +TVY +D EA+ +W+K G+ +KII+I N DNFW M +TGPCGPCS Sbjct: 121 PKEKLLVTVYADDNEAYSIWEKDIGIPTEKIIKIGDNKGSQYASDNFWMMGDTGPCGPCS 180 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG+PGS +E+G+R+IEIWNLVFMQF + +K LPK S+DTGMGLER Sbjct: 181 EIFYDHGDTIEGGVPGSHNEDGDRFIEIWNLVFMQFNRDDKGVMHPLPKPSVDTGMGLER 240 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + +LQ+ +NYDID+F+ LI + ++ K + +V+ DH+R+++FLI DG+LP Sbjct: 241 ITAILQDVHSNYDIDIFRELIAEAAKL--TKTNNTEHPSLKVLSDHIRATTFLIGDGVLP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 ANEGRGYVLRRI+RRA+ + LG P L+ L MG Y + LIE + Sbjct: 299 ANEGRGYVLRRIIRRAIRHGYKLGVRAPFFFKLVAPLNLVMGDTYRFSKEQSSLIESEIH 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E++RF +T++ G+ +L+ + L ++G VAFKL+DT G PLD+ D+ G Sbjct: 359 LEEKRFFETIENGMGILEDTIKELVGKNKTAISGKVAFKLHDTFGFPLDLTADVCRENG- 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 I+ F+ +++Q++ AR K + T F+GYD Sbjct: 418 ISINSEEFDAEMDKQKTMAREAGNF-------KAKLQINYSGPDTVFLGYD--------- 461 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + S+I+ I+ + V +G+ ++ DQTPFYAE+GGQ+GD Sbjct: 462 --------------KSSTSAILLGILTHEQSVASITNGESAMLILDQTPFYAESGGQIGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + +TD K I+VH + +G L + I++++R+ + NHSAT Sbjct: 508 IGSISSEEGVFDVTDTFKIKGNIYVHVGSMIKGKLSINDKIEADINHEHRQHVMRNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL ILG+H+ Q GS + RFD +H KP+T E SIE VN I +N Sbjct: 568 HLMHKALKEILGNHIEQKGSLVDSYRTRFDFSHPKPLTYKEKTSIELMVNQEILKNQTTQ 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 +M+ + A +GA L G KY D+VRV+ + S LCGGTHV+ TG+I L I Sbjct: 628 ASVMDIDSAKKTGAMMLFGEKYGDKVRVLEIGN------SKELCGGTHVAKTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SES I +GIRR+EA TG + Q+ + ++ L V V +V ++ ++ + Sbjct: 682 QSESGISSGIRRVEATTGLNVIGLIAAQETIIDNVTKELNVGASEVTSKVSQLMKQLKDN 741 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + I ++ K ++ + S F+ + V++ EL+ ++D L++K QS +I Sbjct: 742 EKIISQLKSKIAGSEGSDLVGQAIDTGKYQFLGVSVDRVEANELREMIDNLKEKFQSAVI 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G K S + VT++L A D+A+L + +GG G GGR +MA +GGPN Sbjct: 802 IL-GSHSNNKVSFAVGVTDNLTQEIKAGDIAKLLGEAVGGKG-GGRDNMAMAGGPNIQLI 859 Query: 886 DQAIAGVASFLKK 898 D+AI+ + L K Sbjct: 860 DEAISQIKDHLIK 872 >gi|167767297|ref|ZP_02439350.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1] gi|167711272|gb|EDS21851.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1] Length = 868 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 354/900 (39%), Positives = 509/900 (56%), Gaps = 48/900 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 +LEFF+ GH L S SL+P ND +L+ N+GM P K FTGQE P VTT QKC+R Sbjct: 1 MYLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTTCQKCIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK LD RLY +V Sbjct: 61 TG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVIGLDPDRLYPSV 116 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 Y++D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D+GE G P Sbjct: 117 YEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPD 175 Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 + +RY+E+WN VF QFE L +IDTGMGLER+A V+QE + +D+D Sbjct: 176 CTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVVVQEVDSIFDVD 235 Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 K + +V G+ Y + V+ RVI DH+RS++F+++DGI P+NEGRGYVLRR++ Sbjct: 236 SIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSNEGRGYVLRRLI 295 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA + RLLG + + + E YPEL + I L E+++F KT+D+G Sbjct: 296 RRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQEEKQFNKTIDQG 355 Query: 366 LVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L + + + + L G AFKLYDT+G PLD+ +IL +G +D F + ++ Sbjct: 356 LSILADMEKAMNEKGSKELAGADAFKLYDTYGFPLDLTIEILEEKGFT-VDKEGFEKEMQ 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR ARA + + + T+F+GYD L Sbjct: 415 VQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL-------------------- 454 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + A+ + E+V G K +V DQT FYA +GGQ D G I ++ Sbjct: 455 ---TCEGEITAMTTETEVVSTLNKGDKGTIVADQTAFYATSGGQEADKGVIISGDASFEV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DV K + G F H V G V T++ +NR + NHSATHLL AL +LG+ Sbjct: 512 EDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHLLQKALREVLGT 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + LRFD TH P++ E+ +E VN+ IAQ+LPVVT++M+ E+A +G Sbjct: 572 HVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTKVMSMEEAKKTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVVS+ G S LCGGTHV +TG I I+SE+ + +G+RRI Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILSETGVASGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+T Q ++ Q+E+LK A LK + ++ R+E + E ++L+ + K +L Sbjct: 687 EAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKSENESLKSKLAK 746 Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L ++ V ++ I +VD L+ + D L++K+ G+I+L K+ K + Sbjct: 747 DALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVLAS-QKDGKVFL 805 Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + +VT++ +A +L + A +GGGG GGRP+MAQ+GG N +A+A V L+ Sbjct: 806 VAMVTDEAQKAGAHAGNLIKAIAGCVGGGG-GGRPNMAQAGGKNPAGIPEAVAKVKEILE 864 >gi|148244942|ref|YP_001219636.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] gi|205830283|sp|A5CVU0|SYA_VESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146326769|dbj|BAF61912.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] Length = 865 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 367/902 (40%), Positives = 531/902 (58%), Gaps = 44/902 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL++F+ GH + S+SLIP ND TL+F N+GMVPFK++F+G EK Y Sbjct: 1 MKTAQIRQKFLDYFESKGHIIESSASLIPHNDKTLLFVNAGMVPFKDVFSGIEKRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LTKE +L Sbjct: 61 VSVQRCARAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHYAWEFLTKELNLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 ++ L+++V+D+D EA +W G ++I R DNFW M +TGPCGP SEIF+D GE Sbjct: 121 KKNLWVSVFDQDNEAEDIWVNEIGFPKNRISRCGAKDNFWQMGDTGPCGPSSEIFYDHGE 180 Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GG P ++E+G+RYIEIWNLVF +F++Q L +DTGMGLER+ VLQ K Sbjct: 181 HIAGGPPGHANEDGDRYIEIWNLVFTEFDKQEDGYLKPLAVPCVDTGMGLERLVAVLQHK 240 Query: 241 TNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD D F++L++A +T +N + RVI DH+RS++F+I DG++P+NEGRGY Sbjct: 241 NNNYDTDGFQNLVKAVVNLTPKFNNIKDNNASVRVITDHIRSAAFMIVDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RR + + +G + L L E YPEL QA +E+ L+ E++RF Sbjct: 301 VLRRIIRRGIRHGHKMGIGKVFFYRLASILALEFKDVYPELEQALSKVEKVLKREEQRFS 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD+G+ +L+ V+++ EI NG + FKLYDT+G P+D+ DI R L ID+ F Sbjct: 361 KTLDQGMSILEEVITNFKGSEI-NGKIVFKLYDTYGFPVDLTSDIARERNLT-IDMSGFE 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +QR RAR + KI + T+F+GY L+ Sbjct: 419 VEMTKQRDRARQA-------SDFKISEKGVDIAERTEFLGYKQLKNV------------- 458 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S+++AI+ E+VE+ G VV Q+ FYAE+GGQ+GD G + Sbjct: 459 ----------SLIQAIINNNELVEKIEVGDHGIVVLAQSSFYAESGGQIGDKGILSNMQV 508 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ K+ G F HH ++ +G+L+ ++ +D ++R+ ++ NHSATHLLH AL Sbjct: 509 EFRVDHTNKQKSGAFEHHGVLNKGVLKVSDAVQANVDKKSRKCIARNHSATHLLHAALHI 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG V Q GS + + LRFD ++ K I ++L+ IE VN I N V T I N E A Sbjct: 569 VLGKAVMQKGSLVGSEKLRFDFSYDKVIVKSDLERIESIVNRKILGNTKVYTDITNIEGA 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA L G KY D VRV+++ S LCGGTHV+ G+I L I+SESS+ AG Sbjct: 629 KKKGAMTLFGKKYGDTVRVLTMGK---NEFSVELCGGTHVNQLGDIGLFRIISESSVSAG 685 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KR 777 +RRIEA+TG A L +A + S VVG+V ++ ++ ++L+ A ++ Sbjct: 686 VRRIEALTGYDAYQFDNRIQNSLNKIAQMTRSSNTEVVGKVTQLIKQQKELEKQIATFQK 745 Query: 778 KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K+ N D + ++ + +S ++ V SK+L++++D L+ K+ S +I+L + + Sbjct: 746 KIANNQGDDLIVQAQEVKGIKLLSTVVEGVTSKDLRNIVDKLKDKLSSAVIVLAVVIND- 804 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S++ VT+DL ++ A + AK + GG G GR MAQ GG +A+A V S Sbjct: 805 KVSLVTGVTKDLTKQYQARKILNHVAKQI-GGKGDGRSDMAQGGGTKPECLIKALASVKS 863 Query: 895 FL 896 + Sbjct: 864 LI 865 >gi|315651872|ref|ZP_07904875.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986] gi|315485874|gb|EFU76253.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986] Length = 885 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 347/906 (38%), Positives = 511/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR FLEFF+ GH ++ S SL+P ND +L+ NSGM P K FTGQE P + V T Sbjct: 12 VNQIRKKFLEFFESKGHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVCT 71 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 72 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLDPN 127 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++W K G+ AD+I + DNFW E GPCGPCSE+++D+GE Sbjct: 128 RLYPSVYLDDDEAFEIWNKEIGIPADRIYKFGKEDNFWEHGE-GPCGPCSEVYYDRGEKY 186 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +RY+EIWN VF QF K L + +IDTGMGLER+A LQ+ Sbjct: 187 GCGKPTCTVGCDCDRYMEIWNNVFSQFNSDGKGNYTELIQKNIDTGMGLERLAVALQDVE 246 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +++D K L+ ++ Y+ + V+ R+I DH+RS +F+I+DGI+P+NEGRGY Sbjct: 247 SIFEVDTIKALLDKVAELAHTSYKEDEKKDVSLRLITDHIRSCTFMISDGIMPSNEGRGY 306 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R+LG + + +L + YPEL + K +I + L E+ +F Sbjct: 307 VLRRLLRRAARHGRMLGIKDTFLANLANKVIELSKDGYPELEEKKEMILKVLTEEENKFN 366 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + +L K I++G+ AF+LYDT+G PLD+ ++I+ +G + +D Sbjct: 367 KTIDQGLSILSDIEENLSKSGQRIISGEDAFRLYDTYGFPLDLTKEIIEEKGFS-VDEDG 425 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN+A+E QR++ARA + + + + F GYD L Sbjct: 426 FNKAMEAQRNQARAARKATNYMGADVTIYQSLDPKLTSVFEGYDSLTD------------ 473 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + A+ + EIVE G ++ D+T FYA GGQ D G Sbjct: 474 -----------TGKITALTTEDEIVEAVAEGDHGTIILDKTSFYATMGGQNADIGIIKTA 522 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + DV K H V +G+ + ++ +D +NRR+ + NHSATHLLH AL Sbjct: 523 NSVFNVVDVIKLGGNKIGHVGYVSQGMFKLGDTVETVVDAENRRRTAANHSATHLLHKAL 582 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS + LRFD TH K ++ EL +E VN I ++LPVVT +M+ E Sbjct: 583 REVLGNHVEQAGSYVDARRLRFDFTHFKSLSKEELDDVEALVNREINKSLPVVTDVMDVE 642 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A SGA AL G KY VRVVS+ G S LCGGTHV +T +I L I+S++ I Sbjct: 643 SAKKSGAMALFGEKYQKDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKIISDNGIA 697 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + ++ A LK ++ +V + E + EE + L+ + K Sbjct: 698 AGVRRIEALTNDGVIEFYKNIENRMNECAKLLKTNENELVSKTESVLEEIKTLKSENEKL 757 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L E L S +I + F++ +S V+ EL+++ D L+ + G+++L Sbjct: 758 KAKLASEALGDSKESIEEIGGIKFIAMHVSGVEMNELRNLGDKLKSDVDDGMVVLAS-DV 816 Query: 833 EKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K ++L + + L +A ++ + A ++GGGG GGRP++AQ+GG N A+ Sbjct: 817 DGKVNLLCMAGDKALAVGAHAGNIIKGIAAIVGGGG-GGRPNIAQAGGKNPKGIKDALDK 875 Query: 892 VASFLK 897 K Sbjct: 876 AKEVFK 881 >gi|289578243|ref|YP_003476870.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] gi|289527956|gb|ADD02308.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] Length = 877 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 352/906 (38%), Positives = 534/906 (58%), Gaps = 51/906 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + +TT Sbjct: 7 NEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+R D++ VG+T RH TFFEMLGNFS G YFK+ AI AW+ +T+ L R Sbjct: 67 QRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVDR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++++Y+ED+EAF++W KI GL +++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181 Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R+IE WNLVF QF + + LP +IDTGMGLERMAT++Q + Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVDS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D+ + + ++ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGYV Sbjct: 242 IFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I+ ++ E+ERF + Sbjct: 302 LRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFKE 361 Query: 361 TLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +L ++ L +L G AFKLYDT+G PLD+ ++IL G +D + Sbjct: 362 TIDQGLTILQDYINELKLQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEVG-IVVDEEGY 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + LE+QR RAR+ S + I+ +L + T+F+GY Sbjct: 421 TKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGYT----------------- 461 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 T G +S V AIV++ E+VEEA +G V ++ D TPFYAE+GGQ+GD G + Sbjct: 462 ------TYGCNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLENEN 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +++ D +K + FVH +ERG++ + ID +R + NH+ATHLLH AL Sbjct: 516 VLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKALK 574 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V ++ Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTYDE 634 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA AL KY D+VRVV + +S LCGGTHV +T EI L +VSES++ A Sbjct: 635 ALKEGAVALFTEKYGDKVRVVRI-----DDYSVELCGGTHVKNTNEIGLFKVVSESAVGA 689 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A +L ++E LK + LK +V ++E + + + + K Sbjct: 690 GLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQLK 749 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +++ S + + + I + DS+ LK++ D L+ K+++ +++L + E Sbjct: 750 IKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASSTLE 809 Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 KA + + T+D++ N + + + K + G GGGRP +AQ G N +K +A+ Sbjct: 810 -KAIFVGMATKDVVQKGINMGAVIKEACK-VSEGNGGGRPDIAQGTGKNPSKVKEALDKA 867 Query: 893 ASFLKK 898 +K+ Sbjct: 868 IEVVKE 873 >gi|121535965|ref|ZP_01667759.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1] gi|121305457|gb|EAX46405.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1] Length = 869 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 355/905 (39%), Positives = 517/905 (57%), Gaps = 55/905 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF H +LPS+SLIP NDPTL+ +GM PFK FTG+ KP + + Sbjct: 1 MTGNELRKKFLQFFASKDHLVLPSASLIPENDPTLLLIGAGMAPFKPFFTGKMKPPHPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR G D++NVGRT RHHTFFEMLGNFSFG YFK AI +W+ +T+ +L Sbjct: 61 ATCQKCVRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKREAITWSWEFITEHLNLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+IT++ ED+EAF++W K G+ D+I+R+ DNFW + GPCGPCSEI D GE Sbjct: 117 KDKLWITIHTEDDEAFEIWHKEVGVPVDRIVRL--EDNFWEIGP-GPCGPCSEIHIDLGE 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P +RY+EIWNLVF Q+++ + L K +IDTG GLER+A+VLQ Sbjct: 174 ERGCGKPDCRVGCSCDRYLEIWNLVFTQYDRDEEGNYTPLAKKNIDTGAGLERIASVLQN 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K +N++ DL +I+ + +V G+ Y V+ +VI DH RS + +IADG+LP+NEGR Sbjct: 234 KRSNFETDLLFPIIEHTAKVAGVTYGESAKTDVSLKVIADHGRSLTIMIADGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG +P + ++ + YPE+ K I++ ++ E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIDKPFLADIVDVVANIFAEPYPEINDKKAYIKKVVQLEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL +G+ LL+ + L + +L+G FKLYDT G P ++ Q+IL + +D Sbjct: 354 FNATLAQGMELLNSHIRVLKESGKTVLDGATGFKLYDTFGFPWELTQEILAEHDME-LDR 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+QA++EQR RARA L TQ + YD Sbjct: 413 AGFDQAMDEQRQRARAARQENEERVVVPDLSGLV-----TQELKYD-------------- 453 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S+ V ++Q G++VE A GQ+V ++ D TPFYAE GGQ+GD+G Sbjct: 454 ---------PQAESARVVLVLQDGKVVEAAHDGQEVALILDVTPFYAEGGGQVGDSGTLT 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + +K +G H V G ++ + + +D RR S NH+ATHLLH Sbjct: 505 AQYGTVAVVTARKLPDGTIYHVGSVTEGTIKPGDMVKIAVDAARRRDASRNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS + PD LRFD +H P+T +L +E+ VN++I +N+ V Sbjct: 565 ALKKVLGEHVNQAGSYVGPDRLRFDFSHFAPVTVEQLAEVENMVNEVILRNIAVGRIETT 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +E A GA AL G KY +RV VV + S LCGGTHVSST EI IVSE+ Sbjct: 625 QELAREMGATALFGEKYGERVSVVII-----DDFSKELCGGTHVSSTAEIGQFKIVSETG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +GIRRIEA+TG A ++ ++E L++ A LK ++VGR++ + + L+ A Sbjct: 680 IGSGIRRIEAVTGYAALEYIRSREEILQAAALALKSRPEDLVGRIDGVLARVKDLEKELA 739 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + +I V ++ + D +L+S D ++ +++SG++ L + Sbjct: 740 ALKTKLAKFAVEDLLANKKEINGVALVAGQVDAADMDDLRSTADLVRDRLRSGVVALGAV 799 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + E K + +++ T D + R +A ++ + AKV GGGG GGRP MAQ+GG K A+ Sbjct: 800 TGE-KVNFVVMATADAVARGVHAGNIIKEMAKVAGGGG-GGRPDMAQAGGKQPAKLADAL 857 Query: 890 AGVAS 894 Sbjct: 858 RIAQE 862 >gi|302386453|ref|YP_003822275.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1] gi|302197081|gb|ADL04652.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1] Length = 879 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 347/912 (38%), Positives = 513/912 (56%), Gaps = 50/912 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTGQE P Sbjct: 1 MKNYGVNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI +W+ LT Sbjct: 61 RRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTGVI 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY ED+EAF++W K G++ ++I R DNFW GPCGPCSEI++D Sbjct: 117 GLDPDRLYPSVYLEDDEAFEIWNKKIGIAPERIFRFGKADNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +RY+E+WN VF QFE L + +IDTGMGLER+A V Sbjct: 176 RGEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D K L+ + +Y+ N V+ R+I DH+RS +F+I+DGI+P+N Sbjct: 236 VQDVDSIFDVDTIKALLNRVAALARTEYKKNADVDVSLRLITDHVRSCTFMISDGIMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + L + YPEL + K +I + L E Sbjct: 296 EGRGYVLRRLLRRAARHGRLLGIEGKFLADLSTTVIELSKDGYPELEEKKAMILKVLTQE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F KT+D+GL +L + + + IL+G+ AFKLYDT+G PLD+ +IL + G Sbjct: 356 EDKFNKTIDQGLAILGELEEEMVKKGETILSGENAFKLYDTYGFPLDLTLEILEEKNF-G 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+++QR AR + + + T+FIGYD L Sbjct: 415 VDEEGFKAAMQKQRETARNARKTTNYMGADVTVYQSIDPAITTEFIGYDKL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + ++VE G+ +V +QT FY GGQ GD G Sbjct: 466 --------------ICDSKILVLTTDTDLVEALTDGETGTIVTEQTVFYGTMGGQQGDVG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D ++ + G H + +G+L++ + L + NR+ NHSATHL Sbjct: 512 YIVSDRGEFKVEETIHLQGGKVGHVGKMAKGMLQSGDVVTLKVCEGNRQNTGKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS + D LRFD TH +T E++ +E VN+ I ++LPV T Sbjct: 572 LQKALRTVLGSHVEQAGSFVDGDKLRFDFTHFSAMTPEEIRQVETLVNEKIKESLPVKTE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM EDA SGA AL G KY D VRVV + G S+ LCGGTH+++TG I I+S Sbjct: 632 IMTLEDAKKSGAMALFGEKYGDTVRVVKM-----GDFSTELCGGTHINNTGVIGSFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I AG+RRIEA+TG + +++L A K + ++E + +E + L Sbjct: 687 ETGIAAGVRRIEALTGDGLMHYYQETEKELHEAAKAAKTMPSALTSKIESLLDEIKALHS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K K +L + L ++ V ++ + +VD L+++ D L++K+ G+I++ Sbjct: 747 ENEKLKSRLAKDSLGNVMDQVKEVKGVKILATKVMDVDMNGLRNLGDQLKEKLGEGVIVI 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 I ++ K +++ VT++ + +A +L + A ++GGGG GGRP+MAQ+GG N + + Sbjct: 807 ASI-QDDKVNLMAAVTDEAQKKGAHAGNLIKAIASLVGGGG-GGRPNMAQAGGKNPSGVE 864 Query: 887 QAIAGVASFLKK 898 + V + + Sbjct: 865 ACLEKVTEVVAE 876 >gi|269925210|ref|YP_003321833.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269788870|gb|ACZ41011.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 879 Score = 814 bits (2103), Expect = 0.0, Method: Composition-based stats. Identities = 357/907 (39%), Positives = 517/907 (57%), Gaps = 47/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ FLEFF+ GH ++PSSSL+P DPTL+FTNSGMV FK++F G+E Y Sbjct: 1 MKSSEIRSKFLEFFEARGHTVVPSSSLVPAKDPTLLFTNSGMVQFKDVFLGRESRSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG + RH TFFEMLGNFSFG YFK AI AW+ +T+ L+ Sbjct: 61 TTAQKCMRAGGKHNDLENVGPSARHLTFFEMLGNFSFGDYFKREAIGYAWEFVTQVLGLE 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TV+ D+EA LW++++GL +IIR+ DNFW MA+ GPCGP SEIF+D+G Sbjct: 121 PSRLWATVHYTDDEAASLWQEVAGLPESRIIRMGDEDNFWQMADVGPCGPNSEIFYDRGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + + R+ E WNLVFMQ+ Q R LPK +IDTG+GLER + ++Q Sbjct: 181 EKGCGDPNCTPAHDCGRFWEFWNLVFMQYYQDESGNRTPLPKKNIDTGLGLERTSAIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + ++ DLF ++ +++ + IV +RVI DH RS +FLIADG+ P NEGR Sbjct: 241 VDSIFETDLFVPIMDEVQRIAGHSDEDRRREIVAYRVIADHSRSLAFLIADGVTPGNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 YVLRRI+RRA+ + R +G + + MG Y EL I++ R+E+E Sbjct: 301 SYVLRRIIRRAIRFGRRIGIEGHFLSDTARVVVDIMGHHYTELEDQWSFIDKVTRAEEEH 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL RG+ LD ++ L + + G+ AF+LYDT+G PLD+ ++ RG + +D Sbjct: 361 FSRTLARGVAQLDDLIDKLSASGQKEIPGEDAFRLYDTYGFPLDLTLELARDRGFS-VDT 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A+E QR+++RA S S TQF GY L Sbjct: 420 EGFKRAMERQRAQSRAASTFTAKMPAAYAALS----GEPTQFTGYTTLED---------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V AI+++GE+V++ GQ+ E++ D+TPFYAEAGGQ+GDTG Sbjct: 466 -------------TGRVMAIIREGELVDKVEHGQEAEILLDRTPFYAEAGGQVGDTGVIT 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G + D Q+ G +H V G + ++ L +D + R+ + NH+ATH+LH Sbjct: 513 GPEGDFHVLDTQRPVNGYILHRGRVLHGSISVGQNVDLVVDARRRQDIMRNHTATHILHK 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 L +LG H Q GS + PD LRFD TH ++ E IE +ND+ + V + Sbjct: 573 TLRDVLGPHARQAGSLVAPDRLRFDFTHPSQLSDEEFFEIERIINDVSQDDRKVYAQEKP 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +AIASGA AL G KY D VRVVS+E + S LCGGTHV TGEI +YI SE S Sbjct: 633 YTEAIASGAMALFGEKYGDIVRVVSIE-----DYGSELCGGTHVHHTGEIGPIYITSEGS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RR+EA+TG+ A + + E L+ L + LKV + +V + E R+ + Sbjct: 688 IASGVRRVEAVTGRGAIKYARERMELLERLGAKLKVPTSEIERQVALLQERLREQERQIE 747 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + QL ++ + ++ + S + + + D L+ +++SG+++ VG Sbjct: 748 QLRRQLAAGEIDQMLRNVRQVDGTKLLVAQTSLDSREAMSDLADRLRDRLRSGVVV-VGS 806 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K S++ VVT DL+ +A L + + ++GGGG GGRP A++GG K ++A+ Sbjct: 807 VLQGKPSIVAVVTPDLVQKGVHAGKLVKEISALVGGGG-GGRPDRAEAGGRFPEKLEEAL 865 Query: 890 AGVASFL 896 V L Sbjct: 866 GSVDEVL 872 >gi|225570650|ref|ZP_03779673.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM 15053] gi|225160477|gb|EEG73096.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM 15053] Length = 879 Score = 813 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 341/907 (37%), Positives = 507/907 (55%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLE+F+ GH ++ S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEYFESKGHLIMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ +I+ W+ LT L+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLEPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EA+++W K G++ ++I R DNFW +GPCGPCSE+++D+G Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGPKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A V+Q Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACVVQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L +T +Y ++ V+ RVI DH+RS +F+I+DGI+P+NEGRGY Sbjct: 241 SMFDIDTIKALRDHVCHITKTEYGQDDETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG ++ L + YPEL + K I + + E+E+F Sbjct: 301 VLRRLLRRACRHGRLLGVEGEFLVELARTVIEGSRDGYPELEEKKDFIFKVIAKEEEQFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + K+ + L+GD AFKLYDT+G PLD+ ++IL +GL+ +D Sbjct: 361 KTIDQGLSILAEMEAEMEKNGEKTLSGDHAFKLYDTYGFPLDLTKEILEEKGLS-VDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F ++E QR AR + + ++F+GYD L Sbjct: 420 FRASMEVQRRTAREAREVTNYMGADATVYESIAPEVTSEFVGYDNL-------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V + + EI + G + V ++TP YA +GGQ D G Sbjct: 466 ---------SFESSVTVLTTETEITDALSDGDRGTVFVEKTPLYATSGGQEADKGYIRTA 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ DV K G H V +G+++T ++ L +D +NR + NHSATHLLH AL Sbjct: 517 DGEFRVEDVVKLLGGKIGHVGYVTKGMIKTGDTVTLEVDEENRALSARNHSATHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG+HV Q GS + + LRFD TH +T ELK +E+ VN I LPV + E Sbjct: 577 RTVLGTHVEQAGSSVNAERLRFDFTHFSALTKEELKKVEEIVNAQIMAALPVKVENLPIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GAAAL G KY D VRVVS+ G S CGGTHV +TG I I+SE+ + Sbjct: 637 EARKTGAAALFGEKYGDIVRVVSM-----GDFSVEFCGGTHVENTGVITAFKIISETGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + +++L A +K S + ++ + E + L Sbjct: 692 AGVRRIEALTSKGLLDYYDELEKRLAEAAKLVKASPDKLAEKITHLLAENKTLHSEVESL 751 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + ++ V ++ + VD L+ + D L+ K+ G+I++ + Sbjct: 752 KSKLAQDAMGDVMDQVTEVKGVKLLATEVEGVDMNGLRDLGDQLKDKLGEGVIVIASAA- 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K +++ T+ +++ +A +L + A ++GGGG GGRP+MAQ+GG N + AIA Sbjct: 811 GGKVNLMATATKGAIEKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPDGISSAIAK 869 Query: 892 VASFLKK 898 L++ Sbjct: 870 AGEVLEE 876 >gi|15644148|ref|NP_229197.1| alanyl-tRNA synthetase [Thermotoga maritima MSB8] gi|6707752|sp|Q9X1B6|SYA_THEMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4981959|gb|AAD36467.1|AE001792_7 alanyl-tRNA synthetase [Thermotoga maritima MSB8] Length = 863 Score = 813 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 355/902 (39%), Positives = 533/902 (59%), Gaps = 48/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V Sbjct: 4 MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + Sbjct: 63 ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + +L+++VY+EDEEAF++W + GL +I+R+ DNFW TGPCGP +EIF+D G Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKRILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C G + R++EIWNLVF ++ Q + + LP+ +IDTG GLER ++ Sbjct: 179 YSKGCPEGEGCTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q +N+D DLF+ +I+ E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+NE Sbjct: 239 QGVYSNFDTDLFQPIIKRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E+ Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF KTL++G+ + D ++ ++ + AF+LYDT+GLPL++ +I +G +D+ Sbjct: 359 NRFLKTLEQGMKVFDEIVEK---KGKIDSEDAFRLYDTYGLPLELTLEIAKEKG-VEVDV 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ +EEQ+ ++RA +G + K T+F GY+ L Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V + + E VEEA G VEVVF +TPFYAE GGQ+ DTG Sbjct: 464 -------------EGEVVLVARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + V + +EG+ VH + G LR ++L +D + R NH+ATHLLH Sbjct: 510 WRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVILRVDKKRREATMRNHTATHLLHA 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV R + Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTS 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A+ SG AL KY D V + S LCGGTHV +TG+I L I+SE S Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIISEES 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TG A L Q + + L L + + RV + E+ ++L+ + Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + ++ + + V + V++K L + D + KK GI++L E K Sbjct: 745 QGRISEERIAMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+++ V+E+LL +++A +AR AK L GG GGGR + AQ+GG + + + + F Sbjct: 803 VSLVVKVSENLLGKYDASSIARNIAKEL-GGNGGGRKNFAQAGGRHPERIKDVLERLEEF 861 Query: 896 LK 897 L+ Sbjct: 862 LR 863 >gi|170289222|ref|YP_001739460.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2] gi|205830279|sp|B1LBS9|SYA_THESQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170176725|gb|ACB09777.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2] Length = 863 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 358/902 (39%), Positives = 532/902 (58%), Gaps = 48/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V Sbjct: 4 MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + Sbjct: 63 ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + +L+++VY+EDEEAF++W + GL KI+R+ DNFW TGPCGP +EIF+D G Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C G + R++EIWNLVF ++ Q + + LP+ +IDTG GLER ++ Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q +N+D DLF+ +I E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+NE Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E+ Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF KTL++G+ + D ++ ++ + AF+LYDT+GLPL++ +I +G +D+ Sbjct: 359 NRFLKTLEQGMKVFDEIVEK---KGKIDSEDAFRLYDTYGLPLELTLEIAKEKG-VEVDV 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ +EEQ+ ++RA +G + K T+F GY+ L Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V I + E VEEA G VEVVF +TPFYAE GGQ+ DTG Sbjct: 464 -------------EGEVVLIARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + V + +EG+ V + G LR +VL +D + R NH+ATHLLH Sbjct: 510 WRDGKALVEYVFEASEGVIVQRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLHA 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV R + Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTS 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A+ SG AL KY D V + S LCGGTHV +TG+I L I+SE S Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIISEES 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TG A L Q + + L L + + RV + E+ ++L+ + Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + ++ + + + V + V++K L + D + KK GI++L E K Sbjct: 745 QGRISEKMIAMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ V+E+LLDR++A +AR AK L GG GGGR + AQ+GG + + + + F Sbjct: 803 VFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERLEEF 861 Query: 896 LK 897 L+ Sbjct: 862 LR 863 >gi|281412824|ref|YP_003346903.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10] gi|281373927|gb|ADA67489.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10] Length = 863 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 358/902 (39%), Positives = 533/902 (59%), Gaps = 48/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V Sbjct: 4 MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + Sbjct: 63 ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + +L+++VY+EDEEAF++W + GL KI+R+ DNFW TGPCGP +EIF+D G Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C G + R++EIWNLVF ++ Q + + LP+ +IDTG GLER ++ Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q +N+D DLF+ +I E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+NE Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E+ Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF KTL++G+ + D ++ ++ + AF+LYDT+GLPL++ +I +G +D+ Sbjct: 359 NRFLKTLEQGMKVFDEIVEK---KGKIDSEDAFRLYDTYGLPLELTLEIAKEKG-VEVDV 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ +EEQ+ ++RA +G + K T+F GY+ L Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V I + E VEEA G VEVVF +TPFYAE GGQ+ DTG Sbjct: 464 -------------EGEVVLIARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + V + +EG+ VH + G LR +VL +D + R NH+ATHLLH Sbjct: 510 WRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLHA 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD LRFD TH K ++S+E++ +ED VN+ I + +PV R + Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSSEIEQVEDLVNEWIMEAIPVEVRYTS 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A+ SG AL KY D V + S LCGGTHV +TG+I L I+SE S Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIISEES 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TG A L Q + + L L + + RV + E+ ++L+ + Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + ++ + + + V + V++K L + D + KK GI++L E K Sbjct: 745 QGRISEKMITMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +++ V+E+LLDR++A +AR AK L GG GGGR + AQ+GG + + + + F Sbjct: 803 VFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERLEEF 861 Query: 896 LK 897 L+ Sbjct: 862 LR 863 >gi|218132498|ref|ZP_03461302.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC 43243] gi|217992608|gb|EEC58610.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC 43243] Length = 868 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 351/901 (38%), Positives = 514/901 (57%), Gaps = 48/901 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 +L+FF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R Sbjct: 1 MYLDFFESKGHLKMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +V Sbjct: 61 TG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDASRLYPSV 116 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 Y +D+EAF +W K G++ ++I R DNFW +GPCGPCSEI++D+GE G PG Sbjct: 117 YVDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPG 175 Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ + +D+D Sbjct: 176 CTVGCDCDRYMEVWNNVFSQFNNDGHGNYSDLIQKNIDTGMGLERLAVVVQDVDSIFDVD 235 Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 + L ++ G+ Y+ + V+ RVI DH+RS +F+++DGI+P+NEGRGYVLRR++ Sbjct: 236 TLQALRNKVCEMAGVTYKEDEKTDVSIRVITDHIRSVTFMVSDGIMPSNEGRGYVLRRLL 295 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA + RLLG + L + YPEL + K I + + E+++F KT+D+G Sbjct: 296 RRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELDEKKAFIFKVIDQEEDKFNKTIDQG 355 Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L+ + + L K ++IL+G AFKLYDT+G PLD+ ++IL +G+ ID F A+E Sbjct: 356 LGILEQLEADLVKTGNKILSGADAFKLYDTYGFPLDLTKEILEEKGIT-IDEEGFKSAME 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR +AR + + + + F+GYD L Sbjct: 415 EQRIKARTARKTTNYMGADATVYDEIDPAITSSFVGYDKLTN------------------ 456 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S V + + +VE G + +V D+T FY GGQ GD G ++ Sbjct: 457 -----QSKVSVLTTEENVVEALSDGDRGTIVVDETVFYGSMGGQEGDRGVITSPEGEFRV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 G H ++ +G+++T ++ LT+D R NHSATHLL AL +LG+ Sbjct: 512 DTTIHLKGGRIGHVGVMTKGMIKTGDTVTLTVDAPARAATCANHSATHLLQKALRDVLGT 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + PD LRFD H + +T E+ S+E VN+ IA+ LPVVT IM+ EDA +G Sbjct: 572 HVEQKGSYVDPDRLRFDFAHFQAMTPDEIASVESIVNEKIAEALPVVTNIMSLEDAKKTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D+VRVVS+ G S+ LCGGTHV++T IML IVSES + AGIRRI Sbjct: 632 AMALFGEKYGDKVRVVSM-----GDFSTELCGGTHVANTSNIMLFKIVSESGVAAGIRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+TG ++ + L K ++ R+ + +E + L + K K +L Sbjct: 687 EALTGNGVLAYYRNIENTLAEACRTAKTEPSQLIHRIASMNDEIKSLSSENEKLKAKLAN 746 Query: 784 ED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 E + +I F+ +++VD L+++ D ++ KI SGI++L + K ++ Sbjct: 747 EAVGDVLANVQEIGSFRFLPVSVADVDMNGLRTLGDNMKDKIGSGIVILASTQGD-KVNI 805 Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + + T+D + + +A +L + A ++GGGG GGRP+MAQ+GG N D+ +A A Sbjct: 806 IAMATDDAVAKGAHAGNLIKAVAPIVGGGG-GGRPNMAQAGGKNPAGIDEMLAKAAEVAA 864 Query: 898 K 898 + Sbjct: 865 Q 865 >gi|326791257|ref|YP_004309078.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427] gi|326542021|gb|ADZ83880.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427] Length = 881 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 328/911 (36%), Positives = 503/911 (55%), Gaps = 49/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +++ +R +L+FF+ H S L+P ND +L+ N+GM P K FTGQE+P Sbjct: 1 MKNYSLNELREMYLKFFESKMHLRAKSFPLVPHNDNSLLLINAGMAPLKPYFTGQEEPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + +TT QKC+R G D++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +TK Sbjct: 61 RRMTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIEWAWEFVTKHL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ RL+ TVY +DEEA ++W+ GL +K+I + DNFW GPCGPCSEI+FD Sbjct: 117 EIPVERLFATVYQDDEEAAEIWRNKIGLPNEKVIYMGKEDNFWEAGIDGPCGPCSEIYFD 176 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +G P + +RY+E WNLVF QFE+ L + +IDTGMGLER+A + Sbjct: 177 RGPEFGCDSPDCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAAM 236 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q ++ +D+D K + Q+ G+ Y N V+ RVI DH+RS +F+ ADG+LP+N Sbjct: 237 MQGVSSIFDVDTIKAIRDHVCQLAGVTYGENYKNDVSIRVITDHIRSVTFMAADGVLPSN 296 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV+RR++RRA+ +A+LLG + L+ + Y EL I + L E Sbjct: 297 EGRGYVMRRLLRRAVRHAKLLGIEGLFLKDLVKTVVDNSKHEYTELEDKYEYITKLLTVE 356 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++ F +T+DRGL +L + + + +L+G F L DT+G P+D+ +IL +GL Sbjct: 357 EKNFNETIDRGLNILKAHIDEMKAEGKTVLDGKACFTLSDTYGFPIDLTHEILEEQGLKA 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F ++ QR +AR G ++ F+ + T F+GYD L Sbjct: 417 -DEEGFKVEMDAQRQKARDARGGSKYMGADETIFNQMDSTMKTTFVGYDKLE-------- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + ++ + E++E A G + VV +TPFYAE+GGQ GDTG Sbjct: 468 ---------------TTGTLEVLANDEELLEAAGCGDSIYVVISETPFYAESGGQAGDTG 512 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++D K G F HHA V G + S T++ +R S NHSATHL Sbjct: 513 LITTATGKAVVSDTTKVIGGKFAHHAQVVEGSIEKGQSATFTVENVSRMDTSRNHSATHL 572 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++G H+ Q GS + D LRFD TH + +T +L+ +E VN+ I + L + + Sbjct: 573 LQKALREVVGGHIEQAGSNVNKDRLRFDFTHFEALTHEQLEKVEALVNEKILEGLTITIK 632 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M ++A GA AL G KY VRVV++ G +S LCGGTH+ +T I I+S Sbjct: 633 EMPIDEARKLGAMALFGEKYGQTVRVVNM-----GDYSVELCGGTHLQNTAAIGTFKIIS 687 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEA+TG+ A + L +++ +K + VV +VE + E + L+ Sbjct: 688 ETGVAAGVRRIEAVTGRGALHFYQTMENSLNEVSALVKAKKTEVVKKVESMTIELKNLEK 747 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K K ++ I + + I E+D +LK++ D+L+ ++Q G+++L Sbjct: 748 ENEKLKAEIAASKAGALTEQAKTINGIKVLVSQIDELDMNDLKNMGDSLKDQLQDGVVLL 807 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K +++ + T +++ + + A V+GG G GGRP+MAQ+GG + +K Sbjct: 808 MSHVAD-KVNLVAMATPSAVEKGVHCGQIISAVAGVVGGKG-GGRPNMAQAGGKDASKIK 865 Query: 887 QAIAGVASFLK 897 +AI + + Sbjct: 866 EAITVAETTIN 876 >gi|120611698|ref|YP_971376.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1] gi|205829963|sp|A1TRL4|SYA_ACIAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120590162|gb|ABM33602.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1] Length = 948 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 352/931 (37%), Positives = 502/931 (53%), Gaps = 62/931 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR +FL+FF GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 9 SVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L + Sbjct: 69 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWAWELLTEVYGLPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI +DNFW MA+TGPCGPCSEI Sbjct: 129 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G IPGG PGS E+G+R+IEIWN VFMQF+ LP +DTGMGLER+A Sbjct: 189 FYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LIQA+ + TG N + +VI DH+R+++FL++DG++P+N Sbjct: 249 AILQHVHSNYEIDLFAALIQAAARETGTADLAN--PSLKVIADHIRATAFLVSDGVIPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E L++E Sbjct: 307 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHSLVKDLVAQMGDAYPKLREQEQRITEVLKAE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDV--AFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL G+ LLD L + L F + D+ A + Sbjct: 367 EERFFETLANGMDLLDSALDIQLASKALQNKTLRWFASEGREEKLVSFKDDVQVAEAVLI 426 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF------SLKEKYGAT----------- 455 D + + ++ + + + + W L K T Sbjct: 427 SDELRSTEYMQRLKETVPGLNEVKTLHSVIRDWSGLTLPGDLAFKLHDTYGFPLDLTNDV 486 Query: 456 -QFIGYDLLRGSKFMKEDRKV-------------------LCQKPPIDLTNGVSSIVKAI 495 + G + DR+ + S+ + AI Sbjct: 487 CRERGVTVDEDGFKAAMDRQKAQARAAGKFKMDKALEYGGEANRFSGYDGLTESAKIVAI 546 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555 G + +GQ VV D TPFYAE+GGQ+GD G G R + D K ++ Sbjct: 547 YVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGVIHAGGARFAVDDTLKIRADVYG 606 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 HH +E G LR ++ +D R NHS TH++H AL +LGSHV Q GS + + Sbjct: 607 HHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIMHKALREVLGSHVQQKGSLVNAE 666 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675 RFD H+ P+T A+++ IE VN+ I N P R+M+ E A +GA L G KY + Sbjct: 667 RTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARVMDIESAQKTGAMMLFGEKYGET 726 Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 VRV+ + S LCGGTHV+ TG+I L +V ES + AG+RRIEA+TG A ++L Sbjct: 727 VRVLDIG------TSRELCGGTHVARTGDIGLFKVVGESGVAAGVRRIEAVTGAGALAYL 780 Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHK 790 ++ + A L+ + GR+ + E+ + L+ A K +L Sbjct: 781 QQLEDTVAKAAGALRAPAAEITGRIGQALEQVKALEREVAALKGKLASSQGDELAGQAVD 840 Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850 + + ++ + D+K L+ MD L+ K++S I+L + K + VT D + + Sbjct: 841 VKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLAAVD-GAKVQIAAGVTPDAMAKV 899 Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 A +L A + GG GGG+P MA +GG + Sbjct: 900 KAGELVNFVASQV-GGKGGGKPDMAMAGGTD 929 >gi|313623696|gb|EFR93847.1| alanyl-tRNA synthetase [Listeria innocua FSL J1-023] Length = 879 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 349/916 (38%), Positives = 514/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDESDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ++G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQADFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++ + G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L ++F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNTTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E SG + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVDEVASGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L + + K +++ V+ED + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 VLVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|119487555|ref|ZP_01621165.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106] gi|119455724|gb|EAW36860.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106] Length = 891 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 343/916 (37%), Positives = 503/916 (54%), Gaps = 60/916 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL F+ + GH+++PS+SL+P DPT++ T +GM+PFK IF GQ P T Sbjct: 9 SGSEIRQKFLNFYAERGHKIMPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRPPEVPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI W+L T+ F L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTQAIAWGWELSTEVFGLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+++D+EAF++W+ G+ A +I R+ +DNFW TGPCGPCSEI++D Sbjct: 124 ERLVVSVFEDDDEAFEIWRDEIGIPAHRIQRMGEDDNFWKSGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ N Sbjct: 184 L-GDDKIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQSVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + G+ Y+ ++ + +VI DH+R+ LI DG+ +N GRGY Sbjct: 243 NYETDLIFPIIKTAADIAGIDYKKSDKKTQVSLKVIGDHVRAVVHLITDGVTASNIGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + YP+ + + +I+ L+ E+ERF Sbjct: 303 ILRRLIRRVVRHGRLIGIEGEFTTKVAETAIRLSEEVYPQTRERETVIKAELQREEERFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEI------------LNGDVAFKLYDTHGLPLDIMQDILCA 407 +TL+RG LL ++ EI ++G AF LYDT+G PL++ Q+I Sbjct: 363 ETLERGEKLLTDIIEKAISKEIPPQSPLSKGGGMISGKDAFVLYDTYGFPLELTQEIAEE 422 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D+ F +EEQR+R++ + T + L E T F+GY L Sbjct: 423 SGLT-VDVSGFEVEMEEQRNRSKDAHETIDL-TVQGSLDKLAENIHPTAFLGYSELVS-- 478 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++VK I+ +G+ VE A +G KV++V DQTPFYAE+GGQ Sbjct: 479 ---------------------EAVVKVILIEGKSVESAEAGTKVQIVLDQTPFYAESGGQ 517 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G +++ DV +K IF+H VERGIL M++ ID RR+ NH Sbjct: 518 IGDRGFLSFGDTVVRVKDV-QKESNIFIHLGKVERGILTVGMTVNAQIDRACRRRAQANH 576 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL I+ +SQ GS ++ + LRFD + +T E++ +ED VN IA+ Sbjct: 577 TATHLLQSALKLIVDPTISQAGSLVSFERLRFDFNCPRSLTPEEVQQVEDQVNSWIAEAH 636 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 P + M EDA GA A+ G KY+D VRVV S LCGGTHV++T EI L Sbjct: 637 PAIVAEMPLEDAKNKGATAMFGEKYSDVVRVVDYAG-----VSMELCGGTHVNNTAEIGL 691 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSE+ I +GIRRIEA+ GQ +L +D +K L K + R+ + E Sbjct: 692 FKIVSETGISSGIRRIEAVAGQSVLDYLKVRDNVVKELGDRFKAKPEELPERITNLQNEL 751 Query: 768 RKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q K +L + I D+ + + VD+ LK + LQ+K+ Sbjct: 752 KATQKQLEAAKGELAIAKSDQLLAEAETIGDIKILVAELPGVDADSLKKAAERLQQKLGE 811 Query: 823 GIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ++L +E K S++ + + + A AK+ GGGG GGRP+ AQ+GG Sbjct: 812 SAVVLGSSPEEGKVSLVAAFSAKVHKEKKLQAGKFIGNIAKICGGGG-GGRPNFAQAGGR 870 Query: 881 NGNKADQAIAGVASFL 896 + +K +A+ + L Sbjct: 871 DASKLSEALDTAKTQL 886 >gi|16800607|ref|NP_470875.1| alanyl-tRNA synthetase [Listeria innocua Clip11262] gi|20532255|sp|Q92BK9|SYA_LISIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|16414012|emb|CAC96770.1| alanyl-tRNA synthetase [Listeria innocua Clip11262] Length = 879 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 347/916 (37%), Positives = 514/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSEDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDESDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ++G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++ + G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L ++F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNTTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E SG + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVDEVASGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V+ M +A GA AL G KY + VRVV V G +S LCGG HV +T +I L Sbjct: 628 VIIEEMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVRRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L + + K +++ V+ED + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 VLVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|42520697|ref|NP_966612.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila melanogaster] gi|48428514|sp|P61709|SYA_WOLPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|42410437|gb|AAS14546.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 877 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 395/899 (43%), Positives = 556/899 (61%), Gaps = 51/899 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR F++FF N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K + Sbjct: 1 MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE LD Sbjct: 61 VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL ITVY D+EA+++W+KISG S+DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG- 179 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + +EG+R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q Sbjct: 180 ------SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF LI S++ G N + H++I DHLR+++FLIA+G+LP NEGR YVL Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFG 359 RR++RRA Y LLGY + L+ + P L SAY EL++AK LIE TL+SE+E F Sbjct: 291 RRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFK 350 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL +G+ LL+ + L + L G+ AFKLYDT+G PLDI D+L + D F+ Sbjct: 351 DTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDVLKEK-KINFDQKGFD 409 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ RARA G G + E++WF L K+G T+F+GY+ Sbjct: 410 DAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYE------------------ 451 Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + AIV + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I Sbjct: 452 ----FNEVSDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 507 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + I + K +++H IV+ G + ++ +ID + R+ L NHSATHLLH L Sbjct: 508 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLR 567 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV+Q GS + PD LRFD +H+ +T +L +ED VN +I +NL T+I + Sbjct: 568 KILGDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQ 627 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI GA AL G KY ++VRVV + S LCGGTHV TGEI L IV+ESS+ Sbjct: 628 AIDEGAMALFGEKYGNQVRVVKIGD------SRELCGGTHVEHTGEIGLFKIVTESSVAF 681 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TGQ A +++ + LK +A F+K + R+ + +E++K + Sbjct: 682 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLY 741 Query: 779 LQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 +L + E++ +I +NF+SH +++ + ++ + LQ++ +I K+ K Sbjct: 742 KKLVSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKD-KTV 798 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++I V++DL+++ +A +L ++ K GG +AQ G + NK D AI + S + Sbjct: 799 LIIKVSKDLINKISAKELISIAVK----KNCGGNAELAQ-TGCDSNKIDDAITAIYSKI 852 >gi|99036095|ref|ZP_01315128.1| hypothetical protein Wendoof_01000018 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 877 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 396/899 (44%), Positives = 556/899 (61%), Gaps = 51/899 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR F++FF N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K + Sbjct: 1 MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE LD Sbjct: 61 VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL ITVY D+EA+++W+KISG S+DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG- 179 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + +EG+R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q Sbjct: 180 ------SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF LI S++ G N + H++I DHLR+++FLIA+G+LP NEGR YVL Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFG 359 RR++RRA Y LLGY + L+ + P L SAY EL++AK LIE TL+SE+E F Sbjct: 291 RRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFK 350 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL +G+ LL+ + L + L G+ AFKLYDT+G PLDI DIL + D F+ Sbjct: 351 DTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDILKEK-KINFDQKGFD 409 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ RARA G G + E++WF L K+G T+F+GY+ Sbjct: 410 DAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYE------------------ 451 Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + AIV + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I Sbjct: 452 ----FNEVSDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 507 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + I + K +++H IV+ G + ++ +ID + R+ L NHSATHLLH L Sbjct: 508 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLR 567 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV+Q GS + PD LRFD +H+ +T +L +ED VN +I +NL T+I + Sbjct: 568 KILGDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQ 627 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI GA AL G KY ++VRVV + S LCGGTHV TGEI L IV+ESS+ Sbjct: 628 AIDEGAMALFGEKYGNQVRVVKIGD------SRELCGGTHVEHTGEIGLFKIVTESSVAF 681 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TGQ A +++ + LK +A F+K + R+ + +E++K + Sbjct: 682 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLY 741 Query: 779 LQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 +L + E++ +I +NF+SH +++ + ++ + LQ++ +I K+ K Sbjct: 742 KKLVSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKD-KTV 798 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++I V++DL+++ +A +L ++ K GG +AQ G + NK D AI + S + Sbjct: 799 LIIKVSKDLINKISAKELISIAVK----KNCGGNAELAQ-TGCDSNKIDDAITAIYSKI 852 >gi|323692006|ref|ZP_08106254.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673] gi|323503929|gb|EGB19743.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673] Length = 879 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 342/907 (37%), Positives = 509/907 (56%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P VTT Sbjct: 6 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF +W K G+ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RYIE+WN VF QF L +IDTGMGLER+A V+QE Sbjct: 181 GCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ ++ KY+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 241 SLFTVDTNKALLDRVCELAHTKYQEDHETDVSLRIVADHIKSCTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + + LG M L + YPEL + +I + L E+++F Sbjct: 301 VLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEEDKFN 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + + +L+GD AFKLYDT+G P+D+ ++IL + L+ +D Sbjct: 361 KTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LDEDG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F A+++Q+ +ARA + + + T+F GY L Sbjct: 420 FTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGYGKL-------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + + EIVE GQ ++ +TPFYA GGQ D G Sbjct: 466 ---------AEESEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVITAQ 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + D K G H V +G+ +T ++ L +D +NR NHSATHLLH AL Sbjct: 517 DAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG+HV Q GS +T D LRFD TH +T E+ ++E VND IA LPV T +M + Sbjct: 577 RTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVMTLD 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV + G S+ LCGGTHV +T I IVSE+ I Sbjct: 637 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEAGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T ++ +++L A +K + + ++E + +E + L + K Sbjct: 692 AGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSENEKL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + L ++ V ++ + +VD L+++ D L++K+ G++++ + + Sbjct: 752 KSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIASV-Q 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ VT + + +A +L + A ++GGGG GGRP+MAQ+GG N A+ Sbjct: 811 DGKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGIPDALKK 869 Query: 892 VASFLKK 898 A +++ Sbjct: 870 AAETVRE 876 >gi|16331117|ref|NP_441845.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803] gi|2500959|sp|P74423|SYA_SYNY3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1653611|dbj|BAA18523.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803] Length = 877 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 351/901 (38%), Positives = 512/901 (56%), Gaps = 50/901 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 IR FL FF H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ + TT Q Sbjct: 12 EIRQQFLNFFADRQHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKSAEFPRATTSQ 70 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI AW+L T+ F L RL Sbjct: 71 KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKSQAIAWAWELSTQVFKLPAERL 126 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++V++ED+EAF +W+ G+ A +I R+ +DNFW TGPCGPCSEI++D + G Sbjct: 127 VVSVFEEDDEAFAIWRDEIGIPAHRIQRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-G 185 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 E+ R+IE +NLVFMQ+ + N L K +IDTGMGLERMA +LQ+ NNY+ Sbjct: 186 DEKLDLEDDSRFIEFYNLVFMQYNRDNAGNLTPLEKKNIDTGMGLERMAQILQKVPNNYE 245 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +IQ + + G+ Y N + +VI DH+RS +IADGI +N GRGYVLR Sbjct: 246 TDLIFPIIQTAANIAGIDYAQANEKTKVSLKVIGDHVRSVVHMIADGISASNLGRGYVLR 305 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RLLG + YP +++ + LIE+ L+ E+ F KTL Sbjct: 306 RLIRRVVRHGRLLGINGEFTTKVAATAVQLAQPVYPNVLERQSLIEQELQREEAAFLKTL 365 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LL +++ + + G AF LYDT G PL++ Q+I +G+ +D+ F +A+ Sbjct: 366 ERGEKLLADLMADGVTE--IAGADAFTLYDTFGFPLELTQEIAEEQGIT-VDVEGFEKAM 422 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 +EQ+ R++A + E + L T+F+GY L+ Sbjct: 423 QEQQERSKAAHETIDLTVQESLD-KLANHIHPTEFLGYTDLQS----------------- 464 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S+IVKA++ GE+V++AV+GQ V++V DQTPFY E+GGQ+GD G GD + ++ Sbjct: 465 ------SAIVKAVLVGGELVDQAVAGQTVQIVLDQTPFYGESGGQIGDKGFLNGDNLLIR 518 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 I DV K+ GIF+H VERG ++ ++ TID RR+ NH+ATHLL AL ++ Sbjct: 519 IEDV-KRESGIFIHFGRVERGTVQIGTTITATIDRACRRRAQANHTATHLLQSALKRVVD 577 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 +SQ GS + + LRFD + +T EL+ IED +N IA+ +M DA A Sbjct: 578 EGISQAGSLVDFNRLRFDFNSPRAVTMEELQQIEDLINQWIAEAHQTEVAVMPIADAKAK 637 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ G KY VRV+ V S LCGGTHV++T EI L IV+E+ I AG+RR Sbjct: 638 GAIAMFGEKYGAEVRVIDVPG-----VSLELCGGTHVANTAEIGLFKIVAETGIAAGVRR 692 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G +L ++ +K L LK + RV ++ +E + Q K +L Sbjct: 693 IEAVAGPSVLDYLNVREAVVKELGDRLKAKPEEIPDRVHQLQQELKASQKQLEALKQELA 752 Query: 783 VEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ + + + + VD + LK+ + LQ+K+ ++L I +E K S Sbjct: 753 LQKSEQLLTQAQTVGEFKILVADLGTVDGESLKTAAERLQQKLGESAVVLASIPEEGKVS 812 Query: 838 VLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ + L + A AK+ GGGG GGRP++AQ+GG + +K +A+A Sbjct: 813 LVAAFSPQLVKTKQLKAGQFIGAIAKICGGGG-GGRPNLAQAGGRDASKLPEALATAKQT 871 Query: 896 L 896 L Sbjct: 872 L 872 >gi|262066712|ref|ZP_06026324.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] gi|291379511|gb|EFE87029.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] Length = 867 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 329/909 (36%), Positives = 511/909 (56%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K NN++ DL +++ + ++TG +Y + +VI DH R+ +FL+ DG++P+NE Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKNSETNFSLKVITDHARAVTFLVNDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +K+G T+F GY+ ++ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYENIQDEAKLLSSR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 EA G K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H +E+G + L ++ R + NH+ATHLL Sbjct: 504 IYSDDFSAKVLDV-QKQKDIFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + PD LRFD +H + +T+ +L IE+ VN+ I + + VV Sbjct: 563 HKALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIEVVVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY + VRVV V S+ LCGGTH+ + +I L IVSE Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + + LK + LK S NVV +VE+ E ++ + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKETERE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K ++ + + +I V + + +++L++++D ++ + +++L Sbjct: 738 LETLKQKIALFETKAALSGMEEINGVKVLVAAFKDKKAEDLRTMIDTIKDNNEKAVVVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K S + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + +K A Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854 Query: 889 IAGVASFLK 897 + + ++ Sbjct: 855 FKEIRATIE 863 >gi|291485146|dbj|BAI86221.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195] Length = 878 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 344/915 (37%), Positives = 520/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A+E ++G Y +N +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L ++ +++G FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F + + +QR RAR +GS + +L++ + F+GY + Sbjct: 414 NMT-VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTKAD-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + ++Q G+++EEA G+ V+++ D+TPFYAE+GGQ+ Sbjct: 469 ---------------------ANIIVLLQDGQLIEEAYEGESVQIILDETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ Sbjct: 508 GDKGYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TGQ A + Q LK A LK + V RV + E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + Q + +L + ++ VN ++ ++ D L++++D L+ K+ S Sbjct: 743 EAQRENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+++ +A L + +A+V GGGG GGRP MAQ+GG Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+A V ++K Sbjct: 861 EKLEEALASVEDWVK 875 >gi|260494135|ref|ZP_05814266.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33] gi|260198281|gb|EEW95797.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33] Length = 867 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 334/909 (36%), Positives = 509/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLTNGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 EA G K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDNFIGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLEVDIVRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSE Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA TG A + + LK + LK + N++ +VE+ E + + Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I + + +++L++++D ++ + + II+L Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVREIIE 863 >gi|331002247|ref|ZP_08325766.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411341|gb|EGG90757.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str. F0167] Length = 885 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 345/908 (37%), Positives = 517/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 V+ IR FL+FF++ GH + S SL+P ND +L+ NSGM P K FTGQE P + V Sbjct: 10 KGVNRIRKKFLDFFEEKGHLSMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRV 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 70 CTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLD 125 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY +VY ED+EAF++W K G+ A++I + DNFW E GPCGPCSE+++D+GE Sbjct: 126 ANRLYPSVYLEDDEAFEIWNKEIGIPAERIFKFGKEDNFWEHGE-GPCGPCSEVYYDRGE 184 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+E+WN VF QF K L + +IDTGMGLER+A LQ+ Sbjct: 185 KYGCGKPSCTVGCDCDRYMEVWNNVFSQFNSDGKGNYTELVQKNIDTGMGLERLAVALQD 244 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +++D K L+ + Y+ + ++ R+I DH+RS +F+I+DGI+P+NEGR Sbjct: 245 VESIFEVDTIKSLLDRVAALAKTSYKEDAKKDISLRLITDHIRSCTFMISDGIMPSNEGR 304 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG + + L + YPEL + K +I + L E+ + Sbjct: 305 GYVLRRLLRRAARHGRMLGIKDTFLASLANTVIELSKDGYPELEEKKEMILKVLTEEENK 364 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L + +L K +++++G+ AF+LYDT+G PLD+ ++I+ +G +D Sbjct: 365 FDKTIDQGLSILSEIEENLTKSGEKVISGEDAFRLYDTYGFPLDLTKEIIEEKGFT-VDE 423 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+A+E QR++ARA + + + + F GYD L Sbjct: 424 AGFNKAMEAQRNQARAARKATNYMGADVTIYQSLDPKLTSVFEGYDSLLD---------- 473 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + A+ + EIVE G ++ D+T FYA GGQ D G Sbjct: 474 -------------TGKITALTTEDEIVEAIAEGDHGTIILDKTSFYATMGGQNADIGLIK 520 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + DV K + H V +G+ + ++ +D NR++ + NHSATHLLH Sbjct: 521 KDDAVFNVVDVIKLSGDKIGHVGFVTKGMFKLGDTVETVVDADNRKKTAANHSATHLLHK 580 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + D LRFD TH K +T E+ ++E+ VN I + LPVVT +MN Sbjct: 581 ALREVLGNHVEQAGSYVAADRLRFDFTHFKSLTKEEIANVEEIVNAEINKALPVVTDVMN 640 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA SGA AL G KY VRVVS+ G S LCGGTHV +T +I L ++SE+ Sbjct: 641 VEDAKKSGAMALFGEKYRGDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKVLSENG 695 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG+ + +++ +A LK + ++ + E + +E + L+ + Sbjct: 696 IAAGVRRIEALTGEGVIEFYQDIESRMQKMAELLKTGEAELITKAESLLDEMKTLKSENE 755 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K +L E L + I V F++ +S V+ EL+++ D L+ + G+++L Sbjct: 756 KLKAKLASEALGDSAENIETINGVKFIAMQVSGVEMNELRNLGDKLKNDVDDGMVVLAS- 814 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K ++L + ++ L +A ++ + A ++GGGG GGRP++AQ+GG N A+ Sbjct: 815 DVDGKVNLLCMAGDNALKAGAHAGNIIKAIATLVGGGG-GGRPNIAQAGGKNPAGIKDAL 873 Query: 890 AGVASFLK 897 K Sbjct: 874 DKAKEEFK 881 >gi|158320695|ref|YP_001513202.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] gi|205829976|sp|A8MGI3|SYA_ALKOO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158140894|gb|ABW19206.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] Length = 880 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 352/910 (38%), Positives = 520/910 (57%), Gaps = 50/910 (5%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR FLEFF+ H + PS+ L+P D +L+ NSGM P K F G E+P Sbjct: 1 MKKLGVNEIRKEFLEFFRSKEHIIHPSAPLVPQKDKSLLLINSGMAPLKPYFAGLEEPPG 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + + T QKC+R G D++NVGRT RH TFFEMLGNFSFG YFK+ ++ W+ +TK Sbjct: 61 KRMATCQKCIRTG----DIENVGRTARHATFFEMLGNFSFGDYFKKESLTWGWEFVTKNL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L +L+ TVY +D+EAF++W K GL ++I+R+ DNFW + GPCGPCSEI+FD Sbjct: 117 ELPVDKLWATVYVDDDEAFEIWNKQIGLPEERIVRLGKADNFWEIG-LGPCGPCSEIYFD 175 Query: 179 QGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G E +RY+E WN VF QF++ + LP +IDTGMGLERMA + Sbjct: 176 RGEDYGCGCEECKPGCECDRYVEFWNHVFTQFDRDEEGNYHPLPNPNIDTGMGLERMACI 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q + +DID + ++ + ++T +Y+ + V+ R+I DH+RS S +I DGILP+N Sbjct: 236 MQGVDSIFDIDTMQDILNSVCKITSSEYKKDERTDVSIRIITDHVRSISLMIGDGILPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + +LLG + L+ + G Y EL+ K I+ ++ E Sbjct: 296 EGRGYVLRRLLRRAARHGKLLGVNRAFLYELVDRVADNYGETYVELVDNKDYIKRVIKVE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T+D+G+ +L+ + L K+ +L+G AFKLYDT+G P D+ ++IL +GL+ Sbjct: 356 EERFMETIDQGMDILNQYIEELVTLKETVLSGVNAFKLYDTYGFPFDLTKEILEEKGLS- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +E+QR RAR +G + ++ FS +K T F GY Sbjct: 415 LDETGFESEMEKQRQRARDARIGADTEGWKEDIFSGLDKEIQTAFKGYTNFE-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V V AIV +VE+ G++ V+ D+T FY E GGQ+GD G Sbjct: 467 ---------------VEGKVLAIVSNDTVVEQCDKGKEATVILDETAFYGEGGGQVGDIG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + +RL + D +K H VE G ++ + +D R + NH+ATHL Sbjct: 512 TLYNEAVRLSVLDTKKGPHNQVHHVVRVEEGTIKIGDEVKAKVDMVTRMSTARNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL I+G HV Q GS +TPD LRFD TH + +T ++ IE+ VN I L V T Sbjct: 572 LHKALRDIVGEHVHQAGSLVTPDRLRFDFTHFEGLTKDQITQIEEKVNQQILMALDVRTF 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + EDA GA AL G KY D VRVV V G +S+ LCGGTHV+++GEI + ++S Sbjct: 632 ETSIEDAKKIGAQALFGEKYGDVVRVVKV-----GEYSTELCGGTHVTNSGEIGMFIMLS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEAITG A ++ + ++ +A LK NVV RV ++ E ++ Sbjct: 687 EAGVAAGVRRIEAITGMEAYKYVQKNQKTIQEIADTLKTQVQNVVERVADLVHETKEKDR 746 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K QL + +N + ++ + +L+ + D L++KI SG+I+L Sbjct: 747 EINKLKSQLASNSTGDILDKATVVGGINVVVEVLENQEMDDLRKIGDVLKEKIGSGVIVL 806 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 +++ K + + + T+D + +A +L + +AK+ GGGG GGRP MAQ+GG N K Sbjct: 807 GSSNQD-KVNFVAMATKDAVSKGVHAGNLVKEAAKIAGGGG-GGRPDMAQAGGKNPQKIQ 864 Query: 887 QAIAGVASFL 896 +A+ V L Sbjct: 865 EALDTVKEIL 874 >gi|294783331|ref|ZP_06748655.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] gi|294480209|gb|EFG27986.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] Length = 867 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 329/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K NN++ DL +++ + ++TG +Y + +VI DH R+ +FL+ DG++P+NE Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKSSETNFSLKVITDHARAVTFLVNDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+V+FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEVSFKLYDTYGFPYELTEEIAEERGVTVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +K+G T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYEKTEDEATLLSSR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 EA G K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H +E+G + L ++ R + NH+ATHLL Sbjct: 504 IYSDNFSAKVLDV-QKQKDIFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + D LRFD +H + +T+ +L IE+ VN+ I + + VV Sbjct: 563 HKALREVVGTHVQQAGSLVDSDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY + VRVV V S+ LCGGTH+ + +I L IVSE Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + + LK + LK S NVV +VE+ E + + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDTEKS 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K ++ + + +I + + + +L++++D ++ + I++L Sbjct: 738 LETLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K S + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + +K A Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854 Query: 889 IAGVASFLK 897 + + + ++ Sbjct: 855 LKEIRATIE 863 >gi|196250079|ref|ZP_03148773.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16] gi|196210263|gb|EDY05028.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16] Length = 878 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 360/915 (39%), Positives = 523/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ+ N++ DLF +I+A+EQ+ G +Y + N V +VI DH+R+ +F + DG Sbjct: 234 MCSILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL GL +L V+ K ++ G+ AF+LYDT+G PL++ ++ Sbjct: 354 IRTEEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G++ +D F + +E QR RARA + S + L + ++F+GYD L Sbjct: 414 GMS-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 VSS V AI++ G+ VEE +G++ +++ D TPFYAE+GGQ+ Sbjct: 466 ------------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G+ + DVQK G +H +VERG ++ +D R Q+ NH+ Sbjct: 508 ADQGVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E R Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELR 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + ++ V ++ + D +L+++ D L++K+ + Sbjct: 743 QLQRENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+ + ++A L + A GGGG GGRP MAQ+GG + Sbjct: 803 VIVLAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKDA 860 Query: 883 NKADQAIAGVASFLK 897 NK +A+ V +++K Sbjct: 861 NKVGEALDYVETWVK 875 >gi|327439562|dbj|BAK15927.1| alanyl-tRNA synthetase [Solibacillus silvestris StLB046] Length = 890 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 339/924 (36%), Positives = 507/924 (54%), Gaps = 69/924 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +L FF++ GH + PS+ L+P NDP+L++ NSG+ K F G+ P + Sbjct: 6 MTGSEIRRLYLNFFKEKGHHIEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRI 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ +I AW+ LT K Sbjct: 66 TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKESIHYAWEFLTDPKWMG 121 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L +T++ ED+EA+ +W G+ +++IR+ NFW + E GP GP SEIF+D+ Sbjct: 122 FDPEKLSVTIHPEDQEAYDVWHNEIGIPKERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 178 Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 GE G P + E ERY+EIWNLVF QF LPK +IDTGMGLER+ + Sbjct: 179 GEEYGVGAPEEEMYTGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 238 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281 V+Q N+D DLF +I+ +E Y+ + V+ +VI DH+R+ Sbjct: 239 VVQNVPTNFDTDLFMPIIEKTETFANRTYKRPHEVDLNEIFGSTEDVNTPFKVIADHIRT 298 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YP++ Sbjct: 299 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKKIGIEKPFMFELVPTVGEIMHDFYPQVK 358 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+ +++E+ RF +TLD GL + + V + ++ G AF+LYDT G P++ Sbjct: 359 EKEAFIQRVIKNEEVRFHETLDGGLAIFNEVAESQKAKGETVIPGADAFRLYDTFGFPIE 418 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D F ++E+QR RAR + S + L + FI Sbjct: 419 LTEEYAEEVGMT-VDQEGFEASMEQQRERARNARADVDSMQVQNEV--LSNLTQQSTFI- 474 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L S+ V AIV G+ A G++ V+ +TP Sbjct: 475 YDALE-----------------------ASAKVAAIVVNGQETSTASEGEEALVILSETP 511 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQ+ DTG DG + DVQK G +H +VE G + ++ Sbjct: 512 FYAEMGGQIADTGIIKADGFTAIVKDVQKAPNGQPLHTVVVESGEMNVGDIATAKVEEAK 571 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + NH+ATHL+H AL +LG HV+Q GS + PD LRFD +H T EL +E V Sbjct: 572 RKLILKNHTATHLMHRALKDVLGDHVAQAGSYVGPDRLRFDFSHFGAATKEELAQVERAV 631 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I +++ VV + M+ + A A GA AL G KY D VRVV+V +S LCGG HV Sbjct: 632 NEKIWEDIEVVIQEMDIDSAKAMGAMALFGEKYGDVVRVVAV-----SDYSIELCGGLHV 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 S + EI + IVSES I AG RRIEA+TG+ A + ++ L A LK + +V R Sbjct: 687 SRSSEIGIFKIVSESGIGAGTRRIEAVTGKAAYEAIKEEEAILNEAAGLLKSNAKDVATR 746 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMD 814 V + +Y++LQ + ++ + KI DV ++ + D+ +L+ +MD Sbjct: 747 VATLQADYKELQRENDSLSQKIANAQAGAVLDAAQKIGDVTVLATRVEAKDNNQLRQMMD 806 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 L++K++S +I+L + + K + VT+D++ ++A ++ + A+ GG GGGRP Sbjct: 807 DLKEKMESAVIVLGAVDGD-KVMLCAGVTKDIVGGNYHAGNIVKQVAEAC-GGKGGGRPD 864 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MA +G + +K + A+ V +K Sbjct: 865 MAMAGAKDASKLEDALNAVYEHVK 888 >gi|321312266|ref|YP_004204553.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5] gi|320018540|gb|ADV93526.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5] Length = 878 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 344/915 (37%), Positives = 519/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A+E ++G Y +N +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L ++ +++G FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F + + +QR RAR +GS + +L++ + F+GY + Sbjct: 414 NMT-VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTQAD-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + ++Q G+++EEA G+ V+++ D+TPFYAE+GGQ+ Sbjct: 469 ---------------------ANIIVLLQDGQLIEEAHEGESVQIILDETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ Sbjct: 508 GDKGYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TGQ A + Q LK A LK + V RV + E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 Q + +L + ++ VN ++ ++ D L++++D L+ K+ S Sbjct: 743 DAQRENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+++ +A L + +A+V GGGG GGRP MAQ+GG Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+A V ++K Sbjct: 861 EKLEEALASVEDWVK 875 >gi|289434784|ref|YP_003464656.1| hypothetical protein lse_1419 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171028|emb|CBH27570.1| alaS [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 879 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 346/916 (37%), Positives = 516/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W++ GL+ + I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ++G+KY E N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEYV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + I+Q +V+E +G + +++F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYIIQNDALVDEVAAGSEAQLIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H +V+ G+L T ++ L+++ RR+ NH+ Sbjct: 508 ADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVNKVKRRETVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNKKIWEQIA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + ++E + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTTTKETPQKIELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I VN ++ ++ D +L+ +D + K G Sbjct: 743 EVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+ED + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGSALDYVSTWVKE 876 >gi|239827827|ref|YP_002950451.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70] gi|239808120|gb|ACS25185.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70] Length = 877 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 353/915 (38%), Positives = 519/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRKMFLDFFKEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +T++ ED+EAF++W K GL ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPDRLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEEFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ N++ DLF +I+A+EQ++G KY + V +VI DH+R+ +F I DG Sbjct: 234 MCSILQGVPTNFETDLFMPIIRATEQISGEKYGVDKEKDVAFKVIADHIRAVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLHIERPFMYELVPVVGEIMNDFYPEVKEKAAFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL GL +L V+ I++G+ F+LYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLHEGLAILASVIQKEKERGSNIISGEDVFRLYDTYGFPVELTEEYAHEE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RARA + S + L + ++F+GYD L Sbjct: 414 GME-VDHDGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKTESEFVGYDQL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V IV+ G++V E G++ +++ D TPFYAE+GGQ+ Sbjct: 466 ------------------HAQSTVAVIVKDGQLVNEVKEGEEAQIILDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + + DVQK G +HH IVE+G LR + ID R + NH+ Sbjct: 508 ADQGWIENETTKAFVKDVQKAPNGQHLHHIIVEKGTLRKGETYTAQIDEAKRASIIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD +H + EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VEIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ +A LK + +V R++ + E R Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQITLLQEVAQKLKTNPKEIVNRIDALMNEIR 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + ++ + ++ ++ D L++++D L++K+ S Sbjct: 743 QLQRENESLAARLGNMEAANLVNKVKEVNGIPVLASKVNANDMNHLRTMVDELKQKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + E K +++ +T DL+++ ++A L + A GGGG GGR MAQ+GG + Sbjct: 803 IIVLAAVQGE-KVNLIAGITNDLIEKGYHAGKLIKEVAVRCGGGG-GGRADMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 +K +A+ V ++K Sbjct: 861 SKVGEALQYVEQWIK 875 >gi|152976803|ref|YP_001376320.1| alanyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|205829984|sp|A7GT67|SYA_BACCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152025555|gb|ABS23325.1| alanyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98] Length = 880 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFKEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWHEKIGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDPSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQNVPTNFDTDLFMPMIGATESISGEKYRSGDAEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNMNRPFMYELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPVELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHAGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D+G + DG+++ + DVQK G +H +VE G+L + ++ ID +NR + NH Sbjct: 508 IADSGYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGVLTKDATVKAVIDTKNRSSIVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTAERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKAAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + + + +N ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDAVVSVDGINVLATKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +I+L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVIVLAAV-NDDKVNILAGVTKDLVGQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + D+A+A V ++K Sbjct: 861 PAQVDEALAFVQEYVK 876 >gi|16079794|ref|NP_390618.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221310677|ref|ZP_03592524.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221315000|ref|ZP_03596805.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319921|ref|ZP_03601215.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324202|ref|ZP_03605496.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi|3122886|sp|O34526|SYA_BACSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2635186|emb|CAB14682.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] Length = 878 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 344/915 (37%), Positives = 519/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A+E ++G Y +N +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L ++ +++G FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F + + +QR RAR +GS + +L++ + F+GY + Sbjct: 414 NMT-VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTVESTFVGYSQTKAD-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + ++Q G+++EEA G+ V+++ D+TPFYAE+GGQ+ Sbjct: 469 ---------------------ANIIVLLQDGQLIEEAHEGESVQIILDETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ Sbjct: 508 GDKGYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TGQ A + Q LK A LK + V RV + E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 Q + +L + ++ VN ++ ++ D L++++D L+ K+ S Sbjct: 743 DAQRENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+++ +A L + +A+V GGGG GGRP MAQ+GG Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+A V ++K Sbjct: 861 EKLEEALASVEDWVK 875 >gi|28210757|ref|NP_781701.1| alanyl-tRNA synthetase [Clostridium tetani E88] gi|41018208|sp|Q896F2|SYA_CLOTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28203195|gb|AAO35638.1| alanyl-tRNA synthetase [Clostridium tetani E88] Length = 879 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 336/907 (37%), Positives = 521/907 (57%), Gaps = 48/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L FF+ GH + S SL+P ND +L+ N+GM P K FTG + P V Sbjct: 4 MGLNEIREAYLNFFEGKGHLRMESFSLVPKNDKSLLLINAGMAPLKPYFTGVQTPPKSRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +TK ++ Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKCEVIPWAWEFVTKSLNIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180 + +LY+T+Y +D+EA+ +W K + + +I R+ DNFW + + GPCGPCSEI + + G Sbjct: 120 KDKLYVTIYLDDDEAYDIWTKSTDIDPSRIFRLGKEDNFWEIGQ-GPCGPCSEIHYQREG 178 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I + + + IE WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 EKINSVEEFIKKSDDDEVIEFWNLVFTQFDKDENENYNRLAHPNIDTGMGLERMATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +++D K ++ ++ +KY ++ RVI DH+RS +F+I+DGILP+NEGR Sbjct: 239 VNSIFEVDTIKAVLDEISEIANIKYGENKEKDISLRVITDHVRSVTFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG + + + AY EL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRASRHGKLLGIKGNFLYKVCKVVIENSHKAYKELKEKEEYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + L +++L GD AFKLYDT+G P+++ ++IL + ID Sbjct: 359 FAETIDGGIQILNEYVDELINKGEKVLPGDKAFKLYDTYGFPIELTKEILEEKS-IDIDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + +E Q+ RARA +E + T+F+GY L Sbjct: 418 GGFTKEMEAQKQRARAAREETNYMGSEDTIINKLPIELQTEFLGYSEL------------ 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V + + AI++ E+VEE G K ++ D+TPFY+E GGQ+GDTG Sbjct: 466 -----------SVEAKIIAIIKGEELVEELKQGDKGIIIVDKTPFYSEKGGQIGDTGILA 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++I D + G +H + G ++ + ++ LT+D R + NHSATHLLH Sbjct: 515 GKNVKVKIQDCRNNISGKILHFVEILEGSIKLQDTVNLTVDRLRRDAIRKNHSATHLLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL I+G+H+ Q GS + LRFD H +T ELK++E VN I + +PV T++MN Sbjct: 575 ALKKIVGAHIEQAGSFVDEHRLRFDFNHFSSLTKEELKNVEKLVNKKIMEVIPVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A SGA AL KY+++VRVVS+ G S LCGGTHVS++GEI L I+SE+ Sbjct: 635 IEEAKESGAVALFDEKYDEKVRVVSL-----GDFSKELCGGTHVSNSGEIGLFKIISETG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIE +TG A ++ ++ L+ L LK S +++ + EE + + Sbjct: 690 VAAGVRRIEGVTGFNALKYIEEKEALLEGLCEVLKCSNKDIINKATSQIEEIKNKEKEIN 749 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + ++ + +S ++ ++D L+ + D L+ KIQ G+++L + Sbjct: 750 NLKSKLASGSQEDILKNIKEVKGIKLVSGVLKDIDGGALRDLADKLRDKIQEGLVVLASV 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K + + T++ + + + + + A + GGGG GGRP MAQ+GG N KA++AI Sbjct: 810 -GEGKIQFVAMATKEAVAKGAHCGKIIKEVASIAGGGG-GGRPDMAQAGGKNPEKAEEAI 867 Query: 890 AGVASFL 896 A V L Sbjct: 868 AKVEDIL 874 >gi|303230862|ref|ZP_07317609.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514622|gb|EFL56617.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] Length = 872 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 339/910 (37%), Positives = 500/910 (54%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQH 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+KY N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CKTNFETDLIFPIIKATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ A++EQR RAR + + LK++ Sbjct: 413 EGFDAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ +S V + + E ++ AV G ++ V+ TPF+AE GGQLGDTG + Sbjct: 449 ----ELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GSMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 565 ALKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SES Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A ++ +AS LK V R+ ++ E ++ Sbjct: 680 IGSGVRRIEAITGRAALDAAKHDRLTIERIASELKTKPAQVEERLHQVLAEAKETAKELD 739 Query: 776 KRKLQLN---VEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +++ D+ K I DV F++ + EL+ D K+ SG++++ Sbjct: 740 QIRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++D++ A ++ + +A+ + GG GGGRP MAQ+GG K A Sbjct: 800 AMGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMDA 858 Query: 889 IAGVASFLKK 898 + +K+ Sbjct: 859 LKAAGEAVKE 868 >gi|257452890|ref|ZP_05618189.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|317059432|ref|ZP_07923917.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|313685108|gb|EFS21943.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] Length = 866 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 322/910 (35%), Positives = 501/910 (55%), Gaps = 58/910 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF+ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK AI +W+ +T+ L Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKREAIVWSWEFVTEVLGL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEDCHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + RYIEIWNLVF ++ + LPK +IDTG GLER+A ++ Sbjct: 176 PEYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K+NN++ DL L++ + ++T KY + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + RLLG E + ++ + + AYP+L I++ ++ E+ Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + + L+G++ FK+YDT+G P ++ ++I RG + Sbjct: 356 EKFSNTLDQGIQLVNEQIEMALQAGKSSLDGEITFKMYDTYGFPYELTEEICNERG-IAV 414 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +K+G T+F GY + R Sbjct: 415 SQEEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHSTEEKAKLLNIR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + ++FD+TPFY E+GGQ+GD G Sbjct: 475 Q-------------------------------KEDGTLLLIFDKTPFYGESGGQVGDHGS 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + ++ DV KK + IF H V G LT+D + R +S NH+ATHLL Sbjct: 504 ISSEAFQGKVLDV-KKQKEIFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + LRFD +H + +T +++ +E+ VN+ I++ + V Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 E+A A GA L G KY D VRVV V S+ LCGG HV + G I L IVSE Sbjct: 623 KTMEEAKACGAMMLFGDKYGDVVRVVHVPG-----FSTELCGGIHVENIGHIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + LK A LK ++ +VE++ +E ++ Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKARE 737 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K ++ ++ +IADV + +L+ ++D ++ K ++ I++L Sbjct: 738 ITSLKDKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S + V++ L ++ A +L +++A+ + GG GGG+P AQ+GG + +K ++A Sbjct: 798 STFE--KLSFAVGVSKALTGKYKAGNLVKIAAE-ITGGKGGGKPDFAQAGGKDKSKIEEA 854 Query: 889 IAGVASFLKK 898 + + +K+ Sbjct: 855 MEAIKKAIKE 864 >gi|257466745|ref|ZP_05631056.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|315917894|ref|ZP_07914134.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|313691769|gb|EFS28604.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] Length = 866 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 320/910 (35%), Positives = 501/910 (55%), Gaps = 58/910 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF+ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI +W+ +T+ L Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEDCHFPRERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + RYIEIWNLVF ++ + LPK +IDTG GLER+A ++ Sbjct: 176 PEYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K+NN++ DL L++ + ++T KY + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + RLLG E + ++ + + AYP+L I++ ++ E+ Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + + L+G++ FK+YDT+G P ++ ++I RG + Sbjct: 356 EKFSNTLDQGIQLVNEQIEMALQAGKSSLDGEITFKMYDTYGFPYELTEEICNERG-IAV 414 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +K+G T+F GY + R Sbjct: 415 SQEEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHSTEEKAKLLNIR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + ++FD+TPFY E+GGQ+GD G Sbjct: 475 Q-------------------------------KEDGTLLLIFDKTPFYGESGGQVGDHGS 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + ++ DV KK + IF H V G LT+D + R +S NH+ATHLL Sbjct: 504 ISSEAFQGKVLDV-KKQKEIFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + LRFD +H + +T +++ +E+ VN+ I++ + V Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 E+A GA L G KY D VRVV V S+ LCGG HV + G I L IVSE Sbjct: 623 KTMEEAKVCGAMMLFGDKYGDVVRVVHVPG-----FSTELCGGIHVENIGHIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + LK A LK ++ +VE++ +E ++ Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKARE 737 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K ++ ++ +IADV + +L+ ++D ++ K ++ I++L Sbjct: 738 ITSLKEKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S + V++ L ++ A +L +++A+ + GG GGG+P AQ+GG + +K ++A Sbjct: 798 STFE--KLSFAVGVSKALTGKYKAGNLVKIAAE-ITGGKGGGKPDFAQAGGKDKSKIEEA 854 Query: 889 IAGVASFLKK 898 + + +++ Sbjct: 855 MEAIKKAIEE 864 >gi|222100169|ref|YP_002534737.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359] gi|221572559|gb|ACM23371.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359] Length = 864 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 354/902 (39%), Positives = 538/902 (59%), Gaps = 49/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY + Sbjct: 4 MTSEEIREAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + Sbjct: 63 ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + +L+++VY+EDEEAF++W + GL KI+R+ DNFW TGPCGP +EIF+D G Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRLGKEDNFWGPAGPTGPCGPDTEIFYDTG 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C G + R++EIWNLVF ++ Q + + LP+ +IDTG GLER ++ Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q +N+D DLF+ +I+A E++TG+ Y+ + ++ RVI DH+R+ +FLI++G+ P+NE Sbjct: 239 QGVYSNFDTDLFQPIIKAIEELTGVSYKTDEEKDISIRVIADHIRAITFLISEGVFPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRAM + LLG EP + ++ A+ +MG YPE+++ K +++E L SE+ Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMNEPFLYKVVDAVVEKMGKVYPEIVRGKDMVKEVLSSEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF KTL++G+ + D ++ ++ AF+LYDT+GLPL++ +I +G ID+ Sbjct: 359 NRFLKTLEQGMRIFDELVEK---KGKIDSQDAFRLYDTYGLPLELTLEIAKEKG-VEIDV 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ ++EQ+ ++R + + SL E + T+F GY+ L Sbjct: 415 KDFDRYMKEQQRKSREAMGKVEFAKRYEYLESLPEGF-KTEFTGYERLED---------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + I ++ +EEA VEVVF +TPFYAE GGQ+ D G Sbjct: 464 -------------EAETVLIAKENRPLEEAKEKDTVEVVFSRTPFYAEKGGQVSDVGTVE 510 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++ V + EG+ VH V +GILR + L +D + R+ NH+ATHLLH Sbjct: 511 WESGEGRVEYVFEALEGVIVHRIRVLKGILRRGQKVFLKVDRKRRKDTMRNHTATHLLHA 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + P+ LRFD TH + +++ E+K +ED VN+ I Q +PV R + Sbjct: 571 ALRKVLGEHVRQAGSLVAPERLRFDFTHYRALSAEEIKKVEDMVNEWIMQAIPVEVRYTS 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+AI SG AL KY D V + S LCGGTHV +TG+I L IVSE S Sbjct: 631 YEEAIRSGVIALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIVSEES 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RR+EA+TG + ++ + L L + ++ RVE + E+ R+L+ + Sbjct: 686 VSSGVRRVEAVTGFYTLELIRRYEDVMTRLKELLGAGENEIINRVESLREKVRELERRLS 745 Query: 776 KRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + ++ + E +S K+ D + V+SK L + D + + +SG+++L E Sbjct: 746 QGRV--SEERISEKKLNDGTKLFYGVFEGVESKHLGGIADNVLNREKSGVVVLFSRF-ED 802 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S+++ V+ DL+++++A +AR AK L GG GGGR + AQ+GG + + D+ + + Sbjct: 803 KVSLVVKVSNDLIEKYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERLDEVLNRLEE 861 Query: 895 FL 896 FL Sbjct: 862 FL 863 >gi|225389081|ref|ZP_03758805.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme DSM 15981] gi|225044859|gb|EEG55105.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme DSM 15981] Length = 887 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 337/907 (37%), Positives = 511/907 (56%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK+ AI+ W+ LT+ LD Sbjct: 74 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKDDAIRWTWEFLTEVVGLDPD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF++W + G+ A++I + DNFW +GPCGPCSE+++D+GE Sbjct: 130 RLYPSVYLEDDEAFRIWNEKIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 188 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + +RYIE+WN VF QF+ K L +IDTGMGLER+A V+Q Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGKGHYTELEHKNIDTGMGLERLAVVVQGVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ ++ +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 249 SLFTVDTNKALLDRVCELAHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R LG M L + YPEL K +I + L E+++F Sbjct: 309 VLRRLLRRAARHGRKLGIEGQFMAGLAATVIELSKDGYPELEDNKAMIFKVLEQEEDKFN 368 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L+ ++ + + L G AFKLYDT+G PLD+ ++IL +G G+D Sbjct: 369 KTIDQGLSILNDRIADMQAKGENTLAGADAFKLYDTYGFPLDLTREILEEKGY-GVDEDG 427 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F A++EQ+ +AR + + + T+F+GY+ L Sbjct: 428 FAAAMKEQKDKARNARKTTNYMGADVTVYQSIDPAITTEFVGYNNL-------------- 473 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + + EIVE GQ+ V+ +QTPFY GGQ GD G G Sbjct: 474 ---------TAESKITVLTTEDEIVEALTDGQRGTVITEQTPFYGTMGGQQGDVGVITGQ 524 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D G H ++ G+L+ ++ L++ +NR NHSATHLL AL Sbjct: 525 NGEFKVEDTIHLQGGKVGHVGVMTHGMLQNGNTVTLSVCARNRALTCQNHSATHLLQKAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q+GS + LRFD TH +T EL +E+ VN I LPV T++M + Sbjct: 585 RLVLGEHVKQSGSYVDAGRLRFDFTHFSAMTPEELGKVEELVNQEIRAGLPVETQVMTLD 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV + G S+ LCGGTHV++TG I I+SE+ I Sbjct: 645 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVANTGSIASFKILSETGIA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + H +++L A K + + ++E + EE + L + K Sbjct: 700 AGVRRIEALTSEGLMKHYEEVEKELHEAAKTAKTTPAGLSAKIEGLLEEIKALSAENEKL 759 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + L ++ V ++ +++VD L+ + D L+ K+ G++++ + Sbjct: 760 KSKLAKDSLGDVMNQVKEVNGVKVLASQVADVDMNGLRGLGDQLKDKLGEGVVLIASVM- 818 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ T+ + +A +L + A ++GGGG GGRP MAQ+GG N ++A+ Sbjct: 819 DGKVNLMATATDGAQKKGAHAGNLIKAIAGLVGGGG-GGRPGMAQAGGKNPAGVEEALKK 877 Query: 892 VASFLKK 898 +++ Sbjct: 878 AVEVVEE 884 >gi|306820448|ref|ZP_07454084.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551523|gb|EFM39478.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 880 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 332/908 (36%), Positives = 528/908 (58%), Gaps = 47/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FL+FF+ H + S SL+P ND +L+ N+GM P KN F G E P + + Sbjct: 4 MKANDIRKSFLDFFESKEHYVKNSFSLVPKNDKSLLLINAGMAPLKNYFLGIETPPAKRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR G D++N+G+T RH TFFEMLGNFSFG YFK A AW+ +TK +D Sbjct: 64 ATCQKCVRTG----DIENIGKTARHATFFEMLGNFSFGDYFKNEATAFAWEFVTKVLKMD 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFDQG 180 + +L++TVY+ED+EA ++W+ G++ D+I+++ DNFW + GPCGPCSEI+ D+G Sbjct: 120 EEKLWVTVYEEDDEALEIWRDKVGVNPDRIVKLGKEDNFWEIGNGQGPCGPCSEIYIDRG 179 Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G + +R++E WNLVF QF++Q L +IDTGMGLERMA ++Q Sbjct: 180 EEFGCGHKDCKPGCDCDRFLEFWNLVFTQFDKQVDGSYKKLEHPNIDTGMGLERMACIMQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 + +DID K++ +++G KY+ + V+ R+I DH+R+ +F+++DGI+P+NEG Sbjct: 240 GVDSIFDIDTMKNIRDKVCEISGKKYQQDEKTDVSIRIITDHIRAITFMVSDGIVPSNEG 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR+ RRAM +A+LLG + + L + Y EL Q + I + L+ E+E Sbjct: 300 RGYVLRRLARRAMRHAKLLGIEQKFIETLANVVIDVYQDGYEELGQNRDYINKVLKIEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +FG+T++ G+ +L+ ++ + +NG AFKLYDT+G PL++ +I + + +D Sbjct: 360 KFGETIETGMNILNQYIADSQKANNSKINGQDAFKLYDTYGFPLELTLEIAEEKNCS-VD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I F +E QR RAR + SL T+FIGY+ L Sbjct: 419 IEEFENQMEMQRQRARNARAKGSDIGWKDEISSLDLSVKNTEFIGYEKLED--------- 469 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +++ IV G++ ++A GQ++ ++FD+TPFYAE+GGQ+GDTG Sbjct: 470 --------------KAVIADIVIDGKLSDKAAQGQEIILIFDKTPFYAESGGQVGDTGLI 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +Q+ +V K G+F+HH + +G L+ + L +D +NR NH+ATHLLH Sbjct: 516 KNATVEIQVNNVTKSTNGLFLHHCKLNKGELKKGDKVELLVDVKNRFATMRNHTATHLLH 575 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG H+ Q GS ++PD LRFD H ++ EL +E VN+ I + V T++M Sbjct: 576 KALKVVLGDHIQQAGSLVSPDRLRFDFNHFAQVSKEELMKVEQLVNEQIYNAIDVQTQVM 635 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + EDA +GA +L KY + VRV+S+ G S CGGTHV ++ EI + IVSE Sbjct: 636 DIEDAKKTGAMSLFDEKYGETVRVLSI-----GEFSKEFCGGTHVKNSNEIGMFKIVSEG 690 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEAITG + ++ + E +++++S LK SQ N++ R ++ E + LQ Sbjct: 691 GVASGVRRIEAITGYSVYNFIVEKQELIENVSSTLKTSQDNLLKRASDLMAENKNLQKKI 750 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + D+ S KI DVN + +++ L+ + K+++ +++ Sbjct: 751 KEVQSAGAKTDIDSVIKSAKKINDVNLVISSFEDMEDDILRDFAQNIIDKVENSVVVFSN 810 Query: 830 ISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ E K + L +V ++L+ ++NA + + A ++ GG GGG+P+MA +GG + +K +A Sbjct: 811 VNTENQKLTFLCMVAKNLIPKYNAGKIVKEVA-MVTGGNGGGKPNMAMAGGKDVSKIQEA 869 Query: 889 IAGVASFL 896 ++ L Sbjct: 870 LSKAEEVL 877 >gi|328554359|gb|AEB24851.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens TA208] gi|328912763|gb|AEB64359.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens LL3] Length = 878 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 340/915 (37%), Positives = 518/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D L +TV+ EDEEA+ LW + G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A+E+++G Y + +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIEAAERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G + P M L+P + M + YPE+ + + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ ++ I++G FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLNEGLAILSDVIKKEKENGSGIISGKDVFKLYDTYGFPVELTEEY-AED 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D F +E+QR RAR +GS + +L++ + F+GY + Sbjct: 413 EQMKVDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSATK---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V ++ G+++ EA G V+++ D+TPFYAE+GGQ+ Sbjct: 467 -------------------AEAKVIELLHDGQLISEAHEGDTVQILLDETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + I DV+K G VH V+ G ++ S+ ++ Q R + NH+ Sbjct: 508 GDRGVLRSAQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWASIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VAIDLKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK + +V R++ + E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKTNVKDVPKRIQSLQAELK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + Q + +L + I V ++ ++ D L++++D L+ K+ S Sbjct: 743 EAQRENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+++ +A + + +A+V GGGG GGRP MAQ+GG Sbjct: 803 VIILGAVQND-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+ ++K Sbjct: 861 EKLEEALTSAEDWIK 875 >gi|261418428|ref|YP_003252110.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|319767612|ref|YP_004133113.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52] gi|261374885|gb|ACX77628.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|317112478|gb|ADU94970.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52] Length = 878 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 354/915 (38%), Positives = 518/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ+ N++ DLF +I+A+EQ+ G +Y + + V +VI DH+R+ +F I DG Sbjct: 234 MCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL GL +L V+ + +++ G+ AF+LYDT+G P+++ ++ Sbjct: 354 IRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RARA + S + L + ++F+GYD L Sbjct: 414 GMT-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +S V AIV+ G +VEE +G++ +++ D TPFYAE+GGQ+ Sbjct: 466 ------------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK G +H IVE G ++ +D R ++ NH+ Sbjct: 508 ADQGVFESETGTAVVKDVQKAPNGQHLHAIIVEYGTVKKGSRYTARVDEAKRMRIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I ++LP Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELK 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L+ + +L + + V ++ + D +L+++ D L++K+ + Sbjct: 743 ELERENESLASRLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + K ++ VT+DL+ + F+A L + A GGGG GGRP +AQ+GG + Sbjct: 803 VIVLASA-QGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGG-GGRPDLAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 +K +A+ V +++K Sbjct: 861 SKVGEALGYVETWVK 875 >gi|260583982|ref|ZP_05851730.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633] gi|260158608|gb|EEW93676.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633] Length = 881 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 349/920 (37%), Positives = 507/920 (55%), Gaps = 62/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+ K F G E P Sbjct: 1 MKKLSSSEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEV 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHT FEM+GNFS G YFKE I AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD RLY+T Y +D E LW + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WLALDPNRLYVTYYPKDPETKYLWMEKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF QF LP ++DTGMGLE Sbjct: 174 YDRGEKYQTLAEDDPENYPGGENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +IQ EQ++ KY + V+ +VI DH+R+ SF I D Sbjct: 234 RVVSVIQDTPTNFETDLFMPIIQQLEQLSAGKKYNTSKDLDVSFKVIADHIRAVSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGY++RR++RR++ + + LG + L+P + + M S YPE+ + I+ Sbjct: 294 GALPSNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVASIMHSYYPEVTENMEFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + +E+ RF +T+ GL +L+ V + + +L+G+ AFKLYDT+G P ++ + Sbjct: 354 KVIANEENRFQETIHDGLAILETVFAEMKEQNQTVLSGENAFKLYDTYGFPYELTLEYAS 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G +D F ++ Q+ RARA S + L++ + F+GYD Sbjct: 414 DNGYE-VDEEGFQAEMKAQKERARAARNTETSMNVQSAV--LRDITVESTFVGYDRT--- 467 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ AIV + E+VE A+ +V+VVF+QTPFYAE GG Sbjct: 468 --------------------TEKGLLSAIVYEDELVESALEDTRVQVVFNQTPFYAEMGG 507 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + ++ T VQ KKA H I ++ + VL +D Q R +L Sbjct: 508 QLSDHGVIKDESGQVVATVVQVKKAPNGQPLHTIDVIAPMQLNSTYVLEVDQQERAKLIK 567 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H +Q GS + P LRFD +H +T+ EL +E VN+ I Sbjct: 568 NHTATHLLHQALKEVLGTHANQAGSLVAPGYLRFDFSHFGQVTAEELAEMERIVNEKIWA 627 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L VVT E+A GA AL G KY ++VR+V++ S LCGG HVS+T EI Sbjct: 628 ALDVVTVETTLEEAKKLGAMALFGEKYGNKVRMVNIAN-----WSIELCGGVHVSNTQEI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 L I+SES I AG+RRIEA+T Q A L + LK +AS +K V + RV + Sbjct: 683 GLFKILSESGIGAGVRRIEAVTSQEAFELLAKHELLLKQIASDVKSVQLDSTPERVSHLQ 742 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E ++ Q + K +L ++ S + +F++ + D EL+ + D ++K Sbjct: 743 QELKEAQHEISALKAKLMKSEVADLFESVSTAGNYSFITVHLPNKDMNELRQLADTWRQK 802 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S + ++ ++ +KA++L V++D ++ A D+ + A + GG GGGRP MAQ+G Sbjct: 803 AASDVFVVA-TNEGEKANLLAAVSKDANEKGIKAGDIIKSIASHIQGG-GGGRPDMAQAG 860 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ V FL + Sbjct: 861 GKNPAGIPAALKAVEEFLTQ 880 >gi|297529280|ref|YP_003670555.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3] gi|297252532|gb|ADI25978.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3] Length = 878 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 355/915 (38%), Positives = 519/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ+ N++ DLF +I+A+EQ+ G +Y + + V +VI DH+R+ +F I DG Sbjct: 234 MCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL GL +L V+ + +++ G+ AF+LYDT+G P+++ ++ Sbjct: 354 IRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RARA + S + L + ++F+GYD L Sbjct: 414 GMT-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +S V AIV+ G +VEE +G++ +++ D TPFYAE+GGQ+ Sbjct: 466 ------------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK G +H IVERG ++ +D R ++ NH+ Sbjct: 508 ADQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKRMRIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I ++LP Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELK 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L+ + +L + + V ++ + D +L+++ D L++K+ + Sbjct: 743 ELERENESLAARLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + K ++ VT+DL+ + F+A L + A GGGG GGRP +AQ+GG + Sbjct: 803 VIVLASA-QGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGG-GGRPDLAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 +K +A+ V +++K Sbjct: 861 SKVGEALGYVETWVK 875 >gi|237744281|ref|ZP_04574762.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1] gi|229431510|gb|EEO41722.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1] Length = 867 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 335/909 (36%), Positives = 510/909 (56%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLKNIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 EA G K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDDFIGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLKVDIVRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSE Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA TG A + + LK + LK + N++ +VE+ E + + Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIERKLKATNSNLIEKVEKTLETLKDTEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I + + +++L++++D ++ + + II+L Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGTKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K A Sbjct: 798 SIQ--DKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVRDIIE 863 >gi|254931439|ref|ZP_05264798.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262] gi|293582990|gb|EFF95022.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262] Length = 879 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 514/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ++G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEQV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +VEE +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|89895167|ref|YP_518654.1| hypothetical protein DSY2421 [Desulfitobacterium hafniense Y51] gi|122482444|sp|Q24UT2|SYA_DESHY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89334615|dbj|BAE84210.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 875 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 344/908 (37%), Positives = 522/908 (57%), Gaps = 48/908 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R FL FF GH +LPS+SLIP +DPTL+ T +GMVPFK F + +P + Sbjct: 1 MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR DL+ VG+T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 61 ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L+ITV+ EDEEA LW + +G+S ++I +N W+ GPCG CSEI+ D G Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIKY--DPENLWAAGPVGPCGYCSEIYVDLG 174 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +R++EIWNLVFMQ+ + LPK +IDTGMGLER+A+V+Q Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDEAGLLTPLPKQNIDTGMGLERIASVMQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF +I +++G+ Y N V +V+ DH R+ SF+++DGI P +EG Sbjct: 235 GAASNFDTDLFLPIINKVAELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ YARLLG +P + + + + YPEL + + I LR E++ Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQKDYSHHYPELKENENFILNHLRLEEK 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL++G +L + L + + +L+G AF LY+T+G P+++ +++L +G++ +D Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + +FN A EE R A+ S + + + G T F+GY L Sbjct: 414 METFNAAAEEHRRLAKEQSQQMKAVQESAAISEKAKALGTTPFLGYHEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V+A+ + GE V++A G +V + ++PFYAE+GGQ+ D+G Sbjct: 463 ------------AAHTKVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGVI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ +V+K G H ++ +G+L T + +D R + +HSATHLL Sbjct: 511 RSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLLQ 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS +TPD LRFD TH +TSAEL+ +ED +N+ + N+PV M Sbjct: 571 AALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNEAVLANMPVAAEEM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A ASGA AL G KY D VRVVS+ G +S LCGGTH+ +TG+I L+ I+SE Sbjct: 631 SLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIRATGDIGLVKIISEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+ G A ++ ++++ A LK +++ R++ + + + L+ Sbjct: 686 GIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLEKEV 745 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + ++ ++ + V ++ +S D L++ D L+ K++ G+++L G Sbjct: 746 QQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGVLVL-G 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + E K + + VVT L +A + + AK+ GGGG GGRP MAQ+GG + K +A+ Sbjct: 805 AAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKITGGGG-GGRPDMAQAGGKDAAKLGEAL 863 Query: 890 AGVASFLK 897 V + +K Sbjct: 864 DQVPAIIK 871 >gi|319651658|ref|ZP_08005785.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] gi|317396725|gb|EFV77436.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 350/915 (38%), Positives = 531/915 (58%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLSGAEIRRMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIIWAWEFLTDKN 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +L +T++ ED+EAFK+W++ G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFEDEKLSVTIHPEDDEAFKIWREKVGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGPEYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V+Q N+D DLF +I+ +E+++G KY V +VI DH+R+ +F + DG Sbjct: 234 MASVVQNVPTNFDTDLFMPIIRGTEEISGKKYGASKETDVAFKVIADHIRTVAFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + EP M L+P + M YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQININEPFMYDLVPVVGEIMHDFYPEVKEKTEFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL GL +L V+ + + G F+LYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLHEGLAILSSVIKKEKEKGSVTIQGADVFRLYDTYGFPVELTEEYAEEE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RAR+ + S + L E ++F+GYD L+ + Sbjct: 414 GMK-VDHAGFEKEMEGQRERARSARQDVDSMQVQGGV--LGELKIESEFVGYDKLQTA-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V AIV+ G++++EA +G++V+++ ++TPFYAE+GGQ+ Sbjct: 469 ---------------------AKVAAIVKDGQLIDEAHAGEEVQLILNETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +G+++ I DVQK G +H A++E G L+ E S++ ++D Q R ++ NH+ Sbjct: 508 ADQGTLKAEGLKVSIKDVQKAPNGQNLHRAVIEEGTLKAEASVLASVDEQIRSKVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LGSHV+Q GS + PD LRFD +H ITS EL+ IE VN+ I +L Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVGPDRLRFDFSHFGQITSEELEKIEAIVNEQIWVSLD 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + ++A A GA AL G KY VRVV V G +S LCGG HV +T I L Sbjct: 628 VDINFKDIDEAKAMGAMALFGEKYGKIVRVVQV-----GDYSLELCGGCHVPNTSSIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AG RRIEA+TG+ A L Q LK + LK + ++ R++ + E + Sbjct: 683 KIQSESGIGAGTRRIEAVTGEAAYKLLNDQIHVLKEASGKLKTNPKDLSSRIDVLLGEMK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + +I + ++ + D L+++ D L++K+ S Sbjct: 743 QLQRENESLAAKLGNIEAGSLVSKAKEINGITVLAEKVQASDMNNLRNMADDLKQKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L + E K +++ VT+DL+ + F+A + A GGGG GGRP MAQ+GG + Sbjct: 803 VVVLGSV-NEGKVNIIAGVTDDLIKKGFHAGKAVKEVAAKCGGGG-GGRPDMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 K + A+ V ++K Sbjct: 861 EKLESALQFVEEWVK 875 >gi|317471795|ref|ZP_07931133.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] gi|316900721|gb|EFV22697.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] Length = 879 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 353/910 (38%), Positives = 521/910 (57%), Gaps = 50/910 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + V+ +R FL+FF+ H ++ S SL+P ND +L+ N+GM P K FTGQE P Sbjct: 1 MKSYGVNELRKMFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V T QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ Sbjct: 61 TRVATCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY +D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D Sbjct: 117 GLDPERLYPSVYLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P E +RY+E+WN VF QFE L +IDTGMGLER+A V Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +QE + +D+D K + ++ G+ Y + N ++ RVI DH+RS+SF+I+DG++P+N Sbjct: 236 VQEVDSIFDVDTIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + R+LG E + L + E YPEL + + I + L +E Sbjct: 296 EGRGYVLRRLIRRAARHGRMLGMKELFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F +T+D+GL +L + + ++ L G AFKLYDT+G PLD+ ++IL +G Sbjct: 356 EEQFNRTIDQGLQILADMEEAMSREGKKELAGKDAFKLYDTYGFPLDLTKEILEEKG-IS 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E+QR +AR + + + ++F+GYD L Sbjct: 415 VDETGFQKAMEQQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + A+ + + V GQ+ ++ +TPFYA +GGQ D G Sbjct: 466 --------------TCESEIIAMTTDKNLTDSLVEGQRGTIICSRTPFYATSGGQEADQG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + DV K + G F H V G L ++L ++ +NRRQ NHSATHL Sbjct: 512 VILSENSSFAVEDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS LRFD TH P+TS E+K +ED VN+ IA N PV T+ Sbjct: 572 LQKALRTVLGSHVEQAGSSNNAKHLRFDFTHFSPMTSEEIKKVEDIVNEEIAANRPVETK 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ ++A +GA AL G KY D VRVVS+ G S LCGGTHV++TG I + I+S Sbjct: 632 LMSMDEAKNTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITVFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEAIT + + +E+L A +K + ++ R+E + E ++L Sbjct: 687 ETGVAAGVRRIEAITDKAVFEYYEKMEEELMEAAKVVKSTPAKLMARLEALMTELKELHS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + L + V ++ +++VD L+ + D+L++K+ G+I+L Sbjct: 747 ENESLKSKLAKDALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVL 806 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 S K ++ + T+ +A +L + A +GGGG GGRP+MAQ+GG D Sbjct: 807 AS-SLGGKVFLVAMATDGAQKAGAHAGNLIKGIAGCVGGGG-GGRPNMAQAGGKKPEGID 864 Query: 887 QAIAGVASFL 896 AIA L Sbjct: 865 DAIAKAKEEL 874 >gi|313637763|gb|EFS03118.1| alanyl-tRNA synthetase [Listeria seeligeri FSL S4-171] Length = 879 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 349/916 (38%), Positives = 516/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W++ GL+ + I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ++G+KY E N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTAFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + I+Q +V+E +G +++F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYIIQNDALVDEVAAGXXAQLIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H +V+ G+L T ++ L++D RR+ NH+ Sbjct: 508 ADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVDKVKRRETVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK S ++E + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTSTKETPQKIELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I VN ++ ++ D +L+ +D + K G Sbjct: 743 EVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + E K +++ V+ED + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGSALDYVSTWVKE 876 >gi|138896126|ref|YP_001126579.1| alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2] gi|134267639|gb|ABO67834.1| Alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2] Length = 892 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 359/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 15 MKKLTSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDN 74 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 75 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 130 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +TV+ EDEEA+ +W+ GL ++IIR+ FW + E GP GP +EIF Sbjct: 131 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRLEGK--FWDIGE-GPSGPNTEIF 187 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 188 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 247 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ+ N++ DLF +I+A+EQ+ G +Y + N V +VI DH+R+ +F + DG Sbjct: 248 MCSILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGA 307 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I Sbjct: 308 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARV 367 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL GL +L V+ K ++ G+ AF+LYDT+G PL++ ++ Sbjct: 368 IRTEEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEA 427 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G++ +D F + +E QR RARA + S + L + ++F+GYD L Sbjct: 428 GMS-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 479 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 VSS V AI++ G+ VEE +G++ +++ D TPFYAE+GGQ+ Sbjct: 480 ------------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQI 521 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G+ + DVQK G +H +VERG ++ +D R Q+ NH+ Sbjct: 522 ADQGVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHT 581 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +++P Sbjct: 582 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIP 641 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 642 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLF 696 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E R Sbjct: 697 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELR 756 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + ++ V ++ + D +L+++ D L++K+ + Sbjct: 757 QLQRENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+ + ++A L + A GGGG GGRP MAQ+GG + Sbjct: 817 VIVLAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKDA 874 Query: 883 NKADQAIAGVASFLK 897 NK +A+ V +++K Sbjct: 875 NKVGEALDYVETWVK 889 >gi|157965032|ref|YP_001499856.1| alanyl-tRNA synthetase [Rickettsia massiliae MTU5] gi|157844808|gb|ABV85309.1| Alanyl-tRNA synthetase [Rickettsia massiliae MTU5] Length = 883 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 406/901 (45%), Positives = 559/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 10 TTEEVRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 70 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 129 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 130 DKLYATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 189 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ Sbjct: 190 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 249 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNY+IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 250 NNYNIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 309 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 310 RRIMRRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKAT 369 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL +D F + Sbjct: 370 LERGLKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILK-TRDISVDHKGFEEQ 428 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 429 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 469 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 470 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 525 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 526 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 585 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T M EDA+ Sbjct: 586 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAV 645 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LC GTHV TG+I I SES+I AG+ Sbjct: 646 KQGAMALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGV 700 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + +D LKS+ S LK ++ ++ +V I E ++++ K Sbjct: 701 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLA 760 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 761 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 819 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 820 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 879 Query: 896 L 896 L Sbjct: 880 L 880 >gi|47093426|ref|ZP_00231191.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|226224105|ref|YP_002758212.1| alanyl-tRNA synthetase [Listeria monocytogenes Clip81459] gi|254824437|ref|ZP_05229438.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|254852128|ref|ZP_05241476.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|300764830|ref|ZP_07074820.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017] gi|47018205|gb|EAL08973.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|225876567|emb|CAS05276.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605431|gb|EEW18039.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|293593673|gb|EFG01434.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|300514506|gb|EFK41563.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017] gi|328465542|gb|EGF36771.1| alanyl-tRNA synthetase [Listeria monocytogenes 1816] Length = 879 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +VEE +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|256844995|ref|ZP_05550453.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] gi|256718554|gb|EEU32109.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] Length = 867 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 330/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDKNSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISY 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 N E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I+SE Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDMVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + L + LK + N+V +VE+ E ++ + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I V + + +++L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L D+ A DL + A+ + GG GGGR AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVRGIIE 863 >gi|296333167|ref|ZP_06875620.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675327|ref|YP_003866999.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149365|gb|EFG90261.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413571|gb|ADM38690.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] Length = 878 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 343/915 (37%), Positives = 517/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 DQ L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDQELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A+E ++G Y +N +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATETISGEIYGTDNVKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMYDLVPVVAEIMADFYPEVKEKSDFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L ++ +++G FKLYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F + + +QR RAR +GS + +L++ + F+GY + Sbjct: 414 NMT-VDHKGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTKAD-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V ++Q G+ ++EA G+ V+++ D+TPFYAE+GGQ+ Sbjct: 469 ---------------------ANVIVLLQDGQFIDEAHEGESVQIILDETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ Sbjct: 508 GDKGYLRSEQAIVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSSVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V +S LCGG HV +T EI L Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQVGG-----YSLELCGGCHVRNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TGQ A + Q LK A LK + V RV + E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQAADELKTNIKEVPKRVAALQAELK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + Q + +L + ++ V ++ ++ D L++++D L+ K+ S Sbjct: 743 EAQRENDTLLAKLGNVEAGAILSKVKEVDGVRVLAEKVNAKDMNHLRTMVDELKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+++ +A L + +A+V GGGG GGRP MAQ+GG Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+A V ++K Sbjct: 861 EKLEEALASVEDWVK 875 >gi|205830251|sp|A8F323|SYA_RICM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 878 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 406/901 (45%), Positives = 559/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNY+IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYNIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKAT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL +D F + Sbjct: 365 LERGLKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILK-TRDISVDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T M EDA+ Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAV 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LC GTHV TG+I I SES+I AG+ Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + +D LKS+ S LK ++ ++ +V I E ++++ K Sbjct: 696 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|205830105|sp|A4IR80|SYA_GEOTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 878 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 359/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +TV+ EDEEA+ +W+ GL ++IIR+ FW + E GP GP +EIF Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRLEGK--FWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ+ N++ DLF +I+A+EQ+ G +Y + N V +VI DH+R+ +F + DG Sbjct: 234 MCSILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL GL +L V+ K ++ G+ AF+LYDT+G PL++ ++ Sbjct: 354 IRTEEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G++ +D F + +E QR RARA + S + L + ++F+GYD L Sbjct: 414 GMS-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 VSS V AI++ G+ VEE +G++ +++ D TPFYAE+GGQ+ Sbjct: 466 ------------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G+ + DVQK G +H +VERG ++ +D R Q+ NH+ Sbjct: 508 ADQGVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E R Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELR 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + ++ V ++ + D +L+++ D L++K+ + Sbjct: 743 QLQRENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+DL+ + ++A L + A GGGG GGRP MAQ+GG + Sbjct: 803 VIVLAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKDA 860 Query: 883 NKADQAIAGVASFLK 897 NK +A+ V +++K Sbjct: 861 NKVGEALDYVETWVK 875 >gi|34763053|ref|ZP_00144027.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887279|gb|EAA24376.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 867 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 330/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISY 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 N E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I+SE Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDMVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + L + LK + N+V +VE+ E ++ + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I V + + +++L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L D+ A DL + A+ + GG GGGR AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVRGIIE 863 >gi|308174440|ref|YP_003921145.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|307607304|emb|CBI43675.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] Length = 878 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 342/915 (37%), Positives = 522/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D L +TV+ EDEEA+ LW + G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ N+D DLF +I+A+E+++G Y + +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQDVPTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G + P M L+P + M + YPE+ + + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ + I++G FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEY-AED 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D F +E+QR RAR +GS + +L++ + F+GY ++ Sbjct: 413 EQMKVDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAVK---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V ++ G+++ EA G V+++ D+TPFYAE+GGQ+ Sbjct: 467 -------------------AEAKVIELLHDGQLISEAQEGDTVQILLDKTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + + I DV+K G VH V+ G ++ S+ ++ Q R + NH+ Sbjct: 508 GDRGVLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VAIDLKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK + +V R++ + E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + Q + +L + I V ++ ++ D L++++D L+ K+ S Sbjct: 743 EAQRENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + E K ++ VT+DL+++ +A + + +A+V GGGG GGRP MAQ+GG Sbjct: 803 VIILGAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+A ++K Sbjct: 861 EKLEEALASAEDWIK 875 >gi|15613830|ref|NP_242133.1| alanyl-tRNA synthetase [Bacillus halodurans C-125] gi|20139935|sp|Q9KDE6|SYA_BACHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|10173883|dbj|BAB04986.1| alanyl-tRNA synthetase [Bacillus halodurans C-125] Length = 879 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 525/916 (57%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH++ PS+SL+P +DP+L++ NSG+ K F G+ P Sbjct: 1 MKYLTSAQVRQMFLDFFKEKGHDVEPSASLVPHDDPSLLWINSGVATLKKYFDGRVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ +L +TV+ ED+EA+ WK+ G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDKEKLSVTVHPEDDEAYSYWKEKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPEYGDQPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N++ DLF +I+A+E+++G +Y ++ V+ +VI DH+R+ +F I DG Sbjct: 234 MVSVIQNVPTNFETDLFMPIIRATEKISGTEYGSHHEADVSFKVIADHIRTVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGDIMVDFYPEVKEKAAFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L+ V+ + ++G F+LYDT+G P+D+ ++ + + Sbjct: 354 VKTEEERFHETLNEGLSILEKVIDKAKSEGASTISGSDVFRLYDTYGFPVDLTEEYVEEQ 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ F +E QR RAR GS + L + + FIGY L Sbjct: 414 GL-QVDLDGFEAEMERQRERARTARQQAGSMQVQDEV--LGQITVDSTFIGYKQL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + ++ IV + + +GQ+ +V+ +TPFYAE+GGQ+ Sbjct: 466 ------------------STETTIETIVLDKTVADYVGAGQEAKVILKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G ++DVQK G +H IV+ G L+ + ++ R + NH+ Sbjct: 508 ADKGIIRGANGFAVVSDVQKAPNGQHLHTVIVKEGTLQVNDQVQAIVEETERSGIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS ++ + LRFD +H +T E + IE VN+ I Q + Sbjct: 568 ATHLLHRALKDVLGEHVNQAGSLVSEERLRFDFSHFGQVTDEEKEKIERIVNEKIWQAIK 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V ++A A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VNISTKTLDEAKAIGAMALFGEKYGDIVRVVEV-----GDYSIELCGGCHVTNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IVSES I AG+RRIEA+TG+ A + Q + LK A+ +K +V RVE + ++ Sbjct: 683 KIVSESGIGAGVRRIEAVTGKEAFLFMAKQLDLLKETAATVKAKNVKDVPVRVEALQQQI 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 R+LQ + +L + KI V ++ IS D L+S++D L+++I S Sbjct: 743 RELQRENESLNAKLGNMEAGSLVNEVQKIEGVPVLAKAISGADMDGLRSIVDKLKQEIPS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +I+L G + E K +++ VT+DL+++ ++A L + A GGGG GGRP MAQ+GG Sbjct: 803 VVIVL-GTASEGKVNIVAGVTKDLINKGYHAGKLVKEVATRCGGGG-GGRPDMAQAGGKQ 860 Query: 882 GNKADQAIAGVASFLK 897 K A++ V ++K Sbjct: 861 PEKLQDALSFVYEYVK 876 >gi|256027953|ref|ZP_05441787.1| alanyl-tRNA synthetase [Fusobacterium sp. D11] gi|289765898|ref|ZP_06525276.1| alanyl-tRNA synthetase [Fusobacterium sp. D11] gi|289717453|gb|EFD81465.1| alanyl-tRNA synthetase [Fusobacterium sp. D11] Length = 867 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 335/909 (36%), Positives = 509/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + +R E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVRIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 EA G K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DVQ K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IHSDDFIGKVLDVQ-KQKDIFIHTVEFEKGIAEENKTYKLEVDTVRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGVEVNISH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSE Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPGF-----STELCGGTHIDNIGKIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA TG A + + LK + LK + N++ +VE+ E + + Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I + + +++L++++D ++ + + II+L Sbjct: 738 LETLKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854 Query: 889 IAGVASFLK 897 + ++ Sbjct: 855 FKEIREIIE 863 >gi|303229350|ref|ZP_07316140.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] gi|302515886|gb|EFL57838.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] Length = 872 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 338/910 (37%), Positives = 499/910 (54%), Gaps = 55/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQH 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+KY N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ A++EQR RAR + + LK++ Sbjct: 413 EGFDAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ +S V + + E ++ AV G ++ V+ TPF+AE GGQLGDTG + Sbjct: 449 ----ELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 565 ALKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SES Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A ++ +A LK V R+ ++ E ++ Sbjct: 680 IGSGVRRIEAITGRAALDAAKHDRLTIERIAGELKTKPAQVEERLHQVLVEAKETAKELD 739 Query: 776 KRKLQLN---VEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +++ D+ K I DV F++ + EL+ D K+ SG++++ Sbjct: 740 QIRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++D++ A ++ + +A+ + GG GGGRP MAQ+GG K A Sbjct: 800 AMGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMDA 858 Query: 889 IAGVASFLKK 898 + +K+ Sbjct: 859 LKAAGEAVKE 868 >gi|218437893|ref|YP_002376222.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424] gi|218170621|gb|ACK69354.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424] Length = 881 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 342/906 (37%), Positives = 514/906 (56%), Gaps = 50/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL+FF KN H++LPS+SL+P DPT++ T +GM+PFK IF GQ+KP Y T Sbjct: 9 SGSEIRSYFLDFFAKNQHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQKPDYPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFKLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++ ++V++ED+EAF++W+ + +I R+ DNFW TGPCGPCSE+++D Sbjct: 124 DQIVVSVFEEDDEAFEIWRDKINIPPQRIKRMGKKDNFWQAGPTGPCGPCSELYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ Q + L +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GDKTIDLEDDSRFIEFYNLVFMQYNQDAEGNLTPLQNKNIDTGMGLERMAQILQKVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQA+ + ++Y+ + + +VI DH+R+ +IADGI +N GRGY Sbjct: 243 NYETDLIFPIIQAAADIAKIEYKKADEKTKVSLKVIGDHVRAVVHMIADGITASNTGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + +AYP + Q + I+ L E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGIEGAFINQVAEVAIALSETAYPNVRQRETPIKGELDREEAAFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+RG LL +++ + K + ++G AFKLYDT+G PL++ Q+I GL +++ Sbjct: 363 TTLERGEKLLSEIIAKVKKSKKKQISGVDAFKLYDTYGFPLELTQEIAEEEGLT-VNVEE 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F++ +++Q+ +++A + T + L E T+F+GY + Sbjct: 422 FDEEMKKQQDQSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDAQSV----------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + V+ ++ G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G G+ Sbjct: 470 ------------AHVEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYLTGE 517 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + +++ DV +K FVH VERG + S+ TID RR++ +H+ATHLL AL Sbjct: 518 TLVVRVEDV-QKESAFFVHFGRVERGTITVGDSVTATIDRACRRRVQAHHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+ VSQ GS +T D LRFD +P+T EL+ IED +N+ IA+ IM E Sbjct: 577 KKIVDDSVSQAGSLVTFDRLRFDFNCPRPVTPEELQQIEDLINNWIAEAHEAHVSIMALE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY VRV+ V S LCGGTHV +T EI L I+SES + Sbjct: 637 EAKAKGAVAMFGEKYGAEVRVLDVPG-----VSMELCGGTHVRNTAEIGLFKIMSESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+ G +L ++ +K L KV + R+ + E + Q Sbjct: 692 AGIRRIEAVAGPAVLEYLNEREAVVKDLCDRFKVKPHEISDRITALQSELKSTQKQMESL 751 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L + + + D + I VD L + + LQ+K+ ++L I Sbjct: 752 QQELAIAKSDQLLSNAESVGDFKVLVAEIEGVDPNGLMTAAERLQQKLGESAVILGSIPS 811 Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K +A+ Sbjct: 812 EGKVSLVAAFSPKVIKEKKLQAGKFIGEIAKICGGGG-GGRPNLAQAGGRDSSKLKEALE 870 Query: 891 GVASFL 896 L Sbjct: 871 SAKKQL 876 >gi|313608702|gb|EFR84533.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL F2-208] Length = 879 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKSLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +VEE +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRVSVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVEGD-KVNLISAVSEEAIKSGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|297544523|ref|YP_003676825.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842298|gb|ADH60814.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 877 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 356/909 (39%), Positives = 535/909 (58%), Gaps = 55/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + +TT Sbjct: 7 NEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+R D++ VG+T RH TFFEMLGNFS G YFK+ AI AW+ +T+ L R Sbjct: 67 QRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVDR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++++Y+ED+EAF++W KI GL +++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181 Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R+IE WNLVF QF + + LP +IDTGMGLERMAT++Q + Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVDS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D+ + + ++ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGYV Sbjct: 242 IFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I+ ++ E+ERF + Sbjct: 302 LRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFKE 361 Query: 361 TLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +L ++ L +L G AFKLYDT+G PLD+ ++IL G +D + Sbjct: 362 TIDQGLTILQDYINELKLQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEVG-IVVDEEGY 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + LE+QR RAR+ S + I+ +L + T+F+GY Sbjct: 421 TKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGYT----------------- 461 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 T G +S V AIV++ E+VEEA +G V ++ D TPFYAE+GGQ+GD G + Sbjct: 462 ------TYGSNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLENEN 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +++ D +K + FVH +ERG++ + ID +R + NH+ATHLLH AL Sbjct: 516 VLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKALK 574 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V ++ Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTYDE 634 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA AL KY D+VRVV + +S LCGGTHV +T EI L +VSES++ A Sbjct: 635 ALKEGAVALFTEKYGDKVRVVRI-----DDYSVELCGGTHVKNTNEIGLFKVVSESAVGA 689 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A +L ++E LK + LK +V ++E + + + + K Sbjct: 690 GLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQLK 749 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +++ S + + + I + DS+ LK++ D L+ K+++ +++L + E Sbjct: 750 IKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASSTLE 809 Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK----ADQA 888 KA + + T+D++ N + + + K + G GGGRP +AQ G N +K D+A Sbjct: 810 -KAIFVGMATKDVVQKGINMGAVIKEACK-VSEGNGGGRPDIAQGTGKNPSKVKEALDKA 867 Query: 889 IAGVASFLK 897 I V LK Sbjct: 868 IEVVKEQLK 876 >gi|253583470|ref|ZP_04860668.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725] gi|251834042|gb|EES62605.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725] Length = 866 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 338/909 (37%), Positives = 518/909 (56%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF+ H+ S+SLIP +D TL+ T +GMVPFK F GQ++ Y Sbjct: 1 MLTGNQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L+++V+ D+EA ++W + ++++R+ ++N+W+ TG CGPCSEI D G Sbjct: 116 DKDKLWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A ++ Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K+NN++ DL LI+ + ++T +Y + + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKSNNFETDLLFPLIEEAAKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + RLLG++E + ++ + + M +AYP+L I++ ++ E+ Sbjct: 296 GRGYVLRRILRRAVRHGRLLGHSELFLYKMVDKVVSMMENAYPDLRSNVEHIKKVVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F +TLD+G+ L++ + L I L+G+V FKLYDT+G P ++ ++I +G I Sbjct: 356 EKFSRTLDQGMQLVNQEIEKLKAANITKLDGEVTFKLYDTYGFPYELTEEICQEKG-IEI 414 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + EQ+ +ARA + + ++YGAT+F GY L+ + + R Sbjct: 415 SKEEFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDRYGATEFSGYTTLKDTGKLLSSR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 G+ K ++FD TPFY E+GGQ D G Sbjct: 475 ------------------------DGK-------DNKKLMIFDVTPFYGESGGQAADIGM 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+G ++ DVQ K +GIF+H V +G L ID NR + NH+ATHLL Sbjct: 504 ITGNGFEGKVIDVQ-KQKGIFIHTVEVLKGTPIEGEEYFLEIDEANRMATAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + + LRFD H + +T+ EL+ +E+ VN+ IA+ + V Sbjct: 563 HEALREVLGSHVQQAGSFVNGERLRFDFNHYEAMTAEELEKVEELVNEKIAEAIDVKIAN 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A +GA AL G KY D VRVVSVE S LCGGTH+ + G+I L I SE Sbjct: 623 MSMDEAKKAGATALFGDKYGDVVRVVSVEGF-----SIELCGGTHIDNIGKIGLFKIESE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + I AGIRRIEA+TG+ A + + LK++ +K + N++ RVE++ E ++ Sbjct: 678 AGIAAGIRRIEAVTGKGAYKVVKDTEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKE 737 Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K ++ + I V + + +L+ ++D ++ K+ + +++L Sbjct: 738 LEELKSRFTQIEAQALAENSEIINGVTVIMKTFKTRTADDLRKMIDYVKDKMTNTVVVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + KA VT++L + A +L + +A V+ GG GGGRP AQ+GG + K +A Sbjct: 798 SST--DKAIFAAGVTKELTSKVKAGNLVKEAA-VITGGNGGGRPDFAQAGGKDVTKIQEA 854 Query: 889 IAGVASFLK 897 + V LK Sbjct: 855 MDSVKETLK 863 >gi|219669584|ref|YP_002460019.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] gi|219539844|gb|ACL21583.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] Length = 875 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 345/908 (37%), Positives = 521/908 (57%), Gaps = 48/908 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R FL FF GH +LPS+SLIP +DPTL+ T +GMVPFK F + +P + Sbjct: 1 MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR DL+ VG+T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 61 ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L+ITV+ EDEEA LW + +G+S ++I +N W+ GPCG CSEI+ D G Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIKY--DPENLWAAGPVGPCGYCSEIYVDLG 174 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +R++EIWNLVFMQ+ + LPK +IDTGMGLER+A+V+Q Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDESGLLTPLPKQNIDTGMGLERIASVMQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF +I +++G+ Y N V +V+ DH R+ SF+++DGI P +EG Sbjct: 235 GAASNFDTDLFLPIINKVSELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ YARLLG +P + + + + YPEL + + I LR E++ Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQRDYSHHYPELKENENFILNHLRLEEK 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL++G +L + L + + +L+G AF LY+T+G P+++ +++L +G++ +D Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + +FN A EE R A+ S + + + G T F+GY L Sbjct: 414 METFNAAAEEHRRLAKEQSQQMKAVQESAAISEKAKALGTTPFLGYHEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V+A+ + GE V++A G +V + ++PFYAE+GGQ+ D+G Sbjct: 463 ------------AAHTRVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGLI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ +V+K G H ++ +G+L T + +D R + +HSATHLL Sbjct: 511 RSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLLQ 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS +TPD LRFD TH +TSAEL+ +ED +N + N+PV M Sbjct: 571 SALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNKAVLANMPVAAEEM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A ASGA AL G KY D VRVVS+ G +S LCGGTH+ +TG+I L+ I+SES Sbjct: 631 SLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIHATGDIGLVKIISES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+ G A ++ ++++ A LK +++ R++ + + + L+ Sbjct: 686 GIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLEKEV 745 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + ++ ++ + V ++ +S D L++ D L+ K++ G+++L G Sbjct: 746 QQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGVLVL-G 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + E K + + VVT L +A + + AK+ GGGG GGRP MAQ+GG + K +A+ Sbjct: 805 AAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKITGGGG-GGRPDMAQAGGKDAAKLGEAL 863 Query: 890 AGVASFLK 897 V +K Sbjct: 864 DQVPGIIK 871 >gi|259046499|ref|ZP_05736900.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175] gi|259036664|gb|EEW37919.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175] Length = 914 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 345/920 (37%), Positives = 499/920 (54%), Gaps = 62/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+ K F G E P Sbjct: 35 MKKLSSSEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEV 94 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHT FEM+GNFS G YFKE I AW+ LT K Sbjct: 95 PRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEK 150 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD RLY+T Y +D E LW GL D II + DNFW + GPCGP +EIF Sbjct: 151 WLGLDPDRLYVTYYPKDPETKALWMDKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIF 207 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF QF LP ++DTGMGLE Sbjct: 208 YDRGEKYNNLAEDDPENYPGGENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLE 267 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ E ++ KY + V+ +VI DH+R+ SF I D Sbjct: 268 RVVSVIQDTPTNFETDLFMPIIKQLESLSAGKKYNDSKELDVSFKVIADHIRAVSFAIGD 327 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGY++RR++RR++ + + LG + L+P + M S YPE+ + I+ Sbjct: 328 GALPSNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVAQIMHSYYPEVTENMEFIQ 387 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + +E+ RF +T+ GL +L+ + + + L+G+ AFKLYDT+G P ++ + Sbjct: 388 KVIANEENRFQETIHDGLSILETIFADMKASNETTLSGENAFKLYDTYGFPYELTLEYAS 447 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G +D F ++ Q+ RARA S + L++ ++F+GY Sbjct: 448 DNGFT-VDEEGFQAEMQAQKDRARAARNTETSMNVQSAV--LRDITVESEFVGY------ 498 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + ++KAIV E+VE A ++VFD+TPFYAE GG Sbjct: 499 -----------------ASTTEEGVLKAIVVDDELVESAHKDAHAQLVFDRTPFYAEMGG 541 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + +Q KKA H + G L+ + L +D R ++ Sbjct: 542 QLADHGTIQDANGTVVANVLQVKKAPNGQPLHTVEVIGDLQVNAAYTLVVDASERAKIIK 601 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H +Q GS +TP GLRFD +H +TS EL +E VN+ I Sbjct: 602 NHTATHLLHQALKDVLGTHANQAGSLVTPTGLRFDFSHFGQVTSEELAEMERIVNEKIWA 661 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L VVT EDA + GA AL G KY + VR+V++ G S LCGG HV++T EI Sbjct: 662 GLEVVTVETTLEDAKSRGAMALFGEKYGNLVRMVNI-----GDWSIELCGGIHVANTQEI 716 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 L IVSES I AG+RRIEA+T + A L + LK +A +K VV RV + Sbjct: 717 GLFKIVSESGIGAGVRRIEAVTSKEAFDLLSHHENLLKQVAGEVKAIQLDTVVERVATLG 776 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E ++ AK K ++ +++ ++ +F++ + + EL+ + D ++K Sbjct: 777 QELKEANGEIAKLKAKIMKSEVADVFNNVEEVNGTSFITVALENKEMDELRQLADTWRQK 836 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I ++ S + KA++L+ V++D R A D+ + A + GG GGGRP MAQ+G Sbjct: 837 GASDIFVVGTASAD-KANLLVAVSKDANARGLKAGDIIKAIAPAIQGG-GGGRPDMAQAG 894 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N QA + +L K Sbjct: 895 GKNPAGIPQAFELLKEYLAK 914 >gi|294792102|ref|ZP_06757250.1| alanine--tRNA ligase [Veillonella sp. 6_1_27] gi|294457332|gb|EFG25694.1| alanine--tRNA ligase [Veillonella sp. 6_1_27] Length = 871 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 338/909 (37%), Positives = 500/909 (55%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+KY N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR RAR + +K D Sbjct: 413 EGFEAAMKEQRERAREARVK----------------------------EAAKVATPDITF 444 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + ++ +S V + + E ++ A G ++ V+ TPF+AE GGQLGDTG + Sbjct: 445 LKDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A ++ +AS LK + R+ ++ E ++ Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEDRLHQVLAEAKETAKELE 739 Query: 776 KRKLQLN---VEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +++ D+ K I DV F++ + EL+ + D K+ SG++++ Sbjct: 740 QIRKEVSAAGAADIVAGKVVIGDVEFVAAAVKASSIDELRDLADLGLDKLNGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++D++ + A ++ + +A+ + GG GGGRP MAQ+GG K +A Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858 Query: 889 IAGVASFLK 897 + LK Sbjct: 859 LKAGGEALK 867 >gi|291087654|ref|ZP_06347045.2| alanine--tRNA ligase [Clostridium sp. M62/1] gi|291074356|gb|EFE11720.1| alanine--tRNA ligase [Clostridium sp. M62/1] Length = 868 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 341/901 (37%), Positives = 514/901 (57%), Gaps = 48/901 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R Sbjct: 1 MFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +V Sbjct: 61 TG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSV 116 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 Y +D+EAF +W K G+ A++I R DNFW GPCGPCSEI++D+GE G PG Sbjct: 117 YQDDDEAFDIWNKEMGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPG 175 Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 + +RYIE+WN VF QF+ L +IDTGMGLER+A ++Q+ + + ID Sbjct: 176 CTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVIVQDVDSLFTID 235 Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 K L+ + G +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGYVLRR++ Sbjct: 236 TNKALLDRVCALAGKEYQKDHETDVSLRIVTDHIKSCTFMISDGIMPSNEGRGYVLRRLL 295 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA + R LG + L + YPEL + K +I + L E+++F KT+D+G Sbjct: 296 RRAARHGRKLGIEGKFLAELSRTVIELSKDGYPELDEKKAMIFKVLTEEEDKFNKTIDQG 355 Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L+ + S + K +++L+G+ AFKLYDT+G P+D+ ++IL R L+ +D F ++ Sbjct: 356 LSILNEMESEMAKKGEKVLSGENAFKLYDTYGFPVDLTKEILEERDLS-VDEEGFAACMK 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 +Q+ ARA + + + T+F+GYD L Sbjct: 415 KQKDAARAARKTTNYMGADVTVYQSIDPAVTTEFVGYDRLVH------------------ 456 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + + + E+VE GQ ++ +TPFYA GGQ D G + ++ Sbjct: 457 -----ESEITVLTTEDELVEALTDGQNGTIIVKETPFYATMGGQQADIGVISTENGTFEV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D K G H V +G+ + + LT++ +NR + NHSATHLLH AL T+LG+ Sbjct: 512 KDTIKLQGGKVGHVGTVTKGMFKVGDQVTLTVNKENRELTARNHSATHLLHKALRTVLGT 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS +T D LRFD TH +T E+ ++E VND IA +LPVVT IM+ E+A +G Sbjct: 572 HVEQAGSLVTKDRLRFDFTHFSAMTPDEIAAVEKMVNDEIAASLPVVTDIMSLEEAKKTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY + VRVV + G S+ LCGGTHV +T I IVSE+ I AG+RRI Sbjct: 632 AMALFGEKYGESVRVVRM-----GDFSTELCGGTHVPNTSTISAFKIVSEAGIAAGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+T + +++L A +K + + +++ + +E + L + K K +L Sbjct: 687 EALTSTGLMDYYHEMEQELHEAAKLVKSTPAALHDKLQAMLDELKALHSENEKLKSRLAN 746 Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L +I V ++ + VD L+++ D L++K+ G++++ + ++ K ++ Sbjct: 747 DSLGDVLNQVKEINGVKLLAVRVDGVDMNGLRNLGDQLKEKLGEGMVVIASV-QDGKVNL 805 Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + TE + +A +L + A ++GGGG GGRP+MAQ+GG N + A+ + Sbjct: 806 MASATEGAQKKGAHAGNLIKAIASLVGGGG-GGRPNMAQAGGKNPAGVEDALRKAEEVIA 864 Query: 898 K 898 + Sbjct: 865 E 865 >gi|315303256|ref|ZP_07873900.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596] gi|313628368|gb|EFR96857.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596] Length = 879 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 345/916 (37%), Positives = 512/916 (55%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W+ GL+ + I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWRDKIGLTDEHIVEID--DNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ++G+KY E N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLR-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEYV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + I+ +V+E +G + +++F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYIIHNDVLVDEVAAGSEAQLIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +V+ G+L T ++ L++D RR+ NH+ Sbjct: 508 ADKGTIQSETGLAHVEDVQKAPNKQNXXXVVVKEGVLTTGDTVKLSVDKVKRRETVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEKIVNEKIWEQIA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + ++E + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKAAYHFVTEQENILKHAANLLKTTTKETPQKIELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I VN ++ ++ D +L+ +D + K G Sbjct: 743 EVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+ED + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGSALDYVSTWVKE 876 >gi|312143796|ref|YP_003995242.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904447|gb|ADQ14888.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus'] Length = 877 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 351/910 (38%), Positives = 524/910 (57%), Gaps = 50/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +L+FF+ H +L S+ L+P NDP+L++ N+GM PFK F G +P + + Sbjct: 3 KTGDEIRQAYLDFFESKDHLVLDSAPLVPKNDPSLLWINAGMAPFKAYFDGSLEPPHPRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI AW+ +T+ + + Sbjct: 63 ATSQKCIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEKAIIWAWEFVTEVLEFE 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+IT+Y +D+EA +W+K GL ++I+R+ +NFW + TGPCGPCSEI +D+G Sbjct: 119 EDRLWITIYKDDDEAHDIWQKKVGLPEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGI 177 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 EG+R++EIWNLVF Q+ E LP +IDTGMGLER+A++LQ Sbjct: 178 EFGDSSEDVLGGEGDRFLEIWNLVFTQYNYTEAGEYKELPNKNIDTGMGLERVASILQNT 237 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL K +I TG+ Y+ ++ +RVI DH+RS + I+DG LP+NEGRG Sbjct: 238 KTNFETDLIKPIIDEVVAKTGIAYQKDDESQTAYRVIADHIRSVAVAISDGALPSNEGRG 297 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV+RR++RRA Y R +G+TEP + L+ + P+L Q +E ++SE+E F Sbjct: 298 YVIRRLIRRAARYGRKIGFTEPFLYELVKTTAEVVKGVAPDLKQQLAHVENVIKSEEESF 357 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KTL++GL +L+ L L E+L+G AF LYDT+G PLD+ +DI G+ +D Sbjct: 358 LKTLEQGLNILEDFLVDLKAENKEVLSGKNAFILYDTYGFPLDLTKDIASEAGIM-VDEE 416 Query: 417 SFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR SG +K++ S K + A +F GY L Sbjct: 417 GFEAEMAAQRKRAREAREETSFSSGEIDKLYASFKAEVEAVEFTGYHSL----------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V IV++ + ++ G++ +V +TPFYAE+GGQLGD G Sbjct: 466 ------------TEESEVVGIVRENQKLQSIKKGEEANLVLHKTPFYAESGGQLGDKGII 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ + +A+ + VH VE+G L+ S+ + R+ + +HSATHLLH Sbjct: 514 KNENFEAKVLNTFARAK-LPVHKVKVEKGELKRGDSVKAVVYDDRRKATARHHSATHLLH 572 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L +LG HV+Q+GS + P+ LRFD TH ++ EL IE +N + +N PV T Sbjct: 573 KTLKEVLGEHVNQSGSLVAPEKLRFDFTHFSALSDQELNEIEKRINKAVMENYPVETEEK 632 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A A GA AL G KY++ VRVV + G +S LCGGTHV +TG+I I+SES Sbjct: 633 ALEEAKAMGAEALFGEKYDEEVRVVKM-----GDYSLELCGGTHVDATGDIGPFKIISES 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+ G+ A + + + L A+ LK V R++++ +E ++LQ Sbjct: 688 GIAAGVRRIEAVVGEFALDYFNEKVDILNQAAAELKTEPDQVADRIKDLQKEKKELQKEL 747 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L +A +N ++ +SE+D++ L++++D L+ K+ S +I+L Sbjct: 748 QSLKQKLAGSKKDELLDKLKNVAGINVLTAELSELDNQGLRNLIDQLKDKLDSAVIVLAS 807 Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + VT DL++ F+A + A+V GGGG GGRP MAQ+GG +K A Sbjct: 808 -KGQNKVVFVASVTADLIEQGFHAGKIISEVAQVAGGGG-GGRPDMAQAGGSKVDKTAAA 865 Query: 889 IAGVASFLKK 898 +A V +KK Sbjct: 866 LAKVEEIIKK 875 >gi|217964349|ref|YP_002350027.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|217333619|gb|ACK39413.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|307571085|emb|CAR84264.1| alaS [Listeria monocytogenes L99] Length = 879 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +VEE +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNIHRVSVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|188586395|ref|YP_001917940.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|205830160|sp|B2A5J7|SYA_NATTJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|179351082|gb|ACB85352.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 878 Score = 807 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 335/910 (36%), Positives = 517/910 (56%), Gaps = 52/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FLEFF+ H + S S+IP NDP+++ +GM P K FTG++ P + Sbjct: 1 MRTHEIRKKFLEFFETKDHYVRKSYSIIPENDPSILLIGAGMAPLKPYFTGEKTPPSPRM 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR D++ VG T RH TFFEMLGNFSFG YFK AI ++ T+ L Sbjct: 61 ATSQKCVRT----PDIEEVGITARHATFFEMLGNFSFGDYFKREAIFWGYEFCTEWLSLS 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ +VY +D+EA+ +W G+ ++I+R+ DNFW + TGPCGPCSEI +D+G Sbjct: 117 PEKLWASVYLDDDEAYDIWHDEVGIPHERIVRLGKEDNFWEIG-TGPCGPCSEIHYDRGA 175 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + + L + +IDTG GLER+A +LQ+ Sbjct: 176 EYGCDSPDCKPGCDCDRYLEIWNLVFTQFNRDEEGNYTTLKQKNIDTGAGLERLAVLLQD 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGR 297 + Y+ID+ K ++ Q++G+ Y +N + R+I +HLRS +F++ DG+LPANEGR Sbjct: 236 VPSIYEIDIIKPILDHVIQLSGVNYGEDNDKDISLRIITEHLRSVTFIVGDGVLPANEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA + +LLG + M + + M AYPEL + + I++ + E++R Sbjct: 296 GYVLRRILRRASRHGKLLGIKDTFMSDGVDLVIDIMKEAYPELEERREYIKKIVEIEEDR 355 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L+ L ++ K L G AFKLYDT+G PL++ ++I+ G +D Sbjct: 356 FNKTVDQGLGILNEFLENMNKQGKNTLEGSDAFKLYDTYGFPLELTREIVQENGYT-LDE 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + L QR +AR TE + +F GYD L Sbjct: 415 QGFQEELNRQREQARKAQQESEGMLTESNAMKQFQDQ-KVEFTGYDNLEQ---------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + I+ + ++++E G++V+++ + TPFY E+GGQ+GDTG Sbjct: 464 -------------ESQIIGIIDHKNDDLLKEVQEGEEVQILINPTPFYGESGGQIGDTGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D R + + V V G LRT + +DYQ R+ + NHSATH+L Sbjct: 511 IFSDNGRAHVKNSSVNGYDQTVLQVKVTDGQLRTGDKVSGKVDYQRRKDIMKNHSATHML 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H+AL ++G+HV Q GS + PD LRFD TH P++ E+K IE VN +I +N V Sbjct: 571 HYALKKVVGAHVEQAGSLVAPDRLRFDFTHFAPLSEDEIKQIELEVNKLIRENSRVRVIN 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA AL KY VRV+ + + LCGGTH ++TGE+ L I ++ Sbjct: 631 TDLEEAKELGAVALFEDKYEQEVRVIEIGP------AVELCGGTHATATGELGLFKIDNQ 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +S+ AG+RR+EA+TGQ A +L + E+++ +A LK + VV + +E E+++ Sbjct: 685 TSVGAGVRRLEALTGQHALEYLDQKAEQIQDIAELLKTEENKVVEKTQEFLEDFKAKDKE 744 Query: 774 HAKRKLQL---NVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K Q+ V+DL I+D +++ +++ D+ L+ + + ++ K+ SG+++L Sbjct: 745 IEKLKNQIFTFKVDDLLAQSKDISDFKLVANQLNDFDADSLRDLSERVKNKLDSGVVVL- 803 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G S KA + +VT+DL+++ +A ++ + AK+ GGGG GGRP MAQ+GG +K ++ Sbjct: 804 GSSTNNKALFVAMVTKDLVEKGVHAGNIVKEVAKITGGGG-GGRPDMAQAGGKEPDKLNE 862 Query: 888 AIAGVASFLK 897 AI V + ++ Sbjct: 863 AIMKVETLVR 872 >gi|294785718|ref|ZP_06751006.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27] gi|294487432|gb|EFG34794.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27] Length = 867 Score = 807 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 329/909 (36%), Positives = 508/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IE+ VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISY 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 N E+A GA L G KY D+VRVV V S+ LCGGTH+ + G+I L I+SE Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + L + LK + N+V +VE+ E ++ + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I V + + +++L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L+D+ A DL + A+ + GG GGGR AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLIDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVRGIIE 863 >gi|238916897|ref|YP_002930414.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750] gi|238872257|gb|ACR71967.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750] Length = 880 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 341/908 (37%), Positives = 515/908 (56%), Gaps = 48/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +L+FF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRRLYLDFFESKGHLKMKSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTETVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y +D+EAF +W K G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYQDDDEAFNIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D + L ++ G+KY+ + V+ RVI DH+RS +F+++DGI+P+NEGRGY Sbjct: 241 SIFDVDTLQALRNKVCEMAGVKYKEDEKQDVSIRVITDHIRSVTFMVSDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + + I + + E+++F Sbjct: 301 VLRRLLRRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELEEKRTFITKVISEEEDKFN 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L+ + + L + +L+G AFKLYDT+G P+D+ ++IL + + ID Sbjct: 361 KTIDQGLSILNDMEAELASKGENVLSGADAFKLYDTYGFPMDLTKEILEEKNIT-IDEAG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN A+EEQR +AR + + + + F+GYD L Sbjct: 420 FNAAMEEQRVKARNARKVTNYMGADATVYDEIDPAITSAFVGYDKLTN------------ 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + + E+V+ G K V+ D+T FYA GGQ GD G Sbjct: 468 -----------ESEITVLTTEEEVVDALSEGDKGTVIVDETVFYATMGGQEGDKGVIKTS 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + K G H + +G+++ + + + R NHSATHLL AL Sbjct: 517 EGEFAVETTIKLKGGKIGHVGTMTKGMMKVGDTATMEVSPAYRADTCKNHSATHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + PD LRFD TH + +T E+ +ED VN+ IA+ +PVVT +M E Sbjct: 577 RIVLGDHVEQKGSYVDPDRLRFDFTHFQSMTKEEIAKVEDIVNEKIAEAIPVVTDVMTIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY ++VRVV++ G S CGGTHV++T I L IVSE+ + Sbjct: 637 EAKKTGAMALFGEKYGEKVRVVAM-----GDFSKEFCGGTHVANTANIRLFKIVSEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + ++ ++ A K +V ++ + +E + L + K Sbjct: 692 AGVRRIEALTDKGVIKYYAELEKTIEEAAKAAKAEPVQLVKKIAAMNDEIKSLMSENEKL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L L ++ V +++ + VD EL+++ D L+ +I SG++++V Sbjct: 752 KAELANNALGDTAGDIKEVNGVKYIATKVDGVDMNELRNLGDKLKGEIGSGVVVIVSAQG 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K SV+ + T+D++ + +A +L + A ++GGGG GGRP+MAQ+GG N D+ IA Sbjct: 812 ADKVSVIAMATDDVIAKGAHAGNLIKALAPIVGGGG-GGRPNMAQAGGKNPAGIDELIAK 870 Query: 892 VAS-FLKK 898 V L++ Sbjct: 871 VPDTILEQ 878 >gi|154686881|ref|YP_001422042.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42] gi|205829982|sp|A7Z735|SYA_BACA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|154352732|gb|ABS74811.1| AlaS [Bacillus amyloliquefaciens FZB42] Length = 878 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 343/915 (37%), Positives = 524/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D L +TV+ EDEEA+ LW + G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ + N+D DLF +I+A+E+++G Y + +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQDVSTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ LG + P M L+P + M + YPE+ + + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTLGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ + I++G FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEY-AED 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D F +E+QR RAR +GS + +L++ + F+GY ++ Sbjct: 413 EQMTVDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAVK---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V ++ G+++ EA G V+++ D+TPFYAE+GGQ+ Sbjct: 467 -------------------AEAKVIELLHDGQLISEAHEGDTVQILLDKTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + + I DV+K G VH V+ G ++ S+ ++ Q R + NH+ Sbjct: 508 GDRGVLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VAIDLKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ A LK + +V R++ + E + Sbjct: 683 KIVSESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + Q + +L + I V ++ ++ D L++++D L+ K+ S Sbjct: 743 EAQRENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + E K ++ VT+DL+++ +A + + +A+V GGGG GGRP MAQ+GG + Sbjct: 803 VIILGAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGG-GGRPDMAQAGGKHP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+A ++K Sbjct: 861 EKLEEALASAVDWIK 875 >gi|162453400|ref|YP_001615767.1| hypothetical protein sce5124 [Sorangium cellulosum 'So ce 56'] gi|205830212|sp|A9FRF5|SYA_SORC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161163982|emb|CAN95287.1| alaS [Sorangium cellulosum 'So ce 56'] Length = 917 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 338/926 (36%), Positives = 499/926 (53%), Gaps = 52/926 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R TFLEFF + GHE++PS+ L+P NDPTLMF N+GMV FK++FTG+++ YQ Sbjct: 8 SSDLLRRTFLEFFAQRGHEIVPSAPLVPQNDPTLMFVNAGMVQFKDVFTGKDRRPYQRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R GKHNDL+NVG T RH TFFEMLGNFSFG YFKE AI AW+LLTK +D+ Sbjct: 68 SSQKCIRISGKHNDLENVGVTARHQTFFEMLGNFSFGDYFKEDAIAFAWELLTKVYDISP 127 Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL +T+Y D+EA +W+K++G D+I+R+ DNFW+M + GPCGPCSEI Sbjct: 128 SRLVVTIYNGEGGFPADDEAAAIWRKVTGFGDDRILRLGLADNFWTMGDVGPCGPCSEIH 187 Query: 177 FDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGMGLERM 233 F G+ G +G + EIWN VFMQ+E+ + LP SIDTGMGLER+ Sbjct: 188 FFHGKEPDVARFGEEPRIDGTGWTEIWNNVFMQYERAEKDGPLVPLPAPSIDTGMGLERL 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290 A+VLQ T+NYD DL + L+ + +++G Y ++ V+ RVI DH R+++FLIA+G+ Sbjct: 248 ASVLQGVTSNYDTDLLRGLVDKAAELSGKPYSGGSADDDVSMRVIADHARTAAFLIAEGV 307 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P + R YVLRR+MRRA+ + LG P + + + MG YPEL + LI Sbjct: 308 MPEKQRREYVLRRVMRRAIRHGHRLGIDRPFLHEVALEVVRRMGETYPELRDRRELIARV 367 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+ RF TL RG+ +LD + + L A LY T+G PLD+ Q I Sbjct: 368 TEDEEVRFRSTLKRGMKILDERFDEMRSSGERTLPAAAAADLYTTYGFPLDLTQVISAES 427 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467 + + A + + + K F GY+ G Sbjct: 428 NFDVDVQGA----EAIIKGAGEADGPIDPTAAVDPAHREARAKLAQPVVFTGYEHEEGDS 483 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + +V Q V+A+ VE A +G VE+V +TPFYAE+GGQ Sbjct: 484 EIVAIVRVEIQGEGDRAR-----KVRAL------VERAEAGAAVEIVVRETPFYAESGGQ 532 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G DG R+++ D QK G+ VH +V G L + L +D+ R NH Sbjct: 533 VGDVGEVTADGARVEVKDTQKPLAGLVVHEGVVHEGALAVGQRVHLAVDHAARSATRRNH 592 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATH+LH AL +LG H Q GS + PD LRFD TH++P+T E+ IED VN+ + N Sbjct: 593 SATHVLHWALRKVLGEHAQQKGSRVGPDVLRFDFTHNRPLTREEISRIEDLVNEKVLTNA 652 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T I+ ++A GA A+ KY D VR++++ LCGGTH + G+I L Sbjct: 653 KVTTEILAMDEARRRGAMAIFEEKYGDTVRMLTMTP-----EVVELCGGTHACALGDIGL 707 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I SE + AG+RRI A TG A ++ G + +L K G++ ++ +I Sbjct: 708 FKITSEGGVAAGVRRILASTGLNALAYARGVEAELARARQVAKAQGGDLAEKIGKIVAHE 767 Query: 768 RKLQLIHAKRKLQLNVEDLS---------------CHKIADVNFMSHII-SEVDSKELKS 811 R+L+ A+ + ++ I + ++ + + L+ Sbjct: 768 RELEKKVAELERRILEGAGPAQGGGGGGIDAMLDGARDIGGIKVLARRVPDGTNPGALRD 827 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 + + L+ K+ +L+G + KA + +++++ +R A +L + A+++ GG GGGR Sbjct: 828 LAEKLRDKLGDRSAVLLGAAVGDKAQLAVMLSKSATERLKAGELIKPIARIV-GGSGGGR 886 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897 P MAQ+GG + + D AIA + + ++ Sbjct: 887 PDMAQAGGTDVAQLDAAIAALYTEVE 912 >gi|290893863|ref|ZP_06556841.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] gi|290556580|gb|EFD90116.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] Length = 879 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKMLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +VEE +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|15604686|ref|NP_221204.1| alanyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E] gi|6226166|sp|Q9ZCA4|SYA_RICPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|3861381|emb|CAA15280.1| ALANYL-TRNA SYNTHETASE (alaS) [Rickettsia prowazekii] gi|292572518|gb|ADE30433.1| Alanyl-tRNA synthetase [Rickettsia prowazekii Rp22] Length = 877 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 414/890 (46%), Positives = 557/890 (62%), Gaps = 37/890 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI WDLLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T+Y D+ A WKKI+GL D+IIRI TNDNFWSM +TGPCGPCSEIFFD GE Sbjct: 125 DKLYVTIYHTDDPAASYWKKIAGLKDDRIIRIKTNDNFWSMGDTGPCGPCSEIFFDHGEE 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E +R+IEIWN+VFMQ+EQ NK+ R LPK SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDENCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K +G ++RVI DHLR+SSFLIADGI+P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKIKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRAM +A +LG EPLM LLP L MG+ YPEL A+ I L E+ RF T Sbjct: 305 RRIMRRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAESFISSILEQEEIRFKTT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL R + +D F + Sbjct: 365 LERGLKLLTEETKTLTKGSKLSGEVAFKLYDTYGFPLDLTEDILKNRDIT-VDHKGFEEL 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE+YG+T+F+GY L Sbjct: 424 MLTQKERARKSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V+ + ++ +QTPFY E+GGQ+GD G G Sbjct: 465 ----NEAECKIIALIKNNNLVDNIQEINTQFLLIANQTPFYGESGGQMGDIGMIFSQGSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + L I+ + R+ L I+HSATH+LH L I Sbjct: 521 IEVIDTFKYLRSIIVHKCILKKGKINIGENANLNINIRYRQNLRIHHSATHILHAVLHKI 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS +T LRFD+ HSK IT+ E+ IED VN+II N V T +M EDAI Sbjct: 581 LGKQVIQKGSLVTSTYLRFDINHSKAITNQEITLIEDQVNEIIRNNHEVTTTVMFTEDAI 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LC GTHV TG+I I+SES+I AG+ Sbjct: 641 KQGAIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGSFKIISESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + +D LKS+ S K ++ ++ +V I E ++L+ K Sbjct: 696 RRIEAVCGEFVIKLIRERDSLLKSIESSFKTNKNELITKVINILERNKELEKELEKAHLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + +I + + + +++K L+ + L KK+++ I++ + + K Sbjct: 756 SLDLSIEQIKKQTKEITGIKLLYKEVGNINNKILRQAAENLTKKVENLIVVYIAHGVD-K 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 S+ + V++ + D+FNA +A+ + LGG GGGG+ +AQ+GG + Sbjct: 815 LSITVAVSKAITDKFNAGIIAKELSLFLGGSGGGGQASIAQAGGNDIINL 864 >gi|116872933|ref|YP_849714.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461085|sp|A0AIV3|SYA_LISW6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116741811|emb|CAK20935.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 879 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 514/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W++ GLS + I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLSEEHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPTFGDDTSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHNQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L ++F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTAKSEFVGYNATEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + I+Q +V+E SG+ +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYIIQDDALVDEVASGKTAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHTANLLKATTKEAPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + E K +++ V+ED + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATKC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++ +K+ Sbjct: 861 AELATALDYVSTCVKE 876 >gi|257462579|ref|ZP_05626989.1| alanyl-tRNA synthetase [Fusobacterium sp. D12] gi|317060231|ref|ZP_07924716.1| alanyl-tRNA synthetase [Fusobacterium sp. D12] gi|313685907|gb|EFS22742.1| alanyl-tRNA synthetase [Fusobacterium sp. D12] Length = 866 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 320/910 (35%), Positives = 503/910 (55%), Gaps = 58/910 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF+ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI +W+ +T+ L Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEECHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + RYIEIWNLVF ++ + LPK +IDTG GLER+A ++ Sbjct: 176 PAYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K NN++ DL L++ + ++T Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKENNFETDLLFPLVEEAGRLTNSTYHENPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLG E + ++ + + AYP+L I++ ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGQKELFLYKMVKKVVEQFAVAYPDLAANMENIQKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ ++ + L+G++ FK+YDT+G P ++ ++I +G + Sbjct: 356 EKFSNTLDQGIQLVNEQIALALQAGKTKLDGEITFKMYDTYGFPYELTEEICHEKG-IAV 414 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +EEQ+ +ARA + + + +G T+F GY + + R Sbjct: 415 SQEEFLEKMEEQKEKARAARAVIMEKGQDSFIEKFYDTHGVTEFTGYHSSQEKAKLLNVR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + ++FD+TPFYAE+GGQ+GD G Sbjct: 475 T-------------------------------REDGTLLLIFDKTPFYAESGGQVGDRGM 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + ++ DV KK + IF+H G L+ L +D + R +S NH+ATHLL Sbjct: 504 IFSNAFQGKVLDV-KKQKEIFIHVVESISGELKEGEECSLEVDMKYRAAVSKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + LRFD +H + +T ++K +E+ VN+ I++ + V Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIKLVEERVNEKISEAIAVEISH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A A GA L G KY D VRVV V S+ LCGG HV + G I L IVSE Sbjct: 623 KSMEEAKACGAMMLFGDKYGDTVRVVDVPGF-----STELCGGIHVENIGHIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + E L+ A+ LK +V +VE++ +E ++ Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENMEILQKSATLLKTESSLLVEKVEKVLQEEKEKSRE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K ++ ++ ++A + +L+ ++D ++ K ++ I++L Sbjct: 738 IASLKEKIAKQEAEALYSHMLEMAGAKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S+ K S + V++ L ++ A +L ++ A+ + GG GGG+P AQ+GG + K +A Sbjct: 798 STSE--KLSFAVGVSKALTSKWKAGNLVKILAE-ITGGKGGGKPDFAQAGGKDKTKIAEA 854 Query: 889 IAGVASFLKK 898 + V +++ Sbjct: 855 MEAVKKAIQE 864 >gi|303238701|ref|ZP_07325234.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] gi|302593820|gb|EFL63535.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] Length = 879 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 332/906 (36%), Positives = 535/906 (59%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS L+P NDP+L+ NSGM P K FTG+E+P + V T Sbjct: 6 LNELRERYLKFFEGKGHLRLPSFPLVPQNDPSLLLINSGMAPLKPYFTGKEEPPRRRVAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEDLKMPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++T+Y++D+EAF++W K GL ++I+R+ DNFW TGPCGPCSEI++D+G Sbjct: 122 KLWVTIYEDDDEAFEIWNKDVGLPPERIVRMGKKDNFWEHG-TGPCGPCSEIYYDRGVER 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +R+IE WN VF QF + + LP +IDTGMGLER+A + Q+ Sbjct: 181 GCGKPDCKVGCECDRFIEFWNNVFTQFNKDEEGNYTKLPNPNIDTGMGLERLACISQDVE 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D +++++ + +KY ++ ++ RVI DH+RS++ +++DG++P+NEGRGY Sbjct: 241 NLFEVDTVRNVLEYVCKTADVKYHESDKTDISIRVITDHIRSTTMMVSDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG +P + + + E AYPEL + + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGINKPFLYDISMIVINESREAYPELEEKREYIQKVIRIEEEKFD 360 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T+D+GL++L+ + E + G +A++L+ T+G P+D+ ++I GL ID Sbjct: 361 LTIDQGLIILNKYIEETKAKNAETITGTMAYELHSTYGFPIDLTREISEENGL-AIDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + E R R L S +S +K +QF+GY Sbjct: 420 FKAKMLEHRIIGREDYLSKQSSAWSDDIYSSLDKNLKSQFVGYSE--------------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 N + V I++ E+V+ A G+ V V+ D+TPFYA +GGQ+GD G G+ Sbjct: 465 --------NVAEAKVLYIIKNDEVVQTAKEGESVTVILDKTPFYAASGGQVGDEGYIEGN 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +R++I D +K +G ++H +VE+G L T + +ID + R ++ NH+ THLL AL Sbjct: 517 DVRIRIEDCKKTDDGKYLHTGVVEKGTLETGADVKASIDIRRRTSIARNHTTTHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS + PD LRFD H +TS E+ +E VN+ I ++L V + M + Sbjct: 577 RNVLGTHVHQAGSLVEPDRLRFDFAHFSAMTSEEIAKVESEVNEKILESLIVDVKEMPID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY + VRVV + +S CGGTH+ ST + + I+SES + Sbjct: 637 EAKKLGATALFGEKYGNIVRVVKIA-----DYSMEFCGGTHLKSTSQAGFVKILSESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG+ A ++L +++ + ++S LK S + V R+E + E + Q + Sbjct: 692 AGVRRIEALTGEAALAYLHEREKLINEVSSALKSSPQDSVKRIEAMAIELKSAQKEIEQL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L + ++ V + ++D + L++ D ++ K+ SG+++L G Sbjct: 752 RSKLVSGSLDEVFSNAVEVKGVKVVKARFDQLDMEALRNTGDTIRNKMGSGVVVL-GSGY 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K S +++ T+D++ + ++ ++ + AK+ GGGG GGRP MAQ+GG + +K D+AI Sbjct: 811 EGKVSFVVMATKDVVAKGIHSGNIIKEVAKIAGGGG-GGRPDMAQAGGKDLSKIDEAIDY 869 Query: 892 VASFLK 897 ++ Sbjct: 870 SIKVIE 875 >gi|297620478|ref|YP_003708615.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] gi|297375779|gb|ADI37609.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] Length = 870 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 348/907 (38%), Positives = 522/907 (57%), Gaps = 51/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR F+ +F++NGH +PSS ++P +DPTL+F N+GM FK+IF G+ Y+ Sbjct: 1 MNTQEIRRKFINYFRENGHTHVPSSPILPHDDPTLLFINAGMNQFKDIFLGKSVRDYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW++ T F+LD Sbjct: 61 VTSQKCIRVGGKHNDLENVGHTLRHLTFFEMLGNFSFGDYFKKEAIRFAWEVSTTVFELD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R++ TV+ ED+EA+++WK+ + +KI R NFWSM +TGPCGPCSE+ +D+G Sbjct: 121 PERIWPTVFREDDEAYEIWKEY--VPEEKITRFDEKQNFWSMGDTGPCGPCSELLYDRGP 178 Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P E+ ERY+E WNLVFMQ+ + + LPK SIDTG GLER+ ++ + Sbjct: 179 KYGNAKTPLEDEKEERYMEFWNLVFMQYNRDEEGVMHPLPKPSIDTGSGLERVVSIKMDV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGR 297 + YD D+ + LI E+++G+ Y+G + RVI DH+R +F IADG+ P+N R Sbjct: 239 ESVYDTDVLRALITRVEEISGIGYDGADKEKAPAFRVIADHIRCLAFAIADGVQPSNVDR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLR+++RRA+ Y R+LG P + L+P L MGS YPEL Q++ I E L +E+E Sbjct: 299 GYVLRKVLRRAVRYGRMLGLDRPFLADLVPLLIELMGSDYPELKQSENRIGEILTTEEEN 358 Query: 358 FGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F +TL RG +L+ ++ + + G+ AFKL DT+G PL+ + I L +D Sbjct: 359 FIRTLRRGGNILNQIIDEAKKEHRQITGEEAFKLKDTYGFPLEEILLIALDDELE-VDTK 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + EE + R+R +E +L E + + +F+GY+ Sbjct: 418 RFIELEEEAKERSRKTRKSTQQLASE----NLFEGFASCEFLGYEETE------------ 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V AI+ V++ +GQ+ +V D+TPFYAE GGQ+GD G G Sbjct: 462 -----------AEGKVAAIIVDNAFVDQLEAGQEGMIVLDRTPFYAEKGGQVGDKGLLTG 510 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++D Q +GI H +ERG +R + L+ +D + R+ ++ +H+ATHLLH A Sbjct: 511 ENSLFHVSDCQSPYKGIIAHLGKLERGAIRLKDPLMARVDLERRQSIANHHTATHLLHWA 570 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS + PD LRFD +H K +T E++ IED VN I +N+ V + ++ Sbjct: 571 LCKVLGDHVKQAGSVVAPDRLRFDFSHHKGLTQKEIRDIEDLVNAKIRENIAVKSYELSY 630 Query: 657 EDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+AI G KY++ VRV+ + +S LCGGTHV G I L I E S Sbjct: 631 EEAIQREEIKQFFGDKYDNIVRVIDI------DYSKELCGGTHVKQLGSIGLFRIAKEGS 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG A ++ L S+A LK ++ R+ + EE ++L Sbjct: 685 IAAGVRRIEAVTGSWAEQRSREEENLLLSIADSLKTQPQKLIQRINSLLEENKELAQELK 744 Query: 776 KRK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K L+ V DL ++ + F++ ++ + S E++ + D ++SG+++L Sbjct: 745 TLKSAHLKNIVADLINKAEEVQGIRFIAQEVA-LSSDEMRQLADDAVNALESGVVVLAA- 802 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + + ++ V++D++D+ A DL + A ++GGGG GG+ H AQ+GG K QA+ Sbjct: 803 SLDGRCQLMARVSDDMIDKGIKASDLIKTLAPIIGGGG-GGKAHFAQAGGKTPEKISQAL 861 Query: 890 AGVASFL 896 + V + L Sbjct: 862 STVRTLL 868 >gi|78044932|ref|YP_359396.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] gi|123576855|sp|Q3AEN8|SYA_CARHZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|77997047|gb|ABB15946.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] Length = 874 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 345/908 (37%), Positives = 529/908 (58%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ GH++LPS+SLIP NDP+L++T +GMVPFK FTG P + V Sbjct: 1 MLAREIREKFLKFFESKGHKILPSASLIPANDPSLLWTAAGMVPFKPYFTGAAVPEVRRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+++VGRT RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ + Sbjct: 61 TTCQKCLRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFVTEHLGIS 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LYIT+Y +D+EAF +W + G+ A++I R+ + NFW + GPCGPCSEI+ D G Sbjct: 117 KDKLYITIYLDDDEAFDIWHNVVGVPAERITRLGKDTNFWEIG-VGPCGPCSEIYVDLGP 175 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + + R++EIWNLVF+QF + + L + IDTGMGLER+A+VLQ Sbjct: 176 EKGCGSPDCGVACDCGRFLEIWNLVFIQFFRDEQGNYTPLEQKGIDTGMGLERVASVLQG 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 +N+D D+F+ ++ + Q+ G+KY + V +VI DH R+ +F I DG LP+NEGR Sbjct: 236 VPSNFDTDIFREIMDYAAQILGVKYGYDEKVDVALKVIADHTRAITFAITDGALPSNEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + RLL EP + + + +MG YPEL + + ++ E+E+ Sbjct: 296 GYVIRRLLRRALRFGRLLDREEPFLHLVAAKVIEQMGDVYPELREKAEHTLKIIKLEEEK 355 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL +L ++ L ++ + G +AFKLYDT+G P+++ ++I +G +D Sbjct: 356 FRETLNQGLSMLAELMERLTQEGKKEIPGHLAFKLYDTYGFPIELTKEIAEEKGFT-VDE 414 Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F Q +EEQR RAR + T + LKE+ G F+GY+ L Sbjct: 415 EGFKQQMEEQRRRAREAREDVDYLSTRDAFLKQLKEELGEVTFVGYEKL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ + AI++ G+ VE + ++ E++ TPFY E GGQ+ D G Sbjct: 464 ------------SESTEIIAIIKNGQKVESLAAEEEGEIITRVTPFYPEGGGQVADKGEI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +GDG +L + DV+K +H V G ++ L +D R + NH+ATHLLH Sbjct: 512 LGDGFKLSVLDVEKPLSDFILHKVKVVEGSVKVGDKATLMVDETTRMSTARNHTATHLLH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS +TP+ LRFD TH + ++ +L+ IE+ VN+ I +NL V Sbjct: 572 KALKMVLGEHVNQAGSLVTPERLRFDFTHFEGVSDEDLRKIENIVNEAILRNLLVQIDYT 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A +G AL KY D VRVV + G S+ LCGGTHVSSTG I I+ ES Sbjct: 632 TLDEARKAGVIALFDEKYGDLVRVVKI-----GEFSAELCGGTHVSSTGVIGFFKILGES 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI AG+RRIEA+TG A ++ ++ L+ K + + ++ + ++ Sbjct: 687 SIGAGVRRIEALTGLGALEYVRSLEDTLQKATEPYKCTFAELPEKISNTLKTLKEKDREI 746 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ ++ S +I V +S II D + L+ D ++ + + +++L G Sbjct: 747 EALMQKIASIEVKSLLNSVREIKGVKVLSAIIDGADMEGLRKAYDVVKASLANYVVLLAG 806 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K+ K + L V ++L D+++A +L + +AK+ GGGG GGRP MAQ+GG N K +A+ Sbjct: 807 V-KDGKVNFLAGVDKNLTDKYHAGELVKEAAKIAGGGG-GGRPDMAQAGGKNPEKVKEAL 864 Query: 890 AGVASFLK 897 + ++++ Sbjct: 865 QVIDAYVQ 872 >gi|311069223|ref|YP_003974146.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942] gi|310869740|gb|ADP33215.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942] Length = 878 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 343/915 (37%), Positives = 521/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAEVRQMFLNFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +TV+ ED+EA++LW + G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDEELLSVTVHPEDDEAYELWAQKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDPADSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A+E ++ Y +++ N +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIKATETISSEAYGQDDVKNTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTININRPFMYDLVPVVAEIMVDFYPEVKEKEEFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L ++ +++G FKLYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSLISGTDVFKLYDTYGFPVELTEEY-AED 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D F + +E+QR+RAR +GS + +L++ + F+GY + Sbjct: 413 EQMKVDHKGFEEEMEKQRARARNARQDVGSMQVQG--GALRDVTVESTFVGYTNTKSD-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V ++Q GE++EEA G+ ++++ ++TPFYAE+GGQ+ Sbjct: 469 ---------------------SSVVELLQDGELIEEAHEGETIQILLNETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G ++ITDVQK G VH +VE G L+ M + ++ R + NH+ Sbjct: 508 GDKGYLRSAQAVVRITDVQKAPNGQNVHEGLVESGTLQKGMHVTAEVEDHMRSGVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEVIVNEKIWESIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V +S LCGG HV +T EI L Sbjct: 628 VSIDLKPINEAKEMGAMALFGEKYGDIVRVVQVGG-----YSLELCGGCHVKNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TGQ A + Q LK +A LK + +V RV + + + Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYLEMNSQIGLLKQVAGELKTNVKDVPKRVAALQADLK 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + Q + +L + I+ V ++ ++ D L++++D L+ K+ S Sbjct: 743 EAQRENESLLAKLGNAEAGAILSNVKDISGVKVLAEKVNAKDMNHLRTMVDELKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L + + K ++ VT+DL+D+ +A L + +A++ GGGG GGRP MAQ+GG Sbjct: 803 VVVLGAVQND-KVNISAGVTKDLIDKGLHAGKLVKQAAEMCGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K A+ V ++K Sbjct: 861 EKLQDALTSVEEWVK 875 >gi|282890190|ref|ZP_06298720.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499847|gb|EFB42136.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 876 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 357/909 (39%), Positives = 508/909 (55%), Gaps = 48/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL +F+++GH ++ SS + P +DP+L+FTN+GM FK++F G+ Y Sbjct: 1 METQRIRRQFLNYFKEHGHRVISSSPVFPHDDPSLLFTNAGMNQFKDVFLGKSARDYHRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK AIQ AWD+ T+ F D Sbjct: 61 TTSQKCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKAEAIQFAWDISTQVFGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + ++ TV+ +DEEAF+LW + + A KI R DNFWSM E GPCGPCSE+++D+G Sbjct: 121 PQHIWPTVFRDDEEAFELWTRY--VPASKITRFGEKDNFWSMGEVGPCGPCSELYYDRGS 178 Query: 182 CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P P GERY+E WNLVFMQF + LP+ SIDTG G+ER+ + Sbjct: 179 KYGPANNPSEDVTGERYLEFWNLVFMQFNRLEDGSLSPLPRPSIDTGAGIERVVGLKMGV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGR 297 + + D+ + LI +EQV Y+ NI VI DHLR +F IADG+ P+N R Sbjct: 239 DSVFGTDVLRELIAQTEQVFNKSYDPTNIQTAPAFHVIADHLRCLAFAIADGVQPSNVDR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLR+++RRA+ Y R LG P + +LP L MG Y EL+QA+ I E L E+E Sbjct: 299 GYVLRKVLRRAVRYGRSLGMDTPFLADILPRLVATMGEDYKELVQAQQRIAEILTVEEEA 358 Query: 358 FGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F +TL RG +L+ ++ ++GD AFKL DT+G PL+ ++ I L ID Sbjct: 359 FLRTLRRGGNILNQIIEGAQNTHHRISGDDAFKLKDTYGFPLEEIELIARDANL-VIDKE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F E + R+R + ++ + + AT F+GY+ L Sbjct: 418 RFELLENEAKERSRQVQKTTQQIASTNLFVDFVKTHAATTFLGYEQL------------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V +V + V + ++GQ ++ DQTPFYAE GGQ+GDTG + Sbjct: 465 ----------SARATVTGLVVDQQFVNQIIAGQDAMIILDQTPFYAEMGGQIGDTGTIVN 514 Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 Q+T+ +G+ H + G L+ S+ ++D R+++ NH+ATHLLH Sbjct: 515 HQGMSFQVTNTISPYQGVIAHVGTLTHGHLKVGDSVEASVDAPRRQKIENNHTATHLLHW 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + P LRFD +H KP+T EL IE+ VN I NLPV T + Sbjct: 575 ALHHVLGEHVKQAGSVVEPGRLRFDFSHHKPLTKQELNEIENLVNQRIRLNLPVKTYEIA 634 Query: 656 REDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A S G KY +VRVV S LCGGTH S+ G I L I E Sbjct: 635 YEEAQKSTDIKQFFGEKYGAKVRVV------DAEFSKELCGGTHTSALGNIGLFRIAKEG 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773 SI AG+RRIEA+TG+ A S ++ + SLA LK + R+E++ EE ++L Sbjct: 689 SIAAGVRRIEAVTGEDAESLSRHSEQFIDSLAELLKTQPQKLQERIEKLVEENKQLAQEM 748 Query: 774 --HAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K++ V +LS I + + + +V + EL++ ++ LQ K+ SG+I L G Sbjct: 749 KNLKKGKMEGMVTELSQQTEVIHHIPTIIAKV-DVPAAELRNFLELLQAKMGSGVIAL-G 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +++E K ++I V++DL+ + NA L + A ++ G GGG+P+MAQ+GG K +A Sbjct: 807 VTEEDKCHLIIRVSDDLVAKGINASQLIKTLAPMIE-GTGGGKPNMAQAGGKAPQKLTEA 865 Query: 889 IAGVASFLK 897 +A L+ Sbjct: 866 LAKFRELLQ 874 >gi|154483551|ref|ZP_02025999.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC 27560] gi|149735461|gb|EDM51347.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC 27560] Length = 886 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 345/911 (37%), Positives = 521/911 (57%), Gaps = 50/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ +R FL+FF+ GH ++ S SL+P ND +L+ N+GM P K FTGQE P Sbjct: 8 MKQYGLNELRKMFLDFFESKGHLVMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPR 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V T QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 68 TRVATCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVV 123 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L+ RLY +VY ED+EAF +W K G+ A++I + DNFW GPCGPCSEI++D Sbjct: 124 GLEADRLYPSVYLEDDEAFDIWNKEMGIPAERIFKFGKEDNFWEHG-AGPCGPCSEIYYD 182 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +G G PG E +RYIEIWN VF QFE L + +IDTGMGLER+ATV Sbjct: 183 RGAKYGCGKPGCTVGCECDRYIEIWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLATV 242 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +D+D K L ++ +Y+ V+ R++ DH+RS++F+I+DGI+P+N Sbjct: 243 VQDVDSIFDVDTIKALRDKVCELANKEYKKEYKWDVSIRIVTDHIRSATFMISDGIMPSN 302 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + +LLG + L + YPEL + K +I + L E Sbjct: 303 EGRGYVLRRLIRRAARHGKLLGIDGRFLSTLSETVIESSKDGYPELEEKKSMIFKVLSEE 362 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + +F KT+D GL +L + + L+G+ AFKLYDT+G PLD+ ++IL +G G Sbjct: 363 ENKFNKTIDTGLNILADMEEEMKKNNQTQLSGENAFKLYDTYGFPLDLTEEILEEKGF-G 421 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR +AR+ + + +K T+F+GYD L Sbjct: 422 VDEDGFKEAMEVQRKKARSARKKTNYMGADATVYEQLDKALTTKFVGYDKLISD------ 475 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++V A+ + E+V+ V G K +V ++TPFY GGQ+GD G Sbjct: 476 -----------------TVVTALTTEKEVVQALVDGDKGTIVTEETPFYGTMGGQVGDKG 518 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + +G ++ + G H V +G+++ + +D R S NHSATHL Sbjct: 519 IIVTNGGEFKVEETIHLLGGKIGHVGTVVKGMIQVGDKATMKVDSAFRADTSKNHSATHL 578 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LG HV Q GS + D LRFD TH + +T E++ +E+ VN+ IA L V+T+ Sbjct: 579 LQKALKTVLGEHVEQAGSYVDADRLRFDFTHFQAMTKEEIEKVENLVNEQIATGLDVITK 638 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A +GA AL G KY ++VRVVS+ G +S LCGGTHVS+T I I+S Sbjct: 639 EMSLDEAKETGAMALFGEKYGEKVRVVSM-----GDYSIELCGGTHVSNTNVISSFKIIS 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+T H + L A K +V +++ +++E ++L Sbjct: 694 ESGVAAGVRRIEALTSTGLMKHYKESENVLNQAAKLAKSEPVALVEKIQALYDEIKELSK 753 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K K +L E + ++ V ++ + V EL+++ D L++K+ G++++ Sbjct: 754 ENEKLKAKLANEAVGDVLSQVVEVKGVKLLATHVEGVGMNELRNLGDQLKEKMGGGVVVI 813 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 V ++ KA+V+++ ED + +A ++ + AK++GGGG GGRP+MAQ+GG N A Sbjct: 814 VST-QDGKANVIVMADEDAISKGAHAGNMIKEIAKLVGGGG-GGRPNMAQAGGKNPAGAK 871 Query: 887 QAIAGVASFLK 897 A+ + L+ Sbjct: 872 DAVEAAKTILE 882 >gi|194017184|ref|ZP_03055796.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061] gi|194011052|gb|EDW20622.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061] Length = 878 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 339/915 (37%), Positives = 512/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P +DPTL++ NSG+ K F G+ P Sbjct: 1 MKTLTSAQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT + Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D L +TV+ EDEEA+ LW+ G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPNLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE + E ERY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGESYGDDMNDPELYPGGENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A E ++G Y +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + M YP++ + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ ++G+ FKLYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLNEGLAILSEVIKKERDKGSTQISGEDVFKLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F +E+QR RAR +GS + +L + + F+GY+ L Sbjct: 414 NMT-VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + ++Q GEIV EA G V+++ D+TPFYAE+GGQ+ Sbjct: 466 ------------------TADAHIVELLQNGEIVTEAHEGDTVQILLDETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + I DV+K G VH +V G + + + ++ R+ + NH+ Sbjct: 508 ADKGTLKSAEVNIDIKDVKKAPNGQHVHEGVVVSGTAKKGLEVTAEVESALRKGIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LGSHV+Q GS + + LRFD +H +T EL IE VN+ I + + Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGIS 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VAIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AG RRIEA+TG+ A L Q L+ AS LK + +V R+ + + + Sbjct: 683 KIASESGIGAGTRRIEAVTGKGAYEELNDQLTILEQAASELKSNTKDVPKRIASLQADLK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++Q + +L+ + +I V ++ ++ D L++++D L+ K+ S Sbjct: 743 EVQRENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+D++++ +A L + +A++ GGGG GGRP MAQ+GG Sbjct: 803 VIVLGAV-QNGKVNISAGVTKDVIEKGLHAGKLVKQAAEICGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+A V +K Sbjct: 861 EKLEEALAIVEESVK 875 >gi|46907732|ref|YP_014121.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b F2365] gi|59798548|sp|Q71ZG6|SYA_LISMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46881001|gb|AAT04298.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. F2365] Length = 879 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +VEE +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKLEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|312110118|ref|YP_003988434.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] gi|311215219|gb|ADP73823.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] Length = 877 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 349/915 (38%), Positives = 523/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + VQK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNVQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + RL +T++ ED+EAF++W K GL ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFEPERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEEFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ N++ DLF +I+A+E+++G +Y + V +VI DH+R+ +F I DG Sbjct: 234 MCSILQGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ +A+ L P M L+P + MG YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL GL +L V+ + ++++G+ F+LYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLHEGLAILASVIEKEKERGSDVISGEDVFRLYDTYGFPVELTEEYAQEE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RARA + S + L + ++F+GYD L Sbjct: 414 GMK-VDHEGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKVESRFVGYDEL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V IV+ G + +E G++ +++ D TPFYAE+GGQ+ Sbjct: 466 ------------------HAQSKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + R + DVQK G +HH IVE+G L+ + + ID R + NH+ Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD +H + EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ +A LK S + R++ + E R Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + ++ + ++ ++ D L++++D L++K+ S Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + E K S++ +T+DL+++ ++A L + A GGGG GGR MAQ+GG + Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVAVRCGGGG-GGRADMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 K +A+ V +++K Sbjct: 861 GKVGEALQYVETWIK 875 >gi|257784262|ref|YP_003179479.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469] gi|257472769|gb|ACV50888.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469] Length = 881 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 356/907 (39%), Positives = 509/907 (56%), Gaps = 46/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ G + PSSSL+P DP+L+ N+GM FK + G + Sbjct: 7 MTTAEIREDFLSFFESKGCKRYPSSSLVPS-DPSLLLANAGMNQFKEYYQGIKTMKEIGA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QKC+R ND+DN+G +RH +FFEMLGNFSFGGY K A A + ++ + Sbjct: 66 TSCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY TV+ +D+EA ++WK + G++ D I R+ DNFW+ TGPCGPCSEI+FDQ Sbjct: 121 LPLDRLYFTVFTDDDEAIEIWKSL-GITEDHITRLGEEDNFWAAGPTGPCGPCSEIYFDQ 179 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G P ++G+RY+E WNLVF QF++Q LP +IDTGMGLER+A ++Q Sbjct: 180 GPEFEGEAP--GDDGDRYLEFWNLVFTQFDRQEDGSLPELPHRNIDTGMGLERIAAIMQH 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 + NY+ D+ + LI E+++G KY + + R++ DH R+ +F+I DGILP NEGR Sbjct: 238 EGTNYEGDIMRTLISLGEKLSGKKYHSTDEIDRSLRILADHSRAVTFMIGDGILPGNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 Y+LRR++RRA+ + RLLG M + +G+ YPEL++ LI+ L +E+ER Sbjct: 298 SYILRRLLRRAVYHGRLLGIQGTFMAEYAHEVAVLLGAEYPELVEKSALIDGILTAEEER 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 FG TLD G L L L L+G+VAF L+DT+G P+D+ ++I G +D+ + Sbjct: 358 FGATLDAGESKLTAELEQLEDGAQLSGEVAFLLHDTYGFPIDLTREIAANAGH-VVDMDA 416 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ A+ EQR RAR + G + IW +L ++ T F GYD S Sbjct: 417 FDAAMTEQRERARKSANRDAWGNAQSIWVALSDRLDETVFDGYDNNELSGV--------- 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V A+VQ G+ VE A G +VEVV D+TPFYAE GGQ+GDTG G Sbjct: 468 -------------RVVALVQDGQEVESATVGSEVEVVLDRTPFYAEMGGQVGDTGRLSGP 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+ + +TD + + G+ H +VE G L S+ TID R + NH+ATHLL AL Sbjct: 515 GLYVHVTDTKHRDGGLESHIGVVEEGTLSIGDSVTATIDAGRRELIRRNHTATHLLDAAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + PD +RFD TH + +T EL IE VN I P+VT+IM+ E Sbjct: 575 KKVLGDHVNQAGSLVAPDRMRFDFTHFEALTKDELDRIEGMVNAEIFAAKPIVTKIMSIE 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA A+GA AL G KY D VRVVS ED S LCGGTH +T ++ L I+SESS+ Sbjct: 635 DAKAAGAVALFGEKYGDVVRVVSAGTEDT-PFSRELCGGTHARNTADLGLFKIISESSVG 693 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 + RRIEA+T A ++ + +L +A+ LKV V RVE++ ++ R Sbjct: 694 SNSRRIEAVTSMGAIEYVDERLAQLDEVAAALKVRPSAVADRVEQLQQDLRAANHKLEAA 753 Query: 778 K-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ--SGIIMLVGI 830 Q+ S ++ + + + + KEL+S D ++ ++ Sbjct: 754 LTGAGSNQVAEALKSAVQLNGYSCVIAKLEGLSGKELRSAWDGIRDASDGQPVACVIASA 813 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K S+L T+ + F+A D+ + A+ + GG GGG+P MAQ+GG N D A+ Sbjct: 814 TADGKVSLLAGATDSAVAAGFSAGDIVKEIAEFV-GGRGGGKPAMAQAGGSNAAGIDAAL 872 Query: 890 AGVASFL 896 + L Sbjct: 873 DAARTKL 879 >gi|110597674|ref|ZP_01385959.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031] gi|110340794|gb|EAT59271.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031] Length = 901 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 335/923 (36%), Positives = 509/923 (55%), Gaps = 68/923 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 16 MNSREIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGTRPYNRA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+L+T + L Sbjct: 76 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELMTGVWKLP 135 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY TVY +D+E+F++WK + +S + I+R DNFW M ETGPCGPCSEI D + Sbjct: 136 ADRLYATVYQDDDESFQIWKDHTSISPEHILRFGDKDNFWEMGETGPCGPCSEIHIDLTD 195 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + R IE+WNLVF+Q+ +Q+ LP +DTGMG ER+A V+Q K+ Sbjct: 196 DASGKS-LVNVGDYRVIELWNLVFIQYNRQSDGRLEPLPNKHVDTGMGFERVAAVMQGKS 254 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+FK L ++TG++Y + + + RVI DH R+ +F ++DG +P+NEGR Sbjct: 255 SNYDTDVFKPLFDRITEITGVRYGASMDEPHDIAMRVIADHARTLTFALSDGAMPSNEGR 314 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y++ LGY EP++ L+ L MG +PEL + + + + +RSE+E Sbjct: 315 GYVLRRILRRALRYSKNLGYNEPILHQLVGTLADSMGDVFPELKKQRDTVSKIIRSEEES 374 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + V+S + + ++ G AFKLYDT+G P D+ + + GL +D Sbjct: 375 FIVTLDRGIEIFNDVVSKVRSAKGTVIKGVDAFKLYDTYGFPFDLTRLMASDEGL-QVDG 433 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++EQ++RARA + + AT F+GY+ L + + Sbjct: 434 EGFEHCMQEQKTRARADRKEKHQIEEDGSQWLWFSDQHATSFVGYEQLELPVRIIACKHA 493 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +K+ ++ D+TPFYAE+GGQ+GD G Sbjct: 494 K--------------------------------EKLLILLDKTPFYAESGGQVGDRGWIE 521 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS------------LVLTIDYQNRRQL 583 RLQ+TD K + I IL T ++ ++D+ R+ Sbjct: 522 TASYRLQVTDTVKDGDAIVHVVTAAFDKILDTAVNPADLTIDEGQLSAEASVDHHIRQDT 581 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL ILG HV Q GS + P+ LRFD +H ++ AE+ +E +VN+ I Sbjct: 582 ERNHTATHLLHGALRRILGQHVQQKGSYVNPERLRFDFSHFSKMSDAEIARVEASVNEEI 641 Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + V + +DAIA GA A G KY D VRVV V S LCGGTHV + Sbjct: 642 RRAEEVQKHADIPYDDAIAKGALAFFGDKYADLVRVVEVPG-----ISVELCGGTHVDNI 696 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761 G I L IVSESS+ +G+RRIEA+TG+ A L + +L+ + LK V R+ Sbjct: 697 GRIGLFKIVSESSVASGVRRIEALTGKSAEKLLWQEYAELQQIRQLLKAKGDEPVASRIV 756 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDAL 816 E+ + ++L+ + ++ ++ LS +++ ++ ++ D L+S AL Sbjct: 757 ELMDARKELEKELHEIRIGSLLQSLSVDLQSAPEVSGCKLLAKVVEGADGDALRSAGLAL 816 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874 ++ + +L + ++ K S+ + ++ + +A L R A+ + GG GGG+P Sbjct: 817 REAVPCAAGLLCSV-QDGKVSLAVFASDKAVKELGIDAGKLIREVAQHVQGG-GGGKPEF 874 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 A +GG N + ++A+ + +K Sbjct: 875 ATAGGKNPDGVNKALEAFTTAVK 897 >gi|228960660|ref|ZP_04122305.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799024|gb|EEM45996.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 880 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229918435|ref|YP_002887081.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b] gi|229469864|gb|ACQ71636.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b] Length = 880 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 359/911 (39%), Positives = 527/911 (57%), Gaps = 57/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L+FF+ GH + PS+SL+P DPTL++ NSG+ K F G+ P + Sbjct: 8 TGAQIRQMYLDFFKSKGHSVEPSASLVPVEDPTLLWINSGVATLKKYFDGRVIPANPRIV 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E AI W+LLT + + L Sbjct: 68 NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGEYFREEAITWGWELLTSDEWYGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +T++ +DEE+ ++W + G+ AD+II + DNFW + E GP GP +EIFFD+G Sbjct: 124 DPDRLSVTIHPDDEESKQIWMNL-GMPADRIIPL--EDNFWEIGE-GPSGPNTEIFFDRG 179 Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E ERY+EIWN+VF Q+ LP+ +IDTGMGLERMA+V Sbjct: 180 PAFGDDPTDPELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASV 239 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ+ N+D DLF +I+ +E+++G Y + V +VI DH+R+ SF I DG LP+N Sbjct: 240 LQDVPTNFDTDLFMPIIRETEKISGDVYRQDSSKDVAFKVIADHIRTVSFAIGDGALPSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA++LG P M L+ + M YP++ + K I++ +++E Sbjct: 300 EGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDVVGDIMVDFYPQVNEKKDFIKKVIKNE 359 Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL+ GL +L+ V I++G AF+LYDT+G PL++ + Sbjct: 360 EERFHETLNDGLAILNEVAKAQKAAGSNIISGQDAFRLYDTYGFPLELTIEY-AEDHQMT 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+ EQR RAR + S + L + + F+GY+ L Sbjct: 419 VDEDGFKEAMNEQRERARQARADVESMQIQSGV--LADITMPSTFLGYNNLE-------- 468 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ + +++ GE+ + +G++ +V+ DQTPFYAE+GGQ+GD G Sbjct: 469 ---------------TNAKIISLIHNGELADVVAAGEEAQVILDQTPFYAESGGQIGDKG 513 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+ L++ DV K G +H VE G+ + E+++ ++D +R+ + NH+ATHL Sbjct: 514 QIVGEDFLLRVKDVSKAPNGQNLHTVTVESGVAKAEVAVTASVDQASRQAIVKNHTATHL 573 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS +TPD LRFD +H +TS EL+SIE VN+ I ++ V Sbjct: 574 LHRALKDTLGEHVNQAGSLVTPDRLRFDFSHFGQVTSEELQSIERQVNEKIWASIGVDIE 633 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 MN DA A GA AL G KY D VRVVS G +S LCGG HVS+T EI L I+S Sbjct: 634 EMNIADAKAKGAMALFGEKYGDVVRVVS-----AGDYSVELCGGIHVSNTAEIGLFKILS 688 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG A + Q E L++ A LK V RV+ + E ++++ Sbjct: 689 ESGIGAGTRRIEAVTGAGAYEVMNQQIETLEAAAKLLKTKPLEVPARVQALQAEIKEVER 748 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + S I V ++ + D L+S++D L+ K+ S +I+L Sbjct: 749 ASESLKAKLANIEASSLTDAIETIGGVQLIAKRVDGQDMDALRSMVDDLKGKLGSAVIIL 808 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + E K +++ VT+DL DR F+A L + A GGGG GGRP MAQ+GG + K D Sbjct: 809 GSANGE-KVNLVAGVTKDLNDRGFHAGKLIKEVATRCGGGG-GGRPDMAQAGGRDATKLD 866 Query: 887 QAIAGVASFLK 897 +A+ + +++ Sbjct: 867 EALKFASHYVE 877 >gi|229146959|ref|ZP_04275323.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24] gi|228636558|gb|EEK93024.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24] Length = 880 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLITQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|228902916|ref|ZP_04067057.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] gi|228967463|ref|ZP_04128492.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792240|gb|EEM39813.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228856700|gb|EEN01219.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] Length = 880 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + +A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|320161086|ref|YP_004174310.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1] gi|319994939|dbj|BAJ63710.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1] Length = 911 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 354/926 (38%), Positives = 527/926 (56%), Gaps = 47/926 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M IR TF++FF + GH +PSSSL+P D TL+FTN+GMV FK++F G + Y Sbjct: 1 MKKWTGVEIRQTFIDFFVQRGHTFVPSSSLVPGGDQTLLFTNAGMVQFKDVFLGTDHRPY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+R GKHNDLD+VGR + HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + Sbjct: 61 SRAVNSQKCMRVAGKHNDLDDVGRDDTHHTFFEMLGNWSFGDYYKKEAIAWAWELLTQVY 120 Query: 119 DLDQRRLYITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 LD RLY T + + DEEA ++W+ + + ++ DNFW MA+TGPCGP Sbjct: 121 QLDPARLYATCFKDEKGDIPTDEEAAEVWRSQPNFNPEHVLFFGRKDNFWEMADTGPCGP 180 Query: 172 CSEIFFDQGEC------IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CSEI D+G +PG + + + +R++EIWNLVF+Q+ + + E LP+ +D Sbjct: 181 CSEIHIDRGPEACDKKGVPGHVCRVNGDCKRFLEIWNLVFIQYNRLSPTELEPLPQRHVD 240 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSS 283 TGMG ER+ ++LQ ++NY DL L+Q ++++TG NI +RVI DH R+++ Sbjct: 241 TGMGFERLVSLLQGVSSNYRTDLLWPLLQKTQELTGHTDAEREANITPYRVIADHARAAT 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 FLIADG++P N GR YV R I+RRA + +G EP + + + G YPEL++ Sbjct: 301 FLIADGVVPGNTGRNYVCRMIIRRAARFGGKIGLKEPFLAKVAEVVIQNYGDFYPELVRN 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ERF +TL+ G+ L L L ++IL+G AF LY THGLPL++ Sbjct: 361 RTAILDGITREEERFQRTLESGMKELQESLDGLKGKGEKILDGKKAFDLYATHGLPLELT 420 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 +DI +GL +D F A+EE R + A G + + Sbjct: 421 RDIAQEQGL-DVDQQGFRDAMEEHRLASGAGKAFGPLGGEDVDLYRPA------------ 467 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L + + K + P + V + A+ ++G+ V +G +VEV+ +T FY Sbjct: 468 -LESLQAEGKLGKAGVEYNPYEWLE-VEGELLALFREGQRVSSVSAGDQVEVLLPRTGFY 525 Query: 522 AEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 EAGGQ+ D G + +++T+++K A G+ VH V RG ++ +D Q Sbjct: 526 VEAGGQVSDAGTIVSVNEPRWEIRVTEMRKPAAGVIVHVGEVVRGTPTVGDWVIARVDTQ 585 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 RR + NH+ATHLLH L +LG H Q GS + PD LRFD TH +P+T +L+ IE Sbjct: 586 RRRDIMRNHTATHLLHAELQEVLGEHARQAGSLVAPDRLRFDFTHPEPLTPEQLERIEAG 645 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN I +N+P+ TR+ ++AIA GA AL G KY + VR V + D S LCGGTH Sbjct: 646 VNRAILENIPLQTRVKPLQEAIAEGAMALFGEKYGEVVRTVMIGETD--PLSYELCGGTH 703 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TG+I L IVSE S AG+RRIEA+TG+ A + + ++ A L S V Sbjct: 704 VHETGDIGLFLIVSEGSAAAGVRRIEAVTGRGAYELVQKRFRNMRKTAEMLSASMDEVPE 763 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNV----EDLSCHK-IADVNFMSHIISEVDSKELKSVM 813 RVE + +E L+ A + Q+ +DL I DV ++ +I VD+ L+S+ Sbjct: 764 RVENLLDEMSILRKAVASLRQQVASLAFDQDLEKVTFIEDVAVLTSLIQGVDADTLRSLA 823 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 D +++ +G+++L + + K ++ VT+DL+ R F+A DL + A V+GGGG GGRP Sbjct: 824 DRFRQRYSTGVVVLASVV-DGKPVIIGAVTDDLVKRNFHAGDLVKRVAAVVGGGG-GGRP 881 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ+GG + ++ +A+ ++K+ Sbjct: 882 TLAQAGGRDVSRLSEALDQTYGYVKE 907 >gi|30264458|ref|NP_846835.1| alanyl-tRNA synthetase [Bacillus anthracis str. Ames] gi|47529915|ref|YP_021264.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187280|ref|YP_030532.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|65321756|ref|ZP_00394715.1| COG0013: Alanyl-tRNA synthetase [Bacillus anthracis str. A2012] gi|165872747|ref|ZP_02217375.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167636505|ref|ZP_02394802.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|167638586|ref|ZP_02396862.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|170689638|ref|ZP_02880820.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|170709398|ref|ZP_02899809.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|177653242|ref|ZP_02935494.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|190566972|ref|ZP_03019888.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|227817167|ref|YP_002817176.1| alanyl-tRNA synthetase [Bacillus anthracis str. CDC 684] gi|229602565|ref|YP_002868676.1| alanine--tRNA ligase [Bacillus anthracis str. A0248] gi|254684144|ref|ZP_05148004.1| alanyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066] gi|254736491|ref|ZP_05194197.1| alanyl-tRNA synthetase [Bacillus anthracis str. Western North America USA6153] gi|254741529|ref|ZP_05199216.1| alanyl-tRNA synthetase [Bacillus anthracis str. Kruger B] gi|254751372|ref|ZP_05203409.1| alanyl-tRNA synthetase [Bacillus anthracis str. Vollum] gi|254757704|ref|ZP_05209731.1| alanyl-tRNA synthetase [Bacillus anthracis str. Australia 94] gi|33301676|sp|Q81LK0|SYA_BACAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|30259116|gb|AAP28321.1| alanine--tRNA ligase [Bacillus anthracis str. Ames] gi|47505063|gb|AAT33739.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181207|gb|AAT56583.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|164711523|gb|EDR17072.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167513434|gb|EDR88804.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|167528098|gb|EDR90895.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|170125697|gb|EDS94613.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|170666408|gb|EDT17189.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|172081524|gb|EDT66596.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|190561963|gb|EDV15932.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|227003572|gb|ACP13315.1| alanine--tRNA ligase [Bacillus anthracis str. CDC 684] gi|229266973|gb|ACQ48610.1| alanine--tRNA ligase [Bacillus anthracis str. A0248] Length = 880 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 353/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D GC + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AGIRRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGIRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229192600|ref|ZP_04319561.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876] gi|228590907|gb|EEK48765.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876] Length = 880 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVAAESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|30022464|ref|NP_834095.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|206969900|ref|ZP_03230854.1| alanyl-tRNA synthetase [Bacillus cereus AH1134] gi|229081653|ref|ZP_04214148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2] gi|229111861|ref|ZP_04241407.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|229129669|ref|ZP_04258637.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|229180664|ref|ZP_04308004.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W] gi|296504879|ref|YP_003666579.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171] gi|33301672|sp|Q817Z0|SYA_BACCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29898022|gb|AAP11296.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|206735588|gb|EDZ52756.1| alanyl-tRNA synthetase [Bacillus cereus AH1134] gi|228602809|gb|EEK60290.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W] gi|228653786|gb|EEL09656.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|228671617|gb|EEL26915.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|228701657|gb|EEL54148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2] gi|296325931|gb|ADH08859.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171] Length = 880 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|295399321|ref|ZP_06809303.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|294978787|gb|EFG54383.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] Length = 877 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 349/915 (38%), Positives = 522/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + VQK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNVQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + RL +T++ ED+EAF++W K GL ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFEPERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEEFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ N++ DLF +I+A+E+++G +Y + V +VI DH+R+ +F I DG Sbjct: 234 MCSILQGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ +A+ L P M L+P + MG YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL GL +L V+ + ++++G+ F+LYDT+G P+++ ++ Sbjct: 354 IKTEEERFHETLHEGLAILASVIEKEKERGSDVISGEDVFRLYDTYGFPVELTEEYAQEE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RARA + S + L + + F+GYD L Sbjct: 414 GMK-VDHEGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKVESHFVGYDEL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V IV+ G + +E G++ +++ D TPFYAE+GGQ+ Sbjct: 466 ------------------HAQSKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + R + DVQK G +HH IVE+G L+ + + ID R + NH+ Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD +H + EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ +A LK S + R++ + E R Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + ++ + ++ ++ D L++++D L++K+ S Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + E K S++ +T+DL+++ ++A L + A GGGG GGR MAQ+GG + Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVAVRCGGGG-GGRADMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 K +A+ V +++K Sbjct: 861 GKVGEALQYVETWIK 875 >gi|237741671|ref|ZP_04572152.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13] gi|229429319|gb|EEO39531.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13] Length = 867 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 328/909 (36%), Positives = 507/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IE+ VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISY 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 N E+A GA L G KY D+VRVV V S+ LC GTH+ + G+I L I+SE Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCEGTHIDNIGKIGLFKIISE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + L + LK + N+V +VE+ E ++ + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I V + + +++L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L+D+ A DL + A+ + GG GGGR AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLIDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVRGIIE 863 >gi|307152653|ref|YP_003888037.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822] gi|306982881|gb|ADN14762.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822] Length = 881 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 337/906 (37%), Positives = 510/906 (56%), Gaps = 50/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL+F+ K H++LPS+SL+P DPT++ T +GM+PFK IF GQ+K Y T Sbjct: 9 SGSEIRSYFLDFYAKKEHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQKSDYPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFGLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+ ++V+ ED+EAF+LW+ G+ +I R+ DNFW TGPCGPCSE+++D Sbjct: 124 NRIIVSVFQEDDEAFELWRDKIGIPPHRIKRMGEEDNFWKSGPTGPCGPCSELYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GDKNIDLEDDSRFIEFYNLVFMQYNRDAQGNLTPLQNKNIDTGMGLERMAQILQKVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ++ ++ G+ Y+ + + +VI DH+R+ +IADGI +N GRGY Sbjct: 243 NYETDLIFPIIQSAAEIAGIDYKKADEKTKISLKVIGDHVRAVVHMIADGITASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + + + YP + + I+ L+ E+ F Sbjct: 303 ILRRLIRRVVRHGRLIGIDGAFINKVAEVAISLSEDIYPIVRVRETPIKAELQKEEAAFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+RG LL +++ + + + ++G AF LYDT+G PL++ Q+I +GL +D Sbjct: 363 VTLERGEKLLSEIIADVKRRKKKQISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDEDQ 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN+ +++Q+ R++A + T + L E TQF+GY Sbjct: 422 FNEEMKKQQERSKAAHETIDL-TVQGSLDKLAEHIHPTQFLGYQDAASV----------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + ++ ++ G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G G+ Sbjct: 470 ------------AQIEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYITGE 517 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + +++ DV +K FVH VERG + ++ TID RR++ +H+ATHLL AL Sbjct: 518 NLVIRVEDV-QKESAFFVHFGRVERGTVSVGDTITATIDRACRRRVQAHHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+ VSQ GS +T D LRFD + +T EL+ IED +N IA+ T IM E Sbjct: 577 KKIVDESVSQAGSLVTFDRLRFDFNCPRAVTPQELQQIEDLINSWIAEAHDAHTYIMALE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY VRV+ V S LCGGTHV +T EI L I+SES I Sbjct: 637 EAKAKGAVAMFGEKYGAEVRVLDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G +L +D +K L KV + R+ + E + Sbjct: 692 SGVRRIEAVAGPAVLEYLNERDTVVKDLCDRFKVKPNEISDRITALQSELKATLKQLEAA 751 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L + + + + + + VD L + + LQ+K+ G ++L IS Sbjct: 752 QQELAIAKSDQLLANADAVGEFKVLVAEMEGVDPNGLMTAAERLQQKLGEGAVILGAISA 811 Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K A++ Sbjct: 812 EGKVSLVAAFSPKVVKEKKLQAGKFIGEVAKICGGGG-GGRPNLAQAGGRDPSKLKDALS 870 Query: 891 GVASFL 896 L Sbjct: 871 AAKKQL 876 >gi|228993127|ref|ZP_04153049.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442] gi|228999175|ref|ZP_04158757.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17] gi|229006723|ref|ZP_04164357.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4] gi|228754584|gb|EEM03995.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4] gi|228760792|gb|EEM09756.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17] gi|228766586|gb|EEM15227.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442] Length = 880 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 354/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY G + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRGGDVEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ ++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTAISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHTGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQSLHKIVVEEGTLTKESAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATH+LH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHILHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFTEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + E K ++L VT+DL++ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLAAV-NEDKVNILAGVTKDLINQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + D A+A V ++K Sbjct: 861 PAQVDDALAFVEEYVK 876 >gi|218231748|ref|YP_002369198.1| alanyl-tRNA synthetase [Bacillus cereus B4264] gi|218159705|gb|ACK59697.1| alanine--tRNA ligase [Bacillus cereus B4264] Length = 880 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|254724685|ref|ZP_05186468.1| alanyl-tRNA synthetase [Bacillus anthracis str. A1055] Length = 880 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D GC + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|282850479|ref|ZP_06259858.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745] gi|282579972|gb|EFB85376.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745] Length = 871 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 337/909 (37%), Positives = 497/909 (54%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+KY N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKAAVIPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR RAR + + LK++ Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ +S V + + E ++ A G ++ V+ TPF+AE GGQLGDTG + Sbjct: 449 ----ELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G +++I + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GPMGKVEIHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A ++ +AS LK + R+ ++ E + Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLTEAKDTAKELE 739 Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +L+ + + DV F+ + EL+ + D K+ SG++++ Sbjct: 740 QIRKELSAAGAADIIAGKVVVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I + K + + V++D++ + A ++ + +A+ + GG GGGRP MAQ+GG K +A Sbjct: 800 IMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858 Query: 889 IAGVASFLK 897 + LK Sbjct: 859 LKAGGEALK 867 >gi|157693144|ref|YP_001487606.1| alanyl-tRNA synthetase [Bacillus pumilus SAFR-032] gi|205829985|sp|A8FFM9|SYA_BACP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157681902|gb|ABV63046.1| alanine--tRNA ligase [Bacillus pumilus SAFR-032] Length = 878 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 340/915 (37%), Positives = 510/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P +DPTL++ NSG+ K F G+ P Sbjct: 1 MKTLTSAQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT + Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D L +TV+ EDEEA+ LW+ G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPNLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE + E ERY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGESYGHDMNDPELYPGGENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N+D DLF +I+A E ++G Y +VI DH+R+ +F ++DG Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + M YP++ + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ ++G+ FKLYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLNEGLAILSEVIKKERDKGSSQISGEDVFKLYDTYGFPVELTEEY-AED 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D F +E+QR RAR +GS + +L + + F+GY+ L Sbjct: 413 EHMTVDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENLTAVAH 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 M E ++Q GEIV EA G V+++ D+TPFYAE+GGQ+ Sbjct: 471 MIE-----------------------LLQNGEIVSEAHEGDTVQILLDETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + I DV+K G VH +V G + + + ++ R+ + NH+ Sbjct: 508 ADKGTLKSAEVIIDIKDVKKAPNGQHVHEGVVVSGTAKKGLVVTAEVESALRKGIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LGSHV+Q GS + + LRFD +H +T EL IE VN+ I + + Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGIS 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VAIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AG RRIEA+TG+ A L Q L+ AS LK + +V R+ + + + Sbjct: 683 KIASESGIGAGTRRIEAVTGKGAYEELNDQLGILEQAASELKSNTKDVPKRIASLQADLK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++Q + +L+ + +I V ++ ++ D L++++D L+ K+ S Sbjct: 743 EVQRENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + + K ++ VT+D++++ +A L + +A++ GGGG GGRP MAQ+GG Sbjct: 803 VIVLGAV-QNGKVNISAGVTKDVIEKGLHAGKLVKQAAEICGGGG-GGRPDMAQAGGKQP 860 Query: 883 NKADQAIAGVASFLK 897 K ++A+ V +K Sbjct: 861 EKLEEALTSVEESVK 875 >gi|228954673|ref|ZP_04116696.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805000|gb|EEM51596.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 880 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229086952|ref|ZP_04219109.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44] gi|228696328|gb|EEL49156.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44] Length = 880 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ ED+EAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDVEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHAGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ ++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDGLQAGEEGHLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A++ V ++K Sbjct: 861 PAQVEEALSFVEEYVK 876 >gi|229032038|ref|ZP_04188021.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271] gi|228729283|gb|EEL80277.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271] Length = 880 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQEGFESEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ G+ + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGKYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229543743|ref|ZP_04432803.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1] gi|229328163|gb|EEN93838.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1] Length = 881 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 366/920 (39%), Positives = 526/920 (57%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR+ FL+FF++ GH++ PS+SLIP NDP+L++ NSG+ K F G P Sbjct: 1 MKKRSSAEIRSMFLDFFKEKGHKVEPSASLIPVNDPSLLWINSGVATLKKYFDGTVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E AI AW+LLT K Sbjct: 61 PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAIAWAWELLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + + +LY+TVY +D ++ WKK G+S D II + NFW + E GP GP +EIF Sbjct: 117 WFGMPKEKLYVTVYPDDLDSIACWKK-IGVSPDHIIPL--EGNFWEIGE-GPSGPDTEIF 172 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF E LPK +IDTGM Sbjct: 173 FDRGEKYDPERLGIRLLQEDMENDRYIEIWNIVLSQFNAIPGVPRSEYPELPKKNIDTGM 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFL 285 GLERMA VLQ NYD DLF +IQ E+++G KY N +VI DH+R+ +F Sbjct: 233 GLERMACVLQGVDTNYDSDLFMPIIQEVEKISGKKYRAGNKEADTAFKVIADHIRTVAFA 292 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +ADG LP+NEGRGYVLRR++RRA+ YA L M L+P + M S YPE+ + Sbjct: 293 VADGALPSNEGRGYVLRRLLRRAVRYAIQLDIHGAFMYKLVPTVGRIMNSYYPEVEKNAD 352 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 +++ +RSE+ERF +TL+ GL +L+ + + E L G+ F LYDT+G P+++ ++ Sbjct: 353 FVQKVVRSEEERFQETLNEGLSILEERIRAAKKNGLEQLPGEDIFMLYDTYGFPVELTEE 412 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +GL D F + +E QR RAR S + + L ++FIGYD L Sbjct: 413 YAHDQGLRA-DHEGFEKEMERQRERARNARQQAESMSVQGGV--LGNITVKSEFIGYDHL 469 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G ++ V +++ G+I E A SG+++ + DQTPFYAE Sbjct: 470 EG-----------------------TAHVAVLLKDGDITESAASGEEIRFILDQTPFYAE 506 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ D G +G+++++T+VQK G +H +V G ++T + +D RR Sbjct: 507 SGGQIADHGTLTAEGLKVEVTNVQKAPNGQNLHQGVVVSGTIKTGQEVFAQVDGAKRRDT 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG HV+Q GS + P LRFD +H +T EL+ IE VN+ I Sbjct: 567 EKNHSATHLLHQALKDVLGVHVNQAGSLVEPGRLRFDFSHFGQVTEEELEKIETIVNEKI 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +LPV T + ++A A GA AL G KY + VRVV + G +S LCGG HVS+T Sbjct: 627 WASLPVTTDLKKLDEAKAMGAMALFGEKYGEIVRVVQM-----GDYSLELCGGCHVSNTA 681 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I L IVSES I AG RRIEA+TG+ A + Q LK ++ LK + R++ + Sbjct: 682 QIGLFKIVSESGIGAGTRRIEAVTGKYAYGLMQEQLHLLKEASAKLKAKPTELPDRIDAL 741 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E ++ Q +A +L + + +N ++ + D +L+++ D L++ Sbjct: 742 QQELKEAQRENASLAAKLANIEAGSLVDRVKVVDGINVLAAKVEAGDMNQLRNMADDLKQ 801 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+ SGII+L + E KAS + VT+DL+++ ++A L + A GGGG GGRP MAQ+ Sbjct: 802 KLGSGIIVLAAAT-EGKASFIAGVTKDLVEKGYHAGKLVKEVASRCGGGG-GGRPDMAQA 859 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG + D A+ V ++K Sbjct: 860 GGKQPEQIDAALQIVEEWVK 879 >gi|42783517|ref|NP_980764.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987] gi|48428502|sp|P61697|SYA_BACC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|42739446|gb|AAS43372.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 880 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K+QS Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|312135147|ref|YP_004002485.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] gi|311775198|gb|ADQ04685.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] Length = 879 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 345/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 1 MATDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 61 TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL +I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 117 RERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 175 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 176 DKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + +VT +Y + V+ RVI DH+R F+I DGILP+NEGR Sbjct: 236 VDSLFDIDIVKAIRDKVCEVTSYEYRKDTEKDVSVRVITDHIRGIVFMIGDGILPSNEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG E + ++ + ++YPEL+Q I++ L +E+ R Sbjct: 296 GYVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNSYPELVQKVEYIKKVLYNEESR 355 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL +L+ + L K++ ILNG++AFK+YDT+G PLD+ ++I +G+ +D Sbjct: 356 FNQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQ 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +++Q+ RARA L + + I + E T F+GY+ L+ Sbjct: 415 ERFDELMQQQKERARAAQKELENVGWKDINIVIDEDI-ETVFVGYETLKQ---------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + I + E V A V+ D+TPFYAE+GGQ+ D G Sbjct: 464 -------------ESKILKIFMESEEVAYAKEEDVCFVILDKTPFYAESGGQIADKGILE 510 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G+ ++ DV+K +G +H V +G + S+V +D R NH+ATHLLH Sbjct: 511 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEDLRFATMKNHTATHLLHS 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG H Q+GS ++PD LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 571 ALRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY++ VRV+ + S LCGGTHV +TG+I + I+SESS Sbjct: 631 LDSALRMGAIALFDEKYSNLVRVIKI-----DDFSMELCGGTHVDNTGQIGMFKIISESS 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG + ++ + LK L S +K S +V ++E++ + + L+ Sbjct: 686 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIVSKIEQLENKIKNLENEV 745 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + +LS + + + D +K + D ++++ S I+L Sbjct: 746 EKYKLLVVENELSLLFSKAIDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 804 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K +VL+ +++ + + + + R V+ GG GGGRP AQ GG + K D A Sbjct: 805 LEQGNKVTVLMSCSKEAVKKGVDCGKVVREVCSVV-GGKGGGRPDFAQGGGNDILKIDIA 863 Query: 889 IAGVASFLK 897 + + LK Sbjct: 864 VQTAENILK 872 >gi|229587224|ref|YP_002845725.1| alanyl-tRNA synthetase [Rickettsia africae ESF-5] gi|228022274|gb|ACP53982.1| Alanyl-tRNA synthetase [Rickettsia africae ESF-5] Length = 878 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 408/901 (45%), Positives = 561/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL R +D F + Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I +H I++RG + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIIHKCILKRGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+ Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + + +D LKS+ S K ++ ++ +V I E ++++ K Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|229071897|ref|ZP_04205108.1| Alanyl-tRNA synthetase [Bacillus cereus F65185] gi|228711193|gb|EEL63157.1| Alanyl-tRNA synthetase [Bacillus cereus F65185] Length = 880 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T + S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVAIESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|324328292|gb|ADY23552.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 880 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTAVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K+QS Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|228910224|ref|ZP_04074042.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200] gi|228849388|gb|EEM94224.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200] Length = 880 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + +A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229175062|ref|ZP_04302580.1| Alanyl-tRNA synthetase [Bacillus cereus MM3] gi|228608430|gb|EEK65734.1| Alanyl-tRNA synthetase [Bacillus cereus MM3] Length = 880 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+ + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVLVVGEVMKDFYPEVVEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQEGFESEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|254303692|ref|ZP_04971050.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323884|gb|EDK89134.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 867 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 335/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ L Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 DKDKLWVTVFTTDDEAERIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K NN++ DL +++ + ++TG +Y + +VI DH R+ +FL+ DG++P+NE Sbjct: 236 QGKANNFETDLLFPILEEAAKITGSQYGKNPEIDFSLKVITDHARAVTFLVNDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGYT+ M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGITKFTGYEKIEDEGKLLSIR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 EA G K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDSFEAKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLEVDIVKRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + + LRFD +H + +T+ +L IED VN+ I + + V Sbjct: 563 HKALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVAVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSE Sbjct: 623 HTIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + LK + LK + N+V +VE+ E R + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEREEANILKDIEKKLKATNINLVEKVEKTLETLRDTEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I + + +++L++++D ++ + GII+L Sbjct: 738 LETLKQKLALFETKSAISDMEEIGGAKVLIATFKDKSTEDLRTMIDTIKDNNEKGIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K S + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K A Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVREIIE 863 >gi|229163337|ref|ZP_04291289.1| Alanyl-tRNA synthetase [Bacillus cereus R309803] gi|228620118|gb|EEK76992.1| Alanyl-tRNA synthetase [Bacillus cereus R309803] Length = 880 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ ED+EAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRDGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQAGFESEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNSKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229152592|ref|ZP_04280781.1| Alanyl-tRNA synthetase [Bacillus cereus m1550] gi|228630853|gb|EEK87493.1| Alanyl-tRNA synthetase [Bacillus cereus m1550] Length = 880 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H ++E G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVIEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|209523613|ref|ZP_03272167.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328] gi|209496018|gb|EDZ96319.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328] Length = 876 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 337/904 (37%), Positives = 494/904 (54%), Gaps = 51/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL F+ + H+++PS+SL+P DPT++ T +GM+ FK IF GQ T Sbjct: 9 SGSEIRQKFLNFYAERQHKIMPSASLVPE-DPTVLLTIAGMLQFKPIFLGQRPREVNRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EAF +W+ G+ +I R+ DNFW TGPCGPCSEI++D Sbjct: 124 ERLIVSVFEEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ N Sbjct: 184 -KGDDNIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + G+ Y ++ + +VI DHLR+ LIADG+ +N GRGY Sbjct: 243 NYETDLIFPIIKTAADLAGIDYAKSDDKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G T + YP + + +I+ L+ E+ RF Sbjct: 303 ILRRLIRRVVRHGRLIGITGEFTTKVAETAIGLSEDVYPNTRERERVIKGELQREESRFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL +L+ + + ++G AF LYDT+G PL++ Q+I GL +D+ F Sbjct: 363 ETLERGEKLLAELLAK--QPDQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVDGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR R++A + T + L E+ T F+GYD Sbjct: 420 AEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTTFLGYDFPDS-------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V+A++ G+ V EAV+G +V++V DQTPFY E+GGQ+GD G + Sbjct: 465 ---------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D KK IF+H VERG L +++ ID RR+ NH+ATHLL AL Sbjct: 516 -IVRVDDVKKDSDIFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+ EL+ +E+ VN IA+ P M E+A Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRVV S LCGGTHV++T EI L IVSE+ I AG Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIAAG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ GQ +L +D +K L LK + R + E + Q K Sbjct: 690 IRRIEAVAGQSVLDYLNVRDAVVKELGDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + ++ D+ + + VD + LK+ + LQ+K+ ++L +S + Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS-DG 808 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K +A++ Sbjct: 809 KVSLVAAFSPVVVKDKKLQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDPSKLPEALSTA 867 Query: 893 ASFL 896 S L Sbjct: 868 KSQL 871 >gi|229048096|ref|ZP_04193669.1| Alanyl-tRNA synthetase [Bacillus cereus AH676] gi|228723251|gb|EEL74623.1| Alanyl-tRNA synthetase [Bacillus cereus AH676] Length = 880 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K++ +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKINPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|225873568|ref|YP_002755027.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196] gi|225793929|gb|ACO34019.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196] Length = 982 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 360/1009 (35%), Positives = 520/1009 (51%), Gaps = 149/1009 (14%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR TFL FF+ GH + SSSL+P NDPTL+FTN+GM FK++F G E Y T Sbjct: 5 SGSDIRETFLRFFETKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGLEHRDYARAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+L+T + Sbjct: 65 TSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKADAIAYAWELVTSLDWLGI 124 Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + +LY+T++ DEEA++LW+ G+ A++I DNFW M +TGPCGPCSE Sbjct: 125 PKEKLYVTIFKGENGVPRDEEAYELWRGQ-GVPAERIFEFGAKDNFWQMGDTGPCGPCSE 183 Query: 175 IFFDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 IF+D G PG ++ RY+EIWNLVFMQF++ E +LPK SIDTG GLE Sbjct: 184 IFYDMGMDAAETPGVDKPFGQDDARYVEIWNLVFMQFDRSANGELALLPKPSIDTGAGLE 243 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--------------------- 270 R+A+VLQ K +N++ DLF LIQ + ++TG++ + Sbjct: 244 RLASVLQGKVSNFETDLFTPLIQKAAELTGVRVSQSASQQVSEPAKGSQGEGDVSGNDLS 303 Query: 271 -----------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307 + R+I DH R+++FLI+DG+LPANEGRGYVLR+I+RR Sbjct: 304 RAAHGAKQEGVLAPEGKELTGNASLRIIADHARAATFLISDGVLPANEGRGYVLRKILRR 363 Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367 + + RLLG +P M ++ A+ EM AYPEL ++ + + + +E+ +F + L+ G Sbjct: 364 GIRHGRLLGQEQPFMGQMVYAVRDEMQVAYPELKESAERVAKVVEAEERQFARVLEVGSA 423 Query: 368 LLDGVLSH---------------------------------------------LGKDEIL 382 LD ++ + +L Sbjct: 424 QLDQLIRSEAAGNGSDSGDRWGSGAGTGDGAGFGDGSGFGGGSGSGAGFGDGSGSERRVL 483 Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442 +G AF LY+T+GLPLD M D G D+ F +A E+++RARA G + Sbjct: 484 HGREAFHLYETYGLPLDFMMDAARDAG-IDFDLTGFEEARAEEQARARASWKGGAKQSAS 542 Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502 ++ L T F GY LR + V AIV+ G+ V Sbjct: 543 PVYREL----PKTIFEGYGKLRVEG----------------------AEVLAIVKDGQGV 576 Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIV 560 + A G VEVV + T FYA++GGQ+GD G D + K H V Sbjct: 577 KAANPGDAVEVVLNATSFYADSGGQMGDHGWLYSDDHNSVVAEVSGCTKPVQGVFAHKAV 636 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 R L + +D R NH+ THLLH AL +LG+HV Q GS + P LRFD Sbjct: 637 LRQTLALGDKVDTVVDADFRAATRRNHTGTHLLHAALREVLGTHVKQAGSLVEPGRLRFD 696 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRV 678 +H I ELK IED +N + N V T D A AL G KY +RVRV Sbjct: 697 FSHFTQIADEELKDIEDLINRQVLVNTRVETIEDVPIDVAVNEYHAMALFGEKYGERVRV 756 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 V + G S+ LCGGTH +TGEI ++ ++SE S+ +G+RR+EA+TG A Sbjct: 757 VKI-----GDFSTELCGGTHTGATGEIGVVKLMSEGSVSSGVRRVEAVTGLGALDEFRRG 811 Query: 739 DEKLKSLASFLK-----VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SC 788 + + LA+ L + R+ EE +KL+ + +++ + Sbjct: 812 YQ-VAQLAAQLAPSAEMSPAEALQHRLAAQDEELKKLKRELDQVRMKSAASAVSGAANQA 870 Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848 ++ V ++ + ++D ++++++D L+ ++ SG+++L +E K ++++ VT+DL Sbjct: 871 AEVNGVKVLAQRVDQLDRGQMRTLVDNLRNQLGSGVVVLGSAQEEGKVALIVGVTKDLTG 930 Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + A + AK + GG GGGRP MA++GG + ++ D A+AGV +K Sbjct: 931 KVQAGKVVAQVAKQV-GGSGGGRPDMAEAGGKDASQLDAALAGVPEVVK 978 >gi|317128237|ref|YP_004094519.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] gi|315473185|gb|ADU29788.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] Length = 878 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 353/915 (38%), Positives = 533/915 (58%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+FF++ GH++ PS+SL+P DPTL++ NSG+ K F G+ P Sbjct: 1 MKKLSSAEVRQMYLDFFKEKGHDVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAILWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +L +T+Y +D+EAF+LW K GL +IIR+ +NFW + E GPCGP +EIF Sbjct: 117 WIGFDPEKLSVTIYPDDDEAFELWNKEIGLPESRIIRL--EENFWDIGE-GPCGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDHNDPELYPGGENERYLEIWNLVFSQFNHNADGSYMPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ N+D DLF +I +E ++G Y + +VI DH+R+ +F I DG Sbjct: 234 MVSVIQDAKTNFDTDLFLPIIHETENISGSNYGKNAVDDTAFKVIADHIRTVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + + M YPE+ + + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIHIERPFMYELVPVVGSVMKEFYPEVTEKEAFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ E+++G F+LYDT+G P+D+ ++ + Sbjct: 354 IKNEEERFHETLNEGLAILTKVIEKAKGENKEVIDGVDVFRLYDTYGFPVDLTEEYVLEA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G + +D F +++QR RARA GS T+ L ++F+GYDLL Sbjct: 414 GFS-VDRDGFESEMKKQRERARAARQDAGSMQTQDEI--LGNIKEESEFVGYDLLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + ++V IV+ V EA G+KV+V+ D+TPFYAE+GGQ+ Sbjct: 467 -------------------IPAVVSVIVKDKAFVNEAKQGEKVQVITDRTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + L + +V+K G +H V +G L M+ +D QNR+ + NH+ Sbjct: 508 ADKGSFENENVTLAVLEVKKAPNGQNLHTVEVIKGTLTKNMTFAAKVDAQNRKGVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + D LRFD +H I+ EL+ IE VN+ + + Sbjct: 568 ATHLLHQALKDVLGGHVNQAGSLVAQDRLRFDFSHFGQISEDELEKIESIVNEKVWDGIE 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + +A GA AL G KY D VRVV V G +S LCGG HVS++ EI L Sbjct: 628 VQTMYKSLTEAKEMGAMALFGEKYGDTVRVVRV-----GDYSLELCGGCHVSNSAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE I AG+RRIEA+T + A + GQ + LK A LK +V R+E++ ++++ Sbjct: 683 KIVSEGGIGAGVRRIEAVTAKNAYQFMNGQLDVLKESAHLLKAKLNDVPFRIEQLQQQFK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L+ + +L+ + ++ ++ + ++ D L+ + D+L++KI+SG Sbjct: 743 ELERENESFAAKLSQVEAGNVMDELKEVDGISILVKKVNVPDMNRLRQMADSLKEKIESG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L ++ + K +++ V++DL+ ++A ++ + A GGGG GGRP MAQ+GG + Sbjct: 803 ILVLAAVNND-KVNIITSVSKDLVKEGYHAGNIVKEVATRCGGGG-GGRPDMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 +K D+A+ V LK Sbjct: 861 SKLDEALKIVPDLLK 875 >gi|229019610|ref|ZP_04176423.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273] gi|229025848|ref|ZP_04182246.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272] gi|228735459|gb|EEL86056.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272] gi|228741690|gb|EEL91877.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273] Length = 880 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQVGG-----YSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L +S + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASVS-DDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229158004|ref|ZP_04286075.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342] gi|228625457|gb|EEK82213.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342] Length = 880 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|89100981|ref|ZP_01173826.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911] gi|89084317|gb|EAR63473.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911] Length = 877 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 354/911 (38%), Positives = 521/911 (57%), Gaps = 56/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FLEFF++ GH + PS+ L+P +DP+L++ NSG+ K F G+ P +T Sbjct: 5 TGSEIRRLFLEFFKEKGHSVEPSAPLVPHDDPSLLWINSGVATLKKYFDGRVIPENPRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT Sbjct: 65 NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIDWAWEFLTDERWIGF 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +T++ EDEEAF +W G+ ++IIR+ NFW + E GP GP +EIF+D+G Sbjct: 121 DKEKLSVTIHPEDEEAFSIWTNKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177 Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E ERY+E+WNLVF +F LPK +IDTGMGLERMA+V Sbjct: 178 PEYGDDQNDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMASV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q N+D DLF +I A E+++G KY +N +VI DH+R+ +F I DG LP+N Sbjct: 238 VQNVATNFDTDLFMPIIHAVEKISGSKYGESNEQDTAFKVIADHIRTVAFAIGDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ + P M L+ + M YP++ + I++ +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKQININRPFMFELVDVVGEIMADFYPQVTEKAEFIKKVIKNE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL+ GL +L V+ + I+ G F+LYDT+G P+++ ++ G+ Sbjct: 358 EERFHETLNDGLSILSSVIKKEKEKGSNIIPGSDVFRLYDTYGFPVELTEEYAEEEGMK- 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +E QR RAR +GS ++ L + ++F+GY+ L Sbjct: 417 IDQDGFEAEMEGQRERARTARQDVGSMKVQEGV--LGDIKTESRFVGYEGLE-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S+V I++ G++ E A +G++V+++ DQTPFYAE+GGQ+ D G Sbjct: 467 ---------------AKSVVAVIIKDGQVAEAAGAGEEVQLILDQTPFYAESGGQIADNG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+G+++ I DVQK G +H A+VE GIL TE + +D +R ++ NH+ATHL Sbjct: 512 VLEGEGVKVIIKDVQKAPNGQNLHSAVVESGILETEAGVTAKVDPDSRNKVIKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + PD LRFD +H + EL+ IE+ VN+ I +L VV Sbjct: 572 LHQALKDVLGTHVNQAGSLVGPDRLRFDFSHFGQVKEDELEKIEEIVNEKIWSSLNVVIE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++A A GA AL G KY D VRVV V G +S LCGG HV +T I L I+S Sbjct: 632 NKGIDEAKAMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVRNTSAIGLFKIIS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA TG+ A L Q L A+ LK S +V RV+ + E R+LQ Sbjct: 687 ESGIGAGTRRIEAATGEAAYKLLKEQVNILTEAAASLKSSPRDVASRVDALLGEMRQLQR 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + +L + + + +++ + D L+++ D L++K+ S +++L Sbjct: 747 ENESLSAKLGNIEAGSLVSKAKEENGITYLAAKVQAADMNNLRNMADDLKQKLGSAVVVL 806 Query: 828 VGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + E K +++ VT+D + ++A + + A GGGG GGRP MAQ+GG + K + Sbjct: 807 GSV-NEGKVNLIAAVTKDYIEKGYHAGKVIKEVAARCGGGG-GGRPDMAQAGGKDPEKLE 864 Query: 887 QAIAGVASFLK 897 A+ V ++K Sbjct: 865 SALQFVEEWVK 875 >gi|284050469|ref|ZP_06380679.1| alanyl-tRNA synthetase [Arthrospira platensis str. Paraca] Length = 876 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 337/906 (37%), Positives = 494/906 (54%), Gaps = 51/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL F+ + H+++PS+SL+P DPT++ T +GM+ FK IF GQ T Sbjct: 9 SGSEIRQKFLNFYAERQHKIMPSASLVPE-DPTVLLTIAGMLQFKPIFLGQRPREVNRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ ED+EAF +W+ G+ +I R+ DNFW TGPCGPCSEI++D Sbjct: 124 ERLIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ N Sbjct: 184 -RGDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + G+ Y ++ + +VI DHLR+ LIADG+ +N GRGY Sbjct: 243 NYETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + + YP + + +I+ L+ E+ RF Sbjct: 303 ILRRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL +L + E ++G AF LYDT+G PL++ Q+I GL +D+ F Sbjct: 363 ETLERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR R++A + T + L E+ T F+GYD Sbjct: 420 AEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTAFLGYDFPDS-------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V+A++ G+ V EAV+G +V++V DQTPFY E+GGQ+GD G + Sbjct: 465 ---------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D KK IF+H VERG L +++ ID RR+ NH+ATHLL AL Sbjct: 516 -IVRVDDVKKDSDIFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+ EL+ +E+ VN IA+ P M E+A Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRVV S LCGGTHV++T EI L IVSE+ I AG Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIAAG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ GQ +L +D +K L+ LK + R + E + Q K Sbjct: 690 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + ++ D+ + + VD + LK+ + LQ+K+ ++L +S + Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS-DG 808 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K +A++ Sbjct: 809 KVSLVAAFSPVVIKDKKLQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDPSKLPEALSTA 867 Query: 893 ASFLKK 898 S L + Sbjct: 868 KSQLIE 873 >gi|169831075|ref|YP_001717057.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] gi|205830046|sp|B1I370|SYA_DESAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169637919|gb|ACA59425.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 880 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 360/908 (39%), Positives = 542/908 (59%), Gaps = 50/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N S IR +LEFF GH ++PS+SLIP NDPTL++T++GMVPFK FTG P ++ V Sbjct: 1 MNSSEIRKRYLEFFAARGHRVIPSASLIPGNDPTLLWTSAGMVPFKPYFTGVATPEFRRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R D++ VGRT RHHTFFEMLGNFSFG YFKERAI AW+ +T++ L Sbjct: 61 VTCQKCLRT----PDIEMVGRTARHHTFFEMLGNFSFGDYFKERAIPWAWEFVTRDLGLA 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+I+VY +D EAF W+ + G+ A++I+R+ + NFW + GPCGPCSE+++D+G Sbjct: 117 PEHLWISVYLDDNEAFDHWRGL-GVPAERIVRLGRDTNFWEIG-VGPCGPCSEVYYDRGP 174 Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + +R++EIWNLVF+Q+ + + L IDTGMGLER+A+VLQ Sbjct: 175 AYGCESASCGPGCDCDRWLEIWNLVFIQYFRNEAGDYSPLESPGIDTGMGLERVASVLQG 234 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N+D DLF+ LI + V G++Y + +VI DH R+ +F IADG+LP+NEGR Sbjct: 235 VNTNFDTDLFRGLIDYTAGVLGVRYGDDPAGDAALKVIADHGRAITFAIADGVLPSNEGR 294 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ A LLG +P + + A+ +M AYPEL A+ + + +R E+ER Sbjct: 295 GYVIRRLLRRAVRKALLLGREKPFLEGVALAVIEQMAGAYPELETARDSVRKVVRFEEER 354 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL +G ++ +++ K L G AF+LYDT+G PL++ ++I +GL +D Sbjct: 355 FRQTLTQGNEIIGRLIAEARAEKRSTLEGAAAFQLYDTYGFPLELTREICAEQGL-AVDE 413 Query: 416 ISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F AL+ Q+ +AR+ E + +L+++ G T+F+GY+ L Sbjct: 414 AGFEAALKAQQQKARSSRRETRYVEERETFFRNLRDEIGLTRFVGYEQLEAD-------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V+A+++ G+ V A SG++V +V D TP YAE+GGQ+GD G Sbjct: 466 ---------------AGVRALIRDGQRVPAAGSGEQVSLVVDTTPCYAESGGQVGDHGLI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+ +R +ITD EG+ VH +VE G+L + + +D RR++ NH+ATHLLH Sbjct: 511 EGENVRGRITDTFAPVEGLHVHEVVVEAGVLEEGARIRILVDGSRRRKICRNHTATHLLH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L +LG+HV+Q GS + P+ LRFD TH +P++ AEL +E +N+I+ NL V + Sbjct: 571 RTLKAVLGTHVNQAGSLVAPERLRFDFTHIQPLSEAELAEVESRINEIVLSNLRVESFQT 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A GA AL G KY D VRVV ++ S LCGGTHV ST EI + I +ES Sbjct: 631 SFDRARELGAVALFGEKYGDLVRVVQIDG-----VSMELCGGTHVLSTAEIGPVKITAES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RR+EA+TG A + L ++E+L +A ++V +V VE + + +KLQ + Sbjct: 686 SVGAGLRRLEAVTGMEALAFLNSRNEQLHRIAQAVRVPVSELVVHVERLLDHQKKLQREN 745 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + +L V ++ V ++ + D EL+S++D L++++ S +I+L Sbjct: 746 EQLQDRLQVYEVKELLDRASTHEGVRILATSVRARDMAELRSMLDLLRERLGSAVIVLGS 805 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K S++ V+ DL+ R +A + + +A V GGGG GGRP MAQ+GG N K +A Sbjct: 806 AVN-GKVSLVASVSRDLVARGLHAGAIIKEAAAVAGGGG-GGRPEMAQAGGKNPEKLTEA 863 Query: 889 IAGVASFL 896 + + Sbjct: 864 LEKARQVV 871 >gi|291570537|dbj|BAI92809.1| alanyl-tRNA synthetase [Arthrospira platensis NIES-39] Length = 878 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 337/906 (37%), Positives = 494/906 (54%), Gaps = 51/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL F+ + H+++PS+SL+P DPT++ T +GM+ FK IF GQ T Sbjct: 11 SGSEIRQKFLNFYAERQHKIMPSASLVPE-DPTVLLTIAGMLQFKPIFLGQRPREVNRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L Sbjct: 70 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ ED+EAF +W+ G+ +I R+ DNFW TGPCGPCSEI++D Sbjct: 126 ERLIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFHPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ N Sbjct: 186 -RGDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + G+ Y ++ + +VI DHLR+ LIADG+ +N GRGY Sbjct: 245 NYETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + + YP + + +I+ L+ E+ RF Sbjct: 305 ILRRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFL 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL +L + E ++G AF LYDT+G PL++ Q+I GL +D+ F Sbjct: 365 ETLERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR R++A + T + L E+ T F+GYD Sbjct: 422 AEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTAFLGYDFPDS-------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V+A++ G+ V EAV+G +V++V DQTPFY E+GGQ+GD G + Sbjct: 467 ---------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D KK IF+H VERG L +++ ID RR+ NH+ATHLL AL Sbjct: 518 -IVRVDDVKKDSDIFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+ EL+ +E+ VN IA+ P M E+A Sbjct: 577 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRVV S LCGGTHV++T EI L IVSE+ I AG Sbjct: 637 KNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIAAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ GQ +L +D +K L+ LK + R + E + Q K Sbjct: 692 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 751 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + ++ D+ + + VD + LK+ + LQ+K+ ++L +S + Sbjct: 752 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS-DG 810 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K +A++ Sbjct: 811 KVSLVAAFSPVVIKDKKLQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDPSKLPEALSTA 869 Query: 893 ASFLKK 898 S L + Sbjct: 870 KSQLIE 875 >gi|218899557|ref|YP_002447968.1| alanyl-tRNA synthetase [Bacillus cereus G9842] gi|218542758|gb|ACK95152.1| alanyl-tRNA synthetase [Bacillus cereus G9842] Length = 880 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V++GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKKGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + +A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|257468000|ref|ZP_05632096.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|317062286|ref|ZP_07926771.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|313687962|gb|EFS24797.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] Length = 866 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 334/909 (36%), Positives = 514/909 (56%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF+ H+ S+SLIP +D TL+ T +GMVPFK F GQ++ Y Sbjct: 1 MLTGNQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L+++V+ D+EA ++W + ++++R+ ++N+W+ TG CGPCSEI D G Sbjct: 116 DKDKLWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A ++ Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K+NN++ DL L++ + ++T +Y + + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKSNNFETDLLFPLVEEAVKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + RLLG +E + ++ + + M +AYP+L I++ ++ E+ Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQSELFLYKMVDKVVSMMENAYPDLRSNIDHIKKVVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F +TLD+G+ L++ + L I L+G+V FKLYDT+G P ++ ++I + I Sbjct: 356 EKFSRTLDQGMQLVNQEIEKLKAAGITKLDGEVTFKLYDTYGFPYELTEEICQEK-EIEI 414 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + EQ+ +ARA + + +KYGAT+F GY L+ + + R Sbjct: 415 SKEEFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDKYGATEFTGYTTLKDTGKLLSAR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + G+ ++FD TPFY E+GGQ D G Sbjct: 475 DG---------------------KDGKK----------LMIFDTTPFYGESGGQAADIGI 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+G ++ DVQ K +GIF H V +G L +D NR + NH+ATHLL Sbjct: 504 ITGNGFEGKVIDVQ-KQKGIFTHTVEVLKGTPIEGEEYFLEVDEANRMATAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + + LRFD H + +T EL+ +E+ VN+ IA+ + V Sbjct: 563 HEALREVLGSHVQQAGSFVNGERLRFDFNHYEAMTGEELEKVEELVNEKIAEAINVSVAD 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A +GA AL G KY D VRVVSVE S LCGGTH+ + G+I L I SE Sbjct: 623 MSMDEAKKAGATALFGDKYGDVVRVVSVEGF-----SIELCGGTHIDNIGKIGLFKIESE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + I AGIRRIEA+TG+ A + + LK++ +K + N++ RVE++ E ++ Sbjct: 678 AGIAAGIRRIEAVTGKGAYKAVKNIEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKE 737 Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K ++ + I V + + +L+ ++D ++ K+ + +++L Sbjct: 738 LEELKSRFTQIEAQALAENSEVINGVTVIMKTFKTTTADDLRKMVDYVKDKMANTVVVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + KA VT++L + A +L + +A V+ GG GGGRP AQ+GG + K +A Sbjct: 798 SGA--DKAIFAAGVTKELTSKVKAGNLVKEAA-VITGGNGGGRPDFAQAGGKDATKIQEA 854 Query: 889 IAGVASFLK 897 + V LK Sbjct: 855 MNAVKETLK 863 >gi|309389100|gb|ADO76980.1| alanyl-tRNA synthetase [Halanaerobium praevalens DSM 2228] Length = 877 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 359/910 (39%), Positives = 537/910 (59%), Gaps = 50/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L+FF+ GH +L S+ LIP +DPTL++ N+GM PFK F G +P + Sbjct: 3 KSGDEIRQAYLDFFESKGHLILDSAPLIPKDDPTLLWINAGMAPFKPYFNGSLEPPKTRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +T QKC+R ND++NVG+T RHHT+FEMLGNFSFG YFKE AI AW+ +T+ +L+ Sbjct: 63 STSQKCIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEEAISWAWEFVTEVLELE 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+IT+Y+EDEEAF +W GL ++I+R+ +NFW + TGPCGPCSEI +D+G Sbjct: 119 EDRLWITIYEEDEEAFAIWHDKVGLDEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGP 177 Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 EG+RY+EIWNLVF Q+ E LP +IDTGMGLER+A++LQ Sbjct: 178 EAGESEEDVLGGEGDRYLEIWNLVFTQYNYTEAGEYQELPNKNIDTGMGLERVASILQAT 237 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL K LI +++G+ Y+ + ++RVI DH+RS+S I+DG LP+NEGRG Sbjct: 238 ETNFETDLIKPLIDQVVEMSGIDYQKDEQSLTSYRVIADHIRSASVAISDGALPSNEGRG 297 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV+RR++RRA Y R LG+ EP + L+ + + P+L + ++ ++SE++ F Sbjct: 298 YVIRRLIRRAARYGRKLGFKEPFLYQLVEKTAEIVAAVAPDLKKQLAHVKNVIKSEEKSF 357 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL +L+ +L++L E+++G AF+LYDT+G PLD+ +DI G+ +D Sbjct: 358 LQTLEQGLNILEDILNNLKAENKEVISGQDAFRLYDTYGFPLDLTEDIAAEEGIK-VDQK 416 Query: 417 SFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + +E QR RAR +G EKI+ +++ A F GY L+ Sbjct: 417 GFEKEMEAQRKRAREARAETSFNNGEIEKIYAEYQDQIEARNFTGYHSLQ---------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + +V+ + + +G K E++ +TPFYAE+GGQLGD G Sbjct: 467 -------------AKAQIVGLVKAEKAQKSLKAGDKAEIILTKTPFYAESGGQLGDKGVI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D ++ D KKAE +FVH V++G + + + + R + +HSATHLLH Sbjct: 514 KNDQFEAEVKDTVKKAE-VFVHQVEVKKGKIEVGEEVTAVVYHNRREATARHHSATHLLH 572 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q+GS + PD LRFD TH ++S EL+ +E VN I +N PV T I Sbjct: 573 KALKEVLGEHVNQSGSLVAPDRLRFDFTHFSALSSQELEELERKVNKAIRENYPVETEIK 632 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY VRVV + G S LCGGTHV +TG+I I++ES Sbjct: 633 AIDEAKDMGATALFGEKYGQEVRVVKM-----GDFSLELCGGTHVRATGDIGAFKIINES 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG+ A + + E L LA+ LK N++ RV+++ +E ++L+ Sbjct: 688 GIAAGVRRIEAVTGEYALDYFNSKLELLNQLAAELKTDPNNLLQRVKQVKKEQKELEKEL 747 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L ++A +N ++ + ++D+ L+++ D L+ KI SGII+L Sbjct: 748 ETMKEKLAGSKKDDLIDQLEEVAGINLLTAELEDLDNSALRNLTDQLKDKIDSGIIVLAS 807 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + V+EDL+ + F A ++ AK+ GGGG GGRP MAQ+GG A Sbjct: 808 -KGENKVIFVASVSEDLIAKGFKAGNIIAQVAKIAGGGG-GGRPDMAQAGGSKPENTSAA 865 Query: 889 IAGVASFLKK 898 +A V + +K+ Sbjct: 866 LAEVKNIIKE 875 >gi|118479549|ref|YP_896700.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|196034339|ref|ZP_03101748.1| alanyl-tRNA synthetase [Bacillus cereus W] gi|196044886|ref|ZP_03112120.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108] gi|218905583|ref|YP_002453417.1| alanyl-tRNA synthetase [Bacillus cereus AH820] gi|225866370|ref|YP_002751748.1| alanyl-tRNA synthetase [Bacillus cereus 03BB102] gi|205829983|sp|A0RJ00|SYA_BACAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118418774|gb|ABK87193.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|195992881|gb|EDX56840.1| alanyl-tRNA synthetase [Bacillus cereus W] gi|196024374|gb|EDX63047.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108] gi|218536398|gb|ACK88796.1| alanyl-tRNA synthetase [Bacillus cereus AH820] gi|225787137|gb|ACO27354.1| alanine--tRNA ligase [Bacillus cereus 03BB102] Length = 880 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|56421091|ref|YP_148409.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426] gi|81557818|sp|Q5KWU5|SYA_GEOKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56380933|dbj|BAD76841.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426] Length = 887 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 355/924 (38%), Positives = 519/924 (56%), Gaps = 67/924 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPEN 60 Query: 59 QAVT---------TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI Sbjct: 61 PRICIVPENPRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHW 116 Query: 110 AWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 AW+ LT K D RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E G Sbjct: 117 AWEFLTSDKWIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-G 173 Query: 168 PCGPCSEIFFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 P GP +EIF+D+GE E +RY+E+WNLVF QF LPK + Sbjct: 174 PSGPNTEIFYDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKN 233 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRS 281 IDTGMGLERM ++LQ+ N++ DLF +I+A+EQ+ G +Y + + V +VI DH+R+ Sbjct: 234 IDTGMGLERMCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRA 293 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ Sbjct: 294 VTFAIGDGALPSNEGRGYVLRRLLRRAVRYAKHIGIDRPFMYELVPVVGEIMHDYYPEVK 353 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399 + I +R+E+ERF +TL GL +L V+ + +++ G+ AF+LYDT+G P++ Sbjct: 354 EKADFIARVIRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIE 413 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D F + +E QR RARA + S + L + ++F+G Sbjct: 414 LTEEYAAEAGMT-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L +S V AIV+ G +VEE +G++ +++ D TP Sbjct: 471 YDEL-----------------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTP 507 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE+GGQ+ D G + + DVQK G +H IVERG ++ +D Sbjct: 508 FYAESGGQIADQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAK 567 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R ++ NH+ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE V Sbjct: 568 RMRIVKNHTATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIV 627 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I ++LPV E+A A GA AL G KY D VRVV V G +S LCGG HV Sbjct: 628 NEQIWKSLPVDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHV 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 +T I L IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R Sbjct: 683 PNTSAIGLFKIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNAR 742 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMD 814 ++ ++ E ++L+ + +L + + V ++ + D +L+++ D Sbjct: 743 LDGLFAELKELERENESLAARLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMAD 802 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 L++K+ + +I+L + K ++ VT+DL+ + F+A L + A GGGG GGRP Sbjct: 803 DLKQKLGTAVIVLASA-QGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGG-GGRPD 860 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 +AQ+GG + +K +A+ V +++K Sbjct: 861 LAQAGGKDPSKVGEALGYVETWVK 884 >gi|206889357|ref|YP_002248379.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741295|gb|ACI20352.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 875 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 362/908 (39%), Positives = 538/908 (59%), Gaps = 46/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL++F GHEL+ SS LIP +DP+L+FTN+GMV FK +F G+E+ Y Sbjct: 1 MQSSEIRKLFLDYFVSKGHELVKSSPLIPKDDPSLLFTNAGMVQFKRVFLGEEQRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKH+DL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 61 TTCQKCIRAGGKHSDLENVGFTARHHTFFEMLGNFSFGDYFKRDAILFAWELLTEHFKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++++Y +D+EA ++W++ G+ +++I+R+ DNFW M +TGPCGPCSEI DQGE Sbjct: 121 KEKLWVSIYKDDDEAAEIWEEEIGIPSERIVRLGEKDNFWQMGDTGPCGPCSEIIIDQGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E+WNLVFMQ+ + + + LPK SIDTGMGLER+ V Q Sbjct: 181 DFGCGQPDCSVGCDCDRFLELWNLVFMQYNRDEEGKLTPLPKPSIDTGMGLERITAVKQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K N+D DLF+ +I +KY + ++ +VI DH+R+++FL+A+G++P+NEGR Sbjct: 241 KRTNFDTDLFEPIISEICSTLNVKYGKDRKTDISIKVIADHIRAATFLVAEGLIPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA + +LL Y + + + ++G YPE++ + IE+ ++ E+ER Sbjct: 301 GYVLRRIIRRAGRHIKLLEYDKTAFYRFVEPVVYKLGEVYPEIVSERERIEKIIKIEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F ++L++ + D ++++L K + ++ G FKLYDT GLP D+++++ L ID Sbjct: 361 FLRSLEKAQQIFDDIINNLKKTDSKLIPGHEIFKLYDTFGLPFDLIKEMAQDSEL-QIDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 I F Q L +QR RARA G E ++ L+ + +FIGY Sbjct: 420 IGFQQELNKQRERARAAQKSEEVGIGE-VYKQLRPQSENLRFIGYTDYE----------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + AIV+ E V E ++ E+ +TPFYAE+GGQ+GDTG I Sbjct: 468 ------------TETDIYAIVKNSERVNELNKDEEGEIFLFKTPFYAESGGQVGDTGMII 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + ++ D KK G+ H V G ++ + ID + R+ + NH+ATHLLH Sbjct: 516 SNSGKAEVYDT-KKISGLHCHKVRVIEGTIKEGDKVFAKIDLERRKAIKRNHTATHLLHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL T+LG HV Q GS + PD LRFD TH + + EL+ IE VN+ I +NLPV I + Sbjct: 575 ALRTVLGEHVKQAGSLVAPDRLRFDFTHFEAVNDEELREIERIVNEKILENLPVKIEIKS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A+ G AL KY D VRVV + S LCGGTH STGEI YIVSE S Sbjct: 635 LDEALNEGVTALFEDKYEDTVRVVKIVG-----FSKELCGGTHCDSTGEIGSFYIVSEGS 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +GIRRIEA+TG A + E+LK+++S LK V VE + E ++ Q Sbjct: 690 VASGIRRIEAVTGIEAFKYSNINREQLKAISSILKS--AEPVKAVERLVAELKEKQQEIE 747 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L +++ +I V ++ + VD K L+++ D L++K+ II+L+ Sbjct: 748 VLKNKLISQNIEEIVKQAKEIDGVKALAVKLDGVDLKSLRTLSDKLKEKLHPAIILLIS- 806 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + +L+ VT+D+ ++++A L R + + GG GGGR AQ G P+G ++ Sbjct: 807 KADGQGILLLSVTKDITNKYDAGKLMRNIVQAV-GGKGGGRQETAQGGCPDGESLEKVSE 865 Query: 891 GVASFLKK 898 S ++K Sbjct: 866 IFYSLIEK 873 >gi|148270517|ref|YP_001244977.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1] gi|205830276|sp|A5IMH8|SYA_THEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|147736061|gb|ABQ47401.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1] Length = 863 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 356/902 (39%), Positives = 534/902 (59%), Gaps = 48/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V Sbjct: 4 MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + Sbjct: 63 ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + +L+++VY+EDEEAF++W + GL KI+R+ DNFW TGPCGP +EIF+D G Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C G + R++EIWNLVF ++ Q + + LP+ +IDTG GLER ++ Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q +N+D DLF+ +I E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+NE Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHMRAITFLISEGVFPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E+ Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVAEKMGKVYPEIVRGESMVKEVLSAEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF KTL++G+ + D ++ G+ ++ + AFKLYDT+GLPL++ +I +G +D+ Sbjct: 359 SRFLKTLEQGMKVFDEIVEKKGR---IDSEDAFKLYDTYGLPLELTLEIAREKG-VEVDV 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ +EEQ+ ++R G + K T+F GY+ L Sbjct: 415 KEFNKYMEEQQRKSRVAL-GDVEFARRYEYLEELPKDFRTEFTGYEKLED---------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V I + + VE+A VEVVF +TPFYAE GGQ+ DTG Sbjct: 464 -------------EGEVVLIAKNEKAVEDATE-DAVEVVFSKTPFYAEKGGQVSDTGTVE 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + + V + +EG+ VH V G LR +VL +D + R NH+ATHLLH Sbjct: 510 WEDGKALVEYVFEASEGVIVHRIKVLAGTLRRGQKVVLRVDKKRREATMRNHTATHLLHA 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD LRFD TH K ++ AE++ +E+ VN+ I + +PV R + Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSMAEIEQVENLVNEWIMEAIPVEVRYTS 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A+ SG AL KY D V + S LCGGTHVS+TG+I L I+SE S Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVSNTGQIGLFKIISEES 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TG L Q + + L L + + RV + E+ ++L+ + Sbjct: 685 VSSGVRRIEAVTGFSTLELLRNQKKLIDQLKEILGAREDELTDRVLGLREKVKELEKKLS 744 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + ++ + + + +V++K L + D + KK + GI++L+ E K Sbjct: 745 QGRISEEKIAMKQLE-DGARVFYAVFEDVEAKHLGGIADNVLKKEREGIVILLS-KFEDK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+++ V+E+LLD+++A +AR AK L GG GGGR + AQ+GG + K + + F Sbjct: 803 VSLVVKVSENLLDKYDASSIARNIAKEL-GGSGGGRRNFAQAGGRHPEKIRGVLERLEEF 861 Query: 896 LK 897 L+ Sbjct: 862 LR 863 >gi|301055897|ref|YP_003794108.1| alanyl-tRNA synthetase [Bacillus anthracis CI] gi|300378066|gb|ADK06970.1| alanyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI] Length = 880 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G+L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGMLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229105022|ref|ZP_04235676.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28] gi|228678399|gb|EEL32622.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28] Length = 880 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYCNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHKGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S + A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 NVEISQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++LV + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLVSV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|313680711|ref|YP_004058450.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977] gi|313153426|gb|ADR37277.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977] Length = 895 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 338/926 (36%), Positives = 507/926 (54%), Gaps = 70/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--P--- 56 + IR +L FF++ GH LP SLIP +DPTL+F +GM P K F G + P Sbjct: 1 MTTAEIREKYLRFFEEKGHLRLPPFSLIPEDDPTLLFIVAGMAPLKPYFMGAKPVFPGHE 60 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 ++ V T QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK+ AI AW+ +T Sbjct: 61 GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAIAWAWEFVT 116 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168 K LD RLY+TVY +D+EA+ +W+ + G+ ++I R ++NFW S GP Sbjct: 117 DPKWLGLDPDRLYVTVYKDDDEAYAIWRDVVGVPEERISRWDEDENFWPAGAISEGPNGP 176 Query: 169 CGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNK----QERFILPKM 222 CGPCSEIF+D+G G+R++EIWNLVF QF + LP+ Sbjct: 177 CGPCSEIFYDRGPGFGSPDETGPNTGSGDRFVEIWNLVFTQFNRSGPIPGEGVLEPLPQK 236 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282 +IDTGMGL R+A +LQ+ + Y D FK LI + +G+ Y+G V+HRVI DH+R+ Sbjct: 237 NIDTGMGLYRVAAILQDVEDFYATDTFKPLIDLVAERSGVPYKGALSVSHRVIADHVRAV 296 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 ++DG +N GRGYV+RR++RRA+ + LLG EP + L P + +G YPE+ + Sbjct: 297 VAALSDGATFSNTGRGYVIRRLLRRAVRHGYLLGIKEPFLHELAPVVAELLGDYYPEMKE 356 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 ++ +R+E+ RF +TL++G+ L+ +L+ L + ++L G+ AF+L+DT+G PLD+ + Sbjct: 357 QLASVQPAIRAEEARFLETLEQGIRRLESLLAGLKEGDVLPGEEAFRLHDTYGFPLDLTE 416 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGY 460 +I RG+ +D F +A+ EQ RARA S G + E +GAT+F GY Sbjct: 417 EIAAERGVK-VDREGFERAMREQVERARAASAFSGDVFAAAAPALERVFEDHGATEFTGY 475 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + L V I+Q ++ +GQ +VV D+TPF Sbjct: 476 ERLED-----------------------EGKVLLILQGEAELDRLEAGQGGQVVLDRTPF 512 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE GGQ+GD+G G R ++ +K +G+ +H VE G L ++ +D + R Sbjct: 513 YAEGGGQVGDSGYLEWPGGRARVVTTKKSKQGLHLHEVEVEEGALAVGAAVRAVVDPERR 572 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 NH+ATHLLH AL +LG V Q GS + PD LRFD TH+ ++ E++ +E VN Sbjct: 573 -CTEKNHTATHLLHAALRAVLGPQVRQAGSLVAPDRLRFDFTHAAALSPEEVRKVELLVN 631 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSAL 693 + + PV M E+A +GA AL G KY D VRVV VE + V S L Sbjct: 632 RWVQADFPVSWTFMPLEEAKKAGAMALFGEKYADTVRVVKVEGSPDTAGILEAEVRSMEL 691 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGG HV TGEI I +E ++ AG+RRIEA+TG+ A + ++ +LA L S Sbjct: 692 CGGCHVRRTGEIGYFVITAEEAVSAGVRRIEALTGEAAVRYARDLLDRDAALARALGTSL 751 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSK 807 + R+E++ +E ++L+ + K L L + + +++ + +D Sbjct: 752 EGLPQRIEKLQQELKQLRRENEKLAADLARAQLGGGGAPAVREAGGWRYVAAAFAGLDVP 811 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866 L+ V D + ++ ++++ ++++ V+ D + R A + R A+ GG Sbjct: 812 SLRQVADEILERYGVDLVVVGA-----GGALIVKVSPDAVQRGLAAGQVIRALAER-TGG 865 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGV 892 GGG+PH+AQ GG + KA A+ V Sbjct: 866 RGGGKPHLAQGGGFDVEKALAALDEV 891 >gi|49481702|ref|YP_038439.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|59798537|sp|Q6HDD7|SYA_BACHK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49333258|gb|AAT63904.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 880 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ + TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLNVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRGSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|228948102|ref|ZP_04110386.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123929|ref|ZP_04253121.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201] gi|228659231|gb|EEL14879.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201] gi|228811460|gb|EEM57797.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 880 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADCGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|296327899|ref|ZP_06870435.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155033|gb|EFG95814.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 867 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 328/908 (36%), Positives = 504/908 (55%), Gaps = 58/908 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAEKIWVEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FL+ DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGYT+ M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLINGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEKTEDEGKLLSLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + K ++FD+TPFY E+GGQ+GD G Sbjct: 475 EAKDR-------------------------------KYLLIFDKTPFYGESGGQIGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DV +K + IF+H E+GI + L +D R + NH+ATHLL Sbjct: 504 IYSDNFEAKVLDV-QKQKDIFIHTVKFEKGIPEENKTYKLEVDVIKRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV Q GS + + LRFD +H + +T +L IED VN I + + VV Sbjct: 563 HKALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I SE Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + + LK++ LK + N+V +VE+ E + + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADILKNIEKKLKATNSNLVEKVEKNLETLKDTEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I V + + +++L++++D ++ + I++L Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIVVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854 Query: 889 IAGVASFL 896 V + Sbjct: 855 FKEVREII 862 >gi|294628346|ref|ZP_06706906.1| alanyl-tRNA synthetase [Streptomyces sp. e14] gi|292831679|gb|EFF90028.1| alanyl-tRNA synthetase [Streptomyces sp. e14] Length = 890 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 340/924 (36%), Positives = 514/924 (55%), Gaps = 64/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY +D+EA ++W ++ G+ ++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLDPERLWITVYKDDDEAEQIWHEVVGVPKERIQRLGMKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ N + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTGKDNFEILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I+ + ++TG+ Y + V+ RV+ DH+R+++ LI D Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHASDVSLRVVTDHMRTATMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVRDLIDVVVNMMGQQYPELVTDRERIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F KTL G +LD ++ + ++L+GD AF L+DT G P+D+ ++ Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVTETKQSGGKVLSGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + G T FIGY G Sbjct: 415 EQGLS-VDEEGFRRLMKEQRERAKADAQAKKTGHADLGAYREIADTAGETDFIGYTDTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTIVGLLVDGVSSPAATEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + G ++I D QK G++VH +V+ G + +ID + R+ ++ Sbjct: 511 GQIGDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRKAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVHAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + + K + + ++ + DV ++ + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVALVTGQVPDGTTPDDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 +IQ G ++ L + K +I E +R A DL R +AK LGGGG GG+P + Sbjct: 806 RIQGGRAAVVALFTV-NNGKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ GG N +A+ V + + Sbjct: 864 AQGGGQNPAAVGEAVDAVERLVAE 887 >gi|52141119|ref|YP_085711.1| alanyl-tRNA synthetase [Bacillus cereus E33L] gi|196039230|ref|ZP_03106536.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99] gi|206976027|ref|ZP_03236937.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217961878|ref|YP_002340448.1| alanyl-tRNA synthetase [Bacillus cereus AH187] gi|222097831|ref|YP_002531888.1| alanyl-tRNA synthetase [Bacillus cereus Q1] gi|228917022|ref|ZP_04080582.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935709|ref|ZP_04098522.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229141125|ref|ZP_04269667.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26] gi|229198515|ref|ZP_04325219.1| Alanyl-tRNA synthetase [Bacillus cereus m1293] gi|59798503|sp|Q634F6|SYA_BACCZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51974588|gb|AAU16138.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus E33L] gi|196029857|gb|EDX68458.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99] gi|206745779|gb|EDZ57176.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217067465|gb|ACJ81715.1| alanyl-tRNA synthetase [Bacillus cereus AH187] gi|221241889|gb|ACM14599.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1] gi|228585018|gb|EEK43132.1| Alanyl-tRNA synthetase [Bacillus cereus m1293] gi|228642403|gb|EEK98692.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26] gi|228823947|gb|EEM69766.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842629|gb|EEM87717.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 880 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|228929433|ref|ZP_04092454.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830221|gb|EEM75837.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 880 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ +++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNRLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|228987640|ref|ZP_04147754.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772100|gb|EEM20552.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 880 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+ + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQTDELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|210615765|ref|ZP_03290746.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787] gi|210150101|gb|EEA81110.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787] Length = 885 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 353/907 (38%), Positives = 515/907 (56%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL FF+ H ++ S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 12 VNELRKMFLNFFESKEHLVMKSFSLVPNNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 71 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 72 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLDPD 127 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G++ ++I + DNFW +GPCGPCSEI++D+GE Sbjct: 128 RLYPSVYVDDQEAFDIWNKEMGIAPERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 186 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 187 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYEELEQKNIDTGMGLERLASVVQDVD 246 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L + ++Y + + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 247 SIFDVDTIKALRDKVCEFASVEYKADADKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 306 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I + L E+++F Sbjct: 307 VLRRLIRRAARHGRLLGIDGKFLAKLSATVIEGSKDGYPELEEKKEFIFKVLTQEEDKFN 366 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + +L+G AFKLYDT+G PLD+ ++IL G ID Sbjct: 367 KTIDQGLSILASMQDEMKEAGKTVLSGADAFKLYDTYGFPLDLTKEILEEAGYT-IDEEG 425 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F ++EEQR +AR + + E ++F+GYD L Sbjct: 426 FKASMEEQRVKARNAREVTNYMGADATVYDEIEASVTSEFVGYDRLTH------------ 473 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +S + + + EIVE GQ + D+TPFYA GGQ GDTG + Sbjct: 474 -----------TSKISVLTTESEIVEAITEGQNGTIFVDETPFYATMGGQEGDTGIICTE 522 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +++ K G H V +G+ + S+ L + + R NHSATHLL AL Sbjct: 523 DAEFTVSNTIKLLGGKIGHVGNVTKGMFKVGDSVTLEVAEKERANTCKNHSATHLLQKAL 582 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LGSHV Q GS +TPD LRFD H +T EL+ +E+ VN IA+N+PVVT +MN E Sbjct: 583 KTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTPEELEKVENIVNTEIAKNVPVVTEVMNIE 642 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A+GA AL G KY + VRVVS+ G S LCGGTHVS+TG I IVSE+ + Sbjct: 643 QAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVSNTGNITTFKIVSEAGVA 697 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG + +++L A K + N+ ++E + E + LQ Sbjct: 698 AGVRRIEALTGDGVFCYYKEVEKELAEAAKAAKSTPANLKEKIEHMQAEMKALQSEIESL 757 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K + + L ++ V ++ + +VD L+ + D L++K+ G++++ + Sbjct: 758 KSKAAKDALGDVMNQVKEVNGVRLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVIASSAS 817 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K +++ + T++ +++ +A +L + A ++GGGG GGRP+MAQ+GG N AIA Sbjct: 818 -GKVNLIAMATDEAMEKGAHAGNLIKGIAALVGGGG-GGRPNMAQAGGKNPAGIPDAIAK 875 Query: 892 VASFLKK 898 A L + Sbjct: 876 AAEVLAE 882 >gi|47566576|ref|ZP_00237398.1| alanyl-tRNA synthetase [Bacillus cereus G9241] gi|47556606|gb|EAL14938.1| alanyl-tRNA synthetase [Bacillus cereus G9241] Length = 880 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + ++K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDEKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|228923140|ref|ZP_04086431.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836519|gb|EEM81869.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 880 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+ + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLIGQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|289523056|ref|ZP_06439910.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503599|gb|EFD24763.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 880 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 342/908 (37%), Positives = 526/908 (57%), Gaps = 48/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL +F++ H+ PS SLIP +DPTL+FT +GMVPFK F G +KP T Sbjct: 5 SGKELRELFLSYFEQKEHKRFPSFSLIP-DDPTLLFTIAGMVPFKPYFLGLKKPEVLRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT+RHHTFFEMLGNFSFG YFKERAI AW+ LTK LD Sbjct: 64 TSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKERAIPWAWEFLTKVIGLDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+Y T+Y +D+EAF++W K+ GL KI+R+ DNFW+ GPCGPCSE+ +DQG Sbjct: 120 ERMYATIYLDDDEAFEIWNKVVGLPESKIVRMGEKDNFWAAGPIGPCGPCSELIYDQGPA 179 Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P + +RY+E+WNLVFMQ+ + + LPK +IDTGMGLER+A+++Q Sbjct: 180 FSCGKPDCFVGCDCDRYLEVWNLVFMQYNRDEEGNLTPLPKKNIDTGMGLERLASIVQGA 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++++ DLF LI+ +++G++Y + RVI DHLR+ +F+IADG+LP+NEGRG Sbjct: 240 RSDFETDLFLPLIEKVSRLSGVEYAADKRFDTAMRVIADHLRALAFMIADGVLPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA Y R+LG P ++ L+P L M Y EL++ + IE + E++RF Sbjct: 300 YVLRRLLRRASRYGRVLGLDRPFLIELMPELLEIMADHYKELVEYRSTIESVINLEEKRF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TLD+G LL+ +S + + +L+G+ AF LYDT+G PL++ ++I +G +D Sbjct: 360 SRTLDQGSALLEEEISRVIRSGSSVLSGETAFTLYDTYGFPLELTEEICQEQG-IEVDRE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + +E QR AR S L S +++ +L K+G T+F+GY+ Sbjct: 419 EFERCMERQREMARTASKQLASMAKKEVHSTLLAKFGPTKFVGYE--------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++ S V AI++ VEEA G++VE++ +TPFYAE GGQ+GD G Sbjct: 464 --------SDEAESKVLAILKDSREVEEAHEGEEVEILLAETPFYAEKGGQVGDKGWIET 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +L++ D + + H V+ G + + +D R + +H++TH++H A Sbjct: 516 STGKLEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDLSRRNAIRRHHTSTHIIHEA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L+ +LG H+ Q GS ++P+ LRFD TH I+ ++ IE N++I N+ + + Sbjct: 576 LTRVLGPHIRQAGSYVSPNYLRFDFTHFDAISRDDIVKIEQIANEVIQANIKLNIFETSM 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A GA A KY DRVRV+ + + + LCGG HV++TG+I L IV E SI Sbjct: 636 EEAKKIGAKAFFDEKYGDRVRVIQIPG-----YCAELCGGLHVNATGDIGLTKIVKEESI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRI A+ G A SH + ++ L V G++ + ++++E + L+ + Sbjct: 691 GSGLRRITALAGMAAVSHYQELFDLVEDLTLISGVEAGSLKEKFTDVFQEIKNLKTELQR 750 Query: 777 RKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L+L + + ++ ++D+ L+ V D L+K ++ +++L S Sbjct: 751 SNLKLALSQCDKILSQRQIVNGFTLLTGKFEDLDADILRQVGDHLKKGLKKVLLVLGS-S 809 Query: 832 KEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E K ++ + ED + D +A AK++ GGGGGRP++AQ+GG K + A+ Sbjct: 810 FEGKVVLVAMADEDAVRDGIHAGKFINRVAKIV-DGGGGGRPNVAQAGGKKVEKLEDALN 868 Query: 891 GVASFLKK 898 V L + Sbjct: 869 AVPRILTE 876 >gi|229098860|ref|ZP_04229796.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29] gi|229117885|ref|ZP_04247247.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3] gi|228665542|gb|EEL21022.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3] gi|228684533|gb|EEL38475.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29] Length = 880 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHKGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S + A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 NVEISQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++LV + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLVSV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|300119209|ref|ZP_07056906.1| alanyl-tRNA synthetase [Bacillus cereus SJ1] gi|298723429|gb|EFI64174.1| alanyl-tRNA synthetase [Bacillus cereus SJ1] Length = 880 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHLGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYIK 876 >gi|295695750|ref|YP_003588988.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912] gi|295411352|gb|ADG05844.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912] Length = 878 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 346/907 (38%), Positives = 520/907 (57%), Gaps = 52/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FLEFF H++ PS+SL+P +DP+L++ N+GM P K F G++ P + Sbjct: 1 MKGAEIRKKFLEFFASKDHDVYPSASLVPVDDPSLLWINAGMAPLKPFFDGRKVPPNPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+R ND++NVG+T RH TFFEMLGNFS G YFK+ AI AW+ LT+ LD Sbjct: 61 ASSQKCIRT----NDIENVGKTARHQTFFEMLGNFSIGDYFKKEAIDWAWEFLTEHMGLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL +T++ ED+EA++LW + G+ A +I R+ DNFW + E GP GPCSEIF+D+GE Sbjct: 117 PERLSVTIHPEDDEAYELWHRRIGVPAHRIFRM--EDNFWEIGE-GPSGPCSEIFYDRGE 173 Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + E +R++EIWNLVF QF LPK +IDTGMGLERMA+V+Q+ Sbjct: 174 NRGCGRPECNVGCECDRFLEIWNLVFTQFNHNPDGTYTPLPKKNIDTGMGLERMASVMQD 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +N+D DLF+ +I+A+ + G++Y E V +VI DH+R++ F + DG+LP NEGR Sbjct: 234 VDSNFDTDLFRPIIEAAAEAAGVQYGQEKQWDVALKVIADHIRTAVFAVGDGVLPGNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 Y++RR++RRA+ Y R LG+ P + L+P + MG AYPE+++ I +++E+ER Sbjct: 294 SYIIRRLLRRAVRYGRNLGFDRPFLYRLVPVVGEVMGEAYPEIVEKGDFIVRAVKAEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL G +L+ + L L G+ AF+LYDT G P+D+ ++I +G +D Sbjct: 354 FLETLAEGEQVLEDYIEKLRSAGRTTLAGEDAFRLYDTFGFPIDLTKEIASEQG-IDVDE 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F QALE QR RARA + S +++ L + ++F+GY++L Sbjct: 413 EGFAQALEAQRERARAARQDVESMQSKRGV--LVDLEAPSRFVGYEVLE----------- 459 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V+ +V +VE G + +V ++TPFYAE+GGQ+ D G Sbjct: 460 ------------TQSRVEVLVVDDRVVERVSEGDQCLIVLNETPFYAESGGQVADRGTIE 507 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 RL++ DVQK G VH V RG + + +D + R + NH+ATHLLH Sbjct: 508 TATARLEVEDVQKAPRGQHVHRCRVVRGTVTAGEVVRARVDRRYREDIIKNHTATHLLHK 567 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS + LRFD +H P+ EL+++E VN+ I +N PV R M Sbjct: 568 ALREVLGEHVAQAGSLVADSRLRFDFSHYGPLAPEELEAVERVVNEEIWRNEPVDIREMP 627 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY +RVRVV G S LCGG HV T EI + IVSE+ Sbjct: 628 LDEAKAMGAMALFGEKYGERVRVVK-----AGDFSIELCGGCHVRRTSEIGVFKIVSETG 682 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEA+TG+ A + L + + L AS L+V+ +V ++E++ + ++ + Sbjct: 683 IGSGVRRIEAVTGRHAYAFLDSRLKGLDRAASLLRVAPADVPDKLEQVLGDMKETERELE 742 Query: 776 K-----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + Q I V ++ ++ +++ ++D L + I SG+++L G Sbjct: 743 SWRDRWIRGQALRLADRVTDIQGVPVVAEVVEGATPDQMRRMVDVLWETIHSGVVVL-GS 801 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +E K + V+ D + +A L + A GGGG GG+P +AQ+GG + K +A+ Sbjct: 802 KQEDKVMFVAAVSPDWVAKGLHAGQLVKEVAAAAGGGG-GGKPDLAQAGGRHPEKLAEAL 860 Query: 890 AGVASFL 896 + V ++ Sbjct: 861 SRVPGWV 867 >gi|288555383|ref|YP_003427318.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4] gi|288546543|gb|ADC50426.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4] Length = 879 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 351/912 (38%), Positives = 523/912 (57%), Gaps = 57/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R +L+FF++ GH++ PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 5 TSAQVRQMYLDFFKEKGHDIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 65 NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGF 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +L +TV+ ED EA+ W K G+ ++IIR+ NFW + E GP GP +EIF+D+G Sbjct: 121 DPEKLSVTVHPEDNEAYDYWAKNIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177 Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E ERY+E+WNLVF QF LPK +IDTGMGLERM +V Sbjct: 178 PSYGDDANDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ N++ DLF +IQA+EQ+T +KY + V +VI DH+R+ +F + DG LP+N Sbjct: 238 IQDTKTNFETDLFMPIIQATEQLTSVKYGADTETDVAFKVIADHVRTVTFAVGDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+L+G P M L+P + M YPE+ + I++ +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKLIGIDRPFMYELVPVVGEIMVDFYPEVKEKTEFIQKVMKTE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL+ GL +LD +L+ +E+++G F+LYDT+G P+D+ ++ + +GL Sbjct: 358 EERFHETLNEGLGILDKILAEAKGKNEEVISGSDVFRLYDTYGFPVDLTEEYVEEKGLT- 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +E+QRSRARA GS + L E + F+GY+ L Sbjct: 417 IDRDGFEVEMEQQRSRARAARQESGSMQVQDEL--LGEINAESTFVGYNQL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V ++ E + +G+ +V+ TPFYAE+GGQ+ DTG Sbjct: 466 --------------SAEGTVSVLIAGKERMSSVPAGETAQVILSTTPFYAESGGQVADTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+G+ ++T+V K G +H +VE G L+ +++ T++ +R + NH+ATHL Sbjct: 512 TIVGEGVIARVTEVTKAPNGQHLHTVVVEEGELKEGVTVTSTVEETSRIGIVKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS ++ D LRFD +H +T EL IE+ VN+ + + V Sbjct: 572 LHQALKDVLGVHVNQAGSLVSEDRLRFDFSHFGQVTKEELTKIEEIVNEKVWNAISVDIS 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +A GA AL G KY D VRVV V G +S LCGG HV +T EI L +VS Sbjct: 632 EKKLAEAKEMGAMALFGEKYGDTVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKVVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771 ES I AG+RRIEA+TGQ A + Q L + + +K +V R+E + ++ R LQ Sbjct: 687 ESGIGAGVRRIEAVTGQGAYEFMNDQLRLLTTASELVKAKNVKDVPARIEAMQQQIRDLQ 746 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L + ++ V +S ++ D L++++D L++ + SG+I+ Sbjct: 747 RENESLSSKLGNMEAGNLIDEAVEVNGVKVLSKEVNASDMDGLRAIVDKLKQDLDSGVIV 806 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L +S E K +++ VT+DL+ +A L + A GGGG GGRP MAQ+GG + Sbjct: 807 LGAVSGE-KVNLVAGVTKDLISQGHHAGKLVKEVASRCGGGG-GGRPDMAQAGGKKPEQL 864 Query: 886 DQAIAGVASFLK 897 +A+A V F+K Sbjct: 865 AEALAYVPEFVK 876 >gi|15893250|ref|NP_360964.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7] gi|20532256|sp|Q92G00|SYA_RICCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15620469|gb|AAL03865.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7] Length = 878 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 407/901 (45%), Positives = 562/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL R +D F + Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q++RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 424 MLMQKARARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I +H I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+ Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + + +D LKS+ S K ++ ++ +V I E ++++ K Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 756 SLDLSIEQIEKQSAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|327398418|ref|YP_004339287.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411] gi|327181047|gb|AEA33228.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411] Length = 860 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 357/900 (39%), Positives = 528/900 (58%), Gaps = 45/900 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FLE+F++NGH ++ S+ L+P NDPTL+F N+GMV FKN+F G+EK Y Sbjct: 1 MKSSDLRKAFLEYFKENGHTIVKSAPLVPKNDPTLLFVNAGMVQFKNVFLGKEKRDYARA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI WD +T+ +D Sbjct: 61 TSCQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFGWDFVTRVLGID 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+IT++ +D+EAF++W K G+ + +I+R+ +DNFW+M +TGPCGPCSEI DQG Sbjct: 121 KDKLWITIFKDDDEAFEIWNKQEGVPSSRIVRMDEHDNFWAMGDTGPCGPCSEIHIDQGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + + +RY+E+WNLVFMQ+ + LPK SIDTGMGLER++ +LQ Sbjct: 181 DVGCGKPNCSVACDCDRYLELWNLVFMQYNRDEDGNMTPLPKPSIDTGMGLERVSAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297 +N+DID+F+H+I + + Y ++ + RVI DHLR+ FLIADG+ P EGR Sbjct: 241 VHSNFDIDIFRHIIGNISEFFRIDYGKDSNRDVGVRVIADHLRAMDFLIADGVFPDKEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRAM + + LG EP + + + MG YPEL+Q K ++ +++E+E+ Sbjct: 301 GYVLRRIMRRAMRFGKKLGANEPFLYRFIDTVNDVMGDVYPELLQNKEMVVNVVKAEEEQ 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TLD GL +L+ + +++ + AFKLYDT+G P+D+ DI G +D+ Sbjct: 361 FFETLDSGLRILNDIFDKAT-KRVVDAESAFKLYDTYGFPIDLTVDIAKENGFE-VDVKD 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN+ LE+QR +R G G + + ++ G T+F+GYD Sbjct: 419 FNELLEKQREASRKSWKGSGDEFVWDAFGDIYKQKGKTEFVGYDEFE------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + IV + + ++E +FD+TPFYAE+GGQ+ DTG + Sbjct: 466 ----------TKARLLGIVGKDKKIKEQAQRGVYYFIFDKTPFYAESGGQVADTGFILKG 515 Query: 538 GIRLQITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 R ++DV+K + +FVH V G L I+ R+ ++ +H+ATHLL A Sbjct: 516 NARAFVSDVKKYFDGNLFVHKVDVLEGEFELNDECDLRINVARRKNIARHHTATHLLDAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + + LRFD TH +T +++ IE+ +N I +N PV T M+ Sbjct: 576 LIKILGKHVRQAGSLVEDNRLRFDFTHFSKLTDEQIEEIEELINSWIVENYPVKTETMSL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DAI SGA AL KY+D VRVVSV G S LCGGTHV ++GEI L ++ ES++ Sbjct: 636 DDAINSGAIALFDEKYSDEVRVVSV-----GNISKELCGGTHVKASGEIGLFKVIHESAV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 GIRRIEA G A ++ ++ LK AS L + + + Sbjct: 691 AKGIRRIEAKVGVEAYEYVKQIEKVLKDAASKLGIPITELPL--------KIEELKKKKT 742 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 K Q + K+ ++ + D EL+ + D ++ K++S I++L K+ + Sbjct: 743 LKSQPKFDPSKVVKVNGIDVYVDVFENEDVSELRHLGDTVKSKLKSCIVVLF-DKKDDRV 801 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +V+++VT+DL +R A D+ ++ LGG G GG+ AQ GG + ++ ++ I + SFL Sbjct: 802 NVIVMVTKDLANRIKAKDVVGKISRALGGKG-GGKEEFAQGGGRDLDRLEEIIRSINSFL 860 >gi|34581082|ref|ZP_00142562.1| alanyl-tRNA synthetase [Rickettsia sibirica 246] gi|28262467|gb|EAA25971.1| alanyl-tRNA synthetase [Rickettsia sibirica 246] Length = 878 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 407/901 (45%), Positives = 562/901 (62%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEVRSKFITYFKANNHIHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WK+I+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAAAYWKQIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL R +D F + Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE++G+T+F+GY L Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I +H I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+ Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + + +D LKS+ S K ++ ++ +V I E ++++ K Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|123967582|ref|YP_001008440.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601] gi|205830182|sp|A2BNH2|SYA_PROMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123197692|gb|ABM69333.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601] Length = 886 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 313/908 (34%), Positives = 497/908 (54%), Gaps = 52/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G ++ + T Sbjct: 11 TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+T + L Sbjct: 70 SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V+ EDEE+ K+W G+ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 126 ENIIVSVFHEDEESAKIWSDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+K N Sbjct: 186 -KGLQNIDLEDGDRFIEFYNLVFMQYNRDPNGKLTDLKFKNIDTGMGLERMAQILQKKQN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ ++ + Y ++ N ++I DH R+ LI+DG+ +N GRGY Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVSASNLGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG T + H+ M + YP+L LI ++ E+ RF Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LLD ++S ++++G AF+LYDT+G PL++ +I +D+ F Sbjct: 365 ETLERGEKLLDELISS--GQKLISGFKAFELYDTYGFPLELTVEIAEEHS-ISVDVKGFE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + Q+ RA+A S + + + + + T F GY L Sbjct: 422 EEMNVQKERAKAASSNIDLTLEGSLEREI-DVFNKTVFNGYKSLLS-------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + +K I +V+EA GQKV +V DQT FY E+GGQ+GD G + + Sbjct: 467 ---------EAEIKGIFLDSTLVKEASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSNDV 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D + + +F+H+ +++G L + + NR + + NH+ATHLL AL + Sbjct: 518 EVLV-DNVMRKKNVFLHYGTIKKGKLTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKS 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ V Q GS + + LRFD S PI+ ++ IE VN I +N + + M++ +A Sbjct: 577 VINESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHSLEIKNMSKSEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA A+ G KY+D VRVV+V S LCGGTHV +T E+ I+SE I AG Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA++GQ A + ++ + L+ LK + + RV + E K K Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAELINKNKEIQKMKD 751 Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831 ++ S + + + + I +D L+S L + + I+++G Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + +K ++ + +D + +A L A++ GG GGG+P+ AQ+G + +K A+ Sbjct: 812 ENRKLLFVVSLGDDAVKIGLHAGKLINEIARICSGG-GGGKPNFAQAGAKDIDKLSDALD 870 Query: 891 GVASFLKK 898 ++L+K Sbjct: 871 YAKNYLQK 878 >gi|51474024|ref|YP_067781.1| alanyl-tRNA synthetase [Rickettsia typhi str. Wilmington] gi|59798518|sp|Q68VQ7|SYA_RICTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51460336|gb|AAU04299.1| Alanine translase [Rickettsia typhi str. Wilmington] Length = 877 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 411/901 (45%), Positives = 557/901 (61%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI WDLLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T+Y D+ A W+KISGL D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYVTIYHTDDTAASYWEKISGLRDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEE 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+ +R+IEIWN+VFMQ+EQ NK+ R LPK SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K +G ++RVI DHLR+SSFLIADGI+P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRAM +A +LG EPLM LLP L MG+ YPEL A+ I L E+ RF T Sbjct: 305 RRIMRRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAEGFISSILEQEEIRFKTT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL R +D F + Sbjct: 365 LERGLKLLTEETKTLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEL 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T+++WF +KE+YG+T+F+GY L Sbjct: 424 MLIQKERARTSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ + + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAKCKIIALIKNNNLADTIQEVDTQFLLIANQTPFYGESGGQMGDIGMIFSQDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + ID + R+ L I+HSATH+LH L I Sbjct: 521 VEVIDTLKYLRSIIVHKCILKKGKINIGENANFNIDIKYRKNLRIHHSATHILHAVLHKI 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS +T LRFD+ HSK IT+ E+ IED VN+II N V T +M EDAI Sbjct: 581 LGKQVIQKGSLVTSTYLRFDINHSKAITNEEITLIEDKVNEIIRNNHEVNTTVMFTEDAI 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LC GTHV TG+I I+SESSI AG+ Sbjct: 641 KQGAIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGAFKIISESSIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + +D +K + S +K ++ ++ +V I E ++L+ K Sbjct: 696 RRIEAVCGEFVIKLIREKDNLIKLIESSVKTNKNELITKVTNILERNKELEKELEKAHLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + +IA + + + +++K L+ + L +K+++ I++ + K Sbjct: 756 GLDLSIEQIKKQAEQIAGIKLLYKKVGNINNKILRQAAENLTQKLENLIVVYIAHGV-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D+FNA +A+ + LGG GGGG+ +AQSGG + + S Sbjct: 815 LSITVAVSKAITDKFNAGIIAKELSLFLGGSGGGGKASIAQSGGNDIVNLTNINKKLLSL 874 Query: 896 L 896 + Sbjct: 875 I 875 >gi|157829157|ref|YP_001495399.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933886|ref|YP_001650675.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa] gi|205830193|sp|B0BVK9|SYA_RICRO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830194|sp|A8GU16|SYA_RICRS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157801638|gb|ABV76891.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908973|gb|ABY73269.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa] Length = 877 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 407/901 (45%), Positives = 558/901 (61%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y Sbjct: 5 TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL R +D F + Sbjct: 365 LERGLKLLTEETETLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ AR LG G T ++WF +KE++G+T+F+GY L Sbjct: 424 MLMQKELARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTISAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+ Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA+ G+ + + D LKS+ S K ++ ++ +V I E ++++ K Sbjct: 696 RRIEAVCGEFVITLMRENDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|226323189|ref|ZP_03798707.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758] gi|225208379|gb|EEG90733.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758] Length = 855 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 338/888 (38%), Positives = 502/888 (56%), Gaps = 48/888 (5%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R G D++NVG+ Sbjct: 1 MKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIRTG----DIENVGK 56 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142 T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +VY++D+EA+K+W + Sbjct: 57 TARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSVYEDDDEAWKIWNE 116 Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGERYIEI 200 G++ ++I R DNFW +GPCGPCSEI++D+GE G PG E +RY+EI Sbjct: 117 EIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPGCTVGCECDRYMEI 175 Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260 WN VF QF+ L + +IDTGMGLER+A ++Q+ + +DID K L ++ Sbjct: 176 WNNVFSQFDNDGHGNYSELKQKNIDTGMGLERLACIVQDVDSMFDIDTLKALRDQVCEIA 235 Query: 261 GMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318 G+ Y N V+ RVI DH+RS SF+I+DGI+P+NEGRGYVLRR++RRA + RLL Sbjct: 236 GVSYGDNESTDVSLRVITDHVRSVSFMISDGIMPSNEGRGYVLRRLLRRACRHGRLLNIA 295 Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378 + L + YPEL + K I +R E+E+F KT+D+GLV+L+ + + + Sbjct: 296 PGFLTDLAATVIEGSKDGYPELEEKKDFIMNVIRKEEEQFEKTIDQGLVILNEMKEKMAE 355 Query: 379 D--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436 + + L+G+ AFKLYDT+G P+D+ ++IL ID F A+E QR AR Sbjct: 356 EGTKTLSGEDAFKLYDTYGFPIDLTKEILE-EEGIDIDEEGFKAAMEVQRQTARKARKAT 414 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 + + + ++F+GY+ L S + + Sbjct: 415 NYMGADATVYESIDPSVTSKFVGYEHLEY-----------------------ESKITVLT 451 Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556 + EIV+ G++ + D+TPFYA +GGQ D G + DV+K G H Sbjct: 452 TEDEIVDALSDGERGTIFVDETPFYATSGGQEADHGVIKCGDGEFVVEDVKKMLGGKIGH 511 Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616 + +G+++ + LT+D Q R + NHSATHLL AL T+LG+HV Q+GS + Sbjct: 512 IGYMAKGMMKVGDQVTLTVDSQRRVLCARNHSATHLLQKALRTVLGTHVEQSGSYVDDKR 571 Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676 LRFD +H +T EL+ +ED VN+ I+++LPVV + M E+A +GA AL G KY D V Sbjct: 572 LRFDFSHFSAMTPEELQKVEDMVNESISRSLPVVIKNMPIEEARKTGAQALFGEKYGDIV 631 Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736 RVV++ G +S CGGTHV++T EI I+SES + AG+RRIEA+T + + Sbjct: 632 RVVNM-----GDYSIEFCGGTHVANTSEIGAFKILSESGVAAGVRRIEALTSKGLMDYYG 686 Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKI 791 ++ L A LK + V ++ + E ++L K +L + ++ Sbjct: 687 ELEQLLHEAAKLLKATPDTVSEKIAHLQAENKELHSEVESLKSKLAKDAMGDVMDQVEEV 746 Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-F 850 A V ++ + ++D L+ + D L++KI G++++ S K S++ T++ + + Sbjct: 747 AGVKVIAVSVEDMDMNGLRDLGDQLKEKIGEGVVVIAS-SANGKVSLMATATDEAMKKGA 805 Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +A +L + A +GGGG GGRP+MAQ+GG N A+A V L + Sbjct: 806 HAGNLIKAIASCVGGGG-GGRPNMAQAGGKNPAGIPDALAKVKEVLAE 852 >gi|254415207|ref|ZP_05028969.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] gi|196178013|gb|EDX73015.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] Length = 877 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 337/906 (37%), Positives = 496/906 (54%), Gaps = 50/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ K H++LPS+SL+P +DPT++ T +GM+PFK IF GQ + + T Sbjct: 9 SGNQIRQKFLDFYDKRQHQVLPSASLVP-DDPTVLLTIAGMLPFKPIFLGQRQSDFSRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T F+L Sbjct: 68 TSQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTNVFELPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ ED+EAF +W+ G+ A +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 124 ERLIVSVFREDDEAFAIWRDKIGIPAHRIQRMGEEDNFWASGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + L +IDTG+GLERMA +LQ+ N Sbjct: 184 -KGDKDIDLEDDTRFIEYYNLVFMQYNRDADGNLTPLQNKNIDTGLGLERMAQILQQVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ + Y ++ + +VI DH+R+ LIADGI +N GRGY Sbjct: 243 NYETDLIFPIIKTAAEIAELDYAKSDEKTKVSLKVIGDHIRAVVHLIADGITASNIGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + YP + + I+ L+ E+ +F Sbjct: 303 ILRRLIRRVVRHGRLIGIQGEFTTQVADTAIALAEDTYPNVRERNDAIQAELQREESQFR 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RG LL +L+ + ++G AF LYDTHG PL++ Q+I GL +DI + Sbjct: 363 KTLARGEKLLADILAQKPEQ--ISGRDAFTLYDTHGFPLELTQEIAEEHGLT-VDIAGYE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQ+ ++A + + + AT+F+GY Sbjct: 420 AAMKEQQENSQAAHETVDL-LAQGSLDEVTSGVAATEFLGYT------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A+V +GE VE A +G +V+VV DQTPFYAE+GGQ+GD G GD Sbjct: 461 -----VPATTAQVMALVAEGESVESAQTGTEVQVVLDQTPFYAESGGQIGDRGYLSGDN- 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D KK FVH VERG L ++ ID RR+ NH+ATHLL AL Sbjct: 515 LVVRIDDVKKESDFFVHFGRVERGTLNLGDTVTAQIDRACRRRAQANHTATHLLQAALKK 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD S+ +TS EL IED +N IA+ IM DA Sbjct: 575 IVDPSISQAGSLVAFDRLRFDFNCSRSLTSEELTQIEDQINTWIAEAHGADVAIMPLTDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY D VRV+ S LCGGTHV++T EI + IV+E+ + +G Sbjct: 635 KAKGAIAMFGEKYADEVRVIDFPG-----VSMELCGGTHVNNTAEIGVFKIVAETGVASG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L +D+ +K L+ KV + R+ + E + Q K Sbjct: 690 IRRIEAVAGPAVLDYLNLRDKVVKELSDRFKVKPEEIPDRITNLQNELKASQKELEAVKQ 749 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + + + + + +++ LK+ + LQ+K+ ++L + E Sbjct: 750 ELALAKSDQVLSQAESVGEFKVLVANLGDIEPDALKTAAERLQQKLGDSAVVLGSVPTEG 809 Query: 835 KASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ + + + A AK+ GGGG GGRP++AQ+GG + +K +A+ Sbjct: 810 KVSLVAAFSAKIYKDKQLQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDASKLPEALDAA 868 Query: 893 ASFLKK 898 L + Sbjct: 869 KRQLIE 874 >gi|291522221|emb|CBK80514.1| alanyl-tRNA synthetase [Coprococcus catus GD/7] Length = 880 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 351/908 (38%), Positives = 510/908 (56%), Gaps = 48/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++ +R FLEFF+ GH + S SLIP ND +L+ NSGM P K FTG E P + VT Sbjct: 6 SLNELRKMFLEFFESKGHLAMKSFSLIPHNDNSLLLINSGMAPLKPYFTGAEIPPRRRVT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R G DL+NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 66 TCQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTQVVGLDP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY ++Y +D+EAF +W K G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 DRLYPSIYQDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEK 180 Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 YGCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHNHYTDLIQKNIDTGMGLERLAVVVQDV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +D+D + L + G+KY + V+ R+I DH+RS++F+I+DGI+P+NEGRG Sbjct: 241 DSIFDVDTIQALRNKVCDLAGVKYLEKHETDVSIRIITDHIRSATFMISDGIMPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + L + YPEL + K I L E+++F Sbjct: 301 YVLRRLIRRAARHGRLLGIEGKFLAKLSATVIETSKDGYPELEEKKEFIFNVLTQEEDKF 360 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KT+D+GL +L+ + L ++L+G AFKLYDT+G P+D+ ++IL +G ID Sbjct: 361 NKTIDQGLSILNEMEEKLSAEDKKVLDGADAFKLYDTYGFPMDLTKEILEEKGY-DIDEE 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F ++EQR +AR + + + + F+GY+ Sbjct: 420 GFTVCMQEQRQKARDARKVSNYMGKDATVYDEIDPSVTSVFVGYEKTE------------ 467 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S + + + E+ + GQ + +TPFYA +GGQ+ DTG G Sbjct: 468 -----------CESPITVLTTETELTDALTDGQTGTIFTQETPFYATSGGQMADTGVITG 516 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ DV K G H +V G+ + + L I+ + R + NHSATHLL A Sbjct: 517 PEGTFEVKDVVKLLGGKIGHIGVVTSGMFKKGDVVKLAINKEKRSDTAKNHSATHLLQKA 576 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV Q GS D LRFD TH +T EL +ED VN+ IA+ LPV+T++MN Sbjct: 577 LRIVLGSHVEQAGSFNNQDKLRFDFTHFSALTQEELDRVEDIVNEEIAKGLPVLTKVMNI 636 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 EDA +GA AL G KY+D VRVVS+ G S LCGGTH +T I I+SE+ + Sbjct: 637 EDAKKTGAMALFGEKYSDDVRVVSM-----GDFSKELCGGTHTDNTASIAAFKIISETGV 691 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG + ++KL A K +V R+E + EE + L + + Sbjct: 692 AAGVRRIEALTGNGVFKYYKEVEKKLHEAAKTAKCDPAQLVKRIEGLHEEIKTLTAENNQ 751 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K ++ + + + V+F+ + ++D +EL ++ D L+ K+ G+I+L Sbjct: 752 LKNKMAKDAMGDVMNQVKDVNGVSFLPVHVKDIDMQELMNLGDQLKAKLGDGVILLAS-E 810 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K S+L + T+ + + +A +L + AK++GGGG GGRP+MAQ+GG N +QA+ Sbjct: 811 NGGKVSLLAMATDGAMKKGAHAGNLIKAVAKLVGGGG-GGRPNMAQAGGKNPAGINQALE 869 Query: 891 GVASFLKK 898 A L K Sbjct: 870 AGAEELAK 877 >gi|167746982|ref|ZP_02419109.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662] gi|167653942|gb|EDR98071.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662] Length = 868 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 348/899 (38%), Positives = 514/899 (57%), Gaps = 48/899 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 FL+FF+ H ++ S SL+P ND +L+ N+GM P K FTGQE P V T QKC+R Sbjct: 1 MFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPKTRVATCQKCIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ LD RLY +V Sbjct: 61 TG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPERLYPSV 116 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 Y +D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D+GE G P Sbjct: 117 YLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPD 175 Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 E +RY+E+WN VF QFE L +IDTGMGLER+A V+QE + +D+D Sbjct: 176 CTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVVVQEVDSIFDVD 235 Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 K + ++ G+ Y + N ++ RVI DH+RS+SF+I+DG++P+NEGRGYVLRR++ Sbjct: 236 TIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSNEGRGYVLRRLI 295 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA + R+LG + + L + E YPEL + + I + L +E+E+F +T+D+G Sbjct: 296 RRAARHGRMLGMKDLFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTEEEQFNRTIDQG 355 Query: 366 LVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L + + ++ L G AFKLYDT+G PLD+ ++IL +G +D F +A+E Sbjct: 356 LQILADMEEAMSREGKKELAGKDAFKLYDTYGFPLDLTKEILEEKG-ISVDETGFQRAME 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 +QR +AR + + + ++F+GYD L Sbjct: 415 QQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL-------------------- 454 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + A+ E+ + V GQ+ ++ +TPFYA +GGQ D G + + + Sbjct: 455 ---TCESEIIAMTTDQELTDSLVEGQRGTIICSRTPFYATSGGQEADQGVILSENSSFAV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DV K + G F H V G L ++L ++ +NRRQ NHSATHLL AL T+LGS Sbjct: 512 EDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHLLQKALRTVLGS 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS LRFD TH P+T E+K +E VN+ IA +LPV T++M+ ++A +G Sbjct: 572 HVEQAGSSNNAKHLRFDFTHFSPMTPEEIKKVEHIVNEEIAASLPVETKLMSMDEAKNTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVVS+ G S LCGGTHV++TG I I+SE+ I AG+RRI Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITAFKILSETGIAAGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EAIT + + +E+L + +K + ++ R+E + E ++L + K +L Sbjct: 687 EAITDKAVFEYYEKMEEELMEASKVVKSTPAKLMARLEALMTELKELHSENESLKSKLAK 746 Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L + V ++ +++VD L+ + D+L++K+ G+I+L S K + Sbjct: 747 DALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVLAS-SLGGKVFL 805 Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + T+ +A +L + A +GGGG GGRP+MAQ+GG D AIA L Sbjct: 806 VAMATDGAQKAGAHAGNLIKGIAGCVGGGG-GGRPNMAQAGGKKPEGIDDAIAKAKEEL 863 >gi|269798241|ref|YP_003312141.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008] gi|269094870|gb|ACZ24861.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008] Length = 871 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 332/909 (36%), Positives = 498/909 (54%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QK +R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTCQKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+ Y N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR RAR + + LK++ Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ +S V + + E ++ A G ++ V+ TPF+AE GGQLGDTG + Sbjct: 449 ----ELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEVLVNEEILKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A ++ +AS LK + R+ ++ E ++ Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLAEAKETAKELE 739 Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +++ + + DV F++ + EL+ + D K+ SG++++ Sbjct: 740 QIRKEVSAAGAADIIAGKVVVGDVEFVAAAVKASSIDELRDLADMGLDKMNGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K + + V++D++ + A ++ + +A+ + GG GGGRP MAQ+GG K +A Sbjct: 800 VMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858 Query: 889 IAGVASFLK 897 + LK Sbjct: 859 LKAGGEALK 867 >gi|78778430|ref|YP_396542.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312] gi|123554842|sp|Q31DD9|SYA_PROM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78711929|gb|ABB49106.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312] Length = 886 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 314/908 (34%), Positives = 500/908 (55%), Gaps = 52/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G ++ + T Sbjct: 11 TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+T + L Sbjct: 70 SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V+ EDEE+ K+W+ G+ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 126 ENIIVSVFHEDEESAKIWRDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+G+R+IE +NLVFMQ+ + + + L +IDTGMGLERMA +LQEK N Sbjct: 186 -KGLQNIDLEDGDRFIEFYNLVFMQYNRDSNGKLTDLKFKNIDTGMGLERMAQILQEKQN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ ++ + Y ++ N ++I DH R+ LI+DG+ +N GRGY Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG T + H+ M + YP+L LI ++ E+ RF Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIATVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LLD ++S ++++G AF+LYDT+G PL++ + +D+ F Sbjct: 365 ETLERGEKLLDELISS--GQKLISGFKAFELYDTYGFPLELT-VEIAEENSISVDVKGFE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + Q+ RA+A S + + + + + T F GYDLL Sbjct: 422 EEMNAQKERAKAASSNIDLTLEGSLEREI-DLFNKTVFNGYDLLLS-------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + +K I +V++A GQKV +V DQT FY E+GGQ+GD G + Sbjct: 467 ---------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKDL 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D + + +F+H+ +++GIL + + NR + + NH+ATHLL AL + Sbjct: 518 EVLV-DNVMRKKNVFLHYGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKS 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ V Q GS + + LRFD S PI+ ++ IE VN I +N + + M++ +A Sbjct: 577 VVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA A+ G KY+D VRVV+V S LCGGTHV +T E+ I+SE I AG Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA++GQ A + ++ + L+ LK + + RV + E K K Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAELINKNKEIQKMKD 751 Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831 ++ S + + + + I +D L+S L + + I+++G Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + +K ++ + +D + +A + A++ GG GGG+P+ AQ+G + +K A+ Sbjct: 812 ENRKLLFVVSLGDDPVKIGLHAGKIINEIARICSGG-GGGKPNFAQAGAKDIDKLSDALD 870 Query: 891 GVASFLKK 898 ++L+K Sbjct: 871 YAKNYLQK 878 >gi|212638588|ref|YP_002315108.1| alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1] gi|212560068|gb|ACJ33123.1| Alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1] Length = 877 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 361/915 (39%), Positives = 531/915 (58%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRQMFLDFFKEKGHAVEPSASLIPIDDPSLLWINSGVATLKKYFDGRVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL +T++ EDEEAF +W GL ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDPNRLSVTIHPEDEEAFDIWHNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEQFGNDPNDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 M ++LQ+ N+D DLF +I+A+EQ++G Y + V +VI DH+R+ +F I DG Sbjct: 234 MCSILQDVPTNFDTDLFMPIIRATEQISGETYRTDAEKDVAFKVIADHIRTVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLNIQRPFMYELVPVVGEIMVDYYPEVKEKASFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ + + ++G+ F+LYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLNEGLAILASVIEKEKQRGSDTISGEDVFRLYDTYGFPVELTEEYAEEE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RARA + S + L + + F+GYD L Sbjct: 414 GMK-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKVESTFVGYDQL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +SS+V+ IV+ G++V E GQ+ +V+ +TPFYAE+GGQ+ Sbjct: 466 ------------------SISSVVEVIVKDGQLVNEVSEGQEAQVILRETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G+ + + DVQK G +HH +VE+G+++T + + +D R + NH+ Sbjct: 508 ADRGWIEGETGKAYVKDVQKAPNGQHLHHIVVEQGVIQTNGTYIAHVDEAARVDIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +NL Sbjct: 568 ATHLLHQALKDVLGVHVNQAGSLVAPDRLRFDFTHFGQVKQEELEQIEAIVNEQIWRNLS 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V ++A A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VAIEYKPLDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q LK +A LK + +V+ R++ + + R Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYRLMNDQIALLKEVAEKLKTNPKDVLTRIDTLMNDMR 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L+ + ++ V ++ ++ D L++++D L++K+ S Sbjct: 743 ELQRENESLAARLSHMEAENLVNQVKEVNGVPLVTSKVNNADMNSLRAMVDDLKQKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K +++ VT DL+DR ++A L + A GGGG GGR MAQ+GG + Sbjct: 803 IIVLASVQQN-KVNLIAGVTNDLIDRGYHAGKLIKEVATRCGGGG-GGRADMAQAGGKDA 860 Query: 883 NKADQAIAGVASFLK 897 NK D+A+ V ++K Sbjct: 861 NKVDEALKFVEQWVK 875 >gi|228941556|ref|ZP_04104105.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974486|ref|ZP_04135053.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981080|ref|ZP_04141381.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228778621|gb|EEM26887.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228785203|gb|EEM33215.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818112|gb|EEM64188.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942170|gb|AEA18066.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis CT-43] Length = 880 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFNKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLIGQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|126695385|ref|YP_001090271.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301] gi|205830177|sp|A3PA95|SYA_PROM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126542428|gb|ABO16670.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301] Length = 886 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 315/908 (34%), Positives = 496/908 (54%), Gaps = 52/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G ++ + T Sbjct: 11 TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+T + L Sbjct: 70 SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V+ EDEE+ K+W G+ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 126 ENIIVSVFHEDEESAKIWIDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+K N Sbjct: 186 -KGLQNIDLEDGDRFIEFYNLVFMQYNRDQNGKLTDLKFKNIDTGMGLERMAQILQKKQN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ ++ + Y ++ N ++I DH R+ LI+DG+ +N GRGY Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG T + H+ M + YP+L LI ++ E+ RF Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LLD ++S ++++G AF+LYDT+G PL++ + +D+ F Sbjct: 365 ETLERGEKLLDELISS--GQKLISGFKAFELYDTYGFPLELT-VEIAEENSISVDVKGFE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + Q+ RA+A S + + + + + T F GY+ L Sbjct: 422 EEMNAQKERAKAASSNIDLTLEGSLEREI-DLFNKTVFNGYNSLLS-------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + +K I +V++A GQKV +V DQT FY E+GGQ+GD G + Sbjct: 467 ---------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKDV 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D + + +F+HH +++GIL + + NR + + NH+ATHLL AL Sbjct: 518 EVLV-DNVMRKKNVFLHHGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKL 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ V Q GS + + LRFD S PI+ ++ IE VN I +N + + M++ +A Sbjct: 577 IVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA A+ G KY+D VRVV+V S LCGGTHV +T E+ I+SE I AG Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA++GQ A + ++ + L+ LK + + RV + E K K Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQSELINKNKEIQKMKD 751 Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831 ++ S + + + + I +D L+S L + + I+++G Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + +K ++ + +D + +A L A++ GG GGG+P+ AQ+G + +K AI Sbjct: 812 ENRKLLFVVSLGDDAVKIGLHAGKLINEIARICSGG-GGGKPNFAQAGAKDIDKLSDAID 870 Query: 891 GVASFLKK 898 ++L+K Sbjct: 871 YAKNYLQK 878 >gi|257059315|ref|YP_003137203.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802] gi|256589481|gb|ACV00368.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802] Length = 879 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 339/906 (37%), Positives = 513/906 (56%), Gaps = 48/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+F+ H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P Y T Sbjct: 9 TGAQIRDKFLQFYASKHHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKNPDYPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI +W+L T+ F+L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V++ED+EAF++W+ G+ +I R+ DNFW TGPCGPCSE+++D Sbjct: 124 ENIVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ G+ Y+ + + +VI DH+RS +IADGI +N RGY Sbjct: 243 NYETDLIFPIIETAAKIAGINYKNTDKKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + S YP + + + I+ L+ E+ RF Sbjct: 303 VLRRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL +++ K+ ++G AF LYDT+G PL++ Q+I +GL +D+ F Sbjct: 363 ETLERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQ+ R++A + T + L E T+F+GY + Sbjct: 422 AAMKEQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYSSPQ--------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + V+A++ G+ VE A +G +V+++ DQTPFY E+GGQ+GD G GD + Sbjct: 466 --------IMAKVQAVLVDGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDNL 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV KK GIFVH VERGI+ E ++ TID RR++ +H+ATHLL AL Sbjct: 518 VVRIEDV-KKESGIFVHFGRVERGIIAVENTVTATIDRACRRRVQAHHTATHLLQAALKK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +SQ GS + D LRFD + ITSAEL+ IE +N IA+ IM+ E A Sbjct: 577 VVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEKA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY+ VRV+ V S LCGGTHV +T EI L I+SES I +G Sbjct: 637 KAKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G +L ++ +K L K+ + R+ + E + Q K Sbjct: 692 VRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVKQ 751 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L V + + + ++D K L++ + LQ+K+ ++L + E Sbjct: 752 ELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSED 811 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K ++ ++ + + A AK+ GGGG GGRP++AQ+GG + NK +A+ Sbjct: 812 KVVLVAAFSDKVHKEKQLMAGKFIGEIAKICGGGG-GGRPNLAQAGGRDANKLPEALLIA 870 Query: 893 ASFLKK 898 L + Sbjct: 871 KQQLIE 876 >gi|163942138|ref|YP_001647022.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] gi|229135211|ref|ZP_04264010.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|205829987|sp|A9VI09|SYA_BACWK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163864335|gb|ABY45394.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] gi|228648253|gb|EEL04289.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196] Length = 880 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ILG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|229186628|ref|ZP_04313789.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1] gi|228596887|gb|EEK54546.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1] Length = 880 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI W+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWGWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|302871868|ref|YP_003840504.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574727|gb|ADL42518.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 881 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 342/909 (37%), Positives = 518/909 (56%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 3 MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 63 TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL +I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 178 DKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + +VT +Y V+ RVI DH+R F+I DGILP+NEGR Sbjct: 238 VDSLFDIDIVKAIRNKVCEVTNYEYGKNAEKDVSVRVITDHIRGIVFMIGDGILPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ R Sbjct: 298 GYVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNPYPELVQKAEYIKKVLYNEESR 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL +L+ + L K++ ILNG++AFK+YDT+G PLD+ ++I +G+ +D Sbjct: 358 FNQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +++Q+ RARA L + + I ++E T F+GY+ L+ Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIEEDI-ETVFVGYETLKQ---------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + I + E V A V+ D+TPFYAE+GGQ+ D G Sbjct: 466 -------------ESKILKIFMEDEEVAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G+ ++ DV+K +G +H V +G + S++ +D R NH+ATHLLH Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVIAKVDEGLRFATMKNHTATHLLHS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG H Q+GS ++ D LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 573 ALRKILGQHAQQSGSQVSADRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + L+ Sbjct: 688 VAAGVRRIEAITGNKVYEFILNSQQTLKQLRSKVKASTDSEILAKIEQLENRIKDLENEV 747 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + ++S + + + D +K D ++++ S I+L Sbjct: 748 EKYKLLVIESEISSLIDKAVNYGEFKLIVNRKETDDMDYVKLFTDKIKER-DSKAIVLNI 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K +VL+ +++ + + + + + VL GG GGGRP AQ GG + K D A Sbjct: 807 LEQGNKVTVLMSCSKEAVKKGVDCGKVVKEICAVL-GGKGGGRPEFAQGGGNDILKIDIA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 VQTAENILK 874 >gi|302327820|gb|ADL27021.1| alanine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 882 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 342/911 (37%), Positives = 509/911 (55%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +F++FF+ GH + SS ++P +DPTLMFTN+GM FK IF G ++ Sbjct: 5 MTSAQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + L Sbjct: 65 CNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLP 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 + RL+ TVY +D+EA+++WK +SGL D+I+R + NFW M +TGPCGPCSEI +D+G Sbjct: 125 KERLFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGD 184 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E + G + E +RYIEIWN VFMQ+E+ + L ++DTGMG ER+ Sbjct: 185 LATQAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDTGMGFERICA 244 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPAN 294 +LQ KT+NYD D+F +I +++G+ Y HRVI DH+R+ SF IADG LP+N Sbjct: 245 ILQGKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA +ARLLG +P + L+ L MG A+PE+ + K + ++SE Sbjct: 305 EGRGYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F +TLD GL + + L K + + GD F LYDT+G P D+ + +GL ID Sbjct: 365 EESFIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGL-LID 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + + + EQ+ RARA+ + + W E +T F+GY+L + Sbjct: 424 EEGYEKCMNEQKERARANMKQGINTMGTEGWTQYSE--ASTNFVGYELSACETKVVR--- 478 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + V +V + +PFYAE GGQ+GD G Sbjct: 479 ---------------------WREDKGVLS--------IVLETSPFYAEMGGQVGDKGTL 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATH 591 + + +Q+ D K + V +G + T+D R + NHSATH Sbjct: 510 VSADLEIQVFDT-VKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG+HV Q GS ++ + LRFD +H +T+ E++ +ED VN I + LPV T Sbjct: 569 LLQAALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ ++A ASGA AL G KY D+VRVV + G S LCGG HV +TG I ++ IV Sbjct: 629 DVMDVDEAKASGAMALFGEKYGDKVRVVKMGD-AGVEFSRELCGGLHVQNTGNIGMVKIV 687 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SESS+ AG+RRIEA++G+ A S L + L +L L+ V+ R+++ + + + L+ Sbjct: 688 SESSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLE 747 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKIQSGIIML 827 KL+L + +N + + ++ K+++D +Q K+ + + Sbjct: 748 KSLQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEKYKNLLDGVQNKLDVDSVAV 807 Query: 828 VGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + S+ ++V +++ A D+ R AK G GGGRP AQ+G K Sbjct: 808 IANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKACN-GKGGGRPDRAQAGTREPEKIA 866 Query: 887 QAIAGVASFLK 897 +AIA ++++ Sbjct: 867 EAIANANNWIR 877 >gi|229062084|ref|ZP_04199409.1| Alanyl-tRNA synthetase [Bacillus cereus AH603] gi|229169132|ref|ZP_04296847.1| Alanyl-tRNA synthetase [Bacillus cereus AH621] gi|228614360|gb|EEK71470.1| Alanyl-tRNA synthetase [Bacillus cereus AH621] gi|228717236|gb|EEL68911.1| Alanyl-tRNA synthetase [Bacillus cereus AH603] Length = 880 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 353/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ILG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|311031558|ref|ZP_07709648.1| alanyl-tRNA synthetase [Bacillus sp. m3-13] Length = 877 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 356/915 (38%), Positives = 532/915 (58%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKHLTSAQVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPAN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKKEAIDWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +L +T++ EDEEA+K W ++ G+ A++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFEAEKLSVTIHPEDEEAYKYWNEVIGVPAERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE L E ERY+EIWNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGESYGNDLNDPELYPGGENERYLEIWNLVFSEFNHNPDHTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ N+D DLF +I+A+E V+G KY N +VI DH+R+ +F + DG Sbjct: 234 MVSVIQDVPTNFDTDLFIPIIEATENVSGEKYRTNVEKDTAFKVIADHIRTVTFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ LG P M L+P + M YPE+ + + I+ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLGINRPFMYELVPVVAEIMVDFYPEVKEKQDFIQRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V++ +D +++G AF+LYDT+G P+++ ++ + + Sbjct: 354 VKTEEERFHETLNDGLAILSTVIAKAKEDGSTVVSGSDAFRLYDTYGFPVELTEEYVEEQ 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F + +E QR RAR+ S + L E + F+GYD L Sbjct: 414 GMT-LDHEGFEKEMEMQRDRARSARQDSNSMQVQSGV--LGEIRTESSFVGYDQL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + IV+ GE+ + AV+G +V+V+ +TPFYAE+GGQ+ Sbjct: 466 ------------------TAETTLSIIVKNGELADSAVTGDEVQVILAETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + R + DVQK G +H +VE G+L E ++ + +NR Q+ NH+ Sbjct: 508 ADHGYIVTESGRGFVKDVQKAPNGQNLHTIVVEEGVLNREQAVKAEVHAKNRAQIIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL +LG+HV+Q GS +T D LRFD +H +T E++ IE VN+ I ++ Sbjct: 568 ATHILHQALKDVLGTHVNQAGSQVTADRLRFDFSHFGQVTQEEIEKIEAIVNEKIWASIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV + +A A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VVIENKSISEAKAMGAMALFGEKYGDIVRVVQV-----GEYSLELCGGCHVPNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RR+EA+TG+ A L Q + LK A+ LK V R++ + + + Sbjct: 683 KIVSESGIGAGTRRMEAVTGEGAYRLLNDQVQLLKDAAAKLKTKPQEVGTRIDVLLSDMK 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + +L + S + V + ++ D L++++D L+ K+ SG Sbjct: 743 ELQRENQSLASKLGNIEASSLSSKAKDVNGVTMLVSKVAGTDMNNLRTMVDDLKNKLGSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + ++ K ++ VT+DL+++ ++A + + A GGGG GGRP MAQ+GG N Sbjct: 803 IIVLASV-QDGKVNISAGVTKDLIEKGYHAGKVVKEVATRCGGGG-GGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLK 897 + D A+ V ++K Sbjct: 861 EQVDSALQSVEDWIK 875 >gi|322434171|ref|YP_004216383.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9] gi|321161898|gb|ADW67603.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9] Length = 941 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 344/970 (35%), Positives = 512/970 (52%), Gaps = 114/970 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL FF+ H + SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 5 SGSQIREDFLRFFEGKAHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAEKRDYSRAA 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT F + Sbjct: 65 SSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKKDAIAYAWELLTSAAWFAI 124 Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 D+ +LY+T+++ DEEA++ W + G+ A++I + DNFW+M +TGPCGPCSE Sbjct: 125 DKEKLYVTIFEGDEKVPRDEEAYQFWLE-VGVPAERIFELGAKDNFWAMGDTGPCGPCSE 183 Query: 175 IFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 I++D G G E+ +RY+EIWNLVFMQFE+ + LPK SIDTGMGLER Sbjct: 184 IYYDLGLAASESGADVPFGEDDQRYMEIWNLVFMQFERASDGTLTPLPKPSIDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRS 281 ++ VLQ +NYD DLF LI+ + ++T N + + R+I DH R+ Sbjct: 244 VSCVLQGVMSNYDTDLFIPLIKRAAELTLKPTSENPDMGHPVGDEKGAASLRIIADHARA 303 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 ++FLIADG+ PANEGRGYVLR+I+RR + + RLLG +P M ++ A+ EM AYPEL+ Sbjct: 304 ATFLIADGVQPANEGRGYVLRKILRRGIRHGRLLGQEQPFMFEMVKAVRDEMKVAYPELV 363 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------------- 378 + + + + +E+E+F + +++ + LD L + + Sbjct: 364 EHAERVSKVVLAEEEQFARVIEKAMNELDRTLDAIKQLPSVLDRWNKTPESAPDYKEAEA 423 Query: 379 -----------------------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 + G AF ++T+GLP+D M+D G +D Sbjct: 424 AFWVTFELVHRTVNKNEARPKSRHGMFPGRTAFFFFETYGLPIDFMEDAARDAG-IELDR 482 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A E++ RARA G T ++ L T+F GY LR Sbjct: 483 AEFEKAKIEEQERARASWKGGSQKTASPVYRELA----KTEFEGYSALRVDG-------- 530 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A+V+ G V G++ EVV D T FYA++GGQ+GD G Sbjct: 531 --------------ARVIALVKDGVGVHVLSPGEEGEVVLDATSFYADSGGQVGDVGWLY 576 Query: 536 GDGIRLQITDVQ--KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +V+ K H ++ + + + ++ + R NH+ THLL Sbjct: 577 AADHTTVLAEVRGANKPVQGVFAHKVIAKVAIAVGDEVDTVVNGEVRAATMRNHTGTHLL 636 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-- 651 H AL +LG HV Q GS + D LRFD +H + EL+ IE VN + +N PV T Sbjct: 637 HAALREVLGKHVKQAGSLVNRDRLRFDFSHFTGVAEEELREIETIVNAQVLKNTPVETLV 696 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + GA AL G KY D+VRVV + G S+ LCGGTH +TGEI ++ +V Sbjct: 697 DVPIDVAVNDYGAMALFGEKYGDKVRVVRI-----GEFSTELCGGTHTLATGEIGVIKLV 751 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ESS+ +G+RR+EAI+G A ++ + + R+ EE +KL+ Sbjct: 752 GESSVASGVRRLEAISGTGALDEFRRGF----EVSRVVPGGAAGLRDRLASDEEEIKKLR 807 Query: 772 LIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +L+ + ++ V ++ + VD +++ ++D L+ K+ SG+++ Sbjct: 808 RELDGLRLKAAQAATADAAAGAIEVKGVKVLAKRLDGVDKAQMRELVDQLRGKLGSGVVV 867 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + E K ++++ VT+DL + A + L A ++ GG GGGRP +A++GG + ++ D Sbjct: 868 LGAATAEGKVALIVGVTKDLTGKVQAGKIVGLLAALV-GGKGGGRPDLAEAGGSDVSQLD 926 Query: 887 QAIAGVASFL 896 A+ + Sbjct: 927 AALGKAGEVV 936 >gi|160880749|ref|YP_001559717.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg] gi|205829959|sp|A9KMW7|SYA1_CLOPH RecName: Full=Alanyl-tRNA synthetase 1; AltName: Full=Alanine--tRNA ligase 1; Short=AlaRS 1 gi|160429415|gb|ABX42978.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg] Length = 879 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 353/911 (38%), Positives = 513/911 (56%), Gaps = 50/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M V+ +R +L+FF+ GH L S SL+P ND +L+ NSGM P K FTGQE P Sbjct: 1 MKVYGVNELRKMYLDFFESKGHLKLNSFSLVPQNDKSLLLINSGMAPLKPYFTGQEIPPK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ Sbjct: 61 KRVTTCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVV 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L RLY ++Y ED+EAF +W K G++ ++I R+ DNFW GPCGPCSEI++D Sbjct: 117 GLSGDRLYPSIYLEDDEAFDIWNKEVGIAPERIFRMGKADNFWEHG-AGPCGPCSEIYYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P E +R+IE+WN VF QF L +IDTGMGLER+A V Sbjct: 176 RGEKYGCGDPNCTVGCECDRFIEVWNNVFTQFNSDGNGNYEELENKNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ +DID K + ++ +Y + ++ R+I DH+RS +F+ +DGI+P+N Sbjct: 236 VQDVDTLFDIDTMKAIRDHVCKMANAEYKVDPKKDMSIRLITDHIRSVTFMTSDGIIPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + L + E YPEL + K I + L E Sbjct: 296 EGRGYVLRRLLRRAARHGRLLGIQGKFLAELSKTVIAESKDGYPELEEKKEYILKVLTIE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F KT+D+GL +L + L + LNG+ AFKLYDT+G PLD+ ++IL +G + Sbjct: 356 EEKFNKTIDQGLSILSEMEEALVSNGTKTLNGEDAFKLYDTYGFPLDLTKEILEEKGFS- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A++ QR AR+ + + + + F+GYD Sbjct: 415 IDEEGFKKAMQVQRETARSARAVTNYMGADASIYDEIDPAITSNFVGYDRTSH------- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S + + + ++ +E V GQ ++ D+TPFYA GGQ D G Sbjct: 468 ----------------TSKISVLTTETDLTDEVVGGQTATIIVDETPFYATMGGQTADIG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G ++ D K G H V +G + ++ LTID Q R+ + NHSATHL Sbjct: 512 FIVGKDAEFEVEDTIKLKGGRVGHLGTVTKGSFKVGETVTLTIDTQKRQAIGKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LGSHV Q GS +T + LRFD TH +T E+ +E VN+ IA+N+PVVT Sbjct: 572 LQKALRNVLGSHVEQAGSFVTSERLRFDFTHFSALTKEEIAKVEAMVNEEIAKNVPVVTD 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ EDA SGA AL G KY D VRVV++ G S LCGGTHV++TG I + I+S Sbjct: 632 VMSVEDAKKSGAMALFGEKYGDSVRVVTM-----GDFSKELCGGTHVANTGSITVFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I AG+RRIEAIT + +E+L A K ++V R+E + EE + Sbjct: 687 EAGIAAGVRRIEAITSNAVFEYYKSMEEELHEAAKVAKTEPASLVKRIESLQEELKTALS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K K +L L ++ V ++ +++ D L+++ D L++K+ +I+L Sbjct: 747 ENEKLKAKLANNSLGDVMNQVVEVKGVKLLASKVTDADMNGLRNLGDQLKEKLGECVILL 806 Query: 828 VGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 S E K +++ + T+ + +A +L + A ++GGGG GGRP+MAQ+GG N + D Sbjct: 807 ASAS-EDKVNLIAMATDGAMAKGAHAGNLIKEVAVLVGGGG-GGRPNMAQAGGKNPSGID 864 Query: 887 QAIAGVASFLK 897 AI S ++ Sbjct: 865 AAIEKAVSVVE 875 >gi|298491784|ref|YP_003721961.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708] gi|298233702|gb|ADI64838.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708] Length = 880 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 331/907 (36%), Positives = 508/907 (56%), Gaps = 49/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ + GHELLPS+SL+P DPT++ T +GM+PFK IF GQ P ++ T Sbjct: 9 SGNDIRALFLDFYTQRGHELLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPDFKRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W+L T+ F L Sbjct: 68 TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWELSTQVFRLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EAF +W+ G++ +I R+ ++NFW TGPCGPCSEI +D Sbjct: 124 ERLVVSVFEEDDEAFGIWRDKIGVNEKRIKRMGADENFWVSGPTGPCGPCSEIHYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ K N Sbjct: 184 L-GEDNIDLEDDSRFIEFYNLVFMQYNRDASENLTPLQNKNIDTGMGLERMAQILQNKPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + +V + Y ++ + +VI DH+RS +IAD I +N GRGY Sbjct: 243 NYETDLIFPIIETAAKVAKIDYHHSDEDTKVSLKVIGDHIRSVVHMIADEIRASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G E + + + S YP L Q + I+ L+ E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGICEEFINQVAERAISLSESVYPNLRQREASIKAELQREEANFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTLDRG LL ++ + + + ++G AF LYDT+G PL++ Q++ L +D+ Sbjct: 363 KTLDRGEKLLAEIIQEVKQKGLTSMSGKSAFTLYDTYGFPLELTQEVAEENNLT-VDVDG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN +++Q RA+A + T + L E T+FIGY Sbjct: 422 FNAEMQKQVERAKAAHETIDL-TVQGSLDKLVEHIHTTEFIGYT---------------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V+ ++ G E A +G++V++V D+TPFYAE+GGQ+GD G G Sbjct: 465 -------AAATTAKVEVLLVGGISEETAEAGREVQIVLDRTPFYAESGGQIGDKGYISG- 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L + KK FVH +E G LR ++ I+ RR+ NH+ATHLL AL Sbjct: 517 DGVLVRVEEVKKESDFFVHFGHIESGTLRIGDNVKAQINTAYRRRSQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ +SQ GS ++ D LRFD + +TS E++ IE+ VN I++ ++ Sbjct: 577 KKVVDEGISQAGSLVSFDRLRFDFNCPRALTSEEVQQIEELVNTWISEAHSAKIEVLPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY + VRV+ S LCGGTHV++TGEI + I+SE+ + Sbjct: 637 EAKARGAVAMFGEKYGNEVRVIEFPG-----VSMELCGGTHVNNTGEIGVFKIISEAGVS 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +GIRRIEA++G +L +D+ + L+ LKV + R+ + E R + Sbjct: 692 SGIRRIEAVSGAAILDYLNVRDKVVNDLSDRLKVKPEEIPDRIRTLQTELRNSEKEIQTL 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + +A+ + + +VD++ LK+ + L + I +G ++L I + Sbjct: 752 KSQLAIVKSDSLLKTAKTVAEHRIIVAQMEDVDAESLKAAAERLLQTIGNGAVVLASIPE 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + ++ + A A++ GG GGG+P++AQ+GG + +K QA+ Sbjct: 812 AGKVSIVAAFSSEVNKKGVEAGKFVGAIARICSGG-GGGKPNLAQAGGRDASKLPQALET 870 Query: 892 VASFLKK 898 + L++ Sbjct: 871 AKTELEE 877 >gi|323490022|ref|ZP_08095243.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2] gi|323396318|gb|EGA89143.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2] Length = 874 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 349/915 (38%), Positives = 513/915 (56%), Gaps = 59/915 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ IR +++FF++ GH+ PS+ L+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKNLKAEDIRQMYIDFFKEKGHDQEPSAPLVPFEDPSLLWINSGVATLKKYFDGRVIPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKTEAIHWAWEFLTDEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +L +T++ EDEEA+ +W G+ A++IIR+ NFW + E GP GP SEIF Sbjct: 117 WIGFDADKLSVTIHPEDEEAYAIWLNEVGVPAERIIRL--EGNFWDIGE-GPSGPNSEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+EIWNLVF QF +LPK +IDTGMGLER Sbjct: 174 YDRGESYGNDISDPELYPGGENERYLEIWNLVFSQFNHNPDHTYTLLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA V Q+ NYD DLF +I+ +E+++G KY + +VI DH+R+ +F I DG Sbjct: 234 MACVAQDVPTNYDTDLFIPIIKKTEEISGKKYGENAEMDMAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ +A+ LG +P M L+P + M S YPE+ + I Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAKKLGVEQPFMYDLVPVVGDVMKSFYPEVNAKQDFIIRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E++RF +TL GL +L V+ + G+ AF+LYDT+G P+++ ++ Sbjct: 354 MKLEEQRFHETLHDGLTILSSVIEKQKAAGQNEIPGEDAFRLYDTYGFPVELTEEYAEEE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQR RAR + S ++ L A++FIGY Sbjct: 414 GM-AVDHKGFETAMQEQRDRARNARQNVNSMQSQSEV--LGNIKEASEFIGYSQTVSD-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V I++ GE+V+ A G++VEV+ DQTPFYAE+GGQ+ Sbjct: 469 ---------------------ANVLFIIKDGELVDSAQEGEEVEVILDQTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G D ++ + +V+K G +H V G T+ S+ +D RR NH+ Sbjct: 508 ADRGTLSNDFVQASVLNVKKAPNGQNLHSVRVNTGE-LTKTSVQAQVDASERRHTVKNHT 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV+Q GS + PD LRFD +H +T EL++IE VN+ + + Sbjct: 567 ATHLLHQALKDVLGTHVNQAGSYVGPDRLRFDFSHFGQVTKEELETIEQIVNEKVWDGIA 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T N ++A GA AL G KY D VRVV + +S LCGG HV +T EI L Sbjct: 627 VQTGYYNLQEAKEMGAMALFGEKYGDVVRVVEIGG-----YSLELCGGVHVLNTSEIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE I AGIRRIEA+TG+ A +L + L++ A LK S ++V +V+ + E + Sbjct: 682 KIVSEGGIGAGIRRIEAVTGKGAYENLKDSETILENAAGLLKSSPRDMVQKVQTVQAEMK 741 Query: 769 KLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + +++ + K+ D+ +S + D+ +L+ ++D L+ K+ Sbjct: 742 SLQRENESLLAKISNAQSAGILDAAQKVGDITVLSVKVEAKDNNQLRQLLDDLKSKMDKA 801 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + K + VT+DL ++A + + A+ GG GGGRP MA +G + Sbjct: 802 VIVLGATDGD-KVMLAAGVTKDLAGGDYHAGQIVKHVAEQC-GGKGGGRPDMAMAGAKDA 859 Query: 883 NKADQAIAGVASFLK 897 +K D+A+ V S +K Sbjct: 860 SKLDEALESVYSLVK 874 >gi|58698333|ref|ZP_00373249.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila ananassae] gi|225630565|ref|YP_002727356.1| alanyl-tRNA synthetase [Wolbachia sp. wRi] gi|58535157|gb|EAL59240.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila ananassae] gi|225592546|gb|ACN95565.1| alanyl-tRNA synthetase [Wolbachia sp. wRi] Length = 880 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 397/902 (44%), Positives = 555/902 (61%), Gaps = 54/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR F++FF N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K + Sbjct: 1 MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE LD Sbjct: 61 VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL ITVY D+EA+++W+KISG S+DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHG- 179 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + +EG+R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q Sbjct: 180 ------SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF LI S++ G N + H++I DHLR+++FLIA+G+LP NEGR YVL Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356 RR++RRA Y LLGY + L+ + P L MG YPELI+AK LIE TL+SE+E Sbjct: 291 RRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSAYMGDIYPELIRAKSLIETTLKSEEE 350 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F TL +G+ LL+ + L + L G+ AFKLYDT+G PLDI DIL + D Sbjct: 351 NFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLYDTYGFPLDITLDILKEK-KINFDQK 409 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A+ EQ+ RARA G G + E++WF L +K+G T+F+GY+ Sbjct: 410 GFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDKFGKTKFVGYE--------------- 454 Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + AIV + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I Sbjct: 455 -------FNEVNDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLI 507 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + I + K +++H IV+ G + ++ +ID + R+ L NHSATHLLH Sbjct: 508 KSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHF 567 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 L ILG HV+Q GS + PD LRFD +H+ +T +L +ED VN +I +NL T+I + Sbjct: 568 VLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLFLVEDMVNSLIRENLSTSTKIQS 627 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI GA AL G KY ++VRVV + S LCGGTHV TGEI L IV+ESS Sbjct: 628 MNQAIDEGAMALFGEKYGNQVRVVKIGD------SRELCGGTHVEHTGEIGLFKIVTESS 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + G+RRIEA+TGQ A +++ + LK +A F+K ++ R+ + +E ++ + Sbjct: 682 VAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEIINRLNILNQERKESEAKIK 741 Query: 776 KR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++ E + +I +NF+SH + + + ++ + LQ++ II K+ Sbjct: 742 NLYKKLISAESIKSTEINGINFVSHAFTNIPANIIREFV--LQQQKPKTIIAFTATEKD- 798 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++I V++DL ++ +A +L ++ + GG +AQ G + NK D AI + S Sbjct: 799 KTVLIIKVSKDLANKISAKELVSIAVE----KNCGGNAELAQ-TGCDSNKIDDAITAICS 853 Query: 895 FL 896 + Sbjct: 854 KI 855 >gi|160902096|ref|YP_001567677.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95] gi|205830174|sp|A9BJE0|SYA_PETMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160359740|gb|ABX31354.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95] Length = 876 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 338/910 (37%), Positives = 530/910 (58%), Gaps = 48/910 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M IR FL FF+K GH+ LPSSSLIP NDP L+FT +GMVPFK IF G+ +P Y Sbjct: 1 MKYFTSEEIRENFLYFFEKKGHKKLPSSSLIP-NDPQLLFTVAGMVPFKPIFWGKVEPTY 59 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +TT QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E Sbjct: 60 TRITTCQKCLRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKKEAIKWAWEFLTEEL 115 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFF 177 L +L+ +VY+ D+EAF +WK + +KI+R +N+W +TGPCGPCSEI+F Sbjct: 116 GLPAEKLWASVYETDDEAFNIWKDDIKIPENKILRFGKEENWWGPAGQTGPCGPCSEIYF 175 Query: 178 DQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D G C + + R++EIWN+VF ++ LP+ +IDTG G ER+ Sbjct: 176 DTGYTENCPDQENCTPACDCGRFVEIWNIVFTEYYSDENGNLSPLPRKNIDTGAGFERIC 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 V Q K +N+D DLFK +I+ +++ G+K+ + V+ +VI DH R+ +FLI++GI+P Sbjct: 236 AVTQGKYDNFDSDLFKEIIEEIQRIFGVKFRVNKSKDVSIKVIADHSRAIAFLISEGIIP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + LL P + +L + +MG YPELI+ + LI++ Sbjct: 296 SNEGRGYVLRRLIRRAVRHGALLEAKGPFLSSILETVIKKMGKIYPELIEKEALIKDISF 355 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F +T+++G+ L+ ++ +L + L G +AF+LYDT+G PLD+ ++IL +G Sbjct: 356 MEEEKFFETMEKGMERLNNIIQNLNNETTLPGKIAFELYDTYGFPLDLTKEILSEKG-IE 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + + +QR AR+ S + T ++I+ + + T+FIGYD L ++ Sbjct: 415 VDEKEFTELMNKQREMARSASGKVEYDTEKQIYKEIDKFLTPTEFIGYDKLSSTE----- 469 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V+ I++ IV +A G ++E+ F +TPFYAE GGQ+ D G Sbjct: 470 ------------------EVQLIIKGNSIVPQAQEGDEIELFFPKTPFYAERGGQVSDKG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ V+ I H +++G ++ + L +D + R+ NH+ATHL Sbjct: 512 VIYNETFEAEVIHVKPIRNEIISHLVKIKKGSIKNGERVFLKVDEKKRKATEKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ++G H+ Q GS + P+ LRFD TH +P+T ++K IE +N+ I + +PV Sbjct: 572 LHSALRKVIGEHIRQAGSYVAPERLRFDFTHYEPLTQDQIKQIEYLINEQIQKAIPVNIY 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + + E+A + AL KY + VR+V + S LCGGTHVS+TGEI L I+ Sbjct: 632 LKSLEEAKSMDVIALFEEKYGEVVRIVEI-----DDFSRELCGGTHVSNTGEIGLFKILE 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ESSI +G+RRIEAITG + ++ + + +L+ L S+ + ++E I + + + Sbjct: 687 ESSISSGVRRIEAITGFESLNYATELESIMTNLSKMLDSSRDQIPDKIEGILKTIKNQEK 746 Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + QL +++ I + + ++ + D L +K+ G+++L Sbjct: 747 EIKQLQFQLATKNIERLAETPQIIEGEKVVVAQLENLEKDVHANTADILLQKLGRGVVIL 806 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S ++ S+++ V++D +F+A ++AR A LGGGG GG P AQ+GG NK + Sbjct: 807 FNKSNNEQVSLVVKVSKDTSKKFHAGNIARKIASYLGGGG-GGGPTFAQAGGKYANKVKE 865 Query: 888 AIAGVASFLK 897 I + F++ Sbjct: 866 VIEHINDFME 875 >gi|16803544|ref|NP_465029.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|47097201|ref|ZP_00234765.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|224501556|ref|ZP_03669863.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-561] gi|254898330|ref|ZP_05258254.1| alanyl-tRNA synthetase [Listeria monocytogenes J0161] gi|254912178|ref|ZP_05262190.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818] gi|254936506|ref|ZP_05268203.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900] gi|20532249|sp|Q8Y722|SYA_LISMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|16410933|emb|CAC99582.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|47014415|gb|EAL05384.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|258609100|gb|EEW21708.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900] gi|293590151|gb|EFF98485.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818] Length = 879 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR+RARA + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|218246265|ref|YP_002371636.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801] gi|218166743|gb|ACK65480.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801] Length = 879 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 339/906 (37%), Positives = 512/906 (56%), Gaps = 48/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+F+ H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P Y T Sbjct: 9 TGAQIRDKFLQFYASKHHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKNPDYPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI +W+L T+ F+L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V++ED+EAF++W+ G+ +I R+ DNFW TGPCGPCSE+++D Sbjct: 124 ENIVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ G+ Y+ + + +VI DH+RS +IADGI +N RGY Sbjct: 243 NYETDLIFPIIETAAKIAGINYKNTDEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + S YP + + + I+ L+ E+ RF Sbjct: 303 VLRRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL +++ K+ ++G AF LYDT+G PL++ Q+I +GL +D+ F Sbjct: 363 ETLERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQ+ R++A + T + L E T+F+GY + Sbjct: 422 AAMKEQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYSSPQ--------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + V+A++ G+ VE A +G +V+++ DQTPFY E+GGQ+GD G GD + Sbjct: 466 --------IIAKVQAVLVAGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDNL 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV KK GIFVH VERG + E ++ TID RR++ +H+ATHLL AL Sbjct: 518 VVRIEDV-KKESGIFVHFGRVERGTIAVENTVTATIDRACRRRVQAHHTATHLLQAALKK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +SQ GS + D LRFD + ITSAEL+ IE +N IA+ IM+ E A Sbjct: 577 VVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEKA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY+ VRV+ V S LCGGTHV +T EI L I+SES I +G Sbjct: 637 KAKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G +L ++ +K L K+ + R+ + E + Q K Sbjct: 692 VRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVKQ 751 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L V + + + ++D K L++ + LQ+K+ ++L + E Sbjct: 752 ELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSED 811 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K ++ +E + + A AK+ GGGG GGRP++AQ+GG + NK +A+ Sbjct: 812 KVVLVAAFSEKVHKEKQLMAGKFIGEIAKICGGGG-GGRPNLAQAGGRDANKLPEALLIA 870 Query: 893 ASFLKK 898 L + Sbjct: 871 KQQLIE 876 >gi|222824071|ref|YP_002575645.1| alanyl-tRNA synthetase [Campylobacter lari RM2100] gi|222539293|gb|ACM64394.1| alanyl-tRNA synthetase [Campylobacter lari RM2100] Length = 845 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 346/896 (38%), Positives = 508/896 (56%), Gaps = 58/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +LEFF+ GHE+ PSS L+P +D TL+FTN+GMVPFKNIFTG+ T+ Sbjct: 2 DIRKEYLEFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKNIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEILKLPKER 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EA+ LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHESDDEAYNLWQK--HIEKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGAEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER++ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVSAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I++ ++ G Y + ++RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIIESIAKLCGKTYIYESGASYRVIADHIRSSVFLLAQGVGFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 IMRRA+ + LLG M L+ +C MG Y L + K I+E ++ E+ERF T++ Sbjct: 299 IMRRALRHGYLLGLKRAFMYELVDVVCELMGGHYTYLNEKKEFIKEQIKLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L +I +G+VAFKLYDT+G PLD+ QD+L + L+ +D FN+ ++ Sbjct: 359 NGIEIFNEELKKT--KDIFSGEVAFKLYDTYGFPLDLTQDMLREKNLS-VDEAKFNELMQ 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ+ RA+A G G + L EK+G F GY+ Sbjct: 416 EQKDRAKASWKGSGDKAVSGDFKVLLEKFGKNTFSGYENYE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + + AI+ + +I+ EA +G ++ ++TPFYA +GGQ D G + + Sbjct: 457 ----EKTKIIAILDENFKIITEAKAGDIAWLMLEKTPFYATSGGQSADIGFINENEVLDT 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + + L+T ++ ID + R Q++ +HSATHLLHHAL ILG Sbjct: 513 QKFFDINLSQVKLKQ------NLKTNDEVLACIDTKKREQIARHHSATHLLHHALREILG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SH+SQ GS + + LRFD TH K + ELK IE VN I Q I++ +A S Sbjct: 567 SHISQAGSLVEHNKLRFDFTHPKALNKEELKQIEALVNTYIMQANEAKVEILSLNEAKKS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY ++VRV+++ S CGGTHV ++ EI YIV ES + AG+RR Sbjct: 627 GAIALFSEKYQEKVRVLTLGA------SKEFCGGTHVKNSSEIGSFYIVKESGVSAGVRR 680 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A ++ ++L LK +++ V ++ E L+ + Sbjct: 681 IEAVVSKAALDYVNENLKELNQAKEELK--IHDILSYVAKLKNEIVSLKNELKN----SS 734 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +LS ++ + + I DS ++K+++D + K + +++L+ KE K + V Sbjct: 735 KTELSSKELNGIQYCVQKI---DSGDIKTMIDEFKNKF-NKVVILLLQEKEGKIIIAAGV 790 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + A L + A++L GG GGGR A +GG + +K +QA+ +++ Sbjct: 791 KD---ASLKAGALVKEIAQML-GGNGGGRDDFATAGGKDTSKIEQALDHARKIIEE 842 >gi|297584730|ref|YP_003700510.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10] gi|297143187|gb|ADH99944.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10] Length = 877 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 334/915 (36%), Positives = 515/915 (56%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKRLTSAEVRQMYLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT Sbjct: 61 PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAILWAWEFLTDKR 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +L +T+Y ED+EAF++W + GL ++IIR+ +NFW + E GPCGP +EIF Sbjct: 117 WIGFDADKLAVTIYPEDDEAFEIWHQKVGLPKERIIRL--EENFWDIGE-GPCGPNTEIF 173 Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ER++EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDPNDPEMFPGGENERHLEIWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ N+D DLF LI+ +E+++G Y ++ +VI DH+R+ +F I+DG Sbjct: 234 MVSVIQDARTNFDTDLFVPLIEETERLSGKTYGEDDQADTAFKVIADHIRTVTFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ LG + M L+P + + M YPE+ + I + Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLGLDDAFMYKLVPVVGSIMTEFYPEVGEKADFIAKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E++RF +TL G+ ++ ++ ++ ++G+ FKLYDT+G P+D+ ++ + Sbjct: 354 VKTEEDRFHETLQDGMNMIVNLIKEAKENGQTDISGEAVFKLYDTYGFPVDLTEEYVEEA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F++ ++ QR RAR+ GS + E+ A+ F GY L+ Sbjct: 414 GLT-VDKAGFDKEMKAQRDRARSARQDSGSMQLQDEVLGSIEE--ASSFTGYTHLQD--- 467 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V AIV+ G V+ A G +++ + +TPFYAE+GGQL Sbjct: 468 --------------------EGTVSAIVKDGSRVDFATEGDEIQFMLTRTPFYAESGGQL 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +G+ +++ DV+K G +H + G L+ ++ + + R+ + NH+ Sbjct: 508 ADQGTVHAEGVTVEVDDVKKAPNGQHLHIGKISEGTLKAGAAVTAEVKERMRKAIIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + D LRFD +H +T E+ +E VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGEHVNQAGSSVGDDRLRFDFSHFGQMTEEEVNRVEAIVNEKIWASIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + + A GA AL G KY VRVV V G +S LCGG HV +T EI L Sbjct: 628 VEIMNTSIDHAKEMGAMALFGEKYGKEVRVVQV-----GEYSLELCGGCHVQNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 +VSE+ I AG+RR+EA+TG+ A + Q L A+ LK +V RV+++ ++ R Sbjct: 683 KLVSEAGIGAGVRRVEAVTGKGAYEFMNHQLAYLDEAAAKLKTKVADVPYRVDQLQKQLR 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + +L+ + I + + + D L+ D L++KI SG Sbjct: 743 EKDKEVESLSAKLSNLEAGSVLDDVETIEGIPVLYKQVEAKDMNTLRKTADTLKEKIPSG 802 Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II++ ++ + K S++ V++D + + ++A +L + A + GGGG GGRP MAQ+GG N Sbjct: 803 IIVIGAVTGD-KVSIVASVSKDYVTEGYHAGNLVKEIAGMCGGGG-GGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLK 897 + +A+ V +K Sbjct: 861 DALPEALKKVPELIK 875 >gi|294793973|ref|ZP_06759110.1| alanine--tRNA ligase [Veillonella sp. 3_1_44] gi|294455543|gb|EFG23915.1| alanine--tRNA ligase [Veillonella sp. 3_1_44] Length = 871 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 332/909 (36%), Positives = 496/909 (54%), Gaps = 55/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QK +R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTCQKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+ Y N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR RAR + + LK++ Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ +S V + + E ++ A G ++ V+ TPF+AE GGQLGDTG + Sbjct: 449 ----ELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFIGSFRLTSEAG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A ++ +AS LK + R+ ++ E ++ Sbjct: 680 IGSGVRRIEAITGRAALEAAKQDRLTIERMASELKTKSPQIEERLHQVLTEAKETVKELE 739 Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +++ + + DV F+ + EL+ + D K+ SG++++ Sbjct: 740 QIRKEVSAAGAADIIAGKVMVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++D++ + A ++ + +A+ + GG GGGRP MAQ+GG K +A Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858 Query: 889 IAGVASFLK 897 + LK Sbjct: 859 LKAGGEALK 867 >gi|224500670|ref|ZP_03669019.1| alanyl-tRNA synthetase [Listeria monocytogenes Finland 1988] Length = 879 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR+RARA + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPKEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|19704032|ref|NP_603594.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22096188|sp|Q8RFJ8|SYA_FUSNN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|19714224|gb|AAL94893.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 867 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 330/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ + Sbjct: 60 VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGNYFKKEAIKWSWEFVTEVLKI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+A V+ Sbjct: 176 IQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q KTNN++ DL +++ + ++TG +Y + +VI DH R+ +FL+ DG++P+NE Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+ Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEIAYPDLRKNVENIRKIVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TLD+G+ L++ + +L L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLTNGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVIVL 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +AR+ + + +KYG T+F GY+ + R Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEKTEDEGKLLSLR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + K ++FD+TPFYAE+GGQ+GD G Sbjct: 475 EAKDR-------------------------------KYLLIFDKTPFYAESGGQVGDQGK 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D ++ DVQ K + IF+H +E+G+ + L +D R + NH+ATHLL Sbjct: 504 IYSDNFAGKVLDVQ-KQKDIFIHTVKLEKGMPEENKTYKLEVDVVKRLDTAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL I+G+HV Q GS + + LRFD +H + +T +L IED VN I + + VV Sbjct: 563 HKALREIVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSH 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I SE Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVHGF-----STELCGGTHIDNIGKIGLFKITSE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA TG A + + LK++ LK + N+V +VE+ E + + Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADILKNIEQKLKATNSNLVEKVEKNLETLKDTEKE 737 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + + +I V + + +++L++++D ++ + II+L Sbjct: 738 LEILKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K A Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVREIIE 863 >gi|21673007|ref|NP_661072.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS] gi|41018235|sp|Q8KG04|SYA_CHLTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21646071|gb|AAM71414.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS] Length = 885 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 342/933 (36%), Positives = 499/933 (53%), Gaps = 85/933 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR +FL+FF H ++ S+ +IP DPTL+FTN+GM FK++F G+ Y Sbjct: 1 MNSREIRQSFLDFFAGKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+L+T+ + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTEVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +DEE+FKLW+ + + I++ DNFW M ETGPCGPCSEI D Sbjct: 121 KERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GG P + R IE+WNLVF+Q+++Q LP+ +DTGMG ER+A VLQ K+ Sbjct: 181 DGSGG-PLVNVGDHRVIELWNLVFIQYDRQADGTLVPLPQKHVDTGMGFERVAAVLQGKS 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F L ++TG Y + + + RVI DH R+ +F ++DG +P NEGR Sbjct: 240 SNYDSDVFAPLFDRITELTGTVYTASLDSPSDIAMRVIADHCRTLTFALSDGAMPGNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ YA LG EP++ ++ L MG +PEL + + +E+ +R+E+E Sbjct: 300 GYVLRRILRRAVRYAGTLGCHEPIIYKMVEVLVRTMGDVFPELEKQQATVEKIIRAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL RG + + V++ + ++G AFKLYDT G PLD+ + + GL GID Sbjct: 360 FLVTLGRGTEIFNEVVADMKTAGSTTISGADAFKLYDTFGFPLDLTRLMAAEVGL-GIDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + EQ++RAR G + + T F+GYD+L Sbjct: 419 AGFEHCMMEQKTRARMDRKGKMQMQDDGGEWQWFAPEAPTTFVGYDMLETEAT------- 471 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +V VSG K+ +V DQTPFYAE+GGQ+GD G Sbjct: 472 -------------------------LVAARVSGDKLLMVLDQTPFYAESGGQVGDHGTLE 506 Query: 536 GDGIRLQITDVQKKAEGIFV-----------HHAIVERGILRTEMSLVLTIDYQNRRQLS 584 G RL +TD +K E I +S+ +D R Sbjct: 507 TAGYRLDVTDTRKDGEQIVHVVTSAHDKVRDCAVTPADVSFDGVVSVKAAVDRDRRVATE 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS +TP+ LRFD +H +++ EL+ +E VN I Sbjct: 567 RNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSAEELEQVEHEVNAEIR 626 Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + V + E+A+A GA A G KY DRVRVV V S LCGGTHV + G Sbjct: 627 KAASVTKHADVPYEEALALGALAFFGDKYADRVRVVEVPG-----ISIELCGGTHVGNIG 681 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEE 762 +I ++ IVSESS+ AGIRRIEA+TG A + L + L+ + + LK+ G +++E Sbjct: 682 QIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRDLQEIKNLLKLKADEEAGPKIKE 741 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE + L + +L ++ L+ ++ M+ + V EL+ AL+ Sbjct: 742 LLEEKKALDKQLQESRLAGLLDRLAASLAGGEEVNGCRIMTERLDGVSGDELRQAAVALR 801 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLG-------GGGG 868 +++ + +L G++ + K S++ +++ + + +A L + +A + Sbjct: 802 ERVPCAVGLLCGVA-DGKVSLVAFASDEAVKSLKLDAGKLVKEAAASVKGGGGGKL---- 856 Query: 869 GGRPHMAQSGGPNGNKADQAIA----GVASFLK 897 +A +GG D+AI V S L+ Sbjct: 857 ----ELATAGGKEPAGIDKAIEVFVASVKSALQ 885 >gi|302550143|ref|ZP_07302485.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736] gi|302467761|gb|EFL30854.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736] Length = 890 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 337/924 (36%), Positives = 506/924 (54%), Gaps = 64/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY +D+EA ++W ++ G+ ++I R+ DN+WSM GPCGPCSEI Sbjct: 116 GYGLDPERLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+ + + + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYVRGEGTGKDSFEILGELPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I + ++TG++Y + + RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVINKATELTGVRYGDAHDSDVSLRVVTDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDTVIEMMGQQYPELITDRERIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F KTL G +LD + + +L GD AF L+DT G P+D+ ++ Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVTDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + ++ GAT FIGY Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADQAGATDFIGYTDTES 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + I+ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + G ++I D QK G++VH +V+ G + +ID + R ++ Sbjct: 511 GQIGDTGKIKVDTGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRTAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVQAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + + K + + ++ + DV ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGIAVVTGQVPDGTTADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 +IQ G ++ L ++ K +I E +R A DL R +AK LGGGG GG+P + Sbjct: 806 RIQGGRPAVVALFAVAN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ GG N A+ V + + Sbjct: 864 AQGGGQNPAAVGDAVDAVERLVAE 887 >gi|295706696|ref|YP_003599771.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319] gi|294804355|gb|ADF41421.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319] Length = 877 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 360/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+FF++ GH++ PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +L +TV+ EDEEAFK+W + G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDADKLSVTVHPEDEEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDLTDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ N+D DLF +I+A+E ++G KY N+ +VI DH+R+ +F + DG Sbjct: 234 MVSVIQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I+ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ + + G+ F+LYDT+G P+++ ++ Sbjct: 354 VKNEEERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + ID F + +E QR RARA S + L E A++F+GYD Sbjct: 414 NMK-IDHAGFEREMEAQRERARAARQDSSSMQVQGGV--LGEVTVASEFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 N V ++V+AI+ GE+V+ A +G + +V+ TPFYAE+GGQ+ Sbjct: 464 ----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G ++ DVQK G V V G L + T+D +NR + NH+ Sbjct: 508 ADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGETYTATLDEENRSAIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG+HV+Q GS +T D LRFD +H +T EL+ IE VN+ I ++ Sbjct: 568 ATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSIS 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V ++A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q LK A+ +K + ++VGRVE + EE R Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEIR 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + +L + I VN ++ ++ D L++++D L++K++S Sbjct: 743 NLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLESA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L E K +++ VT+DL+ + +A L + A + GGGG GGRP MAQ+GG + Sbjct: 803 VIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGG-GGRPDMAQAGGKDA 860 Query: 883 NKADQAIAGVASFLK 897 ++ ++A+ V ++K Sbjct: 861 SQIEKALGTVEEWVK 875 >gi|260438422|ref|ZP_05792238.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876] gi|292809008|gb|EFF68213.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876] Length = 884 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 340/910 (37%), Positives = 507/910 (55%), Gaps = 52/910 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 6 VNELRRKYLEFFESKGHLKMNSFSLVPQNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D+DNVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK +++ Sbjct: 66 CQKCIRTG----DIDNVGKTARHLTFFEMLGNFSFGDYFKHEAINWSWEFLTKVIGMEED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI-----TTNDNFWSMAETGPCGPCSEIFFD 178 RLY ++Y +D+EAF +W K G+ A++I R DNFW GPCGPCSEI++D Sbjct: 122 RLYPSIYADDDEAFNIWTKEVGVPAERITRFYRDENGDCDNFWEHG-AGPCGPCSEIYYD 180 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +G G P + +R++E+WN VF QFE L + +IDTGMGLER+A V Sbjct: 181 RGIKYGCGKPDCKVGCDCDRFMEVWNNVFTQFESDGHHHYTELKQKNIDTGMGLERLAVV 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +DID K + ++ G+ Y + V+ R+I DH+RS +F+ +DGI+P+N Sbjct: 241 VQDVDSVFDIDTMKAIRDKICELAGVTYMEDEHKDVSIRLITDHIRSVTFMASDGIIPSN 300 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + R LG + L + YPEL + + LI + L +E Sbjct: 301 EGRGYVLRRLLRRAARHGRTLGIDGLFLAKLATTVIDSSKDGYPELDEKRELILKVLTTE 360 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E F KT+D+GLV+L + S L L+G+ AF+LYDT+G P+D+ +IL +G Sbjct: 361 EENFNKTIDQGLVILSDLESRLVKEGKTCLDGEDAFRLYDTYGFPIDLTNEILEEKGFT- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ FN A+ +Q+ AR + + + ++F+GYD L Sbjct: 420 VDMDGFNNAMNKQKETARGARKETNYMGADATVYDKIDTRITSEFVGYDTLE-------- 471 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + +I + G + ++ ++TPFYA GGQ GDTG Sbjct: 472 ---------------TESEITVLTTSEDITDTLAEGMEGTIIVNKTPFYATMGGQQGDTG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 I +G ++ D + G H V G + + LT+D + R + NHSATHL Sbjct: 517 VIICNGSVFEVIDTIRLKGGRVGHVGKVTAGSFKVGDKVTLTVDEKKRIDTAKNHSATHL 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q GS +TPD LRFD TH +P+T E++ +E VN+ I +++ V T+ Sbjct: 577 LQEALRIVLGNHVEQAGSLVTPDRLRFDFTHFQPMTEEEIEKVEAIVNEQIEKSIDVETK 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++ EDA +GA AL KY D VRVV + G S CGGTHVS+TG I IVS Sbjct: 637 VLAIEDAKKTGAKALFNEKYGDTVRVVCM-----GDFSKEFCGGTHVSNTGLINSFKIVS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+TG ++ ++K + K + NV ++ + E + L Sbjct: 692 ESGVAAGVRRIEALTGNGVFAYYKDIEKKYNDICKAAKATPANVEEKIAHMQAEIKSLNS 751 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K + E L + V F++ +++VD EL+++ D L+ KI SG+++L Sbjct: 752 EIESLKNKAANEALGDVLNQAEDVNGVKFLAVKLNDVDMNELRNLSDDLKSKIGSGVVVL 811 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 K ++++ T+D++ +A ++ + +A +GGGG GGRP+MAQ+GG N + Sbjct: 812 ASAMGSDKVNLIVTATDDIVKAGVHAGNIIKSAAPCVGGGG-GGRPNMAQAGGKNPAGIE 870 Query: 887 QAIAGVASFL 896 +A L Sbjct: 871 KAFETAKETL 880 >gi|225572273|ref|ZP_03781137.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM 10507] gi|225040257|gb|EEG50503.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM 10507] Length = 868 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 352/900 (39%), Positives = 513/900 (57%), Gaps = 48/900 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 FLEFF+ GH L S SLIP ND +L+ NSGM P K FTG E P + VTT QKC+R Sbjct: 1 MFLEFFESKGHLALKSFSLIPQNDKSLLLINSGMAPMKPYFTGAEIPPRKRVTTCQKCIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ LD RLY ++ Sbjct: 61 TG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPDRLYPSI 116 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 Y +DEEAF++W K G++ ++I R DNFW GPCGPCSEI++D+GE PG Sbjct: 117 YLDDEEAFEIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCKKPG 175 Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 + +RYIEIWN VF QFE + L + +IDTGMGLER+ATV+QE + +D+D Sbjct: 176 CTVGCDCDRYIEIWNNVFTQFENDGEGHYTELEQKNIDTGMGLERLATVVQEVDSIFDVD 235 Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 L ++ G++Y + V+ R+I DH++SS+F+I+DGI+P NEGRGYVLRR++ Sbjct: 236 TNCALRNRVCELAGVEYLKDEKTDVSIRLITDHVKSSTFMISDGIMPTNEGRGYVLRRLI 295 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA + RLLG M L + YPEL + K I L +E+ +F KT+D+G Sbjct: 296 RRAARHGRLLGIDGKFMAKLSATVIEGSKDGYPELEEKKDFIFNVLNNEENQFNKTIDQG 355 Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L + + K ++L G+ AFKLYDT+G PLD+ ++IL +G +D F +A+E Sbjct: 356 LRILADLEEKMEKAGTKVLTGEEAFKLYDTYGFPLDLTKEILEEKGR-QVDEEGFQKAME 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR +AR + + + T+F+GY+ L Sbjct: 415 IQRKQAREAREVSNYMGADATVYDEIDPSVTTEFVGYEHL-------------------- 454 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + + + EIV + GQ+ V +TPFYA GGQ GDTG Q+ Sbjct: 455 ---AFESEITVLTTEKEIVSSLMEGQRGTVFVKKTPFYATMGGQEGDTGLISTANGVFQV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 + K G + H + G+L + + L ++ Q RR NHSATHLL AL +LG+ Sbjct: 512 EETIKLRGGKYGHVGHMVSGMLSVQDVVRLEVNVQGRRDTEKNHSATHLLQKALKVVLGA 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS +TPD LRFD H + +T E++ +E VN I + LPV T IM+ E+A +G Sbjct: 572 HVEQKGSLVTPDRLRFDFAHFQAMTPEEMEKVEKLVNQEIQEALPVRTDIMDIEEAKKTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY++ VRVVS+ G S LCGGTHVS+T +I+L +VSES I AG+RRI Sbjct: 632 AMALFGEKYDEEVRVVSM-----GEFSKELCGGTHVSNTSQILLFKLVSESGIAAGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+TG + + L A K S G + ++ + E + L + K ++ Sbjct: 687 EALTGNGVMEYYKNLESLLNQAAKAAKTSTGELSDKIFHMQNEIKALHSENESLKSKMAQ 746 Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L ++ V ++ + VD L+ + D L++K++ G+++L+ + K ++ Sbjct: 747 DSLGDVMNQVTEVKGVKLLAVKLENVDVSGLRDLGDQLKEKLEEGVVVLITV-NSGKVNL 805 Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 L + T+ + +A +L + +A ++GGGG GGRP+MAQ+GG + K ++A+ + L+ Sbjct: 806 LAMATDGAMKQGAHAGNLIKAAAAIVGGGG-GGRPNMAQAGGKSPEKVEEALQKIPEILE 864 >gi|325679252|ref|ZP_08158839.1| alanine--tRNA ligase [Ruminococcus albus 8] gi|324109038|gb|EGC03267.1| alanine--tRNA ligase [Ruminococcus albus 8] Length = 885 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 308/906 (33%), Positives = 471/906 (51%), Gaps = 44/906 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++++ +R ++L+FF+ G S L+P ND +L+ +GM P K FTGQE P + Sbjct: 4 TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T RH T+FEMLGNFSFG YFK+ AI AW+ +T L Sbjct: 64 TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+++VY++D+EA K+W + G+ D I+R+ DNFW GPCGPCSEI+FD+GE Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+E WNLVF QFE+ L + +IDTGMGLER+A ++Q Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +D+D K + ++ G +Y E V+ RVI DH+R+ +FL +DG+LP+NEGR Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGKEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + +LLG + L+ + Y EL + I + L +E++ Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F T+DRG+ +LD + L + L+G+ FKL DT+G PLD+ ++IL +GL D Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLTA-DE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + +E+QR AR G E+ F +K +T+F GYD Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYDKTED---------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + ++ + +++E A V +V DQT FYAE+GGQ GDTG Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQAGDTGVIE 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++ D QK G F V G L ++ +D R NHS HLL Sbjct: 516 TATGKAEVLDTQKAVGGKFALKVKVTEGALTKGQAVTFKVDKAKRLATMRNHSCAHLLQS 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL T+LG HV Q G + LRFD +H + +T+ E +E VN I L + M Sbjct: 576 ALRTVLGEHVHQAGQLVDSQRLRFDFSHFEAMTADEKAQVEALVNKYIFDALDITMEEMP 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A GA AL G KY + VRVV++ S CGGTH+ +T +I L I+SE+S Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMGDR-ANAASIEFCGGTHLDNTSKIGLFKIISENS 694 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RR+EA+TG L E + A LK + +V R + +E + L+ Sbjct: 695 VASGVRRVEAVTGTGVLELLNSNIETINKAAETLKLNNPAELVSRCGAVMQEIKGLEKER 754 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + + V+ + ++ V L+ + D L+ + +I+++ Sbjct: 755 DSLETAMANMRAKSVLENAVDVKGVSVATAQLNGVKPDVLRKMADELKAANDN-VIVVMT 813 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K ++++ +D + + +A +A A L G GGGRP A +G + + A Sbjct: 814 TVNGDKGNIVVAAGKDAVAKGAHAGKIAGKIAA-LTNGKGGGRPDSAMAGVGDVSLIASA 872 Query: 889 IAGVAS 894 + A Sbjct: 873 LEKAAE 878 >gi|262048613|ref|ZP_06021496.1| alanyl-tRNA synthetase [Staphylococcus aureus D30] gi|259163260|gb|EEW47819.1| alanyl-tRNA synthetase [Staphylococcus aureus D30] Length = 876 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 339/914 (37%), Positives = 509/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY+D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYSDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|15894955|ref|NP_348304.1| alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|20532257|sp|Q97IG3|SYA_CLOAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15024640|gb|AAK79644.1|AE007677_6 Alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|325509092|gb|ADZ20728.1| alanyl-tRNA synthetase [Clostridium acetobutylicum EA 2018] Length = 881 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 324/911 (35%), Positives = 512/911 (56%), Gaps = 50/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR ++L FF+K H LPS SLIP ND +L+ N+GM P K FTG + P V Sbjct: 4 MGLNDIRESYLSFFEKKEHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFTGLQTPPKTRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++N+G+T+RH TFFEMLGNFSFG YFKE I AW+ +T+ Sbjct: 64 TTCQKCIRTG----DIENIGKTSRHGTFFEMLGNFSFGDYFKEEVISWAWEYITEVLKFP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + R+YIT+Y +D+EAFK+W + +G+ +I R DNFW +GPCGPCSE+ FD+ E Sbjct: 120 KDRIYITIYLDDDEAFKIWTEKAGVDPSRIFRFGKEDNFWEHG-SGPCGPCSEMHFDRRE 178 Query: 182 CIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 ++ + IE WNLVF QF++ L +IDTGMGLER+AT++ Sbjct: 179 KPDLIKTREKFIELQDKDEVIEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q + ++ID + ++ A ++ +KY N V+ R+I DH+RS +F+I+DGILP+NE Sbjct: 239 QNTDSIFEIDTIREVLDAVCKICNVKYGENHKNDVSLRIITDHIRSVTFMISDGILPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + + L + AY EL + + I+ + E+ Sbjct: 299 GRGYVLRRLLRRAARHGKTLGIEKTFLCGLCDVVIKNSKGAYKELEEKQDYIKNVIEIEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 +RF +TLD G+ +L + L ++++G+ AF+LYDT+G P+++ Q+IL +G I Sbjct: 359 KRFDETLDSGMEILKNYIDELSLENKKVMSGEKAFRLYDTYGFPVELTQEILEEKG-IEI 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F+ +E+Q++RAR E + T+F+GY+ Sbjct: 418 DMNDFHSEMEKQKNRARDAREESNYMGKEIKLIDKLPESVTTKFVGYNSTSTD------- 470 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V+ +++ E V G+ VV ++TPFYAE GGQ+GD G Sbjct: 471 ----------------SKVEVLIKDDEFVSTINEGESGIVVTEETPFYAEMGGQIGDKGI 514 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G ++ D + G +H V +G + ++ L ++Y+ R+ + NH+ATH+L Sbjct: 515 IFGKNGEAKVVDCKNNISGKIIHIVQVVKGSIEKNENVTLEVNYKKRKDICKNHTATHML 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL ++GSH++Q+GS + + LRFD TH +T E+ +E VND I V T I Sbjct: 575 QAALKKVVGSHINQSGSYVDNERLRFDFTHFTALTDEEILKVEAMVNDEIMAAYDVKTDI 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A +GA AL KY +RVRVVSV G S LCGGTHV+++GEI L I+SE Sbjct: 635 MSVDEAKKTGAMALFDEKYGNRVRVVSV-----GDFSRELCGGTHVNNSGEIGLFKIISE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AGIRRIEAITG+ A + D ++++ LK S+ +++ ++ + E ++ + Sbjct: 690 SGVAAGIRRIEAITGKEAVRYTEENDNLIRNIEQELKCSKKDILNKINQYHSELKEKEKE 749 Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L S +++ V +++ + + L+ + D ++ KI G+++L Sbjct: 750 INILKGKLASGFEENILSSVKEVSGVKYVASEVKGISGDTLRELCDKVRNKIDDGMVLLA 809 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 E K + + +++ + + + + + A + GG GGGRP MAQ+GG +G K + Sbjct: 810 SKDGE-KVQFVAMASKNAVKKGVHCGKVIKEVASMC-GGNGGGRPDMAQAGGKDGEKLET 867 Query: 888 AIAGVASFLKK 898 A+ V + ++K Sbjct: 868 ALKEVGNIMEK 878 >gi|253733131|ref|ZP_04867296.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|253728887|gb|EES97616.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|329733217|gb|EGG69554.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193] Length = 877 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT Sbjct: 61 KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 K ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EI Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173 Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 F+D+GE P E ERY+E+WNLVF +F LP +IDTGMGLE Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHS Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGTTVSAEVNQNDRRDIQKNHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742 Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860 Query: 883 NKADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 ENISKSLSFIKDYIK 875 >gi|261415443|ref|YP_003249126.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371899|gb|ACX74644.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 882 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 341/911 (37%), Positives = 508/911 (55%), Gaps = 53/911 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +F++FF+ GH + SS ++P +DPTLMFTN+GM FK IF G ++ Sbjct: 5 MTSAQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + L Sbjct: 65 CNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLP 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 + RL+ TVY +D+EA+++WK +SGL D+I+R + NFW M +TGPCGPCSEI +D+G Sbjct: 125 KERLFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGD 184 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E + G + E +RYIEIWN VFMQ+E+ + L ++D GMG ER+ Sbjct: 185 LATQAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDIGMGFERICA 244 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPAN 294 +LQ KT+NYD D+F +I +++G+ Y HRVI DH+R+ SF IADG LP+N Sbjct: 245 ILQGKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA +ARLLG +P + L+ L MG A+PE+ + K + ++SE Sbjct: 305 EGRGYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F +TLD GL + + L K + + GD F LYDT+G P D+ + +GL ID Sbjct: 365 EESFIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGL-LID 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + + + EQ+ RARA+ + + W E +T F+GY+L + Sbjct: 424 EEGYEKCMNEQKERARANMKQGINTMGTEGWTQYSE--ASTNFVGYELSACETKVVR--- 478 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + V +V + +PFYAE GGQ+GD G Sbjct: 479 ---------------------WREDKGVLS--------IVLETSPFYAEMGGQVGDKGTL 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATH 591 + + +Q+ D K + V +G + T+D R + NHSATH Sbjct: 510 VSADLEIQVFDT-VKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG+HV Q GS ++ + LRFD +H +T+ E++ +ED VN I + LPV T Sbjct: 569 LLQAALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ ++A ASGA AL G KY D+VRVV + G S LCGG HV +TG I ++ IV Sbjct: 629 DVMDVDEAKASGAMALFGEKYGDKVRVVKMGD-AGVEFSRELCGGLHVQNTGNIGMVKIV 687 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SESS+ AG+RRIEA++G+ A S L + L +L L+ V+ R+++ + + + L+ Sbjct: 688 SESSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLE 747 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKIQSGIIML 827 KL+L + +N + + ++ K+++D +Q K+ + + Sbjct: 748 KSLQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEKYKNLLDGVQNKLDVDSVAV 807 Query: 828 VGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + S+ ++V +++ A D+ R AK G GGGRP AQ+G K Sbjct: 808 IANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKACN-GKGGGRPDRAQAGTREPEKIA 866 Query: 887 QAIAGVASFLK 897 +AIA ++++ Sbjct: 867 EAIANANNWIR 877 >gi|229013606|ref|ZP_04170737.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048] gi|228747665|gb|EEL97537.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048] Length = 880 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 352/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 M +++Q+ N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F +E+QR RARA + S + L E A++F+GY Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T S V A+V+ GE + + ++ +++ D TPFYAE+GGQ Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQADEEGQLMLDVTPFYAESGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ILG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL G KY D VRVV V G +S LCGG HV +T I + Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV+ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L+ + S + VN ++ ++ D L+++MD L+ K++S Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L + + K ++L VT+DL+ ++A L + A GGGG GGRP MAQ+GG N Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860 Query: 882 GNKADQAIAGVASFLK 897 + ++A+A V ++K Sbjct: 861 PAQVEEALAFVQEYVK 876 >gi|302561723|ref|ZP_07314065.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000] gi|302479341|gb|EFL42434.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000] Length = 890 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 338/921 (36%), Positives = 509/921 (55%), Gaps = 62/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLDAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G + + RY+EIWNLVFMQ+E+ + + LP +IDTG+GL Sbjct: 176 YDRGPEFGAEGGPAVNDE-RYVEIWNLVFMQYERGEGTGKDDFEILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I + ++TG++Y + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIARATELTGVQYGDAHASDVSLRVVTDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F KTL G +LD + + +L GD AF L+DT G P+D+ ++ Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAITDTKSAGSAVLPGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR +A+A +L +G + + + ++ GAT FIGY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQREKAKADALSKKTGHADLGAYREIADRAGATDFIGYTATEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V I+ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTVVGILVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG D ++I D QK G++VH +V+ G + +ID + R ++ Sbjct: 511 GQIGDTGRIRADNGAVIEIRDCQKPVPGVYVHKGVVQVGEITVGARAHASIDGRRRTAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L LK + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVNQLTELLKGRSEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + + K + + ++ + DV ++ + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVAVVTGQVPDGTTPDDLRKLVLDVRG 805 Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ G +++ + K +I + +R A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGGRAVVVALFTVNNGKPLTVIATNDAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG N +A+ V + Sbjct: 865 QGGGQNPAAVGEAVDAVERLV 885 >gi|172036637|ref|YP_001803138.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142] gi|205830042|sp|B1WYQ5|SYA_CYAA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171698091|gb|ACB51072.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142] Length = 879 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 333/906 (36%), Positives = 503/906 (55%), Gaps = 48/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+F+ ++ H++LPS+SL+P DPT++ T +GM+PFK IF GQ++P + T Sbjct: 9 TGNQIRDRFLQFYAQHNHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKQPDFPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYRLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V+++D+EAFKLW+++ G+ +I R+ DNFW TGPCGPCSE+++D Sbjct: 124 ENIVVSVFEKDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFM++ + + L +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GEDNIDLEDDSRFIEFYNLVFMEYNRDAEGNLAPLQNKNIDTGMGLERMAQILQKVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + + Y+ + +VI DH+RS +IADGI +N RGY Sbjct: 243 NYETDLIFPIIETAANIANIDYQKATEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + +AYP++ + + I+ L E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGIEGQFIKQVAETAIELSENAYPQVRERESFIKGELEREETAFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RG LL ++ ++G AF LYDT+G PL++ Q+I L F Sbjct: 363 KTLERGEKLLAEIIEKTETQGQISGVDAFTLYDTYGFPLELTQEIAEESNLTVNIEE-FE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +Q+ R++A + T + L E T F+GY L+ Sbjct: 422 AEMRQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTAFLGYTDLQ--------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G G+ + Sbjct: 466 --------LTAKVEAVLIQGKTVDTAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGENL 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ DV +K GIFVH VERG + + TID RRQ+ NH+ATHLL AL Sbjct: 518 VIRVEDV-QKESGIFVHFGRVERGSVSVNDQVTATIDRACRRQVQANHTATHLLQAALKK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +SQ GS + D LRFD + +TS EL+ IED +N IA+ +M E A Sbjct: 577 VVDKSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHETEIAVMPIETA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRV+ V S LCGGTHV +T EI L I+SES I +G Sbjct: 637 KEKGAIAMFGEKYGSEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G +L ++ +K L K+ + R+ + E + Q K Sbjct: 692 VRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQKELEAVKQ 751 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 L V I + + + E+D+K L++ + LQ+K+ G ++L I E Sbjct: 752 DLAVAKSDQLLTEAESIGEFKLLVSDMGEMDAKALQTAAERLQQKLGEGAVILGSIPSEG 811 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ ++ + + A AK+ GGGG GGRP++AQ+GG +K +A+ Sbjct: 812 KVSLVAAFSKKVNQEKQLQAGKFIGQIAKICGGGG-GGRPNLAQAGGREPSKLSEALLTA 870 Query: 893 ASFLKK 898 L + Sbjct: 871 KEQLTE 876 >gi|254829737|ref|ZP_05234392.1| alanyl-tRNA synthetase [Listeria monocytogenes 10403S] Length = 879 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTYFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR+RARA + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDRVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELRTALDYVSTWVKE 876 >gi|161509845|ref|YP_001575504.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848647|ref|ZP_06789393.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754] gi|304380785|ref|ZP_07363452.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|205830218|sp|A8Z4F6|SYA_STAAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160368654|gb|ABX29625.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|269941104|emb|CBI49490.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20] gi|294824673|gb|EFG41096.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754] gi|302751447|gb|ADL65624.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340661|gb|EFM06594.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140495|gb|EFW32349.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144034|gb|EFW35803.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314293|gb|AEB88706.1| Alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131] gi|329728452|gb|EGG64889.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189] Length = 877 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT Sbjct: 61 KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 K ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EI Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173 Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 F+D+GE P E ERY+E+WNLVF +F LP +IDTGMGLE Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHS Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742 Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860 Query: 883 NKADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 ENISKSLSFIKDYIK 875 >gi|323439035|gb|EGA96767.1| alanyl-tRNA synthetase [Staphylococcus aureus O11] gi|323442822|gb|EGB00447.1| alanyl-tRNA synthetase [Staphylococcus aureus O46] Length = 877 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT Sbjct: 61 KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 K ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EI Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173 Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 F+D+GE P E ERY+E+WNLVF +F LP +IDTGMGLE Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKVTTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHS Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742 Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860 Query: 883 NKADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 ENISKSLSFIKDYIK 875 >gi|282916887|ref|ZP_06324645.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] gi|283770692|ref|ZP_06343584.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] gi|282319374|gb|EFB49726.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] gi|283460839|gb|EFC07929.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGLVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|283470895|emb|CAQ50106.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398] Length = 877 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT Sbjct: 61 KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSE 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 K ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EI Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173 Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 F+D+GE P E ERY+E+WNLVF +F LP +IDTGMGLE Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHS Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742 Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860 Query: 883 NKADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 ENISKSLSFIKDYIK 875 >gi|57650500|ref|YP_186513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87161149|ref|YP_494270.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195427|ref|YP_500231.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221731|ref|YP_001332553.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|221141112|ref|ZP_03565605.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450555|ref|ZP_05698617.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948] gi|284024675|ref|ZP_06379073.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132] gi|71153554|sp|Q5HFE4|SYA_STAAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122539371|sp|Q2FXV9|SYA_STAA8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123485547|sp|Q2FGA8|SYA_STAA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830217|sp|A6QHF9|SYA_STAAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57284686|gb|AAW36780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87127123|gb|ABD21637.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202985|gb|ABD30795.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374531|dbj|BAF67791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|257861713|gb|EEV84512.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948] gi|315198685|gb|EFU29013.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01] Length = 876 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|294501349|ref|YP_003565049.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551] gi|294351286|gb|ADE71615.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551] Length = 877 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 360/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+FF++ GH++ PS+SL+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKKLTSAQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT K Sbjct: 61 PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +L +TV+ ED+EAFK+W + G+ ++IIR+ NFW + E GP GP +EIF Sbjct: 117 WIGFDADKLSVTVHPEDKEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE L E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGEAYGNDLNDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ N+D DLF +I+A+E ++G KY N+ +VI DH+R+ +F + DG Sbjct: 234 MVSVIQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I+ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ + + G+ F+LYDT+G P+++ ++ Sbjct: 354 VKNEEERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + ID F + +E QR RARA S + L E A++F+GYD Sbjct: 414 NMK-IDHAGFEREMEAQRERARAARQDSSSMQVQGGV--LGEVTVASEFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 N V ++V+AI+ GE+V+ A +G + +V+ TPFYAE+GGQ+ Sbjct: 464 ----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G ++ DVQK G V V G L T+D +NR + NH+ Sbjct: 508 ADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGEIYTATLDEENRSAIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG+HV+Q GS +T D LRFD +H +T EL+ IE VN+ I ++ Sbjct: 568 ATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSIS 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V ++A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q LK A+ +K + ++VGRVE + EE R Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEIR 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + +L + I VN ++ ++ D L++++D L++K++S Sbjct: 743 NLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLESA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L E K +++ VT+DL+ + +A L + A + GGGG GGRP MAQ+GG + Sbjct: 803 VIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGG-GGRPDMAQAGGKDA 860 Query: 883 NKADQAIAGVASFLK 897 ++ ++A+ V ++K Sbjct: 861 SQIEKALGTVEEWVK 875 >gi|312793514|ref|YP_004026437.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180654|gb|ADQ40824.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 883 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 344/909 (37%), Positives = 521/909 (57%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 3 MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 63 TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + +VT +Y + V+ RVI DH+R + F+I DGILP+NEGR Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ R Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL +L+ + L K++ ILNG++AF++YDT+G PLD+ ++I +G+ +D Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKEIILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +++Q+ RARA L + + I + E T F+GYD L Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLEQD--------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I E V+ D+TPFYAE+GGQ+ D G Sbjct: 467 --------------AKILKIFLDNEETAYVKEEDVCFVILDKTPFYAESGGQVADKGILE 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G+ ++ DV+K +G +H V +G + S+V ++ + R NH+ATHLLH Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVNEELRLATMKNHTATHLLHS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG H Q+GS +TPD LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS Sbjct: 633 LDSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG +A ++ + LK L S +K S ++ ++E++ + L+ Sbjct: 688 VAAGVRRIEAITGNKAYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEV 747 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + +LS + + + D +K + D ++++ S I+L Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I + K ++L+ +++ + + + + + VL GG GGGRP AQ GG + +K D A Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|282908937|ref|ZP_06316755.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911255|ref|ZP_06319057.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|295428195|ref|ZP_06820827.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590838|ref|ZP_06949476.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|282324950|gb|EFB55260.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327201|gb|EFB57496.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|295128553|gb|EFG58187.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575724|gb|EFH94440.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|312437914|gb|ADQ76985.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60] Length = 877 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 340/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT Sbjct: 61 KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 K ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EI Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173 Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 F+D+GE P E ERY+E+WNLVF +F LP +IDTGMGLE Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHS Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 VNIQEMDIVSAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV N VV ++ ++ +E Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQLQDEE 742 Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860 Query: 883 NKADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 ENISKSLSFIKDYIK 875 >gi|49483863|ref|YP_041087.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425743|ref|ZP_05602167.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428403|ref|ZP_05604801.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431041|ref|ZP_05607420.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257433727|ref|ZP_05610085.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257436642|ref|ZP_05612686.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282904199|ref|ZP_06312087.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|282906025|ref|ZP_06313880.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282914423|ref|ZP_06322209.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282919393|ref|ZP_06327128.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282924718|ref|ZP_06332386.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|283958379|ref|ZP_06375830.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293503498|ref|ZP_06667345.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|293510515|ref|ZP_06669221.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] gi|293531055|ref|ZP_06671737.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|56749413|sp|Q6GG85|SYA_STAAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49241992|emb|CAG40689.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271437|gb|EEV03583.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275244|gb|EEV06731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278244|gb|EEV08886.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257281820|gb|EEV11957.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257283993|gb|EEV14116.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282313553|gb|EFB43948.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|282317203|gb|EFB47577.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282321604|gb|EFB51929.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282331317|gb|EFB60831.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595817|gb|EFC00781.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|283790528|gb|EFC29345.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920323|gb|EFD97389.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095164|gb|EFE25429.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|291466879|gb|EFF09399.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] gi|315195518|gb|EFU25905.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 340/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIVSAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV N VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|258424044|ref|ZP_05686926.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635] gi|257845665|gb|EEV69697.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635] Length = 877 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 339/915 (37%), Positives = 506/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT Sbjct: 61 KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 K ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EI Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173 Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 F+D+GE P E ERY+E+WNLVF +F LP +IDTGMGLE Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHS Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV VV ++ ++ +E Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSNDQVVDKLTQLQDEE 742 Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860 Query: 883 NKADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 ENISKSLSFIKDYIK 875 >gi|21283297|ref|NP_646385.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49486451|ref|YP_043672.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|297207662|ref|ZP_06924097.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911744|ref|ZP_07129187.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] gi|33301697|sp|Q8NW87|SYA_STAAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56749384|sp|Q6G8V1|SYA_STAAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21204737|dbj|BAB95433.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49244894|emb|CAG43355.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887679|gb|EFH26577.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885990|gb|EFK81192.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 876 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIENQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|298694898|gb|ADI98120.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKETTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|302333292|gb|ADL23485.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 338/914 (36%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPSEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ ++G AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEISGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITFASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|262051273|ref|ZP_06023497.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|282920165|ref|ZP_06327890.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765] gi|259160910|gb|EEW45930.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|282594513|gb|EFB99498.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765] Length = 876 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDRVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|172058083|ref|YP_001814543.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] gi|205830090|sp|B1YJE5|SYA_EXIS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171990604|gb|ACB61526.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] Length = 880 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 348/911 (38%), Positives = 520/911 (57%), Gaps = 57/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L+FFQ GH + PS+SL+P DPTL++ NSG+ K F G+ P + Sbjct: 8 TGAQIRQMYLDFFQSKGHAIEPSASLVPIEDPTLLWINSGVATLKKYFDGRVIPQNPRIV 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E AI+ W+LLT + + L Sbjct: 68 NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFREDAIKWGWELLTSDEWYGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +T++ ED+ A ++W ++ G+ A++II + DNFW + E GP GP +EIFFD+G Sbjct: 124 DPDRLSVTIHPEDDAARQIWLEL-GVPAERIIPL--EDNFWEIGE-GPSGPNTEIFFDRG 179 Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E ERY+EIWN+VF Q+ LP+ +IDTGMGLERMA+V Sbjct: 180 PAFGDDPNDSELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASV 239 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ N+D DLF +I +E+++G +Y + V +VI DH+R+ +F I DG LP+N Sbjct: 240 MQDVPTNFDTDLFMPIIHKTEEISGKRYREDTKLDVAFKVIADHIRTVAFAIGDGALPSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA++LG P M L+ + + M YP++ + I+ +++E Sbjct: 300 EGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDTVGSVMVDFYPQVPEKADFIKRVIKNE 359 Query: 355 DERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL GL +L+ V + + I++G+ AF+LYDT+G PL++ Sbjct: 360 EERFHETLHDGLAILNTVAQAAKNNGEHIISGEDAFRLYDTYGFPLELT-VEYAEDHQMS 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A++EQR RARA GS + L +QF+GY L Sbjct: 419 VDEEGFKRAMDEQRKRARAAREDGGSMQQQSEV--LATLTVPSQFVGYTDLEAD------ 470 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + A++ GE V E +G++ +++ D TPFYAE+GG++ D+G Sbjct: 471 -----------------AKIIALLHDGERVTEVAAGEEAQLLLDVTPFYAESGGEVADSG 513 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G L + DVQK G +H +V GI + S+ ++ +R+ ++ NH+ATHL Sbjct: 514 TITGPDFVLDVKDVQKAPNGQNLHTVVVRTGIALADASVHAAVEASSRQAITKNHTATHL 573 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG+HV+Q GS ++ + LRFD +H +T+ EL +IE +VN I +L V Sbjct: 574 LHKALKDTLGTHVNQAGSLVSAERLRFDFSHFGAVTAEELATIEQDVNQAIWASLAVEIE 633 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 MN DA A GA AL G KY + VRVVS G +S LCGG HV +T EI L IVS Sbjct: 634 EMNIADAKAKGAMALFGEKYGETVRVVS-----AGTYSIELCGGIHVRNTAEIGLFKIVS 688 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG A + G + L+ A LK V GR+E + + R+ + Sbjct: 689 ESGIGAGTRRIEAVTGAGAYHVMNGHLQTLEQAARVLKTKTTEVPGRIEALQVQLRETER 748 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 H + +L + + +I V ++ + D L+ +MD L+ + S II+L Sbjct: 749 AHESLQAKLANIEAASLKDDVEQINGVQVLAKQVDVSDMDALRGMMDELKSSLGSAIIVL 808 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K +++ V++DL+D ++A L + A GGGG GGRP MAQ+GG + K + Sbjct: 809 GSAQGD-KVNLVASVSKDLIDQGYHAGKLIKEVATRCGGGG-GGRPDMAQAGGKDPAKLN 866 Query: 887 QAIAGVASFLK 897 +A+A + +++ Sbjct: 867 EALAFTSHYVQ 877 >gi|254828262|ref|ZP_05232949.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] gi|258600650|gb|EEW13975.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] Length = 879 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR+RARA + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNT 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELGTALDYVSTWVKE 876 >gi|238651102|ref|YP_002916960.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic] gi|238625200|gb|ACR47906.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic] Length = 878 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 406/901 (45%), Positives = 557/901 (61%), Gaps = 37/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y Sbjct: 5 TTEEVRSKFITYFKANNHTHIPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + Sbjct: 65 TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GGLPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYDIDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVL Sbjct: 245 NNYDIDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF T Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAENFISSILEQEEIRFKAT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL LL L K L+G+VAFKLYDT+G PLD+ +DIL R +D F + Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RAR LG G T ++WF +KE++G+T+F+GY L Sbjct: 424 MLMQKERARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL------------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N + A+++ +V + + ++ +QTPFY E+GGQ+GD G Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ D K I VH I+++G + + +ID + R+ L I+HSATH+LH L + Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDA+ Sbjct: 581 LGKHVIQKGSLVAPTYLRFDISHSKTVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAV 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY+ VRVV + G S LC GTHV TG+I I SES+I AG+ Sbjct: 641 KQGATALFGEKYDSEVRVVKM-----GETSLELCSGTHVRRTGDIGCFKITSESAIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776 RRIEA G+ + + +D LKS+ S K ++ ++ +V I E ++++ K Sbjct: 696 RRIEAACGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + +I + + + +D+K L+ + L KK++ I++ + K Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+ + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + S Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874 Query: 896 L 896 L Sbjct: 875 L 875 >gi|160933050|ref|ZP_02080439.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753] gi|156868124|gb|EDO61496.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753] Length = 877 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 323/911 (35%), Positives = 501/911 (54%), Gaps = 51/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ +R +L+FF+ GH LPS SL+P D +L+ NSGM P K FTG+ P Sbjct: 1 MKWTGLNELREKYLQFFESKGHLRLPSFSLVPNGDKSLLLINSGMAPMKKYFTGEVTPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VTT QKC+R D++ VG T RH T+FEMLGNFSFG YFK A AW+ TK Sbjct: 61 NRVTTCQKCIRT----PDIERVGITARHGTYFEMLGNFSFGDYFKHEATAWAWEFCTKVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L R+++++Y +D+EAF +W K G+ +I+R+ DNFW TGPCGPCSE++FD Sbjct: 117 ELPVERIWVSIYQDDDEAFDIWTKEVGVDPSRIVRLGKEDNFWEHG-TGPCGPCSELYFD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +RY+E WNLVF QF+ + L +IDTGMGLER+A + Sbjct: 176 RGEEYGCGSPTCGVGCDCDRYVEFWNLVFSQFDNDGQGNYTPLEHKNIDTGMGLERLACI 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q N + +D +++++ ++ G++Y + ++ RV+ DH+RS++F+I DG++P+N Sbjct: 236 MQGVDNLFLVDTVQNIMKHISKIAGVEYGADPKTDISLRVVTDHIRSTTFMIGDGVMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG P + + + E SAYPEL++ + I++ + E Sbjct: 296 EGRGYVLRRLLRRAARHGRLLGIRRPFLAEVCDTVINENQSAYPELVEKRDFIKKLISVE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F +T+D+GL +L ++ + + +IL+G AF+L DT+G PLD+ ++I+ +G+ +D Sbjct: 356 EENFDRTIDQGLQILGALIEN-SEKKILSGAEAFRLNDTYGFPLDLTKEIIAEKGMT-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + L EQR+RAR G+ L + AT+F GY L+ Sbjct: 414 ESEFQRLLSEQRTRARNARKNAGADAWLSESVDL-DGIPATEFTGYATLKD--------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + AI++ GE VE A V VV D+TPFYAE+GGQ+GDTG Sbjct: 464 --------------TARILAILRDGERVESAEMNDDVVVVLDRTPFYAESGGQVGDTGFL 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K G+F+HH V L + +D R + NH+A HLL Sbjct: 510 TDGAGRFAVLDTTKHHSGVFLHHCHVVVEGLSVGSEVECVVDGIRRYNIMRNHTAAHLLQ 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q G + +RFD TH +T E +E+ VND I + V + M Sbjct: 570 AALRKVLGTHVEQAGQLVDGQRVRFDFTHFSALTKEETARVEEIVNDEILSAVQVTSTEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A GA AL G KY D VRVV G S+ CGGTHV++T + L I+SES Sbjct: 630 PIEEAKKLGAMALFGEKYGDIVRVVQ-----AGEFSTEFCGGTHVNNTARLGLFKIISES 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLI 773 S+ +G+RRIE +TG+ H+ + ++ +S LK + + E + E ++L+ Sbjct: 685 SVASGVRRIEGVTGRGVLQHMAEDAKTIQDASSALKLNNPAELPEACEHLLSEQKELRRE 744 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K +L + S + V ++ S + L+++ D +++ + + + Sbjct: 745 LEKANARLANWQVDGLFDSAEMVKGVKIITGSFSSTTADALRTMSDRVRENAPNSVAVFA 804 Query: 829 GISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I + KA + ++ +A ++ R +AK + GG GGG+P A +G + K D+ Sbjct: 805 AI-NDGKAVLSATAGKEAQQKGCHAGNIVRAAAK-VAGGNGGGKPDFAMAGAKDLTKIDE 862 Query: 888 AIAGVASFLKK 898 A+A V + + + Sbjct: 863 ALAAVNTIVSE 873 >gi|253732273|ref|ZP_04866438.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724062|gb|EES92791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 877 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 338/915 (36%), Positives = 506/915 (55%), Gaps = 58/915 (6%) Query: 1 MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT Sbjct: 61 KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 K ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EI Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173 Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 F+D+GE P E ERY+E+WNLVF +F LP +IDTGMGLE Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 RMA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ +F +++QR RAR S + LK + F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSVSTFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHS Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A +L EK ++ S LKV + VV ++ ++ +E Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742 Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860 Query: 883 NKADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 ENISKSLSFIKDYIK 875 >gi|126641224|ref|YP_001084208.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978] Length = 837 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 372/872 (42%), Positives = 500/872 (57%), Gaps = 52/872 (5%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK+ F G EK Y TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDCFLGLEKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K A++ AW+ LT + L + +LY+TVY D+EA+ +W K GL+ ++IIRI N Sbjct: 61 KRDALKFAWEFLTSEQWLALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGE 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212 DNFW+M +TGPCGPCSEIFFD GE I GGLPGS E+G+R+IEIWN VFMQF + Sbjct: 121 KYASDNFWAMGDTGPCGPCSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LP S+DTGMGLER++ VLQ +NYDIDLF+HL++A+ + G++ EG + Sbjct: 181 DGVLHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSL 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RV+ DH RS FLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L Sbjct: 239 RVVADHARSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MG AYPEL + +IE TL E+E+F KTL++GL LL+G L+ L D+ + G FKLYD Sbjct: 299 MGQAYPELEARREVIEATLIREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P D+ DI RG ID F + QR RAR +G + ++ + Sbjct: 358 TYGFPTDLTADIARERGFI-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVE 410 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 G TQF GY G + AI + G V+E G + Sbjct: 411 GETQFDGYTNTTG-----------------------QGQIVAIYKDGVQVDEVSEGDEAL 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +V +QTPFYAE+GGQ+GDTG + ++ D +K FVH IV G L+T ++ Sbjct: 448 IVLNQTPFYAESGGQIGDTGIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVE 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 + R + NHSATHLLH AL ILGSHV Q GS + D LRFD + +P++ +L Sbjct: 507 AIVKADIREATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQL 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSS 691 + +E VN I N V T +++ E A A GA L G KY D VRV+S+ D S Sbjct: 567 QQVERLVNAEIIANTAVTTELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSI 626 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 LCGG HV TG+I L I SE + AG+RRIEA+TG +A + D ++ + S LK Sbjct: 627 ELCGGIHVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKA 686 Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDS 806 + V RV+ E LQ + +L + IA + + VD+ Sbjct: 687 QKDQTVERVQANVELVSALQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDA 746 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 K L+++ D+++ K+++ +I+L G+ + K S+L V A D+ + A L GG Sbjct: 747 KALRNLHDSVKSKLENAVIVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GG 804 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGG+P +AQ G P K Q +A + ++L++ Sbjct: 805 KGGGKPDLAQGGAPLNEKFGQVMAALPAWLEQ 836 >gi|153953949|ref|YP_001394714.1| alanyl-tRNA synthetase [Clostridium kluyveri DSM 555] gi|219854563|ref|YP_002471685.1| hypothetical protein CKR_1220 [Clostridium kluyveri NBRC 12016] gi|205830035|sp|A5N7T5|SYA_CLOK5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146346830|gb|EDK33366.1| AlaS [Clostridium kluyveri DSM 555] gi|219568287|dbj|BAH06271.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 879 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 332/907 (36%), Positives = 524/907 (57%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+K H LPS SL+P ND +L+ N+GM P K FTG + P + V T Sbjct: 6 LNQIREMYLSFFEKKAHLRLPSFSLVPQNDKSLLLINAGMTPLKPYFTGLKVPPSKRVAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L + Sbjct: 66 CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEVLKLPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+T+Y +D+EA+ +W K + + KI R+ DNFW GPCGPCSEI++D+ + Sbjct: 122 RLYVTIYLDDDEAYDIWVKSTDVDPSKIFRLGKEDNFWEHG-VGPCGPCSEIYYDRAQEK 180 Query: 184 PG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + + ++ +E WNLVF QF++ L +IDTGMGLERMAT++Q + Sbjct: 181 INSVEEFVEAADNDKIVEFWNLVFTQFDKDENGNYNRLSNPNIDTGMGLERMATIMQGEN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +++D +++ ++G KY NN ++ R+I DH+RS +F+I+DGILP+NEGRGY Sbjct: 241 SIFEVDTINAILKEVCNISGTKYNEHKNNDISIRIITDHIRSITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + + LG + + L + +YP+L K I++ +R E+ERF Sbjct: 301 VLRRLLRRAAKHGKSLGIDDRFLYKLSNVVIDNSCESYPKLKDRKEYIKKVIRLEEERFD 360 Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L+ + L +L G+ AFKLYDT+G P+++ ++IL + + G+D+ Sbjct: 361 ETIDSGMKILNEFIEELENSNSLLLEGEKAFKLYDTYGFPIELTEEILQEKNM-GVDLEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN+ ++ Q+ AR+ E + Y T F GY+ L Sbjct: 420 FNKKMQNQKEMARSARTETNYMGAEDTVLNKIPLYIDTVFEGYNSLES------------ 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +S VK ++++GE V G+K ++ TPFYAE GGQ+GD G + Sbjct: 468 -----------TSKVKLMIKEGEFVSLLSQGEKGVILVANTPFYAEMGGQVGDKGIIYNE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +I D + G +H V G + E +++L +D R + NH++THLL AL Sbjct: 517 NFEGKIIDCKNNVAGKILHFVEVISGSVSLEDTVLLKVDKNRRDDIRRNHTSTHLLGEAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q+GS + LRFD H + + +L+ +E+ VN+ I + V T +M+ E Sbjct: 577 RRVLGEHVHQSGSYVDEHRLRFDFNHFESLNDKQLREVEELVNENIRKAKTVNTNLMSLE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A SGA A+ +KY+D VRVVS+ G S LCGGTHV ++GEI L IVSE+ I Sbjct: 637 EAKKSGAVAIFDSKYSDEVRVVSI-----GDFSRELCGGTHVGNSGEIGLFKIVSEAGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+TG+ A +L + + LK +A+ K S+ +V +++ + E R+L+ + Sbjct: 692 AGIRRIEAVTGREAVEYLYSKSDMLKEIANKFKCSEKEIVHKLDLQFNELRELRKELEEF 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K++L + +N + I+ +VD L+ + D ++ K Q+ +++L G + Sbjct: 752 KIKLAGSAEESILNGVKIVKGINLFTGILKDVDGNALRELADKIRSKSQNAVVLL-GSNA 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K +++ + T+D +++ + + + A V GGGG GGRP MAQ+GG +K ++AI Sbjct: 811 EGKVNLVAMATKDAVEKGVHCGKIIKEVAAVAGGGG-GGRPDMAQAGGKFPDKLEEAIGK 869 Query: 892 VASFLKK 898 ++ ++K Sbjct: 870 CSAIMEK 876 >gi|94676688|ref|YP_588660.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|205829990|sp|Q1LTQ4|SYA_BAUCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94219838|gb|ABF13997.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 884 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 350/911 (38%), Positives = 524/911 (57%), Gaps = 59/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R FL FF + GH+++ SSSL+ NDPTL+FTN+GM FK++F G +K +YQ+ T Sbjct: 5 STAELRQEFLNFFHQKGHKIVASSSLVSHNDPTLLFTNAGMNQFKDVFLGLDKRLYQSAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+C+RAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK AIQLAW+LLT + F+L Sbjct: 65 TAQRCIRAGGKHNDLEKVGYTARHHTFFEMLGNFSFGAYFKCEAIQLAWELLTGGQWFNL 124 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+E + +W K + ++I+RI N DNFW M + GPCGPCS Sbjct: 125 PKDKLWVTVYATDDETYNIWAKQINIPRERIVRIGDNKGKAYASDNFWQMGDIGPCGPCS 184 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G + G PGS E G+RYIEIWNLVF+QF +Q L K S+DTGMGLER Sbjct: 185 EIFFDHGNHLFGAPPGSQGEYGDRYIEIWNLVFIQFNRQMDGTLIPLQKPSVDTGMGLER 244 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDID+F LI+A VT N + +VI DH+RS +FL++DG++P Sbjct: 245 IAAVLQHVNSNYDIDIFSQLIKAVADVTK----ATNTSSLQVIADHIRSCAFLVSDGVVP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 + +GRGYVLR I+RRA+ + +LG + L+ L MGS +L Q + ++E+ LR Sbjct: 301 SQDGRGYVLRHIIRRAIRHGYMLGARDAFFYKLVAPLIEVMGSTADQLKQQQNMVEQVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL +L+ VL+ L + L+G+ AF LYDT+GLP+ + DI R + Sbjct: 361 TEEEQFSQTLERGLFMLEQVLTKLT-GDTLDGETAFSLYDTYGLPIYLTTDICRERNIK- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+E QR+RAR S + S+ T+F+GY L+ Sbjct: 419 VDENGFKSAMEVQRNRAREASRFSYK------YNSMLSINQYTRFLGYKHLKS------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V A+ + VE +K V+ D TPFY E+GGQ+GD+G Sbjct: 466 ----------------QGKVTALYLNDQSVEVIYHSEKAIVILDYTPFYGESGGQIGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D +K + H ++ G LR + ++ R ++S+NHSATHL Sbjct: 510 KITAANGIFEVIDTKKYGNAL-GHLGMLNYGELRIGDQVTAKVNQLRRDRISVNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG HV Q GS + LRFD +H + + ++ +E +N I +NL + T Sbjct: 569 LQSALRQLLGKHVVQRGSLVHDQYLRFDFSHHQAMQVEQIHEVEKIINQQIRRNLIIKTD 628 Query: 653 IMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M E A GA ++L +Y +VRV+S+ G S+ LC GTH S TG+I L +I Sbjct: 629 MMTLEAAQNQGAISVLDHQYESSQVRVLSI-----GDFSTELCCGTHASRTGDIGLFWIS 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I GIRRIEAITG+ A +L Q ++ ++ K N+V +V + ++L+ Sbjct: 684 SESGIALGIRRIEAITGEFALKNLHQQSNLVQQISQLFKNDGSNLVEKVRGLQNHIKQLE 743 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + K + +++ K+ + + ++ K ++ ++D ++ ++ S +I+ Sbjct: 744 SKYQQLKSKQVAQEIAVLSRKISKMHGTQVLVSKLENIEPKIMRHIVDEIKHQLGSVVII 803 Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L I+ + K +++ VT+DL +R A D+ R + GG GGG +A +G N+ Sbjct: 804 LANINLVDGKVNLIAGVTDDLTNRIQASDIIRTLIQK-FGGRGGGSKKIAYAGSITTNEL 862 Query: 886 DQAIAGVASFL 896 + + + Sbjct: 863 STVLYYIEKIV 873 >gi|257055557|ref|YP_003133389.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] gi|256585429|gb|ACU96562.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] Length = 888 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 340/920 (36%), Positives = 516/920 (56%), Gaps = 61/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I FL++F+++GH +PS+SLI +DPTL+F N+GMV FK F G+ P Y Sbjct: 1 METHEINKRFLDYFERHGHTKVPSASLI-LDDPTLLFVNAGMVQFKPYFLGEVPPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D+D VG+T RH+TFF+M GNFSFG YFK+ AI+LAW+ +T Sbjct: 60 TSVQKCVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKQGAIELAWEFITTSQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L+ RL+ TVY+ D EA LW+ ++GL +++I +DN+W M GPCGPCSEI+ Sbjct: 116 GLGLNPDRLWATVYEHDAEAAALWRDVAGLPSERIQFRGPDDNYWDMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RY+EIWNLVFMQ + Q LP+ +IDTGMG+ Sbjct: 176 YDRGPEY-GREGGPVVDEDRYLEIWNLVFMQEMRGELSPKQGHAPIGELPQKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+ +G +Y + + V RVI DH RS LIAD Sbjct: 235 ERVAYLLQGVENVYETDLVRPVITKAEEFSGRRYGADHADDVRFRVIADHARSGVMLIAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NE RGYVLRR++RR + RLLG EP++ + M +YPE+ + I Sbjct: 295 GVTPGNEARGYVLRRLLRRIVRSVRLLGVHEPVLPEFAAVVRDAMAPSYPEIARDFDRIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+E F TL G + D + IL+GD AF+L+DT+G P+D+ ++ Sbjct: 355 DVMRAEEEAFLATLTSGSRIFDLAAQETKRAGGTILSGDKAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F +E+QR RA+A + +G + ++ L E++G T+F+GY L+ Sbjct: 415 EQGLS-VDEEGFRTLMEQQRQRAKADAASRKTGHGDLSVYRKLLEEHGETEFLGYTDLQ- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ V ++ G+ V A G E+V D+TPFYAE G Sbjct: 473 ----------------------ATARVLGLLVDGKPVRSASEGSVAELVLDRTPFYAEGG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ DTG IG+G L++ DVQ+ G+FVH V G + + L ++D R ++ Sbjct: 511 GQIADTGVLIGEGAELKVLDVQRLVPGLFVHRVEVVAGEVGVDTQLTASVDGTRRASIAR 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHL+H A+ G+ +Q GS TP +RFD T K ++ L +E+ VND + Sbjct: 571 SHSATHLVHAAVRGAYGNRAAQAGSLNTPGRMRFDFTTPKSVSDDVLTEVEEEVNDYLQT 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 ++ V ++ A+ GA AL G KY DRVRVV + G +S LCGGTHV G++ Sbjct: 631 DVEVQAYTTTKDRALELGAIALFGEKYGDRVRVVDM-----GDYSRELCGGTHVERIGQL 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ +VS+SS+ +G+ R+EA+ G A H+ + + LAS LKV V R++++ Sbjct: 686 GLVKLVSDSSVGSGVHRVEALVGTDALRHVRKEQLLVSQLASTLKVPADEVPSRIQDVLT 745 Query: 766 EYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819 R + + +L+ + S +IA V+ ++ + EVD+ L+ + ++ + Sbjct: 746 RLRNAEKEIEQLRLREVLNSASTLAERAREIAGVSVVAERLDQEVDAGALRKLTGEVRNR 805 Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + S G++ L S E K S ++ T + D A L A+++ GG GGG+P MAQ Sbjct: 806 LGSRPGVVALFAPSGEGKVSFVVATTAEARDAGLAAGKLVPAFAELV-GGRGGGKPDMAQ 864 Query: 877 SGGPNGNKADQAIAGVASFL 896 GG +QAI + + + Sbjct: 865 GGGSRPEGVEQAIEALRAAV 884 >gi|15924608|ref|NP_372142.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|15927198|ref|NP_374731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|148268099|ref|YP_001247042.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|150394167|ref|YP_001316842.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156979936|ref|YP_001442195.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|253316601|ref|ZP_04839814.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006403|ref|ZP_05145004.2| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793693|ref|ZP_05642672.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781] gi|258411008|ref|ZP_05681288.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763] gi|258420190|ref|ZP_05683145.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719] gi|258438192|ref|ZP_05689476.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299] gi|258443655|ref|ZP_05691994.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115] gi|258448776|ref|ZP_05696888.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224] gi|258453595|ref|ZP_05701573.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937] gi|269203244|ref|YP_003282513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|282893121|ref|ZP_06301355.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117] gi|282928252|ref|ZP_06335857.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102] gi|295406740|ref|ZP_06816545.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819] gi|296276721|ref|ZP_06859228.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1] gi|297245678|ref|ZP_06929543.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796] gi|54039649|sp|P67011|SYA_STAAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|54042024|sp|P67010|SYA_STAAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830214|sp|A7X328|SYA_STAA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830215|sp|A6U287|SYA_STAA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830216|sp|A5ITE3|SYA_STAA9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13701416|dbj|BAB42710.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|14247389|dbj|BAB57780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|147741168|gb|ABQ49466.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|149946619|gb|ABR52555.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156722071|dbj|BAF78488.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|257787665|gb|EEV26005.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781] gi|257840158|gb|EEV64622.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763] gi|257843901|gb|EEV68295.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719] gi|257848236|gb|EEV72227.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299] gi|257851061|gb|EEV75004.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115] gi|257858054|gb|EEV80943.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224] gi|257864326|gb|EEV87076.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937] gi|262075534|gb|ACY11507.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|282590059|gb|EFB95141.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102] gi|282764439|gb|EFC04565.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117] gi|285817300|gb|ADC37787.1| Alanyl-tRNA synthetase [Staphylococcus aureus 04-02981] gi|294968487|gb|EFG44511.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819] gi|297177329|gb|EFH36581.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796] gi|312830005|emb|CBX34847.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129899|gb|EFT85889.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03] gi|329727520|gb|EGG63976.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 338/914 (36%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S +KV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|224476716|ref|YP_002634322.1| alanyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421323|emb|CAL28137.1| putative alanyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 340/914 (37%), Positives = 510/914 (55%), Gaps = 57/914 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IR F+++F++ GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKQLKASEIRQNFIDYFKEQGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREIPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT + Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSDR 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ LW + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDTEAYDLWHDVIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGPEYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I+ E+++G KY+ + V +VI DH+R+ +F I DG Sbjct: 234 MASIAQNVRTNYETDLFMPIIEDVEKISGKKYQEDADQDVAFKVIADHIRTIAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ A+ M YPE+ Q I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYQLVDAVADIMEPYYPEVKQKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ ++NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEEGLAILNDMIKDAKAGGNVINGKDAFKLYDTYGFPIELTEEIADNEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK + F GYD++ Sbjct: 414 LT-VDMKTFEAEMQKQRDRARQARQKSESMQIQSEV--LKNITTQSTFTGYDVMDQ---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ + I+ GE VE+A +G V V + TPFYA +GGQ+ Sbjct: 467 -------------------NTKITDIIVNGERVEKADAGDTVFFVLEATPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + +++T+V G +H V+ G + + ++++ +RR + NHSA Sbjct: 508 DQGTVSNENFEIEVTEVTNAPNGQNLHKGAVQFGQVAEGAEVEASVNHADRRDIKKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + D LRFD +H P+T EL+ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEGDRLRFDFSHFGPVTEEELEQVERRVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M E+A ASGA AL G KY D VRVV + S LCGG HV +T EI L Sbjct: 628 TIKEMPIEEAKASGAMALFGEKYGDVVRVVDMSP-----FSIELCGGIHVQNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L K K++ +K Q V +V ++ + + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEEIQNKFKAVKHQVKAKQDEQVAEKVSQLIDNEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L +R L++ D +I + ++ + ++K L+ MD + K+Q Sbjct: 743 QLHKQLEQRNQEITALKMGSIDDQIEEINGLKVLALQVDAENAKALRQTMDDFKSKLQDS 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L + K +++ V + D+ A DL + A V+ GG GGGRP MAQ GG + Sbjct: 803 VIILASDVGD-KVALVATVPKSETDKVKAGDLIKNMAPVV-GGKGGGRPDMAQGGGSEPS 860 Query: 884 KADQAIAGVASFLK 897 K +A+ + +++K Sbjct: 861 KITEALQFIKNYIK 874 >gi|255026679|ref|ZP_05298665.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-003] Length = 879 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PXMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIIFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR+RARA + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +V+E +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE + + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + + K +++ V+E+ + ++A L + A GG GGGRP MAQ+GG N Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860 Query: 883 NKADQAIAGVASFLKK 898 + A+ V++++K+ Sbjct: 861 AELRTALDYVSTWVKE 876 >gi|299140238|ref|ZP_07033404.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8] gi|298597777|gb|EFI53949.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8] Length = 895 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 346/931 (37%), Positives = 516/931 (55%), Gaps = 78/931 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL FF++ GH + SSSL+P NDPTL+FTN+GM FK++F G E Y Sbjct: 5 SGNQIREEFLRFFEEKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAETRDYSRAA 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F + Sbjct: 65 SSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIKYAWELLTSEDWFGI 124 Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 D+ +LY+T+++ D EA + W + +G+ D+I + DNFW+M +TGPCGPCSE Sbjct: 125 DKSKLYVTIFEGDAAVPRDNEAEQFWLE-AGVPKDRIYELGAKDNFWAMGDTGPCGPCSE 183 Query: 175 IFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 I++D G G E+ +RY+EIWNLVFMQF++ + LPK SIDTGMGLER Sbjct: 184 IYYDLGLAASETGEDKPFGEDDQRYMEIWNLVFMQFDRSSDGVLTPLPKPSIDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHRVIVD 277 +A VLQ K +NY+ DLF L+ A+ ++T + + R+I D Sbjct: 244 VACVLQGKLSNYESDLFTPLLAAAVKLTNFAQSSELREASIEQLAVSDEKGAASLRIIAD 303 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337 H R+S+FLI+DG+LPANEGRGYVLR+I+RR + + RLLG +P M ++ A+ EMG AY Sbjct: 304 HARASTFLISDGVLPANEGRGYVLRKILRRGIRHGRLLGQEKPFMHEMVLAVRDEMGEAY 363 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + + + + +E+++F +TL+ GL ++ +G AF LY+T G+P Sbjct: 364 PELKDSAERVAKVVLAEEQQFARTLELGLRQMNEETLR-------SGSQAFHLYETFGMP 416 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 LD M D G D+ F A EE++ RARA G + ++ L T+F Sbjct: 417 LDFMVDAARDAG-IEFDMAGFEAAKEEEQQRARASWKGGSQKSASPVYRELA----KTEF 471 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY LR + V A+V+ G V E G+ EVV D Sbjct: 472 EGYTSLRVDG----------------------AKVIALVKDGVGVNELKPGETGEVVLDA 509 Query: 518 TPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 T FYA++GGQ+GD G + KK HA+ + + ++ + Sbjct: 510 TSFYADSGGQVGDVGWLYSADHNTVVAEVSGCKKPVQGVFAHAVTVKQSIAVGDTVDTVV 569 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 + + R + NH+ THLLH AL +LG+HV Q GS LRFD +H + EL+ + Sbjct: 570 NGEVRAAVMRNHTGTHLLHAALRQVLGTHVKQAGSLNDRARLRFDFSHFTGVADEELQEV 629 Query: 636 EDNVNDIIAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 ED VN + N V T + D GA AL G KY +RVRVV + G S+ L Sbjct: 630 EDIVNRQVLANTLVQTLVDVPIDVAVHELGAMALFGEKYGERVRVVKI-----GDFSTEL 684 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-S 752 CGGTH+++TGEI L+ +V E ++ +G+RR+EA+TG + + D + +A+ Sbjct: 685 CGGTHIAATGEIGLVKLVGEGAVASGVRRVEAVTGTGSLAVFRR-DADVAKVAAQFGAGD 743 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSK 807 ++ RV +E +KL+ + +++ + ++ V ++ + +D Sbjct: 744 ADSLRARVAAQDDEMKKLRRELEQMRMKSASAATADAASSAVEVKGVKVLAQRVDALDKS 803 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 ++++++D L+ K+ SG+++L G + E + S+++ VT+DL+ + A + A +GG G Sbjct: 804 QMRNLVDELRGKLGSGVVVL-GAATEGRVSLIVGVTKDLIGKVQAGKIVGQIAAKVGGKG 862 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP +A++GG + D A+A A + + Sbjct: 863 -GGRPDLAEAGGSDVAALDGALASAAGVVGE 892 >gi|312898889|ref|ZP_07758277.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359] gi|310620051|gb|EFQ03623.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359] Length = 868 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 341/905 (37%), Positives = 503/905 (55%), Gaps = 53/905 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L+FF+ H L S SL+P NDP+L+ +GM P K FTG+ P V Sbjct: 4 MTGNEIRKAYLDFFESKKHLKLHSFSLVPENDPSLLLIGAGMAPLKPYFTGKLVPPSYRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ +LD Sbjct: 64 TTSQKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFLTEVLELD 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +LY+TVY EDEEA+ +W I GL+ ++I ++ DNFW + E GPCGP SEIF+D G Sbjct: 120 TNKLYVTVYPEDEEAYDIWHNIVGLADERIFKL--EDNFWEIGE-GPCGPDSEIFYDLGP 176 Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + + +RY+EIWNLVF QF + L K +IDTG GLER+A+V+Q+ Sbjct: 177 ERGCGKPTCNVGCDCDRYLEIWNLVFTQFNKTKDGSYEPLEKKNIDTGAGLERLASVIQQ 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-NHRVIVDHLRSSSFLIADGILPANEGRG 298 K +N++ DL ++Q V Y +VI DH+R+ + +I DGILP+NEGRG Sbjct: 237 KESNFETDLLFPIMQRVIDVCHGDYNNKEQKIAVKVIGDHIRAVTMMIGDGILPSNEGRG 296 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + R+LG E + L+ + AYPEL + K LI+ + +E+ +F Sbjct: 297 YVLRRILRRAVRFGRVLGIEEAFLADLVDIVIDMYKEAYPELAERKELIKTVIATEEAQF 356 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +GL LL+ ++ +L G+ FKLYDT G P+++ ++I+ G+ ID F Sbjct: 357 SATLAQGLELLNAMIEDADGTGVLAGEKVFKLYDTFGFPVELTEEIVQEHGMT-IDHDGF 415 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++A++ Q+ RARA + + D L Q Sbjct: 416 DKAMKAQQERARAARAKVSAKVA----------------------------TPDTTGLDQ 447 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + N V++ V I G VE A + ++ D+TPF+AE GGQ+GDTG G Sbjct: 448 SALVKDENAVNARVVLIGIDGAAVERAEKDTAITIILDKTPFHAEGGGQIGDTGYITGPS 507 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++TD + A G+ AIV G L + +T+D ++ NH+ATHLL AL Sbjct: 508 GKAEVTDTKSLANGLTYMIAIVTEGSLSRGDEVDITVDKVRNLDIARNHTATHLLQAALR 567 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV+Q GS +TP+ LRFD TH P+T+ EL +E VN I +N+ + M +D Sbjct: 568 KVLGTHVNQAGSLVTPERLRFDFTHFSPMTNEELAEVEKEVNRQIMKNVDLEIEEMPVDD 627 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI GA AL G KY D VRVV+V S LCGG+HV +T I IV ES Sbjct: 628 AIKKGAMALFGEKYGDIVRVVNVPG-----FSCELCGGSHVPNTSVIGSFRIVGESGTGT 682 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA+TG+ A + L+ A+ LK + ++ ++E++ ++ + A+ Sbjct: 683 GIRRIEAVTGKAAHERAVADAVLLQEAATLLKSKEADIPAKIEQLLTALKEAEREVAQLS 742 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +L L + +I V+ + ++ ++ L+ + D + K+ I+L+G + Sbjct: 743 HKLATSSLDDILAAKEEIHGVSVTAASVTVDSAEGLRDMADMVLDKVGG--IVLLGAVQG 800 Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S + V ++L ++A + + +A GGGG GGRP MAQ+GG + K ++A+ Sbjct: 801 DKVSFVCKVDKELTKQGYHAGKIVKAAAVAAGGGG-GGRPDMAQAGGKDPQKLEEALKAG 859 Query: 893 ASFLK 897 ++ Sbjct: 860 KEAVQ 864 >gi|258446862|ref|ZP_05695016.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300] gi|257854437|gb|EEV77386.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300] Length = 876 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 338/914 (36%), Positives = 509/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H +V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ + S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMA-----LFSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S +KV + VV ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|224372192|ref|YP_002606564.1| alanyl-tRNA synthetase [Nautilia profundicola AmH] gi|223588444|gb|ACM92180.1| alanyl-tRNA synthetase [Nautilia profundicola AmH] Length = 853 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 351/900 (39%), Positives = 525/900 (58%), Gaps = 55/900 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FLEFF+ GH++ PS+ L+P +DPTL+FTN+GMVPFK IFTG++ P + Sbjct: 2 DIRKKFLEFFESKGHKVYPSAPLVP-DDPTLLFTNAGMVPFKPIFTGEKPAPEPPRACSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI AW+ +T+ +L + + Sbjct: 61 QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPKEK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 L+IT+++ D+EA K+W+K + ++I+++ DNFW M +TGPCGPCSEI FDQG + Sbjct: 121 LWITIHESDDEAGKIWEKY--VPKERIVKMGDKDNFWQMGDTGPCGPCSEIHFDQGADKF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+ + + LPK SIDTGMGLER+ + + T+N Sbjct: 179 NSPEDYLGGDGDRFLEIWNLVFMQYNRDESGKLTPLPKPSIDTGMGLERITAIKEGVTSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 YD +F+ L++ ++TG +Y + +HRVI DH+R+ +FL A G+ + EGRGYVLR Sbjct: 239 YDSSIFRPLLEKIVEITGKEYHTDKRGASHRVIADHIRAVTFLTAQGVQFSREGRGYVLR 298 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RR + + LLG EP M ++ L +MG YP L++ K +++T++ E+ERF +T+ Sbjct: 299 RILRRGVRHGYLLGMREPFMYKIVDTLAEQMGEQYPYLLEKKESVKDTIKLEEERFFETI 358 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 D+G+ L + L + +G+VAFKLYDT+G PLD+ QD+L +D+ +FN + Sbjct: 359 DKGMQLFEEELKKTT-GDTFSGEVAFKLYDTYGFPLDLTQDMLREVN-KQVDMKTFNALM 416 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 +EQ+ RARA+ G G KI EK +F+GY+ Sbjct: 417 QEQKDRARANWKGSG---DVKINLKDLEKVENNKFVGYEHTEY----------------- 456 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG----CAIGDG 538 + VKA+ + + E ++G V+ ++TPFYAE+GGQ+GD G Sbjct: 457 ------KTKVKALFDENMNMVETLNG-SGWVMLEETPFYAESGGQVGDKGELRTYPTSQN 509 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 L+I + + V+ +NR +++ NH+ATHLLH AL Sbjct: 510 GELRIVAKVVDTKKFDDKNLSKVVEAELKTGDEVVAKVDENRSEIAKNHTATHLLHAALR 569 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + + LRFD TH K +T EL+SIE+ VN +IA+++P + M+ ++ Sbjct: 570 KVLGEHVTQAGSLVEANRLRFDFTHPKALTKEELESIEEMVNRVIAKSIPAEVKEMSIDE 629 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA AL G KY D VRVV G S LCGGTHV++T E+ YI+ ES + A Sbjct: 630 AKKMGAMALFGEKYGDVVRVVKF-----GDFSVELCGGTHVNNTAEVNSFYIIKESGVSA 684 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ G A + G + ++ + S K ++ VE+ EE +KL+ + + Sbjct: 685 GVRRIEAVAGFGAYRYAKGFRDLVEEIKSENKAK--DLKAFVEKQKEEIKKLKTEIKELE 742 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + V+++ +N++ I + L+ + L+ ++ + + L G +K K ++ Sbjct: 743 -KAAVKEIKPVNKDGINYVIERIDNAN---LREIATDLKGRVDNLVAFLAGENK-GKVTL 797 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + V T +D A DL + A ++ GG GGG+P AQ GG + K D+ IA V L K Sbjct: 798 VAVST---VDSVKAGDLIKNYAPIV-GGKGGGKPDFAQGGGKDSGKIDEMIAQVKKDLIK 853 >gi|312127607|ref|YP_003992481.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311777626|gb|ADQ07112.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 881 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 344/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 3 MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 63 TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHKLKNPNIDTGMGLERIAAIMQE 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + +VT +Y + V+ RVI DH+R + F+I DGILP+NEGR Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ R Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL +L+ + L K++ ILNG++ FK+YDT+G PLD+ ++I +G+ +D Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETILNGEIVFKMYDTYGFPLDLTKEIAAEKGII-VDQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +++Q+ RARA L + + I + E T F+GYD L+ Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLKQ---------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I E A V+ D+TPFYAE+GGQ+ D G Sbjct: 466 -------------EAKILKIFLDNEETAYAKEDDVCFVILDKTPFYAESGGQVADKGILE 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G+ ++ DV+K G +H V +G + S+V +D + R NH+ATHLLH Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG H Q+GS ++PD LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 573 ALRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + + L+ Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLENEV 747 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + +LS + + + D +K + D ++++ S I+L Sbjct: 748 EKYKLLVVENELSSLYSKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKER-DSKAIVLNI 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I + K ++L+ +++ + + + + + VL GG GGGRP AQ GG + K D A Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDVLKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|312875971|ref|ZP_07735960.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311797169|gb|EFR13509.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 883 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 344/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 3 MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 63 TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + +VT +Y + V+ RVI DH+R + F+I DGILP+NEGR Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ R Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL +L+ + L K++ ILNG++AF++YDT+G PLD+ ++I +G+ +D Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +++Q+ RARA L + + I + E T F+GYD L Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLEQD--------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I E V+ D+TPFYAE+GGQ+ D G Sbjct: 467 --------------AKIFKIFLDNEETAYVKEEDVCFVILDKTPFYAESGGQVADKGILE 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G+ ++ DV+K +G +H V +G + S+V +D + R NH+ATHLLH Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG H Q+GS +TPD LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS Sbjct: 633 LDSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + L+ Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEV 747 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + +LS + + + D +K + D ++++ S I+L Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I + K ++L+ +++ + + + + + VL GG GGGRP AQ GG + +K D A Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|325265418|ref|ZP_08132142.1| alanine--tRNA ligase [Clostridium sp. D5] gi|324029419|gb|EGB90710.1| alanine--tRNA ligase [Clostridium sp. D5] Length = 879 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 340/894 (38%), Positives = 501/894 (56%), Gaps = 48/894 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDDAIKWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++W K G+ A++I + DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLDDDEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWN VF QF+ K L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGKGNYVELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ Y + V+ RVI DH+RS +F+I+DGI+P+NEGRGY Sbjct: 241 SIFDVDTIKALRDHVCRLADAAYGNEDNTDVSIRVITDHVRSVTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLL + L + YPEL + K I + + E+E+F Sbjct: 301 VLRRLLRRACRHGRLLNIEGNFLPALAETVIEGSKDGYPELEEKKDFILKVIAKEEEQFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T+D+GLV+L +++ + K L+GD AFKLYDT+G P+D+ ++IL + + +D Sbjct: 361 NTIDQGLVILSDMIAGMEKRGEITLSGDDAFKLYDTYGFPIDLTKEILEEKEM-NVDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ A+E QR ARA + + + + F+GYD L Sbjct: 420 FHAAMEIQRKTARAARGVTNYMGADVTVYESIDPSITSTFVGYDNL-------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + + E+ E G++ + +TPFYA +GGQ D+G Sbjct: 466 ---------VYESEITVLTSETEVAEALSDGERGTIFVKETPFYATSGGQEADSGVIRTP 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D K G H V +G+++T L +D + R + NHSATHLL AL Sbjct: 517 EGEFKVEDTIKLLGGKIGHVGHVVKGMVKTGDKAELAVDARKRSLSARNHSATHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG+HV Q GS + D LRFD TH ++ ELK +E+ VN+ IA+ LPV + M E Sbjct: 577 RTVLGTHVEQAGSSVNEDRLRFDFTHFSALSQEELKQVENIVNEHIAEALPVDIQNMPIE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV++ S CGGTHV +T EIM I+SE+ + Sbjct: 637 EARKTGAQALFGEKYGDIVRVVNMGG-----FSIEFCGGTHVKNTSEIMAFKIISETGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T Q + + K+ A LK S N+ ++ + E + L Sbjct: 692 AGVRRIEALTSQGLLDYYDALEVKMNEAAKLLKASSDNLAEKITHVMAENKTLHSEVESL 751 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + ++ V ++ + VD L+ + D +++K+ G+++L S Sbjct: 752 KSRLAQDAMGDVMDQVREVKGVKLLAAEVDGVDMNGLRDLGDQMKEKLGEGVVVLASGS- 810 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + K S+++ T+ + +A +L + A ++GGGG GGRP+MAQ+GG N Sbjct: 811 DGKVSLMVTATDGAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGI 863 >gi|254425077|ref|ZP_05038795.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335] gi|196192566|gb|EDX87530.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335] Length = 887 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 335/905 (37%), Positives = 496/905 (54%), Gaps = 49/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL F++ GH +L S+SL+P DPT++ T +GM+PFK IF GQ + T Sbjct: 19 SGADIRKQFLSFYEARGHRILDSASLVPE-DPTVLLTIAGMLPFKPIFLGQRSVEFDRAT 77 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI AW+L T+ F L Sbjct: 78 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKAQAIAWAWELSTEIFKLPA 133 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+ +++ +D+EAF +W+ G+ ++IIR+ DNFW TGPCGPCSE+++D Sbjct: 134 DRIVPSIFRDDDEAFAIWRDEIGIPENRIIRMGEADNFWKSGPTGPCGPCSELYYDFHPE 193 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ N Sbjct: 194 -RGDDTIDLEDDTRFIEYYNLVFMQYNRDAEGNLEPLQAQNIDTGLGLERMAQILQGVPN 252 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQA+ Q+ + Y V+ +VI DH+R+ ++ADGI +N GRGY Sbjct: 253 NYETDLILPIIQAAAQIANLDYHQATDAQKVSLKVIGDHVRAVMHMVADGISASNVGRGY 312 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RLLG P + AYP + + I+ L E+ +F Sbjct: 313 VLRRLIRRVVRHGRLLGIDRPFTTEVAERSIALTEDAYPAVRTRETAIKNELDREETQFL 372 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RG L +L+ + + ++G AF+LYDT+G PL++ Q+I G+ +D F Sbjct: 373 QTLARGEKRLADILAE--QPKQVSGKDAFELYDTYGFPLELTQEIAEESGIT-VDTERFE 429 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +QR R++A + + +L E+ +T+FIGY L Sbjct: 430 IEMSQQRERSKAAHETIDLTVQSSLD-TLAEQIDSTEFIGYQRLNS-------------- 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+AI+ GE V+ A +G V++V DQTPFYAE+GGQ+GD G GD + Sbjct: 475 ---------QSRVEAILINGESVDLAETGDDVQIVLDQTPFYAESGGQIGDRGYLSGDTV 525 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV+K+ FVH VERG L + + ID RR+ NH+ATHLL AL + Sbjct: 526 VIRIEDVKKEGAF-FVHFGKVERGSLTVDSQVSAQIDRACRRRAQANHTATHLLQAALKS 584 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +SQ GS + D LRFD + +T +L+ +E VN IA+ + M +A Sbjct: 585 LVNESISQAGSLVDFDRLRFDFHCPQALTPEQLQQVEKQVNSWIAEAHDADVQTMPIAEA 644 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY D VRV+ S LCGGTHVS+T EI + I+SE+ I AG Sbjct: 645 KAKGAVAMFGEKYGDEVRVIDYPG-----VSMELCGGTHVSNTAEIGVFKIISETGIAAG 699 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L +D ++ L++ K + RV + E + Q A K Sbjct: 700 IRRIEAVAGPAVLDYLEVRDRIVRDLSARFKTKPEEISDRVTALQTELKNAQKDLAALKS 759 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + I + + + V++ LK+ + L +K+ G ++L + E Sbjct: 760 ELALAKSDQLLNKAEAIGGIPIIVANLEAVEADALKTAAERLLQKLGDGAVVLGSVPTEG 819 Query: 835 KASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S++ ++ ++ A AK+ GGGG GGRPH AQ+GG + K +A+ Sbjct: 820 KVSLVAAFSKPVISKGLQAGKFIGGIAKLTGGGG-GGRPHFAQAGGRDATKLPEALEVAK 878 Query: 894 SFLKK 898 +K+ Sbjct: 879 DQIKE 883 >gi|291542143|emb|CBL15253.1| alanyl-tRNA synthetase [Ruminococcus bromii L2-63] Length = 877 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 324/910 (35%), Positives = 496/910 (54%), Gaps = 52/910 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ +R FLEFF+ G LPS SL+P +D +L+ NSGM P K FTG+ P Sbjct: 1 MKWTGLNELREKFLEFFESKGCLRLPSFSLVPKDDNSLLLINSGMAPMKKYFTGEVTPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R D++ VG T RH TFFEMLGNFSFG YFK A AW+ TK Sbjct: 61 KRVTTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFGDYFKHEATAWAWEFFTKVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ +LY+++Y++D+EAF +W K G+ ++R+ DNFW +GPCGPCSEI+FD Sbjct: 117 EMPPEKLYVSIYEDDDEAFDIWTKEVGVDPSHMVRLGKEDNFWEHG-SGPCGPCSEIYFD 175 Query: 179 QGECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +G+ G P E +R++E+WNLVF QFE K L +IDTGMGLER+A V Sbjct: 176 RGDEKGCGRPDCHVGCECDRFVEVWNLVFTQFESDGKGNYTPLEHPNIDTGMGLERLACV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q N + +D +++++ Q+TGM+Y N V+ RVI DH+RS++F+I DG+LP+N Sbjct: 236 MQGVDNLFLVDTIQNIMKHISQITGMEYGKNEKSDVSLRVITDHIRSTTFMIGDGVLPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EG+GYVLRR++RRA + RLLGY EP + + + E +AYPEL + + I + ++ E Sbjct: 296 EGKGYVLRRLLRRAARHGRLLGYNEPFLYKVCDTVIKENLTAYPELKEKQEFITKVIKVE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F KT+D+G +L+G++ ++L+G+ AFKL DT+G P+D+ ++IL +G+ +D Sbjct: 356 EESFAKTIDQGFKMLNGIMDS-EDVKVLSGEDAFKLNDTYGFPIDLTREILSEKGIK-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F + ++EQ+ R+R G+ L + T+F+GY L+ Sbjct: 414 VERFRELMKEQKKRSRDARKNAGADAWISDATDLSD-VANTEFVGYTDLKS--------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +S V AIV+ G V+ G+ +V D+TPFY E GGQ+GDTG Sbjct: 464 --------------TSKVLAIVKDGVRVDSIGEGENAIIVLDKTPFYGEGGGQVGDTGVM 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + K G HA + G + + +D + R ++ NH+A HLL Sbjct: 510 ESGSFSADVDNTTKNPSGTIYLHACTVKSGSINVGAEVSTAVDEERRADITRNHTAAHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG+HV Q G ++ D RFD TH + +T+ EL +++ VN I + +PV T+ Sbjct: 570 QSALREVLGNHVQQAGQLVSDDYFRFDFTHFEALTAKELIEVQNLVNKKILEAIPVTTQE 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M E+A GA AL G KY D VRVVS G S CGGTHV +T + L I E Sbjct: 630 MPIEEAKKLGAMALFGEKYGDVVRVVS-----AGDFSVEFCGGTHVKNTANLGLFRIRQE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQL 772 S+ AG+RRIEA+TG ++ G + + S LK + VV V++ + ++ Q Sbjct: 685 GSVAAGVRRIEALTGMGVLKYINGMSAVIMDVCSLLKIANPKAVVEGVQKAEQLIKEQQR 744 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + +L V + + V ++ I + ++ L+++ + + + +L Sbjct: 745 EINELNSKLAVAQIGQLFAGTTEENGVRVVTGRIDKANADILRTMCEKARDFAPKCVCVL 804 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K + ++ L NA + + A+ GG GGG+P MA +G K Sbjct: 805 A-TENDGKVTFAAACGKEALALGANAGKIIKAVAQK-AGGNGGGKPDMAMAGAKQPEKIS 862 Query: 887 QAIAGVASFL 896 +A+ V + Sbjct: 863 EALDSVKETV 872 >gi|126660159|ref|ZP_01731277.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110] gi|126618524|gb|EAZ89275.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110] Length = 879 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 335/906 (36%), Positives = 505/906 (55%), Gaps = 48/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+F+ + H++LPS+SLIP DPT++ T +GM+PFK IF GQ++P + T Sbjct: 9 TGNQIRDRFLQFYAQQNHQILPSASLIPE-DPTVLLTIAGMLPFKPIFLGQKQPDFPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L T+ + L Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTQVYQLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V++ D+EAFKLW+++ G+ +I R+ DNFW TGPCGPCSE+++D Sbjct: 124 ENIVVSVFENDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFM++ + + L K +IDTGMGLERMA +LQ+ N Sbjct: 184 -RGEESIDLEDDSRFIEFYNLVFMEYNRDVEGNLTPLQKKNIDTGMGLERMAQILQKVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + + Y + +VI DH+RS +I+DGI +N RGY Sbjct: 243 NYETDLIFPIIETAANIANINYHKATEKTKVSLKVIGDHVRSVVHMISDGITASNTDRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + AYP++ + + I+ L E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGIEGQFINQVAETAIQLSQKAYPQVRERESFIKGELEREETAFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RG LL ++ K ++G AF LYDT G P ++ Q+I L F Sbjct: 363 KTLERGEKLLAEIIEKTEKQGQISGVDAFTLYDTFGFPFELTQEIAEESNLTVNIKE-FE 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +++Q+ R++A + T + L E T+F+GY L+ Sbjct: 422 AEMKQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G G+ + Sbjct: 466 --------LTAKVEAVLIQGKSVDIAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGENL 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ DV +K GIFVH VERG + ++ TID RRQ+ NH+ATHLL AL Sbjct: 518 VIRVDDV-QKESGIFVHFGRVERGQIAINDNVKATIDRACRRQVQANHTATHLLQAALKK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + +SQ GS + D LRFD + +TS EL+ IED +N IA+ T +M E A Sbjct: 577 VVDNSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHDTETAVMPLETA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY+ VRV+ V S LCGGTHV +T EI L I+SES I +G Sbjct: 637 KEKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L ++ +K L K+ + R+ + E + Q K Sbjct: 692 IRRIEAVAGPAILEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQKQLEAVKQ 751 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 L V I + + + E+D+K L++ + LQ+K+ G ++L I E Sbjct: 752 DLAVAKSDQLLNEAETIGEFKLLVSDMGELDAKALQTAAERLQQKLGEGAVILGSIPSEG 811 Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ ++ + + A AK+ GGGG GGRP++AQ+GG +K +A++ Sbjct: 812 KVSLVAAFSKKVNKEKQLQAGKFIGQIAKICGGGG-GGRPNLAQAGGREPSKLSEALSTA 870 Query: 893 ASFLKK 898 L + Sbjct: 871 KQQLIE 876 >gi|222529322|ref|YP_002573204.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222456169|gb|ACM60431.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 883 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 350/909 (38%), Positives = 524/909 (57%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 3 MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 63 TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 178 EKGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + +VTG Y + V+ RVI DH+R + F+I DGILP+NEGR Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ R Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL +L+ + L K++ +LNG++AFK+YDT+G PLD+ ++I +G+ ID Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +++Q+ RARA L + + I + E T F+GYD L+ Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLKQ---------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I E A V+ D+TPFYAE+GGQ+ D G Sbjct: 466 -------------EAKILKIFLDNEEPAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G+ ++ DV+K G +H V +G + S+V +D + R NH+ATHLLH Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLAAMKNHTATHLLHS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG H Q+GS +TPD LRFD H +P++ +L IE+ VN+II Q +PV + + Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEEMVNNIIQQAIPVEKIVTD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + + L++ Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEI 747 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + +LS + + + D +K + D +++K S I+L Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKEK-DSKAIVLNI 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K +VL+ +++ + + + + + VL GG GGGRP AQ GG + +K D A Sbjct: 807 LEQSSKVTVLMSCSKEAVKKGVDCGKVVKEICSVL-GGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 VQTAENILK 874 >gi|242242892|ref|ZP_04797337.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144] gi|242233667|gb|EES35979.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144] Length = 876 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 344/911 (37%), Positives = 515/911 (56%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 4 MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K Sbjct: 64 VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 ++ +LY+T++ ED EA+++W + GL +IIRI NFW + E GP GP +EIF+D+ Sbjct: 120 MEPEKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176 Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G P E ERY+E+WNLVF +F LP +IDTGMGLERM + Sbjct: 177 GLAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293 + Q NY+ DLF +I+ E V+G KY ++ V +VI DH+R+ SF IADG LPA Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ ++S Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ L+ Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ +F Q +++QR RAR S + LK +QF+GY+ Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDDSQFVGYETTDY------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S++ I+ GE V+ A +G+ + + +TPFYA +GGQ+ D G Sbjct: 467 ----------------QSLLTHIIYNGEEVKHAEAGETIYFILRETPFYAVSGGQVADKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + +TDV K G +H +V+ G + ++ ++RR + NHSATHL Sbjct: 511 TVGNENFEINVTDVTKAPNGQNLHKGVVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I + + V + Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T EI L IVS Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771 ES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ EE ++L Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQLQEEEKELL 745 Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +R L+L + I D+ ++ + + K ++S+MD + K+Q II+ Sbjct: 746 KQLEQRNKEITSLKLGNIEEQVELINDLKVLATEVEIPNPKAIRSIMDDFKSKLQDTIIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LVG + K SV+ V + L ++ A DL + ++ GG GGGRP MAQ GG K Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863 Query: 887 QAIAGVASFLK 897 +A+ + ++K Sbjct: 864 EALRFIKDYIK 874 >gi|6707748|sp|Q9XDM3|SYA_AQUPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4587716|gb|AAD25871.1|AF027500_1 alanyl-tRNA synthetase [Aquifex pyrophilus] Length = 871 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 359/902 (39%), Positives = 531/902 (58%), Gaps = 48/902 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY++VY +DEEA+++W + G+ +++I R+ DNFW M +TGPCGP SEI+ D+GE Sbjct: 124 ERLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDTGPCGPSSEIYVDRGEE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G RY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K + Sbjct: 184 YEGEE--------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N++ID+ LI+ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV Sbjct: 236 NFEIDIIYPLIEFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RRI+RRAM + LG TEP + + + M YPEL ++ ++ ++ E+ERF + Sbjct: 296 IRRILRRAMRFGYQLGITEPFLYKGIDLVVDIMKEPYPELELSRDFVKGIVKGEEERFIR 355 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ + V+ + L G F YDT+G P+D++Q+I +GL ID+ F Sbjct: 356 TLRSGMEYIQEVIEKALSEGRKTLTGKEVFTAYDTYGFPVDLIQEIAKEKGLE-IDLEGF 414 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 LEEQR RAR + + + ++ LKE ++F+GY+ L Sbjct: 415 QCELEEQRERARKS-FKIETKEVKPVYAHLKELGITSRFVGYEHLEY------------- 460 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + V I+ EIV E G++ E++ +TPFY E GGQ+GD+G D Sbjct: 461 ----------ETEVLGIIVGDEIVSEIKEGEEGEIILRETPFYPEGGGQIGDSGIIETDK 510 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ D Q+ EGI VH + +G + + + +D + R + NH+ATHLLH AL Sbjct: 511 GIFKVEDTQRPTEGIIVHIGKLLKGKISVKDIVHARVDKERRWDIMRNHTATHLLHAALR 570 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + LRFD TH P+T E+K IE+ VN+ I +NLPV M ++ Sbjct: 571 NLLGEHVRQAGSLVADKYLRFDFTHFSPLTEEEIKRIEELVNEKIRENLPVSVMEMAYQE 630 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ +GA A+ KY +RVRV+S G S LCGGTHVS+TG+I I+SESS+ A Sbjct: 631 ALQTGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGA 685 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRI A TG+ A + + LK +++ L V + VV +VEE+ EE ++ + K + Sbjct: 686 GVRRIVAQTGRWAVNTAFEEHTTLKKVSNALGVKEDEVVQKVEELKEEIKEKEKEIQKLR 745 Query: 779 LQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 ++ E + + ++ + +V+ +EL+++ D L+++ ++ + KE Sbjct: 746 QEILKLQIREKVKEERHRELTLYYGVFEDVEPEELRNLADILRQRTGKDVVFIAS-KKEG 804 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K + +I ++ + A +L R KVL GGG GGR +AQ GG +K D+++ + Sbjct: 805 KINFVIASSKGISKEVRANELIRQVGKVLKGGG-GGREDLAQGGGKAPDKFDESVKLLKE 863 Query: 895 FL 896 L Sbjct: 864 LL 865 >gi|270290968|ref|ZP_06197191.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4] gi|270280364|gb|EFA26199.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4] Length = 881 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 325/915 (35%), Positives = 501/915 (54%), Gaps = 60/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IR +L+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 4 KSSSEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRL 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QK +R ND++NVG T RHHT FEMLGNFS G YFKE AI AW+LLT + FD Sbjct: 64 TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +D +LY+TVY +DEEA K+W + +G+ I+ DNFW + E GP GP SEIF+D+ Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175 Query: 180 GECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 GE E R++EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 176 GEEFNNLADDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 +V Q+ N++ DLF +I E+++G KY + N+ V+ +VI DH R+ +F I DG +P Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVSFKVIADHARAITFAIGDGAIP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYV+RR++RRA+ + + L +P + ++P + M YPE++ K IE+ ++ Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIK 355 Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF +TL GL LL+ +++ ++++G AF+L+DT+G PL++ ++ +G+ Sbjct: 356 SEEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGM 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F +++Q+ RAR+ S + L + ++++GYD L+ Sbjct: 416 E-IDEAGFADEMQKQKERARSARSNAKSMGVQSDL--LTDLKTPSEYVGYDTLKVDA--- 469 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +++K I+Q ++ + G+ V+FD TPFYAE GGQ+ D Sbjct: 470 -------------------AVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509 Query: 531 TGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + + A H I + + S L +D ++ NH+A Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGESFTLIVDRAFHLKVEKNHTA 569 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LG H Q GS + P LRFD TH +T +L+ +E+ +ND I +PV Sbjct: 570 THLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIPV 629 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + E GA AL KY +VRVVSV G +S CGGTHV +T EI L Sbjct: 630 TTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLFK 684 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYR 768 IVSES + AG+RRIEA+T Q A L G++ L+ A LK +V +VE++ + + Sbjct: 685 IVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQVK 744 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L + + ++ +++ +I + ++ + +L+ + D + K QS Sbjct: 745 DLNQTINQLEAKIAQAEVANIYDQVQEINGIRLITAEVQVSGMDQLRQMADDWKTKDQSD 804 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L E KA+++ V + + A DL + A + GG GGGRP+MAQ+GG Sbjct: 805 VLVLGAKIGE-KANLIAAVKDPFVKEGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSAP 862 Query: 883 NKADQAIAGVASFLK 897 K ++A+ + +L+ Sbjct: 863 EKINEALKAASEWLE 877 >gi|319400948|gb|EFV89167.1| alanyl-tRNA synthetase [Staphylococcus epidermidis FRI909] Length = 876 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 342/911 (37%), Positives = 512/911 (56%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 4 MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K Sbjct: 64 VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 ++ +LY+T++ ED EA+++W + GL +IIRI NFW + E GP GP +EIF+D+ Sbjct: 120 MEPEKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176 Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G P E ERY+E+WNLVF +F LP +IDTGMGLERM + Sbjct: 177 GSDYGNDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293 + Q NY+ DLF +I+ E V+G KY ++ V +VI DH+R+ +F IADG LPA Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTIAFAIADGALPA 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ ++S Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +TL+ GL +L+ ++ ++++ G AFKLYDT+G P+++ +++ + Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSNQVIKGHDAFKLYDTYGFPIELTEELAT-QEKLS 415 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ +F Q +++QR RAR S + LK +QF+GY+ Sbjct: 416 VDMSTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDDSQFVGYETTDY------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S++ I+ GE V+ A +G+ + + +TPFYA +GGQ+ D G Sbjct: 467 ----------------QSLITHIIYNGEEVKHAEAGETIYFILRETPFYAVSGGQVADKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + +TDV K G +H IV+ G + ++ ++RR + NHSATHL Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I + + V + Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T EI L IVS Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771 ES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ +E + L Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQLQDEEKGLL 745 Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +R L++ + I +V ++ + D K ++S MD + K+Q II+ Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNVKVLATEVEIPDPKAIRSTMDDFKSKLQDTIIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LVG + K SV+ V + L ++ A DL + ++ GG GGGRP MAQ GG K Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863 Query: 887 QAIAGVASFLK 897 +A+ + ++K Sbjct: 864 EALRFIKDYIK 874 >gi|238018985|ref|ZP_04599411.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748] gi|237864469|gb|EEP65759.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748] Length = 871 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 334/903 (36%), Positives = 496/903 (54%), Gaps = 55/903 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+ Y N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CKTNFETDLIYPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIESIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR RAR + + LK++ +LL Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE---------ELLEDEAV------- 456 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +S V I + E ++ A G ++ V+ TPF+AE GGQLGDTG + Sbjct: 457 ------------TASSVLMIGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A + ++ +A LK V R+ ++ E ++ Sbjct: 680 IGSGVRRIEAITGRAALNAAKHDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELE 739 Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +++ + I DV F++ + EL+ + D ++ SG++++ Sbjct: 740 QIRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++D++ + A ++ + +A+ + GG GGGRP MAQ+GG K +A Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLAEA 858 Query: 889 IAG 891 + Sbjct: 859 LKA 861 >gi|269792643|ref|YP_003317547.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100278|gb|ACZ19265.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 882 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 333/912 (36%), Positives = 512/912 (56%), Gaps = 51/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL FF++ G PS+SL+P +DP+L+FT +GMVPFK F G ++P Sbjct: 1 MKWRSGNELREMFLSFFEEKGCVRYPSASLVP-DDPSLLFTIAGMVPFKPYFLGIKEPKE 59 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R ND+DNVGRT RHHTFFEMLGNFSFG YFK I AW+ LT+ Sbjct: 60 RRVTTAQKCIRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWEFLTQRV 115 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +D RLY+TV+ +D+EA +W G+ D+I R+ DNFW+ GPCGPCSEI +D Sbjct: 116 GMDPDRLYVTVFRDDDEAESIWMSSVGVPKDRIFRMGEEDNFWAAGPVGPCGPCSEIIYD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 QG G P + +RY+E+WNLVFMQ+ + LP+ +IDTGMGLER+++V Sbjct: 176 QGPEFSCGKPSCGVGCDCDRYLEVWNLVFMQYNRDEAGNLTPLPRKNIDTGMGLERLSSV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q ++++ DLFK +I + Q++G+ Y + RVI DH+R+++F++ADG+LP+N Sbjct: 236 VQWVRSDFETDLFKPIIDRACQISGVAYGSSPQGDLAVRVISDHIRAAAFMVADGVLPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EG GYVLRR++RR + + RLLG P ++ +LP + MG Y EL++ + I + L E Sbjct: 296 EGPGYVLRRLIRRTIRFGRLLGIDRPFLLEVLPVVEQVMGGHYGELVEHRSTINQVLELE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + RF +TL++G LL+ + + + G+VAF+LYDT+G PL++ ++ +GL+ Sbjct: 356 ESRFLRTLEQGSALLEEEVRRVRSRGLSVFPGEVAFELYDTYGFPLELTSEMCQEQGLS- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +DI +F +A+E QR AR+ S + T ++ + K G +FIGYD G Sbjct: 415 VDIEAFERAMERQRELARSGSKHASAAVTRTVYSDVL-KAGRIRFIGYDSEEG------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+V++GE+++ A G +VEV D TPFY E GGQ+GD G Sbjct: 467 ----------------EARVVALVREGEMIQSAREGDRVEVFLDVTPFYGEKGGQVGDRG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 DG Q+ D Q +G+ H A + +G LR + +D + R + +H+ATH+ Sbjct: 511 EIRWDGGLAQVEDAQCPMDGLTSHLATLVQGELRVGQRVFCRVDGERRWHIRRHHTATHI 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q+GS + RFD H P++ E+ +ED VN +I ++ V T Sbjct: 571 LHEALGRVLGGHVRQSGSWVGDGFFRFDFNHFSPLSDEEIARVEDLVNQVILEDRRVTTL 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + + A GA AL KY VRVVSVE S+ LCGGTHVSS+G+I L I Sbjct: 631 ETSMDSAREMGAKALFDEKYGQVVRVVSVEG-----FSTELCGGTHVSSSGQIGLFKIQR 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I +G+RRI A G + E +K +S L V V R+ ++ E + L+ Sbjct: 686 EEGIGSGLRRITATAGLASLEAYRRAAEVVKGASSALGVEAETVRDRIMDLMREVKSLER 745 Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + +LQ+ E L ++ + +S + + EL+++ D++++ + +L Sbjct: 746 ELRQLRLQVKSEGLKRALEAPQEVKGIKVLSFLTEDSSPDELRAMGDSVREMYPDSVCVL 805 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K V+++ ++ + A L + L G GG+ + AQ GG ++ + Sbjct: 806 IS-RNGGKFMVIVMCSDGAVSKGVKAGSLIKSLGA-LWGFNAGGKANTAQGGGEWTDRME 863 Query: 887 QAIAGVASFLKK 898 + + + + Sbjct: 864 GLLRSMEEQVSQ 875 >gi|164688540|ref|ZP_02212568.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM 16795] gi|164602953|gb|EDQ96418.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM 16795] Length = 879 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 350/908 (38%), Positives = 542/908 (59%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F +FF+ GH + SSSLIP ND +L+ NSGM P KN F+G E P + Sbjct: 4 MGCNEIRKSFTDFFESKGHYIGKSSSLIPKNDKSLLLINSGMAPLKNYFSGVEVPPKNRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +TVQKC+R G D++NVG+T RH TFFEM+GNFSFG YFKE AI+ AW+ +TK ++ Sbjct: 64 STVQKCIRTG----DIENVGKTARHGTFFEMMGNFSFGDYFKEDAIKWAWEFVTKHLEIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +++ TVY D+EA LW K S + ++I+R+ +DNFW + GPCGPCSE+++D+GE Sbjct: 120 EDKIWATVYLNDDEAHDLWLKYSSIPEERIVRLGKDDNFWEIG-LGPCGPCSELYYDRGE 178 Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +RY+E WNLVF QF++Q L +IDTGMGLER+ ++Q+ Sbjct: 179 QYGCDNPDCKPGCDCDRYLEFWNLVFTQFDRQEDGSYPELAHKNIDTGMGLERIGCIMQD 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D + +I E+V+G+KY + + V+ R+I DH+R+ SF+IADGILP+NEGR Sbjct: 239 VDNIFEVDTIRAIIDEIERVSGVKYGVDAKSDVSIRIITDHIRAMSFMIADGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG E + +L + G AYPEL++ + I++ ++ E+E+ Sbjct: 299 GYVLRRLLRRAARHGKLLGIKEDYLYNLFDVVKEVSGEAYPELVEKEGYIKKVIKIEEEK 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D+G +L+G + L + L G+ FKLYDT+G P+D+ Q+IL G +D Sbjct: 359 FNETIDQGSEILNGYIEELKANNESTLAGEKVFKLYDTYGFPMDLTQEILEEVGF-DLDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN +++QR RAR+ + + ++ S + A+ F GY L Sbjct: 418 EGFNTEMDKQRERARSARGNMEGESWKEDPLSTLDSSVASTFCGYKHL------------ 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + +V AIV+ EIV+ G K +V D+T FYAE GGQ+GD+G Sbjct: 466 -----------STTGVVNAIVKDDEIVDSITEGDKAIIVLDRTTFYAEGGGQVGDSGILE 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++ +K A H IV++G + T+ L ++ + R + NHSATHLLH Sbjct: 515 NENAVFEVITTKKGANNTIKHIGIVKKGSINTKDELKSLVNREIRMASARNHSATHLLHK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS +TP+ LRFD+TH +PI+ EL +E VND+I Q+L + +M Sbjct: 575 ALKETLGEHVNQAGSLVTPERLRFDITHFEPISKEELDIVERKVNDVILQSLDIDCEVMG 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A GA AL G KY + VRVVS+ G +S LCGGTH+++T ++ L I+SE Sbjct: 635 INEAKEKGAMALFGEKYGNEVRVVSM-----GDYSIELCGGTHLNNTSQVGLFKILSEGG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEAITG+ +L +DE ++ + LK + N+V RV + EE + L Sbjct: 690 VAAGVRRIEAITGRSVYEYLNNRDELIEETCNALKTKEDNLVHRVNALVEENKSLTKELH 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +++++ S ++ VN ++ ++D LK + D L+ K+QSG++ + + Sbjct: 750 DVKAKMSLQSADKLMDSKVEVNGVNLVTAKFEDMDMNSLKEMADNLRDKLQSGVVAISNV 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + K + ++ T+D++DR ++ ++ + AK+ GG G GGRP+MAQ+G + K D+A+ Sbjct: 810 S-DSKVNFVVTATKDVIDRGIHSGNIVKEIAKIAGGKG-GGRPNMAQAGATDATKIDEAL 867 Query: 890 AGVASFLK 897 + +K Sbjct: 868 SYACEVIK 875 >gi|291544162|emb|CBL17271.1| alanyl-tRNA synthetase [Ruminococcus sp. 18P13] Length = 883 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 321/908 (35%), Positives = 496/908 (54%), Gaps = 50/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL FF+ GH + S+SLIP D +L+ NSGM P K F GQ P VTT Sbjct: 6 LNELREKFLSFFESKGHTRMDSASLIPQGDNSLLLINSGMAPLKKYFLGQATPPNVRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++ VG+T RH T+FEMLGNFSFG YFK AI+ AW+ TK +L Sbjct: 66 CQKCIRT----PDIERVGKTARHGTYFEMLGNFSFGDYFKTEAIEWAWEFFTKVLELPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY++VY++D+EA+ +W K G++ D + R+ DNFW +GPCGPCSEI+FD+G Sbjct: 122 KLYVSVYEQDDEAYDIWIKHIGVAPDHMTRLGKEDNFWEHG-SGPCGPCSEIYFDRGPEK 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +R++E+WNLVF QF K + +IDTGMGLER+A V+Q Sbjct: 181 GCGSPDCKVGCECDRFVEVWNLVFSQFNSDGKGHYAEMEHKNIDTGMGLERLACVMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D ++++Q ++ G+ Y + V+ RVI DH+RS++F++ DG+ PANEGRGY Sbjct: 241 NLFEVDTVQNIMQHICRIAGITYKEDPKKDVSLRVITDHVRSTTFMVGDGVTPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VL+R++RRA + ++LG EP + + + E +AYPEL + K LI + +R E+E F Sbjct: 301 VLKRLLRRAARHGKMLGIQEPFLYQVAETVIHENENAYPELAEKKDLICKIIRHEEESFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+G LL+ L + D +L+G AFKL DT+G PLD+ +I RG+ +D Sbjct: 361 KTIDKGTELLNMFLDRVSSDSLSMLSGADAFKLSDTYGFPLDLTMEIAAERGIK-VDEDK 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + +E+Q+S ARA + + T+F+GY + Sbjct: 420 FRELMEQQKSMARADRASKVKTSWSNESIADI-SAPKTEFVGYTQM-------------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + I G+ V+ G ++ D+TPFYAE+GGQ+ DTG +G Sbjct: 465 ---------SCGAKILGIFADGKQVDSIREGDVAALILDRTPFYAESGGQVADTGEIVG- 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + DV+K G F+H +E GIL+ + ID R + NH+A HLL AL Sbjct: 515 NGAFAVADVKKLESGHFMHMGSLEDGILKVGDEVSAQIDADRRMSIMRNHTAAHLLQAAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q G + + RFD +H +TS EL+++ED VN I + LP+ + M E Sbjct: 575 RQVLGDHVHQAGQLVNAEHCRFDFSHFNAMTSEELQAVEDLVNRKIFEALPITMQEMPIE 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY + VRVVS+E S+ CGGTH+ +T + L I+SESS+ Sbjct: 635 EARKLGAMALFGEKYGNIVRVVSMEG-----FSTEFCGGTHLDNTSRVGLFKILSESSVA 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG ++L AS LK+ + +V R + E ++ + Sbjct: 690 AGVRRIEAVTGTGVLKSYQEMQQRLHFAASALKLGNPLELVERCTAMIAELKEKEHQIDA 749 Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 +++ +S +I+ V +S + + L+ + D ++ ++ I+ + Sbjct: 750 LNMKIADSQISGLFENAKEISGVRVISAFFNGTGADMLRQMGDQVKDRLDGNIVAVFAGM 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +K + V ++ + + +A + + + + GG GGGRP A +G D+A+A Sbjct: 810 NGEKGTFYCVCGKEAVKKGAHAGKIVQRVSA-ITGGKGGGRPDSAMAGIGKQYMVDEALA 868 Query: 891 GVASFLKK 898 + + + + Sbjct: 869 ALDAIVGE 876 >gi|205830241|sp|Q31PW3|SYA_SYNE7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 876 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 345/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ T Sbjct: 7 SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + Sbjct: 66 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 122 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ N Sbjct: 182 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQA + Y + + +VI DHLR+ + LIADG+ +N GRGY Sbjct: 241 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G P + M + YP L + + I+ L E++RF Sbjct: 301 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG L + + G+ AF LYDT+G PL++ Q+I +GL +D+ F Sbjct: 361 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR R++A + T + L E+ T+F+GY Sbjct: 418 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPTEFVGY------------------- 457 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 458 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV +K G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 514 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V S LCGGTHV++T EI L I+SE+ + +G Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 687 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G +L +D ++ L+ K + RV + EE + Q K Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833 +L + + D + ++ VD+ L++ + LQ+K+ G ++L +E Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K +++ ++ + A AK+ GGGG GGRP++AQ+GG + +K +AIA Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 866 Query: 893 ASFLK 897 LK Sbjct: 867 LDQLK 871 >gi|81299685|ref|YP_399893.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942] gi|81168566|gb|ABB56906.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942] Length = 899 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 345/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ T Sbjct: 30 SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 88 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + Sbjct: 89 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 144 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 145 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 204 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ N Sbjct: 205 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 263 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQA + Y + + +VI DHLR+ + LIADG+ +N GRGY Sbjct: 264 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 323 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G P + M + YP L + + I+ L E++RF Sbjct: 324 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 383 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG L + + G+ AF LYDT+G PL++ Q+I +GL +D+ F Sbjct: 384 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 440 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR R++A + T + L E+ T+F+GY Sbjct: 441 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPTEFVGY------------------- 480 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 481 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 536 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV +K G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 537 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 595 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 596 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 655 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V S LCGGTHV++T EI L I+SE+ + +G Sbjct: 656 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 710 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G +L +D ++ L+ K + RV + EE + Q K Sbjct: 711 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 770 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833 +L + + D + ++ VD+ L++ + LQ+K+ G ++L +E Sbjct: 771 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 830 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K +++ ++ + A AK+ GGGG GGRP++AQ+GG + +K +AIA Sbjct: 831 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 889 Query: 893 ASFLK 897 LK Sbjct: 890 LDQLK 894 >gi|29833392|ref|NP_828026.1| alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680] gi|41018194|sp|Q827S4|SYA_STRAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29610515|dbj|BAC74561.1| putative alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680] Length = 890 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 335/924 (36%), Positives = 510/924 (55%), Gaps = 64/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L F+++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFYEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY +D+EA +W+ G+ A++I R+ DN+WSM GPCGPCSEI Sbjct: 116 GYGLDPERLWITVYLDDDEAETIWRDKIGVPAERIQRLGKKDNYWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + LP+ +IDTG+G+ Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKDDFEILGDLPQKNIDTGLGM 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +IQ + ++TG++Y + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIQKATELTGVEYGAAHGSDVSLRVVTDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDVVIAMMGQQYPELISDRQRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G +LD + + ++L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETKASGGQVLPGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + G T FIGY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQSKKTGHADLGAYREIADAAGETDFIGYTQTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + I+ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTIVGILVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + G +++ D QK G++VH +V+ G + ++ID + R+ ++ Sbjct: 511 GQIGDTGRIKVESGAIIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQVSIDVRRRKAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + + + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTTVMTDVEQQINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + + +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQIQELVKGRPEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + + + + ++ S + + ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIERFRAEKVLQAAAGLVDSAKDVRGIALVTGQVPDGTTADDLRRLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 +IQ G ++ L K +I E +R A DL R +AK LGGGG GG+P + Sbjct: 806 RIQGGRPAVVALFTTV-GGKPLTVIATNEAARERGLKAGDLVRAAAKTLGGGG-GGKPDV 863 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ GG N +AI V + + Sbjct: 864 AQGGGQNPAAIGEAIDAVERLVTE 887 >gi|225377640|ref|ZP_03754861.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM 16841] gi|225210504|gb|EEG92858.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM 16841] Length = 886 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 346/911 (37%), Positives = 512/911 (56%), Gaps = 54/911 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 8 NELRRMYLEFFESKGHLKMNSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK L++ R Sbjct: 68 QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVLGLEEDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFD 178 LY ++Y ED+EAF +W K G+ A++I R DNFW GPCGPCSEI++D Sbjct: 124 LYPSIYGEDDEAFNIWTKEVGVPAERITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 182 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +R++E+WN VF QFE K L + +IDTGMGLER+A V Sbjct: 183 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVV 242 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +DID K + +++G KY + + V+ R+I DH+RSS+F+I+DGI+P+N Sbjct: 243 MQDVDSVFDIDTMKAIRDRVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSN 302 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + R+LG M L + E YPEL + K I + L E Sbjct: 303 EGRGYVLRRIIRRAARHGRMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQE 362 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F KT+D+GL +L+ + + ++L+GD AFKLYDT+G P+D+ +IL +G Sbjct: 363 EEKFAKTIDQGLAILEDMEKEMIASGSKVLSGDNAFKLYDTYGFPMDLTSEILEEKGFT- 421 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E QR+ AR + + + + T+F+GYD L + Sbjct: 422 IDEDGFKKAMEVQRTTARKNRKTTNYMGADATVYDEIDPSVTTEFVGYDKLETA------ 475 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + + EIVE G+ ++ ++TPFYA GGQ GD G Sbjct: 476 -----------------STVTVLTSETEIVEALSDGEIGTIIVEETPFYATMGGQQGDKG 518 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K G H + G++++ + L++D R + NHSATHL Sbjct: 519 VIYTADGTFKVEDTIKLLGGKVGHVGKMTSGMIKSGDKVTLSVDADLRGKTCKNHSATHL 578 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q GS + RFD +H + +T+ E+ +E VND IA +L V T Sbjct: 579 LQKALREVLGTHVEQAGSYQDAERTRFDFSHFQAMTAEEIAKVEKIVNDEIAADLEVRTD 638 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M E+A +GA AL G KY ++VRVVS+ G S CGGTHV TGEI I+S Sbjct: 639 VMTVEEAKKTGAMALFGEKYGEKVRVVSM-----GEFSKEFCGGTHVKHTGEIAAFKIIS 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+TG ++ + +L+ A K + +V ++E + E + L Sbjct: 694 ESGVAAGVRRIEALTGDNVFAYYKNIEAELERAAKAAKTTPAALVEKIEHMMAEIKALNA 753 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K + E L ++ V ++ ++ VD L+ + D L+ K+ G+++L Sbjct: 754 ENESLKSKAAKEALGDVMDQVVEVKGVKLLATSVAGVDMNGLRDLGDQLKGKLGEGVVVL 813 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K +++ + TE+ + + +A +L + A +GGGG GGRP+MAQ+GG N Sbjct: 814 AS-EADGKVNLVAMATEEAMKKGAHAGNLIKAIAGKVGGGG-GGRPNMAQAGGKNPAGIP 871 Query: 887 QAIAGVASFLK 897 A+A L+ Sbjct: 872 DAVAEAKVALE 882 >gi|291563232|emb|CBL42048.1| alanyl-tRNA synthetase [butyrate-producing bacterium SS3/4] Length = 884 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 336/906 (37%), Positives = 512/906 (56%), Gaps = 41/906 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI AW+ LT+ + Sbjct: 66 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWAWEFLTECVGIPAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++W + G+ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLDDDEAFRIWNEEIGIPKERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 P-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G EG+R++E+WN+VF QF L + +IDTGMGLER+A V Q+ + Sbjct: 181 GTGPEDVMGGEGDRFMEVWNVVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVCQDVAS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D + L+ + +YE ++ V+ R+I DH++S +F+ +DGI+P+NEGRGYV Sbjct: 241 LFDVDTNRALMDEVGALAHCRYEEDDKKDVSLRIIADHVKSCTFMASDGIMPSNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 RR++RRA + R+LG M L + YPEL + K +I + E+ERF Sbjct: 301 FRRLLRRAARHGRILGIEGNFMTKLAQVVIDLSKDGYPELEEKKDMILRVIDQEEERFAN 360 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +L + + ++L G+ AFKLYDT+G P+D+ ++IL +GL +D F Sbjct: 361 TIDKGLEILADLEKDMEAKGTKVLAGEDAFKLYDTYGFPIDLTKEILDDKGLT-VDEEGF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++A++ QR AR+ + I+ L + + F GYD L + ++ Sbjct: 420 HKAMQVQRETARSARKTTNYMGRDDIYQKL-DASLTSAFTGYDKLEDESKVTALVRLAAD 478 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + EI + G+K V+ +TPFY GGQ+GD G Sbjct: 479 EEG----------------EDEIADAVTDGEKACVITSETPFYGTMGGQVGDRGVIESAN 522 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ D G H + G+ +T ++ L ++ +NR + NHSATHLLH AL Sbjct: 523 GKFEVEDTIHLQGGKIGHIGHMVSGMFQTGETVTLKVNEENRSLIGRNHSATHLLHKALR 582 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 T+LG+HV Q GS +T D LRFD TH ++ E+K +E+ VN I LPVVT +M+ ED Sbjct: 583 TVLGTHVEQAGSLVTRDRLRFDFTHFSAMSQDEIKEVENIVNKEIRAALPVVTDVMSLED 642 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A +GA AL G KY D+VRVV + G S+ LCGGTHV +T EI I+SE+ + A Sbjct: 643 AKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVKNTSEISCFKILSEAGVAA 697 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+T H +++L + A+ K + ++ ++E + EE + L + K K Sbjct: 698 GVRRIEALTSDGLIHHYENVEQELHAAAAAAKSTPADLTTKIESMMEEIKTLHSENEKLK 757 Query: 779 LQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +L E ++ V ++ VD L+++ D L++K+ G++++ + + Sbjct: 758 SKLAKEAMGDVMDQVQEVKGVKVLAVRADGVDMNGLRNLGDQLKEKLGEGVVVIASVL-D 816 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K +++ VT++ + +A +L + A ++GGGG GGRP+MAQ+GG A+A V Sbjct: 817 GKVNLMAAVTDEAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKKPEGVADALAKV 875 Query: 893 ASFLKK 898 A + + Sbjct: 876 AEVVSE 881 >gi|289450565|ref|YP_003475604.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185112|gb|ADC91537.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 886 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 338/907 (37%), Positives = 500/907 (55%), Gaps = 45/907 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH LPS SL+P DP+++ N+GM P K F G E P + VTT Sbjct: 6 LNEIREKYLSFFESKGHLRLPSFSLVPQKDPSILLINAGMTPLKPYFIGTEVPPCKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++ VG T+RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 66 CQKCIRT----PDIERVGYTSRHGTFFEMLGNFSFGDYFKAEAISWAWEFITEVLKLPEE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLYITVY +D+EA+ W + G++ +KI R+ DNFW TGPCGPCSEI FD+G + Sbjct: 122 RLYITVYKDDDEAYDYWHQKIGVAENKIYRLGKEDNFWEHG-TGPCGPCSEIHFDRGPNV 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R++E WNLVF QF++Q + +IDTG GLER A ++Q Sbjct: 181 GCGRPDCHVGCDCDRFVEFWNLVFSQFDRQEDGTYLPMVHKNIDTGGGLERFACIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ A ++ + Y ++ V RVI DH+RS++ +I+DG+LP+NEGRGY Sbjct: 241 NLFEVDTVRRILDAVCKIAKVHYGNDHMADVAIRVITDHIRSTTMMISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA Y RLLG + LLP + E AYPEL + + I + +E++RF Sbjct: 301 VLRRLLRRAARYGRLLGIDGLFLHDLLPVVVQESCGAYPELKEREDYILRVIETEEKRFD 360 Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+ +G LLDG + + L+GDV FKL+DT+G PLD+ ++I +G +D Sbjct: 361 KTVKQGSQLLDGYINEAKKAGSGELSGDVVFKLHDTYGFPLDLTREIAAEQG-ISVDEAG 419 Query: 418 FNQALEEQRSRARAHSL-GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++ Q+ ARA GS + E TQF+GY + Sbjct: 420 FKKNMQRQKDEARAALKAKGGSAWAAGCLPAEVEHKNPTQFVGYSEFSAKGKLLYIISSD 479 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 PI ++ A V ++ D+TPFYA GGQ+GD G G Sbjct: 480 EAGEPI------------------LLPMAGVDADVILITDRTPFYATGGGQVGDIGTITG 521 Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++++ D K AEGIF+HH V G L M L L ++ R + NHSATHLLH Sbjct: 522 EHGLKVEVKDTTKTAEGIFLHHCHVIAGSLEPGMELDLAVNRPVRMDIMRNHSATHLLHK 581 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL T+LG+HV+Q GS + + LRFD H KP T+ EL+ IE VN I N VT +M Sbjct: 582 ALRTVLGTHVTQAGSLVNAEHLRFDFHHMKPCTAEELRQIEAEVNRAILANYQSVTEVMP 641 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A GA AL KY D VRVVS+ G +S CGGTH+S T ++ + +IVSE S Sbjct: 642 MAEAKKKGAMALFDEKYGDMVRVVSM-----GDYSVEFCGGTHLSETSQVGIFHIVSEGS 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +GIRRIEAITG A L + A LK+ ++ R+ ++ + + Sbjct: 697 VASGIRRIEAITGSAALRWLQDLQKTTAEAADMLKIKVADLPERIAQLQNDLKAETKKFQ 756 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L + A +N+++ +S +L+++ ++L+ ++ ++L G Sbjct: 757 ALQSELAKAQAAELKNKAREAAGINYLAAAVSVDGVDDLRAMAESLRSQLAPAAVVL-GA 815 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K + + + + + + + A +L + +A + GGGG GGRP MAQ+GG + K +A+ Sbjct: 816 EINGKLNFVAMASPEAVKKGVKAGNLVKAAASISGGGG-GGRPDMAQAGGKDVAKLPEAL 874 Query: 890 AGVASFL 896 A + Sbjct: 875 AAAEQEI 881 >gi|289423561|ref|ZP_06425362.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L] gi|289156063|gb|EFD04727.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L] Length = 878 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 338/908 (37%), Positives = 522/908 (57%), Gaps = 49/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR F EFF+ GH + S SL+P ND +L+ NSGM P KN F+G E P + + Sbjct: 4 MGLNEIRKNFTEFFRSKGHYIAKSHSLVPSNDKSLLLINSGMAPLKNYFSGVETPPKERM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +TVQKC+R G D++NVG T RH TFFEM+GNFSFG YFK+ AI AW+ +T+ L Sbjct: 64 STVQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKDAITWAWEFITQWLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + ++++TVY+ D+EA+ LWK + G ++I+R+ +DNFW + GPCGPCSEI+FD+GE Sbjct: 120 EEKIWVTVYESDDEAYDLWKNMIGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGE 178 Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + +R++E WNLVF QF++Q L +IDTGMGLERMA V+Q+ Sbjct: 179 KYGCGCEDCKPGCDCDRFLEFWNLVFTQFDRQEDGSYGDLENKNIDTGMGLERMACVMQD 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D + ++Q ++ G Y + N + R+I DH+RS SF++ADGILP+NEGR Sbjct: 239 VDTIFEVDTIQEVLQNVCKIAGKTYGNDPKNDKSIRIITDHIRSVSFMVADGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG + L+ + G AYPEL++ + I++ + E+E+ Sbjct: 299 GYVLRRLLRRAARHGKLLGIEGGFLNDLVDVVIKTSGEAYPELVEKEAYIKKVIGIEEEK 358 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F + L +GL +L ++G++AFKLYDT+G PLD+ +IL G+ +D Sbjct: 359 FAEALHQGLEILKSYTEETKDAGKTHISGEMAFKLYDTYGFPLDLTMEILEDEGMT-VDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++ Q+ RARA ++ + E +++F GY L+ Sbjct: 418 EGFEAEMQAQKDRARAARGNREGDAWKEDPLTRLED-ASSEFDGYKNLKMD--------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S VKAIV E+V+ G + E++ D T FY GGQ+GD G Sbjct: 468 --------------SKVKAIVADNELVDSIEEGCEAELILDTTTFYPNGGGQVGDKGTIE 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ D K A H + G L+ + +++ + R + NHSATHLLH Sbjct: 514 SDIGVFEVVDTIKGANSSIKHIGRLVSGSLKLGDLVATSVNKELRMDAARNHSATHLLHK 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL T+LG HV+Q GS + PD LRFD TH + IT +L IE+ VND + +++P+ +MN Sbjct: 574 ALKTVLGEHVNQAGSLVAPDRLRFDFTHFESITKDQLLEIEEMVNDFVLESMPITAEVMN 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A GA AL G KY + VRVV++ G S LCGGTH+ +T ++ L IVSES Sbjct: 634 INAAKEMGATALFGEKYGENVRVVTM-----GDCSIELCGGTHLDNTAQVGLFKIVSESG 688 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEAITG+ + D + S+ LK + N+ R + I EE + L+ Sbjct: 689 VAAGVRRIEAITGRSVYQSIKDTDRLVASVVDILKTREDNLFERAKTIVEENKALEKELQ 748 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K ++++E+ S +I VN +++ +D L+ D L+ K++SG+++L + Sbjct: 749 AIKAKMSMENADSVLDSKIEIKGVNLITNRYEGMDMDTLRQAADQLRDKLESGVVVLANV 808 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K +++ +++ +D+ +A ++ R AK+ GG G GGRP+MAQ+G + +K D+A+ Sbjct: 809 T-DGKINIVATASKEAIDKGAHAGNIVREVAKIAGGKG-GGRPNMAQAGASDISKLDEAL 866 Query: 890 AGVASFLK 897 + ++ Sbjct: 867 SAAKEIVE 874 >gi|190571072|ref|YP_001975430.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019592|ref|ZP_03335398.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357344|emb|CAQ54775.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995014|gb|EEB55656.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 860 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 400/902 (44%), Positives = 559/902 (61%), Gaps = 54/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR F++FF N HE +PSS LIP +DPTLMFTN+GMV FKNIFTG +K + Sbjct: 1 MKLNEIRERFIKFFVNNNHEQVPSSPLIPEHDPTLMFTNAGMVQFKNIFTGTQKTEMKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+ AW +T+E LD Sbjct: 61 VSSQKCLRAGGKHNDLENVGYTSRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL ITVY D+EA+++W+KISG S DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSDDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHG- 179 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + E +R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q Sbjct: 180 ------NSALHEDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERIAAVMQNVH 233 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF L+ S++ G N V H++I DHLR+++FLIA+G+LP NEGR YVL Sbjct: 234 DNYDIDLFSALVSKSQEYCGNT---ENKVAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCT-----EMGSAYPELIQAKLLIEETLRSEDE 356 RR++RRA Y LLGY + L+ + PAL MG AYPELI+AK LIE TL+SE+E Sbjct: 291 RRLIRRAARYIHLLGYNDSLLNLVFPALIDGTSLAYMGDAYPELIRAKSLIETTLKSEEE 350 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F TL +G+ LLD + L + L+G+ AFKLYDT+G PLDI DIL R D Sbjct: 351 NFKDTLMKGINLLDKFTADLKSGDTLSGESAFKLYDTYGFPLDITLDILKER-KINFDQK 409 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A++EQ+ RARA+ G G + E++WF+L +++G T+F+GY+ Sbjct: 410 GFDNAMKEQKERARANWTGSGEKSVEQVWFNLIDQFGKTEFVGYERDEVKD--------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V AI+ + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I Sbjct: 461 -------------ATVLAIISSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGNFI 507 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + K +++H IVE G +R ++ +I+ + R+ L NHSATHLLH Sbjct: 508 KSDGSTLTVENTNKINDLYLHRCIVESGSVRKGDTVTASINKKRRQDLRRNHSATHLLHF 567 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG HV+Q GS + P+ LRFD +H+KP+T +L S+ED VN +I +NL T++ Sbjct: 568 ALRKILGDHVTQKGSLVAPNRLRFDFSHNKPVTQDQLSSVEDIVNSLIRENLSTSTKVQG 627 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++AI GA AL G KY D VRVV + S LCGGTHV TGEI L I +E S Sbjct: 628 MDEAIDEGAMALFGEKYGDNVRVVKIGD------SKELCGGTHVERTGEIGLFKIAAECS 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + + +RRIEA+TGQ A +++ + LK +A +K ++ R+ + +E ++ ++ Sbjct: 682 VASRVRRIEALTGQEAINYVRNNEISLKKVAECVKAPVNEIISRLSILSQERKEFEVKIK 741 Query: 776 KR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++VE + +I +NF+SH + V ++ LQ++ +I + I K+ Sbjct: 742 NLYKKLISVETVKSTEINGINFVSHTFNNVPGSIIREFA--LQQQKPKTVIAFMVIEKD- 798 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K +++ V++DL ++ NA +L + GG +AQ G + NK D AI + S Sbjct: 799 KTVLIVKVSKDLTNKINAKELVSTLTRRDC----GGNAELAQ-TGCDNNKIDDAITAIHS 853 Query: 895 FL 896 + Sbjct: 854 KI 855 >gi|82751218|ref|YP_416959.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122] gi|123547858|sp|Q2YT60|SYA_STAAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|82656749|emb|CAI81178.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122] Length = 876 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 336/914 (36%), Positives = 506/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P Sbjct: 1 MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK A+ F+GYD Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ GE V + +G+ V + +TPFYA +GGQ+ Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + +++V K G +H V+ G + ++ ++ +RR + NHSA Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGAVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I + + V Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M+ A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L EK ++ S +KV + V+ ++ ++ +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVIDKLTQLQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I + + ++K ++S MD + K+Q Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L + A DL + A ++ G GGGRP MAQ GG Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVS-GKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 ++++ + ++K Sbjct: 861 NISKSLSFIKDYIK 874 >gi|297198338|ref|ZP_06915735.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083] gi|197714390|gb|EDY58424.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083] Length = 890 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 334/923 (36%), Positives = 509/923 (55%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ RL+ITVY +D+EA ++W ++ G+ ++I R+ DN+WSM GPCGPCSEI Sbjct: 116 GYGLEADRLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ N + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKDNFEILGELPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I+ + ++TG+ Y + + RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P+++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVLDLVDTVIAMMGQQYPELVTDRERIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F KTL G +LD + + ++L GD AF L+DT G P+D+ ++ Sbjct: 355 KVAVAEENAFLKTLKAGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + G +G + ++ ++ G T+F+GY Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQGKKTGHAGAGAYRAIADQAGETEFLGYSDTES 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + I+ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + G ++I D QK G++VH +V+ G + ID + R ++ Sbjct: 511 GQIGDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQFGEVTVGAKAHAAIDNRRRTAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + + K + + ++ + DV ++ + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGIAVVTGQVPDGTTPDDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ G ++ L ++ K +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGGRAAVVALFTVNNGKPLTVIATNEPARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N +A+ V + + Sbjct: 865 QGGGQNPAAIGEAVDAVERTVGE 887 >gi|315282412|ref|ZP_07870831.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120] gi|313613946|gb|EFR87671.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120] Length = 864 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 344/901 (38%), Positives = 508/901 (56%), Gaps = 56/901 (6%) Query: 14 FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGK 73 FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P + QK +R Sbjct: 1 FFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRT--- 57 Query: 74 HNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYD 131 ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D +LY+TVY Sbjct: 58 -NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGFDPDKLYVTVYP 116 Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP--- 188 EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF+D+G Sbjct: 117 EDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIFYDRGPSFGDDASDPE 173 Query: 189 -GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 E ERY+EIWNLVF QF LPK +IDTGMGLERM +++Q+ N++ D Sbjct: 174 LYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQDAPTNFETD 233 Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 LF +I+ EQ+ G+KY + N V +VI DH+R+ +F I DG LP+NEGRGY+LRR++ Sbjct: 234 LFMPIIREVEQIAGVKYGQKQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILRRLL 293 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA+ YA++L EP M L+P + M S YPE+ I++ +R+E+ERF +TL+ G Sbjct: 294 RRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFHETLNEG 353 Query: 366 LVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L+ +L + ++++ G FKLYDT G P+++ ++ GL +D F ++ Sbjct: 354 LAILETILKNAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VDHAGFEAEMK 412 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR RAR+ + S + L ++F+GY+ Sbjct: 413 EQRDRARSARADVKSMQVQGEL--LANLTEKSEFVGYNTTEHV----------------- 453 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + ++Q +V+E +G++ +V+F +TPFYAE+GGQ+ D G + + Sbjct: 454 ------SEILYLIQNDTLVDEVAAGEEAQVIFKETPFYAESGGQVADKGTIESETGLAYV 507 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DVQK +H V+ G+L+T ++ L +D RR+ NH+ATHLLH AL LG Sbjct: 508 EDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTLGE 567 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + VV M +A G Sbjct: 568 HVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKELG 627 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVV V G +S LCGG HV +T +I L IVSE+ I AG RRI Sbjct: 628 AMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRI 682 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+TG+ A + Q+ LK A+ LK + +VE++ + R+++ + +L Sbjct: 683 EAVTGKEAYRFVTEQENTLKHAANLLKTTTKETPQKVEQLQADLREVKRENESLLSKLAS 742 Query: 784 EDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + +I V ++ ++ D +L+ +D + K G+++L + + K ++ Sbjct: 743 AASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLVLGAVQGD-KVNL 801 Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + V+ED + ++A L + A GG GGGRP MAQ+GG N + A+ V++++K Sbjct: 802 ISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELGTALDYVSTWVK 860 Query: 898 K 898 + Sbjct: 861 E 861 >gi|329767041|ref|ZP_08258569.1| alanyl-tRNA synthetase [Gemella haemolysans M341] gi|328837766|gb|EGF87391.1| alanyl-tRNA synthetase [Gemella haemolysans M341] Length = 873 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 333/913 (36%), Positives = 514/913 (56%), Gaps = 57/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF + GH++ PS+SL+P +DPTL++ NSG+ K F G+E P Sbjct: 1 MKQLTSTQIRRMYLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGREIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK A+ AW+ LT K Sbjct: 61 PRITNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L++ +L +T++ ED EA+ LW + GL D+IIRI NFW + E GP GP +EIF Sbjct: 117 WLGLEKEKLSVTIHPEDTEAYDLWHNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WN+VF Q+ LP +IDTGMGLER Sbjct: 174 YDRGEDADTWSPKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + +VLQ+ N+D DLF +I+ E+++G KY V +VI DH+R+ +F IADG Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVNAEQDVAFKVIADHIRTVAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++LG + M L + M YP + ++ +++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLGLNKSFMYKLTDVVAEIMEDYYPNVKESANFVKDV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E++RF +TL+ G +L+ + + ++++G AFKLYDT G P+++ ++ G Sbjct: 354 ILKEEDRFHETLNEGEAILNNIAKEVKDTTKVISGKDAFKLYDTFGFPIELTEEYAEELG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +DI FN+ +E+Q+ RAR+ S + ++ G ++F GY L Sbjct: 414 LT-VDIDGFNEEMEKQKERARSSRQEDSSMQVQSDLYN--RIVGDSEFTGYTKLTD---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + AIV + ++E + V+VVFD+TPFYAE+GGQ+ Sbjct: 467 -------------------EGKLLAIVDKDDNLLENYKGEENVKVVFDKTPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + +G + ++ DV+K + +H V G L L +D R + NH+ Sbjct: 508 ADRGLVLAEGFKAEVIDVKKLPDKRHIHLVKVLEGELVVGKEYKLEVDRAYRLNIEKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL+ AL +GSH+ Q GS +T + LRFD+TH P+T E++ +E VN I L Sbjct: 568 ATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALE 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T M +A GA AL G KY D VRVVS+ G +S LCGGTH +++ E+ + Sbjct: 628 IKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSAEVGIF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES + AG+RRIEA+TG+ A +L Q+E L+S+ K + NVV +V + E + Sbjct: 683 KIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANVSNVVEKVSGLQSEIK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 KL + ++ +L + ++ VN ++ ++ + LK ++D + K+++ Sbjct: 743 KLAKEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKLENY 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I + E K + ++ V + + D++NA L + A V G GGGRP MAQ+G N + Sbjct: 803 VIAFASV-NEDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKNKD 860 Query: 884 KADQAIAGVASFL 896 D+A + + + Sbjct: 861 NIDKAFEELLANI 873 >gi|239932415|ref|ZP_04689368.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] gi|291440781|ref|ZP_06580171.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] gi|291343676|gb|EFE70632.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] Length = 889 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 341/921 (37%), Positives = 505/921 (54%), Gaps = 63/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSAQDKG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY +D+EA ++W ++ G+ ++I R+ DNFW M GPCGPCSEI Sbjct: 116 GYGLDPERLWITVYQDDDEAEQIWHEVVGVPKERIQRLGKKDNFWDMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFIL----PKMSIDTGMGLE 231 +D+G G G + ERY+EIWNLVFMQ+E+ + + + + P +IDTG+GLE Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGPGKDYPILGDLPSKNIDTGLGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289 R+A +LQ N Y+ID +I + ++TG++Y V+ RV+ DH+R+S LI DG Sbjct: 235 RLAMILQGVQNMYEIDTSMAVIDKATELTGVRYGDAQASDVSLRVVTDHMRTSVMLIGDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + IE+ Sbjct: 295 VTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELITDRERIEK 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E+ F KTL G +LD +S +L GD AF L+DT G P+D+ ++ Sbjct: 355 VALAEENAFLKTLKAGTNILDTAVSDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAAE 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466 +GL+ +D F + ++EQR RA+A + +G + + + ++ GAT FIGY G Sbjct: 415 QGLS-VDEEGFRRLMKEQRERAKADARAKKTGHADLGAYREIADRAGATDFIGYTHTEG- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V I+ G A G +VE+V D+TPFYAE GG Sbjct: 473 ----------------------ESTVVGILVDGVPSAAATEGDEVEIVLDRTPFYAEGGG 510 Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+GDTG G +++ D QK G++VH +V+ G + + +ID + R ++ Sbjct: 511 QIGDTGRIRTDSGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVDAKAHASIDARRRTAIAR 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HSATHL H AL LG +Q GS P RFD + + +E +N+++A+ Sbjct: 571 AHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPQTVMLDVEQKINEVLAR 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ Sbjct: 631 DLDVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQL 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ ++ ESSI +G+RRIEA+ G A L + + L LK + +V + Sbjct: 686 GLVKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVNQLTELLKGRSEELPEKVSAMLG 745 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQKK 819 + + K + + ++ + DV ++ + + +L+ ++ ++ + Sbjct: 746 RLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVAVVTGQVPDGTTADDLRKLVLDVRGR 805 Query: 820 IQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 IQ G ++ L K +I E +R A DL R +AK LGGGG GG+P +A Sbjct: 806 IQGGRAAVVALFTTVN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 863 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG N +A+ V + Sbjct: 864 QGGGQNPAAIGEAVDAVERLV 884 >gi|56750673|ref|YP_171374.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301] gi|56685632|dbj|BAD78854.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301] Length = 892 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 344/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ T Sbjct: 23 SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 81 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + Sbjct: 82 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 137 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 138 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 197 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ N Sbjct: 198 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 256 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQA + Y + + +VI DHLR+ + LIADG+ +N GRGY Sbjct: 257 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 316 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G P + M + YP L + + I+ L E++RF Sbjct: 317 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 376 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG L + + G+ AF LYDT+G PL++ Q+I +GL +D+ F Sbjct: 377 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 433 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR R++A + T + L E+ ++F+GY Sbjct: 434 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPSEFVGY------------------- 473 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 474 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 529 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV +K G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 530 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 588 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 589 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 648 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V S LCGGTHV++T EI L I+SE+ + +G Sbjct: 649 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 703 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G +L +D ++ L+ K + RV + EE + Q K Sbjct: 704 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 763 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833 +L + + D + ++ VD+ L++ + LQ+K+ G ++L +E Sbjct: 764 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 823 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K +++ ++ + A AK+ GGGG GGRP++AQ+GG + +K +AIA Sbjct: 824 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 882 Query: 893 ASFLK 897 LK Sbjct: 883 LDQLK 887 >gi|262277414|ref|ZP_06055207.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114] gi|262224517|gb|EEY74976.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114] Length = 892 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 401/916 (43%), Positives = 581/916 (63%), Gaps = 47/916 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + R TF FF+KN H+++ SSSLIP NDPTLMF+NSGMV FKN+FTG EK Y Sbjct: 3 KTLRDTRETFKNFFKKNDHKVISSSSLIPQNDPTLMFSNSGMVQFKNVFTGVEKRDYNRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+L+TK+F L Sbjct: 63 TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIAYAWELITKDFALP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L +TV+ ED+EA+ LWKKI+G S DKII+I T+DNFWSM ETGPCGPCSEIF+D GE Sbjct: 123 KNKLCVTVFSEDQEAYDLWKKIAGFSEDKIIKIPTSDNFWSMGETGPCGPCSEIFYDHGE 182 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS E+G+R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLERMA VLQ Sbjct: 183 HLFGGPPGSKDEDGDRFIEIWNLVFMQYEQISKDKRVNLPKPSVDTGMGLERMAAVLQGT 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY IDLF+ L+ S +T + + I +HRVI DHLR+S FLIADG++P+NEGRGYV Sbjct: 243 HDNYQIDLFQKLVDLSADITKTRINNDTIPSHRVISDHLRASCFLIADGLMPSNEGRGYV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM +A LG + ++ ++ L EM S Y EL +AK LI+ET+ +E+E+F Sbjct: 303 LRRIMRRAMRHANTLGSKDHVLSKMIDHLIKEMSSEYNELDRAKDLIKETITNEEEKFQS 362 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 L G+ ++ + + + L+G+VAFKLYDT+G PLD+ +D + +D FNQ Sbjct: 363 MLSNGMKIIHDEKNKIK-NNTLSGEVAFKLYDTYGFPLDLTEDYFKPLKIK-VDTEKFNQ 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E+++ AR G GS + +KIWF LK+++G+T+F+GY Sbjct: 421 LMEKRKQEARKSWKGSGSDSIDKIWFDLKDRHGSTEFVGY-------------------- 460 Query: 481 PIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + V +IV Q GE + +A K++++ +QT FYAE+GGQ+GD+G + Sbjct: 461 ---SSEKTEAKVNSIVNQDGEEILKAKEKDKIKIITNQTCFYAESGGQVGDSGIIKTETG 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK +F+H V+ G + L I+ + R + NHSATHLLH AL Sbjct: 518 TAEVEDTQKFFGSLFIHIGFVKEGYIEKNQDSYLEINLERRENIKSNHSATHLLHAALRE 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD ++SK I S + K I VN I +N V+TR+M+ E A Sbjct: 578 ELGNHVAQRGSYVGPDRLRFDFSYSKQINSEQQKKINSRVNHFINKNDKVITRLMSPEKA 637 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I GA AL G KY + VRVVS+ + + S LCGGTHV +TG+I I++ESSI +G Sbjct: 638 IKEGAMALFGEKYGEEVRVVSMGKNNDKIFSLELCGGTHVENTGKIGQFSIINESSIASG 697 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLI- 773 +RRIEA+ G +++L ++ + K+ ++ +++++ +Y+ + Sbjct: 698 VRRIEALRGDELKTYLENKNLSKQENLKKNKLKFEEIINQIKKLKGDYKNFSEYQNEKQI 757 Query: 774 ------HAKRKLQLNVEDLSCHKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 K + + ++D + + I + ++ I+ + SK+++ ++D K + Sbjct: 758 NDALNYLNKLRAKNILDDKNKNIITSNSKNGIEIINQILIGLSSKDIRGLVDQGTKTKDN 817 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG--P 880 II ++ + +++K S+ + ++++L +R++A + A+ + LGG GGGGR AQ+GG Sbjct: 818 TIIFIISL-EDQKTSIGVGISQNLTNRYDAANFAKKISIYLGGKGGGGRKDFAQAGGGTS 876 Query: 881 NGNKADQAIAGVASFL 896 KA +A+ ++ + Sbjct: 877 TLEKAKEALNKLSEEI 892 >gi|205371826|sp|Q5N4B5|SYA_SYNP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 876 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 344/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ T Sbjct: 7 SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + Sbjct: 66 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 122 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ N Sbjct: 182 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQA + Y + + +VI DHLR+ + LIADG+ +N GRGY Sbjct: 241 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G P + M + YP L + + I+ L E++RF Sbjct: 301 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG L + + G+ AF LYDT+G PL++ Q+I +GL +D+ F Sbjct: 361 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR R++A + T + L E+ ++F+GY Sbjct: 418 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPSEFVGY------------------- 457 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 458 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV +K G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 514 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V S LCGGTHV++T EI L I+SE+ + +G Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 687 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G +L +D ++ L+ K + RV + EE + Q K Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833 +L + + D + ++ VD+ L++ + LQ+K+ G ++L +E Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K +++ ++ + A AK+ GGGG GGRP++AQ+GG + +K +AIA Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 866 Query: 893 ASFLK 897 LK Sbjct: 867 LDQLK 871 >gi|46447153|ref|YP_008518.1| alanyl-tRNA synthetase [Candidatus Protochlamydia amoebophila UWE25] gi|81626678|sp|Q6MB06|SYA_PARUW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46400794|emb|CAF24243.1| probable alanyl-tRNA synthetase [Candidatus Protochlamydia amoebophila UWE25] Length = 878 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 341/909 (37%), Positives = 509/909 (55%), Gaps = 47/909 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR FLE+F+K+ H+++ SSS++P +DPTL+F N+GM FK++F G+ Y Sbjct: 1 MLTQS-IRRQFLEYFKKHQHQIVSSSSVLPHDDPTLLFNNAGMNQFKDVFLGKSYRDYNR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK +AI+ AW++ T+ F Sbjct: 60 AATSQKCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKTQAIRFAWEVSTQVFGF 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + R++ TV+ ED+E F+LW + + A++I R DNFW+M +TGPCGPCSE+ +D+G Sbjct: 120 EPERIWPTVFREDDETFELWTQY--VPAERITRFGEKDNFWAMGDTGPCGPCSELLYDRG 177 Query: 181 ECIPGG-LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P GER++E WNLVFMQF +Q + LPK SIDTG GLER+ + Sbjct: 178 SDYGNATKPSEDSSGERFLEFWNLVFMQFNRQTSGVQNPLPKPSIDTGAGLERVINLKMG 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297 + ++ D+ + +I E ++G+ Y + + RVI DHLR SF IADG+ P+N R Sbjct: 238 VNSVFETDILRSIIAQIELLSGIAYHPQDQQSAAFRVIADHLRCLSFAIADGVQPSNVDR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLR+++RRA+ Y R L +P + +LP L + MGS YPEL++ + I E L E+E Sbjct: 298 GYVLRKVLRRAVRYGRTLKLEKPFLAEVLPQLVSTMGSDYPELVKGQDRIAEILTIEEEA 357 Query: 358 FGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F +TL RG +L+ V+ +I++GD AFKL DT+GLP++ + I GL +D Sbjct: 358 FIRTLKRGGNILNQVIEKSRASHQIISGDDAFKLKDTYGLPIEEILLIAKDSGLK-VDEP 416 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + Q EE + R+R + E I+ + G T+F G+ Sbjct: 417 RYQQLEEEAKQRSRHVHKTVHQIAGENIFADFVKVRGETKFAGFTQ-------------- 462 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 N + S V + GE VEE SGQ+ V +TPFYAE GGQ+GDTG Sbjct: 463 ---------NSLKSSVVGLFVNGEFVEEMQSGQEGLVFLSETPFYAEMGGQVGDTGTLEN 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + D +G+ H + G L+ + +ID + R++++ NH+ATHLLH A Sbjct: 514 SNSKFSVEDCVVPYKGLIAHKGKLNTGSLKNGEMITASIDKKRRQKIANNHTATHLLHWA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H+ Q GS + P LRFD +H K ++ E + IED VN I +NLPV + Sbjct: 574 LHQILGEHIKQAGSVVDPQRLRFDFSHHKALSLEESRQIEDLVNQKIRENLPVKCYEIKY 633 Query: 657 EDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A G KY VRV+ + +S LCGGTH S+ G I L I+ ES Sbjct: 634 EEAQKKEDIKQFFGEKYGSTVRVIDI------DYSKELCGGTHTSALGNIGLFRILKESG 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AGIRRIEA+TG A ++ L++LA LKV V+ ++E++ EE ++ Sbjct: 688 IAAGIRRIEAVTGAEAELLQRQDEDLLRTLAQQLKVPIHQVLEKLEKLQEENKQFIAELK 747 Query: 776 KRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K + +N ++ + + + + + +EL+ +D + +I S +I+L Sbjct: 748 EIKKKELNVLINGFIKKIEQLGNTSVLILE-TALSVEELRLCVDLISDQIPSAVIILGAA 806 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K +L+ +++DL+ NA ++ ++ ++ G GGG+ H AQ GG +A Sbjct: 807 FPD-KCQILVKISDDLVKQGINANEIIKILMPIVE-GSGGGKQHTAQGGGKKPAMLGEAF 864 Query: 890 AGVASFLKK 898 + +LK+ Sbjct: 865 KQIRIYLKE 873 >gi|239623766|ref|ZP_04666797.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521797|gb|EEQ61663.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 887 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 340/907 (37%), Positives = 511/907 (56%), Gaps = 48/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 74 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVVGLDAD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF +W K G+ A +I + DNFW +GPCGPCSE+++D+GE Sbjct: 130 RLYPSVYLEDDEAFDIWNKEIGIPAGRIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEQY 188 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RYIE+WN VF QF+ L +IDTGMGLER+A V+Q Sbjct: 189 GCGSPDCTVGCECDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ +++ +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 249 SLFTVDTNKALLDRVCELSHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R LG + L + YPEL + +++I + L E+++F Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAELSRTVIELCKDGYPELEEKQVMIFKVLSEEEDKFN 368 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL++L + + K+ L+G AFKLYDT+G PLD+ ++IL +G G+D Sbjct: 369 KTIDQGLMILGEMEEEMQKEGSRTLSGTNAFKLYDTYGFPLDLTKEILEEKGY-GVDEDG 427 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ A++EQ+ +AR + + + T+F+GYD L Sbjct: 428 FDAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSITTEFVGYDKL-------------- 473 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + + E+V+ GQK V+ QTPFY GGQ GD G + + Sbjct: 474 ---------SAVSRITVLTTEDELVQALTDGQKGTVIVGQTPFYGTMGGQQGDVGVIVNE 524 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D G H I+ +G+L+ + S+ L++ +NR + NHSATHLL AL Sbjct: 525 NGEFKVEDTIHLQGGKVGHVGIMTKGMLKVDDSVTLSVCGKNRALICKNHSATHLLQKAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + LRFD TH +T E+K +E VN I +LPVVT IM E Sbjct: 585 RLVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPEEIKKVEALVNKEIQASLPVVTEIMTLE 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV + G S+ LCGGTHV++T I I+SE+ I Sbjct: 645 EAKKTGAMALFGEKYGDSVRVVEM-----GDFSTELCGGTHVANTNNIASFKILSEAGIA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T + + + L A K + ++ ++ + +E + L + K Sbjct: 700 AGVRRIEALTSEGLMKYYEEMEAGLHEAAKAAKTTPAALISKIHALLDEIKSLNSENEKL 759 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + L ++ V ++ +S VD L+S+ D L+ K+ G+++LV + Sbjct: 760 KSRLANDSLGDVMSQVKEVNGVKVLASRVSGVDMNGLRSLGDQLKDKLGDGVVVLVS-EQ 818 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ T+ + + +A +L + A ++GGGG GGRP MAQ+GG N + A+ Sbjct: 819 DGKVNLMATATDAVQKKGAHAGNLIKAIAGLVGGGG-GGRPGMAQAGGKNPAGIEDALKK 877 Query: 892 VASFLKK 898 +++ Sbjct: 878 AVEVVEE 884 >gi|312622432|ref|YP_004024045.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312202899|gb|ADQ46226.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 883 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 347/909 (38%), Positives = 522/909 (57%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 3 MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 63 TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 178 EKGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + +VTG Y + V+ RVI DH+R + F+I DGILP+NEGR Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+L E + ++ + + YPEL+Q I++ L +E+ R Sbjct: 298 GYVLRRLIRRAARHGRMLDKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL +L+ + L K++ +LNG++AFK+YDT+G PLD+ ++I +G+ ID Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +++Q+ RARA L + + I + E T F+GYD L+ Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLKQ---------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I E A V+ D+TPFYAE+GGQ+ D G Sbjct: 466 -------------EAKILKIFLDNEETAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G+ ++ DV+K G +H V +G + S+V +D + R NH+ATHLLH Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLATMKNHTATHLLHS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG H Q+GS +TPD LRFD H +P++ +L IE +N+II Q +PV + + Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEKMINNIIQQAIPVEKIVTD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + + L++ Sbjct: 688 VAAGVRRIEAITGNKVYGFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEI 747 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + +LS + + + D +K + D ++++ S I+L Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKER-DSKAIVLNI 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K +VL+ +++ + + + + + VL GG GGGRP AQ GG + +K D A Sbjct: 807 LEQSSKVTVLMSCSKEAVKKGVDCGKVVKEICSVL-GGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|126698879|ref|YP_001087776.1| alanyl-tRNA synthetase [Clostridium difficile 630] gi|254974827|ref|ZP_05271299.1| alanyl-tRNA synthetase [Clostridium difficile QCD-66c26] gi|255092215|ref|ZP_05321693.1| alanyl-tRNA synthetase [Clostridium difficile CIP 107932] gi|255100300|ref|ZP_05329277.1| alanyl-tRNA synthetase [Clostridium difficile QCD-63q42] gi|255306239|ref|ZP_05350411.1| alanyl-tRNA synthetase [Clostridium difficile ATCC 43255] gi|255313954|ref|ZP_05355537.1| alanyl-tRNA synthetase [Clostridium difficile QCD-76w55] gi|255516634|ref|ZP_05384310.1| alanyl-tRNA synthetase [Clostridium difficile QCD-97b34] gi|255649733|ref|ZP_05396635.1| alanyl-tRNA synthetase [Clostridium difficile QCD-37x79] gi|260682889|ref|YP_003214174.1| alanyl-tRNA synthetase [Clostridium difficile CD196] gi|260686487|ref|YP_003217620.1| alanyl-tRNA synthetase [Clostridium difficile R20291] gi|306519842|ref|ZP_07406189.1| alanyl-tRNA synthetase [Clostridium difficile QCD-32g58] gi|122974138|sp|Q18BE7|SYA_CLOD6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115250316|emb|CAJ68138.1| Alanyl-tRNA synthetase [Clostridium difficile] gi|260209052|emb|CBA62175.1| putative alanyl-tRNA synthetase [Clostridium difficile CD196] gi|260212503|emb|CBE03433.1| putative alanyl-tRNA synthetase [Clostridium difficile R20291] Length = 879 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 331/908 (36%), Positives = 538/908 (59%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR+ FLEFF+ GH + S SL+P ND +L+ NSGM P KN F+G E P + Sbjct: 4 MGLNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R G D++NVG T RH TFFEM+GNFSFG YFK +I+ W+ +T+ ++ Sbjct: 64 CTSQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + ++++TVY+ED++++ +W K ++++R+ +DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 EDKIWVTVYEEDDDSYDIWAKEMNFPEERMVRLGKDDNFWEIG-TGPCGPCSEIYFDRGE 178 Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +RY+E WN VF QF++ + +L +IDTGMGLERM ++Q Sbjct: 179 EYGCDNPDCKPGCDCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K +++A E++TG+KY N ++ R+I DH+R+ +FL++DG+LP+NEGR Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG E + L+ + AYP L++ + I++ + E+E+ Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D+G +L+ + +L+G AFKLYDT+G P+D+ ++IL +D Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGKTVLSGQEAFKLYDTYGFPIDLTKEILEEE-HLSVDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ +E+Q+ RAR + + ++ S E + F GY + G Sbjct: 418 EAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYG---------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++AIV+ E+V+ A G KV +V D T FY E GGQ+GD G Sbjct: 468 -------------EGTIEAIVKDDELVQSAEEGDKVSIVLDNTTFYPEGGGQVGDCGLIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + L++ + +K A H I++ G + + +D + R + NHSATHLLH Sbjct: 515 NENLVLEVLNTKKGANNSIKHIGIIKSGRISNGDKVKTLVDRETRMSAARNHSATHLLHK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I +L + IMN Sbjct: 575 ALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A GA AL G KY D VRVVS+ G +S+ LCGGTH+++T ++ + I+SE Sbjct: 635 IKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEGG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEAITG+ +L +D + + LK + N++ R+ + EE + L Sbjct: 690 VAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKELH 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +++++ + S ++ VN +++ +D L+ D L+ K+ SG+++L + Sbjct: 750 DMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLANV 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + ++ T+D+LD+ ++ ++ R AK+ GG G GGRP+MAQ+G + +K DQA+ Sbjct: 810 V-DDKVNFVVTATKDVLDKGIHSGNIVREVAKIAGGKG-GGRPNMAQAGASDVSKVDQAL 867 Query: 890 AGVASFLK 897 + + +K Sbjct: 868 SYASEVIK 875 >gi|310658795|ref|YP_003936516.1| alanyl-tRNA synthetase [Clostridium sticklandii DSM 519] gi|308825573|emb|CBH21611.1| alanyl-tRNA synthetase [Clostridium sticklandii] Length = 882 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 341/912 (37%), Positives = 529/912 (58%), Gaps = 50/912 (5%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ + IR +L FF+ H S SL+P ND +L+ N+GM P KN F G E P Sbjct: 1 MKNLGVNEIREKYLSFFRSKDHYSRSSFSLVPENDKSLLLINAGMAPMKNYFMGLETPPN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + + T QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ +TK+ Sbjct: 61 KRMATCQKCVRTG----DIENVGKTARHATFFEMLGNFSFGDYFKKEAIAWAWEFVTKDL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177 +L+ L++TVY ED+EAF +W+K + ++I+R+ DNFW + TGPCGPCSEI+ Sbjct: 117 ELNPDDLWVTVYLEDDEAFDIWEKDINVPKERIVRLGKEDNFWEIGTGTGPCGPCSEIYI 176 Query: 178 DQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 D+G+ P + +R++E WNLVF QF + LP +IDTGMGLERMA Sbjct: 177 DRGKEFGCSDPDCKPGCDCDRFLEFWNLVFTQFNKDEDGNYNPLPNPNIDTGMGLERMAC 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q + +DID K + +++G +Y V+ R+I DH R+ +FLI+DG+LP+ Sbjct: 237 IMQGVDSIFDIDTMKSIRDNVCELSGKEYGKSTETDVSIRLITDHSRAVTFLISDGVLPS 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA + RLLG ++ L+ + G AYP+L++ K I++ L Sbjct: 297 NEGRGYVLRRLIRRAARHGRLLGIKNNFLVKLMETVIENYGEAYPDLVEKKEYIKKILTV 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F +TLD+G+V+L + + ++L+G+ AF+LYDT+G P+++ +I+ GL Sbjct: 357 EEEKFSETLDQGMVILKEYMDKIKSESKDVLSGEDAFRLYDTYGFPIELTLEIVEEYGLK 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +++Q+ RAR+ G ++ +L +FIGY+ L Sbjct: 417 -VDEDGFKAEMQKQKERARSARTDKGVEGWKETADTLTFSIEKNEFIGYNELE------- 468 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+ +K I+ + ++ GQ E+VF++TPFYAE+GGQ+ D Sbjct: 469 ----------------ASAQIKDIIFDNQKIDILSEGQAGELVFEKTPFYAESGGQVADK 512 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ DVQK G+F+H V G + L +D + R+ NH+ TH Sbjct: 513 GIVKSENFVAEVKDVQKSHNGLFIHRVEVVSGEAKLSDKCELVVDEKLRKSTQRNHTCTH 572 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+H+ Q GS ++ LRFD TH +PITS +L IE+ VN+ I + PV Sbjct: 573 LLHKALRQVLGAHIHQAGSLVSDTRLRFDFTHFEPITSEQLSQIENMVNEAIFKAYPVKV 632 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +MN E+A SGA AL KY D VRVVSV G S+ LCGGTHVS++ +I + I+ Sbjct: 633 EVMNIEEAKKSGAMALFDEKYEDNVRVVSV-----GEFSTELCGGTHVSNSSDIGMFKIL 687 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRIEAITG +L+ ++ L + S +K ++ N+V ++ + E+Y+ Q Sbjct: 688 SESGIASGVRRIEAITGSNVYQYLLEKEAVLDEIKSLVKSNEDNLVIKLSQTIEDYKTAQ 747 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +K K ++ ++ I + ++ ++D + L++V + + KI++ +++ Sbjct: 748 KELSKLKSEIAKNQINEILEGAKDIDGIKYVYSSFEDLDDETLRNVAENVIDKIENSVVL 807 Query: 827 LVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L E K S + +V++ L +A + + + GGGG GG+P+MAQ+GG + +K Sbjct: 808 L-SSYFENKISFVCMVSKGALQKGVHAGKFIKEVSSLTGGGG-GGKPNMAQAGGKDISKL 865 Query: 886 DQAIAGVASFLK 897 +A+ + LK Sbjct: 866 GEAMKQSETILK 877 >gi|170078279|ref|YP_001734917.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002] gi|205830236|sp|B1XP68|SYA_SYNP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169885948|gb|ACA99661.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002] Length = 877 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 339/906 (37%), Positives = 506/906 (55%), Gaps = 50/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FLEFF + H +LPS+SL+P DPT++ T +GM+PFK IF GQ+ T Sbjct: 9 SGSEIRSKFLEFFNQRQHPILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQDAPSPRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F LD Sbjct: 68 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFQLDP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + + ++V+ ED+EAF++W+ G++ +IIR+ DNFW TGPCGPCSE+++D Sbjct: 124 KNIVVSVFREDDEAFEIWRDKVGVNPKRIIRMGEEDNFWKSGPTGPCGPCSELYYDFKPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GDDNIDLEDDTRFIEYYNLVFMQYNRDAEGHLTPLQNKNIDTGMGLERMAQILQQVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + G+ YE + + +VI DH+RS +IADGI +N RGY Sbjct: 243 NYETDLIFPIIETAAKAAGIHYEKADEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + +AYP + + I++ L E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGIDGNFINQVAETAIQLSEAAYPNTRERESFIKQELEREENNFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RG LL +++ +++ ++G AF L+DT G P ++ Q+I GL +D + Sbjct: 363 KTLERGEKLLADIIAK--EEKQISGVDAFTLFDTFGFPFELTQEIAEENGLT-VDAEGYQ 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +++Q+ R++A + T + L E T F+GY L+ Sbjct: 420 AEMKKQQERSKAAHETIDL-TVQGSLDELAEHIHPTAFLGYTDLQSQV------------ 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++A++ G VE A +G V+++ +QTPFYAE+GGQ+GD G GD + Sbjct: 467 -----------KIEAVLVDGHRVETAEAGVVVQLICNQTPFYAESGGQIGDRGYFSGDQL 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV +K G FVHH VERG L ++ TID RR+ NH+ATHLL AL Sbjct: 516 VVRINDV-QKESGFFVHHGKVERGSLTVGDTVNATIDRACRRRAQANHTATHLLQAALKN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+AEL IE +N IA+ +M +A Sbjct: 575 IVDDSISQAGSLVDFDRLRFDFNCPRALTAAELTQIEAQINTWIAEAHEGQVAVMPIAEA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY + VRVV S LCGGTHV +T EI L I+SE+ I +G Sbjct: 635 KAKGAVAMFGEKYGEEVRVVDFPG-----VSMELCGGTHVKNTAEIGLFKIISETGISSG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L +D+ +K L K + RVE I E R Q K K Sbjct: 690 IRRIEAVAGPAVLEYLKVRDQVVKDLGDKFKAKPEEITERVENIQAELRNTQKELEKVKA 749 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + + + + + ++D+K L++ + LQ+K+ ++L ++ Sbjct: 750 ELAIAKSEALVSQAETVGEFQILVENMGDLDAKALQTAAERLQQKLGEAAVVLGSTPEDG 809 Query: 835 KASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ +E + + A AK+ GGGG GGRP++AQ+GG + +K +A+ Sbjct: 810 KVSLVAAFSEGIYKGKKVQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDASKLPEALHTA 868 Query: 893 ASFLKK 898 L++ Sbjct: 869 KQQLRE 874 >gi|242373918|ref|ZP_04819492.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] gi|242348472|gb|EES40074.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] Length = 876 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 338/914 (36%), Positives = 506/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED A+K+W + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQNDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I E ++G KY + V +VI DH+R+ +F IADG Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENISGKKYLEVDEQDVAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ + + + G+ AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLEEGLAILNQFIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK + F+GY+ Sbjct: 414 LT-VDMATFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S + ++ GE VE +G+ V + +TPFYA +GGQ+ Sbjct: 467 -------------------QSTITHLIYNGEEVESVEAGETVYFILKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + + +T+V K G +H V+ G + +++ RR + NHSA Sbjct: 508 DEGTVGNENFEIAVTEVTKAPNGQNLHKGTVQFGQATVGAEVDASVNKDERRAIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + D LRFD +H P++ E+ +E VN+ I + + V Sbjct: 568 THLLHQALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMSQEEIDQVERRVNEEIWRGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M ++A + GA AL G KY D VRVV++ S LCGG HV++T EI L Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L K ++ + +KV + VVG++ ++ EE + Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNNVKVKSDDQVVGKITQLQEEEK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + I D+ ++ + ++K ++S MD + K+Q Sbjct: 743 NLLKQLEQRNKEITSLKMGNIEDQVETINDLKVLATEVDVPNAKAIRSTMDDFKSKLQDA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + K S++ V + L D+ A DL + A V+ GG GGGRP MAQ GG Sbjct: 803 IIVLAS-NVNGKVSIIATVPKSLTDQVKAGDLIKHMAPVV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 K +A+ + ++K Sbjct: 861 KITEALRFIKDYIK 874 >gi|116493011|ref|YP_804746.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] gi|122265525|sp|Q03ER8|SYA_PEDPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116103161|gb|ABJ68304.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] Length = 881 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 315/915 (34%), Positives = 492/915 (53%), Gaps = 60/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IR +L+FF+ GH + PS+SL+P +DPTL++ NSG+ K F G P + Sbjct: 4 KSSSEIRRMYLDFFKSKGHIIEPSASLVPQDDPTLLWINSGVATMKKYFDGSVVPEVPRL 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QK +R ND++NVG T RHHT FEMLGNFS G YFKE AI AW+LLT + + Sbjct: 64 TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWYG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +D +LY+TVY +DEEA K+W + + + I+++ DNFW + E GP GP SEIF+D+ Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TPIDPSHIVKV--EDNFWDIGE-GPSGPDSEIFYDR 175 Query: 180 GECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 GE E R++EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 176 GEAFNNLEDDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 +V Q+ N++ DLF +I E+++G KY + ++ +VI DH R+ +F I DG +P Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGENKESDISFKVIADHARAITFAIGDGAIP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYV+RR++RRA+ + + LG E + ++P + M YPE++ + I + ++ Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKQLGVNETFLYKMVPVVGEIMKDYYPEVLADQDYIAKVIK 355 Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF +TL GL LL+ ++ + ++G AF+L+DT+G PL++ ++ +GL Sbjct: 356 SEEDRFSETLTDGLELLNTIIDETKTKGSDTISGFDAFRLFDTYGFPLELAKEYASDKGL 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F +++Q+ RAR+ S + L + ++++GYD LR Sbjct: 416 K-VDEAGFEDEMQKQKERARSARSTEKSMGVQSDL--LTDLKTESKYVGYDTLRVD---- 468 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ++I++ ++Q G++ + G+ V+F+ TPFYAE GGQ+ D Sbjct: 469 ------------------NAILENVIQDGKLTDIVEPGE-ARVLFNITPFYAEMGGQVAD 509 Query: 531 TGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + + + A H I + + + L ++ ++ NH+A Sbjct: 510 QGEIRDANGEIVAEVIDVQHAPNGQNLHTIKALKKMHSGAAYTLEVNRAFHLKVEKNHTA 569 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL ILG H Q GS + P LRFD TH +T+ +L +E +N+ I +PV Sbjct: 570 THLLDQALRDILGDHTQQAGSLVEPGYLRFDFTHFGQVTNEDLDRVEKIINEKIYDEIPV 629 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + E GA AL KY +VRVV + G +S CGGTHV +T EI L Sbjct: 630 TTVETDLETGKKMGAIALFNDKYGKKVRVVGI-----GDYSKEFCGGTHVKNTNEIGLFK 684 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYR 768 IVSES + AG+RRIEA+T Q A L ++ LK A LK +V + E++ + Sbjct: 685 IVSESGVGAGVRRIEAVTSQAALEFLNTEENLLKQTAGLLKSAQLKDVPTKTEQLQSNVK 744 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L ++ + ++ +I V ++ + +L+ + D + K QS Sbjct: 745 ALTQKISQLEAKIAKSQAANIGDEMVEINGVRLIAADVQVSGMDQLRQMADDWKNKDQSD 804 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L E KA+++ V +D + + A DL + A + GG GGGRP+MAQ+GG N Sbjct: 805 VLVLAAKIGE-KANLIAAVKDDFVKKGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSNP 862 Query: 883 NKADQAIAGVASFLK 897 + A+ +L+ Sbjct: 863 DNIKAALQAAREWLE 877 >gi|295111268|emb|CBL28018.1| alanyl-tRNA synthetase [Synergistetes bacterium SGP1] Length = 879 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 337/906 (37%), Positives = 497/906 (54%), Gaps = 47/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +R FL+F+++ G PS SLIP +DP+L+FT +GMVP K + G +P Y + Sbjct: 5 TGRELREMFLKFWEEKGSHRCPSFSLIP-DDPSLLFTIAGMVPLKPYYLGIRQPPYPRIV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI AW+ LT LD Sbjct: 64 TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGSYFKKEAITWAWEFLTDRIGLDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY T+Y +DEE+ ++W + +GL D+I+R ++N+W M +TGPCGPCSEI++D+G Sbjct: 120 NRLYATIYQDDEESREVWHRQAGLPEDRILRFGQDNNYWFMGDTGPCGPCSEIYYDRGPD 179 Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P + +RY+EIWNLVF QF++Q LP +IDTGMGLER+A+V+Q Sbjct: 180 YGCGKPSCGVGCDCDRYLEIWNLVFTQFDRQKDGSLPNLPHKNIDTGMGLERLASVVQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +Y+ DLF LI+ + G++Y N + RVI DH+RS +F++ADG+LPAN+G G Sbjct: 240 DTDYETDLFTPLIRHTCARAGIQYGQGGRNDMAVRVIADHVRSVAFMLADGVLPANDGPG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA+ + RLLG+ + +P L MG Y ELI + IE+ + E+ERF Sbjct: 300 YVLRRLLRRAVRFGRLLGFEGAFLCEYMPILIDLMGDPYRELIDQRPTIEQIITVEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL +G L + + L + G+V F LYDT+G P ++ +++ +G +D Sbjct: 360 QRTLQQGTDLFEAETARLAAAGRREVPGEVVFTLYDTYGFPPELTREMADEQGF-AVDEA 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+++QR RARA S S ++ L+ + GAT+F GY Sbjct: 419 GFKAAMQQQRDRARASSKQKKSALAGDVYTELENEGGATRFTGY---------------- 462 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + + V AI+ + + + E+V D+TPFYAE GG++GDTG Sbjct: 463 -------ASAMGAGKVTAILTKEGRRDHVEGNGEFELVLDETPFYAERGGEVGDTGTIRD 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 L++ + + VH + G +R S+ D R+ + NH+ THLLH A Sbjct: 516 GETTLEVLNTVPHGG-VIVHRVRMTEGSVRVGDSMTAEADDARRQAIRRNHTGTHLLHEA 574 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS +T LRFD TH P+T +++ +E VN I +N+PV T Sbjct: 575 LGRVLGRHVRQAGSLVTDRFLRFDFTHHTPLTDGQIEEVERIVNGEILRNVPVSTAEHTL 634 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A GA AL KY D VRVV+V S LCGG HV +TG+I ++ E SI Sbjct: 635 EEARELGAKALFDEKYGDVVRVVTVP-----DFSMELCGGLHVRATGDIGSFKVLREESI 689 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---I 773 +G RRI A+TG + + L L + + + +++ EE R LQ Sbjct: 690 GSGTRRILAMTGMEVVELMQVLFGLRRRLMGILSADEEGLEAKAKDLAEELRALQKRAQE 749 Query: 774 HAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A+ +L NV+ + ++ +V S L+ V D ++ + +L + + Sbjct: 750 RARHELTDNVDRFVERRRVGGAVLHIGRFPDVKSDVLRDVGDRVKAGPDPSVALLASVDE 809 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 +++++ + + NA + R ++ VL GG GGGRP AQ GG +G K D+A+ Sbjct: 810 NGACTLIVMADDRAVKLGANAGAIVREASAVL-GGKGGGRPSTAQGGGRDGEKLDEALER 868 Query: 892 VASFLK 897 A LK Sbjct: 869 AAEVLK 874 >gi|56963357|ref|YP_175088.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16] gi|59798485|sp|Q5WHM8|SYA_BACSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56909600|dbj|BAD64127.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16] Length = 876 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 352/910 (38%), Positives = 517/910 (56%), Gaps = 56/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +S+R F++FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 5 SSASVRQMFIDFFKEKGHSVEPSASLVPFEDPSLLWINSGVATLKKYFDGRVIPENPRIV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE+AI+ AW+ LT K Sbjct: 65 NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEQAIEWAWEFLTDKKWIGF 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 Q RL +TV+ EDEEA++ W + GL ++IIR+ NFW + E GP GP SEIF+D+G Sbjct: 121 PQERLSVTVHPEDEEAYRYWHQHIGLPEERIIRL--EGNFWDIGE-GPSGPNSEIFYDRG 177 Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E ERY+EIWNLVF QF LPK +IDTGMGLERM +V Sbjct: 178 PEYGDDPNDPELYPGGENERYLEIWNLVFSQFNHNADGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q+ N++ DLF +I+A+E + Y+ + +VI DH+R+ +F + DG LP+NEG Sbjct: 238 IQDTPTNFETDLFMPIIEATEALASTTYKEAD-TAFKVIADHIRTVAFAVGDGALPSNEG 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ +A+ +G P M L+P + M YPE+ + I +R+E+E Sbjct: 297 RGYVLRRLLRRAVRFAKSIGIDRPFMYELVPVVGAIMKDFYPEVADKQDFIARVIRTEEE 356 Query: 357 RFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL+ GL +L ++ + E + G+ AF+LYDT+G P+D+ ++ + GL +D Sbjct: 357 RFHETLNEGLAILSDIIEKAKATNKETIAGEDAFRLYDTYGFPIDLTEEYVHDEGLT-VD 415 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F+Q +E+QR RARA S + ++ F E + F+GY+ Sbjct: 416 RAGFDQEMEQQRQRARAARQESASMSVQEDVFG--EVKTPSVFVGYEHTETD-------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +++ +V+ E VE+AV G ++ D+TPFYAE+GGQ+ D G Sbjct: 466 ---------------AVITTLVRGKEKVEQAVQGDVIQFFLDETPFYAESGGQVADRGMI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D + + DV+K G +H A V G + T I+ + R + NH+ATHLLH Sbjct: 511 VTDTGQAVVKDVKKAPNGQHLHTAEVTIGEISTGQQASARIEVRERLDIVKNHTATHLLH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS ++ + LRFD +H +T EL+ IE+ VN+ + Q LPV I Sbjct: 571 QALKDVLGEHVNQAGSLVSSERLRFDFSHFGQVTPNELQQIEEIVNEKVWQALPVDISIQ 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A A+GA AL G KY VRVV V G +S LCGG HV +T EI L I SES Sbjct: 631 RLEEAKAAGAMALFGEKYGSEVRVVRV-----GDYSLELCGGCHVRNTAEIGLFKITSES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA+T + A L Q LK A LK + +V R+E + EE RK Q Sbjct: 686 GIGAGVRRIEAVTSKGAYQFLSEQTAILKDAAERLKAKRLSDVPQRIESLQEELRKAQRE 745 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +L + +I V ++ + D++ L+S++D L++ + +I+L Sbjct: 746 NESLTAKLGQAEAGNLNDQVKEIGGVAVIAAQVDAKDTEALRSMVDTLKQAHEKAVIVLA 805 Query: 829 GISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K + + VT+ + + F+A L + A GGGG GGRP MAQ+GG + K D+ Sbjct: 806 AKTGN-KLAFVAGVTKPAIAEGFHAGKLIKEVAARTGGGG-GGRPDMAQAGGKDPAKLDE 863 Query: 888 AIAGVASFLK 897 A+A V ++K Sbjct: 864 ALAYVHEYVK 873 >gi|241890033|ref|ZP_04777331.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379] gi|241863655|gb|EER68039.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379] Length = 873 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 331/913 (36%), Positives = 513/913 (56%), Gaps = 57/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF + GH++ PS+SL+P +DP+L++ NSG+ K F G+E P Sbjct: 1 MKQLTSTQIRRMYLDFFVEKGHKIEPSASLVPIDDPSLLWINSGVATLKKYFDGREIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK A+ AW+ LT K Sbjct: 61 PRITNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L++ +L +T++ ED EA+ LWK + GL ++IIRI NFW + E GP GP +EIF Sbjct: 117 WLGLEKEKLSVTIHPEDTEAYDLWKNVIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E +RY+E+WN+VF Q+ LP +IDTGMGLER Sbjct: 174 YDRGEEADTWSPKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYSELPAKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + +VLQ+ N+D DLF +I+ E+++G KY V +VI DH+R+ F IADG Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVSTEQDVAFKVIADHIRTVVFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ +A++LG M L + M YP + ++ +++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRFAKVLGLNNSFMYKLTDVVAEIMVDYYPNVKESASFVKDV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E++RF +TL G +L+ + + + ++++G AFKLYDT G P+++ ++ G Sbjct: 354 ILKEEDRFHETLHEGETILNNIANEVKDTTKVISGKDAFKLYDTFGFPIELTEEYAEELG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +DI FN+ +E+Q+ RAR+ S + +S + G ++F GY L Sbjct: 414 LT-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--KIVGDSEFTGYTSLTD---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQL 528 V AIV + + + E G++V VVF++TPFYAE+GGQ+ Sbjct: 467 -------------------EGKVLAIVDREDNLLENYKGEEVVKVVFERTPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +G + ++ DV+K + +H V G L L ++ R + NH+ Sbjct: 508 ADKGLVTAEGFKAEVVDVKKLPDKRHIHFVKVVEGELVVGKEYKLEVNRPYRLNVEKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL+ AL +GSH+ Q GS +T + LRFD+TH P+T E++ +E VN I L Sbjct: 568 ATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALE 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T M +A GA AL G KY D VRVVS+ G +S LCGGTH ++ E+ + Sbjct: 628 IKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNVNSAEVGIF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES + AG+RRIEA+TG+ A +L Q+E L+S+ K + NVV +V + + + Sbjct: 683 KIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANSSNVVEKVSSLQSDIK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 KL + ++ +L + ++ VN ++ ++ + LK ++D + K+++ Sbjct: 743 KLSKEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKLENY 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I + E K + ++ V + + D++NA L + A V G GGGRP MAQ+G N + Sbjct: 803 VIAFASV-NEDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKNKD 860 Query: 884 KADQAIAGVASFL 896 D+A + + + Sbjct: 861 NIDKAFDELLANI 873 >gi|304385238|ref|ZP_07367583.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284] gi|304328445|gb|EFL95666.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284] Length = 881 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 325/915 (35%), Positives = 499/915 (54%), Gaps = 60/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IR +L+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 4 KSSSEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRL 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QK +R ND++NVG T RHHT FEMLGNFS G YFKE AI AW+LLT + FD Sbjct: 64 TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +D +LY+TVY +DEEA K+W + +G+ I+ DNFW + E GP GP SEIF+D+ Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175 Query: 180 GECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 GE E R++EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 176 GEEFNNLADDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 +V Q+ N++ DLF +I E+++G KY + N+ V +VI DH R+ +F I DG +P Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVPFKVIADHARAITFAIGDGAIP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYV+RR++RRA+ + + L +P + ++P + M YPE++ K IE+ ++ Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIK 355 Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF +TL GL LL+ +++ ++++G AF+L+DT+G PL++ ++ +G+ Sbjct: 356 SEEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGM 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F +++Q+ RAR+ S + L + ++++GYD L+ Sbjct: 416 E-IDEAGFADEMQKQKERARSARSNAKSMGVQSDL--LTDLKTPSEYVGYDTLKVDA--- 469 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +++K I+Q ++ + G+ V+FD TPFYAE GGQ+ D Sbjct: 470 -------------------AVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509 Query: 531 TGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + + A H I + + S L +D ++ NH+A Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGESFTLIVDRAFHLKVEKNHTA 569 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LG H Q GS + P LRFD TH +T +L+ +E+ +ND I +PV Sbjct: 570 THLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIPV 629 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + E GA AL KY +VRVVSV G +S CGGTHV +T EI L Sbjct: 630 TTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLFK 684 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYR 768 IVSES + AG+RRIEA+T Q A L G++ L+ A LK +V +VE++ + + Sbjct: 685 IVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQVK 744 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L + + ++ +++ +I ++ + +L+ + D + K QS Sbjct: 745 DLNQTINQLEAKIAQAEVANIYDQVQEINGFRLITAEVQVSGMDQLRQMADDWKTKDQSD 804 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L E KA+++ V + + A DL + A + GG GGGRP+MAQ+GG Sbjct: 805 VLVLGAKIGE-KANLIAAVKDPFVKEGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSAP 862 Query: 883 NKADQAIAGVASFLK 897 K ++A+ + +L+ Sbjct: 863 EKINEALKAASEWLE 877 >gi|317056551|ref|YP_004105018.1| alanyl-tRNA synthetase [Ruminococcus albus 7] gi|315448820|gb|ADU22384.1| alanyl-tRNA synthetase [Ruminococcus albus 7] Length = 885 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 306/909 (33%), Positives = 468/909 (51%), Gaps = 42/909 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++++ +R ++L+FF+ G S L+P ND +L+ +GM P K FTGQE P + Sbjct: 4 TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T RH T+FEMLGNFSFG YFK+ AI AW+ +T L Sbjct: 64 TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+++VY++D+EA K+W + G+ D I+R+ DNFW GPCGPCSEI+FD+GE Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+E WNLVF QFE+ L + +IDTGMGLER+A ++Q Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +D+D K + ++ G +Y E V+ RVI DH+R+ +FL +DG+LP+NEGR Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGAEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + +LLG + L+ + Y EL + I + L +E++ Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F T+DRG+ +LD + L + L+G+ FKL DT+G PLD+ ++IL +GL+ D Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLSA-DE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + +E+QR AR G E+ F +K +T+F GYD Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYDKTED---------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + ++ + +++E A V +V DQT FYAE+GGQ GDTG Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQTGDTGIVE 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + D QK G F V G L + +D R NHS HLL Sbjct: 516 TATGKADVLDTQKAVGGKFALKVKVTEGALTVGQQVTFKVDKAKRLATMRNHSCAHLLQA 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++LG HV Q G + LRFD +H + +T+ E +E VN I L + M Sbjct: 576 ALRSVLGDHVHQAGQLVDSQRLRFDFSHFEAMTNEEKAKVEALVNKYIFDALDITMEEMP 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A GA AL G KY + VRVV++ + S CGGTH+++T +I L I+SE+S Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMGDKSDAA-SIEFCGGTHLNNTSKIGLFKIISENS 694 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TG L + + + LK + +V R + E + L+ Sbjct: 695 VASGVRRIEAVTGTGVLELLNSNIDTINKASETLKLNNPAELVARCGAVMHEIKGLEKER 754 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + + V+ + ++ + L+ + D L+ + ++++ Sbjct: 755 DSLETSMANMRAKSVLENAVDVNGVSVATAQLTNIKPDVLRKMADELKAANDNVLVIMTT 814 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ EK V E + +A +A A L G GGGRP A +G + A+ Sbjct: 815 VNGEKGNIVAAAGKEAVAKGAHAGKIAGKIAA-LTNGKGGGRPDSAMAGVGDVTLIGAAL 873 Query: 890 AGVASFLKK 898 A + Sbjct: 874 EKAAEVAGE 882 >gi|37521917|ref|NP_925294.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421] gi|44888325|sp|Q7NI36|SYA_GLOVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|35212916|dbj|BAC90289.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421] Length = 871 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 337/909 (37%), Positives = 501/909 (55%), Gaps = 57/909 (6%) Query: 1 MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M V ++IR FL+FF+ H LPS+SL+P +DPT++ T +GM+PFK +F G+ + Sbjct: 1 MPTVLNGNAIREKFLQFFESKQHRRLPSASLVP-DDPTVLLTIAGMLPFKPVFMGKRERP 59 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 VTT QKCVR ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T Sbjct: 60 APRVTTSQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKREAIGWAWELVTGV 115 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F+L RL+++VY+EDEEA LW++++GL ++ ++ + NFW TGPCGPCSEI++ Sbjct: 116 FELPPERLWVSVYEEDEEALVLWQEVAGLPPVRVRKMGADSNFWESGPTGPCGPCSEIYY 175 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 D G ++ R++EI+NLVFMQ + ++ LP+ +IDTG+GLERMA VL Sbjct: 176 DFHPE-RGEGDIDLDDDSRFLEIYNLVFMQLNRDSEGTFSELPRKNIDTGLGLERMAQVL 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPAN 294 Q NNY+ DL +I+ +E ++G Y + + ++I DH R+ L+ADG+LP N Sbjct: 235 QGVPNNYETDLVFPIIRKAEVLSGRDYFKADDQQKTSFKIIGDHTRAVVHLVADGVLPGN 294 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGY+LRR++RR + + R+LG + + MG AYP L++++ LI L +E Sbjct: 295 LGRGYILRRLIRRMVRHGRMLGIAGSFLPQMATVAVELMGGAYPNLLESRELILTRLATE 354 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + +F +TL+ G LLD +L K ++G AF LYDT+G PL++ ++ RGL +D Sbjct: 355 ESQFLQTLETGERLLDEILGRSEKR--ISGVDAFMLYDTYGFPLELTMEVAAERGLE-VD 411 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + ++ +A+E+QR RAR + + T F+GY Sbjct: 412 VAAYEEAMEKQRERARRAAKTVDLTQGAS-----LADLERTDFLGY-------------- 452 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++VK ++ +GE +E A +G V++V DQTPFY E GGQ+GD G Sbjct: 453 ---------RNVASKAMVKLVLFEGEPIERASAGASVQLVLDQTPFYPEGGGQIGDRGYL 503 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + ++I DVQK+ + + +H +ERG + T S+ ID +RR+ +H+ATHLL Sbjct: 504 SGPDLLVRIEDVQKR-DTVILHTGRIERGTVATGDSVQAQIDLADRRRSQAHHTATHLLQ 562 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG V Q GS + D LRFD + K ++ AE++ +ED VN IA+ + +M Sbjct: 563 AALKKVLGESVQQQGSLVAFDRLRFDFSWPKALSQAEIQQVEDLVNTWIAEAHTLSQEVM 622 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A A GA A G KY VRV+ V S LCGGTHV +T EI L +VSE+ Sbjct: 623 PIDQAKARGALAFFGEKYGSEVRVIDVPG-----VSIELCGGTHVRNTAEIGLFKMVSET 677 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I +G+RRIEA+ G +L +D + LA KV + RV + + ++ Q Sbjct: 678 GIASGVRRIEAVAGPAVLEYLRLRDTVTRQLADEFKVQVEQIPQRVAALTSDLKQAQKQI 737 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLV 828 K L + + + + + LKS + L K+ G ++L Sbjct: 738 DSLKAALATARAEALLGQAETTGGFRVLVADLGDTEPEALKSAAEHLLAKLGEGGAVVLG 797 Query: 829 GISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 K S++ + + NA AK+ GGGG GGRP++AQ+GG K Sbjct: 798 SAPAADKVSLVAAFGKGAVAKGLNAGKFVGEVAKITGGGG-GGRPNLAQAGGKQPEKLKN 856 Query: 888 AIAGVASFL 896 A++ +S L Sbjct: 857 ALSEASSKL 865 >gi|255655294|ref|ZP_05400703.1| alanyl-tRNA synthetase [Clostridium difficile QCD-23m63] gi|296451278|ref|ZP_06893018.1| alanine--tRNA ligase [Clostridium difficile NAP08] gi|296880370|ref|ZP_06904333.1| alanine--tRNA ligase [Clostridium difficile NAP07] gi|296259884|gb|EFH06739.1| alanine--tRNA ligase [Clostridium difficile NAP08] gi|296428611|gb|EFH14495.1| alanine--tRNA ligase [Clostridium difficile NAP07] Length = 879 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 330/908 (36%), Positives = 538/908 (59%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR+ FLEFF+ GH + S SL+P ND +L+ NSGM P KN F+G E P + Sbjct: 4 MGLNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R G D++NVG T RH TFFEM+GNFSFG YFK +I+ W+ +T+ ++ Sbjct: 64 CTSQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + ++++TVY+ED++++ +W K ++++++ +DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 EDKIWVTVYEEDDDSYDIWAKEMNFPEERMVKLGKDDNFWEIG-TGPCGPCSEIYFDRGE 178 Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +RY+E WN VF QF++ + +L +IDTGMGLERM ++Q Sbjct: 179 EYGCDNPDCKPGCDCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K +++A E++TG+KY N ++ R+I DH+R+ +FL++DG+LP+NEGR Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG E + L+ + AYP L++ + I++ + E+E+ Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D+G +L+ + +L+G AFKLYDT+G P+D+ ++IL +D Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGKTVLSGQEAFKLYDTYGFPIDLTKEILEEE-HLSVDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ +E+Q+ RAR + + ++ S E + F GY + G Sbjct: 418 EAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYG---------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++AIV+ E+V+ A G KV +V D T FY E GGQ+GD G Sbjct: 468 -------------EGTIEAIVKDDELVQSAKEGDKVSIVLDNTTFYPEGGGQVGDCGLIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + L++ + +K A H I++ G + + +D + R + NHSATHLLH Sbjct: 515 NENLVLEVLNTKKGANNSIKHIGIIKSGSISNGDKVKTLVDRETRMSAARNHSATHLLHK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I +L + IMN Sbjct: 575 ALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A GA AL G KY D VRVVS+ G +S+ LCGGTH+++T ++ + I+SE Sbjct: 635 IKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEGG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEAITG+ +L +D + + LK + N++ R+ + EE + L Sbjct: 690 VAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKELH 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +++++ + S ++ VN +++ +D L+ D L+ K+ SG+++L + Sbjct: 750 DMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLANV 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + ++ T+D+LD+ ++ ++ R AK+ GG G GGRP+MAQ+G + +K DQA+ Sbjct: 810 V-DDKVNFVVTATKDVLDKGIHSGNIVREVAKIAGGKG-GGRPNMAQAGASDVSKVDQAL 867 Query: 890 AGVASFLK 897 + + +K Sbjct: 868 SYASEVIK 875 >gi|27468219|ref|NP_764856.1| alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57867101|ref|YP_188758.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|251811025|ref|ZP_04825498.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|282875956|ref|ZP_06284823.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135] gi|33301694|sp|Q8CSA7|SYA_STAES RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71153555|sp|Q5HNT2|SYA_STAEQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|27315765|gb|AAO04900.1|AE016748_134 alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57637759|gb|AAW54547.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|251805443|gb|EES58100.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|281294981|gb|EFA87508.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135] Length = 876 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 343/911 (37%), Positives = 512/911 (56%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 4 MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K Sbjct: 64 VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 ++ +LY+T++ ED EAF++W + GL +IIRI NFW + E GP GP +EIF+D+ Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176 Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G P E ERY+E+WNLVF +F LP +IDTGMGLERM + Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293 + Q NY+ DLF +I+ E V+G KY ++ V +VI DH+R+ SF IADG LPA Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ ++S Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ L+ Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ +F Q +++QR RAR S + LK +QF+GY+ Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S++ I+ GE V+ +G+ + + +TPFYA +GGQ+ D G Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + +TDV K G +H IV+ G + ++ ++RR + NHSATHL Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I + + V + Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T EI L IVS Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771 ES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ EE + L Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745 Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +R L++ + I ++ ++ + + K ++S MD + K+Q II+ Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LVG + K SV+ V + L ++ A DL + ++ GG GGGRP MAQ GG K Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863 Query: 887 QAIAGVASFLK 897 +A+ + ++K Sbjct: 864 EALRFIKDYIK 874 >gi|158337563|ref|YP_001518738.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017] gi|205829961|sp|B0CFX4|SYA_ACAM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158307804|gb|ABW29421.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017] Length = 873 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 326/903 (36%), Positives = 500/903 (55%), Gaps = 49/903 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR TFL+F+ GH++LPS+SL+P DPT++ T +GM+PFK IF GQ + T Sbjct: 6 SGAQIRQTFLDFYAAKGHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQREAEVPRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI AW+L T+ + L Sbjct: 65 TSQKCIRT----NDIENVGQTARHHTYFEMLGNFSFGDYFKEQAIAWAWELSTEVYKLPP 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+ +V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSE+++D Sbjct: 121 ERIVPSVFEEDDEAFAIWRDKIGIPEHRIQRMGAEDNFWASGPTGPCGPCSELYYDFYPE 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFM++ + + + L +IDTG+GLERMA +LQ N Sbjct: 181 -KGDDKIDLEDDTRFIEYYNLVFMEYNRDSDGKLAPLKNKNIDTGLGLERMAQILQGVPN 239 Query: 243 NYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ G+ K + + +V+ DH+RS +IADGI +N GRGY Sbjct: 240 NYETDLIFPIIETAAKIAGIKYKKSKAKTKTSLKVVGDHVRSVVQMIADGITASNVGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + +L+G + + + AYPE+ + + +I+ L E+ +F Sbjct: 300 VLRRLIRRVVRHGQLIGIDGAFITQVAETAIASLEVAYPEVREREKIIKTELEREEAQFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RG LL +++ K ++G AF LYDT+G PL++ Q+I +GL +D F Sbjct: 360 KTLNRGEKLLGEIMAKKPKQ--ISGKDAFDLYDTYGFPLELTQEIAAEQGLT-VDEDGFA 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++EQ+ R R+ + T + L T F+GY Sbjct: 417 KAMKEQQDRGRSAHKTIDL-TVQSALEQLAATVHPTDFLGYTDF---------------- 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V A++ +GE V++A +G +V++ DQTPFYAE+GGQ+GD G G + Sbjct: 460 -------SAKAKVAALLVKGETVDQASAGSEVQIALDQTPFYAESGGQIGDRGYLNGKDV 512 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV +K IF+H+ +ERG L L ID RRQ+ +H+ATHLL AL Sbjct: 513 VVRIEDV-QKESDIFIHYGRIERGTLEVGDKLTAQIDLACRRQVQAHHTATHLLQAALKN 571 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ + Q GS + D LRFD +++ +T +++ IE +N IA+ T +M +A Sbjct: 572 IVDESIGQAGSLVAFDRLRFDFNYNQAVTPEQIQEIETQINTWIAEAHTTETEVMPIAEA 631 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V S LCGGTHV +T EI L IV+E+ + +G Sbjct: 632 KAKGAVAMFGEKYGAEVRVMDVPG-----VSMELCGGTHVKNTSEIGLFKIVTEAGVASG 686 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEAI G +L +D ++ L+ K + R+ + + + Q K Sbjct: 687 VRRIEAIAGPAVLEYLNVRDAVVRDLSDRFKAKPEELPERITTLQADLKTAQKQLDTLKA 746 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 QL + +V + + VDS+ LK+ L +K+ G ++L + E Sbjct: 747 QLALVKSEQLLDQAEPAGEVKVLVSQLEGVDSESLKTAAGRLLQKLGEGAVVLGSVPAEG 806 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S++ + +++ A AK GGGG GGRP++AQ+GG + +K A+ Sbjct: 807 KVSLVAAFSPKVIEQGLQAGKFVGAIAKQCGGGG-GGRPNLAQAGGRDPSKLADALDDAQ 865 Query: 894 SFL 896 L Sbjct: 866 KQL 868 >gi|329770463|ref|ZP_08261842.1| alanyl-tRNA synthetase [Gemella sanguinis M325] gi|328836318|gb|EGF85984.1| alanyl-tRNA synthetase [Gemella sanguinis M325] Length = 873 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 334/913 (36%), Positives = 518/913 (56%), Gaps = 57/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL+FF + GH++ PS+SL+P +DPTL++ NSG+ K F G+ P Sbjct: 1 MKQLTSTEIRRMFLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGRVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK A+ AW+ LT K Sbjct: 61 PRITNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAVAWAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L++ +L +T++ ED EA+ +W GL ++IIRI NFW + E GP GP +EIF Sbjct: 117 WLGLEKEKLSVTIHPEDTEAYDIWHNQIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WN+VF Q+ LP +IDTGMGLER Sbjct: 174 YDRGEETDTKSPKEEMYPGGENERYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 +A+VLQ+ N+D DLF +I E+++G KY NN +VI DH+R+ F IADG Sbjct: 234 IASVLQDVPTNFDTDLFMPIINEIEKLSGKKYGVNNEKDEAFKVIADHIRTVVFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L M L + M YP + ++ +++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLELNNSFMYKLTDVVAEIMNDYYPNVKESADFVKDV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E++RF +TL+ G +L+G++S + +I++G AFKLYDT G P+++ ++ G Sbjct: 354 ILKEEDRFHETLNEGEAILNGIVSEVKDTTKIISGKDAFKLYDTFGFPIELTEEYAEEYG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +DI FN+ +E+Q+ RAR+ S + +S G ++FIGY Sbjct: 414 LK-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--RIIGNSEFIGYTQFE----- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 VSS + AIV ++ ++++ + V+VVF++TPFYAE+GGQ+ Sbjct: 466 ------------------VSSKLLAIVDKEDNLLDKYSDEEVVKVVFEKTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + +G + ++ DV+K + +H V G + L + R + NH+ Sbjct: 508 ADHGEILANGFKAKVLDVKKLPDKRHIHFVKVLEGEFKVGNEYELIVSRDFRLNVEKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL+ AL +GSH+ Q GS +T + LRFD+TH P+T E++ +E VN I L Sbjct: 568 ATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALE 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T M +A GA AL G KY D VRVVS+ G +S LCGGTH S++ E+ + Sbjct: 628 IKTEEMPIAEARKLGAQALFGEKYGDIVRVVSI-----GDYSIELCGGTHNSNSSEVGIF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++SE+ + AG+RRIEA+TG+ A +L Q+E L+++ K + NVV +V + E + Sbjct: 683 KVISETGVAAGVRRIEALTGRAAYEYLRQQEETLRTVEKLTKANASNVVEKVTNLQTEIK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 KL + ++ +L + ++ +N ++ ++ + LK ++D + K+++ Sbjct: 743 KLSKEKESLQQKIANAELNNLVNNIKEVNGINVLTSLVESENMNHLKQLVDNAKSKLENY 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II I + K + ++ V + + D++NA L + A V G GGGRP MAQ+G N + Sbjct: 803 IIAFASI-NDDKVNFVVAVDKAITDKYNAGKLVNILATVCE-GRGGGRPDMAQAGAKNKD 860 Query: 884 KADQAIAGVASFL 896 D+A + + + Sbjct: 861 NIDKAFEELIANI 873 >gi|312880061|ref|ZP_07739861.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] gi|310783352|gb|EFQ23750.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] Length = 880 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 345/906 (38%), Positives = 518/906 (57%), Gaps = 46/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL +F++ G PS SL+P +DPTL+FT +GMVPFK F G + P TT Sbjct: 6 AAKLREQFLSYFEEKGSRRYPSFSLVP-DDPTLLFTIAGMVPFKPYFLGLKTPEVTRATT 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR ND+DNVGRT RHHTFFEMLGNFSFG YFK I AW LT+ LD Sbjct: 65 AQKCVRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWTFLTERVGLDPN 120 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 R+Y TVY +D+EA +W+ GL+AD++IR+ DNFW+ GPCGPCSE+ +DQG Sbjct: 121 RMYATVYRDDDEAADIWRNSVGLAADRVIRLGEEDNFWAAGPVGPCGPCSELLYDQGPAF 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P +RY+EIWNLVFMQF + LPK +IDTGMGLER+++V+Q+ Sbjct: 181 SCGSPDCAPGCSCDRYLEIWNLVFMQFNRDEAGVLTPLPKKNIDTGMGLERLSSVVQQVK 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 ++++ DLF+ L+ + + G+ Y + + RVI DHLR+++F+IADGILP+NEG GY Sbjct: 241 SDFETDLFRPLVDKACSLAGVSYGAGPGSDLAVRVIADHLRATAFMIADGILPSNEGTGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ + RLL EP ++ LLP + + Y EL++ + I + + E+ RFG Sbjct: 301 VLRRLLRRAVRFGRLLDLREPFLLELLPQVEATLADPYQELLRYRSTIAQVVDLEERRFG 360 Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TL++G LL+ + + + L+G+VAF+LYDT+G P+++ +++ GL+ +D Sbjct: 361 RTLEQGSDLLEQEIGCTKRSGGKELSGEVAFELYDTYGFPVELTEEMCSEAGLS-VDQKG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F QA+E Q+ RARA S + + L ++ G T F+GY++ Sbjct: 420 FAQAMERQKERARASSKQTCATMGSNAYTELADRQGPTVFLGYEMEE------------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V A+++ G +++ A G+ EVV D+TPFYAE GGQ+GD G G+ Sbjct: 467 ----------ARGTVLALLRDGVLLDRAEEGETAEVVLDRTPFYAERGGQVGDQGTLSGE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+ ++ D + H + +G+L +L +D R + +H+ THLLH AL Sbjct: 517 GLEAEVEDTVHPCGDLVAHRVRIRKGVLLPGATLEARVDGARRGDIRRHHTTTHLLHEAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 + +LG HV Q GS ++P+GLRFD H P+T +++ +ED VN+ + +NLPV TR + E Sbjct: 577 TQVLGDHVRQAGSLVSPEGLRFDYNHFAPLTPEQIQEVEDRVNEQVLKNLPVTTRETDLE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A GA AL KY +RVRVVSVE +S+ LCGGTHV +TGEI L+ + + I Sbjct: 637 TAKALGAKALFEEKYGERVRVVSVEG-----YSTELCGGTHVCATGEIGLVKVHKDEGIG 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRI+A +G+ + L+ + S L V + + + EE++ L+ + Sbjct: 692 AGLRRIQATSGRASLRWSQEVSTVLRDVTSLLTVDPDALCEKTASLLEEHKALERKWRQA 751 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 LQ + L ++ DV + ++D+ L+ + D ++ + S + +L + Sbjct: 752 LLQTELMRLDAVVMGRKRVGDVEVVISFYEDLDTDLLRQIGDQVKGRFPSSVSVLATKNA 811 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 EK V++ E + +A LA+ +L G GGG+P MAQ GG + V Sbjct: 812 EKFLVVIMATDEAVAKGVHAGKLAKSLGALL-GCNGGGKPQMAQVGGKFTTPLKGPLESV 870 Query: 893 ASFLKK 898 + + Sbjct: 871 PQMVAE 876 >gi|329724728|gb|EGG61234.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU144] Length = 876 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 343/911 (37%), Positives = 513/911 (56%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 4 MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K Sbjct: 64 VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 ++ +LY+T++ ED EAF++W + GL +IIRI NFW + E GP GP +EIF+D+ Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176 Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G P E ERY+E+WNLVF +F LP +IDTGMGLERM + Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293 + Q NY+ DLF +I+ E V+G KY ++ V +VI DH+R+ SF IADG LPA Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ ++S Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ L+ Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ +F Q +++QR RAR S + LK +QF+GY+ Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S++ I+ GE V+ +G+ + + +TPFYA +GGQ+ D G Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + +TDV K G +H IV+ G + ++ ++RR + NHSATHL Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I + + V + Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T EI L+ IVS Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLVKIVS 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771 ES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ EE + L Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745 Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +R L++ + I ++ ++ + + K ++S MD + K+Q II+ Sbjct: 746 KQLEQRNKEITSLKMGDIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LVG + K SV+ V + L ++ A DL + ++ GG GGGRP MAQ GG K Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863 Query: 887 QAIAGVASFLK 897 +A+ + ++K Sbjct: 864 EALRFIKDYIK 874 >gi|33860604|ref|NP_892165.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|41018179|sp|Q7V3N0|SYA_PROMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33633546|emb|CAE18503.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 886 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 315/907 (34%), Positives = 502/907 (55%), Gaps = 52/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G ++ + T Sbjct: 11 TGDEIRKEFLNFYHEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+T + L Sbjct: 70 SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIEWAWELVTDIYGLSA 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V+ ED+++ K+WK+ G+ +II++ DNFWS +TGPCGPCSE++FD Sbjct: 126 ENIIVSVFHEDDDSVKIWKEDIGIHPKRIIKLGEKDNFWSSGKTGPCGPCSELYFDFKPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+K N Sbjct: 186 -KGVQNIDLEDGDRFIEFYNLVFMQYNRDPDGQLTDLKYKNIDTGMGLERMAQILQKKKN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ + +++ + Y ++ ++I DH+R+ LI+DG++ +N GRGY Sbjct: 245 NYETDLIFPIIQKASEISKIDYYSSGERTKISLKIIGDHIRAVIHLISDGVIASNLGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG + L M YP+L I ++ E+ RF Sbjct: 305 ILRRLIRRMVRHGRLLGLKNEFLSKLASVGIKLMQENYPDLKNNCDHILSEIKIEEIRFR 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LLD ++S +++ G AF+LYDT+G PL++ ++I G+D+ F+ Sbjct: 365 ETLERGEKLLDELISS--GQKMITGFKAFELYDTYGFPLELTEEIAQENN-IGVDVKGFD 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + Q+ RA+A S + + + + + T F GYD L Sbjct: 422 KEMSAQKERAKAASQIIDLTLEGSLEREI-DLFDKTLFNGYDSLDSD------------- 467 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + +K I + +V++A GQKV +V DQT FY E+GGQ+GD G + + + Sbjct: 468 ----------AEIKGIFLESTLVKQASEGQKVLIVLDQTSFYGESGGQVGDIGTILSNDL 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D + + +F+H+ IV++GIL + ++ R + + NH+ATHLL AL Sbjct: 518 EVVV-DNVIRKKNVFLHYGIVKKGILSLGQKVKTKVNDLARAKAAANHTATHLLQSALKV 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ V Q GS + + LRFD SKPIT ++ +E VN I +N + + M + +A Sbjct: 577 VVNESVGQKGSLVAFNKLRFDFNSSKPITKDQIFKVETLVNSWILENHSLNIKNMAKSEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA A+ G KY+D VRVV V S LCGGTHV +T E+ I+SE I AG Sbjct: 637 LERGAVAMFGEKYDDEVRVVDVPS-----VSMELCGGTHVKTTSELGCFKIISEEGISAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA++GQ A + ++ + L LK + ++ RV + E K K Sbjct: 692 VRRIEALSGQSAFEYFSDKNSLVSQLCDLLKANPNQLLDRVNSLQSELINKNKEIQKMKD 751 Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 ++ S +K+ + + + +D L+S L K+ ++++G +K Sbjct: 752 EIAYFKYSSLSSSANKVGLFSLIISQLDGLDGNSLQSAALDLTSKLGDKSVVILGGIPDK 811 Query: 835 ---KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K ++ EDL+ R +A L +++ GG GGG+P+ AQ+G + +K + A+ Sbjct: 812 ENRKLLFVVSFGEDLVKRGMHAGKLINDISRICSGG-GGGKPNFAQAGAKDIDKLNDALE 870 Query: 891 GVASFLK 897 L+ Sbjct: 871 YARKDLR 877 >gi|194337650|ref|YP_002019444.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194310127|gb|ACF44827.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 888 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 330/924 (35%), Positives = 502/924 (54%), Gaps = 68/924 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL++F + H ++ S+ +IP +DPTL+FTN+GM FK++F G+ Y Sbjct: 1 MKSWEIRQSFLDYFAQKAHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKQEAITWAWELLTDVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +D+E+F++WK + ++ D IIR DNFW M ETGPCGPCSEI D E Sbjct: 121 KERLYATVYQDDDESFQIWKTATDINPDHIIRFGEKDNFWEMGETGPCGPCSEIHIDLTE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + R IE+WNLVF+Q+ +Q+ LP +DTGMG ER+A VLQ K Sbjct: 181 D-GSGHSLVNVGDYRVIELWNLVFIQYNRQSDGSLEPLPMKHVDTGMGFERVAAVLQGKG 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV----NHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F+ L ++TG++Y + RVI DH R+ +F ++DG +P+NEGR Sbjct: 240 SNYDSDVFQPLFDRITEITGVRYGASMDDPLDIAMRVIADHARTLTFALSDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y++ LGY EP++ L+ L MG +PEL + + + + +R+E+E Sbjct: 300 GYVLRRILRRALRYSKNLGYNEPILHQLVGTLAASMGDVFPELRKQQETVSKIIRAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + V+ + + G+ AFKLYDT+G P D+ + + G + +D Sbjct: 360 FIVTLDRGIEIFNEVIEQVRSANSTTITGEDAFKLYDTYGFPFDLTRLMASDVGFS-VDG 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +++Q++RAR + + ++F GYD L + + + Sbjct: 419 EGFEHCMQQQKTRARTDRKEKHQVQDDGSQWLWFSDVHRSEFAGYDQLEMPVLITGIKHL 478 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 K+ +V D+TPFYAE+GGQ+GD G Sbjct: 479 QG--------------------------------KLLLVLDRTPFYAESGGQVGDRGWIE 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL------------VLTIDYQNRRQL 583 RLQ++D K + I IL T +S+ ++D R+ Sbjct: 507 SATYRLQVSDTIKDGDAIVHLVTEAFDKILDTPISVDDLQLDEKELSAEASVDRHLRQDT 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHL+H AL ILG HV Q GS + + LRFD +H +T AE++++E +VND I Sbjct: 567 ECNHTATHLMHSALRRILGQHVQQKGSYVNAERLRFDFSHFSRMTEAEIEAVEADVNDHI 626 Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + PV + +DAIA GA A G KY DRVRV+ + S LCGGTH + Sbjct: 627 RRAEPVQKHADVLYDDAIAMGALAFFGDKYADRVRVIEIPG-----ISVELCGGTHADNI 681 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761 G I L IVSESS+ +G+RRIEA+TG+ A L + +L+ + LK V+ ++ Sbjct: 682 GRIGLFKIVSESSVASGVRRIEALTGKAAEKLLWKEYHELQQVRHLLKAKGDEPVLEKIV 741 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDAL 816 + + ++L+ + ++ V L+ I+ M+ ++ EVD L+ AL Sbjct: 742 ALMDAKKELEKELSGSRVGSLVTSLTAELDASPDISGCRVMTKVLEEVDGDTLRQAALAL 801 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874 + + S +L + ++ K +++ ++ + +A L R +A+ + GG GGG+P Sbjct: 802 RDQATSVAGLLCSV-EDGKIALVSFASDKAVREFGIDAGKLIREAAQCVHGG-GGGKPEF 859 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 A +GG N +A + +++ Sbjct: 860 ATAGGKNPEGIQKAFDTFLAAIRE 883 >gi|330813881|ref|YP_004358120.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063] gi|327486976|gb|AEA81381.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063] Length = 900 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 49/919 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R TF +FF+ N H+++ SS L+P NDPTLMF NSGMV FKN+FTG E+ Y+ Sbjct: 4 KTLQDVRKTFKDFFKANDHQIVDSSPLVPQNDPTLMFANSGMVQFKNVFTGLEQRDYKRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW L+TKE+ L Sbjct: 64 TTAQKCVRAGGKHNDLENVGFTPRHHTFFEMLGNFSFGDYFKEEAINYAWQLITKEYSLP 123 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+TV+ ED+EA+ LW KI+G + D+II+I T+DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 124 KDKLYVTVFSEDQEAYDLWHKITGFNEDRIIKIPTSDNFWSMGDTGPCGPCSEIFYDHGD 183 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GGLPG+ E+G+R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLERM VLQ Sbjct: 184 HLFGGLPGTKDEDGDRFIEIWNLVFMQYEQVSKDKRINLPKPSVDTGMGLERMTAVLQGT 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY IDLFK +I +E + K N ++RVI DHLR+S+FLI+DG+LP+NEGRGYV Sbjct: 244 HDNYQIDLFKKIILDTESLFEQKLSEKNTASYRVIADHLRASAFLISDGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM ++ +LG T+P++ +LP + M YP+L AK LI+ET+ +E+ERF Sbjct: 304 LRRIMRRAMRHSNVLGKTDPILYKVLPTIIELMKEEYPQLENAKDLIKETVVTEEERFSS 363 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 L GL +L+ + + DE L G VAFKLYDT+G P+D+ QD+L + + ID F + Sbjct: 364 LLKNGLKILNDEVKKIK-DETLPGSVAFKLYDTYGFPVDLTQDVLKEKNIK-IDHDEFKK 421 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSL-----KEKYGATQFIGYDLLRGSKFMKEDRKV 475 E+ + ARA G GS +KIWF + KEK T+F GY Sbjct: 422 LREQSKVEARASWKGTGSVGIDKIWFEIVSGQNKEKLADTEFFGY--------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ + S + +IV++ + E G ++F+QT FYAE+GGQ+ DTG Sbjct: 467 --------GSDQIESKLLSIVKEKKASLEIREGDSASLIFNQTVFYAESGGQISDTGTIE 518 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + +++D QK +VH +V++G L+ + +L ID + R ++ NHSATHLLH Sbjct: 519 SNEVLFEVSDTQKIFGTFYVHSGVVKKGTLKLGDNFILKIDKKRRDKIKCNHSATHLLHA 578 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HVSQ GS + PD LRFD +HSKPI+ E+ + NVN ++ V T +M Sbjct: 579 ALREKLGKHVSQKGSYVGPDRLRFDFSHSKPISKQEIVELNKNVNAVVINGGEVKTTLMT 638 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + AI GA AL G KY D VRVV++ + S LCGGTHV+ I I++ESS Sbjct: 639 PKKAIEQGAMALFGEKYGDEVRVVTMGNFNNKTFSIELCGGTHVTELSTIDNFEIINESS 698 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYR---- 768 I +G+RRIEA+ G +H ++ K + L + ++++ E+++ Sbjct: 699 IASGVRRIEALRGDELSTHKQSLNKLAKEKETSLNSQIKGLESNIKKLNGNLEDFKDFSP 758 Query: 769 -----KLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQK 818 KL+ ++ + ++D + I D I + K+L++++D +K Sbjct: 759 EVKLVKLKSLYESLYKKNILQDSKKNIIKDYPLKDLTVRIQYIYGLSGKDLRTIVDDNKK 818 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +I S + + K ++ + +T++L + +A A+ +K L G GGGGR AQ+G Sbjct: 819 EIGSSAVFTFS-ELDNKLNIAVGITDELTNNLDASFFAKEISKFLKGKGGGGRKDFAQAG 877 Query: 879 GPNGNKADQAIAGVASFLK 897 G + V ++ Sbjct: 878 GEPPSNLKTVYDFVLKLVE 896 >gi|118475098|ref|YP_892193.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40] gi|205830013|sp|A0RPR0|SYA_CAMFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118414324|gb|ABK82744.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40] Length = 845 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 352/897 (39%), Positives = 518/897 (57%), Gaps = 59/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64 IR +L+FF+ GHE++ S+ L+P +D TL+FTN+GMVPFK+IFTG + T+ Sbjct: 2 DIRKEYLDFFKSKGHEIITSAPLVP-DDATLLFTNAGMVPFKSIFTGDVPRPNPPIRTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ L + + Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAISYAWEFVTEVLKLPKDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV+++D+EA++LW+K + D+I R DNFW+M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHEKDDEAYELWQKF--IQKDRIYRFGDKDNFWAMGDTGPCGPCSEIFYDQGSEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQFE+ LPK SIDTGMGLER+ + ++K +N Sbjct: 179 NSDEDYMGGDGDRFLEIWNLVFMQFERSKDGTMTPLPKPSIDTGMGLERVTAIKEDKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YD LF LI ++ +YE ++RVI DH+RS +FL+A G+ EGRGYVLRR Sbjct: 239 YDSSLFMPLINEVAKLCHKQYEYKTGASYRVISDHIRSVTFLLAQGVNFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M L+ + MG Y L + K ++E ++ E+ERF T+ Sbjct: 299 ILRRAVRHGYLLGIKEPFMYKLVDKVVELMGEHYSYLKEKKEYVKELIKLEEERFLATIV 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 GL L + L+ + +G+VAFKLYDT+G PLD+ D+L +GL+ +D F+ + Sbjct: 359 AGLDLFNEELAKTS-SNVFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VDEAKFDALMN 416 Query: 424 EQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQ++RA+A G G E + +L E++G +FIGYD L+ Sbjct: 417 EQKARAKASWKGSGDAAKESGDFKTLLEEFGENKFIGYDNLKS----------------- 459 Query: 483 DLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 SS V A++ + + V E +G+ V+ D TPFYA++GGQ GDT L Sbjct: 460 ------SSKVLALLNSEFKRVNELKNGEIGYVMLDSTPFYAQSGGQCGDT-------GML 506 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + ++ +++E +VL NR ++ +HSATHLL AL +L Sbjct: 507 GENQALDTKKYFGLNLSMIEAKNSIKIGDIVLCEVSLNRLEIRRHHSATHLLQAALRNVL 566 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G+H++Q GS + D LRFD +H KP+T EL+ IE+ VN+ I + P IM+ ++A Sbjct: 567 GAHIAQAGSSVEADKLRFDFSHPKPVTKEELEKIENFVNEAILKGAPAKIEIMDIQNAKK 626 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY D+VRV+++ S LCGGTHV + EI +IV ES + AG+R Sbjct: 627 SGAIALFGEKYADKVRVLTLGP------SKELCGGTHVENLNEIGSFFIVRESGVSAGVR 680 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A +++ + LK + + ++++ +E + LQ K Sbjct: 681 RIEAVCSKAALELSKEFRKEINDIKDSLKGADPLLS--IKKLKDEIKSLQND---LKNAS 735 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 N +DL I V + ++KS +D L+ K ++ L G+ K+ K S+ Sbjct: 736 NTKDLDVKDINGVKVVVSKFDG----DIKSKIDELKNKFDKVVVFLAGV-KDGKVSLGSG 790 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +++ A +L + A ++GGGG GGR A +GG + +K D+A+ F+ + Sbjct: 791 -SKNTS--IKAGELVKTVAPIVGGGG-GGRDDFATAGGKDESKIDEALNAATKFISE 843 >gi|119513305|ref|ZP_01632344.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414] gi|119462040|gb|EAW43038.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414] Length = 880 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 332/906 (36%), Positives = 507/906 (55%), Gaps = 49/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL FF + GH++LPS+SL+P DPT++ T +GM+PFK IF GQ + T Sbjct: 9 SGNEIRDIFLNFFAQRGHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTAEFNRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI W+L T+ F L Sbjct: 68 TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKPQAIAWGWELSTQVFGLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L ++V+++D+EA+ +W+ G+ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 124 EKLVVSVFEDDDEAYNIWRDDIGVPEARIKRMGEDDNFWVSGHTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GDENIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ G+ Y ++ + +VI DH+RS +IAD I +N GRGY Sbjct: 243 NYETDLIFPIIETAAEIAGIDYHKSDETTQVSLKVIGDHVRSVVQMIADEIRASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RLLG + + + SAYP + Q + I+ L+ E+ F Sbjct: 303 VLRRLIRRVVRHGRLLGINSEFITQVAETAISLSESAYPNVRQREAAIKAELQREEANFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TLDRG LL+ ++ + + ++G+ AF LYDT G PL++ Q+I +D Sbjct: 363 RTLDRGEKLLEEIIQEVKQQGKTSISGESAFTLYDTFGFPLELTQEIAAE-NQLTVDEAG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN +++Q RA+A + T + L E AT+FIGY G Sbjct: 422 FNTEMQKQVERAKAAHETIDL-TVQGSLDKLAEHIQATEFIGYTQPVG------------ 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V+AI+ G EEA +G ++++V +QTPFYAE+GGQ+GD G G Sbjct: 469 -----------TANVEAILIDGIAQEEAEAGTEIQIVLNQTPFYAESGGQIGDKGYISG- 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L + K+ F+H +ERG +R S+ ID RR+ NH+ATHLL AL Sbjct: 517 DGVLVRVEDVKRESDFFIHFGRIERGTIRVGDSVTAQIDRTCRRRAQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ +SQ GS ++ D LRFD + +T+AE++ +E VN IA+ ++ Sbjct: 577 KKLVDDSISQAGSLVSFDRLRFDFNCPRGLTAAEVEQVEAQVNTWIAEAHTANIEVLPIA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY + VRV+ S LCGGTHVS+T EI + I+SE+ + Sbjct: 637 EAKARGAVAMFGEKYGEEVRVIDFPS-----VSMELCGGTHVSNTAEIGIFKIISEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R + A Sbjct: 692 SGVRRIEAVSGPAILDYLNVRDKVVKDLSDRFKVKPEELPERITTLQTELRNSEKQLATL 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + + + + +VD + LK+ + L +KI +G ++L + + Sbjct: 752 KSQLAIAKSDSLLQTVESVGEYQILVAQMEDVDPESLKTAAERLLQKIGNGAVVLGSVPE 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + NK +A+A Sbjct: 812 AGKVSIVAAFSAEVNKKGLQAGKFVGAVAKICGGGG-GGRPNLAQAGGRDANKLPEALAK 870 Query: 892 VASFLK 897 S L+ Sbjct: 871 AHSDLQ 876 >gi|293366424|ref|ZP_06613102.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319458|gb|EFE59826.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735187|gb|EGG71479.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU045] Length = 876 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 343/911 (37%), Positives = 511/911 (56%), Gaps = 55/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +L FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 4 MKASEIRQKYLNFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K Sbjct: 64 VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 ++ +LY+T++ ED EAF++W + GL +IIRI NFW + E GP GP +EIF+D+ Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176 Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G P E ERY+E+WNLVF +F LP +IDTGMGLERM + Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293 + Q NY+ DLF +I+ E V+G KY ++ V +VI DH+R+ SF IADG LPA Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ ++S Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ L+ Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ +F Q +++QR RAR S + LK +QF+GY+ Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S++ I+ GE V+ +G+ + + +TPFYA +GGQ+ D G Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + +TDV K G +H IV+ G + ++ ++RR + NHSATHL Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I + + V + Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T EI L IVS Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771 ES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ EE + L Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745 Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +R L++ + I ++ ++ + + K ++S MD + K+Q II+ Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LVG + K SV+ V + L ++ A DL + ++ GG GGGRP MAQ GG K Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863 Query: 887 QAIAGVASFLK 897 +A+ + ++K Sbjct: 864 EALRFIKDYIK 874 >gi|152991270|ref|YP_001356992.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2] gi|205830162|sp|A6Q576|SYA_NITSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151423131|dbj|BAF70635.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2] Length = 850 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 342/895 (38%), Positives = 502/895 (56%), Gaps = 50/895 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 IR FL +F H + PS+ L+P DPTL+FTN+GMVPFK IFTG+ T+ Q Sbjct: 2 DIRKEFLNYFASKAHTIYPSAPLVPE-DPTLLFTNAGMVPFKKIFTGEMPAEVPRATSCQ 60 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ +L +L Sbjct: 61 TCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPVEKL 120 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 ++TV++ D+EA K+W+K + D+I R DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 WVTVHESDDEAEKIWQKF--VKKDRIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHFK 178 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ E LPK SIDTGMGLER+ + + +NY Sbjct: 179 GPEDYLGGDGDRFLEIWNLVFMQYERNEAGELLPLPKPSIDTGMGLERITAIKEGVLSNY 238 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF LI A ++ KY + RVI DH+R+ +FL++ G++ +NEGRGYVLRRI Sbjct: 239 DSSLFMPLIDAISDLSKKKYIYKEGASFRVIADHIRAVTFLLSQGVMFSNEGRGYVLRRI 298 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RR + + LLG EP M L + MG Y L + ++E +R+E+ERF +T++ Sbjct: 299 LRRGVRHGYLLGLKEPFMYRLADKVAEIMGGHYSYLYEKLSTVKEQIRAEEERFYQTIEA 358 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L + L+ I +GDVAFKLYDT+G PLD+ +D+L +GL +D F ++E Sbjct: 359 GMRLFEEELAKT--KTIFSGDVAFKLYDTYGFPLDLTEDMLREKGLR-LDKERFETLMQE 415 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QR RA+A G G + L +F+GY+ L+ Sbjct: 416 QRQRAKAAWKGSGDVALSGDFKELL--GLKNEFVGYEKLKAH------------------ 455 Query: 485 TNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 +I+ ++ + + E GQK ++ ++TPFYAE+GGQ+GD G Sbjct: 456 -----TIITGLLDESFKKCESLKPGQKGWILLEETPFYAESGGQIGDRGEIRLYEGEKIA 510 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 + K + ++ + ++ +D R ++ +HSATH+LH AL ILG Sbjct: 511 KVLDTKKFFDLNMSLVEAIKEVKKDEAVEAVVDKSRRE-IAKHHSATHILHSALRKILGE 569 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS + + LRFD +H KP+ + E++ IE+ VN++IAQ + M + A G Sbjct: 570 HVTQQGSLVEANRLRFDFSHPKPLNAQEIERIENFVNEVIAQGIEAKVEEMPIDKAKEKG 629 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVV G S LCGGTHV ++ EI +I ES + +G+RRI Sbjct: 630 AMALFGEKYGDVVRVVEF-----GDVSVELCGGTHVKNSAEIGSFFITKESGVSSGVRRI 684 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G A E L + +K +++ ++++ +E + L+ K ++ Sbjct: 685 EAVCGMSAVKLAKSWRESLVKASEEVKNK--DILLGIKKLKDEIKDLKQEI-KNISSVSA 741 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++L+ +I V + I EVD+ ++K ++D L+ + +ML EK ++ Sbjct: 742 KELASQEINGVRVV---IDEVDAGDIKKIIDDLKNAHEKLAVMLFQKRGEK--VLIAAGA 796 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + + + A D + A V+GGGG GGRP AQ+GG N K +A + K+ Sbjct: 797 KGV--KLKAGDWVKSVAPVVGGGG-GGRPDFAQAGGKNPEKIGEAKKAALEYAKE 848 >gi|42522107|ref|NP_967487.1| hypothetical protein Bd0501 [Bdellovibrio bacteriovorus HD100] gi|48428503|sp|P61698|SYA_BDEBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39574638|emb|CAE78480.1| alaS [Bdellovibrio bacteriovorus HD100] Length = 907 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 370/938 (39%), Positives = 524/938 (55%), Gaps = 76/938 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR F+++F+KNGH+++PSSSLIP NDPTL+F N+GM FKN F G EK Y Sbjct: 1 MKSSEIRNAFIKYFEKNGHKVVPSSSLIPENDPTLLFANAGMNQFKNTFLGLEKRDYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI AW+ LTKE + Sbjct: 61 VTAQKCVRAGGKHNDLENVGFTARHHTFFEMVGNFSFGDYFKKDAIHFAWEFLTKELAIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+TV+ D+EA +W G+ ++I R DNFW M +TGPCGPC+EIF+D G Sbjct: 121 KEKLYVTVHISDDEAADIWHNQEGVPRERIFRF-DKDNFWKMGDTGPCGPCTEIFYDHGP 179 Query: 182 C---IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 I G +R++EIWNLVFMQ+ + LPK S+DTG GLERM+ +Q Sbjct: 180 KAGTISDPFKGIEAGEDRFVEIWNLVFMQYFENPPGTLTPLPKPSVDTGGGLERMSAAMQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI------------VNHRVIVDHLRSSSFLI 286 NNYD DLF+ +IQ + ++ ++Y + RV+ DH RS+SFLI Sbjct: 240 GVFNNYDTDLFQPMIQLACKIGNIEYISDKEVLAKNPAAAEVTSALRVLADHCRSTSFLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG LP+NEGRGYVLRRIMRRA+ Y R L + + + AL MGS YPEL + Sbjct: 300 ADGALPSNEGRGYVLRRIMRRAIRYGRKLSADKSFLPGMAEALIESMGSVYPELKTRRDH 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDI 404 I T+R E++RF TLD+G +L+ L I L+G+V F++YDT+G P D+ + I Sbjct: 360 ILNTIRDEEDRFIATLDKGTAILEDELKKAKSKGIKELSGEVVFRMYDTYGFPADLTRVI 419 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT----QFIGY 460 +G ++ +F + +E+ R++++A G G E + Y + F+GY Sbjct: 420 ANEQG-IEVNEAAFEKEMEDNRAKSKASWKGKSMGADEAHMIKFAKDYLQSGKSVTFLGY 478 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + G V + V+E +G ++ + T F Sbjct: 479 EGTIGD-----------------------GKVMGLSNGQAEVQELKTGDTGLMILNATTF 515 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 Y E GGQ GD G + D R ++ + K + I +HH +E G + ++V +D R Sbjct: 516 YGEGGGQSGDVGYIMHDTNRARVINT-TKIDDIVLHHVEIEHGSFKVGTAVVTGVDPVER 574 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 R + NHSATHLLH AL +LG+HV+Q GS + RFD TH+KP++S E+K IED VN Sbjct: 575 RNTAANHSATHLLHAALRKVLGTHVTQAGSLVDSQKTRFDFTHNKPVSSEEIKKIEDLVN 634 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + IA+ PV T +M+ + A+ GA AL G KY VRV+++ G S LCGGTHV Sbjct: 635 EQIARCNPVQTEMMSHKAALEKGAMALFGEKYASDVRVLTM-----GDFSCELCGGTHVK 689 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS---LASFLKVS----- 752 +T EI L IVSE+ + +G+RRIEAIT A ++M L A F K Sbjct: 690 NTSEIRLFKIVSEAGVSSGVRRIEAITADNALQYMMSAVTHLDDALAAAGFQKSPHYIKH 749 Query: 753 ------QGNVVGRVEEIWEEYRKLQLIHAKRK-LQLNVEDLSCHKI-------ADVNFMS 798 + RVE + ++ ++L+ K + Q+NV+DL+ + + A + Sbjct: 750 LETTGETATLANRVESLKDQVKQLEKEMKKLQGGQVNVDDLAANALTFKTKAGASAKLVL 809 Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 + D + L V D L+ KIQSGI+++VG + +++ V++++ A DL + Sbjct: 810 ADVPLDDRQVLAEVTDHLKNKIQSGIVVVVG-QGDGSHPIIVSVSKEISGETKAGDLLKE 868 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A V+GG G GGRP AQ PN + ++A + V S L Sbjct: 869 VAGVMGGKG-GGRPDFAQGAAPNRAQLNEAFSKVKSML 905 >gi|169334468|ref|ZP_02861661.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM 17244] gi|169259185|gb|EDS73151.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM 17244] Length = 874 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 332/905 (36%), Positives = 519/905 (57%), Gaps = 46/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++ +R FLEF++ GH L S SL+P ND +L+ NSGM P K F G+E P + VT Sbjct: 5 SLNELRKMFLEFYESKGHLRLESFSLVPHNDKSLLLINSGMAPLKPYFIGEEVPPKKRVT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+DNVG+T RH TFFEMLGNFSFG YFK+ AI AW+ LT++ LD+ Sbjct: 65 TCQKCIRT----PDIDNVGKTARHGTFFEMLGNFSFGDYFKKEAIAFAWEFLTEKIGLDK 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY+ D+EA ++WK GL+ ++I R+ DNFW + GPCGPCSEI+ D+GE Sbjct: 121 DKLYVSVYENDDEAAEIWKNDIGLTDNRITRLGKEDNFWEIG-LGPCGPCSEIYVDRGEE 179 Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P + +RY+E+WNLVF QF++ + L +IDTGMGLER+A +QE Sbjct: 180 YGCDRPTCGVGCDCDRYMEVWNLVFTQFDKDKEGNYNKLEHPNIDTGMGLERLAAYVQEV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N +++D ++++ +++G KY N+ V+ RVI DH+RSS F+ +DGIL +NEGRG Sbjct: 240 DNIFEVDTIRYILDYICEISGKKYGVNENDDVSIRVITDHIRSSVFMASDGILTSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVL+RI+RRAM + +LLG M + + G AYP L + + I + + E+E+F Sbjct: 300 YVLKRILRRAMRHGKLLGIEGHFMEGVAKKVIEISGEAYPALREKETTILKLINIEEEKF 359 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +T+++GL ++D ++++L + L G AFKLYDT+G PL++ ++IL +GL +D F Sbjct: 360 NETVNQGLSMIDELIANLK-GDTLGGLDAFKLYDTYGFPLELTEEILEEKGLK-VDKNGF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A++EQ+ +AR+ + + + +T+F GY+ L Sbjct: 418 EKAMQEQKDKARSARNNKEIVSYKGDLTNFIANLPSTEFSGYESLSD------------- 464 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 V I++ E ++ G+ V+F++TPFYA +GGQ+ D G D Sbjct: 465 ----------KGKVIEIIKDNEAIDILNEGEIGLVIFNRTPFYATSGGQVHDIGKIEDDK 514 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ V K + FVH + G L + +T+D QNR NHSATHLLH AL Sbjct: 515 VNAKVKSVTKSGDK-FVHEVEIISGSLEADKEYSMTVDKQNRLNTERNHSATHLLHKALK 573 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + + LRFD +H + +T+ EL IE VN I V + ++ Sbjct: 574 EVLGEHVNQAGSYVDSERLRFDFSHFEKVTNEELDEIEKRVNAEILNKDEVNYFETSIDE 633 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA AL G KY VRVV + G +S LCGG HV++T +I + I+SESS+ + Sbjct: 634 ARKLGATALFGEKYGSNVRVVKM-----GDYSIELCGGCHVNNTNDISMFKILSESSVAS 688 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEAITG+ A + + +L+++ L+++ N++ +V+E+ + + L + Sbjct: 689 GVRRIEAITGKCAIEESLEKYHELQTIKDKLRLNNNNIIEKVDELLNKNKSLLKELEAFR 748 Query: 779 LQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + N + +S + + + ++ +L+ + D ++ K+++ I+ LV ++ E Sbjct: 749 KEANKDVVSGIIDNAFDVNGTKCVFAKVDGLNVNDLRELSDKVKDKVENVIVFLVSVAGE 808 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + E + D FN + A +G G GGGRP MAQ+G + +KAD A+ Sbjct: 809 KGFMIASASKEAVKDGFNCGKFIKDVAVSIGSG-GGGRPDMAQAGIKDISKADMALENAK 867 Query: 894 SFLKK 898 F+K+ Sbjct: 868 GFIKE 872 >gi|227833217|ref|YP_002834924.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] gi|262184203|ref|ZP_06043624.1| alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] gi|227454233|gb|ACP32986.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] Length = 895 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 330/928 (35%), Positives = 488/928 (52%), Gaps = 67/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F + F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MKTHEIRERFTQHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFANG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTNSVE 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 LD RL++TVY +D+EA +W G+ ++I R+ DN+WSM GPCGPCSE Sbjct: 116 DGGLGLDPERLWVTVYLDDDEAADIWHDKIGVPRERIQRLGMEDNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228 I++D+G G G E+ +RY+EIWNLVFMQ E+ + LPK +IDTGM Sbjct: 176 IYYDRGPEY-GQDGGPVEDDDRYMEIWNLVFMQNERGEGIGKGNFEIIGELPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284 G+ER+A +LQ N Y+ DL + +I +E++TG KY +++ RV+ DH R+ Sbjct: 235 GIERVACILQGVDNVYETDLLRPVIDVAEELTGAKYVPDAPKEDLIRFRVVADHSRTGMM 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + + Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGETMERFMNTIMDTMTPSYPEIAENR 354 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDTHGLPL 398 I +E++ F KTL+ G L D ++ L ++L+G+ AF+L+DT+G P+ Sbjct: 355 ERILRVALAEEKAFLKTLESGTKLFDEAVTELKNTSRAATPKVLSGEKAFELHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ GL +D+ F+ A+ EQR RA+A + G + + T F Sbjct: 415 DLTLEMAQEAGLT-VDMEGFDAAMGEQRRRAKADNQAKKHGHADLSLYREWVDNHPTLFT 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY+ L + V +V+ GE V E +G VEV+ DQ+ Sbjct: 474 GYETLES-----------------------EAKVLGLVRDGEKVSEVQAGDTVEVILDQS 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 P YAEAGGQ D G I L++ DVQK + ++VH A V G L + +D Q Sbjct: 511 PLYAEAGGQTADRGRIIAGETLLEVNDVQKIGKKLWVHKATVTAGGLELGNGVTAAVDEQ 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R HSATHL+H AL +LG Q GS P LRFD ++ +T +L I Sbjct: 571 WRHGAVQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTDQLTQEQLDEIALV 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N + Q+ PV T + + A GA AL G Y VRVV + GG S LCGGTH Sbjct: 631 TNQAVDQHFPVNTIETSLDKAKEMGAMALFGENYGSEVRVVEM----GGPFSIELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +T EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV ++ Sbjct: 687 VKNTAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPE 746 Query: 759 RVEEIWEEYRKLQLIHAKR-KLQLNVEDLS----CHKIADVNFMSHII-SEVDSKELKSV 812 R+ ++ E+ + + A+ K QL + I D ++ + V+ +L+++ Sbjct: 747 RIAQLTEKLKAAEKQIAELHKAQLMSQTAEMISTAKTINDFTLVAVKLPKGVNGGDLRTL 806 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++ ++ +++L ++ K ++ T+ +R A DL +L + + G GG Sbjct: 807 ASDIKNRLGDVAAVVVLASENEGGKMPFIVGATKAANERGVKAGDLVKLVSGYV-DGKGG 865 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897 G+P MAQ G N A V L+ Sbjct: 866 GKPDMAQGSGVNIEGLQAAFDAVRDELE 893 >gi|21220002|ref|NP_625781.1| alanyl-tRNA synthetase [Streptomyces coelicolor A3(2)] gi|256788900|ref|ZP_05527331.1| alanyl-tRNA synthetase [Streptomyces lividans TK24] gi|289772786|ref|ZP_06532164.1| alanyl-tRNA synthetase [Streptomyces lividans TK24] gi|22096206|sp|Q9KXP9|SYA_STRCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|8249960|emb|CAB93381.1| alanine tRNA synthetase [Streptomyces coelicolor A3(2)] gi|289702985|gb|EFD70414.1| alanyl-tRNA synthetase [Streptomyces lividans TK24] Length = 890 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 339/922 (36%), Positives = 503/922 (54%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSAQDKG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY +D+EA ++W + G+ +++I R+ DN+WSM GPCGPCSEI Sbjct: 116 GYGLDPERLWITVYQDDDEAERIWHDVVGVPSERIQRLGKKDNYWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEEFEILGELPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I + ++TG+ Y V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVINKATELTGVAYGDAQASDVSLRVVTDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F KTL G +LD +S +L GD AF L+DT G P+D+ ++ Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVSDTKASGGTVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + +K GAT F+GY Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADKAGATDFVGYTDTES 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + I+ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + G +++ D QK G++VH +V+ G + +ID + R+ ++ Sbjct: 511 GQIGDTGRIRVDTGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDDRRRKAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A S L + + L +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVAQLQELIKGRPEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + K + + ++ S + V ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAGGLADSAKDVRGVALVTGQVPDGTTADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 +IQ G ++ L K +I E +R A DL R +AK LGGGG GG+P + Sbjct: 806 RIQGGRAAVVALFTTVN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ GG N A+ V + Sbjct: 864 AQGGGQNAAAIGDAVDAVERLV 885 >gi|260893293|ref|YP_003239390.1| alanyl-tRNA synthetase [Ammonifex degensii KC4] gi|260865434|gb|ACX52540.1| alanyl-tRNA synthetase [Ammonifex degensii KC4] Length = 874 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 348/907 (38%), Positives = 529/907 (58%), Gaps = 49/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL++F++ GH +LPS+SLIP DP+L++T +GMVPFK FTG KP ++ V Sbjct: 1 MEAKEIRQRFLDYFRRKGHVILPSASLIPAGDPSLLWTAAGMVPFKPYFTGAAKPEFRRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R D+++VG+T RH TFFEMLGNFSFG YFK AI +AW+ +TKE LD Sbjct: 61 ATCQKCLRT----QDIESVGKTARHLTFFEMLGNFSFGDYFKAEAIAMAWEFVTKELGLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ +V+++DEEAF+LW K G+ ++I+R+ + NFW + GPCGPCSEI++D G Sbjct: 117 IDRLWFSVFEDDEEAFELWCK-MGVKPERIVRLGRDTNFWEIG-VGPCGPCSEIYYDFGP 174 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G + +RY+EIWNLVF+Q+ + K L IDTGMGLER+ATVLQ Sbjct: 175 AFACGPDCHVGCDCDRYLEIWNLVFIQYYRDEKGNYLPLENKGIDTGMGLERVATVLQGV 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 T+ + DLF+ ++ A+E+ +VI DH+R+ +F +A+G+LP+NEGRGYV Sbjct: 235 TSPFATDLFRDIVAAAERELRSP---VPNRRVKVIADHVRAVTFGVAEGVLPSNEGRGYV 291 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RRA+ Y L G EP + + A+C +MG YPEL+ + I +R+E+ERF Sbjct: 292 IRRLLRRALLYGVLAGREEPFLGKVAAAVCDKMGEVYPELVANREHILRVIRAEEERFLG 351 Query: 361 TLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G+ LL+ + ++L G+ AF+LYDT+G PL++ ++I +GL +D F Sbjct: 352 TLSQGMELLNRNIEQVLARGGKVLPGEEAFRLYDTYGFPLELTEEICAEKGL-AVDKEGF 410 Query: 419 NQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 + +E QR RAR + G E+ + L+E+ G+ F+GY+ L Sbjct: 411 KREMEAQRERARRARETVEYLGERERFYRELREEKGSVDFVGYEQL-------------- 456 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V A+V++ + A +G++VEVV D TPFYAE GGQ+ D G Sbjct: 457 ---------NTRSRVVALVKEAKPQSSASAGEEVEVVLDVTPFYAEKGGQVSDKGVLRFP 507 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + V++ EG+ VH V++G L+ + +D + RR+ + NH+ATHLLH AL Sbjct: 508 SGEALVEYVEQPVEGMVVHRVKVQKGELKVGDEVEAAVDAERRRRTARNHTATHLLHQAL 567 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ILG HV Q GS + PD LRFD H + +T E+K +E VN+I+ LPVVT + E Sbjct: 568 KEILGPHVKQAGSLVAPDRLRFDFDHYQALTPEEIKRVEKRVNEIVLAALPVVTFTTSLE 627 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA AL G KY + VRVV + G +S LC GTH+ +T E+ + IV+E+S+ Sbjct: 628 EAQAMGAVALFGEKYGETVRVVKI-----GDYSIELCAGTHLRNTAEVGVFKIVAEASVA 682 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 A RRIEA+TG+RA ++ ++ + +A LK + +VE +E + L + Sbjct: 683 ANTRRIEAVTGERALAYFEELEDDYRRIAFLLKAPARGLSQKVEAWLQEMKALARENEAL 742 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L + +I V ++ + D+ L+S+ D L++K+ + ++L+G S Sbjct: 743 RDKLALYTMQELLDKVQEIDGVKVLAAKVEAPDTARLRSLADLLREKLGNASVVLLGASG 802 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K ++++ T + R NA + + A+V+ GGG GGR Q+GG N + +A+ Sbjct: 803 DGKVNLVVAATPGAVARGINAAQIVKAMAQVVEGGG-GGRAEFGQAGGKNPGRLGEALRL 861 Query: 892 VASFLKK 898 L++ Sbjct: 862 GQELLRQ 868 >gi|119356090|ref|YP_910734.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266] gi|205830021|sp|A1BD33|SYA_CHLPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119353439|gb|ABL64310.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266] Length = 888 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 330/924 (35%), Positives = 500/924 (54%), Gaps = 68/924 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 1 MNSREIRQSFLDFFDRKGHTIVRSAPVIPLDDPTLLFTNAGMNQFKDVFLDKGTRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWHLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +DEE++ LW++ + + D II+ DNFW M ETGPCGPCSEI D E Sbjct: 121 KERLYATVYYDDEESYLLWQEETDIPHDHIIKFDEKDNFWEMGETGPCGPCSEIHIDLTE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + R IE+WNLVF+Q+ +Q LP+ +DTGMG ER+ V+Q K Sbjct: 181 D-GSGKPLVNAGDYRVIELWNLVFIQYNRQADGRLEPLPQKHVDTGMGFERVCAVMQGKA 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKYE----GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F+ L ++TG+ Y + + RV+ DH R+ +F + DG +P+NEGR Sbjct: 240 SNYDTDVFRPLFDRITEITGVSYNASLDDPSDIAMRVLADHARTLTFALTDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y++ LG +EPL+ L+ L MG +PEL + + + +R+E+E Sbjct: 300 GYVLRRILRRALRYSKTLGCSEPLLYRLVETLAASMGDVFPELRKQQQAVSRIIRAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + +++ + +++GD AF+LYDT G PLD+ + + G +D Sbjct: 360 FLATLDRGIEIFNELIAAVRSRGTTVVSGDDAFRLYDTFGFPLDLTRLMAAEAGFE-VDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ ++EQ++RAR ++ ++ + F GY L + Sbjct: 419 EGFDRCMKEQKTRARQDRRDKQHLKGDEGEWTWFSAERTSVFTGYHSLEELASITGVSIF 478 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ VV D+TPFYAE+GGQ GD G Sbjct: 479 S--------------------------------DRLLVVLDRTPFYAESGGQCGDRGWIE 506 Query: 536 GDGIRLQITDVQKKAEGIFV------------HHAIVERGILRTEMSLVLTIDYQNRRQL 583 RL+++D +K + I + + +++ ++D +R+ Sbjct: 507 TAAYRLRVSDTRKDGDMIVHLVTEVRDSVSDGAISPADLSFDEGKLACRASVDRSDRQGT 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL LG HV Q GS ++ + LRFD +H +TS EL +E VN+ I Sbjct: 567 ERNHTATHLLHAALRRTLGQHVQQKGSFVSSERLRFDFSHFARLTSEELAIVESEVNEQI 626 Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 PVV + ++AIA GA A G KY DRVRVV + S LCGGTHV S Sbjct: 627 RSAEPVVKHQDIPYDEAIARGALAFFGDKYADRVRVVEIAG-----LSVELCGGTHVDSI 681 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761 G+I L IVSESS+ +G+RRIEA+TG+ A L + +L+ + LK+ V+GR+ Sbjct: 682 GQIGLFKIVSESSVASGVRRIEALTGKAAEVLLWKEYRELQDIRQMLKLKADEEVIGRIA 741 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 E+ + ++L+ + + L + + + FM+ + VD L+ + AL Sbjct: 742 ELADSKKELEKQLQVYRTEALSGILQRSLDAAESVGSIRFMTLRLEHVDQDSLRQAVLAL 801 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874 ++K + +L ++ K S+ E + +A L R +A + GG GGG+P Sbjct: 802 REKDPASTGLLC-TEEDGKVSLTAFAGERAVGEFGLDAGKLVREAAAFVRGG-GGGKPEF 859 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 A +GG + +A A+ +++ Sbjct: 860 ATAGGKDPEGIQKAFDSFAASVRE 883 >gi|315638099|ref|ZP_07893284.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21] gi|315481947|gb|EFU72566.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21] Length = 844 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 354/896 (39%), Positives = 517/896 (57%), Gaps = 58/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IRT FL FF GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+ T+ Sbjct: 2 DIRTQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKER 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV+++D+EA+ LW+ + + ++I R DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K +N Sbjct: 179 HSSEDYMGGDGDRFLEIWNLVFMQYERSSDGTLSPLPKPSIDTGMGLERVYAIKEGKLSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF LI + G Y + ++RVI DH+RSS+FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M L+ LC MG Y L + K +I+E ++ E+ERF T++ Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEVIKEQIKLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G+ L + L+ I +G++AFKLYDT+G PLD+ QD+L +GL+ ID F + + Sbjct: 359 KGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFERLMS 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ+ RA+A G G + L E++G +F+GY Sbjct: 416 EQKERAKAAWKGSGDKAVSGDFKILLERFGKNEFVGYTQ--------------------- 454 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + ++ E+ GQ V D+TPFYA +GGQ+GD G + I Sbjct: 455 --KACESQILALLDENFKMQEKLHKGQTGWVFLDKTPFYANSGGQVGDKGFLGENEISDT 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + I + L+ + L+ ID R Q++ +HSATHLLH+AL ILG Sbjct: 513 QKFFELNLSKITAKN------ELKLDEKLLAHIDEGKREQIARHHSATHLLHYALRKILG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 +H++Q GS + + LRFD H K +T EL+ IE+ VN++I+ + P + M+ +DA S Sbjct: 567 AHIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAKKS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY ++VRV+S+ S LCGGTHV+++ EI +I+ ES + AG+RR Sbjct: 627 GAIALFSEKYENKVRVLSLGE------SKELCGGTHVNNSAEIGSFFILKESGVSAGVRR 680 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A ++ ++L+SL LK + +++ + ++ E KL+ N Sbjct: 681 IEAVVSKAAHAYAKNALKELESLKIELKNN--DLLSGISKLKNEISKLKNELKN----SN 734 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +L I V I D +K+++D + + + +I+L+ KE K S+ V Sbjct: 735 QNELKSENIKGVQICIAKIENGD---IKAMIDHFKNQFEKAVILLI-QEKEGKISLAAGV 790 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A +L + A +L GG GGG+ A +GG + K D+A+ SF++K Sbjct: 791 KNAP---LKAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842 >gi|146296899|ref|YP_001180670.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|205830010|sp|A4XKP4|SYA_CALS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145410475|gb|ABP67479.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 881 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 346/909 (38%), Positives = 518/909 (56%), Gaps = 50/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + + Sbjct: 3 MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+D VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L Sbjct: 63 TTCQKCIRT----PDIDKVGKTARHATFFEMLGNFSFGDYFKKEAITWAWEFVTEILKLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EAF++W K GL +I R+ DNFW + TGPCGPCSEI+FD+G Sbjct: 119 KERLWVTIYEEDDEAFEIWHKEVGLEEGRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGV 177 Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G + +RY+E WNLVF QF++ L +IDTGMGLER+A ++Q Sbjct: 178 DKGCGKETCGIGCDCDRYVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQG 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID+ K + ++TG +Y + V+ RVI DH+R + F+I DGILP+NEGR Sbjct: 238 VDSLFDIDIVKAIRDKICEITGCEYGKDSEKDVSIRVITDHIRGTVFMIGDGILPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG E + ++ + S YPELIQ I++ L +E+ R Sbjct: 298 GYVLRRLIRRAARHGRMLGKRETFLHLIVDTVIEAYKSPYPELIQKGEYIKKVLYNEESR 357 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GL LL+ + L K+ +L G++AFKLYDT+G PLD+ ++I +G+ +D Sbjct: 358 FNQTIDIGLELLENEIDRLKKNKENVLKGEIAFKLYDTYGFPLDLTREIAAEKGII-VDQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ ++EQ+ RAR L + + I +++++ T F+GYD L Sbjct: 417 AGFDRLMQEQKERARMAQKELENIGWKDINITIEDEV-ETVFVGYDTLE----------- 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V I + V A G ++ D+TPFYAE+GGQ+ D G Sbjct: 465 ------------TQSRVLKIFSNDDEVSYAKEGDICYIILDKTPFYAESGGQVADKGVLE 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +G ++ DV+K +G +H A V +G + + ++ ++ R NH+ATHLLH Sbjct: 513 TEGGVAEVLDVKKGPKGTILHKAKVIKGEIAVDNNIFAKVNKNLRLATMKNHTATHLLHS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 +L ILG H +Q+GS + P+ LRFD H +P++ ++ IE VNDII Q +PV + Sbjct: 573 SLRRILGEHATQSGSLVEPERLRFDFAHFEPLSEEQIVEIEKMVNDIIQQAIPVEKIQTD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + AI GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS Sbjct: 633 LDSAIKMGATALFDEKYSNIVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG + ++ + LK + + LK + +V ++ ++ E L+ Sbjct: 688 VAAGVRRIEAITGNKVYEFMLNNQKVLKDIRNKLKANSDSEIVAKINQLEERITALEKEL 747 Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL L +LS +I + + + D+ ++ + D +++K S I+L Sbjct: 748 EKHKLLLVDNELSLLYNEGLQIGEFRLIINKKETHDTDYIRLLTDRVREK-DSKAIVLNL 806 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I ++KKA VL+ +++ + + + + +VL GG GGGRP AQ GG D A Sbjct: 807 IKQDKKAIVLMACSKEAVKKGIDCGKTVKDVCEVL-GGKGGGRPDFAQGGGNKIENLDLA 865 Query: 889 IAGVASFLK 897 +K Sbjct: 866 AQRAIELIK 874 >gi|118444620|ref|YP_878353.1| alanyl-tRNA synthetase [Clostridium novyi NT] gi|205830036|sp|A0Q151|SYA_CLONN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118135076|gb|ABK62120.1| alanyl-tRNA synthetase [Clostridium novyi NT] Length = 879 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 344/908 (37%), Positives = 513/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEM+GNFSFG YFK I AW+ T+ L Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179 + +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D Sbjct: 120 KEKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ + KY + V+ R+I DH+RS S +I+D +LP+NEGR Sbjct: 239 VETIFEVDTIKSILDKVAALANTKYGEDELKDVSLRIITDHVRSVSVMISDEVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG + ++ ++ G AYPEL + K I++ + E+ER Sbjct: 299 GYVLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKDYIKKVISIEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L + L K+ +L+G+ FKLYDT+G PL++ ++IL +G+ +D+ Sbjct: 359 FAETIDSGMEILKEYIEDLEKNNKKVLSGEKVFKLYDTYGFPLELTEEILEEKGIT-VDM 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 SFN+ ++EQR RARA T+ T F GY+ L Sbjct: 418 DSFNKEMKEQRERARAARSESTYMGTDVKILDTIPSEIETTFDGYENLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + S VK I++ + G+K +V D+TPFYAE GGQ+GD G Sbjct: 467 ------------LQSKVKVIIKDDAFADCINKGEKGIIVTDRTPFYAEMGGQIGDKGTIS 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG ++ D + G VH V G ++ E ++L +D + R + NHSATHLLH Sbjct: 515 ADGFMAKVQDCKNNIGGKIVHFVEVTEGSIKLEDEVLLEVDRKRRENIGKNHSATHLLHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + D LRFD TH + +T ELK +ED VND I VVT+ M Sbjct: 575 ALRKVVGEHVHQSGSYVDEDKLRFDFTHFESLTHEELKKVEDLVNDTIESVWDVVTKEMT 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A SGA AL KY D+VRVV + G S+ LCGGTH+S+ G+I L IVSES Sbjct: 635 IEEAKNSGAMALFDEKYGDKVRVVKM-----GDFSTELCGGTHISNVGKIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG RRIEA+TG +A + + + L+ +AS LK S+ +++ R+ + E + + Sbjct: 690 IAAGTRRIEAVTGHKALEFIEHKSDLLRQIASMLKCSEKDIINRLNQQNAELKDKDKEIS 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + ++ V + +VD + L+++ D ++ KI+SG+++L G Sbjct: 750 ALKSKLASGSEDDILKNIKEVKGVKLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GS 808 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K + + ++D++ + + R AK+ GGGG GGRP MAQ+GG K + AI Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLNDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 NEVENIME 875 >gi|295094821|emb|CBK83912.1| alanyl-tRNA synthetase [Coprococcus sp. ART55/1] Length = 887 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 338/901 (37%), Positives = 496/901 (55%), Gaps = 40/901 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEF + GH + S SLIP ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G+ AD+I R DNFW GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVDADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ G++Y + V+ R+I DH+RS +F+ +DGI+P+NEGRGY Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + AYPEL + K I + E+E F Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELSEKKEYIFNKIDKEEESFN 360 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D GL +L + +++L+GD AFKLYDT+G PLD+ ++IL G +D Sbjct: 361 KTIDTGLAILKDYIDETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEILEEEG-IEVDEDR 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + + Q+ AR + + ++F+GYD L + + Sbjct: 420 FTECMNIQKETARKARKTTTYMGADATVYEQLPVDMTSEFVGYDKLTYKSTISAITTEVG 479 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + ++ + + G + V+ +TPFYA GGQ+GD G + Sbjct: 480 EGDD---------------KKSVLADTVSEGAQASVIVPETPFYATMGGQIGDKGIIKTE 524 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + D K G H VE G L LT+D +NR + NHSATHLL AL Sbjct: 525 NGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQRAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + P LRFD +H + +T E+K +ED VN+ I ++PV T +M+ + Sbjct: 585 KMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDIPVCTDVMSVD 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY ++VRVVS+ G S LCGGTHV+STG I I+SE+ + Sbjct: 645 EAKETGAMALFGEKYGEKVRVVSM-----GDFSKELCGGTHVASTGAIKTFKIISEAGVA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG RRIEA+T A + +++L A K V R+E++ E ++L + K Sbjct: 700 AGTRRIEALTSVGALDYYRNVEQELMDAAKAAKTDIYGVASRIEQLLAEVKELTNENKKL 759 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ E S + ++ I + D L+++ D + K+ +++L K Sbjct: 760 KDKMAKEAAGDVLSSAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSVVVLASA-K 818 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ + T+ + +A ++ + A ++GGGG GGRP+MAQ+GG N + + A+A Sbjct: 819 DGKVNLIAMATDGAVAKGAHAGNIIKAVAGLVGGGG-GGRPNMAQAGGKNPDGIEAALAQ 877 Query: 892 V 892 Sbjct: 878 A 878 >gi|290961838|ref|YP_003493020.1| alanine tRNA synthetase [Streptomyces scabiei 87.22] gi|260651364|emb|CBG74486.1| alanine tRNA synthetase [Streptomyces scabiei 87.22] Length = 890 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 335/924 (36%), Positives = 510/924 (55%), Gaps = 64/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGEVKPSFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQHAWELLTSPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY +D+EA ++W + G+ ++I R+ DN+WSM GPCGPCSEI Sbjct: 116 GYGLEPEKLWITVYKDDDEAERIWHEQIGVPKERIQRLGKKDNYWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKEDFEILGELPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I + ++TG++Y + V+ RV+ DH+R++ LI D Sbjct: 235 ERLAMILQGVQNLYEIDTSMAVIDKATEITGVRYGDAHASDVSLRVVTDHIRTAVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLIDVVIGMMGQQYPELVTDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +LD ++ + ++L+GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKQAGGQVLSGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + G T+FIGY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADARAKKTGHADLGAYREIADAAGETEFIGYSDTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V I+ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTVVGILVDGLSSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + G ++I D QK G++VH +V+ G + +ID + R ++ Sbjct: 511 GQIGDTGRIRVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDGRRRTAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V I++ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVHAEILSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + K + + ++ S ++ V ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVSGVAVVTGQVPDGTTADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 +IQ G ++ L K +I E +R A DL R +AK LGGGG GG+P + Sbjct: 806 RIQGGRAAVVALFTAVN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ GG N +A+ V + + Sbjct: 864 AQGGGQNPAAIGEAVDAVERLVAE 887 >gi|168186831|ref|ZP_02621466.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund] gi|169295233|gb|EDS77366.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund] Length = 879 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 342/908 (37%), Positives = 517/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEM+GNFSFG YFK I AW+ T+ L Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179 + +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D Sbjct: 120 KDKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ + +Y + V+ R+I DH+RS S +I+D +LP+NEGR Sbjct: 239 VETIFEVDTIKSILDKVATLANTEYGKDEIKDVSLRIITDHVRSVSVMISDEVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG + ++ ++ G AYPEL + K I++ + E+ER Sbjct: 299 GYVLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKEYIKKVISIEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L + +L ++L+G+ FKLYDT+G PL++ ++IL +G+ +D+ Sbjct: 359 FAETIDSGMEILKQYIENLEENNQKVLSGEKVFKLYDTYGFPLELTEEILEEKGII-VDM 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RARA T+ T F GY+ L Sbjct: 418 DGFNKEMKEQRERARAARSESTYMGTDVKILDTIPSEIETVFDGYENLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + S VK I++ + V+ G+K +V ++TPFYAE GGQ+GD G Sbjct: 467 ------------LQSKVKIIIKDDDFVDCIKKGEKGIIVTERTPFYAEMGGQIGDRGTIS 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG ++ D + G VH V G ++ E ++L +D + R + NHSATHLLH Sbjct: 515 ADGFIAKVQDCKNNIGGKIVHFVEVIEGNIKLEDEVLLEVDRRRRENVGKNHSATHLLHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + D LRFD TH + +T ELK +ED VN+ I VVT+ M+ Sbjct: 575 ALRKVIGEHVHQSGSYVDEDKLRFDFTHFESLTDEELKEVEDLVNNTIENVYDVVTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A SGA AL KY DRVRVV + G S+ LCGGTH+S+ G+I L IVSES Sbjct: 635 IEEARNSGAMALFDEKYGDRVRVVKM-----GEFSTELCGGTHISNVGKIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG RRIEA+TG +A + + + L+ +++ LK S+ +++ R+ + E + + Sbjct: 690 IAAGTRRIEAVTGHKALEFIEHKSDLLRQISNMLKCSEKDIINRLNQQSAELKDKDKEIS 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + +I VN + +VD + L+++ D ++ KI+SG+++L G Sbjct: 750 VLKSKLASGSEDDILKNVKEIKGVNLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GS 808 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K + + ++D + R + ++ R AK+ GGGG GGRP MAQ+GG K + AI Sbjct: 809 EVEGKVQFIAMASKDAVSRGVHCGNIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLNDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 NEVENIME 875 >gi|186681072|ref|YP_001864268.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102] gi|205830164|sp|B2J876|SYA_NOSP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|186463524|gb|ACC79325.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102] Length = 880 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 333/906 (36%), Positives = 503/906 (55%), Gaps = 49/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR TFL FF + H++LPS+SL+P DPT++ T +GM+PFK IF GQ P ++ T Sbjct: 9 SGNEIRNTFLNFFAQRSHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F Sbjct: 68 TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGFSP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+++D+EAF +W+ G+ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 124 QNLVVSVFEDDDEAFAIWRDQIGVPVARIKRLGEDDNFWVSGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ N Sbjct: 184 -RGDENIDLEDDSRFIEFYNLVFMQYNRDVLGNLTPLQNKNIDTGMGLERMAQILQKVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ + Q+ G+ Y ++ + +VI DH+RS +IAD I +N GRGY Sbjct: 243 NYETDLIFPIIQTAAQIAGIDYHSSDEKTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + + SAYP + Q + I+ L+ E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFTTQVAESAIALSESAYPNVRQREAAIKAELQREESNFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TLDRG LL+ ++ + + ++G+ AF LYDT+G PL++ Q++ L +D Sbjct: 363 RTLDRGEKLLEEIIQEVKQQGSTQISGESAFTLYDTYGFPLELTQEVAEENNLT-VDAEG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +E Q+ R R + T + L E T+F+GY Sbjct: 422 FEAQMEIQKGRGRDAHETIDL-TVQGSLDKLAEHIQVTEFLGYTQ--------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + ++I++AI+ +G EEA +G +V++V D+TPFYAE+GGQ+GD G G Sbjct: 466 --------SAATAIIEAILLEGVSQEEAEAGTQVQIVLDKTPFYAESGGQIGDRGYISG- 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + KK FVH +ERG LR + ID RR+ NH+ATHLL AL Sbjct: 517 DGIVVRVEDVKKESDFFVHFGRIERGTLRVGDRVTAQIDPACRRRAQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+ +SQ GS ++ D LRFD + +T+ E++ +E+ VN IA+ ++ Sbjct: 577 KKIVDDGISQAGSLVSFDRLRFDFNCPRALTAEEVQQVEEQVNSWIAEAHAAKVEVLPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY D VRV+ S LCGGTHVS+T EI + I+SE+ + Sbjct: 637 EAKAKGAVAMFGEKYGDEVRVIDFPN-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R Q Sbjct: 692 SGVRRIEAVSGPAILDYLNLRDKVVKDLSDRFKVKPEELPDRITSLQSELRNSQKELETL 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K+QL + + D + + VD + LK+ + L +KI +G ++L + + Sbjct: 752 KVQLAIAKSDSLLQTAETVGDHKIIVAQLENVDPESLKTAAERLLQKIGNGAVVLGSVPE 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K A+ Sbjct: 812 ADKVSIVAAFSPEVNKKGLQAGKFVGAIAKICGGGG-GGRPNLAQAGGRDASKLPDALGQ 870 Query: 892 VASFLK 897 S LK Sbjct: 871 AESDLK 876 >gi|282866222|ref|ZP_06275269.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE] gi|282559006|gb|EFB64561.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE] Length = 889 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 335/923 (36%), Positives = 504/923 (54%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP V Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+ LT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQFAWEALTNSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL+ITVY +D+EA ++W++ G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GFGLDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKDDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG++Y + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAEHGSDVSLRVVADHIRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T ++ L+ + MG YPEL+ + +E Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGQVVKDLVDVVIDTMGQQYPELVTDRKRVE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +LD +S ++L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVSETKATGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + G T+F GY +G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADNSGLTEFTGYTSTQG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G +Q+ DVQ+ G+ VH V+ G + S++ ID RR ++ Sbjct: 511 GQLADQGRIRLDTGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGSSVLAAIDTTRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ +DA GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L LK + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLKGRPEELPEKISGML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + + K + + ++ + DV ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLVESAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++Q G ++ L + + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RVQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N + A+A V + + Sbjct: 865 QGGGQNPDAIGDAVAAVERLVTE 887 >gi|296185456|ref|ZP_06853866.1| alanine--tRNA ligase [Clostridium carboxidivorans P7] gi|296050290|gb|EFG89714.1| alanine--tRNA ligase [Clostridium carboxidivorans P7] Length = 879 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 330/912 (36%), Positives = 512/912 (56%), Gaps = 50/912 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ +R +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P Sbjct: 1 MKKIGLNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VTT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFKE AI AW+ T+ Sbjct: 61 TRVTTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L + +LY+T+Y +D+EA LW K + + +I R+ +DNFW GPCGPCSEI FD Sbjct: 117 KLPKDKLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHG-IGPCGPCSEIHFD 175 Query: 179 QGECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +G + + +R +E WNLVF QF++ L +IDTGMGLER+AT+ Sbjct: 176 RGNEKINTVEEFLKAADEDRVVEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATI 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q + +++D + ++ +V ++Y + ++ RVI DH+RS SF+I+DGILP+N Sbjct: 236 MQGTNSIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVITDHVRSVSFMISDGILPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + + LG + L + Y EL + + I++ ++ E Sbjct: 296 EGRGYVLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGNYAELAEKRDYIKKVIKLE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T+D G+ +L+ + +L + IL+G+ AFKLYDT+G P+++ ++IL + + Sbjct: 356 EERFDETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTYGFPIELTEEILEEKDMK- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ FN+ ++ QR RARA E + T+F GYD L Sbjct: 415 VDLEGFNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIETKFNGYDTL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S VK +++ E V V G K +V + TPFYAE GGQ+GD G Sbjct: 466 --------------HTTSKVKILIKNEEFVSTMVEGDKGVIVTENTPFYAEMGGQIGDHG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + ++ D +K G +H V G + + + L ++ R + NH+ATHL Sbjct: 512 IISTDSFKAEVVDCKKNVAGKILHFVKVLSGTIGVDHQVTLNVNEARRNNIRRNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L+ AL +LG HV Q+GS + + LRFD H + + ELK +E VND I + L V T+ Sbjct: 572 LNEALRKVLGEHVHQSGSYVDDERLRFDFNHFEAPSHEELKKVEALVNDEIVKVLNVQTQ 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ E+A +GA AL KY D VRVVSV G S LCGGTHVS++GEI L I+S Sbjct: 632 SMSLEEAKETGAIALFDNKYKDEVRVVSV-----GDFSKELCGGTHVSNSGEIGLFKIIS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AGIRRIEA+TG +A +++ +++ +K + + L+ S+ ++ +++ E ++ Sbjct: 687 EAGVAAGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKLRCSEKEIIHKLDLQALELKEKDK 746 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ K +L ++ + + ++ +VD L+ + D ++ K +++L Sbjct: 747 EIAELKSKLAGSAEDEILNGFQEVKGIKLFTGVLKDVDGNALRDLADKIRNKGGECVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + E K + + T++ + + + + + A + GGGG GGRP MAQ+GG K + Sbjct: 807 GSVV-EGKVQFVSMTTKEAIAKGVHCGKIIKEVAAIAGGGG-GGRPDMAQAGGKLPEKVE 864 Query: 887 QAIAGVASFLKK 898 AI S L+K Sbjct: 865 DAIGSCVSILEK 876 >gi|23099464|ref|NP_692930.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] gi|33301696|sp|Q8EPS9|SYA_OCEIH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|22777693|dbj|BAC13965.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] Length = 879 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 333/914 (36%), Positives = 515/914 (56%), Gaps = 58/914 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR F++FF++ H + PS+SL+P DPTL++ NSG+ K F G+ P Sbjct: 1 MKSLTSAEIRQMFIDFFKEKSHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ A++ AW+ LT K Sbjct: 61 PRIVNAQKSIRT----NDIENVGYTARHHTFFEMLGNFSIGDYFKKEAMEWAWEFLTDEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D+ L +TV+ ED+EA+ +W G+ ++IIRI +NFW + E GP GP +EIF Sbjct: 117 WINFDEALLSVTVHPEDDEAYDIWLNDIGIPKERIIRI--EENFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGESYGNDPQDPELYPGGENNRYLEVWNLVFSQFNHNPDDTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 + +++Q+ N++ DLF +I+ +E+++ KY + + +VI DH+R+ SF I DG Sbjct: 234 LTSIIQQVPTNFETDLFMPIIRETERISKRKYGNSEAEDTSFKVIADHIRTVSFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRR++RRA+ +A+ LG EP M L+P + M YPE+ + I Sbjct: 294 MPSNEGRGYVLRRLIRRAIRFAKDLGVNEPFMYQLVPVVGDIMKDFYPEVQKDAGYISNV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E+ERF +TL+ GL++L ++ E+ G+ F+LYDT+G P ++ ++ + + Sbjct: 354 IKVEEERFHETLNDGLIILASIIEEERKKGSEVFPGEEVFRLYDTYGFPKELTEEYVEQQ 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G ++ +++ + +QR RAR + S + F+ E + F+GYD L+ Sbjct: 414 GFT-VNQAGYDKEMNKQRERARNARQKVDSMQVQDTIFT--EINVDSTFVGYDQLQK--- 467 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + ++A+V+ +EEA G + V +TPFYAE+GGQ+ Sbjct: 468 --------------------ETTIEALVKDKNQIEEANQGDVLYVFLKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + ++DVQK G +H ++ G + + ++ R + NH+ Sbjct: 508 ADNGWIYSENASAYVSDVQKSPNGDHIHQIEIKEGSFKINQPVHAVVERTFRNHVIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LGSHV+Q GS + P+ LRFD +H +T+ EL+ IE VN+ I ++LP Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVRPERLRFDFSHFHGVTAEELQQIELKVNEKIWESLP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V ++A A GA AL G KY D VRVV + G +S LCGG HV +T EI L Sbjct: 628 VAIDSKKIDEAKAMGAMALFGEKYGDIVRVVQI-----GDYSIELCGGCHVINTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IV E+ I AG RRIEA+T ++A +L + + L + A LK S+ + R+E + E + Sbjct: 683 KIVQETGIGAGTRRIEAVTSKQAYDYLNTKLDLLHNSAQKLKTSEEQLPERIEGLQVELK 742 Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 Q +L+ + S +I+ V ++ ++ D +L+S+MD L++K+ SG Sbjct: 743 DSQKQVDSLSAKLSNLEASSILDEVKEISGVPVLAQEVNVKDMNQLRSMMDELKQKLSSG 802 Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L K ++ VT+D L +A ++ + +A V GGGG GGRP MAQ+GG + Sbjct: 803 VILLAA-ENNGKVQLVAGVTKDMLEKNMHAGNIVKQAATVCGGGG-GGRPDMAQAGGKDP 860 Query: 883 NKADQAIAGVASFL 896 +K +A+ V ++ Sbjct: 861 SKIKEALQSVEQYI 874 >gi|57506111|ref|ZP_00372033.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195] gi|57015595|gb|EAL52387.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195] Length = 844 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 351/896 (39%), Positives = 515/896 (57%), Gaps = 58/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR FL FF GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+ T+ Sbjct: 2 DIRAQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKER 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV+++D+EA+ LW+ + + ++I R DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K +N Sbjct: 179 HSSEDYMGGDGDRFLEIWNLVFMQYERSSNGTLSPLPKPSIDTGMGLERVYAIKEGKLSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF LI + G Y + ++RVI DH+RSS+FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M L+ LC MG Y L + K I+E ++ E+ERF T++ Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEAIKEQIKLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G+ L + L+ I +G++AFKLYDT+G PLD+ QD+L +GL+ ID F + + Sbjct: 359 KGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFERLMS 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ+ RA+A G G + L E++G +F+GY Sbjct: 416 EQKERAKAAWKGSGDKVVSGDFKILLERFGKNEFVGYTQ--------------------- 454 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + ++ E+ +GQ V D+TPFYA +GGQ+GD G + I Sbjct: 455 --KACESQILALLDENFKMQEKLHNGQTGWVFLDKTPFYANSGGQVGDKGFLGENEISDT 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + I + L+ + L+ ID R Q++ +HSATHLLH+AL ILG Sbjct: 513 QKFFELNLSKITAKN------ELKLDEKLLAHIDEDKREQIARHHSATHLLHYALRKILG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 +H++Q GS + + LRFD H K +T EL+ IE+ VN++I+ + P + M+ +DA S Sbjct: 567 THIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAKKS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY +VRV+S+ S LCGGTHV+++ EI +I+ ES + AG+RR Sbjct: 627 GAIALFSEKYESKVRVLSLGE------SKELCGGTHVNNSAEIGSFFILKESGVSAGVRR 680 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A ++ ++L+SL LK + +++ + ++ E KL+ N Sbjct: 681 IEAVVSKAAHTYAKNALKELESLKIELKNN--DLLSGISKLKNEISKLKNELKN----SN 734 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +L + V + D +K+++D + + + +I+L+ KE K S+ V Sbjct: 735 QNELKSENVKGVQICIAKVENGD---IKAMIDHFKNQFEKAVILLI-QEKEGKISLAAGV 790 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A +L + A +L GG GGG+ A +GG + K D+A+ SF++K Sbjct: 791 KNAP---LKAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842 >gi|329938948|ref|ZP_08288322.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045] gi|329301833|gb|EGG45726.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045] Length = 890 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 341/923 (36%), Positives = 509/923 (55%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE A +LAW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAAKLAWELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY+ED+EA ++W+ I G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLEAEKLWITVYEEDDEAERIWRDIVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEDFEILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I + ++TG+ Y + + RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNLYEIDTSMAVIGKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVETVIATMGQQYPELVTDRERIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ RF KTL+ G +LD + + +L GD AF L+DT G P+D+ ++ Sbjct: 355 KVALAEEARFLKTLNAGTNVLDTAVTETKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A +L +G + + + + GAT FIGY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADALAKKTGHADLGAYREIADSAGATDFIGYTETEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V I+ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTVVGILVDGLSSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG G ++I D QK G++VH +V+ G + +ID + R+ ++ Sbjct: 511 GQIGDTGRIRTDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGARAQASIDDRRRKAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A S L + + L +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVHQLTELVKGRPEELPEKVAGML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + K + + ++ DV ++ + + +L+ ++ ++ Sbjct: 746 ARLKDAEKEIEKFRAEKVLQAAGGLAASAKDVRGLALVTGQVPDGTSADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ G ++ L ++ + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGGRAAVVALFAVNNGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N +A+ V + + Sbjct: 865 QGGGQNPAAVGEAVDAVERLVAE 887 >gi|253681881|ref|ZP_04862678.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873] gi|253561593|gb|EES91045.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873] Length = 879 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 334/908 (36%), Positives = 505/908 (55%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179 + +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D Sbjct: 120 KDKLYVTIYLDDDEAYDIWTTKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 179 GEIKSVEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D + ++ + Y + ++ R+I DH+RS S +I+D +LP+NEGR Sbjct: 239 VETIFEVDTIRSILDKVANLANTTYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ ++ G AYPEL + K I++ + E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGIQGTFLHKIVNSVIENSGDAYPELKEKKDYIKKVISIEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L + L +L+G+ FKLYDT+G PL++ ++IL + + +D+ Sbjct: 359 FAETIDSGMEILKEYIEELEKENKNVLSGEKVFKLYDTYGFPLELTEEILEEKNIT-VDM 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++ QR RARA T+ T+F GY L Sbjct: 418 DGFNEEMKVQRERARAARSESTYMGTDVKVIDTIPSEIETKFDGYKNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + S +K I++ + + +G+K +V D+TPFYAE GGQ+GD G Sbjct: 467 ------------LQSKIKVIIKNDDFADCIKAGEKGIIVTDKTPFYAEMGGQIGDKGTIS 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG ++ + + G +H V G ++ ++L +D R +S NHS THLLH Sbjct: 515 ADGFVAKVENCKNNIGGKIIHFVEVIEGNIKLGDEVLLEVDRVRRDNVSKNHSTTHLLHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q+GS + D LRFD TH + +T EL +ED VN+II++ V T M Sbjct: 575 ALREVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNNIISKVYEVETNEMT 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A SGA AL KY D+VRVV + G S LCGGTH+S+ G+I L IVSES Sbjct: 635 IEEARQSGAMALFDEKYGDKVRVVKI-----GNFSVELCGGTHISNIGKIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AGIRRIEA+TG +A + + LK +A LK S+ +++ R+ + E ++ + A Sbjct: 690 IAAGIRRIEAVTGTKALEFIKDKSNLLKEVAELLKCSEKDILNRLNQQSLELKEKEKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + +I V + +VD + L+++ D ++ K+ SG+++L G Sbjct: 750 SLKSKLASGSEDEILNNVKEIKGVKLAVANLKDVDGEALRNLGDKIKNKLGSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K + + ++D++ + + R AK+ GGGG GGRP MAQ+GG K A+ Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLKDAM 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 NAVENIME 875 >gi|227505016|ref|ZP_03935065.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] gi|227198380|gb|EEI78428.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] Length = 895 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 327/929 (35%), Positives = 492/929 (52%), Gaps = 67/929 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F + F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MKTHEIRERFTQHFVKTGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT Sbjct: 60 LATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWSLLTGSVE 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD RL++TVY +D+EA +W + G+ ++I R+ DN+WSM GPCGPCSE Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAADIWHEQVGVPRERIQRLGMEDNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228 I++D+G G G + RY+EIWNLVFMQ E+ + LPK +IDTG+ Sbjct: 176 IYYDRGPEY-GAEGGPVADDNRYMEIWNLVFMQNERGEGIGKGNFEILGPLPKKNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284 G+ER+A +LQ N Y+ DL + +I A+E++TG KY + + RVI DH R+ Sbjct: 235 GIERVACILQGVDNVYETDLLRPVIDAAEELTGAKYGEGASDQDNIRFRVIADHSRTGMM 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P NEGRGY+LRR++RR + ARLLG T P M + + M +YPE+ + Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSARLLGATAPSMERFMNTIMDTMTPSYPEIADNR 354 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG------KDEILNGDVAFKLYDTHGLPL 398 I +E++ F KTL+ G L D + L +IL+G+ AF+L+DT+G P+ Sbjct: 355 ERILRVAIAEEKAFLKTLESGTKLFDEAVEALKSTSRAATPKILSGEKAFELHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ GL +D+ FN+A+ EQR RA+A + G + + T F Sbjct: 415 DLTLEMAQEAGLE-VDMDGFNEAMGEQRRRAKADNQAKKHGHADLSLYREWVDNNPTVFT 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY+ L + + +V+ G+ V E G++VEV+ DQ+ Sbjct: 474 GYETLTSD-----------------------AKIIGLVRDGQKVNEVHEGEQVEVILDQS 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 P YAE+GGQ D G L++ DVQK + ++VH A V G L ++ +D + Sbjct: 511 PLYAESGGQTADRGRIYAGESLLEVGDVQKIGKKLWVHKATVTAGGLDLGSTVTAEVDQK 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R HSATHL+H AL +LG Q GS P LRFD +++ ++ A+L+ I Sbjct: 571 WRHGAVQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSPAQLEEIALI 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N + + V T + E A GA AL G Y +VRVV + GG S LCGGTH Sbjct: 631 TNQAVDAHFAVNTIETSLEQAKQMGAMALFGENYGSQVRVVEM----GGPFSIELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V++T EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LK+ ++ Sbjct: 687 VANTSEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGISRELKIQSEDLPE 746 Query: 759 RVEEIWEEYRKLQLIHAKR-KLQLNVEDLS----CHKIADVNFMSHIIS-EVDSKELKSV 812 R+ ++ E+ + + + K QL + + +S + V +L+++ Sbjct: 747 RIAQLTEKLKAAEKQIDELHKAQLMAQTADMIGGAITVNGFAVVSVRLPNNVSGGDLRTL 806 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++ ++ G+++L ++ K ++ T+ + R A DL + + + G GG Sbjct: 807 ATDIKNRLGDEAGVVVLASENEGGKTPFIVGATKAAVARGIKAGDLVKTISGYV-DGKGG 865 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 G+P MAQ G N A + L+K Sbjct: 866 GKPDMAQGSGANAEGLQAAFNALRDELEK 894 >gi|304440318|ref|ZP_07400207.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371070|gb|EFM24687.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 874 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 338/911 (37%), Positives = 501/911 (54%), Gaps = 50/911 (5%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ IR FLEFF+ H +L S LIP D +L+ +GM P K FTG+ P Sbjct: 1 MKNLGLHEIRKEFLEFFKSKDHLILKSFPLIPKQDKSLLLIGAGMAPMKKYFTGELTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V+T QKC+R G D++NVG T+RH TFFEMLGNFSFG YFK AI AW+ LT+ Sbjct: 61 KRVSTCQKCIRTG----DIENVGLTDRHATFFEMLGNFSFGDYFKHEAISWAWEFLTEHL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L + +L++TV+ EDEEA+K+W+ + ++I+++ DNFW + E GP GPCSEI+ D Sbjct: 117 ELPKDKLWVTVFYEDEEAYKIWRDEIHIPEERIVKMGKEDNFWEL-EVGPSGPCSEIYVD 175 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P E +R+IE+WNLVF QF++ L +IDTGMGLER+ATV Sbjct: 176 RGEEYGCGDPDCKPGCECDRFIEVWNLVFTQFDKDEAGVYHPLAHPNIDTGMGLERIATV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N ++ID K++I+ E+++ KY+ +N ++ RVI DH R+ +F+I+D + P+N Sbjct: 236 LQNTNNIFEIDAIKNIIEKIEELSNYKYKTDNKKDISVRVITDHARAMTFMISDTVRPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + + + Y +L + + I+E +R E Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIKRAFLSEIADLIIDSWSVEYDDLKENREKIKEVIRIE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F +T+D+G+ +L+ L L K+ +L GD AFKLYDT+G P+D+ +IL G Sbjct: 356 EEKFLETIDQGMNILNSYLEELDKENTKVLPGDKAFKLYDTYGFPIDLTIEILEDSGYE- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++ +EEQR RAR G T K E T+F GY Sbjct: 415 VDRKGFDENMEEQRRRARESRDHDQIGWTSKESEHYYEDLN-TEFTGYSDDESD------ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + IV GE+V+ A GQ+ V D+TPFY E GGQ+GD G Sbjct: 468 -----------------SKIVRIVLNGEVVDSACEGQRAIFVLDKTPFYGEGGGQVGDIG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + I D +K ++GI + V GI + + ID + R + NHS THL Sbjct: 511 TVTSDNFEIDIIDTKKTSKGIVLMIGDVTAGIAKVGSDVHTEIDVERRNNIRRNHSVTHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + D +RFD TH + I+ +LK IE+ VN I + LPV T Sbjct: 571 LHKALKEVLGNHVNQAGSLVRDDYMRFDFTHFEAISQEDLKKIEEIVNKEIFRALPVETI 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 I N ++A GA L KY D VRVV + G S LCGGTHV +T EI + I+ Sbjct: 631 ITNPKEAAELGAVGLFEEKYGDIVRVVKM-----GDFSIELCGGTHVKNTSEIGMFKILQ 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I +G+RR+E ITG +L E++ ++ +K ++ + ++E E ++ Q Sbjct: 686 EGGISSGVRRVECITGPAVYKYLNENIEQIDRISKLVKANKSEIEHKIETTQNELKEAQK 745 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ +I + + +D L+ + D ++ K+ S +++ Sbjct: 746 EIEIIKKDKAKSEVDNVLDTKFEIDGGFGLVYKFENMDVSTLRDLADTVKDKLGSAVVV- 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 E K + + + ++ ++NA + R AK+ GG GGGRP MA +G + K D+ Sbjct: 805 FSTVNEGKLNFVAAASNEISKKYNAGSIVREVAKIC-GGSGGGRPTMATAGASDLTKVDE 863 Query: 888 AIAGVASFLKK 898 A+ L + Sbjct: 864 ALNFAKKLLTE 874 >gi|310829304|ref|YP_003961661.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612] gi|308741038|gb|ADO38698.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612] Length = 879 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 334/906 (36%), Positives = 511/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL FF+ GH L S L+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 6 LNEIREKFLAFFESKGHLRLKSFPLVPINDKSLLLINSGMAPMKPYFTGDEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ T+ ++D Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFCTEVMEMDPE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 ++Y+++Y +DEEA +W G+ ++I+R+ DNFW GPCGPCSE+++D+GE Sbjct: 122 KIYVSIYLDDEEAHDIWHDEIGVPEERIVRLGKEDNFWEHG-LGPCGPCSELYYDRGEEY 180 Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+E WNLVF QF++ + L +IDTGMGLER+AT++Q Sbjct: 181 GCGSPDCAPGCECDRYVEFWNLVFTQFDKDEEGNYNPLANPNIDTGMGLERLATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N ++ID H++ + G+KY + V+ RVI DH+RS +F+IADG++P NEGRGY Sbjct: 241 NIFEIDTIGHILNYICKKAGVKYGENAQDDVSIRVITDHVRSVTFMIADGVMPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG E + + + AYPEL + + I++ +R E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGMQELFLYDVAKEVVRVSADAYPELAEKQDYIQKLIRIEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GL LL+ L L ++++ G AFKLYDT+G P D+ ++I+ RGL + Sbjct: 361 ETIDQGLSLLEKELDSLIEQEEKVFPGQGAFKLYDTYGFPYDLTKEIVEERGLT-LIASE 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A++EQR RAR F+ +F+GY+ L Sbjct: 420 FEEAMQEQRERARKARAESELAVWADDPFNPLGPDALVEFVGYENLE------------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + ++ E+V E +G+ V V+ D+T FYAE+GGQ+GD G + Sbjct: 467 ----------ANGKIIGLISGEELVSEVHAGEDVLVLLDKTSFYAESGGQVGDKGQIVSG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +++TD +K + +H+ V G + + ++ + R NH++THLL AL Sbjct: 517 DRVIEVTDCKKGSLSRHIHYGKVVSGTFKMGEEVTTKVNRELRAATQRNHTSTHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS ++PD LRFD H +P+T E + +E+ VN I + + V + + Sbjct: 577 KQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTHEEKRQVEEIVNKAILEAMDVAIFETSID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA + GA AL G KY + VRVV V G S LCGG H++++ ++ + I+SE+ + Sbjct: 637 DARSMGAMALFGEKYGEVVRVVKV-----GDFSIELCGGCHITNSAQVGMFKILSETGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA TG A H+ D+ L A LK + +++ +V E+ E+ + + + + Sbjct: 692 AGIRRIEAATGMNAVHHVEQMDDTLLETAEALKTNPDHLLEKVTELAEQSKHKEKVINEL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K + + I V + VD +EL+++ D L+ ++ SGI++L G Sbjct: 752 KHKFAGNMVMDIHQKVTVIDGVQTTIAEVEGVDMEELRNISDMLKDRMGSGIVLL-GTRG 810 Query: 833 EKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 ++K + + T+D L F+A L + A++ GGGG GGRP MAQ+GG K +A+ Sbjct: 811 KEKVNFIATATKDILNKGFHAGKLIKEVAQIAGGGG-GGRPDMAQAGGKKPEKLGEALEK 869 Query: 892 VASFLK 897 +K Sbjct: 870 AKEIIK 875 >gi|195953907|ref|YP_002122197.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933519|gb|ACG58219.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 856 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 322/903 (35%), Positives = 503/903 (55%), Gaps = 53/903 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL FF+ GH ++ SSS++P +DPTL+F N+GMVPFKN+F G E Y+ Sbjct: 1 MKTDEIREKFLSFFENKGHTVVKSSSIVPKSDPTLLFVNAGMVPFKNVFLGLESLPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKC R GKHNDL++VGRT RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ L Sbjct: 61 TSCQKCFRVSGKHNDLESVGRTTRHHTFFEMLGNFSFGDYFKKEAILYAWEFVTEVLRLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + ++Y++V+ D+EA+ +WK + + DKI R+ DNFW M ETGPCG SEI+ D+GE Sbjct: 121 KDKIYVSVHQNDQEAYDIWKDMVKVPEDKIWRMGDEDNFWQMGETGPCGYSSEIYIDRGE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 ERY+EIWNLVFMQF + L K SIDTGMGLER+A+V+Q K Sbjct: 181 KYSQ--------DERYLEIWNLVFMQFNKDESGHMEPLAKPSIDTGMGLERIASVIQGKD 232 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +N++ID+ +I E ++ +Y+ + + RVI DH R+ + I++GI+P+NEGRGY Sbjct: 233 SNFEIDIIMPIIHFVEDLSSKRYKTDEETDIAMRVIADHSRACTVAISEGIIPSNEGRGY 292 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 V+R+++RRA+ + +G E + + + + +AYPEL +K ++ +++E+ RF Sbjct: 293 VVRKVLRRAVRFGYKIGIKEEFLYKSIDVVVDTLKNAYPELEMSKEFVKNIIKAEESRFL 352 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+ L L D ++ K +++GD FK YDT+G PLDI+Q++ +G+ +D+ F Sbjct: 353 ETLENSLELFDRYIAE-NKSNVISGDFIFKAYDTYGFPLDILQEMTHEKGMT-LDMKGFY 410 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + LE+Q+ +R H ++++ S+K+K + F GY Sbjct: 411 ELLEKQKEESRKHFK--SEEKVDEVYLSIKDK-ARSIFTGYTHTE--------------- 452 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + V I++ G++ EE + ++ ++TPFY E GGQ+GD+G Sbjct: 453 --------EQAKVLFIIKDGKMTEELKEQEDGIIILNKTPFYPEKGGQIGDSGILENSEA 504 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D + +G+ H V +G LR ++ ID + R + +H++THLLH AL Sbjct: 505 LFIVNDTKTPTDGVIAHIGKVIKGRLRVGTDVLAKIDKERREDIKRHHTSTHLLHAALRN 564 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 + G V Q GS + + LRFD T + + EL+++E +N+ I +N + + + ++A Sbjct: 565 MFGESVRQAGSYVGDEFLRFDFTFYRSLKPEELEALEAMINEEIMKNEEIFVKELPYQEA 624 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I +GA A+ KY D VRV+S G S LCGGTHV TG+I ++SESS+ AG Sbjct: 625 IKTGAIAIFEEKYGDVVRVIS-----AGDFSKELCGGTHVKRTGDIGYFKLISESSVGAG 679 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRI A G++A + LK++ + ++ N++ RV + EE ++ K Sbjct: 680 IRRIIAKAGRKAVREAYEDSKLLKTIYQEIGANKQNLLERVIALKEELKEKDNQIQMLKS 739 Query: 780 QL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 +L L+ +I + I+ E L+ + D+ + + + ++ LV S K Sbjct: 740 KLVRLEAKASLNIEQINGIKLYWGILEEASLDNLREIADSYR-QHPNTVVFLVSKSP--K 796 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+LI ++DL A + + AK + G GGGR +AQ G + A+ + S Sbjct: 797 KSILIARSKDLNYDMKA--IIKDIAKPME-GSGGGREDLAQGGVQKIETFNSALEVLKSI 853 Query: 896 LKK 898 L K Sbjct: 854 LSK 856 >gi|219847052|ref|YP_002461485.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] gi|219541311|gb|ACL23049.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] Length = 894 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 356/920 (38%), Positives = 510/920 (55%), Gaps = 57/920 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TF+ FF+++GH +PSSSL+ +DPTL+F NSGMV FK++F G+E+ Y Sbjct: 5 TAAQIRETFISFFKRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYTRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI+LAW LLT+EF L Sbjct: 65 TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIRLAWKLLTEEFQLPV 124 Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL+ TV+ D+EA LW G +++R DNFW M +TGPCGPCSEI Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIAQ-GADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G+ + G + + Y+EIWN VFMQ+++ LP+ S+DTGMGLERMA Sbjct: 184 IYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q + YD DLF +I V G + + +R I DH R+ +FLIADG+LP Sbjct: 241 VMQGVHSTYDTDLFVSIINRIIAVRGSDEEHYQAHRSAYRAIADHSRAIAFLIADGVLPG 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GR YVLRRI+RRA R +G+ P + ++ + +MG YPEL+ + LI Sbjct: 301 NLGRPYVLRRILRRAAYQGRTIGFERPFLAEVITTVIDQMGEVYPELVNRRELILSAADQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ +F +TL GL L+ V+ + ++ G AF L DT+G PLD+ Q I +GL Sbjct: 361 EERQFLRTLSGGLSRLNAVIEQVRTRGETVIPGTDAFVLKDTYGFPLDLTQKIAAEQGLT 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + A+ EQR+R+RA + G G + +W L A+ F GY+ L Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAAGKRGGEAD-LWAEL--DLPASHFTGYERLSDR----- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V ++ G+ + A+ G++V++V D TPFYAE+GGQ+GDT Sbjct: 472 ------------------ATVIGMLADGDAITSAMVGRQVQIVLDTTPFYAESGGQVGDT 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +G +QI D ++ G+ VH+ V G + + T+D R + NH+ATH Sbjct: 514 GVLVGPEGSVQIEDTRRPLPGLIVHYGRVVSGTIHVGDQVQATVDMVRRADIQRNHTATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L AL +LG H +Q GS + PD LRFD TH+KP+ EL+ IE +N + + V Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKPLDPEELREIERRLNAWVRADASVRW 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGE 704 I AIA GA AL G KY D VRVV++E E S LCGGTHV+ TGE Sbjct: 634 EITGYRSAIARGAIALFGEKYGDTVRVVTIERGTGIENGEYASRDSLELCGGTHVNRTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I+ E SI +GIRR+EA+TG+ A Q + L+ LA+ + ++ R+E + Sbjct: 694 IGFVRILGEGSIGSGIRRVEALTGRGAELWAEEQAQTLRDLAARINAQPAQLIERIEALL 753 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E R+ + + +L E L +A + ++ + + L+ + + L+ K Sbjct: 754 AENRQRRQELEALRSKLAREMLDTLVHRTQTVAGIPLLAAEVEADSVERLREMGEYLRDK 813 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + S +I+L G K +L +VT DL+ R NAV + + A ++GGGG GGRP +AQ+G Sbjct: 814 LGSAVIVL-GAQINGKPQLLTIVTSDLVKRGLNAVHIVKPLAAIVGGGG-GGRPEIAQAG 871 Query: 879 GPNGNKADQAIAGVASFLKK 898 G ++ AI L + Sbjct: 872 GRTPDRLAAAITAAVDVLAE 891 >gi|225026503|ref|ZP_03715695.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353] gi|224956191|gb|EEG37400.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353] Length = 867 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 325/901 (36%), Positives = 497/901 (55%), Gaps = 48/901 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT QKC+R Sbjct: 1 MYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 G D++NVG+T+RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +V Sbjct: 61 TG----DIENVGKTDRHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDADRLYPSV 116 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 Y ED+EAF +W+ G++ ++I + DNFW GPCGPCSEI++D+GE G PG Sbjct: 117 YLEDDEAFAIWRDEIGIAPERIFKFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPG 175 Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 + +RY+E+WN VF QFE L + +IDTGMGLER+A ++Q+ + +D+D Sbjct: 176 CTVGCDCDRYMEVWNNVFTQFENDGHNNYTTLKQKNIDTGMGLERLAVIVQDVGSIFDVD 235 Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 + L +V Y + ++ R+I DH+RS++F+I+DGI+P+NEGRGYVLRRI+ Sbjct: 236 TIRSLRDKICEVAKKTYKENEQDDISIRLITDHIRSATFMISDGIMPSNEGRGYVLRRII 295 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA + RLLG + L + YPEL + K I + E+ +F KT+D+G Sbjct: 296 RRAARHGRLLGIEGKFLAELSKTVIEGSKDGYPELEEKKDFIYNVIIQEEGKFNKTIDQG 355 Query: 366 LVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L + + + + L+G AFKLYDT+G PLD+ ++IL +G ++ +F + Sbjct: 356 LAILADLEESMKEKGVKELDGQDAFKLYDTYGFPLDLTKEILEEKGYT-VNEEAFQTCMN 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ+ +AR+ + + + + F+GY+ Sbjct: 415 EQKEKARSARKTTNYMGADVTVYESIDPSVTSTFVGYETQE------------------- 455 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + + E+ E GQ + D+TPFYA GGQ D+G + Sbjct: 456 ----CDSKITVMTTDTELTEALTDGQAGTIFVDETPFYATGGGQHADSGVITCKDGEFVV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DV K G H V +G+ + ++ L+++ R + HSATHLL +L T+LG+ Sbjct: 512 EDVVKMLGGKIGHIGHVTKGMFKVGDTVTLSVNKAQRADTAKGHSATHLLQKSLRTVLGN 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q+GS + D LRFD +H + +T+ EL +E VN+ IA++L V T IM+ ++A +G Sbjct: 572 HVEQSGSYVDKDRLRFDFSHFQALTAEELAEVEKMVNEKIAEDLTVSTEIMSVDEAKNTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D+VRVV++ G S C GTHV TG I I+SE+ + AGIRRI Sbjct: 632 AMALFGEKYGDKVRVVTM-----GDFSKEFCAGTHVPHTGVIKAFKIISETGVAAGIRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+TG + + +++ L A K + +++ + +E + L + K K Q+ Sbjct: 687 EALTGDGVMKYYLDEEKTLHEAAKAAKAEPHKLAEKIQSMLDEIKALSAENEKLKDQIAK 746 Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +++ + D + + +VD L+++ D L+ KI SG+++L K ++ Sbjct: 747 SEVADVMDQVVEAGDYKVLPVSVKDVDMNALRTLGDDLKGKIGSGVVILAS-DMGGKVNL 805 Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ T+D + +A + + +A ++GGGG GGRP+MAQ+GG N A+ K Sbjct: 806 IVTATDDAVKAGAHAGKIIKEAAALVGGGG-GGRPNMAQAGGKNPAGIKAALEKAVEIAK 864 Query: 898 K 898 + Sbjct: 865 E 865 >gi|163814106|ref|ZP_02205498.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759] gi|158450555|gb|EDP27550.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759] Length = 887 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 338/901 (37%), Positives = 493/901 (54%), Gaps = 40/901 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEF + GH + S SLIP ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G+SAD+I R DNFW GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVSADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ G++Y + V+ R+I DH+RS +F+ +DGI+P+NEGRGY Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + AYPEL + K I + E+E F Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELCEKKEYIFNKIDKEEESFN 360 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D GL +L + +++L+GD AFKLYDT+G PLD+ ++I+ +D Sbjct: 361 KTIDTGLAILKDYIEETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEIIE-EEGIEVDEAR 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + + Q+ AR + + ++F+GYD L + L Sbjct: 420 FTECMNIQKETARNARQTTTYMGADATVYEQLPVDMTSEFVGYDKLTYKSKITAITTELG 479 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + ++ + + G + ++ +TPFYA GGQ+GD G Sbjct: 480 EGKD---------------KKSVLADTVSEGAQATIIVPETPFYATMGGQIGDKGIIKTK 524 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + D K G H VE G L LT+D +NR + NHSATHLL AL Sbjct: 525 NGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQKAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + P LRFD +H + +T E+K +ED VN+ I ++PV T IM + Sbjct: 585 KMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDVPVCTDIMTVD 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY ++VRVVS+ G S CGGTHV++TG I + IVSE+ + Sbjct: 645 EAKKTGAMALFGEKYGEKVRVVSI-----GDFSKEFCGGTHVANTGVIGMFKIVSETGVA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG RRIEA+T A + + +L A K V R+E++ E ++L + K Sbjct: 700 AGTRRIEALTSIGALEYYRSMESELVEAAKAAKTDIHGVAARIEQLLAEVKELTNENKKL 759 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ E + + ++ I + D L+++ D + K+ I++L K Sbjct: 760 KDKMAKEAAGDVLSNAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSIVVLASA-K 818 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ + T+ + +A ++ + A ++GGGG GGRP+MAQ+GG + N D A+A Sbjct: 819 DGKVNLIAMATDGAVAKGAHAGNIIKAVAGLVGGGG-GGRPNMAQAGGKDPNGIDAALAQ 877 Query: 892 V 892 Sbjct: 878 A 878 >gi|325104121|ref|YP_004273775.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145] gi|324972969|gb|ADY51953.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145] Length = 880 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 322/926 (34%), Positives = 496/926 (53%), Gaps = 78/926 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF GH+++PS+ ++ NDPTLMFTN+GM FK++F G+ Y V Sbjct: 3 MTAKEIRQAFLDFFASKGHQIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 Q+C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT LD Sbjct: 63 ADTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTDVLKLD 122 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ DE +A+ WK + +I++ DNFW M +TGPCGPCS Sbjct: 123 KDRLYVTVFEGDEKEGLPMDQDAYDFWKAF--VPESRILKGNKKDNFWEMGDTGPCGPCS 180 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI FD G + + + IEIWN VFM+F + LP +DTGMG Sbjct: 181 EIHFDNRSDEERAKVDGATLVNADDPQVIEIWNNVFMEFNRLKDGSLKKLPAQHVDTGMG 240 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLR 280 ER+ V+Q KT+NYD D+F +I + G+ Y V RV+ DH+R Sbjct: 241 FERLVRVIQGKTSNYDSDVFTPIIDFISKSAGIPYNAAATPDDKDWGQAVAMRVMADHIR 300 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + +F IADG LP+N GYV+RRI+RRA+ YA LG+ EP + L+P L + + E Sbjct: 301 AIAFAIADGQLPSNNKAGYVIRRILRRAVRYAYQYLGFKEPFLNKLVPLLAAQFKGVFDE 360 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 LI + +++ + E+ F +TL+ G+ + + +I +G AF+LYDT+G P+D Sbjct: 361 LISQQDFVQKVILEEENSFLRTLENGINRFEKYIQDNQDRQI-DGAFAFELYDTYGFPID 419 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + + +GL +D+ F+ L++Q+ R+RA + W ++ E +F+G Sbjct: 420 LTELMAREKGLT-VDMAGFDTELQKQKERSRAA-----TAIDAGDWITVNED-DEVEFVG 472 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD + + + + RKV +A ++ ++V D TP Sbjct: 473 YDEVVATSRILKYRKV----------------------------KAKGKEQYQLVLDVTP 504 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE+GGQ+GD+G + + I D +K+ I + + + ++ Sbjct: 505 FYAESGGQVGDSGVLENENESIIINDTKKENGLIIH---FADVLPHNLNATFIAKVNVHT 561 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR NHSATHLLH AL +LG HV+Q GS + D LRFD +H +T E+ IE V Sbjct: 562 RRLTENNHSATHLLHAALKAVLGDHVNQKGSLVNADVLRFDFSHFSKVTEQEIAKIEAIV 621 Query: 640 NDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N + +N+P R + + A+ SG AL G KY D VRV++ + +S LCGGTH Sbjct: 622 NQKVRENIPLKEERNVPYQKALESGVTALFGEKYGDYVRVITFDDS----YSKELCGGTH 677 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +TG+I IVSES++ AG+RRIEAIT +A ++ Q + L L LK + ++ Sbjct: 678 VKATGQIGYFKIVSESAVAAGVRRIEAITADKAEEYINNQAQLLAVLKELLK-NPKDLTK 736 Query: 759 RVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVM 813 VE + EE KL+ K + ++D+ K + DVN ++ I +++ +K++ Sbjct: 737 SVESLLEENNKLKKEIEKSVLEKASVLKDVLKSKVTVVNDVNLIAEEIDLSNAEAIKNLA 796 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871 L+ + + ++L G + + K ++ ++++++L+ +A + R AK + GG GGG+ Sbjct: 797 YQLKDIVDNLFLVL-GANIDGKPNLTVMISDNLVKEKGLDAGKIIRELAKEINGG-GGGQ 854 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897 P A +GG N A+ +LK Sbjct: 855 PFYATAGGKNPEGLKSALEKAIIYLK 880 >gi|314933784|ref|ZP_07841149.1| alanine--tRNA ligase [Staphylococcus caprae C87] gi|313653934|gb|EFS17691.1| alanine--tRNA ligase [Staphylococcus caprae C87] Length = 876 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 341/914 (37%), Positives = 509/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED A+K+W + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G+ P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGDEYGQNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I E V+G KY V +VI DH+R+ +F IADG Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ + + G+ AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L+ +D+ +F +++QR RAR S + LK + F+GY+ Sbjct: 414 LS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 SI+ ++ GE VE +G+ V TPFYA +GGQ+ Sbjct: 467 -------------------QSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + +++V K G +H IV+ G + +++ ++RR + NHSA Sbjct: 508 DEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + D LRFD +H P+T EL +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGYHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M ++A + GA AL G KY+D VRVV++ S LCGG HVS+T EI L Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYSDIVRVVNMAP-----FSIELCGGIHVSNTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L K ++ + +KV VVG+V ++ EE + Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEEEK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + I D+ ++ + ++K ++S MD + K+Q Sbjct: 743 SLLKQLEQRNKEITSLKMGNVEDQVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L D+ A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 IIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 +A+ + ++K Sbjct: 861 NITEALHFLKDYIK 874 >gi|313895726|ref|ZP_07829282.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975852|gb|EFR41311.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 875 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 329/911 (36%), Positives = 511/911 (56%), Gaps = 59/911 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R T+L+FF +K H L S SLIP +DPTL+ +GM P K FTG+ KP Sbjct: 4 MTGNELRETYLQFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPRPR 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L Sbjct: 64 ITTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++++Y +D EA +W + GL D I+ + DNFW + GPCGP SEI+ D G Sbjct: 120 PKEKLWVSIYPDDNEARAIWLEQPGLLPDHIVPLN--DNFWEIGP-GPCGPDSEIYIDLG 176 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +R++EIWNLVF Q+++ + E +L +IDTG GLER+A+V+Q Sbjct: 177 EERGCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I + +++G+ Y + ++ +VI DH RS S +I DGILP+NEG Sbjct: 237 NKETNFETDLLYPIIAYASKISGVAYGSDKRKDISLKVIADHARSISVMIMDGILPSNEG 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354 RGYVLRR +RRA+ + R+LG T+P + + A+ A + EL + I+ +R E Sbjct: 297 RGYVLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVE 356 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF TL +G+ LL+G + L ++ +L GD+ FKLYDT+G P ++ ++IL G+ Sbjct: 357 EERFASTLAQGMELLNGEIGRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT- 415 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + F++ +E QRSRAR+ D Sbjct: 416 LDGVEFDKEMEAQRSRARSARA-----------------------------ENQVVAVPD 446 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + ++V AI + GEIV+ G+ ++ D+TPFYAE GGQ+GD G Sbjct: 447 LSNIDTSALRSDSTAKEAVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEG 506 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + I++ +K +G H A VE G + + +T++ + + + NH+ATHL Sbjct: 507 VLRSDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHL 566 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++G+HV Q GS +TPD LRFD T+ +P+T +++ IE+ VN I +++ + Sbjct: 567 LQAALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDIS 626 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M DA GA AL G KY D VRVVSV S LCGG+HV +TG+I L I+ Sbjct: 627 MMPIADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIG 681 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEAITG+ A S+ ++ ++ LK ++ ++++ +E + +Q Sbjct: 682 ESGVAAGVRRIEAITGKAAFSYAATLYHTVQEISEKLKTRPEDLSSQIDKFLDERKAMQE 741 Query: 773 IHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K ++ +I + + + EL+++ D +K+ GI++L Sbjct: 742 QLRQFAEFRDKADAQKLLMAVREIGAFHVVVGKANVDSMDELRTIADLACEKLDHGIVIL 801 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S+++ ++ + +A + + +AK +GGGG GGRP MAQ+GG Sbjct: 802 AAV-IDDKVSLVVKADKNAVSAGAHAGQIIKEAAKEVGGGG-GGRPDMAQAGGKTPENIP 859 Query: 887 QAIAGVASFLK 897 QA S ++ Sbjct: 860 QAFDAAISVIQ 870 >gi|260887236|ref|ZP_05898499.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185] gi|260863298|gb|EEX77798.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185] Length = 871 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 340/912 (37%), Positives = 512/912 (56%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R +L+FF +K GH LPS+SLIP NDPTL+ +GM PFK FTG+ KP Sbjct: 1 MTGNELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT Q+CVR G D++NVGRT RH T+FEMLGNFSFG YFK+ AI AW+ LT DL Sbjct: 61 ITTSQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TVY +D+EA +W++ G D I+++ DNFW + GPCGP SEI+ D G Sbjct: 117 PKEKLWVTVYPKDDEAAAIWREQPGFPQDHIVKLD--DNFWEIGP-GPCGPDSEIYIDLG 173 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +RY+EIWNLVF QF++ + L +IDTG GLER+A+VLQ Sbjct: 174 EERGCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQ 233 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I+ + +V+G+ Y V+ +VI DH RS + +I DGILP+NEG Sbjct: 234 NKKTNFETDLLFPIIEYASKVSGVVYGENAEKDVSLKVIADHARSMAIMIMDGILPSNEG 293 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354 RGYVLRRI+RRA+ + R+LG + + + A+ A + EL + K I++ + E Sbjct: 294 RGYVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++RF TL +G+ LL+G + L ++ ++L G++ FKLYDT+G P ++ +IL Sbjct: 354 EDRFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHE-NEME 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D SF +A+EEQR RARA + D Sbjct: 413 LDKDSFEKAMEEQRERARAARQ-----------------------------ENQRVAVPD 443 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + N S V AI + G +V+E G++ ++ TPFYAE GGQ+GD G Sbjct: 444 LSGIDTSHLCVDENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAG 503 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + R+Q+ + +K +G H VE G+L+ + + ID+ + + NH+ATHL Sbjct: 504 LLETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHL 563 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++G V+Q GS + P+ LRFD ++ +P+T+ +L+ +E VN+ I PV Sbjct: 564 LQAALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIA 623 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M + A GA AL G KY D VRVVSV S LCGG+HV + GEI + IVS Sbjct: 624 QMEIDKAKKLGAMALFGEKYGDVVRVVSVP-----DFSIELCGGSHVKNIGEIGMFKIVS 678 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I +G+RRIEA+TG+ A ++ + E L + A K +V +E E +KL+ Sbjct: 679 ETGIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQ 738 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A + + D +I D++F S I+ + +L+ + D L +++SG+++L Sbjct: 739 EIASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVL 798 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 E K S++ ++ + + +A ++ + +AK++GGGG GGR MAQ+GG K Sbjct: 799 AAAH-EGKVSLVAKASDAAVAKGAHAGNIVKAAAKIVGGGG-GGRKEMAQAGGKEPAKMP 856 Query: 887 QAIAGVASFLKK 898 +A+ L + Sbjct: 857 EALQEAERVLAE 868 >gi|302533385|ref|ZP_07285727.1| alanyl-tRNA synthetase [Streptomyces sp. C] gi|302442280|gb|EFL14096.1| alanyl-tRNA synthetase [Streptomyces sp. C] Length = 889 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 331/923 (35%), Positives = 510/923 (55%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGETKPPAPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY +D+EA +W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLEPEKLWITVYLDDDEAETIWRDVIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + +++ + ++TG++Y + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMEKATELTGVRYGAAKGSDVSMRVVADHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLIDVVIDTMGQQYPELITDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K + G +LD + + +L+GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKAVKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + GAT+F GY Sbjct: 415 EQGLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGY----- 468 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 TN S + ++ G A G +VEVV D+TPFYAE G Sbjct: 469 ------------------ATNQGESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G +++ DVQ+ G+ VH V+ G + S ID + RR ++ Sbjct: 511 GQLADQGRIKLDTGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +ND+++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVTAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTSQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RR+EA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIASML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD----SKELKSVMDALQK 818 + + + K + + ++ + D+ ++ ++ +V + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLASNAQDIRGVALVVGQVPDGTGADDLRKLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ ++ L ++ ++ +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGDRPAVVALFTVANDRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N +AIA V + + Sbjct: 865 QGGGQNPGAVPEAIAAVERLVAE 887 >gi|113478168|ref|YP_724229.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101] gi|122964340|sp|Q10VG8|SYA_TRIEI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110169216|gb|ABG53756.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101] Length = 874 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 335/905 (37%), Positives = 504/905 (55%), Gaps = 53/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F+ + H +LPS+SL+P DPT++ T +GM+PFK IF GQ+ Y T Sbjct: 7 TGNEIRKKFLSFYAQREHTILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQPRQYPRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK AI LAW+L TK F L Sbjct: 66 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKPEAIALAWELSTKIFALPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+ ED+EAF +W+ G+ A +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 122 ERLVVSVFREDDEAFAIWRDQIGIPAHRIQRMDEADNFWASGPTGPCGPCSEIYYDFHPE 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ N Sbjct: 182 L-GDDHIDLEDDTRFIEFYNLVFMQYNRDANGNLTPLENRNIDTGMGLERMAQILQKVPN 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + + Y ++ + +VI DH+R+ + LIADG+ +N GRGY Sbjct: 241 NYETDLIFPIIKTASDIADIDYRKSDDKTKVSLKVIGDHVRAVANLIADGVTASNVGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + + T YP L + + +I+ L+ E+ RF Sbjct: 301 ILRRLIRRVVRHGRLIGISGEFTSKVAETAITLAEDIYPNLRERETVIKAELQREESRFL 360 Query: 360 KTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TL+RG LL +++ K + ++G+ AFKLYDT+G PL++ Q+I GL +D+ Sbjct: 361 ETLERGEKLLAEIMAKPETKKTQHISGEDAFKLYDTYGFPLELTQEIAEENGLT-VDVSM 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+Q ++ + R+++ + + + + TQF+GY L Sbjct: 420 FDQEMKLAQIRSQSAHETIDLTAQDGVKLDI----DKTQFLGYTDLSSP----------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + V A+V GE +E +G +V++V D+TPFYAE+GGQ+ D G GD Sbjct: 465 ------------AQVMALVGDGEQLETVQAGAQVQIVLDKTPFYAESGGQIADRGYLSGD 512 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + ++I DV +K IFVH +ERG L+ M++ ID RR+ NH+ATHLL AL Sbjct: 513 SLVVRIEDV-QKQNNIFVHFGRIERGRLQLGMTVNAQIDGTCRRRAQANHTATHLLQAAL 571 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +++ S +SQ GS ++ D LRFD + + E++ +E VN IA+ M E Sbjct: 572 RSLVDSSISQAGSLVSFDRLRFDFNCPRGLKPEEVEQVEAQVNSWIAEAHSATVAEMPLE 631 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A GA A+ G KY D VRVV S LCGGTHV++T EI + I+SE+ I Sbjct: 632 VAKAKGAVAMFGEKYADVVRVVDYPG-----VSMELCGGTHVNNTAEIGVFKIISEAGIS 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G +L +D +K L+ K + RV + +E + Q Sbjct: 687 SGVRRIEAVAGLAVLDYLKVRDAVVKELSDRFKAKPEELSERVSNLQQELKDSQKQLEAL 746 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L V + + + + + VD++ LK+ + LQ+K+ ++L G + Sbjct: 747 KGELAVAKSDQLLGNAETVGEFQILVAEMPGVDAEALKTAAERLQQKLDESAVVL-GSAA 805 Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K S++ ++ + A AK+ GGGG GGRP++AQ+GG + +K +A+ Sbjct: 806 EGKVSLVAAFSKSVNGKGLQAGKFIGGIAKICGGGG-GGRPNLAQAGGRDPSKLKEALES 864 Query: 892 VASFL 896 L Sbjct: 865 AKEQL 869 >gi|319957309|ref|YP_004168572.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511] gi|319419713|gb|ADV46823.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511] Length = 859 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 339/896 (37%), Positives = 511/896 (57%), Gaps = 52/896 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR +L++F + GH ++PSS L+P +DPTL+FTN+GMV FK+IFTG+ P T+ Sbjct: 2 DIRKMYLDYFAQRGHRVVPSSPLVP-DDPTLLFTNAGMVQFKSIFTGEAPIPNPPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T + L Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFVTGEEYLALPV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181 ++++TV++ D+EA+++WK+ ++ ++I R DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 EKIWVTVHESDDEAYEIWKE--HIAEERIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGAE 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G +G+R++EIWNLVFMQ+E+ E LPK SIDTGMGLER+ + + Sbjct: 179 HFNGPEDYMGGDGDRFLEIWNLVFMQYERDETGELHPLPKPSIDTGMGLERVVAIKEGVF 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NNYD LFK LI A ++ G I ++RVI DHLRS++FL+A G+ EGRGYVL Sbjct: 239 NNYDSSLFKPLIDAITEIVGKAPTEETIASYRVIADHLRSTTFLLAQGVNFDKEGRGYVL 298 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRA+ + LLG EP M L+ L +MG Y L + ++ ++ E+ERF +T Sbjct: 299 RRIMRRAIRHGYLLGLREPFMHRLVDTLVEQMGGHYDYLPKRAEAVKTAMKMEEERFFET 358 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 ++ G+ L + L ++ +G+VAFKLYDT+G PLD+ QD+L +G +D+ +F Sbjct: 359 IEAGIKLFNEELQRT--KDVFSGEVAFKLYDTYGFPLDLTQDMLREKG-IELDMATFEGK 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + EQ++++RA G G + +L+E++G +F+GY+ + Sbjct: 416 MAEQKAKSRAAWKGSGDAAVSGDFKALEERHGPNRFVGYEETDTKTRI------------ 463 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIR 540 V + + + V++ V+ D TPFYAE+GGQ+GD G + G Sbjct: 464 ----------VALLDENFKEVQKLEG--LGWVMLDPTPFYAESGGQVGDRGELVVWSGGP 511 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +K + + + E L + +D R+ ++ +HSATHLLH AL + Sbjct: 512 NVKVLDTRKFHALNLSYVDTEGNTLEVGQEVEALVDDSRRQ-IAKHHSATHLLHAALREV 570 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + LRFD TH K +++ EL+ +E VN+++ + + +++ E+A Sbjct: 571 LGEHVTQAGSLVEATRLRFDFTHPKALSAEELQKVEHWVNEVVDRAIEGEVKVLPIEEAK 630 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRVV G S LCGGTHV +T E+ L I ES + AG+ Sbjct: 631 KEGAMALFGEKYGDEVRVVRF-----GDASVELCGGTHVRNTAEVGLFAITKESGVSAGV 685 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ G+ + + K + +K + + ++ E+ + L+ L Sbjct: 686 RRIEAVCGKESAKLFDHLRRERKEIVEAVKNP--EPLAGIAKLKEQIKTLKSELDAA-LA 742 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 ++L+ KI D+ + + EV + ++K ++D ++ + + +ML +K +L Sbjct: 743 GGAKELAEEKIGDITVI---VDEVKAGDIKKMIDEIKNRHEKVAVMLFQKKGDK--VLLA 797 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +++ A D + A +LGGGG GGRP AQ+GG N K +A+ +L Sbjct: 798 AGSKNTP--VKAGDWIKEVAPILGGGG-GGRPDFAQAGGKNPEKIPEAMRAAKGYL 850 >gi|309791340|ref|ZP_07685863.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6] gi|308226650|gb|EFO80355.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6] Length = 895 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 355/918 (38%), Positives = 523/918 (56%), Gaps = 56/918 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR T+L+FF+++GH ++PS+SL+ +DPTL+F NSGMVPFK++F G E+ Y TT Sbjct: 8 AAQIRETYLKFFERHGHTIVPSTSLVVADDPTLLFVNSGMVPFKDVFLGLEQRPYSRATT 67 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VG + RH TFFEMLGNFSFG YFK AI +AW LL +EF L Sbjct: 68 AQKCLRVSGKHNDLEEVGPSPRHQTFFEMLGNFSFGDYFKADAIAMAWKLLVEEFKLPVE 127 Query: 124 RLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 RL+ TV+ D+ EA +LW G +++R DNFW M +TGPCGPCSEI Sbjct: 128 RLWFTVFAGDDEVPADEEAAQLWIAQ-GADPARVLRFGRKDNFWVMGDTGPCGPCSEITM 186 Query: 178 DQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 G+ + G + + Y+EIWN VFMQ+E+ LP+ S+DTGMGLERM V Sbjct: 187 YIGDDLAKMSAAGVNSDDPDYVEIWNNVFMQYERS---TMRPLPRQSVDTGMGLERMTMV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q +NYD DLF +I G + N+ +R I DH R+ +FLIADG+LP N Sbjct: 244 MQGVHSNYDTDLFVPIINRIITELGSDEAHYRANLAPYRAIADHSRAIAFLIADGVLPGN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GR YVLRRI+RRA R +G+T P + ++ + EM AYP+L + I E+ +E Sbjct: 304 NGRSYVLRRILRRAAYQGRSIGFTRPFLAEVISTVIGEMAPAYPQLAERHAFILESANAE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F +TL G+ L ++ + + G+ AF L DT+G PLD+ Q I GL Sbjct: 364 EQQFLRTLSGGISRLSTIIEQVQSSGGNAVPGNDAFVLKDTYGFPLDLTQRIAGEAGLT- 422 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + A+ EQR R+RA + G +IW + +T+F+GY + Sbjct: 423 VDEAGYTAAMNEQRERSRAAAQF-KRGADAEIWAD--KGLPSTEFLGYTQV--------- 470 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + A+V G+ V A +G VE+V D+TPFYAE+GGQ+GD+G Sbjct: 471 --------------AASGQILALVANGDDVSSATTGSPVEIVLDRTPFYAESGGQVGDSG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G +++ D + A G+ VH+ +VE G + ++ + R + NH+ATH+ Sbjct: 517 RLVGPHGTVRVDDTLRPAPGLIVHYGVVESGQVTVGEAVQAEVAVTRRADIERNHTATHM 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++G H +Q GS + PD LRFD TH++ + +A+L+ IE +N + + V + Sbjct: 577 LQRALRDVVGEHAAQAGSLVAPDRLRFDFTHNRALDTAQLREIESRLNAWVRADGAVAWQ 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIM 706 +M+ + A+ +GA AL G KY D+VR+V++E E S LCGGTHV TGEI Sbjct: 637 VMDYQAALDAGAIALFGEKYGDQVRMVTIERNGTTSMEFASRDSRELCGGTHVKRTGEIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + +V ESSI +GIRRIEA+TG+ A Q E L+ LA L VS V RVE++ E Sbjct: 697 YVRLVGESSIGSGIRRIEALTGRGAEVWAEQQAEVLRDLAGRLGVSVAQVSERVEQLVSE 756 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+ Q + ++ + ++ V ++ + D+ L+ + D L+ K+ Sbjct: 757 NRQRQQELDALRGKMARASIESLLDTVNRDGAVPVLAAQVEAEDANRLREMGDWLRDKLG 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 SG+I+L + E K +L +VT DL+ ++A +L + A+++GGGG GGRP MAQ+GG Sbjct: 817 SGVIVLGTVIAE-KPQILTMVTPDLVKAGYHAGNLVKALAQIVGGGG-GGRPEMAQAGGR 874 Query: 881 NGNKADQAIAGVASFLKK 898 + K + IA + + Sbjct: 875 DVRKLAEVIARAPELVAE 892 >gi|223044141|ref|ZP_03614180.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14] gi|222442535|gb|EEE48641.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14] Length = 876 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 341/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED A+K+W + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G+ P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGDEYGQNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I E V+G KY V +VI DH+R+ +F IADG Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ + + G+ AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L+ +D+ +F +++QR RAR S + LK + F+GY+ Sbjct: 414 LS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 SI+ ++ GE VE +G+ V TPFYA +GGQ+ Sbjct: 467 -------------------QSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + +++V K G +H IV+ G + +++ ++RR + NHSA Sbjct: 508 DEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + D LRFD +H P+T EL +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M ++A + GA AL G KY D VRVV++ S LCGG HVS+T EI L Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVSNTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L K ++ + +KV VVG+V ++ EE + Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEEEK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + I D+ ++ + ++K ++S MD + K+Q Sbjct: 743 SLLKQLEQRNKEITSLKMGNVEDQVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L + + K S++ V + L D+ A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 IIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 +A+ + ++K Sbjct: 861 NITEALHFIKDYIK 874 >gi|308233742|ref|ZP_07664479.1| alanyl-tRNA synthetase [Atopobium vaginae DSM 15829] gi|328943732|ref|ZP_08241197.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829] gi|327491701|gb|EGF23475.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829] Length = 882 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 341/905 (37%), Positives = 505/905 (55%), Gaps = 44/905 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ G + SSSLIP DP+L+ N+GM FK + G + Sbjct: 9 MTTAEIREDFLSFFESKGCKRYESSSLIPE-DPSLLLANAGMNQFKEYYQGTKTMREIGA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119 T+ QKC+R ND++N+G RH +FFEMLGNFSFGGY K +AI AW+ +T Sbjct: 68 TSCQKCLRT----NDIENIG-DARHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPAHLG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + RLY+TV+ +D+EA +LW++ G++ D I R+ DNFW+ TGPCGPCSEI+FDQ Sbjct: 123 LPKDRLYVTVFTDDDEACELWQQQ-GVALDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 181 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G P ++G+RY+E WNLVF QF++Q LP +IDTGMGLERMA ++Q Sbjct: 182 GPSFEGEKP--GDDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERMAAIMQH 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +NY+ D+ + LI E+++ Y + + R++ DH R+ +F+I DGILP NEGR Sbjct: 240 EGSNYEGDVLRSLIGVGEELSHKTYHSSERVDTSLRILADHARAVTFMIGDGILPGNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + RL+G + + M YP+L+Q K LIE + +E++R Sbjct: 300 GYVLRRLLRRAIYHGRLMGIEGSFLTKYSAEVMRLMAQVYPQLLQNKALIEGIISAEEQR 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TLD G L L+HL +L G+VAFKL+DT+G P+D+ ++I G +D+ + Sbjct: 360 FTATLDAGEQALKDELAHLDAGSVLPGEVAFKLHDTYGFPIDLTREIALGLGH-DVDMDT 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + +E+QRSRARA + GT+ +W L + + T F+GYD Sbjct: 419 FEKLMEDQRSRARAQATRDAWGTSNSVWAKLSDSHEMTTFVGYDHNTLDG---------- 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + V A+V G V++ + +VEVV D TPFY E GGQ+GDTG + Sbjct: 469 ------------AHVVALVVDGASVDKVQANTRVEVVLDATPFYGERGGQVGDTGYLSNE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++L++ + + + H ++E+G L +L ID R + NH+ATHLL AL Sbjct: 517 SVKLRVENTLHREGELLSHECVLEQGTLAVGDTLNCAIDVHRRECIRRNHTATHLLDAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HVSQ GS + PD LRFD TH + +T A++ +E VND I P+VTRIM+RE Sbjct: 577 IKVLGDHVSQAGSLVAPDRLRFDFTHFEALTPAQIAQVEQLVNDEIFAAEPMVTRIMSRE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A SGA L Y D VRVVS D +S LCGGTH +T +I I+SE+S+ Sbjct: 637 EAKNSGAIQLFEDMYGDDVRVVSTGTSD-HPYSRELCGGTHARNTADIGCFKIISETSVG 695 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 + +RR+EA+T ++ ++++L +A LK +VV RVE + +E L+ + Sbjct: 696 SNVRRLEALTSLGYIDYMKTREDELSQIACLLKCRPQDVVSRVEALKDEKNALEKKVKEA 755 Query: 778 K-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGIS 831 +++ + + D + + V K+L+SV D + +++ +L+ + Sbjct: 756 LTGSSSQKVSSALENALDLGDYKVVLAHLEGVSGKDLRSVWDGIHQRLGEKSACVLLSAT 815 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 +K + + FNA L + A G GGGRP MAQ+GG + A+A Sbjct: 816 ADKVQLLAAATQAAVDAGFNAGALIKNIAP-CVDGRGGGRPVMAQAGGNRVEGINDALAL 874 Query: 892 VASFL 896 L Sbjct: 875 AKQLL 879 >gi|291460300|ref|ZP_06599690.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417055|gb|EFE90774.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 882 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 335/904 (37%), Positives = 505/904 (55%), Gaps = 40/904 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF++ H + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRRMFLEFFEEKQHLRMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFKE AI AW+ LT+ + Sbjct: 66 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKEEAIHWAWEFLTERVGIPAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++WK+ G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLDDDEAFRIWKEEIGIAPERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 P-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G EG+R++E+WN+VF QF L +IDTGMGLER+A V Q+ + Sbjct: 181 GTGPEDVMGGEGDRFMEVWNIVFSQFNNDGHGVYTELEHKNIDTGMGLERLAVVCQDVLS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D + +++ + +Y + V+ R+I DH++S +F+ +DGILP+NEGRGYV Sbjct: 241 LFDVDTNRAMMEEIGALAHCRYEEDPEKDVSFRIIADHVKSCTFMASDGILPSNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 RR++RRA + ++LG M L + YPEL + + +I + E+ERF Sbjct: 301 FRRLLRRAARHGKILGLKGRFMAALSQKVIELSKDGYPELEEKREMILRVIEQEEERFQN 360 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +L + + K ++L+G+ AF+LYDT G P D+ ++IL +G + ID F Sbjct: 361 TIDKGLEILSELQEEMKKRGEKVLSGEDAFRLYDTFGFPPDLTREILSDKGQS-IDEEGF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A+ QR ARA + I+ L K T+F GY L + ++ + Sbjct: 420 QKAMRLQRETARAARKSTNYMGRDDIYQRLDPKL-RTEFTGYHSLTERSKITALVRLAPE 478 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + EIV+ G++ V+ ++TPFYA GGQ+GDTG +G Sbjct: 479 DG-----------------EDEIVDVLTDGERGAVLTERTPFYATMGGQVGDTGSILGGE 521 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + G + G+L+ L +D R + + NH+ATHLLH AL Sbjct: 522 GDFTVEETIHLQGGKIAEIGTMRSGMLKAGEEAELRVDPIRRERTARNHTATHLLHEALR 581 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV Q G+ LRFD TH + +T E++ +E+ VN I++ PV T M+ ED Sbjct: 582 EVLGNHVEQAGAYYDDKRLRFDFTHFEALTEEEIRKVEEIVNREISKLTPVKTEEMSLED 641 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A SGA AL G KY DRVRVVSV G S LCGGTHV++T EI L I+SE I + Sbjct: 642 AKKSGAVALFGEKYGDRVRVVSV-----GDFSKELCGGTHVANTAEIQGLKILSEQGIAS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+T + ++ ++E L+ A LK ++ R+ + +E + + + Sbjct: 697 GVRRIEALTSENLMAYFSEEEELLREAAKLLKTEPKHLSERILALEKELKDSRAEAESLR 756 Query: 779 LQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 +L E +LS +I+ V+F++ + D L+ + D L+++ I+L K K Sbjct: 757 AKLAKESMGELSVEEISGVSFLAKALEGADGNSLRELGDQLKERYPDAFIVLAS-DKGGK 815 Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 ++ + + + +A L R A +LGGGG GGRP+MAQ+GG + ++ +A+ Sbjct: 816 PCLMATAADSAVKKGADAGALIRAVAPILGGGG-GGRPNMAQAGGKDTSRIPEALEKARE 874 Query: 895 FLKK 898 K+ Sbjct: 875 IAKE 878 >gi|330839006|ref|YP_004413586.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] gi|329746770|gb|AEC00127.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] Length = 874 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 340/912 (37%), Positives = 512/912 (56%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R +L+FF +K GH LPS+SLIP NDPTL+ +GM PFK FTG+ KP Sbjct: 4 MTGNELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTR 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT Q+CVR G D++NVGRT RH T+FEMLGNFSFG YFK+ AI AW+ LT DL Sbjct: 64 ITTSQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TVY +D+EA +W++ G D I+++ DNFW + GPCGP SEI+ D G Sbjct: 120 PKEKLWVTVYPKDDEAAAIWREQPGFPQDHIVKLD--DNFWEIGP-GPCGPDSEIYIDLG 176 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +RY+EIWNLVF QF++ + L +IDTG GLER+A+VLQ Sbjct: 177 EERGCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I+ + +V+G+ Y V+ +VI DH RS + +I DGILP+NEG Sbjct: 237 NKKTNFETDLLFPIIEYASKVSGVVYGENAEKDVSLKVIADHARSMAIMIMDGILPSNEG 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354 RGYVLRRI+RRA+ + R+LG + + + A+ A + EL + K I++ + E Sbjct: 297 RGYVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIE 356 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++RF TL +G+ LL+G + L ++ ++L G++ FKLYDT+G P ++ +IL Sbjct: 357 EDRFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHE-NEME 415 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D SF +A+EEQR RARA + D Sbjct: 416 LDKDSFEKAMEEQRERARAARQ-----------------------------ENQRVAVPD 446 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + N S V AI + G +V+E G++ ++ TPFYAE GGQ+GD G Sbjct: 447 LSGIDTSHLCVDENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAG 506 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + R+Q+ + +K +G H VE G+L+ + + ID+ + + NH+ATHL Sbjct: 507 LLETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHL 566 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++G V+Q GS + P+ LRFD ++ +P+T+ +L+ +E VN+ I PV Sbjct: 567 LQAALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIA 626 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M + A GA AL G KY D VRVVSV S LCGG+HV + GEI + IVS Sbjct: 627 QMEIDKAKKLGAMALFGEKYGDVVRVVSVP-----DFSIELCGGSHVKNIGEIGMFKIVS 681 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I +G+RRIEA+TG+ A ++ + E L + A K +V +E E +KL+ Sbjct: 682 ETGIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQ 741 Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A + + D +I D++F S I+ + +L+ + D L +++SG+++L Sbjct: 742 EIASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVL 801 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 E K S++ ++ + + +A ++ + +AK++GGGG GGR MAQ+GG K Sbjct: 802 AAAH-EGKVSLVAKASDAAVAKGAHAGNIVKAAAKIVGGGG-GGRKEMAQAGGKEPAKMP 859 Query: 887 QAIAGVASFLKK 898 +A+ L + Sbjct: 860 EALQEAERVLAE 871 >gi|239637575|ref|ZP_04678547.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603] gi|239596793|gb|EEQ79318.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603] Length = 876 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+K+W + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDIEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEDFGKDDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I EQV+G Y NN +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKNYLQNNDQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKSDFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+G +S + ++ +NG AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLEEGLSILNGFISQAKEGNQEINGKDAFKLYDTYGFPIELTEELATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK + F+GYD Sbjct: 414 LT-VDMTTFETEMQQQRDRARQARQNSQSMQVQSEV--LKNITTESHFVGYDTTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + ++Q GE V++A + + + + TPFYA +GGQ+ Sbjct: 467 -------------------QTELIHLIQNGEEVDKADAEETIYFMLKDTPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + +T+V K G +H V+ G + + +++ RR + NHSA Sbjct: 508 DKGIVSNDHFEIAVTEVTKAPNGQNLHKGTVQFGQVNKGSEVDASVNKDERRSIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + P+ LRFD +H +T E+ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGEHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEIWRGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + MN ++A A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 RIQEMNIDEAKAMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVENTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L E+ + +KV + VV ++ +I +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQIQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + I + ++ + ++K ++S MD + K+Q Sbjct: 743 SLIKQLEQRDKEITSLKMGNIEDQVETINGLKVLATEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L + + K S++ V +D D+ A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 VIILAS-NVDDKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 +++ + ++K Sbjct: 861 NITESLRFIKDYIK 874 >gi|331269730|ref|YP_004396222.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925] gi|329126280|gb|AEB76225.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925] Length = 879 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 336/908 (37%), Positives = 507/908 (55%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179 + +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D Sbjct: 120 KDKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNKLEFPNIDTGMGLERMATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ + Y + ++ R+I DH+RS S +I+D +LP+NEGR Sbjct: 239 VETIFEVDTIKSILDKVANLANTSYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ ++ G AYPEL + K I++ + E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGIQGTFLHKIVDSVVENSGDAYPELKEKKDYIKKVISIEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L + L +IL+G+ FKLYDT+G PL++ ++IL + + +D+ Sbjct: 359 FSETIDSGMEILKEYIEELEKENKKILSGEKVFKLYDTYGFPLELTEEILEEKNMT-VDM 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++ QR RARA T+ T+F GY+ L Sbjct: 418 DGFNKEMKVQRERARAARSESTYMGTDVKVIDTIPSEIETKFDGYNNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + S +K I++ + + G+K +V D+TPFYAE GGQ+GD G Sbjct: 467 ------------LQSQIKVIIKNDDFADCIKKGEKGIIVTDKTPFYAEMGGQIGDKGTIS 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG ++ + +K G +H V G + ++L +D + R +S NHS THLLH Sbjct: 515 ADGFVAKVENCKKNIGGKIIHFVEVVEGSINLGNEVLLEVDKRRRDNVSKNHSTTHLLHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q+GS + D LRFD TH + +T EL +ED VND+I++ V T M Sbjct: 575 ALRKVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNDVISKVYEVETNEMT 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A SGA AL KY D+VRVV + G S LCGGTH+S+ G+I L IVSES Sbjct: 635 IEEARQSGAMALFDEKYGDKVRVVKM-----GNFSVELCGGTHISNIGKIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AGIRRIEA+TG +A + + L+ +A LK S+ ++V R+ + E ++ + A Sbjct: 690 IAAGIRRIEAVTGTKALEFMKDKSNLLREVAEMLKCSEKDIVNRLNQQNLELKEKEKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + +I + + +VD + L+++ D ++ K+ SG+++L G Sbjct: 750 ALKSKLASGSEDEILNNIKEIKGIKLAVADLKDVDGEALRNLGDKIKNKLGSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K + + ++D++ + + R AK+ GGGG GGRP MAQ+GG K A+ Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLKDAM 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 NAVENIME 875 >gi|75906451|ref|YP_320747.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413] gi|123745317|sp|Q3MGN4|SYA_ANAVT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|75700176|gb|ABA19852.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413] Length = 880 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 333/906 (36%), Positives = 506/906 (55%), Gaps = 49/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IRT FL+F+ + GH++L S+SL+P DPT++ T +GM+PFK IF GQ P ++ T Sbjct: 9 SGNEIRTRFLDFYAQRGHQILASASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RH TFFEMLGNFSFG YFKE+AI W++ T+ F L + Sbjct: 68 TSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EA+ +W+ G++ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 124 ERLVVSVFEEDDEAYVIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + L +IDTGMGLER+ +LQ+ N Sbjct: 184 -RGDENIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQQVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ G+ Y ++ + +VI DH+RS +IAD I +N GRGY Sbjct: 243 NYETDLIFPIIETAAKIAGIDYHSSDETTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + + SAYP + + + +I+ L E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFINQVAERAIALSESAYPNVRKRETVIKAELEREEANFL 362 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTLDRG LL+ ++ I++G+ AF LYDT+G PL++ Q+I L +D Sbjct: 363 KTLDRGEKLLEEIIQQVKKQGQTIISGESAFTLYDTYGFPLELTQEIAEENNLT-VDEDD 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN +++Q RA+A + T + L E AT+FIGY Sbjct: 422 FNVEMQKQVERAKAAHETIDL-TVQGSLDKLAEHIHATEFIGYSQ--------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V+ ++ G + EEA +G +V++V D+TPFYAE+GGQ+GD G G Sbjct: 466 --------ATATAKVEVLLVDGVVQEEAEAGTEVQIVLDKTPFYAESGGQIGDRGYISG- 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + KK FVH +ERG LR S+ ID RR+ NH+ATHLL AL Sbjct: 517 DGIVVQVEDVKKESDFFVHFGRIERGTLRVGDSVTAQIDRAGRRRAQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 TI+ +SQ GS ++ D LRFD + +T+ E++ +E+ +N IA+ ++ Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTAEEIQQVEEQINTWIAEAHSAKIEVLPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY D VRV+ S LCGGTHVS+T EI + I+SE+ + Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFPG-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R + Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + D + + VD + LKS + L +KI +G ++L + + Sbjct: 752 KGQLAIAKSDSLLQTADTLGDHKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLGSVPE 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K A+ Sbjct: 812 ADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGG-GGRPNLAQAGGRDASKLPTALEQ 870 Query: 892 VASFLK 897 S LK Sbjct: 871 AQSELK 876 >gi|313904037|ref|ZP_07837417.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6] gi|313471186|gb|EFR66508.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6] Length = 897 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 332/915 (36%), Positives = 508/915 (55%), Gaps = 49/915 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL +F++ L S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 9 VNELREMFLSYFEEKECLRLGSFSLVPHNDNSLLIINSGMAPMKPWFTGQEIPPRKRVTT 68 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G DL+NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 69 CQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFLTERVGLDAD 124 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +DEE++ +W + A++I + DNFW +GPCGPC+EI++D+G Sbjct: 125 RLYPSVYVDDEESYNIWLNDMHIPAERIYKFGKEDNFWEHG-SGPCGPCTEIYYDRGPQF 183 Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G EG+R++E+WN+VF QF K L + +IDTGMGLER+A +QE + Sbjct: 184 GNGPEDVMGGEGDRFMEVWNVVFSQFNNDGKGNYTDLVQKNIDTGMGLERLAVAVQEVGS 243 Query: 243 NYDIDLFKHLIQASEQVT-GMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +D+D K L ++ G+KYE + V+ R++ DH R+ +F+I+DGI+P+N GR Sbjct: 244 LFDVDTVKALRDLICELAGGVKYEQPGTEESDVSVRIVTDHARAMTFMISDGIMPSNNGR 303 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + R LG T + L + YPEL + + I +++E+++ Sbjct: 304 GYVLRRIIRRAVRHGRKLGITGSFLTKLAENVIEGSKDGYPELAEKRDFILNVIQAEEDK 363 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT ++G+ +L + + L+G AFKLYDT+G PLD ++IL G +D+ Sbjct: 364 FEKTYEQGMDILQSMQDALKAEGKKELSGPDAFKLYDTYGFPLDNTKEILEENGF-AVDV 422 Query: 416 ISFNQALEEQRSRARAHSLGLGS----GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 F A++ QR AR G + + + F+GY L + + Sbjct: 423 AGFEAAMKNQRETAREDRKKSGKSATYMGAAATVYEDMDPAVNSAFVGYQGLEATGKIVA 482 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 D + E GQ V+ DQTPFY GGQ+GD Sbjct: 483 LAAFAADDDEDDS----------------VAEALSDGQSGAVITDQTPFYGTMGGQIGDK 526 Query: 532 GCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + +++ + A H V +G+L+T + L +D +NR ++ NHSA Sbjct: 527 GVIVLGDGEAVFEVSATEHVAGNKIAHIGKVVKGMLKTGDEVSLKVDAKNRLAIARNHSA 586 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+ AL +LG+HV Q GS D RFD +H + +TS E++ +ED VN+ I++ L V Sbjct: 587 THLMQKALREVLGTHVEQAGSYQDADRTRFDFSHFQAMTSEEIRKVEDMVNEKISEGLAV 646 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T++M ++A +GA AL G KY D VRVV + G S+ LCGGTHV +T +I Sbjct: 647 TTQVMTLDEAKKTGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHVENTQQIAQFK 701 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I+SE+ + AG+RRIEA+TG R + + + + A+ LK + + + ++ EE + Sbjct: 702 ILSENGVAAGVRRIEALTGDNVRRYYEKLEAQTNAAAALLKATPATLADHIRKLQEELKA 761 Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ + K + L + +I V F++ +S VD EL+++ D L+ K+ G+ Sbjct: 762 LKSENEALKSKEAQNALGDVMNNIKEINGVPFLATAVSGVDMNELRNLGDELKAKVAGGV 821 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++LV + K +++ + T++ + + +A ++ + SAK++GGGG GGRP+MAQ+GG + + Sbjct: 822 VLLVS-DNDGKVNMMCMATDEAMKKGAHAGNIIKASAKIVGGGG-GGRPNMAQAGGKDAS 879 Query: 884 KADQAIAGVASFLKK 898 AIA L + Sbjct: 880 GIPAAIAEAEKVLAE 894 >gi|149924852|ref|ZP_01913189.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1] gi|149814267|gb|EDM73872.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1] Length = 919 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 341/925 (36%), Positives = 500/925 (54%), Gaps = 51/925 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ FL FF++ GH +PSS L+P +DPTL+F N+GMV FK++FTG++K Y T+ Q+ Sbjct: 10 IRSAFLSFFEERGHAAVPSSPLVPFDDPTLLFVNAGMVQFKDVFTGRDKRDYTRATSAQR 69 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDLDNVG T RHHT FEMLGNFSFG YFK AI+ W+ LT+ +L +L Sbjct: 70 CLRAGGKHNDLDNVGFTPRHHTLFEMLGNFSFGDYFKRDAIRWGWEFLTQVLELPAEKLV 129 Query: 127 ITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 ++V++ D+EA+ LW +I + ++I +NFW M +TGPCGPCSEI + Sbjct: 130 VSVFNGEGENAPFDQEAYDLWAEI--IPKERIYAFDAKENFWQMGDTGPCGPCSEIHIWR 187 Query: 180 GE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 GE G + E ++Y+E+WNLVFMQ+E+ E LP S+DTG GLER+A Sbjct: 188 GEGGAPPDGGKPGKGPAFEDDKYMELWNLVFMQYEKLASGEMTKLPAPSVDTGAGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293 VL+ NY+ LF ++ + + G+ ++RVI DH R+++FLIADG+ P Sbjct: 248 AVLEGVETNYETGLFVPIVDKVKALAGVSGHQGEREASYRVIADHARATAFLIADGVTPD 307 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 GR YVLRRIMRRA+ +A L+G + + + G AYPEL +A+ +I ++ Sbjct: 308 QTGRPYVLRRIMRRAIRHATLVGLEDLFFHEVCDEVVNRFGEAYPELREAREVIAGAVKI 367 Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E F +TL RGL + +L+ ++ D A LY + G P+D+ + I L Sbjct: 368 EEEGFRRTLARGLRRVSKILAGLEAEGSKVFPVDEAADLYTSAGFPIDLTRVIAEENELT 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGSKFMK 470 + + ++ + A G G ++F + + G T F+GY G +K Sbjct: 428 LDEAAVAEKLEAQKGESSFA---GGGGSKVADVYFDIVNELGQGTAFLGYGATAGEATLK 484 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + VE A +GQ VE++FDQ+PFY E+GGQ+GD Sbjct: 485 AIVIPAPEPAEGEPALEPT-----------RVESAQAGQAVELIFDQSPFYGESGGQVGD 533 Query: 531 TGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 TG + +T K G+ VHH + G + VL +D R + NHS Sbjct: 534 TGALRAVDGGAVVTVTQTSKPTGGLHVHHGELAGGSIAVGQRFVLEVDVARRDAIRRNHS 593 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LHHAL +LG HV+Q GS + PD LRFD +H++ +T E + IE VN ++ N P Sbjct: 594 ATHMLHHALRKVLGKHVAQKGSLVAPDRLRFDFSHARSVTREETRRIEAEVNAMVLANAP 653 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEI 705 T M+ DA +GA L G KY VRVV++ + G S LCGGTHV+ G++ Sbjct: 654 TGTAEMSLADAKQAGAIGLFGEKYGAEVRVVTIGEVETEAGEERSVELCGGTHVARAGDV 713 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IV+E + G+RRIEA+TG A + + E + +AS L+ G V+GR+E++ Sbjct: 714 GLFKIVAEGGVAQGVRRIEAMTGMGAVEWVQERAEVVDQVASDLRARDLGEVLGRLEKLH 773 Query: 765 EEYRKLQLIHAKRKLQLN-----VEDLSCHKIAD----VNFMSHIISEVDSKELKSVMDA 815 EE K +L + ++ V + I D K ++ D Sbjct: 774 EELAARGREIDSLKRKLATGGGGSQASEVVEVEGGGKTVKLTARRIPVADPKIMREAADT 833 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPH 873 L+ ++ SG+++L G ++ KA++L+ T+DL +A LA + G GGGRP Sbjct: 834 LRDRMGSGVVVLAG-ERDGKANLLVATTKDLAKGKIVHAGKLAAALVVHV-DGRGGGRPD 891 Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898 MAQ+GGP D +A A L K Sbjct: 892 MAQAGGPKVAGLDDVVAHAAEELAK 916 >gi|193214313|ref|YP_001995512.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] gi|193087790|gb|ACF13065.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] Length = 887 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 69/923 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF HE++ S+ +IP +DPTL+FTN+GM FK++F G Y Sbjct: 1 MTSKEIRQAFLDFFTSKQHEIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGIGSRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELLTDVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +D+EAF+LWK + ++A I R DNFW M ETGPCGPCSEI D Sbjct: 121 KDRLYATVYKDDDEAFELWKSETDIAASHIQRHGEKDNFWEMGETGPCGPCSEIHIDLTP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + IEIWNLVF+Q+ + + LP +DTGMG ER+A VLQ KT Sbjct: 181 DKSGAA-LVNAGRPEVIEIWNLVFIQYNRDAAGKLHPLPAKHVDTGMGFERIAAVLQGKT 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F +++ +TG Y E + + RV+ DH+R+ +F IADG P+NEGR Sbjct: 240 SNYDSDVFTPILKKIGDITGKTYGGSMESDTDMAMRVLADHIRTLAFAIADGGTPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RR + YAR LG EP + L LC MG +PEL++ + +IE+ +++E+E Sbjct: 300 GYVLRRILRRGVRYARQLGQNEPTLYKLTEVLCETMGDVFPELVERRQVIEQVIKAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLDRG+ + +GV L K ++++G AFKLYDT+G PLD+ + + GL+ +D Sbjct: 360 FLQTLDRGIEIFNGVTEKLKKSGGKVIDGADAFKLYDTYGFPLDLTRLMAEEIGLS-VDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++EQ+ RAR + E +++ + T+F GY+ L + +K Sbjct: 419 DGFLANMKEQKDRARKDRKEKSAVAEESGEWTIFAETLKTEFSGYETLEQKSRIARAKK- 477 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +G+K+ +V ++TPFYAE+GGQ GD+G Sbjct: 478 -------------------------------AGEKLLLVLEKTPFYAESGGQQGDSGEIE 506 Query: 536 GDGIRLQITDVQKKAEGIFVHH-------------AIVERGILRTEMSLVLTIDYQNRRQ 582 D I+D QK+ + + + + ++ + R Sbjct: 507 TDAFSFHISDTQKEGDLVLHIVDKITDKESGDAVAIENFDLEKLSSLEADAKVNAETRGA 566 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ATHLLH AL +LG HV Q GS + P+ LRFD +H + ++ + IE VN Sbjct: 567 TARNHTATHLLHEALREVLGEHVQQKGSLVGPERLRFDFSHFERVSEEAMAQIEQIVNAQ 626 Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I V + EDA GA A G KY D VRVV V +S CGGTH+ + Sbjct: 627 IRMAKAVKKHADVPFEDAKKMGALAFFGDKYGDFVRVVEVPG-----YSVEFCGGTHLDN 681 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRV 760 GEI LL IVSESSI +GIRR+EA+TG+ A KL++L L + V+ RV Sbjct: 682 IGEIGLLKIVSESSIASGIRRVEAVTGKVAEDLFRSDRRKLQALRDTLSAQSEDAVLERV 741 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 ++I EE ++L+ K +L+L L + + V ++ + + ELK + + Sbjct: 742 QKILEEKKELEKEVEKLRLELAASALDGLVKNAETLNGVKILAAEVKVSGADELKQLGEM 801 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPH 873 + K+ SG+++L E KAS++ V++D++ + A L AKV+ GGG GGRP+ Sbjct: 802 ARSKLGSGVLLLGAALGE-KASLVAAVSDDVIKSHKLQAGKLVGEVAKVVKGGG-GGRPN 859 Query: 874 MAQSGGPNGNKADQAIAGVASFL 896 +A +GG + K +AI + Sbjct: 860 LATAGGKDPQKLSEAIEKFKEIV 882 >gi|182625718|ref|ZP_02953487.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|177909120|gb|EDT71595.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] Length = 879 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + + Sbjct: 4 MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKVIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L +S + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ ++EQR RAR +E+ + + T+F GY L Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++S V + E E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +TD +K G FVH+ V G L+ + L++D R + NH+ATH+LH Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T+ M+ Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IVSES Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ A Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L +I V ++ + +VD L+ + D ++ K+ +GI++L Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +++ + T++ L + + + + A V+GGGG GGRP MAQ+GG N +A+ Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EKAKEVVE 875 >gi|110799076|ref|YP_696466.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|168211405|ref|ZP_02637030.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] gi|123148653|sp|Q0TPH4|SYA_CLOP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110673723|gb|ABG82710.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|170710656|gb|EDT22838.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] Length = 879 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + + Sbjct: 4 MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L +S + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ ++EQR RAR +E+ + + T+F GY L Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++S V + E E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 467 ------------LNSKVIVLGNNEEFKSELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +TD +K G FVH+ V G L+ + L++D R + NH+ATH+LH Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T+ M+ Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IVSES Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ A Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L +I V ++ + +VD L+ + D ++ K+ +GI++L Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +++ + T++ L + + + + A V+GGGG GGRP MAQ+GG N +A+ Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EKAKEVVE 875 >gi|18310762|ref|NP_562696.1| alanyl-tRNA synthetase [Clostridium perfringens str. 13] gi|168218241|ref|ZP_02643866.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239] gi|20532247|sp|Q8XJH6|SYA_CLOPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|18145443|dbj|BAB81486.1| alanine-tRNA ligase [Clostridium perfringens str. 13] gi|182379737|gb|EDT77216.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239] Length = 879 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + + Sbjct: 4 MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L +S + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ ++EQR RAR +E+ + + T+F GY L Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++S V + E E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +TD +K G FVH+ V G L+ + L++D R + NH+ATH+LH Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T+ M+ Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IVSES Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ A Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L +I V ++ + +VD L+ + D ++ K+ +GI++L Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +++ + T++ L + + + + A V+GGGG GGRP MAQ+GG N +A+ Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EKAKEVVE 875 >gi|330684847|gb|EGG96537.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU121] Length = 876 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 336/914 (36%), Positives = 508/914 (55%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+K+W + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDVEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGADFGKDDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I EQV+G Y + V +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKTYLQNIDQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVAEIMEPYYPNVKEKSEFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+G +S + ++ +NG AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLEEGLAILNGFISQAKEGNQEINGKDAFKLYDTYGFPIELTEELATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ +F +++QR RAR S + LK + F+GY+ Sbjct: 414 LT-VDMTTFEAEMQQQRDRARQARQNSQSMQVQSEV--LKNITTESHFVGYNTTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + ++Q GE V++A +G+ + + TPFYA +GGQ+ Sbjct: 467 -------------------QTELIHLIQNGEEVDKADTGETIYFMLKDTPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + +T+V K G +H ++ G + + +++ RR + NHSA Sbjct: 508 DKGTVSNDHFEIAVTEVTKAPNGQNLHKGTIQFGQVTKGAEVDASVNKDERRSIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + P+ LRFD +H +T E+ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEIWRGIDV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + MN ++A A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 RIQEMNIDEAKAMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVENTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L E+ + +KV + VV ++ +I +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQIQDEEK 742 Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + I + ++ + ++K ++S MD + K+Q Sbjct: 743 SLIKQLEQRDKEITSLKMGNIEEQVETINGLKVLATEVDVPNAKAIRSTMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L + + K S++ V +D D+ A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 VIILAS-NVDGKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 +++ + ++K Sbjct: 861 NITESLRFIKDYIK 874 >gi|288819149|ref|YP_003433497.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|288788549|dbj|BAI70296.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|308752733|gb|ADO46216.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] Length = 871 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 346/904 (38%), Positives = 520/904 (57%), Gaps = 49/904 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL FF+K GH + S+ L+P +DPTL+F N+GMVPFKN+F G EK Y Sbjct: 1 MFSTDEIRELFLSFFEKKGHVRVRSAPLVPESDPTLLFVNAGMVPFKNVFLGIEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKC+R GKHNDL++VG T+RHHTFFEMLGNFSFG YFK++AI+ AW+ +T+ L Sbjct: 61 AVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMLGNFSFGDYFKKQAIEYAWEFITQYLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LYITV++EDEE +++W+ GL +I + DNFW M +TGPCGP SEI FD+G Sbjct: 121 PEDKLYITVFEEDEETYRIWRDDIGLEEGRIWKRGEEDNFWQMGDTGPCGPSSEIHFDKG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E G Y+E+WNLVFMQ+ + K LPK +IDTGMGLER+A+VLQ+ Sbjct: 181 EGEEGER---------YLEVWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERIASVLQKT 231 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NY+ID+ + L+ E+++ +Y V RVI DHLR+ +F I+DG+LP+N GRG Sbjct: 232 KTNYEIDIIRPLVAFGEELSQKRYGESFEVDVALRVIADHLRAITFAISDGVLPSNVGRG 291 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV+RRI+RRA+ YA LG EP + + + M AYPEL + ++ ++ E+E+F Sbjct: 292 YVIRRILRRALRYAYKLGVQEPFLYRGIDLVVDIMKRAYPELETSIGFVKSVVKGEEEKF 351 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TL + +++ ++ ++G F LYDT+G PLD+++DI +GL +D+ Sbjct: 352 INTLKNAMPVVEEIIHKTLEEGRSSISGAQVFTLYDTYGFPLDMLEDIAREKGLY-VDMK 410 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + +E QR +AR + S + I+ LKE +QF+GYD + Sbjct: 411 GFEEQMELQREKARK-HFKITSKEVKPIYAHLKELGKTSQFVGYDQYQ------------ 457 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V AI++ G++V E G++ E+V ++TPFYAE GGQ+GD G G Sbjct: 458 -----------AETKVIAIIKDGQMVSELKEGEEGELVLEKTPFYAERGGQVGDKGFIRG 506 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G + D Q EG+ H + +G L+ + ID + R + NH+ATHLLH Sbjct: 507 EGAYFMVEDTQSPVEGVITHIGKLIKGSLKVMDQVHAIIDRERREDIRRNHTATHLLHAV 566 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS ++ LRFD TH + + L IE+ VN+ I QN V + Sbjct: 567 LRHVLGDHVRQAGSLVSDQYLRFDFTHYEALDWDRLSRIEELVNEHIRQNYEVSVEETDY 626 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI GA A+ KY+DRVRV++V G S LCGGTHV TG+I IVSESS+ Sbjct: 627 TKAIKEGAIAIFEEKYSDRVRVITV-----GEVSKELCGGTHVRRTGDIGYFKIVSESSV 681 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRI A TG+ A + L+ L+ L V Q ++ ++ + + ++ + A+ Sbjct: 682 GAGVRRIVAKTGRWAVEDAFREHRMLQELSISLGVKQEDIPDAIQRLERQLKEKEKEVAR 741 Query: 777 RK----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K Q+ + L I + ++D+++L++ D ++ ++ ++ + K Sbjct: 742 LKELLLEQMVQKQLKEELINGIRLYWGFFEDIDTEDLRNTADRIRSSSENCVVFFI-TKK 800 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 ++ S L+ ++++L+ + +A ++ + KVLGGGG GGR +AQ GG N +AI + Sbjct: 801 GERLSTLLALSKNLVPKLSAKEMIKEVGKVLGGGG-GGREDLAQGGGTNLQAVGKAIERL 859 Query: 893 ASFL 896 + Sbjct: 860 KDLI 863 >gi|313893025|ref|ZP_07826602.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313442378|gb|EFR60793.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 871 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 330/903 (36%), Positives = 494/903 (54%), Gaps = 55/903 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ GH L + SLIP NDP+L+ +GM P K FTG+ P + + Sbjct: 1 MKGNELRQAYLQFFESKGHLKLDTFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q C+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 61 TTSQTCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+TVY +D+EA+ W K G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 KNRLYVTVYPDDQEAYDTWHKDCGVEESHISRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL +I+A+ + G+ Y N V+ +VI DH R+ + LI+DG+LP+NEGR Sbjct: 234 CRTNFETDLIYPIIEATAKRAGVTYNENPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + RLLG + L+ + +G + + K ++ +++E+ER Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLVDVVVEILGPGIKSIAEKKDFVKRVVQNEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDH 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR RAR + + LK++ +LL Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE---------ELLEDESVKA----- 458 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V + + + ++ A G ++ ++ TPF+AE GGQLGDTG + Sbjct: 459 --------------SSVLMVGKGAKRLQTAADGDEITIIVRTTPFHAEGGGQLGDTGFIV 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVALEVDTNRRSAMARNHTATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG HV+Q GS +TPD LRFD TH P+T EL IE VN+ + + + M+ Sbjct: 565 ALKQILGDHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEVLKATDLAIAEMS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A GA AL G KY D VRVV V S LCGG+HV +T + + SE+ Sbjct: 625 MDEAKEKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFVGSFRLTSEAG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEAITG+ A ++ +A LK V R+ ++ E ++ Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELE 739 Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 + + +++ + I DV F++ + EL+ + D ++ SG++++ Sbjct: 740 QIRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++D++ + A ++ + +A+ + GG GGGRP MAQ+GG K QA Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMQA 858 Query: 889 IAG 891 + Sbjct: 859 LKA 861 >gi|17229910|ref|NP_486458.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120] gi|20532251|sp|Q8YUD4|SYA_ANASP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|17131510|dbj|BAB74117.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120] Length = 880 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 332/906 (36%), Positives = 502/906 (55%), Gaps = 49/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IRT FL+F+ + GH++L S+SL+P DPT++ T +GM+PFK IF GQ P ++ T Sbjct: 9 SGNEIRTRFLDFYAQRGHQILASASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RH TFFEMLGNFSFG YFKE+AI W++ T+ F L + Sbjct: 68 TSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EA+ +W+ G++ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 124 ERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFMQ+ + L +IDTGMGLER+ +LQ N Sbjct: 184 -RGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ G+ Y ++ + +VI DH+RS +IAD I +N GRGY Sbjct: 243 NYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + RL+G + + + SAYP + Q + +I+ L E+ F Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTLDRG LL +++ + K +++G AF LYDTHG PL++ Q+I L +D+ Sbjct: 363 KTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGFPLELTQEIAEENNLT-VDVEG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + +E Q+ R + T + L E AT+FIGY Sbjct: 422 FQKQMEIQQQGGRGAHETIDL-TVQGSLDKLAEHIHATEFIGYSQ--------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V+ ++ G + EEA +G +V++V D+TPFYAE+GGQ+GD G G Sbjct: 466 --------ATATAKVEVLLVDGVVQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISG- 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + KK FVH +ERG LR ++ ID RR+ NH+ATHLL AL Sbjct: 517 DGIVVQVEDVKKESDFFVHFGRIERGTLRVGDNVTAQIDRAGRRRAQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 TI+ +SQ GS ++ D LRFD + +T E++ +E+ +N IA+ ++ Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY D VRV+ S LCGGTHVS+T EI + I+SE+ + Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFPG-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R + Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + D + + VD + LKS + L +KI +G ++L + + Sbjct: 752 KGQLAIAKSDSLLQTADTCGDYKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLGSVPE 811 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + ++ + A AK+ GGGG GGRP++AQ+GG + +K A+ Sbjct: 812 ADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGG-GGRPNLAQAGGRDASKLPAALEQ 870 Query: 892 VASFLK 897 S LK Sbjct: 871 AQSELK 876 >gi|110802307|ref|YP_699065.1| alanyl-tRNA synthetase [Clostridium perfringens SM101] gi|122956614|sp|Q0SS42|SYA_CLOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110682808|gb|ABG86178.1| alanine--tRNA ligase [Clostridium perfringens SM101] Length = 879 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 336/908 (37%), Positives = 517/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + + Sbjct: 4 MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L +S + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ ++EQR RAR +E+ + + T+F GY L Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++S V + E E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +TD +K G FVH+ V G L+ + L++D R + NH+ATH+LH Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T+ M+ Sbjct: 575 ALKEILGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IVSES Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ A Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L +I V ++ + +VD L+ + D ++ K+ +GI++L Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +++ + T++ L + + + + A V+GGGG GGRP MAQ+GG N +A+ Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EKAKEVVE 875 >gi|168207852|ref|ZP_02633857.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] gi|170660832|gb|EDT13515.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] Length = 879 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + + Sbjct: 4 MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L +S + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ ++EQR RAR +E+ + + T+F GY L Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++S V + E E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +TD +K G FVH+ V G L+ + L++D R + NH+ATH+LH Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T+ M+ Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IVSES Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ A Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L +I V ++ + +VD L+ + D ++ K+ +GI++L Sbjct: 750 ELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLASG 809 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +++ + T++ L + + + + A V+GGGG GGRP MAQ+GG N +A+ Sbjct: 810 -NGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EKAKEVVE 875 >gi|315640863|ref|ZP_07895962.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952] gi|315483402|gb|EFU73899.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952] Length = 880 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 330/917 (35%), Positives = 497/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQVRQLFLDFFRSKGHTVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFKE AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKEDAIHFAWEFLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL+ + II I DNFW + GP GP SEIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWSEEIGLTPEHIIEI--EDNFWDIG-AGPSGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGPEYLDIAEDDPENFPGGENERYLEIWNLVFSEFNHKPDNTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q N++ DLF +I + E+++ V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQNAPTNFETDLFLPIIHSVEELSQGVHYGDSLQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE+++ + IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGQKLGIQQAFLYKLVPVVGHIMESYYPEVLKQQAFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ L G FKLYDT+G P+++ +++ Sbjct: 354 KVVRNEEERFHETINEGLAILNEVIEDVKANNRTTLAGQAIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D + F + ++ QR RARA S + L + + ++GY L Sbjct: 414 DAGLK-VDHVGFEKEMQAQRDRARAGRSKEQSMGVQSTL--LTDIKVESDYVGYSDLE-- 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+ V++ G +++F +TPFYAE GG Sbjct: 469 ---------------------AKSALVLIISDDAFVKKIDEG-SAQLIFAKTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ DTG + + KKA H + +G L L ++ + Sbjct: 507 QVADTGIVVNSEGMIVADVTNVKKAPNGQFLHTVTVKGQLIEGTEYFLQVNTAKHNKTIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATH+LH AL +LGSH +Q GS + P+ LRFD TH +T EL +E VN+ I + Sbjct: 567 NHTATHMLHKALKEVLGSHANQAGSLVAPEHLRFDFTHFGQVTPEELVKMEQIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPVVT + + A A GA AL G KY VRVV++ S LCGG HV +T +I Sbjct: 627 ALPVVTVETDIDSAKAMGAMALFGEKYGHDVRVVNIA-----DWSIELCGGNHVKNTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSES I AG+RRIEA+T + A Q+E+LK +AS +K Q VV +V+++ Sbjct: 682 GLFKIVSESGIGAGVRRIEAVTSKEAYLLAREQEEQLKQVASLVKSPQLKEVVSKVDQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ ++ Q + +L + S ++ V +++ ++ D +L+ + D ++K Sbjct: 742 QQLKEAQKENDTLSTKLANQQASDIFTDIKEVNGVTYVASQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L + EK ++ + + + + A +L + A +GGGG GGRP MAQ+GG Sbjct: 802 AISDVLVLATAADEKVNLLVAMSEQAIQKGYKAGELVKAIAPKVGGGG-GGRPDMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N A+A V+ +L Sbjct: 861 KNPAGIPDALAAVSEWL 877 >gi|300854401|ref|YP_003779385.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] gi|300434516|gb|ADK14283.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] Length = 879 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 338/908 (37%), Positives = 516/908 (56%), Gaps = 50/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+K GH +PS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNQIREMYLSFFEKKGHLRMPSFSLVPNNDKSLLLINAGMAPLKPYFTGLKVPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFKE I AW+ T + + Sbjct: 66 CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEVIPWAWEFTTDVLKIPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y +D+EA+ +W K + + +I R+ DNFW GPCGPCSEI +D+GE Sbjct: 122 KLYVTIYLDDDEAYDIWVKKTDIDPSRIFRLGKEDNFWEHG-AGPCGPCSEIHYDRGEGK 180 Query: 184 --PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + + +R +E WNLVF QF++ + L +IDTGMGLERMAT++Q K Sbjct: 181 ITTVDEFVKAGDSDRVVEFWNLVFTQFDKDEEGNYNKLSHPNIDTGMGLERMATIMQGKN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +++D +++ + G++Y N ++ R+I DH+RS +F+I+DGILP+NEGRGY Sbjct: 241 SIFEVDTINSILKEVSNMAGIEYSKNEKSDMSMRIITDHVRSVTFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + + LG E + L + YPEL + + I++ ++ E+ERF Sbjct: 301 VLRRLLRRAAKHGKSLGIKEGFLYKLTEVVINNSCGNYPELKEKEEYIKKIIKLEEERFD 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L+ +S L K+ +L G+ AFKLYDT+G P+++ Q+IL +G+ +D+ Sbjct: 361 ETIDSGMQILNDFISDLKSNKNTVLEGEKAFKLYDTYGFPIELTQEILEEKGMT-VDLDE 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FNQ +++QR RAR+ E + T F GYD L+ Sbjct: 420 FNQNMKDQRERARSARAETNYMGAENTVLNKIPFEINTVFEGYDRLKS------------ 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 SS VK IV+ E V G++ ++ TPFYAE GGQ+GD G + Sbjct: 468 -----------SSKVKLIVKDEEFVSVLNEGEEGVIITANTPFYAEMGGQVGDKGTVFSE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + ++ D +K G +H V G + E ++ L++D R + NH+ATHLL AL Sbjct: 517 NFKGEVLDCKKNLAGKVLHFVKVISGSINLEDTIELSVDEDRRSNIRKNHTATHLLDSAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG V Q+GS + LRFD H + ++ +L++IE+ VN+ I + PV T IM+ E Sbjct: 577 KQVLGEQVHQSGSYVDESRLRFDFNHFEAVSYEKLRNIENLVNESIMKVYPVKTTIMSLE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A SGA AL KY D VRVVSV G S LCGGTHVS++GEI L I SE+ I Sbjct: 637 EAKESGAIALFDNKYKDEVRVVSV-----GNFSKELCGGTHVSNSGEIGLFKITSETGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+TG+ A ++ + + L+ ++S LK S+ +V +++ + K + Sbjct: 692 AGIRRIEAVTGKMAAEYVNSKSDILREISSKLKCSEKEIVHKLD-LQSSELKELEKEIEE 750 Query: 778 KLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 S KI ++ + I+ +VD L+ + D ++ K ++ ++L+G S Sbjct: 751 LKLKVAGSAEDDILKSVEKIGGIDLFTGILKDVDGNSLRELADKIRSKSEN-CVVLLGSS 809 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K ++ + T++ + + + + A + GGGG GGRP MAQ+GG +K +AI Sbjct: 810 IGGKVQLVAMATKEAVKSGIHCGKIIKEVAAITGGGG-GGRPDMAQAGGRLPDKLQEAIG 868 Query: 891 GVASFLKK 898 + + K Sbjct: 869 KSNTIITK 876 >gi|326800500|ref|YP_004318319.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21] gi|326551264|gb|ADZ79649.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21] Length = 871 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 485/917 (52%), Gaps = 69/917 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL FF+ GHE++PS+ ++ NDPTLMFTN+GM FK +F G+ Y V Sbjct: 1 MTSREIRQAFLNFFKSKGHEIVPSAPIVVKNDPTLMFTNAGMNQFKELFLGEAPIKYSRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 Q+C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT + +D Sbjct: 61 VDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTNVYKID 120 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ ED EA+ WK+ + + +I++ DNFW M ETGPCGPCS Sbjct: 121 KDRLYVTVFEGDSEEGLPEDAEAYGYWKE--HIDSTRILKGNKKDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + IEIWN VFMQF + LP +DTGMG Sbjct: 179 EIHVDCRSDEERRMIDGSTLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAKHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ VLQ KT+NYD D+F+ LIQ + ++Y + RV+ DH+R+ SF IA Sbjct: 239 FERLVRVLQSKTSNYDTDIFQPLIQLIAKAAKVQYGENEQQDIAMRVMADHIRAISFAIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L + EP + L+ L + + EL + + Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKEPFLNTLVIPLAQQFEGVFDELYKQQDF 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++ + E+ F +TL G+ + + +++GD AF+LYDT+G P+D+ + Sbjct: 359 VQKVVLEEELSFLRTLVTGIQRFESYHTD---QGLVSGDFAFELYDTYGFPIDLTDLMAR 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G +D+ F AL +Q+ R+RA + + + G T F+GYD L Sbjct: 416 EKGWK-VDMPGFENALNKQKERSRAA------TAIDTGDWVTVNEDGETHFVGYDNLATE 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RKV A + ++V QTPFYAE GG Sbjct: 469 TKILKYRKV----------------------------SAKGKIQYQLVLSQTPFYAEGGG 500 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GDTG I + + I V K E + H + E + RR + N Sbjct: 501 QVGDTGILIHETSKETIQIVDTKKENGLIIH-FSDELPSHLEGVFFAKVAEDRRRDIQSN 559 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL +LG HV+Q GS ++ + LRFD +H ++ EL+ +E VN I +N Sbjct: 560 HSATHLLHAALKQVLGEHVNQKGSLVSEEVLRFDFSHFAKVSDEELRRVEQVVNAKIREN 619 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L + R + DAI G AL G KY D VRV+ + S LCGGTHV TG I Sbjct: 620 LALDERRNVPYNDAIDMGVTALFGEKYGDFVRVIIFDEN----FSKELCGGTHVQYTGNI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I+SE ++ AG+RRIEAITG+RA + QDE + L + LK ++ + + + Sbjct: 676 GFFKILSEGAVAAGVRRIEAITGRRAEEIIDRQDELINELKNLLK-HPKDLSAAITGLLQ 734 Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E KL+ K ++ + I V F+ + ++ +K++ A++K I Sbjct: 735 ENSKLKKEVEKSLVEKAQQLRQVLVEKAIDINGVRFIGEQVELPNADAVKNLAFAIKKAI 794 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +G+ +++ + K ++ +V+++DL++R +A + R AK + GG GGG+P A +GG Sbjct: 795 DNGLFLVLAADFDGKPNLTVVLSDDLVNRGLDAGKIVRELAKEIKGG-GGGQPFYATAGG 853 Query: 880 PNGNKADQAIAGVASFL 896 + + A+ SF+ Sbjct: 854 KDSSGLTVALEKAKSFV 870 >gi|41018232|sp|Q8FT23|SYA_COREF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 890 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 330/923 (35%), Positives = 494/923 (53%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MQTHEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVE 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSE Sbjct: 116 EGGYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+G G G + + RY+EIWNLVFM+FE+ + + LPK +IDTGM Sbjct: 176 IYYDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G+ER+A +LQ N Y+ DL + +I +E +TG Y +N + RVI DH R+ LI Sbjct: 235 GVERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + + Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F KTL G L + + + G AF L+DT+G P+D+ ++ Sbjct: 355 ILRVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D+ F + EQRSRA+A S G + + T F G++ L Sbjct: 415 AAEAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELE 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V ++ G + EA GQ+VEV+ DQ+P YAE+ Sbjct: 474 S-----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAES 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQLGD G + + I DVQK + ++VH A+V G L +V +D Q R Sbjct: 511 GGQLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATHL+H AL +LG Q GS P LRFD ++ +T +L I+ N+ + Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + + Sbjct: 631 TDWAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + ++ ESSI +G+RRIEA +G + ++L + +SL+S LK ++ R+ ++ Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLL 746 Query: 765 EEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 ++ + + A +R+L E+ +I + + + +D+ +L+++ L+ Sbjct: 747 DKLKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRD 806 Query: 819 KI--QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 K+ G++++ S++ K + T+ + R ++ +L +L + G GGG+P M Sbjct: 807 KLSNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDM 865 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ G + + D A V + L+ Sbjct: 866 AQGSGSDIDGLDAAFNAVRAELE 888 >gi|300784619|ref|YP_003764910.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32] gi|299794133|gb|ADJ44508.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32] Length = 886 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 331/919 (36%), Positives = 509/919 (55%), Gaps = 61/919 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL F+ GH +PS+ LI +DP L+F N+GMV FK F G+ P Y Sbjct: 1 MDTHEITDRFLRHFEGRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK Sbjct: 60 TSVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIEAAWELITKPQTEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD R++ TVY++D EA LW+K++GL ++I DN+W M GP GPCSEI+ Sbjct: 116 GFGLDPERIWATVYNDDSEAAGLWRKLTGLPGERIQARDGKDNYWDMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------KQERFILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ + + + LPK +IDTGMG+ Sbjct: 176 YDRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDLSPKLGHKPIGELPKKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+AT+LQ N Y+ DL + +I +E+ +G +Y + V RVI DH R+ LI D Sbjct: 235 ERVATILQGVENVYETDLVRPVIGRAEEFSGRRYGSNHADDVRFRVIADHARTGVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N+GRGYVLRR++RR + RLLG EP++ + MG YPEL+ I Sbjct: 295 GVTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVRDTMGPTYPELVSGFDRIN 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E +R E+E F TL G + D + ++L GD AF+L+DT+G P+D+ ++ Sbjct: 355 EVVRIEEEAFLSTLTSGSRIFDMAAEETKRGGGDVLAGDKAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL +D F + EQR+RA+A + +G + + + E++G T+F+GY L+ Sbjct: 415 EQGLT-VDEEGFRTLMNEQRTRAKADAAARKTGHGDLSEYRKVLEQHGETEFLGYTDLQ- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + V A+++ G+ V +G+K E+V D+TPFYAE+G Sbjct: 473 ----------------------AEAKVVALLEDGQPVRSVSAGKKAELVLDRTPFYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ DTG +GDG+ L++ DVQK G++VH V G + + + ++D R + Sbjct: 511 GQVADTGVLLGDGVELKVLDVQKIVPGLYVHRVEVVDGEIGLDSKVTGSVDAHRRLSIER 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHL+H A+ G +Q GS +P +RFD T +++ L +E VND + Sbjct: 571 SHSATHLVHAAVRGAYGKRAAQAGSLNSPGRMRFDFTTPGSVSADVLTEVEQEVNDYLQT 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+ V + ++ A+ GA AL G KY + VRVV + G +S LCGGTHV G++ Sbjct: 631 NVEVQSFTTTKDKALELGAVALFGEKYGNDVRVVDM-----GDYSRELCGGTHVDRIGQL 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ +VS++SI +G+ R+EA+ G A ++ + + LA+ KV + GR++++ Sbjct: 686 GLVKLVSDASIGSGVHRVEALVGTDALKYVRKEQLLVSQLANTFKVPSDQLPGRIDDVLT 745 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + + A+ K Q + +I V ++ ++ +VD L+++ ++ ++ Sbjct: 746 RLKNAEKEIAQLKTQQVLGSAGALVDKAQEIGGVTVVAEVVPDVDGNGLRALASDIRGRL 805 Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 G++ L + E K S ++ T+ ++ A L A+ + GG GGG+P MAQ Sbjct: 806 GTRPGVVALFSPAGE-KLSFVVATTKAAQEKGIAAGKLVPSFAEKI-GGRGGGKPDMAQG 863 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N A +A+ + S + Sbjct: 864 GGTNPAGAAEAVTALRSAI 882 >gi|160892619|ref|ZP_02073409.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50] gi|156865660|gb|EDO59091.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50] Length = 888 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 349/907 (38%), Positives = 511/907 (56%), Gaps = 40/907 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SLIP ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLKMNSFSLIPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK LD+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWSWEFLTKVVGLDEN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y++D+EAF +W K G++ +KI R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYEDDDEAFDIWNKEIGIAPEKIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGHNNYTELVQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ G+KY + V+ RVI DH+RS +F+ +DGILP+NEGRGY Sbjct: 241 SIFDVDTIKALRDKVCEMAGVKYMEDEKTDVSIRVITDHIRSVTFMASDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + AYPEL + K I + +E+E F Sbjct: 301 VLRRLLRRAARHGRLLGIEGRFLAELSKTVIEVSKDAYPELEEKKAHIFTCINTEEENFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L+G + L ++LNG+ AFKLYDT+G PLD+ ++IL +G +D Sbjct: 361 KTIDQGLSILNGFVEELNNSGKKVLNGENAFKLYDTYGFPLDLTKEILEEKG-IEVDTEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN+A+++QR AR + + + ++FIGYD + S + Sbjct: 420 FNKAMDKQRETARKSRKVSNYMGADSTIYEDIDTALTSKFIGYDKVEASSNIIAITAEYK 479 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + E+V+ G ++ +TPFYA GGQ+GD G + Sbjct: 480 EGDQVTS---------------ELVDVISEGTNGSIITAETPFYATMGGQIGDAGVIETE 524 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 R + D K A H VE G L+ + L++ R + NHSATHLL AL Sbjct: 525 SGRFIVKDTIKVAGDKIAHLGYVESGELKNGSTAKLSVTADRRALICKNHSATHLLQKAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS ++ D LRFD TH + +T E+ +E VN+ I ++L V T +M+ E Sbjct: 585 KMVLGDHVEQAGSYVSEDRLRFDFTHFQAMTPEEIAKVEAIVNEQIDKDLKVKTEVMSIE 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA +GA AL G KY ++VRVVS+ S CGGTHV +TG I I+SE + Sbjct: 645 DAKKTGAMALFGDKYGEKVRVVSM-----DDFSVEFCGGTHVPNTGVIGTFKIISEMGVA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T A ++ +++LK+ A K + ++E + E + L ++K Sbjct: 700 AGVRRIEALTSVGAFNYYKEMEDELKAAAKAAKAEPAKLAEKIETMLAEIKALTSENSKL 759 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L I V ++ + + D L+++ D + K+ + +I+L K Sbjct: 760 KDKLAKNSAGDALADAIDINGVKVLATSVEDTDMNALRNLGDDFKNKLGTSVIVLASA-K 818 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ + T+D + + +A ++ + SA ++GGGG GGRP+MAQ+GG N A+A Sbjct: 819 DGKVNLIAMATDDAVKKGAHAGNIIKASAALVGGGG-GGRPNMAQAGGKNPAGIADALAK 877 Query: 892 VASFLKK 898 K+ Sbjct: 878 AVETAKE 884 >gi|315658110|ref|ZP_07910982.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590] gi|315496439|gb|EFU84762.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590] Length = 876 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 330/915 (36%), Positives = 498/915 (54%), Gaps = 57/915 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ LW GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMAMEPDKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAFGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF +I+ E+V+G KY V +VI DH+R+ +F I+DG Sbjct: 234 MASVAQNVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL GL +LD +++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLQEGLSILDQLIAKAKLTTKEINGSDAFKLYDTYGFPIELTEEIATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D+ +F +++QR RAR S + LK ++F+GY+ Sbjct: 414 IT-VDMETFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITTKSKFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + ++ G+ V A +G + V +TPFYA +GGQ+ Sbjct: 467 -------------------QTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + + +V K G +H ++ G + + ++ RR + NHSA Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTIQFGHVTVNSHVDANVNKDERRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + + LRFD +H P+T+ E++ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M +A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNMAP-----FSLELCGGIHVQNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 I+SES AG+RRIEA+TG+ A +L G K ++LKV + V+ +V ++ EE + Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQRKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + +R L++ + +I ++ + + K ++ MD + K+Q Sbjct: 743 HVNKQLEQRNKEITTLKMGNIEDQVEEINGFKVLATQVDIANPKAIRETMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L+ E K S++ V + + A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLKK 898 +++ + ++KK Sbjct: 861 NITESLRFIKDYIKK 875 >gi|329961902|ref|ZP_08299915.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057] gi|328531125|gb|EGF57975.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057] Length = 873 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 330/919 (35%), Positives = 483/919 (52%), Gaps = 73/919 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRESFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y + RV+ DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTTYGNNQQQDIAMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELIAQKD 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LL+ + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +LKE G T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D+TPFYAE Sbjct: 471 EYETGILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETVEVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSCTHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AGIRRIEA TG R L + ++ L + + ++ + + Sbjct: 674 GNIGMVKIVSESSVAAGIRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSAAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L S +I V + + V + +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKEKLLQSVQEINGVKVIKFCSAMVPADAVKNIAFQLR 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A L + +AK++ GG GGG+PH A Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGALVKEAAKLIQGG-GGGQPHFAT 851 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 852 AGGKNPDGIKAAVDKVIEL 870 >gi|307693255|ref|ZP_07635492.1| alanyl-tRNA synthetase [Ruminococcaceae bacterium D16] Length = 890 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 333/912 (36%), Positives = 511/912 (56%), Gaps = 54/912 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+++P VTT Sbjct: 9 LNELREMFLSFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPRHRVTT 68 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKC+R G D++N+G+T RH T+FEMLGNFSFG YFK+ AI AW+ LT + LD Sbjct: 69 CQKCIRTG----DIENIGKTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSKEWVGLD 124 Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY +V+ D+EAF++W + G+ A++I + DNFW +GPCGPCSEI Sbjct: 125 PERLYPSVFAGNETTPADDEAFRIWNEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 ++D+GE G PG + +RYIE+WN+VF QF+ + L + +IDTGMGLER+ Sbjct: 184 YYDRGEQWGCGKPGCTVGCDCDRYIEVWNVVFSQFDNDGENHYTELKQKNIDTGMGLERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGIL 291 A V Q + +D+D ++ + ++TG Y ++ V+ RVI DH+RS++F+I DG+L Sbjct: 244 ACVCQGVPSLFDVDTVMNITRKVTEITGASYGQSHATDVSLRVITDHIRSATFMICDGVL 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA + +LLG +P + + + E YPEL + + I + + Sbjct: 304 PSNEGRGYVLRRLLRRAARHGKLLGVNDPFLYTVCDTVIHENEGHYPELRERQDYITKVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 R E+E F KT+D GL + + +LS + +G AFKLYDT+G P+D+ +++ +G Sbjct: 364 RVEEENFAKTIDGGLKIFNDMLSEHKAKGESTFSGADAFKLYDTYGFPIDLTLEMVEEQG 423 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F++ ++EQR RAR LG + + T+F+GYD Sbjct: 424 MK-LDEAEFHKQMDEQRQRARKAREALGDLGWAGV--EFGKDVPETEFVGYDHTAIDD-- 478 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V A+V + E EE + G + VV D+TPFYAE GGQ+ Sbjct: 479 --------------------AKVVALVVENEQAEEVMPGVEAIVVLDKTPFYAEMGGQVA 518 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G DG+ Q+TDVQK G ++H + +G+L+ ++ ID + R+ + HSA Sbjct: 519 DHGTISADGVTFQVTDVQKNKGGKYMHTGKLTQGVLKVGDTVSAAIDVKRRKAVMRAHSA 578 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL T+LG HV Q GS + D LRFD TH +T+ EL + VN+ + + + Sbjct: 579 THLLDKALRTVLGDHVHQAGSLVEEDRLRFDFTHFSALTAEELAKVSAMVNEAVLEGYDI 638 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T ++ E+A GA AL G KY D VRVV + +S CGGTH+ +T ++ + + Sbjct: 639 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDMGE----GYSVEFCGGTHLDNTAKVGVFH 694 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SE S+ +G+RRIEA TGQ + + E L A+ LK G + + E+ E + Sbjct: 695 ISSEFSVASGVRRIEATTGQASLDVMNRNQEMLFQAAAALKAKPGELREKAEQTMLEVKT 754 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + K K + + + ++ ++ ++ I++ D+ +L+ + D L+ K + + Sbjct: 755 LHQMVEKFKAKESAGEADRFLFGARQVGELKVLTATIADADANKLRQMGDMLRDKAPNVV 814 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ EK + + E + A ++ + + GG GGG+P A GG + K Sbjct: 815 AVLATVNGEKITFLAVCGKEAVAKGIKAGEIIKNVTAIC-GGKGGGKPDSAMGGGTDILK 873 Query: 885 ADQAIAGVASFL 896 D A+A + F+ Sbjct: 874 LDDALASIDDFV 885 >gi|222527366|ref|YP_002571837.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] gi|222451245|gb|ACM55511.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] Length = 894 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 357/918 (38%), Positives = 514/918 (55%), Gaps = 57/918 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL FF ++GH +PSSSL+ +DPTL+F NSGMV FK++F G+E+ Y Sbjct: 5 TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI LAW LLT+EF L Sbjct: 65 TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124 Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL+ TV+ D+EA LW G +++R DNFW M +TGPCGPCSEI Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIAQ-GADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G+ + G + + Y+EIWN VFMQ+++ LP+ S+DTGMGLERMA Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q + Y+ DLF +I + G + + +R I DH R+ +FLIADG+LP Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GR YVLRRI+RRA R +G+ P + ++ ++ +MG AYPEL++ + LI Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ +F +TL GL L GV+ ++++ G+ AF L DT+G PLD+ Q I +GL Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + A+ EQR+R+RA + G + +W L A+ F GY+ L Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERLSDR----- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V ++ G+ + A +G+ V++V D TPFYAE+GGQ+GDT Sbjct: 472 ------------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +G +QI D ++ G+ VH+ V G + + T+D R + NH+ATH Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L AL +LG H +Q GS + PD LRFD TH+K + EL+ +E +N + + V Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGE 704 I +DA+A GA AL G KY D VR+V++ E E S LCGGTHV+ TGE Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + IVSE SI +GIRRIEA+TG+ A + Q + L+ LA+ + ++ R++ + Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINAQPAQLLERIDALL 753 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+R+ + + +L E L +A V ++ + L+ + + L+ K Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + +I+L G K +L +VT DL+ R NAV L + A ++GGGG GGRP +AQ+G Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALVGGGG-GGRPEIAQAG 871 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K AI L Sbjct: 872 GRHPDKLAAAIGAAVEVL 889 >gi|163849369|ref|YP_001637413.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] gi|205830020|sp|A9WCR2|SYA_CHLAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163670658|gb|ABY37024.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] Length = 894 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 357/918 (38%), Positives = 514/918 (55%), Gaps = 57/918 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL FF ++GH +PSSSL+ +DPTL+F NSGMV FK++F G+E+ Y Sbjct: 5 TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI LAW LLT+EF L Sbjct: 65 TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124 Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL+ TV+ D+EA LW G +++R DNFW M +TGPCGPCSEI Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIAQ-GADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G+ + G + + Y+EIWN VFMQ+++ LP+ S+DTGMGLERMA Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q + Y+ DLF +I + G + + +R I DH R+ +FLIADG+LP Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GR YVLRRI+RRA R +G+ P + ++ ++ +MG AYPEL++ + LI Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ +F +TL GL L GV+ ++++ G+ AF L DT+G PLD+ Q I +GL Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + A+ EQR+R+RA + G + +W L A+ F GY+ L Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERLSDR----- 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V ++ G+ + A +G+ V++V D TPFYAE+GGQ+GDT Sbjct: 472 ------------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +G +QI D ++ G+ VH+ V G + + T+D R + NH+ATH Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L AL +LG H +Q GS + PD LRFD TH+K + EL+ +E +N + + V Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGE 704 I +DA+A GA AL G KY D VR+V++ E E S LCGGTHV+ TGE Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + IVSE SI +GIRRIEA+TG+ A + Q + L+ LA+ + ++ R++ + Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINTQPAQLLERIDALL 753 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+R+ + + +L E L +A V ++ + L+ + + L+ K Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + +I+L G K +L +VT DL+ R NAV L + A ++GGGG GGRP +AQ+G Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALVGGGG-GGRPEIAQAG 871 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K AI L Sbjct: 872 GRHPDKLAAAIGAAVEVL 889 >gi|70726302|ref|YP_253216.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] gi|83305859|sp|Q4L6W5|SYA_STAHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68447026|dbj|BAE04610.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 329/915 (35%), Positives = 498/915 (54%), Gaps = 57/915 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI AW+ LT Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEN 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+++W GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDSEAYRIWNDEIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G+ P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGDEYGQDDPSEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF +I E+V KY + + +VI DH+R+ +F IADG Sbjct: 234 MASVSQNVRTNYETDLFMPIINEVEKVADKKYLVNNEHDIAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL GL +L+ +L+ + +NG AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLQEGLAILNNLLAKAKSSNNEINGSDAFKLYDTYGFPIELTEELASQEN 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D+ +F + +++QR+RAR S + LK ++F+GY+ Sbjct: 414 -ISVDMATFEKEMDQQRTRAREARQSSQSMQIQSEV--LKNITTESKFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + ++ GE VE A G+ V + +TPFYA +GGQ+ Sbjct: 467 -------------------QTTLTDLIYNGEKVESAEPGETVYFILKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + +++T+V K G +H +++ G + + +++ R+ + NHSA Sbjct: 508 DKGTVGNENFEIEVTEVTKAPNGQNLHQGVIQFGQVTINSDVDASVNRDERKDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + + LRFD +H P+T E+ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGEHVNQAGSLVESERLRFDFSHFGPMTQDEIDQVERRVNEEIWRGISV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M +A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMPINEAKQMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 I+SES AG+RRIEA TG+ A HL K S+ +KV N V ++ ++ EE + Sbjct: 683 IISESGTGAGVRRIEAFTGKSAFLHLEDIQNKFNSIKDQVKVKSDNQVFDKIVQLQEEEK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +R L++ + +I ++ + ++KE++ MD + K Q Sbjct: 743 NLHKQLEQRNKEITSLKMGNIEDQIEEINGFKVLATEVEVSNAKEIRQTMDDFKSKQQDA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L E K S++ V ++ D+ A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILASDLGE-KVSLIATVPKEQTDKIKAGDIIKNMAPLV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLKK 898 +A+ + ++KK Sbjct: 861 NISEALRFIKDYIKK 875 >gi|169343614|ref|ZP_02864613.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] gi|169298174|gb|EDS80264.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] Length = 879 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 333/908 (36%), Positives = 514/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + + Sbjct: 4 MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L +S + +++L+G AFKLYDT+G PL++ Q+IL + +DI Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEK-CLELDI 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ ++EQR RAR +E+ + + T+F GY L Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +S V + E E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 467 ------------FNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +TD +K G FVH+ V G L+ + L++D R + NH+ATH+LH Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T+ M+ Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IVSES Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ A Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L +I V ++ + +VD L+ + D ++ K+ +GI++L Sbjct: 750 ELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLASG 809 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +++ + T++ L + + + + A V+GGGG GGRP MAQ+GG N +A+ Sbjct: 810 -NGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EKAKEVVE 875 >gi|168214257|ref|ZP_02639882.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] gi|170714273|gb|EDT26455.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] Length = 879 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 335/908 (36%), Positives = 516/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + + Sbjct: 4 MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L +S + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ ++EQR RAR +E+ + + T+F GY L Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++S V + E E G+ ++ D+TPFYAE GGQ+GD G Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEDGFLLTDKTPFYAEMGGQVGDRGNIT 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +TD +K G FVH+ V G L+ + L++D R + NH+ATH+LH Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T+ M+ Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IVSES Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ A Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L +I V ++ + +VD L+ + D ++ K+ +GI++L Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLSDKVRNKLNNGIVVLAS- 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K +++ + T++ L + + + + A V+GGGG GGRP MAQ+GG N +A+ Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EKAKEVVE 875 >gi|189468166|ref|ZP_03016951.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM 17393] gi|189436430|gb|EDV05415.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM 17393] Length = 872 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 330/919 (35%), Positives = 488/919 (53%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEYLVEVLKI 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAAAFW--EQHLPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRPEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTAYGKDNQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +LKE+ T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKER--TTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D + R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPAHPEAPMMACVDTEKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + EDA GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R + ++ LK L + + ++ G + + Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAP-DLAGTIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ + K E L + +I + + + ++ +K++ L+ Sbjct: 733 YIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVIKICAP-IPAESIKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 851 AGGKNIDGLNAAIEKVLEL 869 >gi|256962036|ref|ZP_05566207.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96] gi|293383058|ref|ZP_06628976.1| alanine--tRNA ligase [Enterococcus faecalis R712] gi|293388219|ref|ZP_06632740.1| alanine--tRNA ligase [Enterococcus faecalis S613] gi|312907353|ref|ZP_07766344.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|312909969|ref|ZP_07768817.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] gi|256952532|gb|EEU69164.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96] gi|291079723|gb|EFE17087.1| alanine--tRNA ligase [Enterococcus faecalis R712] gi|291082403|gb|EFE19366.1| alanine--tRNA ligase [Enterococcus faecalis S613] gi|310626381|gb|EFQ09664.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|311289927|gb|EFQ68483.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] Length = 880 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 345/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVG--DNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + + V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A + GGGGGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKV-DGGGGGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|289550615|ref|YP_003471519.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] gi|289180147|gb|ADC87392.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] Length = 876 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 331/915 (36%), Positives = 498/915 (54%), Gaps = 57/915 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ LW GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMAMEPDKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAFGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF +I+ E+V+G KY V +VI DH+R+ +F I+DG Sbjct: 234 MASVAQNVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL GL +LD +++ +NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLQEGLSILDQLIAKAKLTTKEINGSDAFKLYDTYGFPIELTEEIATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D+ +F +++QR RAR S + LK ++F+GY+ Sbjct: 414 IT-VDMETFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITTKSKFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + ++ G+ V A +G + V +TPFYA +GGQ+ Sbjct: 467 -------------------QTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + + +V K G +H V+ G + + ++ RR + NHSA Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTVQFGHVTVNSHVDANVNKDERRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + + LRFD +H P+T+ E++ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M +A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNMAP-----FSLELCGGIHVQNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 I+SES AG+RRIEA+TG+ A +L G K ++LKV + V+ +V ++ EE + Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQHKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + +R L++ + +I ++ + + K ++ MD + K+Q Sbjct: 743 HVNKQLEQRNKEITTLKMGNIEDQVEEINGFKVLATQVDIANPKAIRETMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L+ E K S++ V + + A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLKK 898 +++ + ++KK Sbjct: 861 NITESLRFIKDYIKK 875 >gi|160947669|ref|ZP_02094836.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270] gi|158446803|gb|EDP23798.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270] Length = 868 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 338/904 (37%), Positives = 520/904 (57%), Gaps = 54/904 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +LEFF+ GH L S LIP ND +L+ N+GM P K+ FTG +K T+ Sbjct: 6 LNEIREEYLEFFESKGHLRLKSYPLIPNNDKSLLLINAGMAPLKDYFTGVKKMSKNRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D+DNVG+T RH TFFEMLGNFSFG YFK AI AW+ LT++ ++D+ Sbjct: 66 SQKCIRTA----DIDNVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWEFLTEKLEMDKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L +TVY+ED+EA+ +W+ GLSA+KI R+ DNFW + E GPCGPCSEI +D+GE Sbjct: 122 LLSVTVYEEDDEAYDIWRNEVGLSAEKIQRLGKEDNFWEL-EVGPCGPCSEIMYDRGEKY 180 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +R++EIWNLVF QF + L +IDTGMGLER+ VL+EK N Sbjct: 181 T-------NPDDRFMEIWNLVFTQFNKDKDGNYHRLEHPNIDTGMGLERLTLVLEEKDNI 233 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++I L +I+ E+++G+KY+ N ++ RVI DH R+ +FLI DG++P+NE RGYVL Sbjct: 234 FEIGLVDTIIKKIEEISGVKYKSNEISDISIRVIADHARAMTFLIYDGVIPSNEQRGYVL 293 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RRA + +LLG + ++ + + + YPEL++ I + L +E+ +F +T Sbjct: 294 RRLIRRAARHGKLLGIKDNFLVDVSKVVMEAYNTEYPELLEDSERIFKILNAEESKFQET 353 Query: 362 LDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +++GL +L+ + +IL+GD AFKLYDT+G PLD+ ++IL + + +D +FN Sbjct: 354 IEQGLGILNSYIEDEKSKNSKILSGDKAFKLYDTYGFPLDLTKEILEEQKMT-VDEEAFN 412 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +E+Q+ RAR +G +EK + T+F+GY Sbjct: 413 KNMEKQKIRARQGRNVSSAGWSEK-NTDYLKSLETTEFLGYTE----------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 N V + + V G K +V D+T FY E GGQ+GD G G Sbjct: 455 ------NVCIGKVIKLFKDELEVSILNQGDKALLVSDKTVFYGEGGGQVGDVGIIEGKHC 508 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L++ D +K H V G ++ L+ ID NRR + NHSATHLLH AL Sbjct: 509 KLKVLDTKKNKNNGIFHSVEVIEGSVKLNDELIFKIDVNNRRDIMKNHSATHLLHQALIE 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+H++Q GS + + LRFD+TH + I+ +LK +E VND IA NL + + + E++ Sbjct: 569 VLGNHINQAGSLVDANKLRFDITHFEAISPEDLKRVEQIVNDKIALNLETIIKEVPLEES 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA L KY D VRVVS S LCGGTHV + EI + I+SESS+ AG Sbjct: 629 SKMGAIGLFEDKYKDIVRVVSFGG-----WSIELCGGTHVKNVSEIQMFKIISESSVAAG 683 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEAITG++ +L + +++ +++ LK + +V + + +E + L+ + KL Sbjct: 684 VRRIEAITGRKVYDYLKKTENQIEEVSNVLKCKKAEMVSKAVSMVDEIKSLEKELKEIKL 743 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 ++ + L +I ++F++ + + +L+ ++D L+ K+ + +I+ + + Sbjct: 744 EITLSSLDSFIAEKKEINGISFIAKKVEFENQNDLRDLIDKLRDKLGTSVIVFANVYQ-G 802 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + + V++DL + NA ++ R AK++ GG GGGRP +A +GG + +K D A+ Sbjct: 803 KLTFTVGVSKDLNARKINAGNIVREIAKLV-GGNGGGRPDIASAGGKDLDKVDFALKQAE 861 Query: 894 SFLK 897 LK Sbjct: 862 EILK 865 >gi|237785598|ref|YP_002906303.1| alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385] gi|237758510|gb|ACR17760.1| Alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385] Length = 886 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 327/920 (35%), Positives = 486/920 (52%), Gaps = 59/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F E F K GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MYTHEIRERFTEHFVKAGHTSVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFNTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 TSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWELLTSSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++T+Y +D+EA +W G+ ++I R+ DN+WSM GPCGP SEI+ Sbjct: 116 GFGLDPDRLWVTIYQDDDEAGDIWHDKIGIPRERIQRLGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G G G + RYIEIWNLVFM+ E+ + LPK +IDTG+G+ Sbjct: 176 YDRGPEY-GKEGGPVVDDTRYIEIWNLVFMEKERGEGTGKENFEILGPLPKKNIDTGLGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E++TG Y + V RVI DH R++ LI D Sbjct: 235 ERVACILQGVDNVYETDLLRPVIDVAEELTGAPYGARHADDVRFRVIADHCRTALMLILD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ I Sbjct: 295 GVAPSNEGRGYILRRLLRRIVRSARLLGATHETMERFMETVRRTMTPSYPEIEDNWERIR 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 T +E+ F TL+ G L + L + G AF L+DTHG P+D+ ++ Sbjct: 355 STAVAEERAFLATLESGEKLFTTIAEDLKARGETVFPGSDAFILHDTHGFPVDLTAEMAN 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D +F++ +++Q++RA+A + G + AT F GYD L Sbjct: 415 EQGLT-LDRDAFDRHMQDQKARAKADNRAKKHGHANLSVYRPFVDNHATVFTGYDTLED- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + +V G++VE+A G V+V+ D+TPFYAE+GG Sbjct: 473 ----------------------EGTILGMVSNGQLVEKATEGDHVDVILDRTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G RL++ DVQK + ++VH V G + M + +D Q R Sbjct: 511 QMADHGELSTAGARLKVNDVQKIGKKLWVHKTEVTGGEIAVGMKVEGKVDPQWRHAARQA 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS THL+H AL +LG Q GS P LRFD ++P+T +LK I+D N + + Sbjct: 571 HSGTHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNFNRPLTDGQLKDIQDIANSAVDAD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + ++A GA AL G Y D VRVV + GG S LCGGTHV ++ Sbjct: 631 YTVNTIETSLDEAKKMGALALFGQSYGDWVRVVEI----GGPFSMELCGGTHVDHASQVG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G RRIEA TG + +L Q L ++A+ LK +V RV+++ Sbjct: 687 PIAVLGESSVGSGARRIEAYTGMDSFRYLAQQQSTLTTVATSLKAPADDVPERVDQLAAR 746 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + A+ Q ++ +V ++ +S+V++K+L+ + ++ ++ Sbjct: 747 LHDAERAVARAHQQALQSKADEFVAHAQRLNNVTVVAESVSDVEAKDLRPMALDVRNRLG 806 Query: 822 S--GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + +++L+ + + K ++ E + NA L + + + G GGG+P MAQ Sbjct: 807 NEPAVVVLISSTGD-KVPFVVSANEQATGNGINANSLVKTIGQSVN-GRGGGKPDMAQGS 864 Query: 879 GPNGNKADQAIAGVASFLKK 898 G + A+ V LKK Sbjct: 865 GSDATGISHALDAVLDDLKK 884 >gi|310778164|ref|YP_003966497.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] gi|309747487|gb|ADO82149.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] Length = 868 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 332/911 (36%), Positives = 513/911 (56%), Gaps = 58/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF++ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Sbjct: 1 MLTGNEIRQRFVEFFKEKEHKHYESASLIP-DDPTLLLTVAGMVPFKPFFLGQKEAPNSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V T QKC+R NDL+NVG+T RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L Sbjct: 60 VVTYQKCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFITEVLGL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +++I+V+ D+EA K+W + + ++I+R+ DN+WS TG CGPCSEI+ D G Sbjct: 116 EKEKMWISVFTTDDEAEKIWIEKCNIPKERIVRLGEEDNWWSAGPTGSCGPCSEIYVDMG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + +R++EIWNLVF ++ ++ LPK +IDTG GLER+A+V+ Sbjct: 176 IEYGGDENSKPGDPEADDRFLEIWNLVFTEWNKKEDGTLEPLPKKNIDTGAGLERIASVV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q+K NNY+ DL +I+ + ++T +Y + +VI DH+R SFLI DG+LP+NE Sbjct: 236 QKKINNYETDLILPIIEEAGRLTSSEYGKTEKTDFSLKVIADHIRGISFLINDGVLPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + RLLG +E + L+ + M AYPE+++ I++ ++ E+ Sbjct: 296 GRGYVLRRVLRRAVRHGRLLGTSENFLYKLVDKVVEIMKGAYPEILENMEHIKKIIKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F TL +G+ +++ + + + L+G++ FKLYDT+G P ++ ++I + + Sbjct: 356 EKFSHTLGQGMQMVNDEIEKAKESGENKLSGEITFKLYDTYGFPYELTEEICEEKD-VEV 414 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + F +EEQ+ RAR+ + + +KYG T F GY+ L+ + Sbjct: 415 YLEEFTAKMEEQKKRARSAREVVMEKGQDSFVEEFYDKYGKTVFEGYEKLQNKSIVYH-- 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 VE KV ++F++TP YAE+GGQ D G Sbjct: 473 ----------------------------VENIDEN-KVMLIFNKTPLYAESGGQASDHGT 503 Query: 534 AIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 DG++ +I DVQ +K + +L+ + + LT+D + RR + NH+ATHL Sbjct: 504 VTADGLKGKIIDVQKQKEIFMHTVVVDEGMDLLKKGLEVTLTVDDERRRDIMRNHTATHL 563 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LGSHV Q GS + D LRFD TH + +T +L+ +E VN I +N + + Sbjct: 564 LHKALKDVLGSHVQQAGSLVDADRLRFDFTHYEAVTRDQLEEVEKIVNRQIFKNTSLKVQ 623 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M ++A SG+ AL G KY D VRVV+V +SS LCGG HV TGEI L I++ Sbjct: 624 HMTLDEAKESGSTALFGDKYGDLVRVVNVPG-----YSSELCGGIHVDRTGEIGLFNILT 678 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG RRIEA TG + + + + S++ LK ++ ++E+ E +R+ Sbjct: 679 ETGVAAGTRRIEATTGVASYKTVNQMERLILSVSDALKTDPKHLEEKIEKTIEAFRETNK 738 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + + +I +V + ++ L+ ++D + K+ S II+L Sbjct: 739 ELEALKSKLASYEANSLFDNIEEINNVKVLIKAFEGKEAGSLREIVDKAKDKLGSCIIVL 798 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +KA + VT+DL+ + A DL + AK + GG GGGRP AQ+GG +G K + Sbjct: 799 GT--DNEKAVFAVGVTKDLMSKVKAGDLVKEIAK-IAGGNGGGRPDFAQAGGKDGKKVPE 855 Query: 888 AIAGVASFLKK 898 A+ L + Sbjct: 856 ALDHARKILTE 866 >gi|259507362|ref|ZP_05750262.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314] gi|259165073|gb|EEW49627.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314] Length = 906 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 330/921 (35%), Positives = 494/921 (53%), Gaps = 62/921 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61 IR F F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 19 THEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTA 77 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 78 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEG 133 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI+ Sbjct: 134 GYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 193 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + + RY+EIWNLVFM+FE+ + + LPK +IDTGMG+ Sbjct: 194 YDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGV 252 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E +TG Y +N + RVI DH R+ LI D Sbjct: 253 ERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILD 312 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + + I Sbjct: 313 GVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERIL 372 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G L + + + G AF L+DT+G P+D+ ++ Sbjct: 373 RVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAA 432 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D+ F + EQRSRA+A S G + + T F G++ L Sbjct: 433 EAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELES- 490 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V ++ G + EA GQ+VEV+ DQ+P YAE+GG Sbjct: 491 ----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGG 528 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 QLGD G + + I DVQK + ++VH A+V G L +V +D Q R Sbjct: 529 QLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQA 588 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHL+H AL +LG Q GS P LRFD ++ +T +L I+ N+ + + Sbjct: 589 HTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTD 648 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + +I Sbjct: 649 WAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIG 704 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESSI +G+RRIEA +G + ++L + +SL+S LK ++ R+ ++ ++ Sbjct: 705 PVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDK 764 Query: 767 YRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 + + A +R+L E+ +I + + + +D+ +L+++ L+ K+ Sbjct: 765 LKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKL 824 Query: 821 --QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 G++++ S++ K + T+ + R ++ +L +L + G GGG+P MAQ Sbjct: 825 SNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQ 883 Query: 877 SGGPNGNKADQAIAGVASFLK 897 G + + D A V + L+ Sbjct: 884 GSGSDIDGLDAAFNAVRAELE 904 >gi|25028304|ref|NP_738358.1| alanyl-tRNA synthetase [Corynebacterium efficiens YS-314] gi|23493588|dbj|BAC18558.1| putative alanyl-tRNA synthetase [Corynebacterium efficiens YS-314] Length = 926 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 330/921 (35%), Positives = 494/921 (53%), Gaps = 62/921 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61 IR F F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 39 THEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTA 97 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 98 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEG 153 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI+ Sbjct: 154 GYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 213 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + + RY+EIWNLVFM+FE+ + + LPK +IDTGMG+ Sbjct: 214 YDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGV 272 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E +TG Y +N + RVI DH R+ LI D Sbjct: 273 ERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILD 332 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + + I Sbjct: 333 GVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERIL 392 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G L + + + G AF L+DT+G P+D+ ++ Sbjct: 393 RVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAA 452 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D+ F + EQRSRA+A S G + + T F G++ L Sbjct: 453 EAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELES- 510 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V ++ G + EA GQ+VEV+ DQ+P YAE+GG Sbjct: 511 ----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGG 548 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 QLGD G + + I DVQK + ++VH A+V G L +V +D Q R Sbjct: 549 QLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQA 608 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHL+H AL +LG Q GS P LRFD ++ +T +L I+ N+ + + Sbjct: 609 HTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTD 668 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + +I Sbjct: 669 WAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIG 724 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESSI +G+RRIEA +G + ++L + +SL+S LK ++ R+ ++ ++ Sbjct: 725 PVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDK 784 Query: 767 YRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 + + A +R+L E+ +I + + + +D+ +L+++ L+ K+ Sbjct: 785 LKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKL 844 Query: 821 --QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 G++++ S++ K + T+ + R ++ +L +L + G GGG+P MAQ Sbjct: 845 SNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQ 903 Query: 877 SGGPNGNKADQAIAGVASFLK 897 G + + D A V + L+ Sbjct: 904 GSGSDIDGLDAAFNAVRAELE 924 >gi|320528969|ref|ZP_08030061.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399] gi|320138599|gb|EFW30489.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399] Length = 872 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 327/911 (35%), Positives = 511/911 (56%), Gaps = 59/911 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R +L FF +K H L S SLIP +DPTL+ +GM P K FTG+ KP Sbjct: 1 MTGNELREAYLRFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPCPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L Sbjct: 61 ITTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++++Y +D EA +W + GL D I+ + DNFW + GPCGP SEI+ D G Sbjct: 117 PKEKLWVSIYPDDNEARAIWLEQPGLLPDHIVPLN--DNFWEIGP-GPCGPDSEIYIDLG 173 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +R++EIWNLVF Q+++ + E +L +IDTG GLER+A+V+Q Sbjct: 174 EGRGCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQ 233 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I + +++G+ Y + + ++ +VI DH RS S +I DGILP+NEG Sbjct: 234 NKETNFETDLLYPIIAYASKISGVAYGSDKSKDISLKVIADHARSISVMIMDGILPSNEG 293 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354 RGYVLRR +RRA+ + R+LG T+P + + A+ A + EL + I+ +R E Sbjct: 294 RGYVLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF TL +G+ LL+G + L ++ +L GD+ FKLYDT+G P ++ ++IL G+ Sbjct: 354 EERFASTLAQGMELLNGEIDRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT- 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + F++ +E QRSRAR+ D Sbjct: 413 LDGVEFDKEMEAQRSRARSARA-----------------------------ENQVVAVPD 443 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + ++V AI + GEIV+ G+ ++ D+TPFYAE GGQ+GD G Sbjct: 444 LSNIDTSALRSDSTAKEAVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEG 503 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + I++ +K +G H A VE G + + +T++ + + + NH+ATHL Sbjct: 504 VLRSDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHL 563 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++G+HV Q GS +TPD LRFD T+ +P+T +++ IE+ VN I +++ + Sbjct: 564 LQAALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDIS 623 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M DA GA AL G KY D VRVVSV S LCGG+HV +TG+I L I+ Sbjct: 624 MMPIADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIG 678 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E + AG+RRIEAITG+ A S+ ++ +++ LK ++ ++++ +E + +Q Sbjct: 679 EFGVAAGVRRIEAITGKAAFSYAATLYHTVQEISAKLKTRPEDLSYQIDKFLDERKAMQE 738 Query: 773 IHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K ++ +I + ++ + EL+++ D +K+ GI++L Sbjct: 739 QLRQFAEFRDKADAQKLLMAVREIGAFHVVAGKANVDSMDELRTIADLACEKLDHGIVIL 798 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S+++ ++ + +A + + +AK +GGGG GGRP MAQ+GG Sbjct: 799 AAV-IDDKVSLVVKADKNAVSAGAHAGQIIKEAAKEVGGGG-GGRPDMAQAGGKTPENIP 856 Query: 887 QAIAGVASFLK 897 QA S ++ Sbjct: 857 QAFDAAISVIQ 867 >gi|313683350|ref|YP_004061088.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994] gi|313156210|gb|ADR34888.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994] Length = 851 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 348/900 (38%), Positives = 506/900 (56%), Gaps = 55/900 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQ 59 M +R FL FF+ HE +PSS L+P +D TL+FTN+GMVPFK+IFTG P Sbjct: 1 MM---DVREAFLAFFESKQHERVPSSPLVP-DDATLLFTNAGMVPFKSIFTGDIPIPANP 56 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ Sbjct: 57 RATSAQTCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAHAWEFVTEVMK 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + +L++TV++ D+EA ++WKK ++AD+I+R+ DNFW M +TGPCGPCSEIF DQ Sbjct: 117 LPKEKLWVTVHESDDEAEEIWKK--HIAADRIMRLGDKDNFWQMGDTGPCGPCSEIFIDQ 174 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G E G +G+R++EIWNLVFMQ+E+ K E LPK SIDTGMGLER VL+ Sbjct: 175 GAEHFNGPEDYMGGDGDRFLEIWNLVFMQYERNAKGELKPLPKPSIDTGMGLERATAVLE 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 T+NYD LF +I+ E + G Y ++RVI DH+R+ +FL+A G +NEGRG Sbjct: 235 GVTSNYDSTLFMPIIKKVEALIGKPYVYATGASYRVIADHIRTVTFLLAQGTNFSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG+T+P M + + MG YP +++ +++E + E+ERF Sbjct: 295 YVLRRILRRAVRHGYLLGFTKPFMFEVADTVAELMGKQYPYIVEKLAVLKEQIMLEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KT+ G+ L + L + +G+VAFKLYDT G PLD+ +D+L + L+ +D+ +F Sbjct: 355 FKTIASGIELFNEELKNT--KGTFSGEVAFKLYDTFGFPLDLTEDMLREKNLS-LDVETF 411 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + EQR RA+A G G E + +L E +G FIGY + ++ Sbjct: 412 ETLMSEQRKRAKAAWKGSGDAHVEGDFKTLLETFGVNTFIGYAYTKAPVKIQ-------- 463 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + E V++ + QK V+ ++TPFYAE+GGQ GDTG Sbjct: 464 --------------ALLGENFERVDQLHAHQKGWVLLEETPFYAESGGQCGDTGTLDDKA 509 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 L + L ++ +D + ++ +HSATHLLH AL Sbjct: 510 TVLDTKKFHGLNLSHI-----ETKATLSVGDTVNALVDPERNE-IAKHHSATHLLHAALY 563 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H+SQ GS + + LRFD +H K ++ E+ +E+ VN + L +TR M+ +D Sbjct: 564 EVLGEHISQAGSLVEHNRLRFDFSHPKAMSHEEIALVEERVNYHVFHALEGMTREMSIDD 623 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A SGA A G KY D VRVV+ G S CGG HV +T I IV ES + A Sbjct: 624 AKKSGAKAQFGEKYGDTVRVVNF-----GTASIEFCGGVHVDNTATIGTFVIVKESGVSA 678 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ G A + Q L+ + + +K +V+ +E + E+ + L+ + Sbjct: 679 GVRRIEAVCGNAAYNLFKQQRHLLEEVEASVKNR--DVLAGIERLKEQVKTLKHEMSAL- 735 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 E+L+ I + ++E+ + ++K +D L+ + S ++L I K+ K + Sbjct: 736 ASSAKEELAVTMIGSTAVV---VAELGAGDIKERIDELKNQHDSVAVLLFQI-KDDKVLL 791 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A D + A +LGGGG GGRP AQ+GG + +K +A +++ K Sbjct: 792 AAGAKNTP---LKAGDWIKTIAPILGGGG-GGRPDFAQAGGKDASKLGEAKDAALAYVTK 847 >gi|299144219|ref|ZP_07037299.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518704|gb|EFI42443.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 874 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 340/911 (37%), Positives = 538/911 (59%), Gaps = 52/911 (5%) Query: 1 MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ IR+ +L FF+ H +LPS SLIP ND +L+ +GM P K FTG+ P Sbjct: 1 MKNLKLHEIRSLYLNFFESKQHLMLPSFSLIPKNDKSLLLIGAGMAPMKKYFTGELTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKCVR G D++NVG+T+RH TFFEMLGNFSFG YFK AI AW+ LT++ Sbjct: 61 RRVTTCQKCVRTG----DIENVGKTDRHATFFEMLGNFSFGDYFKREAITWAWEFLTEQI 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + L++TVY ED+EAF++W + + ++I+++ +DNFW + E GP GPCSEI+ D Sbjct: 117 EISKDDLWVTVYHEDDEAFRIWNEEIKVPKERIVKLGKDDNFWEL-EVGPSGPCSEIYVD 175 Query: 179 QGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G + +R+IE+WNLVF QF++ L +IDTGMGLER+ATV Sbjct: 176 RGEAYGCGDKNCKPGCDCDRFIEVWNLVFTQFDKDESGVYHPLKNPNIDTGMGLERLATV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q N ++ID + +I+ E+++G KYE + + RVI DH+R+ +F+I+D I P+N Sbjct: 236 VQHTNNIFEIDAIQDIIREIEKISGYKYETDKKLDESVRVITDHIRAMTFMISDTIRPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRS 353 EGRGYVLRR +RRA + R+LG + + L + G YPELI+ + I+ +++ Sbjct: 296 EGRGYVLRRFIRRAARHGRILGIKKSFLSELSDLIINSWGADYYPELIENRDNIKSVIKA 355 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F +T+++G+ +L+ + L + +IL+G+ AFKLYDT+G P+D+ +IL Sbjct: 356 EEEKFLETIEQGMSMLESHILDLKEKKLDILDGEYAFKLYDTYGFPVDLTAEILDE-NSI 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F++ ++ QR RARA + + +F+GY+ Sbjct: 415 KLDRDGFDKNMDAQRKRARAARDDSDNIGWGSHDNEKIYEGLKNEFVGYE---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + + +V+ E+V++ G++ ++ D+TPFYAE+GGQ GDT Sbjct: 465 -------------KDECKANIIELVKLNELVDKLTKGERGIIILDKTPFYAESGGQAGDT 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D ++++ D +K +G+ +H VE GI+ + ID R + NHS TH Sbjct: 512 GIIESDKFKIKVIDTKKNVKGLHLHMVEVEEGIVEKSE-VSAKIDVIRRFNIRRNHSVTH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS + + +RFD TH + I +L+ IED VN I + LPV T Sbjct: 571 LLHKALKEVLGNHVNQAGSEVLDNRMRFDFTHFEAIDKEDLQKIEDRVNQKIFEALPVKT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I N EDA GA L KY+ VRVV++ G +S LCGGTHVS+T EI + I+ Sbjct: 631 TITNPEDAYKLGAVGLFEEKYSSVVRVVTM-----GDYSMELCGGTHVSNTSEISMFKII 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ I +G+RRIE+ITG S+L + AS LK ++ +++ +++ + E + + Sbjct: 686 SENGISSGVRRIESITGPAVYSYLNNLENLRDESASTLKSNKSDIIQKIKLLTENVKAYE 745 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + KL+ +++S KI +N++++ +EVD L+++ D +++K+ S +++ Sbjct: 746 KQIEELKLKTAKDEVSEIIKNVKKINSINYVTYRFNEVDVNTLRNLADEVREKVGS-VVV 804 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + K + + V++DL+ + +A ++ + AKV GGGG GGRP MA +GG + +K Sbjct: 805 LFATEIDDKVNFVCAVSQDLVKQKISAGNIVKEVAKVTGGGG-GGRPDMATAGGKDASKI 863 Query: 886 DQAIAGVASFL 896 D A+ + + L Sbjct: 864 DLALEEIKNIL 874 >gi|314936266|ref|ZP_07843613.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] gi|313654885|gb|EFS18630.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] Length = 876 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 335/914 (36%), Positives = 502/914 (54%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKKLKASDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA++LW + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDVEAYRLWHENIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF ++ LP +IDTGMGLER Sbjct: 174 YDRGEAYGQNDPAEEMYPGGENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E ++G KY NN V +VI DH+R+ SF I+DG Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL G+ +L+ +++ + +NG AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D+ +F +E+QR+RAR S + LK +QF+GY+ Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDV--LKNINTKSQFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +I+ ++ G+ V A +G+ V + +TPFYA +GGQ+ Sbjct: 467 -------------------QTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + + +V K G +H IV+ G + + T++ + R+ + NHSA Sbjct: 508 DKGTVGNDQFEIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDATVNKEERKDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV+Q GS + + LRFD +H P+T E+ +E VN+ I + + V Sbjct: 568 THLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTKEEIDQVERRVNEEIWRGISV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M ++A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 HIQEMPIQEAKEMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A + K S+ LKV V +V +I E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENEK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L +R L++ + I ++ + + KE++ MD + K Q Sbjct: 743 QLNKQLEQRNKEITSLKMGNIEDQVEMINGFKVLATEVEVSNPKEIRQTMDDFKSKKQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L G E K S++ V ++L + A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 +++ + ++K Sbjct: 861 NISESLRFIKDYIK 874 >gi|239978415|ref|ZP_04700939.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291450311|ref|ZP_06589701.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291353260|gb|EFE80162.1| alanyl-tRNA synthetase [Streptomyces albus J1074] Length = 890 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 332/923 (35%), Positives = 502/923 (54%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ P Sbjct: 1 MESAEIRRRWLRFFEERGHAVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEATPPAPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTSQEQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY +D+EA +W++ G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLDPERLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ +++ P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEDKENFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ+ N Y+ID + +I + ++TG++Y + + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQDVRNLYEIDTSRIVIDKATELTGVQYGADQASDVSLRVVTDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + I Sbjct: 295 GVTPGNEGRGYVLRRIMRRAVRNMRLLGATGPVVAELVDTVIESMGQQYPELITERKRIL 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +LD + + +L+GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGSTVLSGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + GAT F GY G Sbjct: 415 EQGLS-VDEPGFRRLMKEQRERAKADARAKKTGHADLSAYREVADAAGATDFTGYLATEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V ++ G A G +VE+V D+TPFYAE G Sbjct: 474 -----------------------ESTVVGLLVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG +G +++ DVQK G+ VH +V+ G + ID RR ++ Sbjct: 511 GQIADTGRIRFDNGAVVEVRDVQKPVPGVHVHKGVVQVGEVTVGSPAYAAIDVGRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + A L +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPGAVLTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M+ +DA GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RDLDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + +V + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKVSAML 745 Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + ++ + + + + + ++ + + +L+ ++ ++ Sbjct: 746 GKLKEAEKEIERFRAEKVLQAAAGLAAGAQDVRGTALVTGRVPDGTGADDLRKLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I ++ L ++ ++ +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIPADRPAVVALFTVANDRPLTVVATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N D+A++ V + + Sbjct: 865 QGGGQNPQAIDEAVSAVERQVAE 887 >gi|329957545|ref|ZP_08298020.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056] gi|328522422|gb|EGF49531.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056] Length = 873 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 328/921 (35%), Positives = 487/921 (52%), Gaps = 73/921 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G Y + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIGDMSGTAYGKNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +L+E G T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D+TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E L+ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPLMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS ++P+ LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVSPESLRFDFSHFQKVTDEEIRRVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFSS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + ++ G + + Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + +I V + + + + +K++ L+ Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAVKNIAFQLR 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N + + A+ V Sbjct: 852 AGGKNPDGLNAAVEKVIELAN 872 >gi|329121068|ref|ZP_08249699.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965] gi|327471230|gb|EGF16684.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965] Length = 885 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 310/908 (34%), Positives = 500/908 (55%), Gaps = 55/908 (6%) Query: 2 SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + IR +L FF+ K H L S LIP +DP+L+ +GM P K FTG+ +P Sbjct: 17 MKGNDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHR 76 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT QKC+R G D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ + Sbjct: 77 ITTSQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKM 132 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+T++ +D++A+ W K G++ + I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 133 DKERLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQG 189 Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E +G+R++EIWNLVF QF++Q L K +IDTG GLER+A V+Q+ Sbjct: 190 ESFGTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLAKKNIDTGAGLERLAAVMQQ 249 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K NN++ DLF +I + +++G Y + ++ V +VI DH R+ + +I+DG+LP+NEGR Sbjct: 250 KKNNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGR 309 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + +L+G + M ++ + M YPEL + + I++ E+ER Sbjct: 310 GYVLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEER 369 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL+ G LL ++ K I L+G+ FKLYDT+G P ++ +I G++ ID Sbjct: 370 FQSTLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDK 428 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++ +Q+ RAR + + + + D Sbjct: 429 EGFIISMNKQKERARNARVKISAKV----------------------------LTPDTTK 460 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L K V + + + + GE + A G+ + V+ PF+AE GGQ+GD G Sbjct: 461 LDAKNLTVKDEDVDTTIVMLGKNGEEILSATDGEDLVVILKNNPFHAEGGGQMGDIGILR 520 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ + +K +GI + G + + + +D R L+ NH+ THLLH Sbjct: 521 NSSGVFEVHNTKKLPDGIVYLIGTITEGKISVNDIVEVKVDRVRRAALAKNHTGTHLLHA 580 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG +Q GS + PD LRFD T ++P+T+ ++ +E VN+ I ++L + T+ + Sbjct: 581 ALRQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILESLTLTTKEVP 640 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A +GA AL G KY VR+V + G S LCGG+H +TGE+ I+SES Sbjct: 641 LEEARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESG 695 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRI A+TG A ++ + +++ A LK + ++ +++++ + +K + Sbjct: 696 IGSGLRRIVALTGISAYKAMVSDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDIL 755 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K + +LS ++F + + EL+ + D ++ K+ G +L + Sbjct: 756 KLKNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSV 815 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K + + + +++ ++ + + AK+ GG GGG+P +AQ+GG + +K + AI Sbjct: 816 SN-GKVNFVGMASKEAVEAGIHMGKVVSQVAKICNGG-GGGKPTVAQAGGKDISKVEDAI 873 Query: 890 AGVASFLK 897 ++ Sbjct: 874 KESEKIIE 881 >gi|325570263|ref|ZP_08146129.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] gi|325156746|gb|EGC68920.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] Length = 880 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 335/918 (36%), Positives = 501/918 (54%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRMTNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL+ + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWAEEVGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G E ERY+EIWNLVF +F Q LP +IDTGMGLE Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q N++ DLF +I A ++ ++ +VI DH+R+ SF I D Sbjct: 234 RMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDAAFLYKLVPIVGEIMESYYPEVLEQQEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V++ + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRNEEERFHETINEGLDILNQVIAQVKADNQDTLAGQDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F Q ++ QR+RARA S + L + ++F+GYD L Sbjct: 414 DEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE-- 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +S + I+Q + + +G+ +++F +TPFYAE GG Sbjct: 469 ---------------------ANSELLVIIQDEALHDSVSTGE-AKLIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ DTG + + + KKA H + L+ ++ L +D R ++ Sbjct: 507 QVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATVKAPLQEGVNYFLQVDQHRRNKIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +TS EL +E VN I + Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPVVT + + A GA AL G KY VRVV+V S LCGGTHV++T +I Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNVA-----DWSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 + IVSES I AG+RRIEA+T Q A + L ++ +LK++A +K VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEETQLKAIAGIVKSAQLKEVVAKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+LQ + +L + ++ + ++ ++ D +L+ + D ++K Sbjct: 742 AQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L + + K ++L + + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 DHSDILVLA-TANDGKVNLLAAMNKVANEKGLKAGDLIKEIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+ A++L Sbjct: 860 GKNPEGITAALETAAAWL 877 >gi|313891768|ref|ZP_07825373.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E] gi|313119762|gb|EFR42949.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E] Length = 869 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 310/908 (34%), Positives = 499/908 (54%), Gaps = 55/908 (6%) Query: 2 SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + IR +L FF+ K H L S LIP +DP+L+ +GM P K FTG+ +P Sbjct: 1 MKGNDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT QKC+R G D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ + Sbjct: 61 ITTSQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKM 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+T++ +D++A+ W K G++ + I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 117 DKERLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQG 173 Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E +G+R++EIWNLVF QF++Q L K +IDTG GLER+A V+Q+ Sbjct: 174 ESFGTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLVKKNIDTGAGLERLAAVMQQ 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K NN++ DLF +I + +++G Y + ++ V +VI DH R+ + +I+DG+LP+NEGR Sbjct: 234 KKNNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + +L+G + M ++ + M YPEL + + I++ E+ER Sbjct: 294 GYVLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEER 353 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL+ G LL ++ K I L+G+ FKLYDT+G P ++ +I G++ ID Sbjct: 354 FQSTLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDK 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++ +Q+ RAR + + + + D Sbjct: 413 EGFIISMNKQKERARNARVKISAKV----------------------------LTPDTTK 444 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L K V + + + + GE + A G+ + V+ PF+AE GGQ+GD G Sbjct: 445 LDAKNLTVKDEDVDTTIVMLGKNGEEIVSATDGEDLVVILKNNPFHAEGGGQMGDIGILR 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ + +K +GI + G + + + +D R L+ NH+ THLLH Sbjct: 505 NSSGVFEVHNTKKLPDGIVYLIGTITEGKISVNDMVEVKVDRVRRAALAKNHTGTHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG +Q GS + PD LRFD T ++P+T+ ++ +E VN+ I +L + T+ + Sbjct: 565 ALRQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILGSLTLTTKEVP 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A +GA AL G KY VR+V + G S LCGG+H +TGE+ I+SES Sbjct: 625 LEEARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRI A+TG A ++ + +++ A LK + ++ +++++ + +K + Sbjct: 680 IGSGLRRIVALTGISAYEAMVNDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDII 739 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K + +LS ++F + + EL+ + D ++ K+ G +L + Sbjct: 740 KLKNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSV 799 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K + + + +++ ++ + + AK+ GG GGG+P +AQ+GG + +K + AI Sbjct: 800 SN-GKVNFVGMASKEAVEAGIHMGKVVSQVAKICNGG-GGGKPTVAQAGGKDISKVEDAI 857 Query: 890 AGVASFLK 897 ++ Sbjct: 858 KESEKIIE 865 >gi|228475198|ref|ZP_04059924.1| alanine--tRNA ligase [Staphylococcus hominis SK119] gi|228270809|gb|EEK12211.1| alanine--tRNA ligase [Staphylococcus hominis SK119] Length = 876 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 334/914 (36%), Positives = 501/914 (54%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKKLKASDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA++LW + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMGMEPEKLYVTIHPEDVEAYRLWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF ++ LP +IDTGMGLER Sbjct: 174 YDRGEAYGQNDPAEEMYPGGENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E ++G KY NN V +VI DH+R+ SF I+DG Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL G+ +L+ +++ + +NG AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D+ +F +E+QR+RAR S + LK +QF+GY+ Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDV--LKNINTKSQFVGYETTDY---- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +I+ ++ G+ V A +G+ V + +TPFYA +GGQ+ Sbjct: 467 -------------------QTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + + +V K G +H IV+ G + + ++ + R+ + NHSA Sbjct: 508 DKGTVGNDQFAIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDAAVNKEERKDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV+Q GS + + LRFD +H P+T E+ +E VN+ I + + V Sbjct: 568 THLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTEEEIDQVERRVNEEIWRGISV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M ++A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 HIQEMPIQEAKEMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A + K S+ LKV V +V +I E + Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENEK 742 Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L +R L++ + I ++ + + KE++ MD + K Q Sbjct: 743 QLNKQLEQRNKEITSLKMGNIEDQVEMINGFKVLATEVEVSNPKEIRQTMDDFKSKKQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L G E K S++ V ++L + A D+ + A ++ GG GGGRP MAQ GG Sbjct: 803 IIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860 Query: 884 KADQAIAGVASFLK 897 +++ + ++K Sbjct: 861 NISESLRFIKDYIK 874 >gi|224418366|ref|ZP_03656372.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|253827685|ref|ZP_04870570.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|313141896|ref|ZP_07804089.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|253511091|gb|EES89750.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|313130927|gb|EFR48544.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] Length = 853 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 336/901 (37%), Positives = 508/901 (56%), Gaps = 58/901 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FLEFFQ GH++ S L+P +DPTL+FTN+GMV FK+IFTG+ Sbjct: 1 MK--KDVRALFLEFFQSKGHKIYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPTPSPN 57 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 58 IATSAQLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEVLG 117 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + LY+T+++ D+EAF+LWK+ + +++I R+ DNFW M +TGPCGPCSEIF DQ Sbjct: 118 FSKEVLYVTIHESDDEAFELWKE--HIDSNRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQ 175 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G E G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +L+ Sbjct: 176 GAEKFNGPEDYFGGDGDRFLEIWNLVFMQYERDIEGNLKPLPKPSIDTGMGLERVMALLE 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K++N+D LF LI E++ G KY + + RVI DH R+ +FL+A G+ EGRG Sbjct: 236 GKSSNFDSSLFMPLIAKVEEIVGQKYFYESGASFRVIADHARAVAFLLAQGVNFDKEGRG 295 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG +P + +L ++C MGS Y L + K +I+ ++E+ERF Sbjct: 296 YVLRRILRRAVRHGYLLGMRKPFVYEVLESVCENMGSHYHYLKEKKEIIKTQCKAEEERF 355 Query: 359 GKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +TL+ G+ L + VL + +G++AFKLYDT+G PLD+ QD+L G G+DI Sbjct: 356 FETLENGMNLFNKELEVLKKEKSKALFSGEIAFKLYDTYGFPLDLTQDMLRENGF-GVDI 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 SF +++Q+ +A+A+ G G E + +L K+G FIGY+ Sbjct: 415 DSFEVCMQKQKEQAKANWKGSGDSIQEGDFKTLLSKFGENVFIGYECAES---------- 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + A++ + + + G K V+FD+TP Y ++GG +GD G + Sbjct: 465 -------------KSKILALLDENFKEVKTLQG-KGYVMFDKTPLYPQSGGPIGDKGRIL 510 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + KK G+ + + L + + + +++ +HSATHLLH Sbjct: 511 QQNEIVATITDTKKYFGLNISTLETLK-PLEIGQEVWIEVSKDR-LEIAKHHSATHLLHK 568 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H++Q GS + + LRFD +H K ++ EL +E VN+ I + P + +M Sbjct: 569 ALREVLGDHITQAGSLVESNRLRFDFSHPKALSYEELNKVELLVNEKILKANPQICEVMG 628 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A + GA AL G KY + VRV+S S LCGG HV +T I YIV ES Sbjct: 629 IEAAKSKGAMALFGEKYGENVRVISFGD------SIELCGGIHVENTANIGSFYIVKESG 682 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+ G+ A + ++ S LK N++ +++ E+ + L+ Sbjct: 683 VSSGVRRIEAVCGKAAYYYGKEALSEIASAKEMLKTQ--NLLEGIKKQKEQIKALKSQGG 740 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 K ++N KI ++N +S +I ++K ++D ++ K + +I+L+ ++ Sbjct: 741 NSKNEINNL-----KIQEINGISMVIQGFSGSDIKEIIDEIKNKYEKVVILLI----DES 791 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 + V A + AKV+ GG GGGR A +GG +K ++A+ F Sbjct: 792 GRIAAGVKNAP---IKAGIWVKEVAKVM-GGNGGGRDDFATAGGKALDKIEEALKKAKEF 847 Query: 896 L 896 + Sbjct: 848 V 848 >gi|224538063|ref|ZP_03678602.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus DSM 14838] gi|224520311|gb|EEF89416.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus DSM 14838] Length = 872 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 333/919 (36%), Positives = 490/919 (53%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVDVLKI 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRPEEEKAQIPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ+KT+NYD D+F+ +++A +TG KY + + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQDKTSNYDTDVFQPILKAIGNMTGKKYGEDEKSDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +LKE G T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPAHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + EDA GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R + ++ LK L + + ++ G + + Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAP-DLAGTIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ + K E L + +I + + + ++ +K++ L+ Sbjct: 733 YIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVIKICAP-IPAESIKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 851 AGGKNIDGLNAAIEKVLEL 869 >gi|189345755|ref|YP_001942284.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245] gi|189339902|gb|ACD89305.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245] Length = 888 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 325/924 (35%), Positives = 501/924 (54%), Gaps = 68/924 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL+FF H+++ S+ +IP +DPTL+FTN+GM FK++F G+ Y Sbjct: 1 MKSREIRQSFLDFFAGKEHKIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TV+ +D+E+F+LW+ ++ + D I+R DNFW M E+GPCGPCSEI D E Sbjct: 121 KERLYATVFRDDDESFQLWQTVTDIPHDHILRFGEKDNFWEMGESGPCGPCSEIHIDLTE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + R IE+WNLVF+Q+ +Q LP+ +DTGMG ER+ V+Q K Sbjct: 181 D-GSGKSLVNVGDYRVIELWNLVFIQYNRQGDGRLEPLPQRHVDTGMGFERVCAVMQGKG 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F+ L ++TG+ Y + + RVI DH R+ +F ++DG +P+NEGR Sbjct: 240 SNYDTDVFRPLFDRITEITGVVYKATMDDPCDIAMRVIADHARTLTFALSDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y++ LG +EP++ L+ L MG +PEL++ + + +R+E+E Sbjct: 300 GYVLRRILRRALRYSKTLGCSEPILHQLVGTLAVSMGEEFPELVKQQETVSRIVRAEEES 359 Query: 358 FGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + V+ + + GD AF+LYDT G PLD+ + + G +D Sbjct: 360 FLATLDRGIEIFNEVIAGARAAGAAAITGDDAFRLYDTFGFPLDLTRLMAAEAGFE-VDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++EQ++RAR + + + + F GYD L + + Sbjct: 419 PGFEHCMQEQKTRARQDRKDKRQLQEDGGEWMWFSEERTSVFTGYDSLEELSSIAGVSML 478 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +V +V D+TPFYAE+GGQ GD G Sbjct: 479 P--------------------------------DRVLLVLDRTPFYAESGGQSGDCGWIE 506 Query: 536 GDGIRLQITDVQKKAEGIFVH------------HAIVERGILRTEMSLVLTIDYQNRRQL 583 RL+++D +K + I + +++ ++D NR+ Sbjct: 507 TAEYRLKVSDTRKDGDAIVHVVTEAHDTARDSAIDPADVSFDGGKLACRASVDRANRQGT 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL ILG HV Q GS ++ + LRFD +H +TS EL+S+E VN+ I Sbjct: 567 ERNHTATHLLHAALRRILGQHVQQKGSFVSAERLRFDFSHFSKLTSGELESVESEVNEQI 626 Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 V+ + ++A+ GA A G KY DRVRVV + S LCGGTHV S Sbjct: 627 RSAETVIKHQDVPYDEALGKGALAFFGDKYADRVRVVEIPG-----LSIELCGGTHVDSI 681 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761 G+I L IVSESS+ +G+RRIEA+TG+ A + + +L+ + LK+ V ++ Sbjct: 682 GQIGLFKIVSESSVASGVRRIEALTGKAAEQLMWKEYRELQEIRHMLKLKAEEPVTAKIV 741 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 E+ E ++L+ + + + + L + ++ + M+ ++ VD++ L+ AL Sbjct: 742 ELAESKKELEKLLQEYRSSALADILLHALDASEEVNGIRIMARMLDHVDAEALRQATLAL 801 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874 ++K+ +L + E K S++ + + +A L R +AK + GG GGG+P Sbjct: 802 REKVAGSAGILCTVD-EGKVSLIAFAGDRAVRDFGIDAGKLVREAAKNVQGG-GGGKPEF 859 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 A +GG N ++A + +++ Sbjct: 860 ATAGGKNPEGIEKAFEVFVAAVRE 883 >gi|294811565|ref|ZP_06770208.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|326440050|ref|ZP_08214784.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|294324164|gb|EFG05807.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] Length = 889 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 331/923 (35%), Positives = 508/923 (55%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLINAGMVPFKPYFLGETKPPFPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G + + RY+EIWNLVFMQ+E+ + + P +IDTG+GL Sbjct: 176 YDRGPAFGAEGGPAVNDE-RYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG++Y + + V+ RVI DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ RF KTL+ G +L+G + + +L GD AF L+DT G P+D+ +I Sbjct: 355 AVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR++A+A + +G + + + + GAT+F GY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGYAATEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G +++ DVQ+ G+ VH V+ G + S ID + RR ++ Sbjct: 511 GQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + + L +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISGML 745 Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQK 818 + + + K + + I V +S + + + +L+ ++ ++ Sbjct: 746 AKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRRLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I ++ L ++ + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N +AIA V + + Sbjct: 865 QGGGQNPEAVGEAIAAVERLVAE 887 >gi|160891225|ref|ZP_02072228.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492] gi|317481112|ref|ZP_07940189.1| tRNA synthetase class II [Bacteroides sp. 4_1_36] gi|156859446|gb|EDO52877.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492] gi|316902713|gb|EFV24590.1| tRNA synthetase class II [Bacteroides sp. 4_1_36] Length = 872 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G KY + + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG+AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LL+ + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKNEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +LKE G T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D+TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVVDTKKENNLPIHI---TKKLPEHMEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R + ++ L L + + ++ G + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAP-DLAGTIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + ++ V + + ++ +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKVIKFCAP-LPAETVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 851 AGGKNADGLNAAIDKVLEL 869 >gi|254519282|ref|ZP_05131338.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] gi|226913031|gb|EEH98232.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] Length = 879 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 331/912 (36%), Positives = 525/912 (57%), Gaps = 52/912 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ H L S L+P ND +L+ N+GM P K FTG ++P + + Sbjct: 4 MGTNELREAYLKFFESKDHLRLESFPLVPKNDKSLLLINAGMAPLKPYFTGLQEPPRKRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFKE I AW+ +T+ + Sbjct: 64 TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEIIPWAWEFITETLQIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LY+T+Y ED+EA+ +W K + + +I R+ +DNFW + GPCGPC+EI +D+GE Sbjct: 120 KDKLYVTIYLEDDEAYDIWCKKTDVDPKRIFRLGKDDNFWEIG-VGPCGPCTEIHYDRGE 178 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + +R +E WNLVF QF++ + L +IDTGMGLER+AT++Q Sbjct: 179 GAITNVEDFVKASDEDRVVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K+++Q +++G+KY + ++ R+I DH++S + LI+DG+ P+NEGR Sbjct: 239 VDNIFEIDTVKNILQKVSELSGVKYGEDKLKDISLRIITDHVKSVTMLISDGVQPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + ++ ++ AYP LI++K IE + E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGIKGLFLTDIVESVVENYSGAYPMLIESKEYIERIVSLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + ++ L G+ AFKLYDT+G P+++ ++IL +G+ +D Sbjct: 359 FNETIDSGMNILNDYIEEMEASNEKTLKGEKAFKLYDTYGFPIELTEEILEEKGM-NVDY 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +F + ++EQR RAR+ +++ + + T+FIGYD + Sbjct: 418 EAFRKEMDEQRQRARSARGESSYMGSDENPINKIDASINTEFIGYDNIE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V+S + + V+E G+K +V D+TPFYAE GGQ+GD G Sbjct: 467 ------------VNSKILVLANDNNFVDELSKGEKGYIVTDKTPFYAEMGGQVGDKGIIK 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + D +K G +H+ V G ++ L ID R ++ NH+ATH+LH Sbjct: 515 TASGEAYVYDTKKNVGGKTIHYVKVVEGTIKINEEANLKIDVLRRNNIAKNHTATHMLHE 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV+Q GS + + LRFD H + +T E++ IE+ VN I + V T +M Sbjct: 575 ALKQVVGKHVNQAGSYVDDERLRFDFAHFQGLTEEEIEKIEELVNKKIMEVFNVDTNLMT 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA AL KY D+VRVVSV G S LCGGTHV+++GEI L I++E+ Sbjct: 635 LDEAKESGAMALFDDKYGDKVRVVSV-----GEFSKELCGGTHVNNSGEIGLFKIINEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA++G A ++ + LK S LK S+ +V+ ++ E ++ + + Sbjct: 690 VAAGIRRIEAVSGLNAIKYMEEKQRLLKEACSALKCSEKDVLKKIASQGAEIKEKEKEIS 749 Query: 776 KRKLQLN--VEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L VED S ++ + +++ + +D L+ + D ++ K+ SG+++L+ Sbjct: 750 ELKSKLTCGVEDDILSSVKEVNGIKVVAYGLEGIDGNALRDLGDKMRSKLSSGVVVLLS- 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K +V+ + T+D L N + + A V+GGGG GGRP MAQ+GG N AI Sbjct: 809 NVGGKVNVVSMATKDVLEKGINCGKIIKEVAAVVGGGG-GGRPDMAQAGGKNPENIKSAI 867 Query: 890 AG----VASFLK 897 V S +K Sbjct: 868 EKTYLVVESLIK 879 >gi|270294506|ref|ZP_06200708.1| alanyl-tRNA synthetase [Bacteroides sp. D20] gi|270275973|gb|EFA21833.1| alanyl-tRNA synthetase [Bacteroides sp. D20] Length = 872 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVSGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G KY + + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG+AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LL+ + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKSTGKNEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +LKE G T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D+TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVVDTKKENNLPIHI---TKKLPEHMEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R + ++ L L + + ++ G + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAP-DLAGTIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + ++ V + + ++ +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKVIKFCAP-LPAETVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 851 AGGKNADGLNAAIDKVLEL 869 >gi|73662452|ref|YP_301233.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|83305860|sp|Q49Y56|SYA_STAS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|72494967|dbj|BAE18288.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 328/914 (35%), Positives = 519/914 (56%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ S IR F+++F + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKNLKASEIRQNFIDYFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K Sbjct: 61 PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ + LY+T++ ED+EA+++W + GL +IIRI NFW + E GP GP +EIF Sbjct: 117 WMAMEPKLLYVTIHPEDKEAYRIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ER++E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEDFGQDDPAEEMYPGGENERFLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I E+V+G Y N+ V +VI DH+R+ +F IADG Sbjct: 234 MASLAQNVRTNYETDLFMPIIHEVEKVSGKTYLENDNYDVAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYRLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ +++ ++G AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEEGLAILNNLVAQAKTSTHEISGKDAFKLYDTYGFPVELTEEIATQEN 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L+ ID+ +F + +++QR RAR S + LK+ + F+GYD++ + Sbjct: 414 LS-IDMQTFEEEMQQQRDRARQARQNSQSMQVQSEV--LKKITTDSTFVGYDVMDKA--- 467 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S++ I+Q GE+VE A +G+ + + +TPFYA +GGQ+ Sbjct: 468 --------------------SVITDIIQNGELVESAEAGETIYFILRETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + + +T+V K G +H ++ G ++ + +++++ RR + NHSA Sbjct: 508 DQGTISNENFEIAVTEVTKAPNGQNLHKGEIQFGTVKKNAEVSASVNHKERRSIKKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + D LRFD +H P+T E+ ++E VN+ I ++ V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEEIDTVERRVNEEIWNSIEV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M +A GA AL G KY + VRVV++ S LCGG HV++T EI L Sbjct: 628 DIQEMPISEAKQLGAMALFGEKYGEIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IVSES AG+RRIEA+TG+ A +L + ++ S +KV + V+ ++ + +E + Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLETIQSQFNAVKSQVKVKSDDQVLEKIVHMQDEEK 742 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L ++ ++ + +I + ++ + ++K ++ MD + K+Q Sbjct: 743 ELTKQLEQKNKEVTSLKMGDITNQVEEINGLKVLATEVDVPNAKAIRETMDDFKSKLQDT 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L+ + + K S++ V + L D+ A D+ + A V+ GG GGGRP MAQ GG Sbjct: 803 VIVLIS-NIDGKVSLVATVPKALTDKVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPK 860 Query: 884 KADQAIAGVASFLK 897 +++ + ++K Sbjct: 861 NITESLRFIKDYIK 874 >gi|228470921|ref|ZP_04055766.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3] gi|228307318|gb|EEK16332.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3] Length = 872 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 334/918 (36%), Positives = 496/918 (54%), Gaps = 68/918 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR FL+FF+++GH ++PS+ ++ +DPTLMFTN+GM FK+I G ++P Y+ Sbjct: 1 MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK+ AI+ AW LT+ L Sbjct: 61 AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAIEFAWTFLTERLHL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+TV+ D+EA W + + + D+II + DNFW M +TGPCGPC Sbjct: 121 PKDRLYVTVFGGSAEEGLSRDDEAAGYWLQHT--TEDRIIDGSRKDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ IEIWNLVFMQ++++ LP IDTGM Sbjct: 179 SEIHIDLRSEEERQEICGRDLVNKDHPLVIEIWNLVFMQYDRKADGHLEPLPHKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ +Q K +NYD DLF LI+A E ++G +Y N + RV+ DH+R+ +F I Sbjct: 239 GFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ YA L EP++ LLP L MG AYPE++ + Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGGAYPEIVAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDI 404 LI ++ E+E F +TL +GL LL+ + L +D ++L+G AF LYDT+G PLD+ + I Sbjct: 359 LIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L RG+ +D ++F++ ++EQ+ + W L E+ + F+GY+ L+ Sbjct: 419 LSERGMT-LDQVAFDKLMQEQK-----SRARQAAAVDAADWEVLDEETSESTFVGYETLQ 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RKV +K +VV +TPFYAE Sbjct: 473 IETHILRYRKVADKKHSY----------------------------YQVVLAETPFYAEM 504 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G I K+ + VH + L+ + + R Sbjct: 505 GGQVGDKGVLIAQDGTEYPILDTKRENNLTVHIL--STLPADPKQPLIARVGAELRHLTE 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHL+HHAL +LG+HV Q GS ++ D LRFD +H K +T E+ +E VN I Sbjct: 563 ANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIR 622 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + P R + A GA AL G KY D VRV+ S LCGGTHV+STG Sbjct: 623 ADRPRDEHRNVPIAQAKEMGAMALFGEKYGDEVRVIKYGD------SVELCGGTHVASTG 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I I+SE SI AGIRRIEA+TG +A ++ +E+L+ L + ++ + Sbjct: 677 QIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL-KALDRL 735 Query: 764 W----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+ + ++ + Q+ ++ L+ + + + S K V ++++ Sbjct: 736 IAESAEQRKAIEQYTKAQAEQIALQALADQTKRGETTIVTVNKSMSSDVAKDVAGTIRER 795 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +Q + L+G ++E K ++ ++++ DL+D+ NA L + A ++ GG GGG+PH A +G Sbjct: 796 LQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNAGKLIKEVASLIKGG-GGGQPHFATAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N AI + S + Sbjct: 855 GRNPEGLQAAIDHIVSLI 872 >gi|167764982|ref|ZP_02437103.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC 43183] gi|167697651|gb|EDS14230.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC 43183] Length = 873 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 486/919 (52%), Gaps = 73/919 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A +TG Y + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMTGATYGKNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +L+E G T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D+TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------FQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E + +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPFMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + ++ G + + Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDAFQDTMRDLKALFNNAP-DLSGTIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + ++ + + + + +K++ L+ Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEVNGTKVIKFCAAMIPADTVKNIAFQLR 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 852 AGGKNPDGLNAAVDKVLEL 870 >gi|299535706|ref|ZP_07049027.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] gi|298728906|gb|EFI69460.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] Length = 886 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 335/924 (36%), Positives = 510/924 (55%), Gaps = 68/924 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +LEFF++ GH PS+ L+P NDP+L++ NSG+ K F G+ P + Sbjct: 1 MKAVDIRRMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K Sbjct: 61 TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D L IT++ ED+EA+ +W + G+ +++IR+ NFW + E GP GP SEIF+D+ Sbjct: 117 FDPALLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 173 Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G E ERY+EIWNLVF QF LPK +IDTGMGLER+ + Sbjct: 174 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281 V+Q N+D DLF +I+ E+ KY+ V+ +VI DH+R+ Sbjct: 234 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPGEVDLNEIFGSEEDINTPFKVIADHIRT 293 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YPE+ Sbjct: 294 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 353 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399 + I+ +++E+ RF +TLD GL + + V+ + + G AF+LYDT+G P++ Sbjct: 354 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVVESQKAAGHDYIPGADAFRLYDTYGFPIE 413 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D F +A+EEQR RARA + S + L A++F+G Sbjct: 414 LTEEYAEEVGMK-VDHEGFEEAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L V++ + A++ G++ + A GQ+ V+ +TP Sbjct: 471 YDTL-----------------------TVNTEIAAMIVNGQVAKVASEGQEALVILAKTP 507 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQ+ D+G D + DVQK G +H +VE G + E ++ ++ + Sbjct: 508 FYAEMGGQIADSGTISNDSFTAVVKDVQKAPNGQPLHTVVVESGEMHVEDAVQAVVNRDD 567 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + NH+ATH++ AL +LG HV+Q GS + PD LRFD +H +T EL+ IE V Sbjct: 568 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 627 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ + ++ VV ++A A GA AL G KY D VRVVS+ G +S LCGG HV Sbjct: 628 NEKVWDDIEVVIEEKGIDEAKAMGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 + EI IVSE I AG RRIEA+TG+ A + ++ L A+ LK + ++V + Sbjct: 683 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEAVKEEEALLNDAAALLKANAKDIVTK 742 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMD 814 V+ + +Y++LQ + ++ + I DV +S + D+ +L+ +MD Sbjct: 743 VQALQADYKELQRENEALSQKIANAQAGAIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMD 802 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 L+ K+ +I+L + + K + V+++L+ ++A ++ ++ A+ GG GGGRP Sbjct: 803 DLKAKMPKAVIVLGAVDGD-KVMLCAGVSKELVGGNYHAGNIVKMVAEAC-GGKGGGRPD 860 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MA +G + +K D+A+ V ++K Sbjct: 861 MAMAGAKDASKLDEALLSVYDYVK 884 >gi|218961963|ref|YP_001741738.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] gi|167730620|emb|CAO81532.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] Length = 866 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 344/907 (37%), Positives = 498/907 (54%), Gaps = 55/907 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F++FF GH +PSS +IP +DPTL+F N+GM FK+IF GQ++ Y+ Sbjct: 1 MISSKEIRQQFIDFFLNRGHIFVPSSPVIPEDDPTLLFANAGMNQFKSIFLGQKEITYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDL+ VG+ HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + + Sbjct: 61 VVNSQKCIRAGGKHNDLEEVGKDGYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D EAF++WK+ + + I DNFW M ETGPCGPCSEI D+G Sbjct: 121 PKDKLYATVYKTDTEAFEIWKQETDIDPTHISYFDDKDNFWEMGETGPCGPCSEIHIDRG 180 Query: 181 ------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + PG + + R+IE+WNLVF+Q+ ++ + L +DTG G ER+A Sbjct: 181 SSHCTRQNEPGHICKINGGCSRFIELWNLVFIQYNREADKTLSPLKNKFVDTGAGFERLA 240 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ+K +NY+ DLF LI E+++G+ Y + HRVI DH+R F +ADG P+N Sbjct: 241 QVLQDKNSNYETDLFMPLINKIEELSGVAYTQETGMPHRVIADHIRCLCFALADGGFPSN 300 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA Y RLLG+ EP + L+P + +M + EL + I+ +++E Sbjct: 301 EGRGYVLRRILRRAARYGRLLGFAEPFLHLLVPLVIEQMAHHFSELNGKEDYIKMVIKAE 360 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF KTLD GL + L E+++G AF LYDT+G P D+ + +GL ID Sbjct: 361 EERFNKTLDTGLEKFREITQKLK-GEVISGSDAFILYDTYGFPPDLTAILAEEKGLK-ID 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + ++ QR RAR S + W T+F+GY +++ Sbjct: 419 YEGFEKEMQLQRKRARKASKFTLF-VNNEDWIEFS-PVTPTEFVGYKENTVQTYIQRYA- 475 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + QTPFYAE+GGQ+ DTG Sbjct: 476 ------------------------------IQEKGLILMQLAQTPFYAESGGQVSDTGKI 505 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + L+IT+V+K+ E I + ++RG + + ID + R+ ++ NH+ATHLLH Sbjct: 506 YNEEFELEITNVRKQDEYIIHY-GKLKRGTVN-NAPVTAEIDRERRKSIARNHTATHLLH 563 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG H Q GS + D LRFD H + +T E++ +ED VN + N V T + Sbjct: 564 KALREVLGEHTVQKGSLVHSDYLRFDFAHFRALTLEEIRKVEDIVNQAVLDNRKVKTTVK 623 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N E+A GA AL G KY+++VRVV VE S LCGGTH+SSTGEI L I+SES Sbjct: 624 NIEEAKKEGAIALFGEKYSEKVRVVCVEN-----FSQELCGGTHISSTGEIGLFKIISES 678 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S AGIRRIEAITG A + +KL +++ L N+ ++E E+ L+ Sbjct: 679 SSAAGIRRIEAITGISALKWVQDLQDKLSRISTLLNSPVKNIESKLEATLEQISALEREL 738 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K + + + K + + + +ELK+ + L+ K+Q I +L Sbjct: 739 KSAKAKEEEKFVQELLSKATKQENYLLIKAQTEFDNLEELKTTAEQLKTKMQGTIAVLFN 798 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + ++ K ++L VV+ DL+ ++NA + A L G GGGR +A +GG + + Sbjct: 799 LYQD-KLNILCVVSADLIPKYNAGKIVAKLANELK-GKGGGRTDIAMAGGKDIANLASVM 856 Query: 890 AGVASFL 896 V + Sbjct: 857 EKVPEII 863 >gi|149194975|ref|ZP_01872068.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2] gi|149134896|gb|EDM23379.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2] Length = 846 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 354/891 (39%), Positives = 512/891 (57%), Gaps = 52/891 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FL+FF+ GH++ PS+ L+P +DP+L+FTN+GMVPFK IFTG++ P T+ Sbjct: 2 DIRKKFLDFFESKGHKVYPSAPLVP-DDPSLLFTNAGMVPFKPIFTGEKPAPTPPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI AW+ +T+ LD+ R Sbjct: 61 QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLKLDKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT+++ D+EA K+W+K +S D+I+++ DNFW M +TGPCGPCSEI +DQGE Sbjct: 121 LWITIHESDDEAGKIWQKY--VSKDRIVKMGDKDNFWQMGDTGPCGPCSEIHYDQGEKFN 178 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 EG+R++EIWNLVFMQ+ + + LP+ SIDTGMGLER+ V + +NY Sbjct: 179 SSEDYLGGEGDRFLEIWNLVFMQYNRDESGKLTPLPRPSIDTGMGLERITAVFEGVESNY 238 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 + +FK LIQ ++TG +Y + +HRVI DH+R+ SFL+A G+ EGRGYVLRR Sbjct: 239 ETSIFKPLIQKVVEITGKEYFKDKRGASHRVIADHIRAVSFLVAQGVRFDREGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RR + + +LG EP M ++ L +M YP L + K I+E ++ E+ERF +T+D Sbjct: 299 ILRRGVRHGYMLGMKEPFMYKIVDTLANQMKDNYPYLEEKKEAIKEAIKIEEERFFETID 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G+ L LS I +G+VAFKLYDT+G PLD+ QD+L +DI +F++ ++ Sbjct: 359 KGMALFKEELSKTT-GNIFSGEVAFKLYDTYGFPLDLTQDMLREVNKK-VDIETFDRLMK 416 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ+ RARA+ G G KI EKY +F+GY+ Sbjct: 417 EQKERARANWKGSGDK---KINLKDLEKYPPNKFVGYEKTSH------------------ 455 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + +KA+ E E V+ ++TPFYAE+GGQ+GD G + L+I Sbjct: 456 -----KTKIKALF-DEEFNEVDKLNGSGWVMLEETPFYAESGGQVGDRGELRIENGELRI 509 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 V K + + VE+ L+ ++ +D R ++ +HSATHLLH AL +LG Sbjct: 510 NVVDTKKFDE-RNLSKVEKAKLKVGDEVLAVVDESRRE-IAKHHSATHLLHSALRKVLGE 567 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 H++Q GS + + LRFD TH K ++ EL IE+ VN +IA+ M+ ++A G Sbjct: 568 HITQAGSLVEANRLRFDFTHPKALSKEELNKIEEMVNRVIARGFEGEVSEMSIDEAKKLG 627 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVV G S LCGGTHV +T EI YIV ES + AG+RRI Sbjct: 628 AMALFGEKYGDIVRVVKF-----GDFSIELCGGTHVKNTSEIGSFYIVKESGVSAGVRRI 682 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G A + + ++ L S K + + + E +E K K Q V Sbjct: 683 EAVVGYSAYEYGKNYRDLVEELKSKNKTND---LDKFIEKQKEEIKKLKEEIKSLKQAAV 739 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 +++ +NF+ I + L+ + L+ ++ + + L+G +K K + + V+ Sbjct: 740 KEIKPINKDGINFVIERIDNAN---LREIATDLKGRVDNLVTFLIGENK-GKVNFVA-VS 794 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + + A DL + A ++ GG GGG+P AQ GG + + D+ I V Sbjct: 795 K--VKDIKAGDLIKEFAPIV-GGKGGGKPDFAQGGGKDIERIDEVIKKVKE 842 >gi|154250174|ref|YP_001410999.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1] gi|205830091|sp|A7HN59|SYA_FERNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|154154110|gb|ABS61342.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1] Length = 867 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 368/907 (40%), Positives = 536/907 (59%), Gaps = 56/907 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +L FF+K GH+ LPS+SLIP +DP LMFT +GMVPFK IF G+ PVY V Sbjct: 4 MTSDEIREAYLSFFEKKGHKRLPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +TK ++ Sbjct: 63 TTCQKCVRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKQEAIEWAWEFVTKVLEMP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + +L+++VY+ D+EA+++W+K+ G+ KI+R++ DNFW TGPCGPCSEIF+D G Sbjct: 119 EEKLWVSVYEYDDEAYEIWRKL-GVPERKIVRMSKEDNFWGPAGPTGPCGPCSEIFYDTG 177 Query: 181 ECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +P G P + RYIEIWNLVF +F Q + LP+ +IDTG GLER++ ++ Sbjct: 178 VEVPVPEGQDPTPANTDGRYIEIWNLVFTEFYQDEEGNLHPLPRKNIDTGAGLERISAMM 237 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N+D DLFK +I++ E V + Y+ + V+ RVI DH+RS +F+IADG+LP+NE Sbjct: 238 QGVYWNFDTDLFKPIIESIENVLKVSYKSDKVKDVSIRVIADHVRSVTFMIADGVLPSNE 297 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + LLG EP + ++ ++ +MG YPE+++ + +E ++SE+ Sbjct: 298 GRGYVLRRVLRRALRHGVLLGAKEPFLYKIVDSVVQKMGKIYPEIVEKQSFVENIVKSEE 357 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +F L RGL ++ ++ ++ + AFKLYDT+G P+DI++DI G +D Sbjct: 358 LKFINNLSRGLEIVQKIV---TTSGKISAEDAFKLYDTYGFPIDILRDIATENGYE-LDE 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + LEEQR R+R G + + +L T F+GYD L Sbjct: 414 KGFEKYLEEQRERSRKA-QGEVEFAQKTGYENL---GIETVFVGYDTLVS---------- 459 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCA 534 S V I GE VE+A + E++ D TPFYAE GGQ+ DTG Sbjct: 460 -------------ESSVLKIRVNGEFVEKAEGNDLECELILDITPFYAEKGGQVADTGVI 506 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + V EGI VH G + + +D R+ NH+ATH+LH Sbjct: 507 KSQDGLFTVEYVYSPVEGIIVHRG-KLNGKISVNEKVQSQVDEIKRKSTMRNHTATHILH 565 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + P LRFD TH + +T E+ IE+ VN++I + +PVVT I Sbjct: 566 SALRKVLGSHVRQAGSLVEPTRLRFDFTHYQALTKDEITKIENIVNEVILKAIPVVTEIK 625 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + ++A+ GA AL KY D VRVV V S LCGGTHV +TGEI L IVSES Sbjct: 626 SYDEAVKEGAMALFEEKYGDFVRVVKV-----SDFSEELCGGTHVKNTGEIGLFKIVSES 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEAITG + +L +E + L L+ + +V ++++I EE + L+ Sbjct: 681 AVSAGVRRIEAITGLNSLEYLRTDEELFEKLKLLLEAPKSEIVEKIQKILEEKKNLEKEI 740 Query: 775 AKRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + K +L + K+ ++ ++ ++ +V+ LK ++D + +I+ GI++L+ Sbjct: 741 QEIKRKLINPEEIAKKVKEYNNIKYVVSVLEDVEPDILKDLIDNISDRIK-GIVLLISKM 799 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K V + V ++L +NA ++A+L +KVLGGGG GG P AQ+GG K D+A Sbjct: 800 SD-KIIVTVKVPKELTQDYNAGNIAKLVSKVLGGGG-GGSPTFAQAGGKLIEKIDEATEL 857 Query: 892 VASFLKK 898 ++K Sbjct: 858 FEKIIRK 864 >gi|270307496|ref|YP_003329554.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS] gi|270153388|gb|ACZ61226.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS] Length = 876 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 341/905 (37%), Positives = 519/905 (57%), Gaps = 47/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP +T Sbjct: 8 SSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC R D+++VG H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 68 SCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGE 181 RL++TVY +D+EA LWK+ G+S +I+R+ DNFW ++GPCGPCSEI +D G+ Sbjct: 123 ERLWVTVYLDDDEAIALWKEQ-GVSEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDFGQ 181 Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + + R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ ++Q Sbjct: 182 EMGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQS 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K N Y+ D+F +++ + Q++G KY + R++ +H R +FLIADG++P GR Sbjct: 242 KKNVYETDIFAPIVEKACQLSGKKYGCDTATDRALRIVSEHSRGITFLIADGVIPDKAGR 301 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + R LG +P ++ + A+ M YPEL + + + E + SE+ R Sbjct: 302 GYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELKKRQTYVLEMIASEEAR 361 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TL GL LL+ ++ + +I +G AFKLYDT+G P+++ +I RGL+ +D+ Sbjct: 362 FSETLATGLELLEEIVRQIKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDLGG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +E QR++AR+ T F+GY+L R Sbjct: 420 FEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEKTCFVGYELTRQ------------ 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + I+ +G V+ G + +V D++PFYAE GGQ+GDTG I Sbjct: 468 -----------KSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G R ++ + G+F+H V G L+ S ID + RR ++ NH+ATH+L AL Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVISGCLKISESAAAHIDEERRRDIARNHTATHILQTAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG V Q GS +TP+ LRFD +H +P+T E++ E+ VND I +NLPV M Sbjct: 577 RQVLGEQVQQRGSVVTPERLRFDFSHLRPMTKDEIRRAEEFVNDKIRRNLPVYAEEMPYR 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A+ G AL G KY DRVRV+ V S+ LCGGTHVS++GEI L IVSESS+ Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIVSESSVG 693 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG+ A +++ Q + L L+ L+ + + ++ E+ EE L+ Sbjct: 694 AGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESLRKLAELKEEIDTLKKTVQNL 753 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + Q++ + + + ++ V++ L+ D L+ K+ SG+I+L +S Sbjct: 754 ERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLRETADFLRDKLGSGVIVLGTVS- 812 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K L +VT DL+++ ++A ++ + +++ GGGG GG+P+MAQ GG + K D+A+ Sbjct: 813 EDKPFFLCMVTPDLIEKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKAKLDEALQA 871 Query: 892 VASFL 896 V L Sbjct: 872 VKGML 876 >gi|34556759|ref|NP_906574.1| alanyl-tRNA synthetase [Wolinella succinogenes DSM 1740] gi|44888324|sp|Q7MAD3|SYA_WOLSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|34482473|emb|CAE09474.1| ALANYL-TRNA SYNTHETASE [Wolinella succinogenes] Length = 855 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 335/893 (37%), Positives = 504/893 (56%), Gaps = 48/893 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FL++F GH + S L+P +DPTL+FTN+GMV FK+IFTG+ P T+ Sbjct: 2 DIRKLFLDYFASKGHAVYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPAPTNPRATSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFKE+AI AW+ +T+ + Sbjct: 61 QLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGDYFKEQAIDHAWEFVTEVLGFSKEV 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183 L++TV++ D+EAF+LW+K + A +I R+ DNFW M +TG CGPCSEIF DQGE Sbjct: 121 LWVTVHESDDEAFELWQK--HVDASRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGEEKF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+A + + K++N Sbjct: 179 HGSEDYFGGDGDRFLEIWNLVFMQYERSSDGTLTPLPKPSIDTGMGLERVAALKEGKSSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I+ E++TG Y + ++RVI DH+RS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPMIRKVEELTGKPYHYESGASYRVIADHIRSICFLLAQGVNFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG P + + +C +MG Y L + + I+ E+ERF T+ Sbjct: 299 ILRRAVRHGYLLGLNAPFLHEVAEVVCGQMGDHYGYLKEKREHIKRLTFQEEERFFATIA 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + L + +G+ AFKLYDT G PLD+ +D+L +G +D+ +F ++ Sbjct: 359 GGMEVFKKELEKT--QSVFSGEAAFKLYDTFGFPLDLTEDMLREKG-IRVDLAAFEACMK 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR+RA+A G G E + L E + + F+GY+ Sbjct: 416 EQRARAKASWKGSGDELKEGDFALLLEAFPSNSFVGYE---------------------- 453 Query: 484 LTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +S + AI+ + + V +G+ V+ ++TPFYAE+GGQ GD G G + Sbjct: 454 -KEAHTSKLLAILNRDYKRVSSLGAGESGFVMLEETPFYAESGGQCGDEGELRARGRIVA 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 KK G+ + + +L + + ++ +HSATHLLH L LG Sbjct: 513 QVQGTKKYFGLNLSRIEAL-DEICEGETLEAVVSRER-LEVQKHHSATHLLHAILRQKLG 570 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV+Q GS + D LRFD +H K +T E+ +E+ VN +I+ ++P TR M ++A AS Sbjct: 571 DHVAQAGSLVEKDRLRFDFSHPKALTHEEVGMVEEEVNRLISLSIPSRTREMRVDEAKAS 630 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY D VRVV D G S LCGGTHV ++ I YI ES + AG+RR Sbjct: 631 GAMALFGEKYGDLVRVV-----DFGEASVELCGGTHVENSAHIGSFYITKESGVSAGVRR 685 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G A + +++ LK + + +E++ E+ R+L+ + + Sbjct: 686 IEAVCGMAAYHYGKEALQEIAEAKEILKAKELKL--GIEKLKEQVRELKSEMSALSSSKS 743 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + + + + +++ ++K+ +D ++ + + ++L+ + KE+K + V Sbjct: 744 GAISEGVMMGETRVI---VETLEAGDIKNSIDEIKNRYEKVAVLLLQV-KEEKVMLAAGV 799 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 + DR A + A +LGGGG GGR AQ+GG + +KAD+A+ ++ Sbjct: 800 KGE--DRIKAGAWIKEIAPILGGGG-GGRDDFAQAGGKDASKADEALQSAKNY 849 >gi|218129222|ref|ZP_03458026.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697] gi|217988600|gb|EEC54920.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697] Length = 873 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 326/919 (35%), Positives = 482/919 (52%), Gaps = 73/919 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL + DI F+ +++Q+ RAR + W +L+E G T+F+GYD Sbjct: 419 ILRENDMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D+TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS + D LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + ++ G + + Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + +I V + + + + +K++ L+ Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAIKNIAFQLR 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 852 AGGKNPDGLSAAVDKVIEL 870 >gi|110637850|ref|YP_678057.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406] gi|123058839|sp|Q11V49|SYA_CYTH3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110280531|gb|ABG58717.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406] Length = 877 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 316/921 (34%), Positives = 489/921 (53%), Gaps = 72/921 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF GH+++PS+ ++ NDPTLMFTN+GM FK+ F G E P Y+ + Sbjct: 1 MTSAEIRQQFLDFFASKGHQIVPSAPIVNKNDPTLMFTNAGMNQFKDYFLGNETPKYRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI +W+LLT + L Sbjct: 61 ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWSWELLTSVYKLP 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T+++ D+ EA+ WKK ++ D+I+ DNFW M E GPCGPCS Sbjct: 121 KDRLYVTIFEGDDKEKLARDTEAYNFWKKW--IAEDRILLGNKKDNFWEMGEQGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + +EIWN VF+QF ++ LP +DTGMG Sbjct: 179 EIHVDLRTDEEVKAVDGKTLVNNDHPQVVEIWNNVFIQFNRKADGSLEELPDKHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ +Q+K +NYD D+F +I + G+KY + + RV+ DH+R+ SF+IA Sbjct: 239 FERLCMAIQKKKSNYDTDVFTPMIDFVAKAAGIKYGADEKTDIAMRVMADHIRAISFVIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L EP + L+ L ++ +PEL + Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLYKLVAVLADQLAHVFPELKSQQDF 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 + + ++ E+ F +TLD GL L+ + L + ++G AF+LYDT G PLD++Q I Sbjct: 359 VAKVVQEEEISFLRTLDIGLSKLEQIREELKAKKATTIDGKTAFELYDTFGFPLDLIQLI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D F+ + Q+ R++ + E +++ + +F+GYD L Sbjct: 419 ARENGLT-VDEAGFDTEMAAQKQRSKKA------ASVETSDWTIVTEDDEVEFVGYDHLI 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + + R+V + + ++V D TPFYAE+ Sbjct: 472 STSRIIKYRQVKTKGK----------------------------DQYQLVLDTTPFYAES 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ GDTG + ++++ + K+ I E+ + + ++ R Sbjct: 504 GGQAGDTGTLVQGDKKIKVLNTVKENNLIIHI---TEQLPADLKAPVDCKVNVLQRSLTE 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LGSHV+Q GS + LRFD +H +T ELK +E VN+ I Sbjct: 561 NNHSATHLLHAALKQVLGSHVNQKGSLVNESVLRFDFSHFSKVTEEELKKVELIVNEKIR 620 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N+ + R + E+A GA AL G KY + VR+++ + S LCGGTHVSSTG Sbjct: 621 ENISLNERRNVPIEEAKKLGAMALFGEKYGEYVRMITFDDS----FSRELCGGTHVSSTG 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I I SESS+ AG+RRIEA+T A + Q L + +K + ++V +E++ Sbjct: 677 KIGFFKITSESSVAAGVRRIEALTATAAEVFVDEQQTTLAKITELMK-NPKDLVKSLEDL 735 Query: 764 WEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE LQ K K + K+ D+N + + ++ V L++ Sbjct: 736 LEERIVLQKQLDEYQAEKSKAIAKSLKDTVEKVGDINVIRAKLVLPSVDAMRQVAYDLKQ 795 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + +++L ++ + K ++ ++++++L+ NA + R +K + GG GGG+P A Sbjct: 796 TVDNLLLVLA-VNVDGKPNIAVMISDNLVADKGLNASQMIRELSKEIQGG-GGGQPFYAT 853 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N D+ IA ++ Sbjct: 854 AGGKELNGLDKVIAKSKDLIQ 874 >gi|189463200|ref|ZP_03011985.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136] gi|189430179|gb|EDU99163.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136] Length = 872 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 485/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI A++ L L Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W + D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+A ++G KY + V RV+ DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKAIGDLSGKKYGDDEKVDVTMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M LLP L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLLPVLIENMGGAYPELKAQQA 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD ++ ++G AF LYDT G P D+ + Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLDKTMAETKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL GL D+ F +++Q+ RAR + W +LKE G T F+GYD Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + + I D +K+ ++ E ++ +D R Sbjct: 503 SGGQIGDTGVLVSEFETIDIIDTKKENNLPIHI---AKKLPEHLEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TPD LRFD +H + +T +++ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGAHVEQKGSLVTPDSLRFDFSHFQKVTPEQIREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHVS+T Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SESS+ AGIRRIEA+TG + + + L + + ++ + + Sbjct: 674 GKIGMVKIISESSVAAGIRRIEAVTGAKVEEMFDTVQDAINDLKALFNNAP-DLKAAISK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K L +I V + ++ + + +K++ L+ Sbjct: 733 YIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIQAVLP-MPADAVKNIAFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + +++G E K + + +++D + NA L R +AK++ GG GGG+PH A Sbjct: 792 GQFPENLFVVIGSVFENKPLLTVTMSDDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ + S Sbjct: 851 AGGKNPDGLSAAVDKIVSL 869 >gi|332176358|gb|AEE12048.1| alanyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707] Length = 872 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 333/918 (36%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR FL+FF+++GH ++PS+ ++ +DPTLMFTN+GM FK+I G ++P Y+ Sbjct: 1 MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI+ AW LT+ L Sbjct: 61 AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+TV+ D+EA W + + + D+II + DNFW M +TGPCGPC Sbjct: 121 PKDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ IEIWNLVFMQ++++ LP IDTGM Sbjct: 179 SEIHIDLRSEEERQAVCGRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ +Q K +NYD DLF LI+A E ++G +Y N + RV+ DH+R+ +F I Sbjct: 239 GFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ YA L EP++ LLP L MG AYPE++ + Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDI 404 LI ++ E+E F +TL +GL LL+ + L +D ++L+G AF LYDT+G PLD+ + I Sbjct: 359 LIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L RG+ +D ++F++ ++EQ+ + W L E+ + F+GY+ L+ Sbjct: 419 LSERGMT-LDQVAFDKLMQEQK-----SRARQAAAIDAADWEVLDEETTESTFVGYETLQ 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RKV +K +VV +TPFYAE Sbjct: 473 IETHILRYRKVADKKRSY----------------------------YQVVLAETPFYAEM 504 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G I K+ + VH + + + + R Sbjct: 505 GGQIGDKGVLIAQDGTEYPIIDTKRENNLPVHIL--STLPANPKQPFIARVGDELRHLTE 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHL+HHAL +LG+HV Q GS ++ D LRFD +H K +T E+ +E VN I Sbjct: 563 ANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIR 622 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + P R + A GA AL G KY D VRV+ S LCGGTHV+STG Sbjct: 623 ADRPRDEQRNVPIAKAKEMGAMALFGEKYGDEVRVIKYGD------SVELCGGTHVASTG 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I I+SE SI AGIRRIEA+TG +A ++ +E+L+ L + ++ + Sbjct: 677 QIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL-KALDRL 735 Query: 764 W----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+ + ++ + Q+ ++ L+ + + + S K V ++++ Sbjct: 736 IAEGAEQRKAIEQYTKAQAEQIALQALADQTKRGETTIVTVNKPMSSDVAKDVAGTIRER 795 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +Q + L+G ++E K ++ ++++ DL+D+ NA L + A ++ GG GGG+PH A +G Sbjct: 796 LQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLIKGG-GGGQPHFATAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N AI + S + Sbjct: 855 GRNPEGLQAAIDHIVSLI 872 >gi|159900152|ref|YP_001546399.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|205830067|sp|A9B660|SYA_HERA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|159893191|gb|ABX06271.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 889 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 342/904 (37%), Positives = 494/904 (54%), Gaps = 56/904 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL++F + GH ++PSSSLIP ++PTL+FT +GMV F ++F G+E Y Sbjct: 1 MKGSELRQRFLDYFARQGHAVVPSSSLIPADNPTLLFTVAGMVQFNDVFLGRESRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+R GK NDL+NVG + RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E LD Sbjct: 61 VSSQKCLRISGKQNDLENVGPSPRHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTQEIGLD 120 Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 +R+++++Y+ DEEA LW + + A++I+R DN WS + GP GPCSEI Sbjct: 121 PKRMWVSIYEGDEQIPADEEAHDLWL--AYMPAERILRFDAKDNLWSAGDVGPRGPCSEI 178 Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + G+ +P + E + Y+EIWNLVFMQ+ + +LPK SIDTGM LER+A Sbjct: 179 HYYIGDDPDNQVPEGVNSEDDTYMEIWNLVFMQYNRDENGVLTLLPKPSIDTGMSLERLA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 V Q +Y+ DLF +I ++ G + N + V+ DH RS +F+IADG+ P Sbjct: 239 IVKQGVFRSYETDLFTPIIHTVMELLGTGSDHYQANSSAYHVVADHSRSIAFMIADGLRP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGR YVLRR++RRA + + +G+ P + + + MG+AYPEL + I E + Sbjct: 299 GNEGRSYVLRRLVRRAAYFGQTIGFKAPFLAETIATVIDMMGAAYPELRSKQAYIAEVVT 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF KTL GL L+ +L + + +G AFKLYDT+G PLD+ + I+ RGL Sbjct: 359 GEEERFNKTLAGGLRQLEAMLPNQADKAVFSGADAFKLYDTYGFPLDLTERIVAERGLT- 417 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ + LE QR+R R + TE+ W T F GY+ L Sbjct: 418 VDLAGYEAELEAQRARGRGAAQFKKGAVTER-WAE--RNLAPTSFTGYNELESW------ 468 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V A+ GE + GQ+V V D+TP YAE+GGQ+GD+G Sbjct: 469 -----------------GHVLALEFDGEELGTVQRGQEVAFVLDRTPCYAESGGQMGDSG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G + I DVQK G+FVH V +G + + +T+D RR + NH+ATHL Sbjct: 512 VLVGPHGTIVIDDVQKPVPGVFVHRGKVSKGSVSLGEQVTVTVDAARRRDIVRNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG H Q GS + P+ LRFD + K ++S +L+ IED VN I + V Sbjct: 572 LHRALRDTLGDHAEQKGSLVAPERLRFDFNNQKGLSSEQLQQIEDQVNAWIRADSKVEAA 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSST 702 M A GA AL G KY D VRVV+V + S LCGG HV+ T Sbjct: 632 EMALPQARELGAMALFGEKYGDVVRVVTVGCGNASDHIHTNSEAPVCSRELCGGVHVART 691 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 GEI IVSE S+ +G+RRIEA+TG+ A + Q + +++L L G V +++ Sbjct: 692 GEIGFFKIVSEGSVASGVRRIEAVTGRAAAEWVSQQAQLIRTLGDKLGAQPGKVEEKLDA 751 Query: 763 IWEEYRKLQLIHAKRKLQLNV---EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817 + + + + + + ++ + L KI A + + D+ + + + L+ Sbjct: 752 LLLDQKARRDEIERLRGEIAAGQVDSLLAQKIEQAGTPLVVARVEASDADSFRRLGEQLR 811 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 KI SG+++L G + K +L T D + +A +L + A +GGGG GGR AQ Sbjct: 812 DKIGSGVVIL-GTVIDGKPLLLAAATADQVKAGRHAGNLVKALAAKVGGGG-GGRADFAQ 869 Query: 877 SGGP 880 +GG Sbjct: 870 AGGR 873 >gi|147668699|ref|YP_001213517.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1] gi|205830043|sp|A5FSU1|SYA_DEHSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146269647|gb|ABQ16639.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1] Length = 871 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 336/907 (37%), Positives = 512/907 (56%), Gaps = 47/907 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP Sbjct: 1 MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + + QKC R D+++VG H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 61 MASCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQ 179 RL+ITVY +D+EA LWK+ G+ ++I+R+ DNFW ++GPCGPCSEI +D Sbjct: 116 PAERLWITVYLDDDEAIALWKEQ-GVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174 Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ G + + R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ ++ Sbjct: 175 GQETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K N Y+ D+F +++ + ++G KY + R++ +H R +FLIADG++P Sbjct: 235 QSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKA 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + R LG P ++ + A+ M YPEL + + + E + SE+ Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF +TL GL LL+ ++ I +G AFKLYDT+G P+++ +I +GL+ +D+ Sbjct: 355 ARFSETLATGLELLEEIVRQTKGGRI-SGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDL 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E QR++AR+ T F+GY+L Sbjct: 413 DGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAEKTCFVGYEL------------- 459 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S +K I+ +G V+ G + +V D++PFYAE GGQ+GDTG I Sbjct: 460 ----------AIQKSTIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D R ++ + G+F+H V G L+ + I+ + RR ++ NH+ATH+L Sbjct: 510 TDAGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQT 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG V Q GS +TPD LRFD +H KP++ E++ +E+ VND I +NLPV M Sbjct: 570 ALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMP 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A+ G AL G KY DRVRV+ V S+ LCGGTHV+++GEI L I+SESS Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESS 686 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TG+ A + + Q + L L+ L+ + ++ E+ EE L+ Sbjct: 687 VGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQ 746 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + Q++ + V + ++ V++ L+ D L+ K+ SG+I+L G Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GT 805 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K L +VT DL+ + ++A ++ + +++ GGGG GG+P+MAQ GG + +K D+A+ Sbjct: 806 VTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKSKLDEAL 864 Query: 890 AGVASFL 896 V + Sbjct: 865 QAVKGMI 871 >gi|317475197|ref|ZP_07934464.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA] gi|316908650|gb|EFV30337.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA] Length = 873 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 483/919 (52%), Gaps = 73/919 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADSSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI F+ +++Q+ RAR + W +L+E G T+F+GYD Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D+TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS + D LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + ++ G + + Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + +I V + + + + +K++ L+ Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAIKNIAFQLR 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 852 AGGKNPDGLSAAVDKVIEL 870 >gi|224025892|ref|ZP_03644258.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM 18228] gi|224019128|gb|EEF77126.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM 18228] Length = 872 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 325/919 (35%), Positives = 481/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ I A++ L L Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAYEYLVTVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W + D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTVFEGSPEEGLARDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ ++G KY + V RV+ DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKVDVAMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M L+P L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LL+ + + ++G AF LYDT G P D+ + Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNEAKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL GL D+ F +++Q+ RAR + W +LKE G T F+GYD Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLSDTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + + I D +K+ ++ + ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIDIIDTKKENNLPIHI---TKKLPEHLDAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TPD LRFD +H + +T +L+ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPDSLRFDFSHFQKVTPEQLREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHVS+T Sbjct: 620 RENIPLTEYRNLPIEKARELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SESS+ AG+RRIEA+TG + + L L + + ++ + + Sbjct: 674 GKIGMVKIISESSVAAGVRRIEAVTGAKVEEIFDTVQDTLSDLKALFNNAP-DLKAAISK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K L I V + ++ + + +K++ L+ Sbjct: 733 YIDENAGLKKQVEEFMKEKEASVKNKLIEGAKDINGVKVIKAVLP-MPADAVKNIAFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + +++G + K + + ++ED + NA L R +AK++ GG GGG+PH A Sbjct: 792 GQFTENLFVVIGSVFDNKPLLTVTMSEDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNPDGLSAAVDKVIEL 869 >gi|206896025|ref|YP_002246808.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] gi|206738642|gb|ACI17720.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] Length = 876 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 338/902 (37%), Positives = 514/902 (56%), Gaps = 50/902 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR+ +L FF++ GH LPSSSL+P +DPTLMFT++GMV FK F GQ +P + + Sbjct: 3 MSGDEIRSVYLSFFEEKGHLRLPSSSLLP-DDPTLMFTSAGMVQFKPYFLGQAQPPAKRI 61 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TTVQKC+R G DL+NVG T+RHHTFFEMLGNFS G YFK+ AI AW+L+T+ F L Sbjct: 62 TTVQKCLRTG----DLENVGHTSRHHTFFEMLGNFSIGDYFKKEAILWAWELVTQRFKLP 117 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180 RL++T+Y +D+E+F +W + GL ++I+R+ +NFW TGPCGPCSEI +D G Sbjct: 118 PERLWVTIYQDDDESFDIWHNLVGLPENRIVRMGKEENFWGPPGPTGPCGPCSEIHYDMG 177 Query: 181 ECIPGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E P P + EGER+ E WNLVF Q+ Q LP+ +IDTGMGLERMA ++Q Sbjct: 178 EEWPCDDPSKGPAAEGERFREFWNLVFTQYYQDENGNLSDLPRKNIDTGMGLERMAAIMQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K N++ DLF+ +I+A Q+TG KY N+V RVI DH+R+ +F I DG +P+NEGRG Sbjct: 238 GKPTNFETDLFQPIIEAIGQLTGKKY-EENLVAFRVIADHIRALTFAITDGAVPSNEGRG 296 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV+RRI RR++ Y LG EP + +++P + + YPELI + L + ++ E+E F Sbjct: 297 YVIRRIARRSVRYGLQLGKEEPFLYNIVPVVVEHYKNWYPELIGGQDLSMKLIKQEEEAF 356 Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL LD ++ + K I + + F+LYDT+GLPLDI+ D+L L+ D Sbjct: 357 LRTLSSSQRYLDELVQQMKKQGIKEVPAEEVFRLYDTYGLPLDIIDDVLQENNLST-DKE 415 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 NQ +E+ + ++RA G + T+ I+ L T+F GYD L Sbjct: 416 KLNQIIEQYKEQSRASWKGGEAVLTDTIFTRLVGNI-KTEFTGYDQLED----------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 SS + A V+ E G + ++ + TPFYAE+GGQ D G Sbjct: 464 ------------SSTIIATVKDNSR-TELHEGDEGAIIVEHTPFYAESGGQEADHGIITT 510 Query: 537 DGIRLQITDVQKK-AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++ DVQK + VH+ V G+++ L +D + R+ + H+ATHLLH Sbjct: 511 ETGTFRVDDVQKVLGGNVIVHYGQVTSGVIKEGQQAFLQVDIERRKAMQRAHTATHLLHA 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD RFD +H + ++ A+++ +E VN+ + +N V + Sbjct: 571 ALRRVLGDHVRQGGSKVGPDWFRFDFSHFESMSPAQIQEVERLVNEQVLENKEVNIFFTS 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A GA AL G KY + VRVV V S LCGGTH TG+I L +I+SES+ Sbjct: 631 LDEAKKMGAMALFGEKYGETVRVVEVP-----DWSMELCGGTHAKRTGDIGLFHIISESA 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 GIRRIEAITG++A HL ++ +K +A L S+ VV +++++ ++ ++ Sbjct: 686 SSQGIRRIEAITGKKALEHLWNLEKLVKDVAEELDTSKDMVVQKLQKLNQDLKEKDKEIK 745 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 +++ + +I + F++ + D L +DA++ + +G Sbjct: 746 HLIERVHTAEGKELFTKAEEINGIKFINAVFPPRDPSALIIAVDAMRS-FNKPFVAALGT 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +K +++ + D+ ++ N ++ ++A + GG GGGRP + Q+GG + ++ A+ Sbjct: 805 LNNEKPVLVLAASPDVAEKVNLREVVNMAASYI-GGKGGGRPTLVQAGGTDASRLSVAVQ 863 Query: 891 GV 892 Sbjct: 864 QA 865 >gi|86151665|ref|ZP_01069879.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315124034|ref|YP_004066038.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841294|gb|EAQ58542.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315017756|gb|ADT65849.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 842 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 346/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + V+ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ V+++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V + A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|300770787|ref|ZP_07080665.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300762344|gb|EFK59162.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 893 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 323/919 (35%), Positives = 500/919 (54%), Gaps = 71/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL FF+ H+++PS+ ++ NDPTLMFTN+GM FK+ F G+ +P Y + Sbjct: 23 MTNREIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKYSRI 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 Q+C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+LLT + LD Sbjct: 83 ADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTVVYKLD 142 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T+++ D+ EA+ WK +S D+I+ DNFW M ETGPCGPCS Sbjct: 143 KDRLYVTIFEGDDSEGLVKDTEAYDFWKSW--ISEDRILLGNKKDNFWEMGETGPCGPCS 200 Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI +D G + + + IEIWNLVFMQF + LP +DTGMG Sbjct: 201 EIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGMG 260 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ +Q K++NYD D+F+ +I Q G++Y + + RV+ DH+R+ SF IA Sbjct: 261 FERLVRAIQGKSSNYDTDVFQPMIAFIAQKAGIQYGADERTDIAMRVLSDHIRAVSFAIA 320 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L + P + L+P L E + ELIQ + Sbjct: 321 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFINELVPLLAKEFEGVFDELIQQQDF 380 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++ + E+ F +TL G+ + + + G+ AF+L+DT+G P+D+ + + Sbjct: 381 VQKVVLEEEVSFLRTLVTGVQRFESYAES---NTAVGGEFAFELFDTYGFPIDLTELLAR 437 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ +D+ F +AL+ Q+ R+RA + W ++ E +F+GYD L+ + Sbjct: 438 EKGME-VDMAGFQEALQIQKDRSRAA-----TAIDTGDWVAVSED-DQVEFVGYDNLKAT 490 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RKV A ++ ++V TPFYAE GG Sbjct: 491 TEIVKYRKVT----------------------------AKGKEQYQLVLSVTPFYAEGGG 522 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD+G + + +I K E + H ++ E + +D Q R N Sbjct: 523 QVGDSGVLLSESTGEKIYITDTKKENGLIVH-FTNTLPVQMEGTFEAKVDVQKRLDTENN 581 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL +LG+HV+Q GS + D LRFD++H +T ELK +ED VN I +N Sbjct: 582 HSATHLLHAALKEVLGTHVNQKGSLVNADILRFDISHFAKVTEEELKQVEDIVNAKIREN 641 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +P+ R + + A+ SG AL G KY D VRV++ + + S LCGGTHV +TG+I Sbjct: 642 IPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVITFDDQ----FSKELCGGTHVKATGQI 697 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I+SES++ AG+RRIEAITG + + + + + L L + + V + ++ + Sbjct: 698 GFFKIISESAVAAGVRRIEAITGTKCAAVIREHFDLVHRLGELLH-NPKDFVSTLSKVID 756 Query: 766 EYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E L+ K ++ ++ + +I VNF++ + +++ LK++ AL+ + Sbjct: 757 ENSALKKEIEKSIIEKSLALKSDLEQKIQQIDGVNFLATQVELPNAEALKTLAYALKGAV 816 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + ++L G + K ++ +VV++ L NA + R AK + GG GGG+P A +G Sbjct: 817 DNLFLVL-GADFDGKPNLTVVVSDQLSKERGLNAGTIVRELAKEINGG-GGGQPFFATAG 874 Query: 879 GPNGNKADQAIAGVASFLK 897 G N AIA ++++ Sbjct: 875 GKNPEGLPAAIAKAKNYIQ 893 >gi|226227321|ref|YP_002761427.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27] gi|226090512|dbj|BAH38957.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27] Length = 928 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 353/952 (37%), Positives = 507/952 (53%), Gaps = 109/952 (11%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--YQ 59 N S IR+ FL FF+KNGH + PSSSL+P +DPTL+FTN+GMV FK +F G E+ + Sbjct: 1 MNASEIRSRFLAFFEKNGHAIRPSSSLVPADDPTLLFTNAGMVQFKKVFLGMEEAPDGKR 60 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TT QKCVRAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK AI+ AW+ +T++ Sbjct: 61 RATTSQKCVRAGGKHNDLEQVGHTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFITEDLK 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD- 178 + + L +TV+ ED+EA +LWK ++ + ++I + DNFW MA+TGPCGPC+EI+ D Sbjct: 121 IPREHLRVTVFHEDDEARQLWKDVADVPENRIYGLGAKDNFWQMADTGPCGPCTEIYVDL 180 Query: 179 --------------------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI 218 + E E R++EIWNLVFMQF++Q Sbjct: 181 AKLAADWAFPADATGEWTNTEIEDYSLDAFVEGAEAGRFLEIWNLVFMQFDRQADGTLVP 240 Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------- 267 LPK S+DTG GLER+A V+Q TNN+ DLF+ LI E V G+ Y Sbjct: 241 LPKPSVDTGAGLERIAAVMQGVTNNFHTDLFRPLIAKVEDVVGIGYPYRPGVGLGKAYAK 300 Query: 268 -----NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322 + + RV+ DH R+ FL+ADG+ P+NEGRGYVLRRI+RRA+ +A LLG EP + Sbjct: 301 DGQEIDPASFRVLADHARAVGFLLADGVFPSNEGRGYVLRRILRRAVRHAWLLGRREPTL 360 Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS------HL 376 +H++ L M YPEL + I ET R+E++RF T+D G+ + + Sbjct: 361 VHVVEVLIDTMRDLYPELHVRRKHILETTRAEEDRFLTTIDAGMSRFEELAPAASTQGST 420 Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436 L+G+ AF+LYDT G P+D+ + RG +DI F ++L+ QR +++ Sbjct: 421 TMRGTLSGEDAFRLYDTFGFPIDLTDLMARERGY-LVDIAGFERSLQAQRKQSQEDRKSR 479 Query: 437 GSGTTEKIWFSLKEKYGATQ-------FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489 + + Q F+GY+ + Sbjct: 480 QITVSADDFADPTHWTHDQQHQAALGRFVGYETTE-----------------------IE 516 Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549 +IV A V + G +V V+ +TPFYAE+GGQ+ D G G+G +++ +V+K Sbjct: 517 TIVTA-------VRQLPDG-RVAVMLRETPFYAESGGQVSDHGTITGEGWTVEVNEVRKL 568 Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609 I + + RR +H+ATHLLH AL +LG HV Q G Sbjct: 569 DGRIAAIGSSTGE---IIFGRAHAVVPRDRRRDTERHHTATHLLHAALRKVLGDHVHQAG 625 Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669 S +TPD LRFD TH P+T+ +L +IE +VN + Q+ PV TR + DA+A GA AL G Sbjct: 626 SLVTPDRLRFDFTHHGPVTAEQLAAIEADVNAGVWQSAPVNTREESYVDAVAHGAMALFG 685 Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 KY D VRVV + S LCGGTHV +T EI L+ +++ES + AG+RRIEA++G Sbjct: 686 EKYGDVVRVVEIPSL-----SVELCGGTHVRNTAEIGLVRVINESGVAAGVRRIEAVSGP 740 Query: 730 RARSHLMGQDEKLKSLASFLKVS-------QGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 RA L ++ L +AS LKV + +++ + +E ++L+ + Sbjct: 741 RAFQFLADRERALLQVASRLKVPMSGMTSGAEQIERKLDALMDERKQLEKRLEESLRGGG 800 Query: 783 VED-------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 F++ + D K L+++ DA+++ + SG+ +L + K Sbjct: 801 AGGGLAQQLIAKAIDAGGTRFIAAKVDVPDVKALQALGDAVREALGSGVAVLGAALADGK 860 Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++L V T+D DR A + R A + GG GGG+PHMAQ+ G + D Sbjct: 861 GALLAVATDDARDRGLRADAVVRDVAATV-GGRGGGKPHMAQA-GVEPGQID 910 >gi|302335910|ref|YP_003801117.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084] gi|301319750|gb|ADK68237.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084] Length = 880 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 348/905 (38%), Positives = 507/905 (56%), Gaps = 44/905 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF+ G L PSSSL+P DP+L+ TN+GM FK + G + Sbjct: 8 MTTAEIREDYLRFFESKGCRLYPSSSLVPE-DPSLLLTNAGMNQFKEYYQGTKTMREIGA 66 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QKC+R ND+DN+G +RH +FFEMLGNFSFGGY K AI AW+ +T + Sbjct: 67 TSCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKADAIAWAWEFITAAEHLG 121 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + RLY+TV+++D+EA +LW G++ D I R+ DNFW+ TGPCGPCSEI+FDQ Sbjct: 122 LPKDRLYMTVFEDDDEAIELWHAQ-GVAYDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G P ++GERY+E WNLVF Q+++Q LP +IDTGMGLER+A ++Q Sbjct: 181 GPAFEGERP--GDDGERYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +NY+ D+ + LI EQ+ G++Y + R++ DH R+ +F+I DGILP+NEGR Sbjct: 239 EGSNYEGDVLRTLIGVGEQLAGVRYREGAATDTSLRILADHSRAVTFMIGDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + RL+G + + M YP+L++ + LI+ + +E+ER Sbjct: 299 GYVLRRLLRRAVYHGRLMGVHGSFLPTYAHEVTRLMADVYPQLVENQALIDGIISAEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 FG TLD G L L L E L+G+VAF+L+DT+G P+D+ ++I A G +D+ + Sbjct: 359 FGATLDAGEGNLTAALGRLDAGEALSGEVAFRLHDTYGFPIDLTREIAAAAGHE-VDMAA 417 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ A+ +QR RAR + G + +W SL ++ G T+F GYD Sbjct: 418 FDGAMAKQRERARQAANRDAWGASNNVWVSLSDRLGETEFCGYDEDTVEG---------- 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + V AIV+ G V+ A G+ VEVV D+T FY E GGQ GD+G + + Sbjct: 468 ------------ARVLAIVRDGSEVDVACRGEHVEVVLDRTSFYGEMGGQQGDSGKLVCE 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L ++D + + G H V G LR S+ ID+ R + NH+ATHLL AL Sbjct: 516 DATLAVSDAKHRDGGFVSHVGEVTAGELRVGESVRAVIDHGRRELIRRNHTATHLLDAAL 575 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HVSQ GS + P LRFD TH + +++ E+ +E VN I PVVT +M E Sbjct: 576 KRVLGDHVSQAGSLVGPSRLRFDFTHFEAMSAEEMARVEGMVNAEIFAAEPVVTTVMGIE 635 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A ASGA AL G KY D VRVVS D S LCGGTH +T E+ L IVSE S+ Sbjct: 636 EAKASGAVALFGEKYGDVVRVVSTGASD-EPFSRELCGGTHARNTAELGLFKIVSEGSVG 694 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 + +RR+EA+T A +L + ++ +A+ L+ +V RVE++ E + + Sbjct: 695 SNVRRLEAVTSMGAIEYLDERLAQIDQVAAGLRCRPSDVAARVEQLKAEKAETEHKLRAA 754 Query: 778 K---LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 V D I + + V KEL+S D+++ ++ ++ Sbjct: 755 LTGGSSNAVADAIASAIDRGAYRLVLARLDGVSGKELRSAWDSVRDRLGVDCACVLASES 814 Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +L T+ + F+A D+ R A ++GG G GG+P MAQ+GG + + D A+ Sbjct: 815 DGKVGLLAAGTDGAVSAGFSAGDIIRSVAGLVGGRG-GGKPAMAQAGGSDPSGIDAALEE 873 Query: 892 VASFL 896 L Sbjct: 874 AGRLL 878 >gi|260361824|ref|ZP_05774840.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030] gi|308114481|gb|EFO52021.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030] Length = 788 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 349/832 (41%), Positives = 485/832 (58%), Gaps = 67/832 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 3 MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT L Sbjct: 63 TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173 RL +TVY+ D+EAF +W K G+ AD+IIRI DNFW M +TGPCGPC+ Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG P E+G+R+IEIWN VFMQF + LPK S+DTGMG+ER Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+EEQR RAR G + + + T+F GY Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGY------------ 460 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 461 -----------VGTKGSSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 EIRTEAGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AGIRRIEA+TG+ A + Q K + ++ E ++ + L+ Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQAAKYEE--------------KLAESAQKAKTLEK 729 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 K K ++ + ++ + + DSK L++++ + K Sbjct: 730 ELQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVTTSRTK 781 >gi|205830053|sp|A6TQZ4|SYA_ALKMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 880 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 337/908 (37%), Positives = 528/908 (58%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR FL+F+++ H + S L+P ND +L+ N+GM P KN F+G E P + + Sbjct: 4 MGLNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R G D++NVG+T+RH TFFEMLG+F+FG YFK +IQ W+ TK ++ Sbjct: 64 ATCQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +++ +VY+ED+EA+ +W+ + ++I+R+ DNFW + GPCGPCSE++FD+G+ Sbjct: 120 EDKIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGD 178 Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + +R++E WN VF QF++ +LP +IDTGMGLER+A ++Q+ Sbjct: 179 KYSCGHDDCKPGCDCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVACIMQD 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +++D KH++ + T +Y + ++ R+I DHLRS +F+I DGILP+NEGR Sbjct: 239 VDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG ++ + L+ + G AY EL++ K I++ ++ E++R Sbjct: 299 GYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQVEEDR 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+ +GL +L+ + + + +LNG AFKLYDT+G PLD+ ++IL R + +D Sbjct: 359 FQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT-VDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR+RAR G + ++ F +K T F GY+ LR Sbjct: 418 SEFESEMEKQRNRARKARSGGDTEGWKEDAFDALDKNIQTSFKGYETLR----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V AI+++ + V +G++V +V D+TPFY E+GGQ+GD G Sbjct: 467 ------------AEGKVLAIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGDIGHIF 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D Q+ D ++ + + RGIL+ S+ +D + R NH+ATHLLH Sbjct: 515 KDEFEGQVLDTKQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTATHLLHK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL I+G HV Q GS +TP+ LRFD +H + ++SA+L +E VN I L V T + Sbjct: 575 ALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNVDTVEAS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL G KY D VRVV G +S LCGGTHV ++ EI I+SE+ Sbjct: 635 LEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFLILSETG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TGQ A H+ + ++ + S LK + RVEE+ +E ++ Sbjct: 690 VAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKEKDKELQ 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L + + I N + H E ++L+++ D+L++KI SG+I L Sbjct: 750 QLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGVIALGAE 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + KAS + T+D++++ ++ ++ R AK+ GGGG GGRP MAQ+GG N K A+ Sbjct: 810 SND-KASFFVTATKDVVEKGVHSGNMIREVAKIAGGGG-GGRPDMAQAGGKNPEKIQSAL 867 Query: 890 AGVASFLK 897 + V LK Sbjct: 868 SIVKGLLK 875 >gi|307243232|ref|ZP_07525403.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] gi|306493360|gb|EFM65342.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] Length = 878 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 330/906 (36%), Positives = 515/906 (56%), Gaps = 49/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR+ F +FF+ H + S SLIP ND +L+ NSGM P KN F+G E P ++T Sbjct: 6 LNEIRSRFTKFFESKEHYIAKSHSLIPSNDKSLLLINSGMAPLKNYFSGVEIPPKNRMST 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQKC+R G D++NVG T RH TFFEM+GNFSFG YFK+ AI AW+ +T ++ + Sbjct: 66 VQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKEAIAWAWEFITVWLEIPEE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TVY+ D+EA+ LWK + G +KI+R+ +DNFW + GPCGPCSEI+FD+GE Sbjct: 122 KLWVTVYESDDEAYNLWKDMIGFPEEKIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGEKY 180 Query: 184 PGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + +R++E WNLVF QF+++ L +IDTGMGLERMA V+QE Sbjct: 181 GCGCEDCKPGCDCDRFLEFWNLVFTQFDRKEDGSYGELDHKNIDTGMGLERMACVMQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +++D + ++ Q+ G+ Y + + R+I DH+RS +F++ DGILP+NEGRGY Sbjct: 241 TIFEVDTIRSVLNRVCQLAGITYGQDAKKDKSVRIITDHIRSVAFMVGDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + + ++ + G AYPELI+ I++ + E+E+FG Sbjct: 301 VLRRLLRRAARHGRLLGIKDNFLNEIVEVVFDTCGQAYPELIEKNDYIKKVIGIEEEKFG 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TL++GL +L L + ++G+ AFKLYDT G PLD+ +IL GL +D Sbjct: 361 ETLEQGLEILKSYTEDLVAGGGDTISGEQAFKLYDTFGFPLDLTMEILEDEGLK-VDTEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + ++ Q+ RARA ++ + E ++ F GY L Sbjct: 420 FEKEMQAQKDRARAARGNTEGDAWKEDPLTSLEDASSS-FDGYHNL-------------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +S +KA+V +V+ G + ++ D+T FY GGQ+GD G + D Sbjct: 465 ---------VKASTIKAMVADNALVDTLEEGLEAAIILDETSFYPNGGGQVGDKGQILSD 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D K A G H + G L + +D R + NH+ATHLLH AL Sbjct: 516 TGLFEVEDTVKGANGSIKHIGRIVSGSLTKGEKVETRVDKALRMDAARNHTATHLLHKAL 575 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + P LRFD+TH + +T E+ +E VN+ I + PV +MN Sbjct: 576 KEVLGDHVNQAGSLVEPYRLRFDITHFEAMTKEEISRVEAMVNEFILEAHPVTAELMNIN 635 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA AL G KY + VRVV + G S LCGGTH+ +T ++ + IVSE + Sbjct: 636 EARAMGAMALFGEKYGEEVRVVKM-----GDCSVELCGGTHLDNTSQVGMFKIVSEGGVA 690 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEAITG+ +++ +D + +++ +K + N+V R + +E ++L+ Sbjct: 691 AGVRRIEAITGRAVYQYMLAKDSLINNISDIMKTREDNLVVRANSLVDENKQLEKEVHDL 750 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++++++ I V ++ ++D L+ V D L+ K+ + +++L I+ Sbjct: 751 KSKISMQNAGNALDDSLDIKGVKLLTAKYEDMDIDTLREVADNLRDKLGTSVVVLANIAG 810 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K + + ++D +D+ +A ++ R AK+ GG G GGRP+MAQ+GG + DQA+A Sbjct: 811 D-KINFVATASKDAIDKGAHAGNIVREVAKIAGGKG-GGRPNMAQAGGSDKTMVDQALAS 868 Query: 892 VASFLK 897 ++ Sbjct: 869 AQKVVE 874 >gi|229496595|ref|ZP_04390309.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406] gi|229316492|gb|EEN82411.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406] Length = 873 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 324/916 (35%), Positives = 478/916 (52%), Gaps = 69/916 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR F+ FF + H ++PS+ ++ DPTLMFTN+GM FK+I G + Y + Sbjct: 1 MTANEIRAAFVAFFAEKQHHIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVEAKYPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L + + Sbjct: 61 ADAQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWEFLHERLGIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY T+++ D EA W + L ++I+ DNFW M ETGPCGPCS Sbjct: 121 ADRLYATIFEGAESDGSERDNEAASYWGRF--LPQERILDGNKKDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + +EIWNLVFMQ+ + +LP IDTGMG Sbjct: 179 EIHIDLRSDEERMQQSGRELVNRDHPQVVEIWNLVFMQYNRMADGSLSLLPHKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ +Q K +NYD D+F+ LI A Q++G+ Y V RV+ DH+R+ +F I Sbjct: 239 FERLCMAMQGKRSNYDTDVFQPLIGAVAQLSGIPYGKEESSDVAMRVVADHVRTIAFAIT 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG E M LLP L MG AYPELI + L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGRREAFMYALLPTLIESMGGAYPELIAQREL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 I++ +R E+E F +TL+ G+ LLD + LG L+G AF LYDT G PLD+ + IL Sbjct: 359 IQKVMREEEESFLRTLEAGIKLLDKKIEELGNKGQLSGHDAFVLYDTFGFPLDLTELILR 418 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G+ +D F++ + EQ++RAR+ + W +L E G T F+GYD Sbjct: 419 EHGMT-LDQKGFDREMAEQKARARSA-----AQLETDDWVTLAE--GETLFVGYDQTEAD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + R V + +VV TPFYAE GG Sbjct: 471 CSILRYRHVKQKNK----------------------------DFYQVVLSATPFYAEMGG 502 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD+G + + K+ + VH + + + ID + RR N Sbjct: 503 QVGDSGILVDEEGMRYAIVDTKRENNLPVHL--MPKLPNDPGQTFRAEIDQERRRMAEAN 560 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL +LG HV Q GS ++P+ LRFD +H +T E++ +E+ V + + Sbjct: 561 HTATHLLHQALRMVLGEHVEQKGSFVSPEVLRFDFSHYNKLTPEEIRQVEELVTQAVRAD 620 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 P R + +A A GA AL G KY + VRV+ S LCGGTHV STG I Sbjct: 621 YPREEHRNIPIAEARAMGAMALFGEKYGEEVRVMKYG------TSIELCGGTHVPSTGMI 674 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSESSI AG+RRIEA+T A + L Q++ LK + + L + +VV ++++ Sbjct: 675 GAFRIVSESSIAAGVRRIEAVTATNAEAFLYKQEDTLKEIKALLNNTP-DVVKALQKLLS 733 Query: 766 EYRKLQLIHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVD-SKELKSVMDALQKKIQ 821 E L+ + + ++L I + ++ + + +K + L+ ++Q Sbjct: 734 EESALKSELDTLQRSHAIRLKKELLASSIERSGYRLFVLQGEEKADIIKDIAFQLRGELQ 793 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + + ++ + + ++++E+ + +A +L + +A+++ GG GGG+PH A +GG Sbjct: 794 EPFVFVAATTEGARGLLSVMLSEEAVTLGLHAGNLVKEAARLIQGG-GGGQPHFATAGGK 852 Query: 881 NGNKADQAIAGVASFL 896 + N QA+ + S + Sbjct: 853 DANGLPQALELILSRV 868 >gi|319892672|ref|YP_004149547.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] gi|317162368|gb|ADV05911.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] Length = 876 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 353/914 (38%), Positives = 515/914 (56%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKKLKASDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT + Sbjct: 61 PRIVNAQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSER 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ LW + GL+ D+IIRI NFW + E GP GP +EIF Sbjct: 117 WMAMEPEKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDSAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q+ NY+ DLF +I E ++G KY + +N V +VI DH+R+ +F I+DG Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +E + G+ AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 LA ID+ SFN +E QR RAR S + LKE ++F+GY+ Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV--LKEINTVSKFLGYEAFETH--- 467 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + IV+ GE V A +G+ + + DQTPFYA +GGQ+ Sbjct: 468 --------------------AKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G +Q+T+V K G +H +V+ G +R + TID Q R + NHSA Sbjct: 508 DKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + D LRFD +H P+T+ E+K +E VN+ I ++PV Sbjct: 568 THLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIPV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + MN EDA A GA AL G KY D VRVV+++ S LCGGTHV +T EI L Sbjct: 628 EIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQP-----FSIELCGGTHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768 I SES AG+RRIEA+TGQ A +L ++ +L +K V+ +VE++ + Sbjct: 683 ITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNALKQQVKAKSDAQVIEKVEQLQYNEK 742 Query: 769 KLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ A +L++ I D++ + + ++K +++ MD + K+Q Sbjct: 743 TLKQTIEDKNKALNELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKLQDS 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L K S++ V + L DR A D+ + A V+ GG GGGRP MAQ GG Sbjct: 803 IIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPG 860 Query: 884 KADQAIAGVASFLK 897 K +A+ + +++K Sbjct: 861 KITEALQFIKNYIK 874 >gi|288574979|ref|ZP_06393336.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570720|gb|EFC92277.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 878 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 344/907 (37%), Positives = 517/907 (57%), Gaps = 47/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR F++F+ G + S SL+P DPTL+FT +GMVPFK + G +P + Sbjct: 4 KSGKEIRRLFVDFWVSKGAKHYDSFSLVPE-DPTLLFTIAGMVPFKKYYLGIAEPDVDSA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR ND+DNVGRT RHHTFFEMLGNFS+GGYFK+ +I W+ LT+ LD Sbjct: 63 VTSQKCVRT----NDIDNVGRTARHHTFFEMLGNFSWGGYFKKESITWGWEFLTEVIGLD 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+Y T+Y +DEEAF +W K GL +I+R ++NFW M GPCGP SEI +DQG Sbjct: 119 PDRMYATIYKDDEEAFDVWNKDVGLPDSRILRFGEDENFWFMGPQGPCGPDSEILYDQGP 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G E +RY+EIWN VF Q+++Q LP+ +IDTGMGLER+ +++Q Sbjct: 179 AFSCGPDCKPGCECDRYLEIWNHVFTQYDRQEDGSLLPLPRKNIDTGMGLERLTSLVQGV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +N+++ DLF+ ++ + G+ Y + +VI DH+R+ SF+IADGILP+N+G+G Sbjct: 239 SNDFETDLFRPIMDHVCDMAGIGYGDGLQGDMAAKVISDHIRAVSFMIADGILPSNDGQG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA Y RL+G + + L+P + M Y EL+ +L IE+ + E++RF Sbjct: 299 YVLRRLLRRAARYGRLIGLKKAFLTDLIPNVMDIMADPYRELLDNRLTIEQVVAVEEKRF 358 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 G+TL++G LL +S + IL GDVAF+LYDT+G PL++ ++I +GL+ +D Sbjct: 359 GRTLEQGSDLLHQEISSVFAGDGSILPGDVAFELYDTYGYPLELTREICEEKGLS-VDED 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + +E QR RAR+ S S T ++ L ++G T F+GYD L Sbjct: 418 GFRREMEVQRERARSSSKQANSVMTGDLYAELLSEHGPTPFLGYDSLE------------ 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + + + ++++G++V+ A +G VE + +TPFYAE GGQ+GD G G Sbjct: 466 -----------LEADLTVLMKEGKVVDSASTGDSVEFLLSRTPFYAERGGQVGDQGFVKG 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG +++ D A + VH IV G +++ + +D R ++ NH+ATHLLH + Sbjct: 515 DGFIVEVEDTIHPAGDLIVHRGIVTSGTVKSGCEVRAMVDKDRREAITKNHTATHLLHES 574 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV QNGS ++ LRFD TH +P++S EL +E VN I N + + Sbjct: 575 LIRVLGGHVRQNGSLVSDRFLRFDYTHFEPLSSGELDEVELMVNQEIQNNKTIKVDETDL 634 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A GA AL KY D+VRVVS+ SS LCGG HV +TGEI L I+++ SI Sbjct: 635 ATAKNLGAKALFEEKYGDKVRVVSISE-----FSSELCGGVHVCATGEIGLFKIINDESI 689 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +GIRRI A+TG A + LK L+S L V ++ +++ + EE R+LQ + Sbjct: 690 GSGIRRITAMTGMNAFRNYQNITGTLKELSSNLGVRPARLIEKIKSMDEENRELQKKLQR 749 Query: 777 RKLQLNVEDLSCHKIA-----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 ++ ++DL + V+ I V +L+ V D+++ K + +L+ Sbjct: 750 YTIRSAMDDLRESVVKTDIGQGVSLYVASIEGVTPDQLREVGDSIKDKDTGSVTLLMSSD 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + ++ +V D +++ + + + A L GG GGGRP MAQ+GGP + + Sbjct: 810 GD-RTQMVCMVGGDAVEKGLHGGKIVKEVAA-LFGGKGGGRPTMAQAGGPKIDDMKDILD 867 Query: 891 GVASFLK 897 + +K Sbjct: 868 KAVAIVK 874 >gi|237750646|ref|ZP_04581126.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879] gi|229373736|gb|EEO24127.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879] Length = 897 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 336/920 (36%), Positives = 514/920 (55%), Gaps = 70/920 (7%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR ++EFF+ GH++ S L+P +D +L+FTN+GMV FK+IFTG+ P T+ Sbjct: 17 DIRAKYIEFFKSKGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSS 75 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ D+ Sbjct: 76 QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSL 135 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+T+++ D+EAF+LW + + + +I R+ DNFW M +TGPCGPCSEI+ DQG E Sbjct: 136 LYVTIHESDDEAFELWCE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFF 193 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 EG+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + + NN Sbjct: 194 HSEEDYFGGEGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVIALKEGEINN 253 Query: 244 YDIDLFKHLIQASEQVTGMKY--------------------EGNNIVNHRVIVDHLRSSS 283 +D LF ++Q +++TG Y +I + RVI DH R+ + Sbjct: 254 FDSSLFAPIMQCIKELTGKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADHARAVA 313 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 FL+A G+ EGRGYVLRRI+RRA+ + LLG + + ++ +C MG Y LI+ Sbjct: 314 FLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYSYLIER 373 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIM 401 K ++E R+E+ERF +T++ G+ L L + + NG++AFKLYDT+G PLD+ Sbjct: 374 KNALQEQCRAEEERFFETIESGMALFQTELDSMRQKNEKSFNGEIAFKLYDTYGFPLDLT 433 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 QD+L GL G+D+ F + ++EQ+ R++AH G G + + +L +YG +F+GY+ Sbjct: 434 QDMLRELGL-GVDMQGFEKCMQEQKDRSKAHWKGSGDSVKDGDFNALLSEYGKNEFVGYE 492 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPF 520 + V S + A++ + VE +GQ+ V+ + TPF Sbjct: 493 RM-----------------------SVESKILALLDSNFKRVESLQAGQEGWVMLESTPF 529 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 Y E+GG +GD G D + +K G+ + + +L+ + +D Sbjct: 530 YPESGGPVGDKGILKNDSHIVTQVLDTQKYFGLNLSKVVATS-MLKVGDLVKAQVDSSR- 587 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ +HSATHLLH+AL ILGSH++Q GS + + LRFD +H K ++ EL+ IE VN Sbjct: 588 FEIIKHHSATHLLHYALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVDELEQIESLVN 647 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + IA++ P + M E A A GA AL G KY + VRV+++ S LCGG H+ Sbjct: 648 EEIAESSPQICETMGIEQAKAKGAMALFGEKYGESVRVITLGD------SVELCGGIHIH 701 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T EI YIV ESS+ +G+RRIEA+ G+ A ++ E +KSL LK +V+ V Sbjct: 702 NTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYNYGKAALESIKSLKEQLKAQ--DVLQGV 759 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 ++ + + + K + +V+ L ++ V + + V++KE K ++D + + Sbjct: 760 AKLQNALK--EARESANKAKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKDIIDRAKNEN 817 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + + +L+ K S+ V + A + A++L GG GGGR A +GG Sbjct: 818 EK-VAILLVTESGGKVSLTAGVKG--VSSLKAGAWVKQVAQIL-GGNGGGRDDFATAGGK 873 Query: 881 --NGNKADQAIAGVASFLKK 898 +K +A+ S ++ Sbjct: 874 VTESSKVQEALDLAKSIARE 893 >gi|150390222|ref|YP_001320271.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] gi|149950084|gb|ABR48612.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] Length = 893 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 337/908 (37%), Positives = 528/908 (58%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR FL+F+++ H + S L+P ND +L+ N+GM P KN F+G E P + + Sbjct: 17 MGLNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRM 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R G D++NVG+T+RH TFFEMLG+F+FG YFK +IQ W+ TK ++ Sbjct: 77 ATCQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMP 132 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +++ +VY+ED+EA+ +W+ + ++I+R+ DNFW + GPCGPCSE++FD+G+ Sbjct: 133 EDKIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGD 191 Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + +R++E WN VF QF++ +LP +IDTGMGLER+A ++Q+ Sbjct: 192 KYSCGHDDCKPGCDCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVACIMQD 251 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +++D KH++ + T +Y + ++ R+I DHLRS +F+I DGILP+NEGR Sbjct: 252 VDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPSNEGR 311 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG ++ + L+ + G AY EL++ K I++ ++ E++R Sbjct: 312 GYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQVEEDR 371 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+ +GL +L+ + + + +LNG AFKLYDT+G PLD+ ++IL R + +D Sbjct: 372 FQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT-VDE 430 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR+RAR G + ++ F +K T F GY+ LR Sbjct: 431 SEFESEMEKQRNRARKARSGGDTEGWKEDAFDALDKNIQTSFKGYETLR----------- 479 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V AI+++ + V +G++V +V D+TPFY E+GGQ+GD G Sbjct: 480 ------------AEGKVLAIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGDIGHIF 527 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D Q+ D ++ + + RGIL+ S+ +D + R NH+ATHLLH Sbjct: 528 KDEFEGQVLDTKQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTATHLLHK 587 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL I+G HV Q GS +TP+ LRFD +H + ++SA+L +E VN I L V T + Sbjct: 588 ALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNVDTVEAS 647 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL G KY D VRVV G +S LCGGTHV ++ EI I+SE+ Sbjct: 648 LEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFLILSETG 702 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TGQ A H+ + ++ + S LK + RVEE+ +E ++ Sbjct: 703 VAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKEKDKELQ 762 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L + + I N + H E ++L+++ D+L++KI SG+I L Sbjct: 763 QLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGVIALGAE 822 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + KAS + T+D++++ ++ ++ R AK+ GGGG GGRP MAQ+GG N K A+ Sbjct: 823 SND-KASFFVTATKDVVEKGVHSGNMIREVAKIAGGGG-GGRPDMAQAGGKNPEKIQSAL 880 Query: 890 AGVASFLK 897 + V LK Sbjct: 881 SIVKGLLK 888 >gi|283955931|ref|ZP_06373421.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336] gi|283792591|gb|EFC31370.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336] Length = 842 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 348/896 (38%), Positives = 506/896 (56%), Gaps = 60/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEVTPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + A++ E E + V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALL-DEEFKEVSTLKDAGWVMLENTPFYATSGGQSAD-------SGFIAK 504 Query: 544 TDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 +V + ++ + ++ G + + ID + R Q++ +HSATHLLHHAL ILG Sbjct: 505 REVLDTQKFFNLNLSFIKAGEELKVGDIVHAKIDTEKREQIARHHSATHLLHHALREILG 564 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A S Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RR Sbjct: 625 GAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A + Q E+L LK + +I +KL+ K +L Sbjct: 679 IEAVVSKAALEFVKNQLEELSKAKDELKNN---------DILSGLKKLKNEILSLKNELK 729 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + ++ + + VD+ ++K+++D + K +I+L+ + K++K ++ V Sbjct: 730 NSSKTELDSKNIQGVEICVKRVDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV 788 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +D+ A L + +A++L GG GGGR A +GG + NK D+A+ ++K Sbjct: 789 -KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLNKIDEALKQSLETIEK 840 >gi|319901112|ref|YP_004160840.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108] gi|319416143|gb|ADV43254.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108] Length = 872 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 333/919 (36%), Positives = 486/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHVDSRTEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQYNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIADMAGTTYGKNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG +YPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYRLLPVLIENMGGSYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEVSGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ D+ FN +E+Q+SRAR + W +LKE G T+F+GYD Sbjct: 419 ILRENGMTA-DLNEFNAEMEQQKSRARNA-----AAIETGDWITLKE--GTTEFVGYDFT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D+TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + + + D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIDVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ IE N I Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEELRQIEHIANAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R M EDA GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRDMPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R + + L+ L + + ++ G + + Sbjct: 674 GNIGMVKIVSESSVAAGVRRIEAYTGARVEEMMDTIQDTLRDLKALFNNAP-DLAGTIHK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K + L S ++ V + + ++ +K++ L+ Sbjct: 733 YIEENAGLKKQVEDFMKEKESQLKDKLMNSIQEVNGVKVIKFCAP-LPAETVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G E K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GQITEDLFFVAGTEYEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNVDGLNAAVDKVIEL 869 >gi|312887198|ref|ZP_07746802.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603] gi|311300510|gb|EFQ77575.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603] Length = 927 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 325/971 (33%), Positives = 500/971 (51%), Gaps = 122/971 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF GH ++PS+ ++ NDPTLMFTN+GM FK+IF G+E + V Sbjct: 1 MTAQEIRQAFLDFFASKGHTIVPSAPIVVKNDPTLMFTNAGMNQFKSIFLGEEPVKFPRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 Q+C+R GKHNDL+ VG + HHT FEMLGN+SFG YFK+ AI +W+LLT+ + LD Sbjct: 61 ADTQRCLRVSGKHNDLEEVGIDSYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEIYKLD 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T ++ DE E +LW++ ++ D I+ DNFW M ETGPCGPCS Sbjct: 121 KSRLYVTYFEGDEKEGLAADTETLELWREF--VADDHILPGNKKDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI +D G + + +EIWN VFMQF + LP +DTGMG Sbjct: 179 EIHYDGRTDAERAQIDGATLVNGVDDSVMEIWNDVFMQFNRLKDGSLQPLPAKHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------------------- 267 ER+ ++Q KT+NYD D+F+ LIQ + +G+ Y + Sbjct: 239 FERLVRIMQGKTSNYDTDVFQPLIQFIAEKSGIVYGPHPALSKGEGSDLQASEAHALKVL 298 Query: 268 ----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LG 316 V RV+ DH+R+ SF IADG LP+N GYV+RRI+RRA+ Y+ L Sbjct: 299 SFGEDLVEAKTDVAMRVMADHIRAISFAIADGQLPSNNKAGYVIRRILRRAVRYSYQYLN 358 Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376 + EP + L+P L + + EL+ K +++ + E+ F +TLDRG+ + + Sbjct: 359 FKEPFLNQLVPILAQQFVGVFTELVNQKDFVQKVVLEEEVAFLRTLDRGINKFEEFIQKE 418 Query: 377 GKD------------------------EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++ I+ G+ AF+L DT+G PLD+ + + G Sbjct: 419 AQEIELIKNLANDSSSSLPTAFKDSKTTIIRGNFAFELSDTYGFPLDLTELMAREIGWT- 477 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ + AL +Q+SR+RA + + L ++ +F+GY + + Sbjct: 478 VDVEGYETALAQQKSRSRAA------TAIDTGDWILLKEDDTVEFVGYTETETIAHVVKY 531 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 RKV +A ++ ++V D+TPFYAE+GGQ+GDTG Sbjct: 532 RKV----------------------------KAKGKEQYQIVLDKTPFYAESGGQVGDTG 563 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 I + KK G+ VH ++ + +L +D R+ + NHSATHL Sbjct: 564 ELIFPDGEIVPVTDTKKENGLIVHFV--DQLPEDIDDALTAMVDVDKRKATNNNHSATHL 621 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LGSHV+Q GS + + LRFD +H +T E+ IE VN+ I +N+ V + Sbjct: 622 LHAALKEVLGSHVNQKGSLVNNEYLRFDFSHFSKVTDEEIARIEAIVNERIRENILVDIQ 681 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + +E+AIA GA AL G KY D VRVV+++ + S LCGGTHV STG+I I++ Sbjct: 682 ELPKEEAIAMGANALFGEKYGDTVRVVTMDMK----FSIELCGGTHVQSTGQIGFFKIIA 737 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ AG+RRIEAITG + Q + ++ L LK + NV VE + +E +L+ Sbjct: 738 ESAVAAGVRRIEAITGVAVEQYFNEQGKLIQQLKELLK-NPKNVAKSVEGLLDENSRLKK 796 Query: 773 IHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K + I +NF++ + ++ +K++ +L+ + + ++L Sbjct: 797 ELEKSVYEKAAGLKQVLAAKAEAINGINFIAQQVDLPNADAIKNLAYSLKDIVPNLFLVL 856 Query: 828 VGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + K ++ +++ E L+ NA ++ R AK + GG GGG+P A +GG + + Sbjct: 857 -TAQIDGKPNITVMIEESLVKEKGLNAGNIIRELAKEVQGG-GGGQPFYATAGGKDVSGL 914 Query: 886 DQAIAGVASFL 896 + + SF+ Sbjct: 915 PRVLDKARSFI 925 >gi|268317116|ref|YP_003290835.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252] gi|262334650|gb|ACY48447.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252] Length = 953 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 340/982 (34%), Positives = 508/982 (51%), Gaps = 121/982 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FL+FF++ GHE++PS+ L+P NDPTL+FTN+GM FK++F G Y+ Sbjct: 5 KSSEQIRQSFLDFFREKGHEIVPSAPLVPQNDPTLLFTNAGMNQFKDVFLGIGTRPYKRA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFK AI+ AW+LL + + LD Sbjct: 65 ANTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKREAIRWAWELLVERWGLD 124 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY TV++ DE EA +LWK + + I T DNFW M +TGPCGPCS Sbjct: 125 PDRLYATVHEGDEALGLEPDVEAAELWKSETSIDPSHIKFCPTKDNFWMMGDTGPCGPCS 184 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G+ + R IEIWNLVF+Q+ L +DTGMG Sbjct: 185 EIHIDLRPDEERRRVPGIELVNAGDPRVIEIWNLVFIQYNALPDGRLEPLKAKHVDTGMG 244 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--------------NHRVI 275 LER+ VLQ KT+NYD DLF ++Q + +++ RV+ Sbjct: 245 LERIVAVLQGKTSNYDTDLFAPILQRAAELSPRDEVRGYDDIRVADERERERIRVALRVV 304 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMG 334 DH+R+ +F IADG++P N GRGYV+RRI+RRA+ Y LG+ EP + L+ L +MG Sbjct: 305 ADHIRAIAFAIADGVVPGNTGRGYVIRRILRRAVRYGYQTLGFREPFLYRLVEPLAHKMG 364 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------- 377 +PE+ + + +E +++E+E F TL GL + +L +L Sbjct: 365 RVFPEIERHRAYVERVIKAEEESFLATLGTGLAFFERLLPYLKAAAEGRPIEAIRADLLR 424 Query: 378 -----------------------------KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ + G+VAF L+DT+G P+D+ Q + Sbjct: 425 DGQALDLLQKAYVDTSDREAIVEAFLKSAAEKNVPGEVAFLLHDTYGFPIDLTQLMAREE 484 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS---GTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL G+D+ + + +E QR RARA S + E+ + + + F+GYD R Sbjct: 485 GL-GVDMARYEELMERQRERARAASTFGAAVLTADEEEAGWKRVSEGEDSVFVGYDTTRV 543 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + G + E+V DQTPFYAE+G Sbjct: 544 EDARIRAVRTI---------------------------QTPEGPRHELVLDQTPFYAESG 576 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GDTG +++ D QK I V+R + + +D R+++ Sbjct: 577 GQVGDTGVLRVGDEEIRVLDTQKLGGHIVH---YVDRLPKELDAPVEAIVDAARRKRIEK 633 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHLLH AL ILG+HV Q GS + PD LRFD +H + +T L+ IE VN++I + Sbjct: 634 HHTATHLLHAALREILGTHVQQKGSLVAPDRLRFDFSHFERVTPELLRQIEARVNEVIQR 693 Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N+P R + E+AIA GA AL G KY DRVRV++ + S LCGGTHV++TGE Sbjct: 694 NVPRIEERDVPYEEAIARGAMALFGEKYGDRVRVITFDPN----FSMELCGGTHVAATGE 749 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + + I+SE S+ +GIRR+EA+ GQ A + Q +L+ + K Q + + + Sbjct: 750 LGVFRIISEGSVASGIRRVEALAGQDALDWINRQLTELEQARTQFKSLQRPLDEEIAVLL 809 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R+L+ A + + L+ H++ + ++ + + EL+ + AL+ + Sbjct: 810 EEQRRLEKELAALRREQQKARLAKLIEQAHRVNGLRVVTGQLEALSMDELRELAQALRDQ 869 Query: 820 IQ-SGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + G+ +L EK K + VT+D++ R A L A+++GGGG GGRP +A Sbjct: 870 LGREGVAVLGTTDPEKQKVYLAAAVTDDVVARGLEAGRLVGQVARIVGGGG-GGRPTLAT 928 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 +GG K +A+ V +++ Sbjct: 929 AGGRQPEKLHEALEAVPRLVQQ 950 >gi|315924764|ref|ZP_07920981.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621663|gb|EFV01627.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 882 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 339/910 (37%), Positives = 504/910 (55%), Gaps = 53/910 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH L S SL+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 6 LNEIRERYLAFFESKGHLRLKSFSLVPHNDKSLLLINSGMAPMKAYFTGDEVPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D+DNVG+T RH TFFEM+GNFSFG YFK I AW+ +T + +D Sbjct: 66 CQKCIRT----PDIDNVGKTARHGTFFEMMGNFSFGDYFKPEVIPWAWEFITDKMGMDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 ++Y+T+Y +D+ A LW+ G++ D I+R+ DNFW TGPCGPCSEIF+D+GE Sbjct: 122 KIYVTIYLDDDTAHDLWRS-VGVAEDHIVRLGKEDNFWEHG-TGPCGPCSEIFYDRGEAY 179 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R++E WNLVF QF++ L +IDTGMGLERMAT+LQ Sbjct: 180 GCGKPTCGPGCDCDRFVEFWNLVFTQFDRDENDRYTPLDHPNIDTGMGLERMATILQGVD 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D +H++ + G Y + V+ RVI DH+RS +F+I DGI+P+NEGRGY Sbjct: 240 NIFEVDTIRHVLDYICSLCGEHYGDDAEKDVSIRVITDHIRSVTFMIGDGIMPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA + RLLG + + + G AYPEL + + I++ ++ E+ERF Sbjct: 300 VLRRILRRAARHGRLLGIKGTFLHDVAKEVVAVSGDAYPELKEKQKTIQKIIQIEEERFD 359 Query: 360 KTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 T+D+GL L+ +L L + I +G AFKLYDT G P D+ ++I+ RG I Sbjct: 360 ATIDQGLSQLNAMLEKLEAEAPGERIFSGAEAFKLYDTFGFPFDLTREIVEERGF-AIPY 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A++ QR RARA + F+ F+GYD L+ Sbjct: 419 EDFEKAMDAQRERARAARAESDTAVWADDPFNPLGADAVDAFVGYDALKAD--------- 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + ++ +V+EA +G V V+ DQT FYA++GGQ+GD+G Sbjct: 470 --------------GKILGLIVNDTLVDEAKAGDNVLVLLDQTVFYAQSGGQVGDSGVIE 515 Query: 536 GDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R+ ++D + + +H+ VE G +T +++ ++ +R + NH+ATH+L Sbjct: 516 SADGTARIAVSDCRYGSLKRHIHYGKVESGSFKTGQTVISEVNKADRMATARNHTATHML 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS ++PD LRFD H +P+T+ E+ +E VN +I + +PV Sbjct: 576 QKALKQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTAEEIARVETIVNQVILEAMPVTIFE 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + ++A GA AL G KY + VRVV V G +S LCGGTH+++ + + I+SE Sbjct: 636 TDIDEAKKLGAMALFGEKYGNIVRVVRV-----GDYSIELCGGTHLTNAAQAGMFKILSE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AGIRRIEA TG + + L+ ++ +K + +V ++ E+ E+ + Sbjct: 691 SGVAAGIRRIEAATGMNTYHEMARAEATLRKVSGMVKANPAQLVEKIAELEEQGKAQDRE 750 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K Q + +IA V + ++ EL+ + D L+ K+ SG I ++ Sbjct: 751 IAALKQQQAGSAAGEIAQNIVEIAGVKAAIAGVDGMEMDELRELSDRLKDKMGSG-IAVI 809 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G K + + T+DL+ R F+A +L R A+V GGGG GGRP MAQ+GG K Sbjct: 810 GTVNGGKINFIATATKDLVKRGFHAGNLIREVAQVAGGGG-GGRPDMAQAGGKRPEKMAD 868 Query: 888 AIAGVASFLK 897 A+ +K Sbjct: 869 ALEKAKDLIK 878 >gi|307326782|ref|ZP_07605974.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113] gi|306887545|gb|EFN18539.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113] Length = 890 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 324/923 (35%), Positives = 500/923 (54%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 VSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSSQEEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ITVY++D+EA ++W+++ G+ A++I R+ N+WSM GPCGPCSEI Sbjct: 116 GYGLDPERLWITVYEQDDEAERIWREVIGVPAERIQRLGMGPNYWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + P +IDTG+GL Sbjct: 176 YDRGPEF-GEEGGPAVNDERYVEIWNLVFMQYERGAGEGKENFPILGELPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG+ Y + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVRNMYETDTLRVVMDKATELTGVAYGAAHESDVSLRVVADHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ R+LG TEP++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRILGATEPVVGELVDVVLKTMGQQYPELLTDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G +LD + + +L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + G T+F GY G Sbjct: 415 EQGLS-VDEAGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADSSGLTEFTGYSHTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTIVGLLVDGVSSPAAGEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL DTG + G +++ DVQ+ G+ VH +V+ G + + ID RR ++ Sbjct: 511 GQLADTGRITLDTGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGAGVHARIDITRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGGVLMDVEQKINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ ++A GA A G KY DRVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVSAEVMSMDEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RR+EA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVKGRPEELPEKISGML 745 Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + ++ + + + + + ++ + + +L+ ++ ++ Sbjct: 746 GKLKEAEKEIERFRAEKVLQAAAGLAQGAKDVRGTALVAAKVPDGTSADDLRKLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I ++ L ++ + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIPGDRPAVVALFTVAGGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N + +AI V + + Sbjct: 865 QGGGQNPDAVGEAIEAVERLVTE 887 >gi|57505123|ref|ZP_00371068.1| alanyl-tRNA synthetase [Campylobacter coli RM2228] gi|305433060|ref|ZP_07402216.1| alanine--tRNA ligase [Campylobacter coli JV20] gi|57019098|gb|EAL55813.1| alanyl-tRNA synthetase [Campylobacter coli RM2228] gi|304443761|gb|EFM36418.1| alanine--tRNA ligase [Campylobacter coli JV20] Length = 842 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 349/896 (38%), Positives = 504/896 (56%), Gaps = 60/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 +R+ +L FF+ GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+ T+ Sbjct: 2 DVRSEYLNFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 LY+TV++ D+EAF+LW+K + ++I R DNFW M +TGPCGPCSEIF+DQGE Sbjct: 121 LYVTVHESDDEAFELWQK--HIQKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEYF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K +N Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERSADGKLTPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ G Y + + RVI DH+RSS FL+A G EGRGYVLRR Sbjct: 239 FDSSLFMPIIDEIAKLCGKTYIYESGASFRVIADHIRSSVFLLAQGTSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG +P M +L+ +C MG Y L + K I+E + E+ERF T++ Sbjct: 299 ILRRALRHGYLLGLKKPFMYNLVDVVCKLMGEHYTYLNEKKDFIKEQICLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + E+ +G+VAFKLYDT+G PLD+ QD+L + L +D F + + Sbjct: 359 NGIEIFNKELKNT--KEVFSGEVAFKLYDTYGFPLDLTQDMLREKNL-VVDEAKFEELMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G + +L EK+G F+GY+ Sbjct: 416 EQKNRAKASWKGSGDKVASGDFKNLLEKFGENCFVGYEKTE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + V A++ + + V V+ D TPFYA +GGQ+ DTG IG L Sbjct: 457 ----CQATVLALLDEDFKEVSSLKG--LGWVMLDNTPFYATSGGQIADTG-YIGTSEVLD 509 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + ++ ++ ID R Q + +HSATHLLHHAL ILG Sbjct: 510 TQKFFNLNLSLV-----KANEEIKLNDKIIAKIDTDKREQTARHHSATHLLHHALREILG 564 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SH+SQ GS + + LRFD TH K ++ EL+SIE VN++I + + M EDA S Sbjct: 565 SHISQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIISSSEAILENMPLEDAKKS 624 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RR Sbjct: 625 GAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A + +L LK + ++ +KL+ K K +L Sbjct: 679 IEAVVSRAALEFCKTFMNENLNLKEELKSNDLSLG---------VKKLKNEILKLKNELK 729 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + S +++N + + V+S ++K+++D + K + I+L+ K+ K ++ V Sbjct: 730 NSNKSQLNSSNINGVQICVECVESGDIKTMIDEFKNKFEKAAILLIQT-KDDKITLAAGV 788 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A +L + A++L GG GGGR A +GG + +K D+A+ ++K Sbjct: 789 KN---CPLKAGNLVKNIAQIL-GGNGGGRDDFATAGGKDISKIDEALKQALDLIQK 840 >gi|210622569|ref|ZP_03293251.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275] gi|210154152|gb|EEA85158.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275] Length = 911 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 337/908 (37%), Positives = 532/908 (58%), Gaps = 49/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR+ FLEFF+ H + S L+P ND +L+ N+GM P KN F+G E P + Sbjct: 37 MGLNEIRSKFLEFFKTKDHYVGASYPLVPNNDKSLLLINAGMAPLKNYFSGVEVPPKNRM 96 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R G D++NVG T RH TFFEMLGNFSFG YFK ++ W+ TK ++ Sbjct: 97 ATCQKCIRTG----DIENVGVTARHATFFEMLGNFSFGDYFKRESLAWGWEFATKWLNIP 152 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + ++++TVY++D+EAF +W K G ++I+R+ +DNFW + GPCGPCSEI+FD+GE Sbjct: 153 EEKIWVTVYEKDDEAFDIWSKEMGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDRGE 211 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P + +R++E WN VF QF ++ L +IDTGMGLER+A ++Q Sbjct: 212 EYGCDSPDCKPGCDCDRFLEFWNHVFTQFSKEEDGSYSELENKNIDTGMGLERIACIMQG 271 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D +++A +V G++Y + N + R+I DH+R+ SFLIADG+LP+NEGR Sbjct: 272 VDNIFEVDTIHSVLEAVSKVAGVEYGKDKANDKSIRIITDHIRAVSFLIADGVLPSNEGR 331 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GY+LRR++RRA + +LLG + L+ + G AYPEL++ + I++ ++ E+E+ Sbjct: 332 GYILRRLLRRAARHGKLLGIKGTFLNGLVDEVIKVSGDAYPELVEKEDYIKKVIKIEEEK 391 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D+G+ +L+ L K+ +L+G++AFKLYDT+G PLD+ +IL GL+ ++ Sbjct: 392 FNETIDQGMEMLNSYKEELKKEGKTVLSGEIAFKLYDTYGFPLDLTVEILREEGLS-VNE 450 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ +E+Q+ RAR + + ++ + KE+ ++F+GY L G Sbjct: 451 EEFSEEMEKQKERARTARGNMDGESWKEDPLA-KEENVESEFVGYVELTG---------- 499 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V AIV+ EIVE A G+ V VV D+T FY E GGQ GD G Sbjct: 500 -------------EGKVLAIVEDSEIVESASEGKDVVVVLDKTNFYPEGGGQAGDCGVLK 546 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + + + +K G H V G L+ L +D +NR S NH+ATHLLH Sbjct: 547 NDNCAVAVKNTKKGPAGSIKHFGTVVAGELKAGDVLTCEVDRENRMACSRNHTATHLLHK 606 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H +Q GS +T D LRFD TH + +T ELK+IE+ VN+ I VV M+ Sbjct: 607 ALKEVLGDHANQAGSLVTADRLRFDFTHFEAVTKEELKTIEEKVNNAIFNAYDVVAETMD 666 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A A GAAAL G KY + VRVVS+ G +S LCGG H+S+T + + I+SE Sbjct: 667 INAAKAKGAAALFGEKYGNEVRVVSM-----GDYSMELCGGAHISNTAQAGMFKIISEGG 721 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TG+ ++ +DE + + + +K + ++ RVE + EE + L+ Sbjct: 722 VAAGVRRIEAVTGKAVYEYMNKKDELIAKVCATIKAKEDGLLHRVENVLEENKNLEKELH 781 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K Q++++ S ++ V+ +++ +D L+ D L+ K++SG+++L + Sbjct: 782 NLKTQISMQSADSALDSKVEVKGVSLVTNKYENMDMNTLRDTADNLRDKMESGVVVLANV 841 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + ++ T+D++++ ++ ++ R AK+ GG G GGRP+MAQ+G K D+A+ Sbjct: 842 A-DGKVNFVVTATKDVIEKGVHSGNIVREVAKIAGGKG-GGRPNMAQAGATEPAKVDEAL 899 Query: 890 AGVASFLK 897 ++ Sbjct: 900 NYAKEVIE 907 >gi|86153544|ref|ZP_01071748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843270|gb|EAQ60481.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 842 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 505/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + V+ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ V+++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V + A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|86148968|ref|ZP_01067200.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597061|ref|ZP_01100297.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562159|ref|YP_002343938.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20532267|sp|Q9PI05|SYA_CAMJE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|85840326|gb|EAQ57583.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190750|gb|EAQ94723.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359865|emb|CAL34653.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927005|gb|EFV06360.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 842 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + ++ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ ++++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V +D+ A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|33864421|ref|NP_895981.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313] gi|41018180|sp|Q7V419|SYA_PROMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33641201|emb|CAE22331.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str. MIT 9313] Length = 892 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 334/913 (36%), Positives = 509/913 (55%), Gaps = 56/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IRT FL FF + H+++PS+SL+P DPT++ T +GM+PFK +F GQ + T Sbjct: 16 TGSEIRTAFLTFFAERAHQVIPSASLVPE-DPTVLLTIAGMLPFKPVFMGQAERPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELTTEVFGLDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA +W+ + G++ +I+R+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KNLVVSVFREDDEAETIWRDVVGVNPKRIMRMDEADNFWASGPTGPCGPCSEIYYDFKPD 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R++E +NLVFMQ+ + + L +IDTGMGLERMA +LQ N Sbjct: 191 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ D+ LI+ + + G+ Y+ + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDIIYPLIETAAGLAGLDYQKLDEKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 ++RR++RR + + RL+G +P + + A M AYP+L + + LI L E+ RF Sbjct: 310 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG +L VL + ++++G AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 370 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+++QR RA+A ++ + T + + + AT+F GY++L Sbjct: 427 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFQGYEVLEQPCC----------- 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 V A+V GE E A +G V++V D TPFY E+GGQ+GD G G+ Sbjct: 475 ------------VLALVVNGESAERASAGDSVQIVLDTTPFYGESGGQVGDHGVLSGEGS 522 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + D + +FVH +ERG L + +D RR+ NH+ATHLL Sbjct: 523 GGNGVIVTVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ S + Q GS + D LRFD ++ +T+ EL+ IE +N I ++ ++ M+ Sbjct: 583 ALKQVVDSGIGQAGSLVDFDRLRFDFHCARAVTAKELEQIEALINGWIMESHDLIVEEMS 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A+GA A+ G KY D V D S LCGGTHV++T EI L IV+ESS Sbjct: 643 IQEAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESS 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G ++L +DE +K L LKV +V RV + EE + Q Sbjct: 698 VAAGIRRIEAVAGPAVLAYLNERDEVVKKLLERLKVQPSEIVERVTSLQEELKSSQKALT 757 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L V + + + + + V+ L++ L ++ G +++G Sbjct: 758 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDGAAVVLGG 817 Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 S E K ++ + L+ A AK GGGG GGRP++AQ+GG +G Sbjct: 818 LPDPSDEGKVILVAAFGKQLIAQGQQAGKFIGSIAKRCGGGG-GGRPNLAQAGGRDGAAL 876 Query: 886 DQAIAGVASFLKK 898 D A+ L++ Sbjct: 877 DGALEAAKVDLQQ 889 >gi|57238291|ref|YP_178628.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221] gi|148925880|ref|ZP_01809567.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486] gi|73621968|sp|Q5HVQ7|SYA_CAMJR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57167095|gb|AAW35874.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221] gi|145844866|gb|EDK21970.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486] gi|315057927|gb|ADT72256.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3] Length = 842 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + ++ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ ++++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V +D+ A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|198276957|ref|ZP_03209488.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135] gi|198270482|gb|EDY94752.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135] Length = 872 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 325/919 (35%), Positives = 485/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI A++ L L Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSILKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W + D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAASYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ ++G KY + V RV+ DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKTDVAMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M L+P L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LL+ ++ ++G AF LYDT G P D+ + Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNETKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL GL D+ F +++Q+ RAR + W +LKE G T F+GYD Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V +TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSETPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + + I D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIDIIDTKKENNLPIHI---AKKLPEHLEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +++ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQIREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHVS+T Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SESS+ AG+RRIEA+TG + + + L + + ++ + + Sbjct: 674 GKIGMVKIISESSVAAGVRRIEAVTGAKVEEMFDTVQDTINDLKALFNNAP-DLKAAISK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K L +I V + ++ + + +K++ L+ Sbjct: 733 YIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIKAVLP-MPADAVKNIAFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + +++G E K + + ++ED + NA L R +AK++ GG GGG+PH A Sbjct: 792 GQFTENLFVVIGSVFENKPLLTVTMSEDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNTAVDKVVEL 869 >gi|284925772|gb|ADC28124.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902] Length = 842 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DVGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + ++ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ ++++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V +D+ A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|323464290|gb|ADX76443.1| alanyl-tRNA synthetase [Staphylococcus pseudintermedius ED99] Length = 876 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 353/914 (38%), Positives = 514/914 (56%), Gaps = 57/914 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P Sbjct: 1 MKKLKASDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT + Sbjct: 61 PRIVNAQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSER 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ LW + GL+ D+IIRI NFW + E GP GP +EIF Sbjct: 117 WMAMEPEKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 174 YDRGEAYGQDDSAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q+ NY+ DLF +I E ++G KY + +N V +VI DH+R+ +F I+DG Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +E + G+ AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 LA ID+ SFN +E QR RAR S + LKE ++F+GY+ Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV--LKEINTVSKFLGYEAFETH--- 467 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + IV+ GE V A +G+ + + DQTPFYA +GGQ+ Sbjct: 468 --------------------AKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G +Q+T+V K G +H +V+ G +R + TID Q R + NHSA Sbjct: 508 DKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + D LRFD +H P+T+ E+K +E VN+ I ++PV Sbjct: 568 THLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIPV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + MN EDA A GA AL G KY D VRVV+++ S LCGGTHV +T EI L Sbjct: 628 EIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQP-----FSIELCGGTHVRNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768 I SES AG+RRIEA+TGQ A +L ++ L +K V+ +VE++ + Sbjct: 683 ITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNVLKQQVKAKSDAQVIEKVEQLQYNEK 742 Query: 769 KLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ A +L++ I D++ + + ++K +++ MD + K+Q Sbjct: 743 TLKQTIEDKNKALNELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKLQDS 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L K S++ V + L DR A D+ + A V+ GG GGGRP MAQ GG Sbjct: 803 IIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPG 860 Query: 884 KADQAIAGVASFLK 897 K +A+ + +++K Sbjct: 861 KITEALQFIKNYIK 874 >gi|320011910|gb|ADW06760.1| alanyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331] Length = 889 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 336/923 (36%), Positives = 501/923 (54%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP V Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW LT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIEFAWAALTNSVEEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL+ITVY +D+EA ++W++ G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GFGLDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSQNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG++Y + + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADQGSDVSLRVVADHVRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVRDLVDVVVDTMGQQYPELITDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +LD + + ++L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + ++ G T+F GY + G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADRSGVTEFTGYASIEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESKIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G +Q+ DVQ+ G+ VH V+ G + S ID RR ++ Sbjct: 511 GQLADQGRIKLDSGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDNTRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ +DA GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L LK + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLKGRPEELPEKISGML 745 Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + + K + + L DV ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGVALVTGQVPDGTTADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ G ++ L + + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N + A+A V + + Sbjct: 865 QGGGQNPDAIGDAVAAVERLVTE 887 >gi|328881150|emb|CCA54389.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712] Length = 889 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 333/922 (36%), Positives = 502/922 (54%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 ++VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT Sbjct: 60 SSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTPVEHG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY ED+EA ++W+ + G+ A++I R+ DN+WSM GPCGPCSEI Sbjct: 116 GYGLEPEKLWITVYQEDDEAEQIWRDVVGVPAERIQRLGKKDNYWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGSGKDDFPILGELPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + +I + +TG+ Y + + RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLQVVIDKATALTGVAYGKAHDSDVSLRVVADHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG + P++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAVRNMRLLGASGPVVGELVDTVINTMGEQYPELITDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +LD + + +L+GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + GAT+F GY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHADMTSYREIADSNGATEFTGYTNTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTVVGLLVNGVSSPAASEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + G +++ DVQ+ G+ VH V+ G + + TID + RR ++ Sbjct: 511 GQIADQGRIKLHSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGATAYATIDVRRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + A L +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPNAVPGAVLTDVEQKINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M ++A GA A G KY ++VRVV++ G S LCGGTHV +T + Sbjct: 631 RELEVHAEVMPIDEAKRQGAIAEFGEKYGEKVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISAML 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + K + + ++ S I V ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLVDSAQDIRGVALVTGQVPDGTGADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 +I G ++ L + K +I E +R A +L R +AK LGGGG GG+P + Sbjct: 806 RISGGRPAVVALFTTAN-GKPLTVIATNEAARERGLKAGELVRTAAKTLGGGG-GGKPDV 863 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ GG N +AIA V + Sbjct: 864 AQGGGQNPEAVGEAIAAVERLV 885 >gi|123965286|ref|YP_001010367.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515] gi|205830181|sp|A2BTZ9|SYA_PROM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123199652|gb|ABM71260.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515] Length = 886 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 319/906 (35%), Positives = 499/906 (55%), Gaps = 52/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F++ H ++PSSSLIP +DPT+M T +GM+PFK +F G + Sbjct: 11 TGDEIRKAFLDFYESKSHLIIPSSSLIP-DDPTVMLTIAGMLPFKPVFLGLRNRPSPRAS 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L+T + L Sbjct: 70 SSQKCLRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQWAWELITDIYHLKP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + I+V+ ED E+ K+W+ G+ ++IIR+ DNFWS TGPCGPCSE+++D Sbjct: 126 ENIIISVFHEDHESEKIWRDNIGIIPERIIRLDEKDNFWSSGATGPCGPCSELYYDFNPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+KTN Sbjct: 186 -KGLKNIDLEDGDRFIEFYNLVFMQYNRDSNGMLSDLKFKNIDTGMGLERMAQILQKKTN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +++ + + + Y ++ + +++ DH R+ LI+DG++ +N GRGY Sbjct: 245 NYETDLILPIVKEAALIANIDYFSSDDRTKISLKILGDHTRAIIHLISDGVVASNLGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLL + + L + M + YP+L K I + E++RF Sbjct: 305 ILRRLLRRMIRHGRLLAIKDDFLSRLASIGISLMQNTYPDLKNNKERILREINIEEKRFL 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRG LL+ ++ +++++G AF+LYDT+G PL++ ++IL + +D+ F Sbjct: 365 ETLDRGEKLLNDLIRS--GEKLISGTKAFELYDTYGFPLELTKEILEEKN-INVDLEGFT 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +E Q+ RA+A S + I + + + T F GYD L Sbjct: 422 REMEAQKERAKAASQKIDLTLKGSIEREI-DLFDQTIFEGYDSLNS-------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 IVK I + VE+A+ GQ V+++ DQT FY E+GGQ+GDTG + Sbjct: 467 ---------QGIVKGIFFESNSVEKAIQGQTVQIILDQTSFYGESGGQVGDTGTISRNDA 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I D + + IF+H V +G + + +D NR + NH+ATHLL AL Sbjct: 518 EIDI-DKVIRKKNIFLHCGTVRKGEICRNQLVETRVDKFNRAKAESNHTATHLLQSALKL 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ VSQ GS + + LRFD +P++ ++ +E VN I++N P+ + M+++DA Sbjct: 577 IIDKSVSQRGSLVGFNKLRFDFNSPQPLSKEQISQVESLVNSWISENHPIEVKNMDKDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + +GA A+ G KY D VRVV V S LCGGTHV +T E+ I+SE I +G Sbjct: 637 LKAGALAMFGEKYGDIVRVVDVPG-----VSMELCGGTHVQTTSEVGSFKIISEIGISSG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA++GQ + +DE + L+ LK + R++ + E + K Sbjct: 692 IRRIEALSGQLVLDYFKERDETVNKLSDLLKARPSQLFERIDSLQTELVNKNKEIQRMKD 751 Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 ++ S KI + + + I +D L+S L K+ ++++G + Sbjct: 752 EIAYFKYSSLSSSAKKIGSFSLIINQIDGLDGSSLQSAALDLTSKLGDKSVVILGGIPDT 811 Query: 834 --KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 KK ++ +DL+ R +A L +++ GG GGG+P+ AQ+G + +K + A+ Sbjct: 812 EKKKLLFVVSFGDDLVRRGMHAGKLINEISRICSGG-GGGKPNFAQAGAKDIDKLNDALE 870 Query: 891 GVASFL 896 L Sbjct: 871 YARKDL 876 >gi|283954216|ref|ZP_06371740.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414] gi|283794234|gb|EFC32979.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414] Length = 842 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 505/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+ T+ Sbjct: 2 DIRKAYLDFFALKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSQDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ G Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIIDEIAKLCGKAYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E + E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQICLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNA--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKTE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLNEDLKEVFSLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + ++ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVGDIIHAKIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YI+ ES + AGIR Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIIKESGVSAGIR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + + LK + +++ V+++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELFKIKNELKNN--DILSGVKKLKNEILNLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V + D+ ++K+++D + K +I+L+ I K++K ++ Sbjct: 732 SKTELDSKNIKGVEICVKRV---DNGDIKAMIDDFKNKFNKAVILLIQI-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V + A L + A++L GG GGGR A +GG + +K D+A+ ++K Sbjct: 788 VKDAP---LKAGVLVKEVAQIL-GGNGGGRDDFATAGGKDLSKIDEALKQSLETIEK 840 >gi|255321362|ref|ZP_05362522.1| alanyl-tRNA synthetase [Campylobacter showae RM3277] gi|255301515|gb|EET80772.1| alanyl-tRNA synthetase [Campylobacter showae RM3277] Length = 849 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 346/895 (38%), Positives = 510/895 (56%), Gaps = 55/895 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64 IR +L FF GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+ + T+ Sbjct: 2 DIREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW ++ ++I R +DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHESDDEAFALW--EQHIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ + + LPK SIDTGMGLER+ +++ K +N Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIMEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YD LF LI+ ++ G Y + ++RVI DH+RS +FL+A G EGRGYVLRR Sbjct: 239 YDSSLFMPLIEEVAKLCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M L+ +C MG Y L + K ++E +R E+ERF T+ Sbjct: 299 ILRRAIRHGYLLGIREPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIRLEEERFLATIA 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 GL L + L+ +I +G AFKLYDT G PLD+ D+L +GL +D F++ + Sbjct: 359 SGLELFESELART--KDIFSGKAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKFDELMS 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G + + + +L EK+G +F GY+ L Sbjct: 416 EQKARAKAAWKGSGDKSAKGDFKALLEKFGENKFSGYEELER------------------ 457 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +S V A++ + + + +G++ +FD TPFYA++GGQ GD+G G L Sbjct: 458 -----TSRVLALLDEDFKETQILKAGEQGWAMFDVTPFYAQSGGQAGDSGEIEGVADVLD 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 ++ G V + R +++ +HSATHLLH AL ++LG Sbjct: 513 TQKFFGLNLSNVAVKKELKIGDT------VKLKVSEQRAEIARHHSATHLLHAALRSVLG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 +H++Q GS + LRFD +H K +T+ EL IE+ VN IA+++ T IM+ E+A S Sbjct: 567 THIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNSAIAESIAAKTEIMDIEEAKNS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY D+VRV+S G S LCGGTHV++ +I +I E + AG+RR Sbjct: 627 GAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVANLSQIGAFFITKEGGVSAGVRR 681 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A + +++ L + LK + V+++ E + L+ K K + Sbjct: 682 IEAVCSKAALNLAKAWRGEIEELKTELKS--AEPMNAVKKLKAEIKSLK---DKTKQAKD 736 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 L+ + + +I D ++K+ +D + + + I+LV +++E K ++ V Sbjct: 737 AHALAVVNVNETKLCVAVI---DGGDIKATIDEFKNENEKAAILLVQVNEEGKIAMAAGV 793 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A + + +A++L GG GGG+ A +GG N + AI F K Sbjct: 794 KNAP---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAIRQALEFAK 844 >gi|205355365|ref|ZP_03222136.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346599|gb|EDZ33231.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421] Length = 842 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DVGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + ++ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ ++++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKSIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V +D+ A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 V-KDVP--LKAGTLVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|254527157|ref|ZP_05139209.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202] gi|221538581|gb|EEE41034.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202] Length = 886 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 314/908 (34%), Positives = 508/908 (55%), Gaps = 52/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F+ + H+++PS+SL+P +DPT+M T +GM+PFK +F G ++ + T Sbjct: 11 TGDEIRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+TK + L Sbjct: 70 SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSS 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V+ EDEE+ K+W++ G++ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 126 DNIIVSVFHEDEESEKIWREEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+G+R+IE +NLVFMQ + + + L +IDTGMGLERMA +LQ+K+N Sbjct: 186 -KGLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + +++ + Y ++ + +++ DH R+ LI+DG+ +N GRGY Sbjct: 245 NYETDLIFPIIKKASEISSLDYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG T+ + + M + YP+L LI ++ E+ RF Sbjct: 305 ILRRLLRRMVRHGRLLGITKEFLSDIASVGIKLMENYYPDLKNNNELILSEIKIEEVRFR 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LLD ++S +++ G AF+LYDT+G PL++ ++I + +DI F Sbjct: 365 ETLERGEKLLDEIISS--GQKLITGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQ 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + ++ Q+ RA+A S + + + + + T F G D L Sbjct: 422 REMDAQKERAKAASSKIDLTLEGSLEREI-DSFNKTIFNGEDCLDS-------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + ++ I V++A GQ+V++V DQT FY E+GGQ+GD G Sbjct: 467 ---------EAKIQGIFLDSNFVKKASEGQRVQIVLDQTSFYGESGGQVGDIGIICSTDA 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D + + +F+H IV+ GIL ++ ++ R + S NH+ATHLL AL Sbjct: 518 EVLV-DKVVRKKNVFLHDGIVKNGILTVGQTIKTIVNPAKRARASANHTATHLLQSALKE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +VSQ GS + + LRFD SKP++ +++ +E VN I QN P+V + M + +A Sbjct: 577 VVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKREA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA A+ G KY D VRVV V S LCGGTHV +T E+ I+SE I AG Sbjct: 637 LEKGALAMFGEKYGDEVRVVDVPG-----VSMELCGGTHVKNTSELGCFKIISEEGISAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA++GQ A + ++ + L+ LK + + RV + E K K Sbjct: 692 VRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSELINKNKEIQKMKD 751 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISK- 832 ++ S + + + + I +D L+S L ++ + +++L GI Sbjct: 752 EIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVILAGIPNP 811 Query: 833 -EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +K ++ ++++ +A L A++ GG GGG+P+ AQ+G + +K D A+ Sbjct: 812 ENRKLLFVVSFGDEVVKIGLHAGKLINEIARICAGG-GGGKPNFAQAGARDIDKLDFALD 870 Query: 891 GVASFLKK 898 + L+K Sbjct: 871 YAKNHLQK 878 >gi|121612666|ref|YP_001000209.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005165|ref|ZP_02270923.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|205830017|sp|A1VYL8|SYA_CAMJJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|87250291|gb|EAQ73249.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] Length = 842 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 504/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + V+ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K + EL+SIE VN++I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ V+++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V + A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|189499310|ref|YP_001958780.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1] gi|189494751|gb|ACE03299.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1] Length = 886 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 335/922 (36%), Positives = 504/922 (54%), Gaps = 67/922 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +FL++F+K H ++ S+ +IP DPTL+FTN+GM FK++F + Y Sbjct: 1 MKSSDIRQSFLDYFEKKEHTIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTEVWSLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +D+E+ ++WK + + D I++ DNFW M ETGPCGPCSEI D + Sbjct: 121 KERLYATVYQDDDESLEIWKTATDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTD 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + G + + R IE+WNLVF+Q+ ++ + LPK +DTGMG ER+ VLQ K Sbjct: 181 DLSG-RELVNADDHRVIELWNLVFIQYNRKADRSLEPLPKKHVDTGMGFERITAVLQSKG 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F L A TG+ Y +G + RVI DH R+ +F I DG +P NEGR Sbjct: 240 SNYDTDIFAPLFDAITAHTGVAYTATLDGERDMAMRVIADHARTLTFAITDGAVPGNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ YAR L +P++ L+ + MG+ +PEL + + +E+ ++SE+E Sbjct: 300 GYVLRRILRRAVRYARKLDCNQPVLYRLVGVIADTMGAVFPELKKQQATVEKIVKSEEES 359 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL RG+ + + + K++ ++G+ AF+LYDT+G PLD+ + + GL G+D Sbjct: 360 FLVTLGRGIEIFGEIAAALKASKEKSISGEDAFRLYDTYGFPLDLTRLMASEEGL-GVDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++EQ+ RAR T ++ + E+ G T F+GY+ L + R Sbjct: 419 KGFGACMKEQKERARKDRKQKQQITGDEGQWQWFEQKGPTVFLGYETLETEAQIIGVR-- 476 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++G ++++V DQTPFYAE+GGQ GD G Sbjct: 477 ------------------------------IAGSQMQLVLDQTPFYAESGGQTGDRGRIE 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVER----GILRTEM-------SLVLTIDYQNRRQLS 584 G+ + D +K + I V G + E + +D + R Sbjct: 507 GENYIFDVIDTRKDGDVIVHVAGTVYDRATGGEVTPESIAFSQAVQVQAQVDKETREATE 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS + PD LRFD +H + +++ EL+++E VN+ I Sbjct: 567 RNHTATHLLHAALRKVLGEHVQQKGSLVGPDRLRFDFSHFEKVSAGELEAVEAEVNERIR 626 Query: 645 QNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + +V +A GA A G KY DRVRVV V S LCGGTHVS+ G Sbjct: 627 EAGALVKHADIPYEAALEKGALAFFGDKYADRVRVVEVPG-----VSMELCGGTHVSNVG 681 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762 +I L I+SESSI +GIRRIEA++G+ A L G ++L+ + L+ V RV+E Sbjct: 682 QIGLFKIMSESSIASGIRRIEAMSGKAAEEVLWGDYQELQQVRQLLRTGGEESVAARVQE 741 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE + L KL L ++ + + + L+S+ L+ Sbjct: 742 LLEERKILDKKLQDMKLSLLLDKAIGELEQADTVNGCRIFVMKYDDSGADTLRSLGQFLR 801 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875 +KI G+ +L G ++ K +++ ++ + NA +L + +A ++ GGG GG+P A Sbjct: 802 EKIGRGVGLLAG-EEQGKVTLVGFAGDEAIRECGLNAGELVKKAAAMVQGGG-GGKPGFA 859 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 +GG N +++ ++ Sbjct: 860 TAGGKNPAGIPESMKVFEETVR 881 >gi|260654150|ref|ZP_05859640.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1] gi|260631135|gb|EEX49329.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1] Length = 879 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 354/905 (39%), Positives = 512/905 (56%), Gaps = 45/905 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR F++F+ G PS SL+P +DP+L+FT +GMVPFK + G E+P ++ Sbjct: 1 MSGKDIRRKFIDFWVSKGAHHFPSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPPVKSA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR ND++NVG T RHHTFFEMLGNFS+GGYFK ++ W+ LT+ LD Sbjct: 60 VTSQKCVRT----NDIENVGHTARHHTFFEMLGNFSWGGYFKHESLTWGWEFLTQVIGLD 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+Y T+Y +DEEA+K+W GL+ D I+R +NFW M GPCGP SEI +DQGE Sbjct: 116 GSRMYATIYKDDEEAYKVWHDEIGLADDHILRCGEEENFWFMGPQGPCGPDSEILYDQGE 175 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G + +RY+EIWN VF QF++Q LP+ +IDTGMGLER+ +++Q Sbjct: 176 KFSCGPNCHPGCDCDRYLEIWNHVFTQFDRQEDGSMLPLPRKNIDTGMGLERLTSLVQGV 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 TN+++ DLF LI+ ++G+ Y + + +VI DH+RS F++ADGILP+NEG G Sbjct: 236 TNDFETDLFLPLIRKVTDLSGVAYGSSAAGDLALKVISDHIRSVCFMLADGILPSNEGPG 295 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA+ Y RL+G P + LLP + +EM Y EL +++L I + + E+ RF Sbjct: 296 YVLRRLLRRAVRYGRLIGIDRPFLNDLLPVVVSEMSDPYAELAESQLTIRQIIDVEENRF 355 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 G+TL +G LL+ + K + L GDVAF+LYDT+G PL++ +I + L +D Sbjct: 356 GRTLSQGCALLNDEIDRAVKAGSKTLAGDVAFQLYDTYGFPLELTTEICSEKNLT-VDES 414 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + +Q+ RAR S +G T + +L+ + G F+GYD L Sbjct: 415 EFKAQMTQQKDRARKASKQVGVVITGDAFTALQNRLGTVPFVGYDALSS----------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 SS + +V G +V+ +GQ + V TPFYAE GGQ+GDTG Sbjct: 464 ------------SSQIVGLVCDGALVDRLETGQSGQAVVTPTPFYAERGGQVGDTGTLTA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +T +A + V V G L T+ + ++D + R ++ NH+ATHLLH A Sbjct: 512 VRTEAAVTGCFYRAGDLSVLDITVNSGALETDQFVTASVDKERRAAITRNHTATHLLHQA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV QNGS ++P+ LRFD TH + +T +++ +E N + N+PV T MN Sbjct: 572 LIDVLGGHVRQNGSLVSPEFLRFDYTHFEAMTPEQIRQVETLANRKVLANMPVDTEQMNL 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 DA A GA AL KY D VRVVS G S LCGGTHV +TGEI L+ IVSE SI Sbjct: 632 ADAKAKGAKALFEEKYGDVVRVVS-----AGDFSCELCGGTHVGATGEIGLVKIVSEESI 686 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA- 775 +G+RR+ A+TG + L++LA V VV +V + +E ++L A Sbjct: 687 GSGVRRLTAVTGMNSYDMFDKASSALRTLAQKFNVRPEGVVEQVVALEQENKELARQLAD 746 Query: 776 KRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K K L ++ ++ S I V ++ D ++ K +++ +G ++ Sbjct: 747 KVKSDLAGRLDGGIARTELDGCCLCSARIDGVPMDMMREAGDRVKDKEPRSVVVFMGQTE 806 Query: 833 EKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K +L +V E L ++A + + A ++GGGG GGRP MAQ+GG + K DQA+A Sbjct: 807 EGKVQILCMVGAEALKAGYHAGKIVKALAGLVGGGG-GGRPDMAQAGGRDCAKIDQALAD 865 Query: 892 VASFL 896 + Sbjct: 866 AEGIV 870 >gi|223039439|ref|ZP_03609727.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267] gi|222879235|gb|EEF14328.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267] Length = 849 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 348/895 (38%), Positives = 513/895 (57%), Gaps = 55/895 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64 IR +L FF GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+ + T+ Sbjct: 2 DIREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKRDAIAYAWEFVTQALKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW ++ ++I R +DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHERDDEAFALW--EQHIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ + + LPK SIDTGMGLER+ +++ K +N Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIMEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YD LF LI+ + G Y + ++RVI DH+RS +FL+A G EGRGYVLRR Sbjct: 239 YDSSLFMPLIEEVAALCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M L+ +C MG Y L + K ++E ++ E+ERF T+ Sbjct: 299 ILRRAIRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIKLEEERFLATIA 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 GL L + L+ +I +G+ AFKLYDT G PLD+ D+L +GL +D F++ + Sbjct: 359 SGLELFESELTRT--KDIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKFDELMS 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G + + + +L EK+G +F GY+ L Sbjct: 416 EQKARAKAAWKGSGDKSAKGDFKALLEKFGENEFSGYEELER------------------ 457 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +S V A++ + + + +G++ +FD TPFYA++GGQ GD+G G L Sbjct: 458 -----TSKVLALLDEDFKETQILKAGEQGWAMFDVTPFYAQSGGQAGDSGEVAGAADVLD 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + ++ G V + R +++ +HSATHLLH AL ++LG Sbjct: 513 TQKFFGLSLSNVTVKKELKIGDT------VKLKVSEQRAEIARHHSATHLLHSALRSVLG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 +H++Q GS + LRFD +H K +T+ EL IE+ VN I++N+ T IM+ EDA S Sbjct: 567 THIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNAAISENIEAKTEIMDIEDAKNS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY D+VRV+S G S LCGGTHVS+ +I +I E + AG+RR Sbjct: 627 GAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVSNLSQIGAFFITKEGGVSAGVRR 681 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A + +++ L + LK + +G V+++ E + L+ K K N Sbjct: 682 IEAVCSKAALNLAKAWRSEIEELKTELKST--EPIGAVKKLKAEIKSLK---DKAKQAKN 736 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 L+C + + ++ D ++K+ +D + + + I+LV +++E K ++ V Sbjct: 737 AHALACVNVNETKLCVAVL---DGGDIKATIDEFKNENEKAAILLVQVNEEGKIALAAGV 793 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A + + +A++L GG GGG+ A +GG N + A+ F K Sbjct: 794 KNAA---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAMRQAFEFAK 844 >gi|284032274|ref|YP_003382205.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836] gi|283811567|gb|ADB33406.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836] Length = 889 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 324/922 (35%), Positives = 502/922 (54%), Gaps = 62/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL++F+ GH ++PS+ L P DP L+F +GM F F GQ+ P Y Sbjct: 1 METSEIRRRFLQYFEDRGHTVVPSAPL-PSPDPNLLFNVAGMAQFVPYFVGQQTPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFK++AI+ AWDL+TK Sbjct: 60 TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKDQAIEYAWDLVTKPQSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D+ LY +VY ED+EA +WK+++GL D+I+R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGFDESVLYASVYYEDDEAIDIWKRVAGLPDDRIVRLGMKDNFWSMGVPGPCGPCSEIL 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G + + RY+E WNLVFMQ + + LP +IDTG+GL Sbjct: 176 IDRGPEFGADRDWEAGD--RYLEFWNLVFMQNVRGEGGGKEGYPILGELPNKNIDTGLGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I+ + +++G KY + + V RV+ DH+RS+ LI D Sbjct: 234 ERVAYLLQGVDNMYEIDEIFPVIERAAELSGRKYGVDHVDDVRFRVVADHVRSALMLIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NE GYVLRR++RRA+ RLLGY +P ++ LLP +M +YPEL I Sbjct: 294 GVTPGNEQGGYVLRRLLRRAVRSMRLLGYEDPSLVELLPTSLEQMKKSYPELETDFGRIS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E++ F +TL G + D + L G AF+L+DT+G P+D+ ++ Sbjct: 354 QIAYAEEDAFRRTLTAGTSIFDVAVKNVKAEGGARLAGAQAFQLHDTYGFPIDLTVEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F + EQR RA+A + G + + + G T+F GY L Sbjct: 414 EQGL-QVDTEGFRSLMTEQRERAKADARAKKLGHADTSGYRELREKGITEFTGYTELATD 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S ++ ++++G + + A G+ VEVV ++TPFYAE+GG Sbjct: 473 -----------------------SQIRGVLREGAVAQAAEPGETVEVVLEKTPFYAESGG 509 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G + DG++LQ+ DVQ+ +G+ VH V G+++ + + +D++ R + Sbjct: 510 QIADEGLIVADGVKLQVLDVQRPVKGLIVHKVKVLEGVVQPGLDVHAQVDHEWRVEACQA 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG Q+GS P LR D S + A IE+ N + Q+ Sbjct: 570 HSGTHVVHAALRQVLGPTALQSGSYNKPGYLRLDFAWSSALDQATRSEIEEVANLAVRQD 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 LPV + M +A GA AL G Y+++VRVV + GG S LCGGTHV + ++ Sbjct: 630 LPVSAQYMTLPEAREWGALALFGETYDEQVRVVEI----GGPWSRELCGGTHVKHSSQVG 685 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L + SESS+ AG+RR+EA G A L + ++ L+ LK + +V ++ E Sbjct: 686 ALTVTSESSVGAGVRRLEAFVGLEALRFLGRERSLVRLLSENLKTRPEELPAKVADLAER 745 Query: 767 YRKLQLIHAKRKLQ---LNVEDLSC--HKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 R + K + +L+ + V ++ H V+ +L+ + ++ ++ Sbjct: 746 LRAAEKELEKVRASQVMAAAGELAASPKDVFGVAYVGHRAPDGVNGGDLRKLALDVRGRM 805 Query: 821 ---QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + ++ LVG+ + K +V++ + + + R A DL R++A+ L GG GGG+ +AQ Sbjct: 806 PADKPAVVALVGV-NDGKPAVVVALNDTAREWRLKAGDLVRVAAEQL-GGRGGGKDDVAQ 863 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 GG + AD+A++ V + + Sbjct: 864 GGGTDPAGADKALSAVEHAVGQ 885 >gi|313887310|ref|ZP_07821001.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312923229|gb|EFR34047.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 871 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 332/917 (36%), Positives = 493/917 (53%), Gaps = 68/917 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+++GH ++PS+ ++ +DPTLMFTN+GM FK+I G ++P Y+ Sbjct: 1 MTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI+ AW LT+ L Sbjct: 61 ADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV+ D+EA W + + + D+II + DNFW M +TGPCGPCS Sbjct: 121 KDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ IEIWNLVFMQ++++ LP IDTGMG Sbjct: 179 EIHIDLRSEEERQAVCGRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ +Q K +NYD DLF LI+A E ++G +Y N + RV+ DH+R+ +F IA Sbjct: 239 FERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L EP++ LLP L MG AYPE++ + L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQREL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405 I ++ E+E F +TL +GL LL+ + L +D ++L+G AF LYDT+G PLD+ + IL Sbjct: 359 IASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELIL 418 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +D ++F++ ++EQ+ + W L E+ + F+GY+ L+ Sbjct: 419 SERGMT-LDQVAFDKLMQEQK-----SRARQAAAIDAADWEVLDEETTESTFVGYETLQI 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + RKV +K +VV +TPFYAE G Sbjct: 473 ETHILRYRKVADKKRSY----------------------------YQVVLAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G I K+ + VH + + + + R Sbjct: 505 GQIGDKGVLIAQDGTEYPIIDTKRENNLPVHIL--STLPANPKQPFIARVGDELRHLTEA 562 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHL+HHAL +LG+HV Q GS ++ D LRFD +H K +T E+ +E VN I Sbjct: 563 NHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIRA 622 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + P R + A GA AL G KY D VRV+ S LCGGTHV+STG+ Sbjct: 623 DRPRDEQRNVPIAKAKEMGAMALFGEKYGDEVRVIKYGD------SVELCGGTHVASTGQ 676 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I+SE SI AGIRRIEA+TG +A ++ +E+L+ L + ++ + Sbjct: 677 IGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL-KALDRLI 735 Query: 765 ----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E+ + ++ + Q+ ++ L+ + + + S K V +++++ Sbjct: 736 AEGAEQRKAIEQYTKAQAEQIALQALADQTKHGETTIVTVNKPMSSDVAKDVAGTIRERL 795 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 Q + L+G ++E K ++ ++++ DL+D+ NA L + A ++ GG GGG+PH A +GG Sbjct: 796 QGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLIKGG-GGGQPHFATAGG 854 Query: 880 PNGNKADQAIAGVASFL 896 N AI + S + Sbjct: 855 RNPEGLQAAIDHIVSLI 871 >gi|157164208|ref|YP_001467070.1| alanyl-tRNA synthetase [Campylobacter concisus 13826] gi|205830011|sp|A7ZE62|SYA_CAMC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|112800400|gb|EAT97744.1| alanyl-tRNA synthetase [Campylobacter concisus 13826] Length = 852 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 345/901 (38%), Positives = 511/901 (56%), Gaps = 56/901 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M N+ IR +L+FF+ GHE++ S+ L+P ND TL+FTN+GMVPFK+IFTG+ Sbjct: 1 MQNL-DIRKAYLDFFKSKGHEVVASAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58 Query: 61 V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 + T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 59 IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKEAIAYAWEFVTEVLK 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + +LY+TV++ D EAF++W + ++ ++I R +DNFW M +TGPCGPCSEIF+DQ Sbjct: 119 LPKDKLYVTVHESDYEAFEIWS--THIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G E +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +LQ Sbjct: 177 GAEHFNTPEDYMGGDGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAILQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K +NYD LF LI ++ G Y + ++RVI DH+RS +FL+A G EGRG Sbjct: 237 GKFSNYDSTLFMPLISEVAKLCGKPYVYESGASYRVISDHIRSVTFLLAQGTTFDKEGRG 296 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG EP M L+ +C MG Y L K ++E ++ E+ERF Sbjct: 297 YVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCELMGGHYTYLNDKKAAVKEQIKLEEERF 356 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+ GL L + L + EI +G+ AFKLYDT G PLD+ D+L +GL +D F Sbjct: 357 LATIASGLELFESELKNT--KEIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEARF 413 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ + EQ++RA+A G G + + + L EK+G +FIGY+ L+ Sbjct: 414 DELMSEQKARAKAAWKGSGDKSAKGDFKELLEKFGENKFIGYEELKS------------- 460 Query: 479 KPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + A++ + + ++ +G++ V+FD TPFYA++GGQ GD G +G Sbjct: 461 ----------KSKILALLDEEFKNIDGLDAGKEGWVMFDVTPFYAQSGGQCGDNGKIVGK 510 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L + A ++ G V +R + + +HSATHLLH AL Sbjct: 511 ADVLDTEKFHGLNLSLVKTSAALKVGDE------VELEVGSDRAETARHHSATHLLHAAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++G+H++Q GS + D LRFD +H K ++ E+ +E+ VN+ I T++M E Sbjct: 565 RAVVGTHIAQAGSNVEADRLRFDFSHPKALSGEEISKVENLVNEWIVNGANAKTQVMELE 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A SGA AL KY D+VRVVS G S LCGGTHV + EI +I ES + Sbjct: 625 EAKKSGAIALFNEKYADKVRVVSF-----GDVSKELCGGTHVKNIDEIGSFFITKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+ + A + +L+ L + + V+++ E + L+ K Sbjct: 680 AGVRRIEAVCSRAALNLARSFRAELEELKEE--LKSAEPLNAVKKLKGEIKGLK---DKL 734 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 K N L+ + D ++ +DS ++K+++D + + + I+L+ + +E K S Sbjct: 735 KNAKNSHALAFLNVNDTKLC---VASIDSGDIKTLIDEFKNEHEKAAILLIQVDEEGKIS 791 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + V A + +A++L GG GGG+ A +GG N + AI + + Sbjct: 792 LAAGVKNAP---IKAGAWVKFAAQIL-GGNGGGKDDFATAGGKNALAIEDAIRSSVEYAR 847 Query: 898 K 898 + Sbjct: 848 Q 848 >gi|73748005|ref|YP_307244.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1] gi|83305846|sp|Q3ZWC3|SYA_DEHSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|73659721|emb|CAI82328.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1] Length = 871 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 336/907 (37%), Positives = 512/907 (56%), Gaps = 47/907 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP Sbjct: 1 MFSSDELRENYLKFFEEKGHKRIVSSSLIPHNDPTLLLTTAGMVQFKPYYMGVAKPENPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + + QKC R D+++VG H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 61 MASCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQ 179 RL+ITVY +D+EA LWK+ G+ ++I+R+ DNFW ++GPCGPCSEI +D Sbjct: 116 PAERLWITVYLDDDEAIALWKEQ-GVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174 Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ G + + R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ ++ Sbjct: 175 GQETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K N Y+ D+F +++ + ++G KY + R++ +H R +FLIADG++P Sbjct: 235 QSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKA 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + R LG P ++ + A+ M YPEL + + + E + SE+ Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF +TL GL LL+ ++ I +G AFKLYDT+G P+++ +I +GL+ +D+ Sbjct: 355 ARFSETLATGLELLEEIVRQTKGGRI-SGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDL 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E QR++AR+ T F+GY+L Sbjct: 413 DGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAEKTCFVGYEL------------- 459 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S +K I+ +G V+ G + +V D++PFYAE GGQ+GDTG I Sbjct: 460 ----------AIQKSTIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G R ++ + G+F+H V G L+ + I+ + RR ++ NH+ATH+L Sbjct: 510 TGGGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQT 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG V Q GS +TPD LRFD +H KP++ E++ +E+ VND I +NLPV M Sbjct: 570 ALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMP 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A+ G AL G KY DRVRV+ V S+ LCGGTHV+++GEI L I+SESS Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESS 686 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TG+ A + + Q + L L+ L+ + ++ E+ EE L+ Sbjct: 687 VGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQ 746 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + Q++ + V + ++ V++ L+ D L+ K+ SG+I+L G Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GT 805 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K L +VT DL+ + ++A ++ + +++ GGGG GG+P+MAQ GG + +K D+A+ Sbjct: 806 VTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKSKLDEAL 864 Query: 890 AGVASFL 896 V + Sbjct: 865 QAVKGMI 871 >gi|257887497|ref|ZP_05667150.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733] gi|257823551|gb|EEV50483.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733] Length = 880 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 341/920 (37%), Positives = 505/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKSENGTTLSGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + + +I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ +L + Sbjct: 860 GKNPAGIPDALKAAKEWLAQ 879 >gi|328957192|ref|YP_004374578.1| alanine--tRNA ligase [Carnobacterium sp. 17-4] gi|328673516|gb|AEB29562.1| alanine--tRNA ligase [Carnobacterium sp. 17-4] Length = 882 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 341/919 (37%), Positives = 511/919 (55%), Gaps = 62/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF+ GH++ PS+SL+P DPTL++ NSG+ K F G P Sbjct: 1 MKKLSSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT+ Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY ED EA +WK+ GL+ D I+ DNFW + GP GP SEIF Sbjct: 117 WLGLDPEKLYVTVYPEDTEAKNIWKEKIGLTDDHIV--DVADNFWDIG-AGPSGPDSEIF 173 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E R++EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAFNDLPENDPENYPGGENERWLEIWNLVFSEFNHKPDGTYEPLPNKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I+ E ++ K + ++ +VI DH+R+ SF I D Sbjct: 234 RVVSILQDAPTNFETDLFMPIIKKVESLSKTKKYGENPTDDISFKVIADHVRAVSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E M L+P + + M S YPE+++ + I Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDEAFMYKLVPIVGSIMDSFYPEILEQEDFIV 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E+ERF +T++ GL +L+ ++ L + + G FKLYDT+G P+++ ++ Sbjct: 354 KVIKNEEERFHETINDGLTILNERITELKAKGETSIAGSDIFKLYDTYGFPVELTEEYAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G +D F + + QR RARA G S + FS + + F+GY+ Sbjct: 414 DEGFK-VDHEGFEKEMTAQRDRARAARSGEKSMGVQTRLFS--DLKEESLFVGYNKTTEM 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ I E++ A G++V ++FDQTPFYAE GG Sbjct: 471 -----------------------GTLEVIATDEELLNSAQPGERVRLIFDQTPFYAEMGG 507 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + KKA H + +L + VL +D R +++ Sbjct: 508 QVADKGVVTDTKGKLIAKVVEVKKAPAGQPLHIVEVVEVLTVGETYVLEVDKSLRNKITR 567 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL ILG H +Q GS +TP+ LRFD TH +T EL +E VN+ I + Sbjct: 568 NHTATHLLHQALKDILGEHANQAGSLVTPNHLRFDFTHFGQVTRDELDQMEQIVNEKIWE 627 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 ++ VVT + A GA AL G KY D VRVV+V G +S LCGG HVS+T EI Sbjct: 628 SISVVTVETDIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A + L + ++L +A+ +K Q +V+ +V+++ Sbjct: 683 GIFKIVSESGIGAGVRRIEAVTSEAAYTLLQTEQKRLIEVAAVVKAQQTQDVITKVQQLQ 742 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E ++ Q + + +L + + ++ V +S + D +L+ + D ++ Sbjct: 743 TELKEAQKENESLQAKLANDQAGDIFKNIQEVNGVTIVSAEVDVKDMNQLRQLADQWKQN 802 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S ++ L G S + K ++L V D + + F A DL + A ++GGGG GGRP MAQ+G Sbjct: 803 AVSNVLAL-GFSNDGKVNLLTAVDADTIKKGFKAGDLIKTIAPLVGGGG-GGRPDMAQAG 860 Query: 879 GPNGNKADQAIAGVASFLK 897 G N A+A VA ++K Sbjct: 861 GKNPAGLSDALAKVAEWVK 879 >gi|289432002|ref|YP_003461875.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT] gi|288945722|gb|ADC73419.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT] Length = 876 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 335/905 (37%), Positives = 513/905 (56%), Gaps = 47/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP + Sbjct: 8 SSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGMAKPENPRMA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC R D+++VG H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 68 SCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGE 181 RL+ITVY +D+EA LWK+ G+ ++I+R+ DNFW ++GPCGPCSE+ +D G+ Sbjct: 123 ERLWITVYLDDDEAIALWKEQ-GVPENRIVRLDAADNFWGPAGDSGPCGPCSEVHYDFGQ 181 Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + + R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ ++Q Sbjct: 182 ETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQS 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K N Y+ D+F +++ + ++G KY + R++ +H R +FLIADG++P GR Sbjct: 242 KKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKAGR 301 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + R LG +P ++ + A+ T M YPEL + + + E + SE+ R Sbjct: 302 GYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVITRMSGIYPELKKRQTYVLEMIASEEAR 361 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TL GL LL+ ++ I +G AFKLYDT+G P+++ +I +GL+ +D+ Sbjct: 362 FSETLATGLELLEEIVRQTKGGRI-SGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDLDG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +E QR++AR+ G T F+GY+L Sbjct: 420 FESEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGGKTCFVGYEL--------------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + I+ +G V+ G + +V D++PFYAE GGQ+GDTG I Sbjct: 465 --------ARQKSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G R ++ + G+F+H V G L+ + I+ + RR ++ NH+ATH+L AL Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQTAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG V Q GS +TPD LRFD +H KP++ E++ +E+ VND I +NLPV M Sbjct: 577 REVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMAYR 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A+ G AL G KY DRVRV+ V S+ LCGGTHV+++GEI L I+SESS+ Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESSVG 693 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG+ A + + Q + L L+ L+ + ++ E+ EE L+ Sbjct: 694 AGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQNL 753 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + Q++ + V + ++ V++ L+ D L+ K+ SG+I+L G Sbjct: 754 ERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVT 812 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K L +VT DL+ + ++A ++ + +++ GGGG GG+P+MAQ GG + +K D+A+ Sbjct: 813 EDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKSKLDEALQA 871 Query: 892 VASFL 896 V + Sbjct: 872 VKGMI 876 >gi|318057084|ref|ZP_07975807.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actG] gi|318077856|ref|ZP_07985188.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actF] Length = 889 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 332/907 (36%), Positives = 499/907 (55%), Gaps = 62/907 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH+++PS+SLI +DPTL+ +GMVPFK F G+ KP Sbjct: 1 MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F L+ RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + +I + ++TG+ Y + + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G +LD ++ +L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A S +G + + + + GAT F GY L G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + +G ++I DVQK G+ VH V+ G + + + ID RR ++ Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 HEMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVKGRPEELPEKIAGML 745 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + K + + ++ + ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTTADDLRRLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I ++ L ++ + +V+ F A DL R +AK LGGGG GG+P +A Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNG 882 Q GG N Sbjct: 865 QGGGQNP 871 >gi|227551394|ref|ZP_03981443.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330] gi|257895992|ref|ZP_05675645.1| alanyl-tRNA synthetase [Enterococcus faecium Com12] gi|293377450|ref|ZP_06623652.1| alanine--tRNA ligase [Enterococcus faecium PC4.1] gi|293570502|ref|ZP_06681557.1| alanyl-tRNA synthetase [Enterococcus faecium E980] gi|227179513|gb|EEI60485.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330] gi|257832557|gb|EEV58978.1| alanyl-tRNA synthetase [Enterococcus faecium Com12] gi|291609448|gb|EFF38715.1| alanyl-tRNA synthetase [Enterococcus faecium E980] gi|292643968|gb|EFF62076.1| alanine--tRNA ligase [Enterococcus faecium PC4.1] Length = 880 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 341/920 (37%), Positives = 505/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLSGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + + +I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ +L + Sbjct: 860 GKNPAGIPDALKAAKEWLAQ 879 >gi|302517973|ref|ZP_07270315.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78] gi|302426868|gb|EFK98683.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78] Length = 889 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 332/907 (36%), Positives = 499/907 (55%), Gaps = 62/907 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH+++PS+SLI +DPTL+ +GMVPFK F G+ KP Sbjct: 1 MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F L+ RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + +I + ++TG+ Y + + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G +LD ++ +L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRVTGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A S +G + + + + GAT F GY L G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + +G ++I DVQK G+ VH V+ G + + + ID RR ++ Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 HEMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVKGRPEELPEKIAGML 745 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + K + + ++ + ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTTADDLRRLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I ++ L ++ + +V+ F A DL R +AK LGGGG GG+P +A Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNG 882 Q GG N Sbjct: 865 QGGGQNP 871 >gi|257875750|ref|ZP_05655403.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20] gi|257809916|gb|EEV38736.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20] Length = 880 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 332/907 (36%), Positives = 496/907 (54%), Gaps = 63/907 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G E ERY+EIWNLVF +F Q LP +IDTGMGLE Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q N++ DLF +I A ++ ++ +VI DH+R+ SF I D Sbjct: 234 RMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V++ + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F Q ++ QR+RARA S + L + ++F+GYD L Sbjct: 414 DEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE-- 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +S + I+Q + + +G+ +++F +TPFYAE GG Sbjct: 469 ---------------------ANSELLVIIQDEALHDSVSTGE-AKLIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ DTG + + + KKA H + L+ ++ L +D R ++ Sbjct: 507 QVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATIKAPLKEGVNYFLQVDQHRRNKIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +TS EL +E VN I + Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPVVT + + A GA AL G KY VRVV+V S LCGGTHV++T +I Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNVA-----DWSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 + IVSES I AG+RRIEA+T Q A + L ++ +LK++A +K VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEVVAKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+LQ + +L + ++ + ++ ++ D +L+ + D ++K Sbjct: 742 AQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L + + K ++L + + ++ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 DHSDILVLA-TANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKA 885 G N Sbjct: 860 GKNPEGI 866 >gi|182439827|ref|YP_001827546.1| alanyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780491|ref|ZP_08239756.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1] gi|205830221|sp|B1W3I1|SYA_STRGG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|178468343|dbj|BAG22863.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660824|gb|EGE45670.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1] Length = 889 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 335/923 (36%), Positives = 500/923 (54%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH +PS+SLI +DPTL+ +GMVPFK F G+ KP V Sbjct: 1 MESAEIRRRWLSFFEERGHTAVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L+ITVY +D+EA ++W+ G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG++Y N V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAENSTDVSLRVVADHIRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T ++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +L+ + + ++L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILETAVTETKAAGGQVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR +A+A + +G + + + + GAT+F GY L G Sbjct: 415 EQGLS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYASLAG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL DTG + G +++ DVQK G+ VH +V+ G + + +ID RR ++ Sbjct: 511 GQLADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGML 745 Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMS----HIISEVDSKELKSVMDALQK 818 + + + K + + L DV + + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGTALVTGQVPDGTSADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ G ++ L + + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N A+A V + + Sbjct: 865 QGGGTNPAAIGDAVAAVERLVTE 887 >gi|317495192|ref|ZP_07953562.1| alanyl-tRNA synthetase [Gemella moribillum M424] gi|316914614|gb|EFV36090.1| alanyl-tRNA synthetase [Gemella moribillum M424] Length = 863 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 325/902 (36%), Positives = 511/902 (56%), Gaps = 54/902 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 +L+FF + GH++ PS+SL+P +DP+L++ NSG+ K F G+E P +T QK +R Sbjct: 1 MYLDFFVEKGHKIEPSASLVPVDDPSLLWINSGVATLKKYFDGREIPENPRITNSQKSIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127 ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K L++ +L + Sbjct: 61 T----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAIAWAWEFLTSEKWLALEKEKLSV 116 Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP--- 184 TV+ ED EA+ +W+ + GL D+IIRI NFW + E GP GP +EIF+D+G Sbjct: 117 TVHPEDTEAYDIWRNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGPEADTWS 173 Query: 185 -GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 E +RY+E+WN+VF Q+ LP +IDTGMGLER+ +VLQ+ N Sbjct: 174 PKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLERIVSVLQDVPTN 233 Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +D DLF +I+ E+++G KY V +VI DH+R+ +F IADG LP+NEGRGY+L Sbjct: 234 FDTDLFIPIIREIEKLSGAKYGVSKEQDVAFKVIADHIRTVTFAIADGALPSNEGRGYIL 293 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RRA+ +A++LG M L + M YP + ++ +++ + E++RF +T Sbjct: 294 RRLLRRAVRFAKILGLNSSFMYKLTDIVAEIMIDYYPNVKESVSFVKDVILKEEDRFHET 353 Query: 362 LDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 L G +L + + + ++++G+ AFKLYDT G P+++ ++ GL +DI FN+ Sbjct: 354 LHEGEAILTNIANEVKDTTKVISGEDAFKLYDTFGFPIELTEEYAEELGLT-VDIDGFNE 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E+Q+ RARA S + ++ G ++F+GY L Sbjct: 413 EMEKQKERARASRHDDSSMQVQSDLYN--RIIGDSEFVGYTQLIEK-------------- 456 Query: 481 PIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 SS + AIV ++ ++++ V+VVF++TPFYAE+GGQ+ D G I G Sbjct: 457 --------SSKLLAIVDKEDNLLDKYTGADVVKVVFERTPFYAESGGQVADCGEIIALGF 508 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++ DV+K + +H V G L L ++ R + NH+ATHLL+ AL Sbjct: 509 KGEVLDVKKLPDKRHIHFVKVVEGELLVGNEYGLVVNRNYRLNIEKNHTATHLLNEALRQ 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +G+H+ Q GS +T D LRFD+TH P+T E++ +E VN+ I L + T M +A Sbjct: 569 QVGTHIKQAGSLVTDDKLRFDITHFAPLTKEEIERVEQEVNEQIWNALEIKTEEMPIAEA 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA AL G KY D VRVVS+ G +S LCGGTH +++ E+ + I+SES + AG Sbjct: 629 RKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSSEVGIFKIISESGVAAG 683 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG+ A +L Q++ L S+ K + NV+ +V + E +KL + Sbjct: 684 VRRIEALTGRAAYEYLRSQEDTLSSVEKLTKSNSTNVIEKVSSLQVEIKKLTKEKEILQQ 743 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 ++ +L+ ++ V+ ++ ++ + LK ++D + K+++ +I I E Sbjct: 744 KIANAELNNLVNDIKEVNGVSVLTSVVESENMNHLKQLVDNAKSKLENYVIAFASI-NED 802 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K + ++ V + + D++NA L + A V G GGGRP MAQ+G N ++A + + Sbjct: 803 KVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKNKENINKAFEELLA 861 Query: 895 FL 896 + Sbjct: 862 NI 863 >gi|257460412|ref|ZP_05625513.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268] gi|257441743|gb|EEV16885.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268] Length = 847 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 344/895 (38%), Positives = 505/895 (56%), Gaps = 55/895 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64 IR+ +L FF GH+++PS+ L+P +D +L+FTN+GMVPFK+IFTG + T+ Sbjct: 2 DIRSEYLNFFASKGHQIIPSAPLVP-DDDSLLFTNAGMVPFKSIFTGAVPRPTPPIRTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + + Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKEQAIAYAWEFITEILKLPKDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LY+TV+++D++A++ W + ++ ++I R +DNFW+M +TGPCGPCSEIF+DQGE Sbjct: 121 LYVTVHEKDDKAYEFWAR--HIARERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K +N Sbjct: 179 HSPEDYMGGDGDRFLEIWNLVFMQYERSKDGKLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YD LF LI ++ G Y + ++RVI DH+RS FL+A G EGRGYVLRR Sbjct: 239 YDSSLFMPLIDEVAKLCGRPYVYESGASYRVIADHIRSVVFLLAQGTNFNREGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M L+ +C MG Y L + K ++E ++ E+ERF TL Sbjct: 299 ILRRAVRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKEAVKEQIKLEEERFFATLA 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L+ EI +G+VAFKLYDT+G PLD+ D+L + L +D F+ + Sbjct: 359 NGIELFNEELART--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLR-VDEAKFDALMS 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR A+A G G + +L EK+G +F GY+ L Sbjct: 416 EQRQIAKAAWKGSGDKNVRGDFKALLEKFGENKFSGYEEL-------------------- 455 Query: 484 LTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +S V A++ + V+E +G +FD TPFYA++GGQ GD+G Sbjct: 456 ---SRTSKVLALLNEDFAEVDELKAGDIGWAMFDVTPFYAQSGGQTGDSGEVESIADVFD 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 ++ + + +V + R Q++ +HSATHLLH AL +LG Sbjct: 513 TQKFYG------LNLSHLRLNRNLKIGDIVGLKVSEEREQIARHHSATHLLHAALRAVLG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 +H++Q GS + D LRFD +H K ++ EL IE+ VN+ + + T IM+ +DA S Sbjct: 567 AHIAQAGSLVEADRLRFDFSHPKALSDEELAKIEEFVNNAVCKGCAAKTEIMDIDDAKNS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY +VRVVS G S LCGG HV + EI +IV ES + AG+RR Sbjct: 627 GAIALFGEKYGSKVRVVSF-----GEISKELCGGIHVRNLSEIGSFFIVKESGVSAGVRR 681 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A + + KL +++ LK + +E++ +E R L+ + K + Sbjct: 682 IEAVCSRAALNLALQNRAKLAEISAELKG--IEPLRAIEKLKDEIRSLK---DQIKHASS 736 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 L+ + D + S ++K+++D + + IML+ + + K S+ V Sbjct: 737 SHALAFLNVGDTKLCVASVE---SGDIKTMIDEFKNSHEKAAIMLMQVGADGKISIAAGV 793 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A + +L A++LGGGG GGR A +GG + K ++AI S+ K Sbjct: 794 KNAP---IKAGEWVKLVAQILGGGG-GGRDDFATAGGKDVLKIEEAIKEAISYAK 844 >gi|257866118|ref|ZP_05645771.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257872448|ref|ZP_05652101.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10] gi|257800052|gb|EEV29104.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257806612|gb|EEV35434.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10] Length = 880 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 332/907 (36%), Positives = 496/907 (54%), Gaps = 63/907 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G E ERY+EIWNLVF +F Q LP +IDTGMGLE Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q N++ DLF +I A ++ ++ +VI DH+R+ SF I D Sbjct: 234 RMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V++ + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F Q ++ QR+RARA S + L + ++F+GYD L Sbjct: 414 DEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE-- 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +S + I+Q + + +G+ +++F +TPFYAE GG Sbjct: 469 ---------------------ANSELLVIIQDEALHDSVSTGE-AKMIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ DTG + + + KKA H + L+ ++ L +D R ++ Sbjct: 507 QVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATIKAPLKEGVNYFLQVDQHRRNKIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +TS EL +E VN I + Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPVVT + + A GA AL G KY VRVV+V S LCGGTHV++T +I Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNVA-----DWSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 + IVSES I AG+RRIEA+T Q A + L ++ +LK++A +K VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEVVAKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+LQ + +L + ++ + ++ ++ D +L+ + D ++K Sbjct: 742 AQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L + + K ++L + + ++ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 DHSDILVLA-TANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKA 885 G N Sbjct: 860 GKNPEGI 866 >gi|302525836|ref|ZP_07278178.1| alanyl-tRNA synthetase [Streptomyces sp. AA4] gi|302434731|gb|EFL06547.1| alanyl-tRNA synthetase [Streptomyces sp. AA4] Length = 887 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 335/918 (36%), Positives = 506/918 (55%), Gaps = 59/918 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL F+ GH +PS+ LI +DP L+F N+GMV FK F G+ P Y Sbjct: 1 MDTHEITDRFLRHFESRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK Sbjct: 60 TSVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIENAWELITKSQDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD R++ TVY++D EA LW+K++GL +D+I DN+W M GP GPCSEI+ Sbjct: 116 GFGLDPDRIWATVYEKDSEAAGLWRKLTGLPSDRIQVRDGKDNYWDMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------KQERFILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ + + LPK +IDTGMG+ Sbjct: 176 YDRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDQSPKLGHPPIGELPKKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+AT+LQ N Y+ DL + +I +E+ +G +Y + V RVI DH R+ LI D Sbjct: 235 ERVATILQGVENVYETDLVRPVIGRAEEFSGRRYGANHADDVRFRVIADHARTGVLLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N+GRGYVLRR++RR + RLLG EP++ + MG YPELI I Sbjct: 295 GVTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVSQTMGPTYPELISGFDRIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E +R E+E F TL G + D + K ++L GD AF+L+DT+G P+D+ ++ Sbjct: 355 EVVRVEEEAFLATLTSGSRIFDLAAAETKKGGGDVLAGDKAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL +D F +EEQR RA+A + SG + + + E++G T+F+GY L+ Sbjct: 415 EQGLT-VDEAGFRTLMEEQRKRAKADAAARKSGHGDLSEYRKVLEQHGETEFLGYTELQA 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + V +++ G V +G+K E+V D+TPFYAE+G Sbjct: 474 D-----------------------AKVVGLLEDGLPVRSVAAGRKAELVLDRTPFYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ DTG +GDG+ L++ DVQK G+FVH V +G + + L ++D R + Sbjct: 511 GQIADTGVLVGDGVELKVLDVQKIVPGLFVHRVEVTQGEVGIDTRLTGSVDANRRLSIER 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHL+H A+ G +Q GS P +RFD T +++ L +E VND + Sbjct: 571 SHSATHLVHAAVRGAYGKRAAQAGSLNAPGRMRFDFTTPGAVSTDILTEVEQEVNDYLQT 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 ++ V + ++ A+ GA AL G KY + VRVV + G +S LCGGTHV G++ Sbjct: 631 DVEVQSYTTTKDKALELGAVALFGEKYGNDVRVVDM-----GEYSRELCGGTHVGRIGQL 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ +VS++S+ +G+ R+EA+ G A H+ + + LA+ KV + GR+E++ Sbjct: 686 GLVKLVSDASVGSGVHRVEALVGPDALKHVRKEQLLVSQLANTFKVPSDELPGRIEDVLS 745 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + + + + Q + ++ V+ ++ ++ +VD L+++ ++ ++ Sbjct: 746 RLKNAEKEIEQLRTQQVLGSAGALADKAQDVSGVSVVAEVVPDVDGNGLRALASDIRGRL 805 Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 G++ L S EK A V+ + A L A+ + GG GGG+P MAQ G Sbjct: 806 GDRPGVVALFAPSGEKVAFVVATTSAARDKGIAAGKLVPSFAEAI-GGRGGGKPDMAQGG 864 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+QA+ + + + Sbjct: 865 GSNPAGAEQAVTALRAAV 882 >gi|294102019|ref|YP_003553877.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] gi|293616999|gb|ADE57153.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] Length = 881 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 339/908 (37%), Positives = 509/908 (56%), Gaps = 47/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR+ F++F++ G + PS SLIP NDP+L+FT +GMVPFK + G ++P + Sbjct: 5 TGKEIRSLFIDFWESKGSKHYPSFSLIP-NDPSLLFTIAGMVPFKPYYLGIQQPEFTRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI W+ LT+ L+ Sbjct: 64 TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGDYFKKEAITWGWEFLTEVIGLEP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY T+Y +DEEA+ +W+ GL +KI R ++NFW M TGPCGPCSEI +DQG Sbjct: 120 ERLYATIYKDDEEAYSVWRNEVGLPENKIYRFDKDENFWFMGNTGPCGPCSEIIYDQGPE 179 Query: 183 IPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P +RY+EIWNLVF QF+ Q LPK +IDTGMGLER+ +++Q Sbjct: 180 FSCGKPTCDVGCNCDRYLEIWNLVFTQFDLQEDGTLVPLPKKNIDTGMGLERLTSIVQRV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +++ DLFK LI +TG+ Y + N RVI DH+RS +F+IADGILPAN+GRG Sbjct: 240 RTDFETDLFKPLIDHICAMTGVTYGSSPSHNLAVRVIADHIRSVAFMIADGILPANDGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA Y +L+G P ++ L P + M Y EL+ + +IE+ + E++RF Sbjct: 300 YVLRRLIRRAARYGKLIGLDRPFLLELFPDVLDLMADPYRELLDNRPMIEQIVSMEEKRF 359 Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 G+TL +G L++ +S L + L+G +AF+LYDT+G PL++ +I +D Sbjct: 360 GRTLQQGTELIEQEISRLRLRHVDALSGTIAFELYDTYGFPLELTTEICAE-NDIKVDEA 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ +E+QR RARA S L S ++ + + G T F GY Sbjct: 419 GFHVEMEKQRERARASSKQLSSEMKGDVYSQIAAEKGQTSFEGY---------------- 462 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + + + + V A+++ G+ V+ G+ E V +PFYAE GG++GD G Sbjct: 463 -------VLSELDTEVVALIKDGQPVDFLSEGESGEAVLKVSPFYAERGGEIGDQGLLSA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G+++ +TD + + VH V G+L +++ ++D + R + NH+ATHLLH A Sbjct: 516 AGVKVCVTDTTSETADLIVHRVTVLEGVLTEGLAVHASVDKEKRESIRRNHTATHLLHEA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 LS +LGSHV Q GS + LRFD TH + +T ++ ++ED VN I +N+P+ T + Sbjct: 576 LSQVLGSHVRQAGSLVNEALLRFDFTHFESMTREQIAAVEDMVNRQILKNIPLETIESDL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E A GA AL KY D VRVV + S+ LCGG HV +TG+I I+ E I Sbjct: 636 EQAREMGAKALFDEKYGDIVRVVRI-----KDFSTELCGGLHVDATGDIGAFKIIKEEGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G RRI A+TG A ++ L + L ++ +V VE + E + L + Sbjct: 691 GSGTRRITALTGLNAFRAFQNSFRVVEDLCNVLTLTTDELVSHVENMQAEIKGLGRKIDE 750 Query: 777 RK---LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K L +++ +I + V + L+ + D ++ K ++ +I+L Sbjct: 751 LKLNNLAAAIDESVKKEILSNGTSIFQGSFKGVSADMLRELCDRIKVKNKNIVIVLASQI 810 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E+ ++ + ++ + +A + + A +LGGGG GG+P +AQ+GG K D+A Sbjct: 811 SEENVLIVAMADDEAMKAGAHAGKIVKEVAVILGGGG-GGKPAIAQAGGKKPEKIDEAFH 869 Query: 891 GVASFLKK 898 + ++K Sbjct: 870 ALRGIVEK 877 >gi|81428001|ref|YP_395000.1| alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] gi|123564683|sp|Q38YN9|SYA_LACSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78609642|emb|CAI54688.1| Alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] Length = 878 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 331/918 (36%), Positives = 489/918 (53%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF++ GH++ PS+SLIP DPTL++ NSG+ K F G+ P Sbjct: 1 MKQLTSAQVRQMFLDFFKEKGHDVEPSASLIPDEDPTLLWINSGVATLKKYFDGRVVPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFKEDAIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D++A ++W + GL+ D+II + DNFW + E GPCGP SEIF Sbjct: 117 WIGLDPEKLYVTVYPKDKDAHRIWHEKVGLAEDRIIEV--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E ERY+E+WN+VF +F E P +IDTGMGLE Sbjct: 174 YDRGQSFNNVSEDDPENYPGGENERYLEVWNIVFSEFNHLPNGEYVEQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288 R+ +V+QE N++ DLF LI+A+ ++ K G N ++ ++I DH R+ +F I D Sbjct: 234 RLVSVIQEAPTNFETDLFMPLIEATAAMSDHKQYGQNAADDISFKIIADHARAVTFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G +PANEGRGYVLRR++RRA+ + LG + M L+P + M S YP++++ K IE Sbjct: 294 GAMPANEGRGYVLRRLIRRAILNGKKLGINDAFMYKLVPIVGEIMHSYYPDVLEQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE++RF +TL+ GL LL+ + + +NG AFKL+DT G P+++ + Sbjct: 354 KVIRSEEDRFRETLNDGLRLLNQTIEAVKAENETEINGADAFKLFDTFGFPIELTTEYAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + + Q++RAR S ++ L ++F GY L Sbjct: 414 DEGLT-VDQAGFEKEMAAQKARARNARSDEQSMGSQNEV--LLNIKTKSEFTGYSELE-- 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q E +G ++VF+ TPFYAE GG Sbjct: 469 ---------------------TESRLADIIQDNAEQESVTTG-VAQLVFEATPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G ++ + A H + + + + L++D R + Sbjct: 507 QVADQGIIKNLAGQVVAEVTDVQYAPNGQPLHTVKVLKEMISGVHYTLSVDPTFRGGVVK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LG H Q GS + PD LRFD T+ +T +L +E VND I Sbjct: 567 NHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNLGQVTPDQLAEVEQIVNDKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPV T + E A GA AL KY VRVV + G +S LCGGTH ++T ++ Sbjct: 627 ALPVNTVETDIETAKQMGAIALFTEKYGKTVRVVQI-----GDYSMELCGGTHANNTSDL 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 L I SES I AG RRIEA+T + A +L + L LAS LKV ++ +++++ Sbjct: 682 GLFKITSESGIGAGTRRIEAVTSKAAFKYLNDKQVLLNELASELKVAQTKDLPKKIQQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + + Q + + K + E + + ++ EL+ + D Q+K Sbjct: 742 ADLKAEQKENEQLKAKFAQEQAGNVFENVVEAGQWRLVAADAKVAGMNELRQLADQWQQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++ + K S+++ V D + A DL + A ++GGGG GGRP MAQ+G Sbjct: 802 QISDVLVLATVAGD-KVSLIVAVAPDAIKAGIKAGDLIKQIAPLVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A FL Sbjct: 860 GKNPAGIPDALAAAKEFL 877 >gi|157414790|ref|YP_001482046.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116] gi|205830015|sp|A8FKT2|SYA_CAMJ8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157385754|gb|ABV52069.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116] gi|307747428|gb|ADN90698.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1] gi|315931702|gb|EFV10657.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327] Length = 842 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 507/897 (56%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEFLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LY+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLKNTPFYATSGGQSAD-------SGFMA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + V+ G + + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K ++ EL++IE VN++I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E+L + LK + +++ ++++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V I D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V +D+ A L + +A++L GG GGGR A +GG + +K ++A+ ++K Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840 >gi|239617978|ref|YP_002941300.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506809|gb|ACR80296.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] Length = 873 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 336/906 (37%), Positives = 509/906 (56%), Gaps = 50/906 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL+FF+ H +LPS+SLIP NDP LMFT +GMVPFK IF G+ +P Y V Sbjct: 4 MTGHEIRESFLKFFESKKHTILPSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYPRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ + Sbjct: 63 ATCQKCVRTV----DIDNVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWAWEYITEVLKIP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + +L+++VY +D+EA+++W+ G+S +I+R+ +DN+W TGPCGP SEIF D G Sbjct: 119 EDKLWVSVYHDDDEAYEIWRNNVGISEKRIVRLGKDDNWWGPAGPTGPCGPSSEIFVDTG 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +C + + R++E WNLVF ++ L K +IDTG+GLERMA ++ Sbjct: 179 RTKDCPDVENCSPACDCGRFLEFWNLVFTEYNMDGDGNLTRLKKKNIDTGLGLERMAAIM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q ++N++ D+FK +++ E + +KY ++ V+ RVI DH R+ +FLI DG+LP+NE Sbjct: 239 QGVSSNFETDMFKPIVERIEGLLNVKYGVSDKSDVSIRVIADHSRAITFLITDGVLPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRIMRRA+ + LLG ++P + + + +G YPE+ + L+EE E+ Sbjct: 299 GRGYVLRRIMRRAIRHGSLLGSSKPFLYKIPEVVVVTLGDVYPEIKEKLSLVEEITLKEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF T + G L ++ + L+G+ F L+DT+G L+++++I+ + L +D Sbjct: 359 ERFLTTFESGTKRLWQIVEKKNR---LDGEDLFLLHDTYGFHLELVEEIVAEKNL-PLDK 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR RAR + + + E G T+F+GY+ L Sbjct: 415 EGFKALMEQQRERARKAAGNVEYEKDSSRYRKAYEIIGGTKFVGYEKL------------ 462 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V + + I++ +I EE G+K E++FD TPFY E GGQ+ D G Sbjct: 463 -----------TVKTKIAHILKDEKITEELSKGEKGELIFDITPFYPEKGGQVADRGIIK 511 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ V + + VH +V+ G +++ L +D +NRR + NH+ATHLLH Sbjct: 512 TAEGFAEVEHVFIPFQDLIVHRVLVKSGKIKSGDLATLIVDKENRRSTARNHTATHLLHA 571 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ILG HV Q GS + + LRFD +H + E++ IE+ VN I + +PV + Sbjct: 572 ALRKILGEHVKQAGSLVEAERLRFDFSHYTALDKEEIQKIEELVNRKILEAIPVDVAEKS 631 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+ AL KY DRVRVVS+ G S LCGGTHV +TGEI L IVSESS Sbjct: 632 FEEVKNEDVVALFQEKYGDRVRVVSI-----GDFSKELCGGTHVKNTGEIGLFKIVSESS 686 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEAITG ++ + ++ L + L+V Q V ++ + + + Sbjct: 687 VSAGVRRIEAITGLKSLEKMTELMNLVEELRAVLEVPQEAFVEKIINLNGKLKDQAKELK 746 Query: 776 KRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L + + + D ++ ++ +++ D L +K+ G+++L Sbjct: 747 RLKEKLLSGEGASSLERKLTLDDAQVLARVVENTSMDVVRNTADVLMQKLGKGVVILFNR 806 Query: 831 SKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K ++ V+++L ++ A DLAR A LGGGG GGRP AQ+GG + + I Sbjct: 807 MPESGKVVFVVKVSKELQQKYRAGDLARKIATELGGGG-GGRPDFAQAGGKKIERVEWVI 865 Query: 890 AGVASF 895 + F Sbjct: 866 KNLEKF 871 >gi|261207793|ref|ZP_05922478.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289566245|ref|ZP_06446677.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|294616584|ref|ZP_06696360.1| alanyl-tRNA synthetase [Enterococcus faecium E1636] gi|294617900|ref|ZP_06697509.1| alanyl-tRNA synthetase [Enterococcus faecium E1679] gi|260078176|gb|EEW65882.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289161952|gb|EFD09820.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|291590534|gb|EFF22267.1| alanyl-tRNA synthetase [Enterococcus faecium E1636] gi|291595845|gb|EFF27129.1| alanyl-tRNA synthetase [Enterococcus faecium E1679] Length = 880 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 340/920 (36%), Positives = 502/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ ++ + Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879 >gi|255039401|ref|YP_003090022.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053] gi|254952157|gb|ACT96857.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053] Length = 886 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 320/930 (34%), Positives = 484/930 (52%), Gaps = 81/930 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ H ++PS+ L+ NDPTLMF NSGM FK+ F G P + + Sbjct: 1 MTSHQIRQAFLDFFRSKEHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW+LLT + L Sbjct: 61 ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTDVYKLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY++V++ D+EA+ LWK I G ++II DNFW M +TGPCGPCS Sbjct: 121 KDRLYVSVFEGNEADGVPFDQEAWDLWKGIVG--EERIILGNKKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + +EIWNLVFMQFE++ LP +DTGMG Sbjct: 179 EIHIDLRSPAEVAEVSGKSLVNNDHPQVVEIWNLVFMQFERKADGSLIPLPSTHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFL 285 ER+ +Q+KT+NYD D+F++ I E ++G KY N+ + RVI DH+R+ SF Sbjct: 239 FERLCMAIQQKTSNYDTDVFQNTINVLETLSGKKYGQNDEPFADIAMRVISDHIRAVSFA 298 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+N GYV+RRI+RRA+ Y LG+ EP L+P L + + EL + Sbjct: 299 ITDGQLPSNVKAGYVIRRILRRAVRYGYSYLGFQEPFFHKLVPVLAEQFKDVFTELKDQE 358 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402 + + E++ F +TL+ GL LD ++ L + + GD F+L DT G P+D+ Sbjct: 359 EFVTRVILEEEKSFLRTLESGLKRLDSIIGGLKETGLNTIPGDEVFELSDTFGFPVDLTA 418 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 I + ID + AL EQ+ R+R + W L+E G +F+GYD Sbjct: 419 LIAREKNFR-IDEAGYQDALAEQKKRSRQD-----AAKEATDWIELRESDGV-EFLGYDF 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + RKV +G++ +V D+TPFYA Sbjct: 472 EETHSHIVKYRKVKT----------------------------KAGEEYHIVLDRTPFYA 503 Query: 523 EAGGQLGDTGCAIGDGI------RLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLT 574 E GGQ+GDTG + + R KK +FVH + + + Sbjct: 504 EMGGQVGDTGALLLNSGSKEDGARSISIVDTKKENDLFVHISRDKNLDEALSGAGIVTAQ 563 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 I+ + R ++ NH+ATHL+ ++ +LG+HVSQ GS + + LRFD H +T EL+ Sbjct: 564 INVERRNKIKSNHTATHLMLSSMREVLGTHVSQKGSYLNDEVLRFDFAHFSKVTDEELRK 623 Query: 635 IEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IED VN+ I +N+ + R + + A+ +GA A G KY D VR++ + + S L Sbjct: 624 IEDRVNEKIRENIALEERRNVPIQQALDAGATATFGEKYGDFVRLIIFDPK----FSFEL 679 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHV STGEI + +SE S+ AG+RR+EA+TG++A + Q+E L + LK Sbjct: 680 CGGTHVPSTGEIGVFKFISEGSVSAGVRRVEAVTGEKALELMRQQEETLNKIKDLLK-GP 738 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSK 807 +++ VE + EE LQ + + + ++ L + + N + + + Sbjct: 739 TDLIKAVENLIEERSALQKKISALENEK-IQALKTTLVENMETHSTFNLIVQKVDVPSAD 797 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGG 865 LK + L+ ++++ +I + G K + + + E+++ NA + + A+ + G Sbjct: 798 SLKQLSYELRDQVEN-LIAVFGAEIGGKPQLSVFIAENIVAETGLNAGKIVKDLAREIRG 856 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 G GGG+P A +GG + + D A+ Sbjct: 857 G-GGGQPFFATAGGSDASGLDVALEKAKGL 885 >gi|269216088|ref|ZP_06159942.1| alanine--tRNA ligase [Slackia exigua ATCC 700122] gi|269130347|gb|EEZ61425.1| alanine--tRNA ligase [Slackia exigua ATCC 700122] Length = 901 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 337/917 (36%), Positives = 501/917 (54%), Gaps = 61/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQ 59 + IR +L FF++ G + LPSSSLIP +DP+L+ T++GMV FK F + P Y Sbjct: 22 MTTAEIREKYLRFFEEKGCKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPNYI 80 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TTVQKCVR ND+D +G T RH +FFEMLGNFSFG YFK A++ T+ + Sbjct: 81 GATTVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGVYFKHEMCTWAYEFSTEVLE 136 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + RLY TV+++D+E ++WK + G+ I R+ +DNFW TGPCGPCSEI+FDQ Sbjct: 137 LPKDRLYFTVFEDDDETIEIWKSL-GVLESHITRLGEDDNFWRAGPTGPCGPCSEIYFDQ 195 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G P ++G+R++E WN VF QF+ Q LP +IDTGMGLERMA ++Q Sbjct: 196 GPDFEGDAP--GDDGDRFLEFWNCVFTQFDGQEDGTLAPLPTKNIDTGMGLERMAAIMQG 253 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN------------IVNHRVIVDHLRSSSFLIA 287 +NY+ D+ + L+ E+++G Y G ++ R+ DH RS +F+IA Sbjct: 254 VQSNYETDVLRDLVAVGERLSGASYRGGTNATAGDGAQAKVDLSLRICADHSRSVAFMIA 313 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DGILP+NEGRGYVLRR++RRA+ + LG P + L + MG YPE++ + L+ Sbjct: 314 DGILPSNEGRGYVLRRLLRRAVMHGHKLGIEGPFLGEYLAKIIELMGDVYPEIVDNRELV 373 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E + SE+ERFG+TL G L LS L +L G AF L+DT+G P+++ ++I Sbjct: 374 ERIILSEEERFGRTLRTGQAYLVDELSALD-GSVLPGQTAFTLHDTYGFPIELTEEICSE 432 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLR 464 G+ +D F+ +EEQRSRARA + G + ++ GA F+GY+ Sbjct: 433 SGVT-VDHAGFDACMEEQRSRARAATKGDAEAAWSTYGGVHAETLKEVGANIFVGYEHTE 491 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 +S + A+++ G V G++ E+V +TPFYAE Sbjct: 492 -----------------------AASSIVALIKDGARVARIEQGEEAELVLAKTPFYAEM 528 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GG++GDTG G G Q+ D + G+ H V +G L + +D R +++ Sbjct: 529 GGEVGDTGTIEGAGGYAQVEDTKAPEAGLICHRVKVVKGSLSVGEDVAAAVDADRRARIT 588 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATH+LH AL +LG HV+Q GS + PD LRFD H P+T+ E+K +ED N +I Sbjct: 589 RNHTATHILHAALRQVLGDHVNQAGSYVGPDRLRFDFAHFAPMTADEIKQVEDLANAVIM 648 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + ++A ASG AL G KY D VRVV + G S LCGG HV +T E Sbjct: 649 SATDMNIYETSLDEARASGVTALFGEKYGDTVRVV-----EAGGFSRELCGGCHVRNTAE 703 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I LL +V+E+S+ A RRIEA+T A +L + +L + AS LK + +V RV Sbjct: 704 IGLLKVVAETSVAANTRRIEAVTSYAALDYLNTRAAELDAAASALKSAPLDVAARVAANL 763 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIA----DVNFMSHIISEVDSKELKSVMDALQKKI 820 ++ + + K D S + A + + +D +++V D ++ ++ Sbjct: 764 ATIKEFEAEARRAKQAAAESDASAYLDAMVDVGYPLIVIRVDGLDGGAMRNVWDVVRARM 823 Query: 821 QSGIIMLVGISKEKKASVL-IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +++G + K ++ E + FNA D+ + ++ + GG GGG+P MAQ+GG Sbjct: 824 PKPGALVLGAVTDGKPIIMAAASDEAVAAGFNAKDVIKQASSHIKGG-GGGKPTMAQAGG 882 Query: 880 PNGNKADQAIAGVASFL 896 + + D A+ +FL Sbjct: 883 KDASGMDAALEAARAFL 899 >gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa] gi|313471500|sp|B9HQZ6|SYAP_POPTR RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa] Length = 994 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 328/925 (35%), Positives = 500/925 (54%), Gaps = 69/925 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +IR FLEF+ H++LPS+SL+P +DPT++ T +GM+ FK IF G+ T Sbjct: 99 SGDAIRRRFLEFYASRSHKVLPSASLVP-DDPTVLLTIAGMLQFKPIFLGKAPRQVPRAT 157 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+L TKEF L Sbjct: 158 TAQKCIRT----NDVENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPA 213 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+++VY++D+EAF++W G+ ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 214 DRLWVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYDFHPE 273 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G + R+IE +NLVFMQ+ + + L + +IDTG+GLER+A +LQ+ N Sbjct: 274 -RGYKNTDLGDDSRFIEFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPN 332 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ + Y + +N ++I DHLR+ +LI+DG+LP+N GRGY Sbjct: 333 NYETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGY 392 Query: 300 VLRRIMRRAMCYARLLGY-----TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 V+RR++RRA+ RLLG + + + P++ I + L+ E Sbjct: 393 VVRRLIRRAVRTGRLLGVKGGGEDGVFLPAIAEKVIELSPHIDPDVKARGHSILDELQRE 452 Query: 355 DERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + RF +TL+RG LLD +L+ L+G F LYDT G P++I ++ Sbjct: 453 ELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAEE 512 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +G+ ID+ F +E QR +++A + L E T+F+GYD L Sbjct: 513 QGVK-IDMDGFEVEMENQRRQSQAAHNVVKLAVENG--GDLAENVHDTEFLGYDTL---- 565 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++V++++ G+ V + G +VEV+ ++TPFYAE+GGQ Sbjct: 566 -------------------SARAVVESLLLNGKSVIQVSEGSEVEVLLNKTPFYAESGGQ 606 Query: 528 LGDTGC------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 +GD G ++I DVQK +FVH + G+L + +D + R+ Sbjct: 607 IGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVDAKLRQ 666 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + ++H+ATHLL AL ++G SQ GS + D LRFD +P+ +EL+ IE+ +N Sbjct: 667 RAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELEEIENLING 726 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + T++M+ DA +GA A+ G KY ++VRVV V S LCGGTHVS+ Sbjct: 727 WIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGTHVSN 781 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T EI I+SE I +GIRRIEA+ G+ ++ +D ++K L S LKV V RV+ Sbjct: 782 TSEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEVTTRVD 841 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS--CHKI------ADVNFMSHIISEVDSKELKSVM 813 + EE R ++ + + + V S K + + + + D+ LKS Sbjct: 842 NLLEELRTVRNEVSALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADALKSAA 901 Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 + L +Q I+L E K S++ T ++D A AK+ GGGG GGR Sbjct: 902 EYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGVVDIGIQAGKFIGPIAKLCGGGG-GGR 960 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P+ AQ+GG A+ + L Sbjct: 961 PNFAQAGGRKPENLTNALEKARTDL 985 >gi|293553477|ref|ZP_06674105.1| alanyl-tRNA synthetase [Enterococcus faecium E1039] gi|291602354|gb|EFF32578.1| alanyl-tRNA synthetase [Enterococcus faecium E1039] Length = 880 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 340/920 (36%), Positives = 502/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIITAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ ++ + Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879 >gi|239986424|ref|ZP_04707088.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379] gi|291443371|ref|ZP_06582761.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] gi|291346318|gb|EFE73222.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] Length = 889 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 334/923 (36%), Positives = 502/923 (54%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH +PS+SLI +DPTL+ +GMVPFK F G+ KP V Sbjct: 1 MESAEIRRRWLSFFEERGHTAVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L+ITVY +D+EA ++W+ G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG++Y N V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T ++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +L+ + + ++L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR +A+A + +G + + + + GAT+F GY L G Sbjct: 415 EQGLS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL DTG + G +++ DVQK G+ VH +V+ G + + +ID RR ++ Sbjct: 511 GQLADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGML 745 Query: 765 EEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + K + + + S + V ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805 Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ G ++ L + + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N A+A V + + Sbjct: 865 QGGGTNPAAIGDAVAAVERLVSE 887 >gi|257898621|ref|ZP_05678274.1| alanyl-tRNA synthetase [Enterococcus faecium Com15] gi|257836533|gb|EEV61607.1| alanyl-tRNA synthetase [Enterococcus faecium Com15] Length = 880 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 341/920 (37%), Positives = 503/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVAAIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + I+ ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETISGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ +L + Sbjct: 860 GKNPAGIPDALKAAKEWLAQ 879 >gi|304436481|ref|ZP_07396455.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370527|gb|EFM24178.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 890 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 333/912 (36%), Positives = 511/912 (56%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 +R +L FF +K GH LPS SL+P NDPTL+ +GM P K FTG+ KP Sbjct: 19 MTGKELREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHR 78 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + T Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L Sbjct: 79 IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 134 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++T+Y D+EA ++W + GLS D I+ + DNFW + GPCGP SEI+ D G Sbjct: 135 PKEKLWVTIYPNDDEARQIWLEQPGLSPDHIVPL--EDNFWEIGP-GPCGPDSEIYIDLG 191 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +R++EIWNLVF Q+++ E +L +IDTG GLER+A+V+Q Sbjct: 192 EERGCGSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQ 251 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I+ + V+ +Y + ++ +VI DH RS +I DGILP+NEG Sbjct: 252 NKKTNFETDLLYPVIEYAANVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEG 311 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS--AYPELIQAKLLIEETLRSE 354 RGYVLRR +RRA+ + R+LG T+P + + A+ G + EL+ + I +R E Sbjct: 312 RGYVLRRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIRRVIRIE 371 Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF TL +G+ LL+ + +IL G+V FKLYDT+G P ++ ++IL GL Sbjct: 372 EERFAATLVQGIDLLNEEIDTLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK- 430 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F Q +E+QR+RAR+ D Sbjct: 431 LDDAGFVQEMEKQRNRARSARA-----------------------------ENQAVAVPD 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 L + + V AI + G +V+ G+ ++ TPF+AE GGQ+GD G Sbjct: 462 LSGLDTSALTENAEVREANVVAIWRDGTLVDMLHDGESAGIILSTTPFHAEGGGQVGDAG 521 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D R+ I + ++ +G H A VE G ++ ++ + +D ++ + NH+ATHL Sbjct: 522 LLLSDVGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHL 581 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL I+G HV Q GS +TP+ LRFD T+ +P+T +++ IED VN+ I ++ + Sbjct: 582 LQAALQRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEILSSIDLDIS 641 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M A GA AL G KY D VRVV V S LCGG+HVS+TG+I L I+ Sbjct: 642 TMPIAVAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEAITG+ A ++ D +++L+ LKV G++ +V+++ +E + +Q Sbjct: 697 ESGVAAGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLPTQVDKLIDEKKNMQE 756 Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A + Q + + L +I + + ++ +EL+++ D +K+ +GI++L Sbjct: 757 QLRTYADSRDQADAQKLLSDVQEIGKFHVIVGKVNVYSMEELRNIADLACEKLSAGIVVL 816 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G++ K ++++ +D + +A ++ + +AK +GGGG GGRP MAQ+GG Sbjct: 817 -GMADNDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGG-GGRPDMAQAGGKIPQNLS 874 Query: 887 QAIAGVASFLKK 898 QA +++ Sbjct: 875 QAFDDAVLIIRQ 886 >gi|260881197|ref|ZP_05403859.2| alanine--tRNA ligase [Mitsuokella multacida DSM 20544] gi|260849786|gb|EEX69793.1| alanine--tRNA ligase [Mitsuokella multacida DSM 20544] Length = 871 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 333/911 (36%), Positives = 512/911 (56%), Gaps = 59/911 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + + +R +L+FF +K GH LPS SLIP +DPTL+ +GM P K FTG+ KP Sbjct: 1 MSGNELREAYLQFFSEKKGHLRLPSFSLIPQDDPTLLLIGAGMAPLKPFFTGKMKPPRTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK AI AW+ LT+ +L Sbjct: 61 VTTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKGEAIPWAWEFLTEVIEL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TVY +D EA ++WK G D I+++ DNFW + GPCGP SEI+ D G Sbjct: 117 PKDKLWVTVYPDDTEAIEIWKSQPGFPQDHIVKM--EDNFWEIGP-GPCGPDSEIYIDLG 173 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +RY+EIWNLVF Q+++Q L +IDTG GLER+A+V+Q Sbjct: 174 EERGCGSPTCAVGCDCDRYLEIWNLVFTQYDRQEDGSYKNLAHKNIDTGCGLERLASVVQ 233 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I+ + +V G++Y + ++ +VI DH RS + +I DGILP+NEG Sbjct: 234 NKKTNFETDLLYPIIEYAAKVAGVEYGKDEKTDISLKVIADHARSMAVMIMDGILPSNEG 293 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354 RGYVLRRI+RRA+ + R+LG + + A+ A + ELI I++ + E Sbjct: 294 RGYVLRRILRRAIRHGRMLGIKGKFLEGAVDAVVEIYRDASDFGELIAKHDYIKKVISIE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++RF TL++G+ LLD + L D L G+V F+LYDT G P ++ ++IL GL Sbjct: 354 EDRFAATLNQGMELLDAEIKSLKADGKDELPGEVGFRLYDTFGFPWELTEEILHENGL-D 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++A++EQR RAR+ + D Sbjct: 413 LDKEGFDKAMDEQRERARSARA-----------------------------ENQRVAVPD 443 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + V AI + G++V+E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 444 LSGIDVSKLKVDPEAKEAKVVAIWKDGKLVDEITDGEEAGIILDKTPFYAEGGGQVGDEG 503 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+ R++ T+ +K +G H + VE G L+ ++ + +D + + + NH+ATHL Sbjct: 504 LLLGEFGRIKATNAKKLPDGTVYHVSYVEEGQLKVGETVKIEVDQEKKLASARNHTATHL 563 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++G V+Q GS +TPD LRFD T+ +P+T+ +L +E VN +I + V Sbjct: 564 LQAALKKVVGDQVNQAGSSVTPDRLRFDFTNFEPVTAQQLADVEALVNKVILKGQDVEIS 623 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A +GA AL KY D VRVV V S LC G+HV + G+I + IV Sbjct: 624 HMSLDEAKKAGAMALFSEKYGDVVRVVRVPG-----FSMELCAGSHVKNVGQIGMFKIVG 678 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E+ I +G+RRIEAITG+ A + + L+ A+ LK ++ +V VE++ E +++ Sbjct: 679 ETGIASGVRRIEAITGKAALDYANEKLATLQKAAALLKANEDDVPAAVEKLQAEGKEMAG 738 Query: 771 ---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ + K I V+ ++ + + L+ V D K+ SG+++L Sbjct: 739 KLAEVAAMQEKADAQQLIAGVKDINGVSVITGKANVENMDSLRDVADLTLDKLGSGVVVL 798 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G + + K ++++ ++D + R +A + + +A V+GGGG GGRP MAQ+GG Sbjct: 799 -GCANDGKVNLVVKASKDAVKRGIHAGKIIKEAAAVVGGGG-GGRPDMAQAGGKKAEALP 856 Query: 887 QAIAGVASFLK 897 QA A+ ++ Sbjct: 857 QAFEKAAAVIE 867 >gi|325844825|ref|ZP_08168277.1| alanine--tRNA ligase [Turicibacter sp. HGF1] gi|325489012|gb|EGC91400.1| alanine--tRNA ligase [Turicibacter sp. HGF1] Length = 873 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 336/912 (36%), Positives = 511/912 (56%), Gaps = 61/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L FF+ GH + P + L+P NDP+L++ NSG+ K F G+E P + Sbjct: 4 MTGSEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E A+ W+LLT + F Sbjct: 64 TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D+ LY+TVY D+E + LW K+ G+S D I+++ NFW + E GPCGP +EIF+D+ Sbjct: 120 FDKELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEY--NFWEIGE-GPCGPNTEIFYDR 175 Query: 180 G-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231 G E I L E +RYIEIWN+VF Q+ + E +LP +IDTGMGLE Sbjct: 176 GTKYDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A V+Q N+D DLF +I+A+E+++G+KY +VI DH+R+ +F +ADG L Sbjct: 236 RVACVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGAL 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +NEGRGYVLRR++RRA+ Y + LG M L+P + M YP + L+++ + Sbjct: 296 LSNEGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVI 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +SE++RF +TL G +L +++ D+ ++G AF LYDT+G P ++ + G Sbjct: 356 KSEEDRFRQTLADGEKILTDLIAKCE-DKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ +E QR RAR + S ++ +L ++F+GY L Sbjct: 415 -VDKEGFDAQMEAQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +S V ++Q GE+V+ +V+ D TPFYAE+GGQ+ DT Sbjct: 464 ---------------STTSNVILLLQNGEVVDSLTG--AGQVILDTTPFYAESGGQVADT 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TDV K G + H++ G L +V + +NR L+ NH+ATH Sbjct: 507 GMMTTSAANVMVTDVIKAPNGQHL-HSVQVDGTLSLNDEVVCQVQVENRLDLTKNHTATH 565 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE VN+ I ++PV Sbjct: 566 LLHQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEV 625 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A GA AL KY + VRVV G +S LCGG HVS+T EI L I+ Sbjct: 626 FEKSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKII 680 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TG+ A ++ E+ +++ LK + RVE I +E ++ Sbjct: 681 SESGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAH 740 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L+ + ++A + ++ + +VD L+ ++D ++++ S +I+ Sbjct: 741 RENDSLKSKLSHLKMKEIVNNTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAVIV 800 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + K ++ VT D + +A + + A + GGGG GGRP MAQ+G + K Sbjct: 801 LASAV-DGKVAISCGVTPDYVKQGVHAGKIVKEVATICGGGG-GGRPDMAQAGAKDATKI 858 Query: 886 DQAIAGVASFLK 897 ++A+ V +LK Sbjct: 859 EEALKNVDEWLK 870 >gi|154174082|ref|YP_001408546.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92] gi|205830012|sp|A7GZA4|SYA_CAMC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|112803074|gb|EAU00418.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92] Length = 852 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 359/901 (39%), Positives = 520/901 (57%), Gaps = 57/901 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M N+ +R +L FF+ GHE+ PS+ L+P ND TL+FTN+GMVPFK+IFTG+ Sbjct: 1 MQNL-DVREAYLNFFKSKGHEITPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58 Query: 61 V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 + T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 59 IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLK 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY+TV++ D+EAF+LW + ++ D+I R +DNFW M +TGPCGPCSEIF+DQ Sbjct: 119 LPVDRLYVTVHESDDEAFELWAR--HIARDRIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G E +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +++ Sbjct: 177 GGEHFNTPEDYMGGDGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAIME 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K +NYD LF LI ++ G Y ++ ++RVI DH+RS +FL+A G EGRG Sbjct: 237 GKFSNYDSSLFMPLIDEVAKLCGKPYSYDSGASYRVISDHIRSVTFLLAQGTTFDKEGRG 296 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG EP M L+ +C MG Y L + K ++E +R E+ERF Sbjct: 297 YVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCEMMGGHYTYLNEKKAAVKEQVRLEEERF 356 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+ GL L + L+ EI +G+ AFKLYDT+G PLD+ D+L +GL +D F Sbjct: 357 LATIASGLELFNEELAKT--KEIFSGETAFKLYDTYGFPLDLTADMLREKGLK-VDEAKF 413 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ + EQ++RA+A G G +++ + L E++G +F GYD L Sbjct: 414 DELMSEQKARAKAAWKGSGDKSSKGDFKQLLEEFGENKFSGYDELER------------- 460 Query: 479 KPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + A++ + V+ +G+ V+FD TPFYA++GGQ GDTG G Sbjct: 461 ----------QSKILALLDNDFKRVQNLRAGESGWVMFDVTPFYAQSGGQTGDTGEITGV 510 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G L ++ + VE G ++ R +++ +HSATHLLH AL Sbjct: 511 GKVLDTQKFHG------LNLSQVEVGKQIKTGDVLNLKVSDARAEIARHHSATHLLHAAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ILG+HV+Q GS + D LRFD +H K +TS EL+ IE VND +A + T IM+ E Sbjct: 565 RKILGTHVAQAGSNVEADRLRFDFSHPKALTSEELEMIEKFVNDAVASSAAAKTEIMDIE 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A SGA AL G KY + VRV+S+ G S LCGGTHV + EI +I ES + Sbjct: 625 AAKNSGAIALFGEKYAENVRVLSL-----GNVSKELCGGTHVKNVSEIGAFFITKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+ + A + G +L +++ LK ++ V ++++ E R+L+ K Sbjct: 680 AGVRRIEAVCSRAALNLARGFRSELAEISNELKTNEPMVA--IKKLKGEVRELK---DKL 734 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 K + ++ I D ++ S ++K+++D + + S I+L+ + + K + Sbjct: 735 KNIGDSHAIAFTSINDTKMGVAVVK---SGDIKTMIDNYKNEFASLAILLLQV-NDDKIA 790 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + V A + +++AK+L G GGGR A +GG N + A+ F K Sbjct: 791 IAAGVKNAP---IKAGEWVKMAAKIL-DGNGGGRDDFATAGGKNVPMIETAVKEAFEFAK 846 Query: 898 K 898 + Sbjct: 847 E 847 >gi|150021161|ref|YP_001306515.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429] gi|205830274|sp|A6LMH9|SYA_THEM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149793682|gb|ABR31130.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429] Length = 859 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 343/906 (37%), Positives = 538/906 (59%), Gaps = 57/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FLEFF+K GH++LPS+SLIP +DP LMFT +GMVPFK IF G+ PVY V Sbjct: 1 MLSEEIRQLFLEFFEKKGHKILPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D++NVGRT RHHTFFEMLGNFSFG YFK AI+ AW+ +T+ + Sbjct: 60 TTCQKCIRT----TDIENVGRTPRHHTFFEMLGNFSFGDYFKREAIEWAWEFVTQVLKIP 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + RL+I+VY+EDEEA+ +W+K G+S++KI+++ DNFW TGPCGP +EIF+D G Sbjct: 116 EERLWISVYEEDEEAYDIWRK-IGVSSNKIVKLGKEDNFWGPAGPTGPCGPDTEIFYDTG 174 Query: 181 ECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 + + G P R++EIWNLVF ++ Q + L + +IDTG GLER+A ++ Sbjct: 175 KEVPITDGKEPNPGNTEGRFVEIWNLVFTEYYQDENGQLLPLKRKNIDTGAGLERIAAMM 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N+D DLF +I V ++Y + + V+ RVI DH+R+ FLI+DG+ P+NE Sbjct: 235 QGVYYNFDTDLFLPIINRITDVLNVEYGRDEKHDVSIRVIADHIRALVFLISDGVFPSNE 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRRI+RRA + ++LG +P + +++ A+ +MG YPE+++ + ++E + E+ Sbjct: 295 GRGYILRRILRRAARHGKMLGSEKPFLHNIVDAVVEKMGKIYPEIVEKQSFVKEIIYGEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF + L++GL ++D ++ G ++G+ AFKLYDT+G PLDI++D+ G +D Sbjct: 355 ERFLQNLNKGLDIVDKIVKETGGK--IDGEAAFKLYDTYGFPLDILRDLANENGYI-LDE 411 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ +E+QR +AR G + + +L +T+F+GYD+L Sbjct: 412 EGFNKYMEQQRKKAREA-AGEVEFSERTDYETL---DISTKFVGYDVL------------ 455 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ V I + + V+E + E++ D+TPFY E GGQ+ D G Sbjct: 456 -----------STNARVLKIRTE-KFVDEVKDVE-CELILDETPFYPEKGGQVADKGVIK 502 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G +T+V EGI V H +G +R ++ ++D + R+ + NH+ATHLLH Sbjct: 503 GKNGEFVVTNVYVPVEGIIV-HKGKLKGKIRVGDAIFASVDEKKRKATARNHTATHLLHA 561 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + P+ LRFD TH +T E++ IE VN+ I + + V T++M+ Sbjct: 562 ALRKVLGTHVRQAGSLVAPERLRFDFTHYAALTKEEIEKIEKMVNEKILEAIDVNTKVMS 621 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++AI +GA AL KY D+VRVV + S LCGGTHV +TGEI L I+SESS Sbjct: 622 YDEAIKNGAMALFEEKYGDKVRVVRIR-----DFSEELCGGTHVKNTGEIGLFKIISESS 676 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEAITG + ++L + K + L + NV ++E++ E ++L+L Sbjct: 677 VSAGVRRIEAITGFASLTYLENLETNWKKIKEELDATDENVFVKIEKLKEGIKQLELKIK 736 Query: 776 KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + + + + + ++ ++ + V+ L+ + D L + ++ + Sbjct: 737 EIQKNMINIKQILNNVQIENEIKYLVYEFEGVEQNTLRDLADKLIDRGVDLVVFF--NKQ 794 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K +++ + ++ +A ++A+ +K+L GGGGGRP AQ+GG + +K ++A + + Sbjct: 795 GDKVILIVKR-KKTFEKLHAGNIAKSLSKIL-DGGGGGRPDFAQAGGKDVSKINEAKSKL 852 Query: 893 ASFLKK 898 L++ Sbjct: 853 IEILRE 858 >gi|194333146|ref|YP_002015006.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271] gi|194310964|gb|ACF45359.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271] Length = 885 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 340/922 (36%), Positives = 496/922 (53%), Gaps = 67/922 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR +FL++F GH+++ S+ +IP DPTL+FTN+GM FK++F + Y Sbjct: 1 MNSRDIRQSFLDYFSAKGHKIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L Sbjct: 61 VDTQKCMRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTDVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +DEE+F +W++ + + D I++ DNFW M ETGPCGPCSEI D + Sbjct: 121 KDRLYATVYKDDEESFLIWQQETDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTD 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + R IE+WNLVF+Q+ + LPK +DTGMG ER+ VLQ K Sbjct: 181 D-SSGAPLVNAGDYRVIELWNLVFIQYNRMADGSLDPLPKKHVDTGMGFERVTAVLQGKR 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F L +A +VTG+ Y + RVI DH R+ +F I DG +P NEGR Sbjct: 240 SNYDTDIFYPLFEAITEVTGVTYNASLDGEQDIAMRVIADHARALTFAITDGAMPGNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ YAR L EP++ L+ + MG +PEL Q + +++ ++SE+E Sbjct: 300 GYVLRRILRRALRYARKLDSREPMIYKLVGVIARTMGDVFPELQQQQETVQKIVKSEEES 359 Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + + + G+ AF+LYDT+G P+D+ + + GL ID Sbjct: 360 FLSTLDRGMEIFGDITKAVKADNGKEIKGEDAFRLYDTYGFPIDLTRLMAAEVGL-DIDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ ++EQ++RAR +E + E T F+GY+ L + + V Sbjct: 419 KGFDVCMQEQKTRARMDRKEKQLAASETGEWLWLETPSPTVFVGYETLESDARIVGVKVV 478 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 G ++++V D+TPFYAE+GGQ GD G Sbjct: 479 --------------------------------GDQLQLVLDRTPFYAESGGQTGDRGVIE 506 Query: 536 GDGIRLQITDVQKKAEGIFV-------HHAIVERGILRTEMS----LVLTIDYQNRRQLS 584 +G +++ D QK + H + + S + +++D Q+R Sbjct: 507 AEGYSVEVVDTQKDGDMTVHIAATVQDRHTGEQIDPAAIDFSASVAVQVSVDRQSRLATE 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS + PD LRFD +H + +++ EL+ +E VN+ I Sbjct: 567 RNHTATHLLHAALRKVLGKHVQQKGSLVGPDRLRFDFSHFEKVSARELQLVEAEVNERIR 626 Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + +V + E+A+ GA A G KY D VRVV V S LCGGTHVS+ G Sbjct: 627 EAGELVKHADIPYEEALEKGALAFFGDKYADLVRVVEVPG-----VSIELCGGTHVSNVG 681 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762 I L IVSESS+ AGIRRIEA+TG+ A L + ++L+ + LK V +V+ Sbjct: 682 RIGLFKIVSESSVAAGIRRIEALTGKAAEELLWNEYQELQQIRQLLKAHPDEGVAVKVQA 741 Query: 763 IWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE + L +L + + S +I + + + + +LKS+ L Sbjct: 742 LLEEKKTLGKQVQDMQLSVLLDKALQQLDSSEEINGCRIFTMHVPDAGADDLKSLGQYLH 801 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I G +L S E K S++ + NA DL + +A+ + GGG GG+P A Sbjct: 802 DRIGCGAGLLASES-EGKVSLVAFAGPQAVRQCGVNAGDLVKKAAQEVQGGG-GGKPGFA 859 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 +GG N +A + L+ Sbjct: 860 TAGGRNPAGLTKAFETFTAALQ 881 >gi|293374254|ref|ZP_06620582.1| alanine--tRNA ligase [Turicibacter sanguinis PC909] gi|292647087|gb|EFF65069.1| alanine--tRNA ligase [Turicibacter sanguinis PC909] Length = 873 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 337/912 (36%), Positives = 511/912 (56%), Gaps = 61/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L FF+ GH + P + L+P NDP+L++ NSG+ K F G+E P + Sbjct: 4 MTGSEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E A+ W+LLT + F Sbjct: 64 TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D+ LY+TVY D+E + LW K+ G+S D I+++ NFW + E GPCGP +EIF+D+ Sbjct: 120 FDKELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEY--NFWEIGE-GPCGPNTEIFYDR 175 Query: 180 G-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231 G E I L E +RYIEIWN+VF Q+ + E +LP +IDTGMGLE Sbjct: 176 GTKYDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA V+Q N+D DLF +I+A+E+++G+KY +VI DH+R+ +F +ADG L Sbjct: 236 RMACVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGAL 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +NEGRGYVLRR++RRA+ Y + LG M L+P + M YP + L+++ + Sbjct: 296 LSNEGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVI 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +SE++RF +TL G +L +++ D+ ++G AF LYDT+G P ++ + G Sbjct: 356 KSEEDRFRQTLADGEKILTDLIAKCE-DKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ +E QR RAR + S ++ +L ++F+GY L Sbjct: 415 -VDKEGFDAQMEVQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +S V ++Q GE+V+ +V+ D TPFYAE+GGQ+ DT Sbjct: 464 ---------------STTSNVILLLQNGEVVDSLTG--AGQVILDTTPFYAESGGQVADT 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TDV K G + H++ G L +V + +NR L+ NH+ATH Sbjct: 507 GMMTTSAANVMVTDVIKAPNGQHL-HSVQVDGTLSLNDEVVCQVQVENRLDLTKNHTATH 565 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE VN+ I ++PV Sbjct: 566 LLHQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEV 625 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A GA AL KY + VRVV G +S LCGG HVS+T EI L I+ Sbjct: 626 FEKSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKII 680 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TG+ A ++ E+ +++ LK + RVE I +E ++ Sbjct: 681 SESGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAH 740 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L+ + ++A + ++ + +VD L+ ++D ++++ S +I+ Sbjct: 741 RENDSLKSKLSHLKMKEIVNNTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAVIV 800 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + K ++ VT D + +A + + A + GGGG GGRP MAQ+G + K Sbjct: 801 LASAV-DGKVAISCGVTPDYVKQGVHAGKIVKEVATICGGGG-GGRPDMAQAGAKDATKI 858 Query: 886 DQAIAGVASFLK 897 ++A+ V +LK Sbjct: 859 EEALKNVDEWLK 870 >gi|157412393|ref|YP_001483259.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215] gi|205830179|sp|A8G242|SYA_PROM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157386968|gb|ABV49673.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215] Length = 886 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 310/908 (34%), Positives = 507/908 (55%), Gaps = 52/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL+F+ + H+++PS+SL+P +DPT+M T +GM+PFK +F G ++ + T Sbjct: 11 TGDEIRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+TK + L Sbjct: 70 SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSS 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++++ EDEE+ K+W + G++ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 126 ENIIVSIFHEDEESEKIWIEEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNPE 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+G+R+IE +NLVFMQ + + + L +IDTGMGLERMA +LQ+K+N Sbjct: 186 -KGLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +IQ + +++ + Y ++ + +++ DH R+ LI+DG+ +N GRGY Sbjct: 245 NYETDLIFPIIQKASKISSINYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG + + + M + YP+L LI ++ E+ RF Sbjct: 305 ILRRLLRRMVRHGRLLGIKKEFLSDIASVGIKLMENNYPDLKNNNELILSEIKIEEVRFR 364 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LLD ++S ++++G AF+LYDT+G PL++ ++I + +DI F Sbjct: 365 ETLERGEKLLDEIISS--GQKLISGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQ 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + ++ Q+ RA+A S + + + + + T F G D L Sbjct: 422 REMDAQKERAKAASSNIDLTLEGSLEREI-DLFNKTIFNGEDCLDS-------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + ++ I +V++A GQ+V++V DQT FY E+GGQ+GD G Sbjct: 467 ---------EAKIQGIFLDSNLVKKASEGQRVQIVLDQTSFYGESGGQVGDNGIICSTDA 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D + + +F+H IV+ GI ++ ++ R + S NH+ATHLL AL Sbjct: 518 EILV-DKVVRKKNVFLHDGIVKNGIFTVGQTIKTVVNPAKRVRASANHTATHLLQSALKE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +VSQ GS + + LRFD SKP++ +++ +E VN I QN P+V + M + +A Sbjct: 577 VVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKREA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA A+ G KY D VRVV V S LCGGTHV +T E+ I+SE I AG Sbjct: 637 LEKGALAMFGEKYGDEVRVVDVPG-----VSMELCGGTHVKNTSELGCFKIISEEGISAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA++GQ A + ++ + L+ LK + + RV + E K K Sbjct: 692 VRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSELINKNKEIQKMKD 751 Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831 ++ S + + + + I +D L+S L ++ + ++++G Sbjct: 752 EIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVILGGIPNP 811 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + +K ++ + ++ + +A L A++ GG GGG+P+ AQ+G + +K D A+ Sbjct: 812 ENRKLLFVVSLGDEAVKIGLHAGKLINEIARICAGG-GGGKPNFAQAGARDIDKLDFALD 870 Query: 891 GVASFLKK 898 + L+K Sbjct: 871 YAKNHLQK 878 >gi|154497721|ref|ZP_02036099.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC 29799] gi|150273219|gb|EDN00364.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC 29799] Length = 890 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 330/915 (36%), Positives = 505/915 (55%), Gaps = 56/915 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP ND +L+ NSGM P K FTG+++P VTT Sbjct: 8 LNELREMFLKFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPCHRVTT 67 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKC+R G D++N+G T RH T+FEMLGNFSFG YFK+ AI AW+ LT + LD Sbjct: 68 CQKCIRTG----DIENIGHTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSPEWVGLD 123 Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY +V+ D+EAF++W + G+ A++I + DNFW +GPCGPCSEI Sbjct: 124 PERLYPSVFAGNETTPADDEAFRIWHEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 182 Query: 176 FFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 ++D+GE G PG + +RYIE+WN+VF QF + L + +IDTGMGLER+ Sbjct: 183 YYDRGERWGCGKPGCTVGCDCDRYIEVWNVVFSQFNNDGENHYTELKQKNIDTGMGLERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A V Q+ + +D+D ++ ++T Y V+ RVI DH+RS++F+I DG+L Sbjct: 243 ACVCQDVASLFDVDTVMNITNKVSEITHAHYGETAAKDVSLRVITDHIRSATFMICDGVL 302 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA + +LLG EP + + + E YPEL + + I + + Sbjct: 303 PSNEGRGYVLRRLLRRAARHGKLLGVNEPFLYEVCDTVIHENEGHYPELRERQDYITKVI 362 Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 R+E+E F +T+D GL + + +LS +++ +G AFKLYDT+G P+D+ +++ +G Sbjct: 363 RTEEENFARTIDGGLKIFNDMLSGHKEKGEKVFSGADAFKLYDTYGFPIDLTIEMVQEQG 422 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F +EEQ+ RAR LG + + TQF+GYD Sbjct: 423 MT-VDQEGFKVLMEEQKVRARKAREALGDLGWAGV--EFGKDVPETQFVGYDHTSIDD-- 477 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V A+V + E EE + G + VV D+TPFYAE GGQ+ Sbjct: 478 --------------------AKVVALVVENEQAEELMPGVEAIVVLDKTPFYAEMGGQVA 517 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + Q+TDVQK G ++H + G+++ ++ +ID + R+ + HSA Sbjct: 518 DHGVITMGDAQFQVTDVQKNKGGKYMHTGKLTGGVIKLGDTVSASIDVKRRKAIMRAHSA 577 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL T+LG HV Q GS + D LRFD TH +T+ EL + VN+ + + V Sbjct: 578 THLLDKALRTVLGDHVQQAGSLVEEDRLRFDFTHFSAMTAEELSQVSAMVNEAVLEGYDV 637 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T ++ E+A GA AL G KY D VRVV + +S CGGTH+ +T ++ + + Sbjct: 638 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDMGE----GYSVEFCGGTHLDNTAKVGVFH 693 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SE S+ +G+RRIEA TG ++ + +KL A+ LK + + E+ E R+ Sbjct: 694 IESEFSVASGVRRIEATTGAQSLKIMNQNQQKLFEAAAVLKAKPSELREKAEQTIAELRE 753 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ + K K + + H + D+ ++ + D+ +L+ + D L+ K + + Sbjct: 754 LRHMVEKFKAKEAAGETERFLMGGHTVGDLKVLTATLPNADAAKLRQMGDMLRDKQPN-V 812 Query: 825 IMLVGISKEKKASV-LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + ++ + K + ++ E + A D+ + + GG GGG+P A GG + Sbjct: 813 VAVLSAVNDGKITFQVVCGKEAVAKGIKAGDIIKNVTAIC-GGKGGGKPDSAMGGGFDVL 871 Query: 884 KADQAIAGVASFLKK 898 K D A+A V + + Sbjct: 872 KLDDALAKVDDLVAE 886 >gi|124024525|ref|YP_001018832.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303] gi|123964811|gb|ABM79567.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str. MIT 9303] Length = 930 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 330/913 (36%), Positives = 504/913 (55%), Gaps = 56/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IRT FL FF + H+++PS+SL+P DPT++ T +GM+PFK +F GQ + T Sbjct: 54 TGSEIRTAFLTFFAERAHQVIPSASLVPE-DPTVLLTIAGMLPFKPVFMGQAERPAPRAT 112 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ Sbjct: 113 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNP 168 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 169 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPD 228 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R++E +NLVFMQ+ + + L +IDTGMGLERMA +LQ N Sbjct: 229 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 287 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ D+ LI+ + + G+ Y+ + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 288 NYETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 347 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 ++RR++RR + + RL+G +P + + A M AYP+L + + LI L E+ RF Sbjct: 348 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 407 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG +L VL + ++++G AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 408 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 464 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+++QR RA+A ++ + T + + + AT+F GY +L Sbjct: 465 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFKGYQVLEQPCC----------- 512 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 V A+V GE E A +G V++V D TPFY E+GGQ+GD G G+ Sbjct: 513 ------------VLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGEGS 560 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + D + +FVH +ERG L + +D RR+ NH+ATHLL Sbjct: 561 GGNGVIVAVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 620 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ S + Q GS + D LRFD S+ +T+ EL+ IE +N I ++ ++ M+ Sbjct: 621 ALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVEEMS 680 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A+GA A+ G KY D V D S LCGGTHV++T EI L IV+ESS Sbjct: 681 IQEAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESS 735 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G ++L +D +K L K ++ RV + EE + Q Sbjct: 736 VAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQKALT 795 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L V + + + + + V+ L++ L ++ +++G Sbjct: 796 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDATAVVLGG 855 Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 S E K ++ + ++ A AK GGGG GGRP++AQ+GG +G Sbjct: 856 LPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGG-GGRPNLAQAGGRDGAAL 914 Query: 886 DQAIAGVASFLKK 898 D A+ LK+ Sbjct: 915 DGALEAAKVELKQ 927 >gi|205830259|sp|A2CDK7|SYA_PROM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 330/913 (36%), Positives = 504/913 (55%), Gaps = 56/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IRT FL FF + H+++PS+SL+P DPT++ T +GM+PFK +F GQ + T Sbjct: 16 TGSEIRTAFLTFFAERAHQVIPSASLVPE-DPTVLLTIAGMLPFKPVFMGQAERPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPD 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R++E +NLVFMQ+ + + L +IDTGMGLERMA +LQ N Sbjct: 191 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ D+ LI+ + + G+ Y+ + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 ++RR++RR + + RL+G +P + + A M AYP+L + + LI L E+ RF Sbjct: 310 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG +L VL + ++++G AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 370 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+++QR RA+A ++ + T + + + AT+F GY +L Sbjct: 427 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFKGYQVLEQPCC----------- 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 V A+V GE E A +G V++V D TPFY E+GGQ+GD G G+ Sbjct: 475 ------------VLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGEGS 522 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + D + +FVH +ERG L + +D RR+ NH+ATHLL Sbjct: 523 GGNGVIVAVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ S + Q GS + D LRFD S+ +T+ EL+ IE +N I ++ ++ M+ Sbjct: 583 ALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVEEMS 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A+GA A+ G KY D V D S LCGGTHV++T EI L IV+ESS Sbjct: 643 IQEAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESS 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G ++L +D +K L K ++ RV + EE + Q Sbjct: 698 VAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQKALT 757 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L V + + + + + V+ L++ L ++ +++G Sbjct: 758 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDATAVVLGG 817 Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 S E K ++ + ++ A AK GGGG GGRP++AQ+GG +G Sbjct: 818 LPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGG-GGRPNLAQAGGRDGAAL 876 Query: 886 DQAIAGVASFLKK 898 D A+ LK+ Sbjct: 877 DGALEAAKVELKQ 889 >gi|320109036|ref|YP_004184626.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4] gi|319927557|gb|ADV84632.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4] Length = 889 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 338/913 (37%), Positives = 496/913 (54%), Gaps = 72/913 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FL FF+ H + SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 5 SGSQIREDFLRFFETKEHRRVHSSSLVPHNDPTLLFTNAGMNQFKDVFLGAEKRSYVRAA 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F + Sbjct: 65 TSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIAYAWELLTAAEWFGI 124 Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 D+ +LY+T+++ D+EA + W + +G+ ++I ++ DNFW M ETGPCGPCSE Sbjct: 125 DKSKLYVTIFEGDAQVPRDDEAEQFWIE-AGVPKERIFEMSAKDNFWQMGETGPCGPCSE 183 Query: 175 IFFDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK-----QERFILPKMSIDT 226 I++D G PG + +RY+EIWNLVFMQF++ + LPK SIDT Sbjct: 184 IYYDLGLEAADEPGTDKPFPLDEQRYVEIWNLVFMQFDRMIDAATGGAQLTPLPKPSIDT 243 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGLER+A VLQ T+N++ DLF LI + +++G + ++I DH R+++FLI Sbjct: 244 GMGLERIAAVLQGVTSNFETDLFTPLIAKAAELSGATD--LTSSSLKIIADHARAATFLI 301 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG++P NEGRGYVLR+I+RR + + RLLG +P M ++ A+ EM AYPELI + Sbjct: 302 SDGVIPLNEGRGYVLRKILRRGIRHGRLLGQEQPFMHEMVYAVRDEMQVAYPELIDSAER 361 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + + +E+++F +TL G LS + + + +G AF+LY+T G+PLD M D Sbjct: 362 VAKVVLAEEQQFARTLQLG-------LSQMTNETLSSGAAAFRLYETFGMPLDFMTDAAR 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G D+ F A EE++ RARA G + + L T F+GY LR Sbjct: 415 DAG-IEFDLPGFEAAKEEEQQRARASWRGGSQKSASPAFRELA----KTDFLGYGGLRAD 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V A+V+ G V+ G + EVV D T FYA++GG Sbjct: 470 GV----------------------TVLALVKDGVGVQALHPGDEGEVVLDATSFYADSGG 507 Query: 527 QLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q+GD G L K H +V + + L ++ + R Sbjct: 508 QVGDVGWLYPTDHTGALAEVKGCTKPVQGVFAHKVVVKRDISVGDRLDAVVNGEVRSATI 567 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ THLLH AL +LG+HV Q GS + LRFD +H I +L+ IED VN + Sbjct: 568 RNHTGTHLLHAALREVLGTHVKQAGSLVNSARLRFDFSHFAGIAPEDLQEIEDIVNAQVL 627 Query: 645 QNLPVVTRIMNREDAIASG--AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N V T D A AL G KY D+VRVV + G S+ LCGG H +T Sbjct: 628 GNTRVETFEDVPIDVAVHEFKATALFGEKYGDKVRVVKI-----GDFSTELCGGIHTKAT 682 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV----SQGNVVG 758 GEI LL +V ESS +GIRR+EA+TG + + + + + Sbjct: 683 GEIGLLKLVGESSAASGIRRVEAVTGTGSLKEFRRDFDVARVATQVIGGSSLPPAEALQQ 742 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVM 813 ++ EE +KL+ + +++ + ++ + ++ +S +D +++ ++ Sbjct: 743 KLSAQDEELKKLRRELDQARMKSASSATANAAESAVEVKGIKVLAQRVSGLDRNQMRQLV 802 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D L+ +I G+++L +++ K +++ VT+DL + A + A +GG G GGRP Sbjct: 803 DNLRTQIGEGVVVLGMATEDGKVALIAGVTKDLTSKVQAGKVVGALAAKVGGKG-GGRPD 861 Query: 874 MAQSGGPNGNKAD 886 +A++GG + ++ D Sbjct: 862 LAEAGGSDPSQLD 874 >gi|57233592|ref|YP_180805.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195] gi|83305845|sp|Q3ZAE4|SYA_DEHE1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57224040|gb|AAW39097.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195] Length = 871 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 340/907 (37%), Positives = 516/907 (56%), Gaps = 47/907 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP Sbjct: 1 MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T+ QKC R D+++VG H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 61 MTSCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQ 179 +L++TVY +D+EA LWK+ G+ +I+R+ DNFW ++GPCGPCSEI +D Sbjct: 116 PAEKLWVTVYLDDDEAIALWKEQ-GVPEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174 Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + G + + R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ ++ Sbjct: 175 GQEMGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q + N Y+ D+F +I+ + Q++G +Y + R++ +H R +FLIADG++P Sbjct: 235 QFRKNVYETDIFAPVIEKACQLSGRQYGIDAETDKALRIVSEHSRGITFLIADGVIPDKA 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + R LG +P ++ + A+ M YPEL + + + E + SE+ Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELNKRQAYVLEMIASEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF +TL GL LL+ ++ +I +G AFKLYDT+G P+++ +I RGL+ +D+ Sbjct: 355 ARFSETLATGLELLEEIVRQTKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDL 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E QR++AR+ T F+GY+L R Sbjct: 413 GGFEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEKTCFVGYELTRQ---------- 462 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + I+ +G V+ G + +V D++PFYAE GGQ+GDTG I Sbjct: 463 -------------KSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G R ++ + G+F+H V G L+ + ID + RR ++ NH+ATH+L Sbjct: 510 TGGGRFEVKNTLHLPNGVFLHQGRVISGCLKIAETAAAHIDEERRRDIARNHTATHILQT 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG V Q GS +TP+ LRFD +H KP+T E++ E+ VND I +NLPV M Sbjct: 570 ALRQVLGEQVQQRGSVVTPERLRFDFSHLKPMTKDEIRRAEEFVNDKIRRNLPVYAEEMP 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A+ G AL G KY DRVRV+ V S+ LCGGTHVS++GEI L IVSESS Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIVSESS 686 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+TG+ A +++ Q + L L+ L+ + ++ E+ EE L+ Sbjct: 687 VGAGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESPRKLAELKEEIDTLKKTVQ 746 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + Q++ + + + ++ V++ L D L+ K+ SGII+L + Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLHETADFLRDKLGSGIIVLGTV 806 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S E K L +VT DL+++ ++A ++ + +++ GGGG GG+P+MAQ GG + K D+A+ Sbjct: 807 S-EDKPFFLCMVTPDLIEKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKAKLDEAL 864 Query: 890 AGVASFL 896 V L Sbjct: 865 QAVKGML 871 >gi|223937386|ref|ZP_03629291.1| alanyl-tRNA synthetase [bacterium Ellin514] gi|223893937|gb|EEF60393.1| alanyl-tRNA synthetase [bacterium Ellin514] Length = 908 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 324/952 (34%), Positives = 485/952 (50%), Gaps = 103/952 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 S IR +FL+FF+ H ++PSSSL+P + P L+FTN+GM F IF GQ+K Sbjct: 1 MTSSQIRQSFLDFFKSKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGQKKADVSKW 59 Query: 59 --------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110 QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG YFK+ AI A Sbjct: 60 AGAVPSLDTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKEAIDWA 119 Query: 111 WDLLTKEFDLDQRRLYITVYDE----------DEEAFKLWKKI---SGLSAD-KIIRITT 156 W+L+T+ + + RLY TVY D+EA+ LW +GL I+ Sbjct: 120 WELVTEVWRFPKERLYATVYSPDKSLGDPSDFDQEAYDLWAAKFSAAGLDPKVHIVNGNK 179 Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216 DNFW M +TGPCGPCSE+ D ++ IEIWNLVF+QF Sbjct: 180 KDNFWMMGDTGPCGPCSELHVDLTPQGDTKGALVNKGTAECIEIWNLVFIQFNANPGGTF 239 Query: 217 FILPKMSIDTGMGLERMATVLQEKT----------NNYDIDLFKHLIQASEQVTGMKY-- 264 LP +DTGMG ER+ +++Q +NY+ D+F+ + A E+++G +Y Sbjct: 240 SPLPAKHVDTGMGFERVTSIMQGSHGFKDFANAKISNYETDIFRPIFDAIEKLSGKRYGS 299 Query: 265 ------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312 + V RVI DH+R+ SF IADGI P N R YVLRRI+RRA+ Y Sbjct: 300 TLPKSGSTGDTEQEKVDVAFRVIADHIRTLSFSIADGIQPGNTDRNYVLRRILRRAVKYG 359 Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372 R LG+ EP L+ L MG +PE+ + K +++ +RSE+E F KTLDRG+ L + Sbjct: 360 RTLGFHEPFFYKLVDVLAETMGQVFPEIRERKQHVKDVIRSEEEAFNKTLDRGIELFNQE 419 Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432 ++H+ L G AFKLYDT+G PLD+ + + RGL +D+ FN ++EQ+ R++A Sbjct: 420 IAHVKPGHQLQGPFAFKLYDTYGFPLDLTELMARERGL-AVDVAGFNLLMDEQKKRSQAA 478 Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492 E I S E T+FIG+D L+ Sbjct: 479 QKK------EVISLSQIETTVPTKFIGFDQLQAKT------------------------- 507 Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552 +++E K VV D + YAE GGQ+GDTG G ++ + QK Sbjct: 508 -------KVLEVVGLKDKTAVVLDTSSAYAEMGGQVGDTGELSQGGKLWRVENTQKSGNT 560 Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 A + +T + LT+D + R + +H+ TH+LH A+ ++ SQ GS + Sbjct: 561 WLHFLADGDA--PQTGSEVELTVDRERRNAIQRHHTVTHILHWAIHEVVSREASQKGSFV 618 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTK 671 PD L FD S+P+T ++ +E VN+ I +N T +++ + G K Sbjct: 619 GPDKLTFDFN-SQPLTPQQVADVEKLVNERILENAGVSWTEVLHADVKGRKDVMQFFGDK 677 Query: 672 YNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 Y DRVRVV + + G +S LCGGTH TGEI L I+ ES++ AG+RRIEA+ G Sbjct: 678 YGDRVRVVQIGGKAGELNGYSMELCGGTHTQGTGEIGLFRIIGESAVAAGVRRIEAVAGL 737 Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLS 787 A + + +KS+A + G + +++ + + ++L+ +K N Sbjct: 738 EAYGKATDEIQLIKSIAGKVNAPIGELEKKIDALLAQQKELERQLKAVNQKEAANTAKSL 797 Query: 788 CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844 K A +N + II + D L+S+ DAL+ + + G+++L G + +++ V+ Sbjct: 798 IGKAATLNGIPAIIENLGSADGDTLQSIADALKGQFK-GVVVLGGAAN-GAVALVASVSP 855 Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + A + + A ++ GG GGG+P A+ GG + +K D+A+A + Sbjct: 856 EFTAKVQAGKIIQGIAPIV-GGKGGGKPDNARGGGKDVSKLDEAMAKAKGLI 906 >gi|257878215|ref|ZP_05657868.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257881004|ref|ZP_05660657.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257889586|ref|ZP_05669239.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|260559260|ref|ZP_05831446.1| alanyl-tRNA synthetase [Enterococcus faecium C68] gi|293559338|ref|ZP_06675880.1| alanyl-tRNA synthetase [Enterococcus faecium E1162] gi|294622256|ref|ZP_06701310.1| alanyl-tRNA synthetase [Enterococcus faecium U0317] gi|314939752|ref|ZP_07846974.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|314941747|ref|ZP_07848624.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|314948292|ref|ZP_07851684.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082] gi|314952380|ref|ZP_07855387.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|314992001|ref|ZP_07857454.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|314995701|ref|ZP_07860791.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|257812443|gb|EEV41201.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257816662|gb|EEV43990.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257825946|gb|EEV52572.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|260075017|gb|EEW63333.1| alanyl-tRNA synthetase [Enterococcus faecium C68] gi|291598227|gb|EFF29322.1| alanyl-tRNA synthetase [Enterococcus faecium U0317] gi|291606702|gb|EFF36094.1| alanyl-tRNA synthetase [Enterococcus faecium E1162] gi|313590092|gb|EFR68937.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|313593436|gb|EFR72281.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|313595497|gb|EFR74342.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|313599425|gb|EFR78268.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|313640981|gb|EFS05561.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|313645273|gb|EFS09853.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082] Length = 880 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 340/920 (36%), Positives = 503/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ + N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ ++ + Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879 >gi|206602304|gb|EDZ38785.1| Alanyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG'] Length = 891 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 360/909 (39%), Positives = 517/909 (56%), Gaps = 47/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N +R FL +F +GH+++PS+SLIP DPTL+FTN+GMVPFK+IF G EK + Sbjct: 1 MNSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI AW LTKE +D Sbjct: 61 VSIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +R L++TVY ED+EA +LW++++ + D+I+R+ DNFW M +TGPCGPCSEI DQGE Sbjct: 121 RRLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVFMQ+++ ++ LP+ SIDTGMGLER++ V+Q+ Sbjct: 181 RFSCGSPDCKVGCDCDRYLEIWNLVFMQYDRNSEGVLSPLPRPSIDTGMGLERLSAVIQK 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296 K +NY+ DLF LI+ E + + Y +RV+ DHLRSS FL+ +GI P+NEG Sbjct: 241 KDSNYETDLFMPLIRTIETYSRVPYGAGEGSLDHAYRVMADHLRSSVFLLHEGIAPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RG+VLRRI+RRA+ + R LG P++ L ++ M YPEL + L I++ LR E+ Sbjct: 301 RGHVLRRIIRRALLFGRELGLPHPILPALADSVAEMMAKPYPELRTSLLRIQDVLRLEEG 360 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL+ GL L+ +L L ++++ G++ F L+DTHG PLDI++D +G +D Sbjct: 361 RFHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQG-ILLD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + +EEQR R R+ +G E S + +F GY+ Sbjct: 420 YKGFEEKMEEQRERGRSSW----TGKKEDFPLSSDRLKESVEFQGYEKT----------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V +++ E V+E +G+ V VV D+T FY E GGQ+GD G Sbjct: 465 ------------SLQGTVLFLLKGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDL 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 IG +++ +K G V V G + ++ +D + R+ +H+ATHLLH Sbjct: 513 IGPFGYIRVRGAKKPYPGWIVLAGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLH 572 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LG V Q GS + P+ LRFD T +P++ L ++E VN I +N PV R M Sbjct: 573 AALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDAREM 632 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A+ GA A KY DRVRVV V S LCGGTHV STG+I L I+ E+ Sbjct: 633 EKSKALDMGALAFFDEKYGDRVRVVQVPG-----TSVELCGGTHVRSTGQIGSLLILQET 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AGIRRIEA+ G A + ++LK L L+ ++ + I E Q Sbjct: 688 GVAAGIRRIEAVAGPLAYQKAVTWRQELKGLRELLEAGTSSLEEKTRTILRENAAYQKEI 747 Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K L+ ++ +S DS+EL++ MDA++ KI SG I+L+G Sbjct: 748 QSLKSRLFSLEEKHSRKEMLEVDGHQLAVIHVSLEDSRELRARMDAIKSKIPSGAILLIG 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + L + DL + F + A + GG GGG+P A+ GGP + + Sbjct: 808 ETTD-KLAFLGWTSPDLGEAFPISQWVKTLAAEV-GGKGGGKPSWAEGGGPKPDDVGSFL 865 Query: 890 AGVASFLKK 898 + +++ Sbjct: 866 QSAKTRMEE 874 >gi|169824323|ref|YP_001691934.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328] gi|205830092|sp|B0S104|SYA_FINM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167831128|dbj|BAG08044.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328] Length = 873 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 326/909 (35%), Positives = 513/909 (56%), Gaps = 53/909 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N ++ IR FL++F + GH ++ S LIP +D +L+ N+GM P K FTG++K Sbjct: 1 MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK AI AWD LT E Sbjct: 61 DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + L+++VY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175 Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +G +EGER++E+WNLVF QF + + + +IDTGMGLER+ VL Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 + N ++I L K +I+ E+++G+KY N V+ R+I DH+R+ +FLI DG++P+NE Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RGYVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+ Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ++F +TLD GL +LD +L ++ +G+ AFKLYDT+G P+D+ ++++ +D Sbjct: 356 KKFQETLDLGLNILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + F + +EEQ+ RAR G + + E+ T+F GY+ L+ Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EELPETKFDGYNSLKD---------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V I + E +GQ +V D T FY E GGQ+GD G Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV+Q GS + + LRFD+TH + ++ +L+ +E VND IA +PV M+ Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E++ + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SESS Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG+ +L +D + ++ LK ++ + R+E EE + L+ Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDRLIDNVKHSLKASNEDEITRRIEMNTEEIKGLKKKL 741 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + ++ ++ + +S +D+ + + ++ K++ G+++L Sbjct: 742 KDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDGVVILAN 801 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + +K D+A Sbjct: 802 -SDESKVSFIALVTDSSVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859 Query: 889 IAGVASFLK 897 + +K Sbjct: 860 LQKGIETVK 868 >gi|163790359|ref|ZP_02184791.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7] gi|159874430|gb|EDP68502.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7] Length = 882 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 342/916 (37%), Positives = 510/916 (55%), Gaps = 60/916 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R FL+FF+ GH++ PS+SL+P DPTL++ NSG+ K F G P +T Sbjct: 5 SSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVVPENPRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120 QK +R ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT+ L Sbjct: 65 NAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEEKWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +LY+TVY ED +A +WK+ GL+ D I I DNFW + GP GP SEIF+D+G Sbjct: 121 DPEKLYVTVYPEDTDAKMIWKEKIGLTDDHI--IDVADNFWDIG-AGPSGPDSEIFYDRG 177 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E E R++EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 178 EAFNDLAENDPENYPGGENERWLEIWNLVFSEFNHKRDGTYEPLPNKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I+ + ++G+K G N ++ +VI DH+R+ SF I DG LP Sbjct: 238 ILQDAPTNFETDLFMPIIEKVQALSGIKKYGENATDDISFKVIADHVRAVSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG + M L+P + M S YPE+++ + I + ++ Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDKAFMFKLVPVVGNIMNSHYPEILEQEEFIVKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ +S L + + + G FKLYDT+G P+++ ++ G Sbjct: 358 NEEERFHETINDGLTILNERISELKVNGEKTIAGSDIFKLYDTYGFPVELTEEFAQDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F + QR RARA G S + F+ + F+GY+ Sbjct: 418 E-VDHEGFEIEMTAQRDRARAARSGEKSMGIQTKLFAGLND--ESLFVGYNKTTAM---- 470 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 I+ I +V A +G++V ++FDQTPFYAE GGQ+ D Sbjct: 471 -------------------GILAVIATDEALVTTAKTGEQVRLIFDQTPFYAEMGGQIAD 511 Query: 531 TGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G ++ KKA H + L + L +D R +++ NH+A Sbjct: 512 KGIIKDTTGKIVAKVTDVKKAPAGQPLHTVEVLESLTVGETYKLEVDETLRNKITRNHTA 571 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG H +Q GS +T + LRFD TH IT EL +E VN+ I ++LPV Sbjct: 572 THLLHQALKDILGEHANQAGSLVTQNHLRFDFTHFGQITQKELNEMEQIVNEKIWESLPV 631 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 VT A GA AL G KY D VRVV+V G +S LCGG HVS+T EI + Sbjct: 632 VTVETEIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEIGIFK 686 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYR 768 I+SES I AG+RRIEA+T + A + L + ++L ++A +K Q +VV +V+++ E + Sbjct: 687 IISESGIGAGVRRIEAVTSEAAYNLLQTEQKRLNAVADLVKAQQTQDVVTKVQQLQTELK 746 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +LQ + + +L + + ++ + +S + D +L+ + D ++K S Sbjct: 747 ELQKENESLQAKLASDQAGDIFKNVQEVNGITVVSAEVDVNDMNQLRQLADQWKQKAVSN 806 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 ++ L G SK+ K ++L V + + + F A DL + A ++GGGG GGRP MAQ+GG N Sbjct: 807 VLTL-GFSKDGKVNLLTAVDDATIKKGFKAGDLIKTIAPLVGGGG-GGRPDMAQAGGKNP 864 Query: 883 NKADQAIAGVASFLKK 898 A+A V ++ + Sbjct: 865 AGLQDALAKVTEWVNE 880 >gi|167771374|ref|ZP_02443427.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM 17241] gi|167666014|gb|EDS10144.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM 17241] Length = 926 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 318/910 (34%), Positives = 495/910 (54%), Gaps = 53/910 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDP-TLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R FL FF+ H LPS L+P D +L+ NSGM P K F G E P + VT Sbjct: 52 LNELREKFLSFFESKEHLRLPSFPLMPSADEASLLLINSGMAPMKKWFLGLETPPRRRVT 111 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D++NVG+T RH T+FEMLGNFSFG YFK A AW+ +TK ++ Sbjct: 112 TCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEFITKALEMPV 167 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+++VY++D+EA ++W K G+ +I+R+ DNFW + +GPCGPCSEI+FD+GE Sbjct: 168 DRLWVSVYEDDDEAEQIWTKEVGVDPSRIVRLGKEDNFWEIG-SGPCGPCSEIYFDRGEQ 226 Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P + +RY+E WNLVF QF+ + +IDTGMGLER+A ++Q Sbjct: 227 YGCGKPTCGVGCDCDRYVEFWNLVFSQFDGDGNGHYERMEHPNIDTGMGLERLACIMQGV 286 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N +++D +++++ ++ G++Y + V+ RVI DH+RS++F+++DGILP NEGRG Sbjct: 287 DNLFEVDTVQNILKHVARIAGVEYHTDAKTDVSLRVITDHIRSTTFMVSDGILPQNEGRG 346 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG EP + + + E +AYPEL++ + I + ++ E+ERF Sbjct: 347 YVLRRLLRRAARHGRLLGIHEPFLYQVCETVIQENANAYPELVEHRDYITKVIKVEEERF 406 Query: 359 GKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +T+D+G+ LL ++ + + I+ G AF+LYDT+G P+D++++IL R + +D Sbjct: 407 ARTIDQGMELLTAIIDKIDSEMDKKIMPGADAFRLYDTYGFPVDLIREILAERKIK-LDE 465 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + ++ Q+ RAR LG E+ + +G +F+GY + Sbjct: 466 EEFARQMQAQKQRAREARAALGDLGWEEDVLADVADHG--RFVGYTEM------------ 511 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + AI++ + V+E G+ +V D TPFYAE+GGQ GD+G Sbjct: 512 -----------AAQAHIVAIIKDDKRVDELHDGELGSIVLDVTPFYAESGGQAGDSGLIS 560 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G + D +K G FVH + G L S+ I+ R + NH+A HLL Sbjct: 561 AGGNVFAVYDCKKSKTGHFVHIGELTAGTLAVGDSVSAAINVDRRADIMRNHTACHLLQA 620 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q G+ RFD +H +T ELK +E+ VN ++ ++ V M Sbjct: 621 ALRQVLGDHVHQAGAFYDDTICRFDFSHFSAVTPEELKRVEELVNRVVLASIDVSVSEMP 680 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A GA AL G KY D VRV SV S LCGGTH+ +T ++ L IV ESS Sbjct: 681 IDEAKKLGAMALFGEKYGDVVRVCSVPG-----ESVELCGGTHLKNTAQVGLFRIVKESS 735 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG+ + Q+ ++ A+ LKV + + R E + E R+ + Sbjct: 736 VAAGVRRIEAVTGRNVLRLMDEQETTMEKTAAALKVGNLSELPARAEALNAESREQKRRL 795 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +L LS ++ + S + L+ + D ++ + Sbjct: 796 EAAEAKLAESQLSGVFDNAQQVGGIYIASVAMMGAKIDALRRMGDRVRDSRPDAVCA-FS 854 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S+L+V +D + + +A + + L GG GGGRP A G + D+A Sbjct: 855 TVNDGKGSILVVCGKDAVAKGAHAGKIVKEL-TALCGGSGGGRPDNAMGGTSEIFRIDEA 913 Query: 889 IAGVASFLKK 898 +A + + + K Sbjct: 914 MAQLPAIVGK 923 >gi|305681135|ref|ZP_07403942.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266] gi|305659340|gb|EFM48840.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266] Length = 889 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 317/921 (34%), Positives = 485/921 (52%), Gaps = 61/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MQTHEIRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPID 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + D ++++TVY +D+EA +W+ + G+ A++I R+ DNFWSM GPCGP SE Sbjct: 116 EGGYGFDPEKIWVTVYLDDDEAANIWENVVGIPAERIQRLGMADNFWSMGIPGPCGPSSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+G G G + + RY+EIWNLVFM+ E+ N + LPK +IDTGM Sbjct: 176 IYYDRGPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G+ER+A +LQ N Y+ DL + +I ++++TG Y + + RVI DH R++ +I Sbjct: 235 GVERIACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMII 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I+ +E+ F KTL+ G L + + + ++ + G AF L+DT+G P+D+ ++ Sbjct: 355 IQRVAITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGADAFALHDTYGFPIDLTLEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D F++ + EQR+RA+A S G T+ + T+FIGYD L Sbjct: 415 AAEAGL-QVDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDEL- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V ++ G+ V E +G VEV+ D + FYAEA Sbjct: 473 ----------------------TAQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEA 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G L++ DVQK + ++VH A VE G ++ +D R Sbjct: 511 GGQIGDRGTMTLGDSLLRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL+H AL +LG Q GS P LRFD +++ +T +L+ IE N + Sbjct: 571 QAHSATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T ++A GA AL G Y + VRVV + GG S LCGGTHV+ + + Sbjct: 631 ADWQVNTIETTLDEAKTMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I+ ESSI +G RRIEA +G + +L + + LAS LK V R+ ++ Sbjct: 687 IGPVSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLT 746 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + ++ + + + S H + S ++ + +L+++ ++ Sbjct: 747 TKLKEAEKTIENLRKAELLAQGSRLVARAHLPNGITVASAVLPDGTTAGDLRTLAADVKN 806 Query: 819 KI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + ++G+++L + + K ++ T++ + R NA + + + G GGG+P MA Sbjct: 807 HLAGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMA 865 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q G N + + + + + Sbjct: 866 QGSGSNPDGLPEGLKAASDHI 886 >gi|237752004|ref|ZP_04582484.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430] gi|229376571|gb|EEO26662.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430] Length = 963 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 335/996 (33%), Positives = 508/996 (51%), Gaps = 143/996 (14%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQA 60 IR +LEFF+ GH++ S L+P +D +L+FTN+GMV FK+IFTG+ P + Sbjct: 1 MKTKDIRALYLEFFKSKGHQVYESMPLVP-DDASLLFTNAGMVQFKDIFTGKIPTPKQRR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 60 ATSAQLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKDAIAYAWEFVTEVLGF 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ LY+T+++ D+EAF+LW K + + +I R+ DNFW M +TGPCGPCSEIF DQG Sbjct: 120 DKSVLYVTIHESDDEAFELWCK--HIDSSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQG 177 Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+A +L+ Sbjct: 178 AEFFNGEEDYFGGDGDRFLEIWNLVFMQYERSADGSLKPLPKPSIDTGMGLERVAALLEG 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +N+D +F LI E ++ Y + + RVI DH R+ +FL+A G+ EGRGY Sbjct: 238 KRSNFDSSIFMPLIHKVESLSKQTYVYESGASFRVIADHARAVAFLLAQGVNFDKEGRGY 297 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LLG + + ++ +C MG Y L + K ++E ++E+ERF Sbjct: 298 VLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDTMGGHYGYLKERKNAVQEQCKAEEERFF 357 Query: 360 KTLDRGLVLLDGVLSHLG------------------------------------------ 377 +T++ G+ L + + L Sbjct: 358 ETIESGMALFNKEIQTLKAKTNTKAFGLNNDNAEAVEMRNCGFQGGDEGSYLEGNDRASN 417 Query: 378 --------KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429 +G+VAFKLYDT+G PLD+ QD+L GL +D+ SF + ++EQ+ R+ Sbjct: 418 AESAIHRSNATRFSGEVAFKLYDTYGFPLDLTQDMLRELGL-DVDMQSFEKCMQEQKDRS 476 Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489 +AH G G + + +L ++G F+GY+ + V Sbjct: 477 KAHWKGSGDSAKDGDFNALLSEFGENAFVGYENV-----------------------SVE 513 Query: 490 SIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITD 545 S + A++ + VE +GQ+ V+ + TPFY E+GG +GD G +G + + Sbjct: 514 SKILALLDSSFKRVESLGAGQEGWVMLESTPFYPESGGPVGDKGFLLGHSVLSDKSGGAS 573 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN-------------------------- 579 + V H+ + SL ++ Sbjct: 574 YCSLQRTLSVSHSQDLHNPDFSSQSLECQDSHKVDSSSPQNIVAKVLDTQKYFGLNLSKV 633 Query: 580 -------------------RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 R +++ +HSATHLLH+AL ILGSH++Q GS + + LRFD Sbjct: 634 VATSMLKAGDLVKAQVDSSRFEIAKHHSATHLLHYALRQILGSHIAQAGSLVETNRLRFD 693 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680 +H K + + EL+ IE VN IA++ P V M +A A GA AL G KY + VRV+S Sbjct: 694 FSHPKALNTDELEQIEALVNSKIAESSPQVCETMGITEAKAKGAMALFGEKYGENVRVIS 753 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 S LCGG H+ +T EI YIV ESS+ +G+RRIEA+ G+ A + E Sbjct: 754 FGD------SIELCGGIHIQNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYHYGKNALE 807 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 +K LK +++ + ++ E+ ++L+ + K + L + V ++ Sbjct: 808 SIKQAKEALKAQ--DIIQGIFKLKEQIKELKEKAS--KSSTGAKTLESKMLNGVKLIALK 863 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 + D+KE K ++D + + + I+L+ K ++ V + + + A + A Sbjct: 864 LENTDTKEAKELVDNAKNENEKVAILLI-TESSGKVTITAGV-KGVESKLKAGAWVKQVA 921 Query: 861 KVLGGGGGGGRPHMAQSGGP--NGNKADQAIAGVAS 894 ++L GG GGGR A +GG + NK +A+ Sbjct: 922 QIL-GGNGGGRDDFATAGGKITDSNKIKEALGLAEK 956 >gi|307721802|ref|YP_003892942.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294] gi|306979895|gb|ADN09930.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294] Length = 850 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 335/896 (37%), Positives = 493/896 (55%), Gaps = 53/896 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF+ H +PS+ L+P +D TL+F N+GMVPFK+IFTG+ T+ Sbjct: 2 DIREEYLKFFESKQHTRVPSAPLVP-DDATLLFNNAGMVPFKSIFTGEVPRPANPRATSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ LD+ + Sbjct: 61 QTCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFITEVLHLDKDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 L++TV++ D+EA +WKK ++A++I+R+ DNFWSM +TGPCGPCSEIF+DQG E Sbjct: 121 LWVTVHESDDEAEAMWKK--HIAAERIMRLGDKDNFWSMGDTGPCGPCSEIFYDQGAEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFE-QQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G EG+R++EIWNLVFMQ+E ++ +R L SIDTGMGLER+ + + + Sbjct: 179 TGPEDYMGGEGDRFLEIWNLVFMQYEVKEKGGQRVPLAHPSIDTGMGLERVVAIKEGALS 238 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NY LF +I+ E + G +Y + ++RVI DH+R++ FL+A G+ +NEGRGYVLR Sbjct: 239 NYGSSLFMPIIRKVEDMIGKEYIYASGASYRVIADHIRTTVFLLAQGVNFSNEGRGYVLR 298 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LLG+ EP M L+ L MG Y L ++E + E+ RF KT+ Sbjct: 299 RILRRAVRHGYLLGFREPFMYKLVDTLVDIMGGEYEYLNTKANAVKEQIELEEARFFKTI 358 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 + G+ L + + + +G+VAFKLYDT+G PLD+ +D+L + L+ +D F + + Sbjct: 359 ESGIALFNMEMQNTKDA--FSGEVAFKLYDTYGFPLDLTEDMLKEKNLS-LDTAKFEELM 415 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQR RA+A G G + +L E++G +F+GY+ Sbjct: 416 SEQRKRAKAAWKGSGDDAVSGDFKALLEEFGENEFVGYET-------------------- 455 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 T+ S ++ + + VE + GQK V D TPFYA++GGQ GD G L Sbjct: 456 --THHASKVLSLLDENFIRVEALIKGQKGWVFLDVTPFYAQSGGQCGDAGELKEHAKVLD 513 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 L+ ++ +D ++ +HSATHLLH L +LG Sbjct: 514 TKKFFGLNLSRIAV-----ENELKVGDAVDAEVDISRNE-ITKHHSATHLLHAVLFDVLG 567 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 H+SQ GS + + LRFD +H K ++ EL+ IE+ VN I + +P T ++ E+A S Sbjct: 568 EHISQAGSLVEANRLRFDFSHPKAVSEQELQEIEERVNVEIMRAIPAQTEVLPIEEAKKS 627 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA + G KY D VRVVS S CGG HV +T I I ES + AG+RR Sbjct: 628 GAKSQFGEKYGDEVRVVSFA-----DASVEFCGGVHVENTANIGSFIITKESGVSAGVRR 682 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G A + Q LK +K +++ + + +L+ + + Sbjct: 683 IEAVCGNTAYKYFCEQRALLKEAQGEVK--NLDLLAGIHRLKSNIAELKSELKEAQESAK 740 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 VE K +N ++ ++ E+ S ++K +D L+ + ML + + K + V Sbjct: 741 VE----IKTDAINGVTVVVDELPSGDIKEKIDELKNQNDKLCAMLFQVKGD-KVLIAAGV 795 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A D + A +LGGGG GGRP AQ+GG + +K +A F+ + Sbjct: 796 KG---CEAKAGDWIKKIAPILGGGG-GGRPDFAQAGGKDASKLPEAKEEAMKFITE 847 >gi|264678535|ref|YP_003278442.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2] gi|262209048|gb|ACY33146.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2] Length = 834 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 349/875 (39%), Positives = 502/875 (57%), Gaps = 56/875 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTNSGMV FK++F G +K Y T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+ Sbjct: 1 MFTNSGMVQFKDVFLGTDKRPYNRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNW 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT- 155 SFG YFK+ +I+ W+LLTK F L +L TVY ED+EA+ +WK + GL A++IIRI Sbjct: 61 SFGDYFKKESIEWGWELLTKVFGLPAEKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGD 120 Query: 156 ------TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQF 208 +DNFW MA+TGPCGPCSEIF+D GE I GG P E+G+R+IEIWN VFMQF Sbjct: 121 NKGGKYKSDNFWMMADTGPCGPCSEIFYDHGEHIAGGPPGSPDEDGDRFIEIWNHVFMQF 180 Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268 + + LP +DTGMGLER+A +LQ +NY+IDLF+ LI+A+ + T + + Sbjct: 181 DMKEDGSVVKLPAPCVDTGMGLERLAAILQHVHSNYEIDLFQALIKAAGRETSTED--LS 238 Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328 + +VI DH+R++SFL++DG++P+NEGRGYV RRI+RRA+ + LG P L+ Sbjct: 239 TPSLKVIADHIRATSFLVSDGVIPSNEGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVAD 298 Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388 L +MG AYP+L + + I L++E+ERF +TL G+ +LD L+ G ++L GDVAF Sbjct: 299 LVVQMGDAYPKLKEQEAHITSVLKAEEERFFETLANGMEILDSALA--GDVKVLPGDVAF 356 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 KL+DT+G PLD+ D+ RG+ +D FN A++ Q+ ARA K+ +L Sbjct: 357 KLHDTYGFPLDLSNDVARERGVT-VDEAGFNAAMQHQKETARAAGKF-------KMDRAL 408 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 + A F GYD L ++ + A+ G V E +G Sbjct: 409 EYTGDANVFTGYDKL-----------------------AEAAKIVALYADGVSVNELKAG 445 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 Q VV D TPFYAE+GGQ+GD G G R + D K +F HH ++E G L+ Sbjct: 446 QSGVVVLDTTPFYAESGGQVGDQGVIAAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVG 505 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 ++ +D R NHS TH++H AL +LG HV Q GS + + RFD H+ P+T Sbjct: 506 DAVEAQVDTAVRAATMRNHSVTHIMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPVT 565 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 + +++ IE VN + N R+M+ E A +GA L G KY + VRV+ + Sbjct: 566 AEQIREIEARVNAEVLANTATDARVMDIESAQKTGAMMLFGEKYGETVRVLDIGS----- 620 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S LCGGTHVS TG+I L +V ES + AG+RRIE ITG+ A ++L + + A+ Sbjct: 621 -SRELCGGTHVSRTGDIGLFKVVGESGVAAGVRRIEGITGENALAYLQSLESTVDQAAAA 679 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISE 803 K + R+ ++ + L+ A K +L + V ++ + Sbjct: 680 FKAPAAELTNRIGGALDQIKALEKEIAALKGKLASSQGDELATQAADVNGVKVLAAKLEG 739 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 D+K L+ MD L+ K+ + +I+L + + K + VT+ + A +L A+ + Sbjct: 740 ADAKTLRDTMDKLKDKLGAAVIVLAAVDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQV 798 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GG G GG+P MA +GG + A+A V +++ + Sbjct: 799 GGKG-GGKPDMAMAGGTDAAAVPAALASVQAWVAE 832 >gi|262408299|ref|ZP_06084846.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22] gi|294645925|ref|ZP_06723596.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a] gi|294805880|ref|ZP_06764750.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b] gi|262353851|gb|EEZ02944.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22] gi|292638725|gb|EFF57072.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a] gi|294446909|gb|EFG15506.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b] gi|295086606|emb|CBK68129.1| alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A] Length = 872 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 483/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G + K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNADGLPAAVEKVLEL 869 >gi|256379272|ref|YP_003102932.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827] gi|255923575|gb|ACU39086.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827] Length = 890 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 331/920 (35%), Positives = 495/920 (53%), Gaps = 60/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I F E F+ GH ++PS+SL+ +DP L+F N+GMVPFK F G+ ++ Sbjct: 1 MQTHEIIKRFREHFENAGHAVVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEAPSPHKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D+D VG+T RH TFF+M GNFSFG YFKE AI+LAWDL+TK Sbjct: 60 TSVQKCVRT----PDIDEVGKTTRHLTFFQMAGNFSFGDYFKEDAIRLAWDLVTKSQDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL++TVY +D+EA LW+KI+GL ++I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGFDPERLWVTVYLDDDEAADLWQKIAGLPPERIQRRDVEDNYWSMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + +RY+EIWNLVFMQ E+ + P +IDTGMG+ Sbjct: 176 YDRGPEF-GAEGGPVVDEDRYLEIWNLVFMQNERGAGGAKRDYPILGELPSKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G KY + V RVI DH RS L+ D Sbjct: 235 ERVAFLLQGVDNVYETDLVRAVITKAEELSGRKYGDNPTDDVRFRVIADHARSGVLLVGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NE RGYVLRR++RR + +RLLG TEP++ + MG +YPEL+ IE Sbjct: 295 GVTPGNEARGYVLRRLLRRIVRSSRLLGVTEPVLQTFAAVVRDTMGPSYPELVSGFARIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + L++E++ F +TLD G + + IL GD AF+L+DT+G P+D+ ++ Sbjct: 355 QVLKAEEDTFLRTLDAGSRIFETAAGTVKSQGRAILPGDKAFQLHDTYGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + + EQR+RA+A + G +G ++ + + GAT+F GY L Sbjct: 415 EAGLT-VDEDGFRKLMAEQRARAKADAAGKKTGHGDQTVYRELLELGATEFTGYTELAS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++++ IV G+ V+ A G VEVV D+TP YAE+GG Sbjct: 473 ----------------------EAVLRGIVSGGKRVKSAREGDIVEVVLDRTPLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q D G + G L++ DVQK A ++VH V G + + +D + R Sbjct: 511 QESDAGVIVSGGAELEVVDVQKVARKLWVHQVRVVSGEIAEGEKVEARVDAEWRVGARQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG Q+GS P LR D + ++ + IE+ N + ++ Sbjct: 571 HSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWTGGLSESTRSEIEEVSNLAVRKD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 LPV + A GA AL G Y++ VRVV + GG S LCGGTHV + +I Sbjct: 631 LPVSVVYTDMGGAQEMGAVALFGETYDETVRVVEI----GGRWSRELCGGTHVEHSSQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G+RR+EA G A +L + ++++A+ LKV V GRVE + E Sbjct: 687 PITVIGESSVGSGVRRLEAYVGIEAFKYLARERALVQNVAAMLKVPDAEVPGRVEALVER 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 R + K + V + V+ ++ + +++++ ++ ++ Sbjct: 747 LRVAEKELEKVRSAQLVASAGSLVSQALDVRGVSVLALALPEGTSGADVRAIASEVRGRM 806 Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + G++ L + K S ++ T D A L A + GG GGG+P +AQ Sbjct: 807 ADKPGVVALFAPDGD-KVSFVVATTAGARDLGLAAGKLVPAFAPAV-GGRGGGKPDLAQG 864 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG N QA+A V + ++ Sbjct: 865 GGTNPAGVPQAVAAVLAEVE 884 >gi|298480309|ref|ZP_06998507.1| alanine--tRNA ligase [Bacteroides sp. D22] gi|298273590|gb|EFI15153.1| alanine--tRNA ligase [Bacteroides sp. D22] Length = 872 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 483/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G + K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNADGLPAAVEKVLEL 869 >gi|303233900|ref|ZP_07320549.1| alanine--tRNA ligase [Finegoldia magna BVS033A4] gi|302494825|gb|EFL54582.1| alanine--tRNA ligase [Finegoldia magna BVS033A4] Length = 873 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 325/909 (35%), Positives = 511/909 (56%), Gaps = 53/909 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N ++ IR FL++F + GH ++ S LIP +D +L+ N+GM P K FTG++K Sbjct: 1 MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK AI AWD LT E Sbjct: 61 DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + L+++VY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175 Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +G +EGER++E+WNLVF QF + + + +IDTGMGLER+ VL Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 + N ++I L K +I+ E+++G+KY N V+ R+I DH+R+ +FLI DG++P+NE Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RGYVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+ Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ++F +TLD GL +LD +L ++ +G+ AFKLYDT+G P+D+ ++++ +D Sbjct: 356 KKFQETLDLGLNILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + F + +EEQ+ RAR G + + E T+F GY+ L+ Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFGGYNSLKD---------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V I + E +GQ +V D T FY E GGQ+GD G Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV+Q GS + + LRFD+TH + ++ +L+ +E VND IA +PV M+ Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E++ + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SESS Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG+ +L +D + ++ LK ++ + R+E EE + L+ Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDSLIDNVKRSLKASNEDEITRRIEMNTEEIKGLKKKL 741 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + ++ ++ + +S +D+ + + ++ K++ G+++L Sbjct: 742 KDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDGVVILAN 801 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + +K D+A Sbjct: 802 -SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859 Query: 889 IAGVASFLK 897 + + Sbjct: 860 LQKGIETVN 868 >gi|293569836|ref|ZP_06680923.1| alanyl-tRNA synthetase [Enterococcus faecium E1071] gi|291587584|gb|EFF19461.1| alanyl-tRNA synthetase [Enterococcus faecium E1071] Length = 880 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 340/920 (36%), Positives = 503/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK +AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNKAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ ++ + Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879 >gi|153951507|ref|YP_001398463.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97] gi|205830016|sp|A7H4N3|SYA_CAMJD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152938953|gb|ABS43694.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97] Length = 842 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 345/897 (38%), Positives = 502/897 (55%), Gaps = 62/897 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF HE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ T+ Sbjct: 2 DIRKAYLDFFASKRHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + R Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 LYITV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LYITVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSANGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDSIKEQIRFEEERFLSTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++RA+A G G T + +L EK+G F+GY+ Sbjct: 416 EQKARAKASWKGSGDKTVSGDFKNLLEKFGENHFVGYEKAE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V V+ + TPFYA +GGQ D + Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503 Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +V + ++ + ++ G + ID + R Q++ +HSATHLLHHAL IL Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVGTIAHARIDAEKREQIARHHSATHLLHHALREIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+R Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A + Q E L LK + +++ V+++ E L+ Sbjct: 678 RIEAVVSKAALEFVKNQLEGLSKAKDELKNN--DILSGVKKLKNEILSLKNELKN----S 731 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +L I V + D+ ++K+++D + K +I+L+ + K++K ++ Sbjct: 732 SKTELDSKNIQGVEICVKRV---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V + A L + +A++L GG GGGR A +GG + +K D+A+ ++K Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKIDEALKQSLETIEK 840 >gi|255690436|ref|ZP_05414111.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565] gi|260623884|gb|EEX46755.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565] Length = 872 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSDTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN+ +++Q+ RAR + W +LKE G T+F+GYD Sbjct: 419 ILRENGMIVNIEE-FNEEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIRQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNTP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + ++ V + + ++ +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAALKERLLKNIQEVNGVKVIKLCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G + K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSTDNGKPMLTVMLSDNLVATGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNADGLPAAVEKVIEL 869 >gi|302380501|ref|ZP_07268966.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3] gi|302311444|gb|EFK93460.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3] Length = 873 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 324/909 (35%), Positives = 511/909 (56%), Gaps = 53/909 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N ++ IR FL++F + GH ++ S LIP +D +L+ N+GM P K FTG++K Sbjct: 1 MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK AI AWD LT E Sbjct: 61 DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + L+++VY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175 Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +G +EGER++E+WNLVF QF + + + +IDTGMGLER+ VL Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 + N ++I L K +I+ E+++G+KY N V+ R+I DH+R+ +FLI DG++P+NE Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RGYVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+ Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ++F +TLD GL +LD +L ++ +G+ AFKLYDT+G P+D+ ++++ +D Sbjct: 356 KKFQETLDLGLNILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + F + +EEQ+ RAR G + + E T+F GY+ L+ Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFDGYNSLKD---------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V I + E +GQ +V D T FY E GGQ+GD G Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV+Q GS + + LRFD+TH + ++ +L+ +E VND IA +PV M+ Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E++ + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SESS Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEAITG+ +L +D + ++ LK ++ + R+E EE + L+ Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDSLIDNVKHSLKASNEDEITRRIEMNTEEIKGLKKKL 741 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + ++ ++ + ++ +D+ + + ++ K++ G+++L Sbjct: 742 KDMTNKDLSSNVDSVINDAVEVNGTKVCTFELNGLDNNSFRDFGENIKSKLEDGVVILAN 801 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + +K D+A Sbjct: 802 -SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859 Query: 889 IAGVASFLK 897 + + Sbjct: 860 LQKGIETVN 868 >gi|153807409|ref|ZP_01960077.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185] gi|149129771|gb|EDM20983.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185] Length = 872 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 485/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAVMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMEDTKAAGKIEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +++ FN +++Q+ RAR + W +LKE G T+F+GYD Sbjct: 419 ILRENGMT-VNLEEFNAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E + ++ R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPFMACVNTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNARI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ IVSESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIVSESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YLEENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G + K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSTDAGKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNADGLPAAVEKVLEL 869 >gi|257884661|ref|ZP_05664314.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501] gi|257820499|gb|EEV47647.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501] Length = 880 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 340/920 (36%), Positives = 501/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LYITVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYITVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 DALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L +E K S+L +T++ + A DL + A +GGGG GGRP MAQ+G Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ ++ + Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879 >gi|326382143|ref|ZP_08203835.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] gi|326198873|gb|EGD56055.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] Length = 900 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 323/933 (34%), Positives = 483/933 (51%), Gaps = 74/933 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F + GH +PS+SLI +DP L+F N+GMVPFK F G + P Y Sbjct: 1 MQTHEIRKRFLDHFIRAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGDQTPPYDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG T RH+TFF+M GNFSFG YFK AI AW LLT Sbjct: 60 TSVQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWKLLTDSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +D +L+ TVY +D+EA +W+ G+ A++I R DN+WSM GPCGPCSEIF Sbjct: 116 GYGIDPTKLWPTVYLDDDEAESIWRDEIGVPAERIQRRGMADNYWSMGVPGPCGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ E+ + + LPK +IDTGMG+ Sbjct: 176 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTSKDDYEILGPLPKKNIDTGMGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL K +I + ++TG Y + V RVI DH R+++ LI Sbjct: 235 ERVACLLQGVDNVYETDLMKPIIDLAAELTGRAYGAGNHEDDVRFRVIADHARTAAMLIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL------------MMHLLPALCTEMGS 335 DG++PAN+GRGYVLRR++RR + RLLG + M ++ + M Sbjct: 295 DGVVPANDGRGYVLRRLLRRIVRSIRLLGAGNEVSGPDGRGAANPTMERIISEVIDVMSP 354 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDT 393 +YPEL Q + I +E+ F +TL G L ++G AF L+DT Sbjct: 355 SYPELEQQRTHIVSVAVAEETTFARTLAAGSKLFSEAADATKKAGSSSISGTDAFTLHDT 414 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P+D+ ++ GL +D F + + EQR+RA+A + S + + G Sbjct: 415 YGFPIDLTLEMAAEAGLE-VDRDGFKELMGEQRARAKADASARKSSHADHSVYREFLDRG 473 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 AT+F G+D L + V +V G+ V A G ++E+ Sbjct: 474 ATEFTGFDELVS-----------------------EARVLGLVAGGQRVRSAAPGTELEL 510 Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D++P YAEAGGQ+ D G GDG+RL + DVQK + +++H +V+ G + ++ Sbjct: 511 ILDRSPLYAEAGGQMADRGTITTGDGVRLAVKDVQKVGKKVWLHKVVVDEGEIVEGDEVL 570 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 ++D R + HS TH++H AL +LG +Q GS P LRFD +T A+ Sbjct: 571 ASVDAGWRHGATQGHSGTHMVHAALRQVLGPTATQAGSLNRPGYLRFDFHAGTGLTDAQR 630 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 IE N + N V T + A + GA AL G Y DRVRVV + GG S Sbjct: 631 DEIEQIANQAVESNFAVNTFETDLAKAKSMGAMALFGENYGDRVRVVEI----GGPFSME 686 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTHV+S+ +I + ++ ESS+ +G RR+EA G + +L + + LA+ LKV Sbjct: 687 LCGGTHVASSAQIGPITVIGESSVGSGTRRVEAYVGMDSFRYLSRERALMAGLAASLKVP 746 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDS 806 V RVE++ + ++ + + + +S + D ++ + VD+ Sbjct: 747 SEEVPDRVEQLVLKLKEAEKAVESLRAEQARAAVSGLIDEGATVGDTLVVAARVADGVDA 806 Query: 807 KELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVL 863 L+ ++ L+ +I ++ ++ L + K I T+ A DL + A ++ Sbjct: 807 NGLRGLVTDLRGRIADRNAVVALFSAV-DGKVPFAIGTTDAARGSGIKAGDLVKEVAPIV 865 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P +AQ G + D A+ + + Sbjct: 866 A-GRGGGKPDLAQGSGTDAAGIDAALVRLREVV 897 >gi|269121339|ref|YP_003309516.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] gi|268615217|gb|ACZ09585.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] Length = 870 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 316/912 (34%), Positives = 506/912 (55%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F++FF+ H+ S+SLIP +D TL+ T +GMVPFK+ F G+++ ++ + Sbjct: 1 MTGNEIRKSFIDFFKSKEHKYFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKEAPFKRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R NDL+NVG T RH TFFEMLGNFSFG YFK AI +W+ +T+ LD Sbjct: 60 TTYQKCIRT----NDLENVGVTTRHQTFFEMLGNFSFGDYFKREAIFWSWEYITEILKLD 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+++V+ +D+EA+ +W K G+ ++I+R+ +DN+W+ G CGPCSEI+ D GE Sbjct: 116 SEKLWVSVFLDDDEAYDIWNKEVGVPEERIVRLGEDDNWWAAGPIGSCGPCSEIYIDLGE 175 Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + +RY+EIWNLVF ++ + LP+ +IDTG GLER+A V+Q+ Sbjct: 176 KLGCGNLDCKPGCDCDRYLEIWNLVFTEWNRLEDGSLIPLPEKNIDTGAGLERIAAVMQK 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +N+D DLF +I +E++ ++ ++I DH+R+++FLI DG+LP+NEGRGY Sbjct: 236 KESNFDTDLFIPIINETEKILEVERNNKTDKALKIIADHVRAAAFLIGDGVLPSNEGRGY 295 Query: 300 VLRRIMRRAMCYARLLG-----YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 +LR+++RRA A + + + L+P + M AYPE+ IE+ ++ E Sbjct: 296 ILRKLIRRAFGVASTIKERIFEKEDIFLYRLVPVVAEIMKEAYPEMESKIDYIEKVMKIE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F TL G+ +L + L KD + +++FKLYDT+G P ++ +++L Sbjct: 356 EEKFTVTLKNGVEILKEEVEKLKKDGKDKFPSEISFKLYDTYGFPFELTKEVL-EYEEIE 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 + F + LEEQ+ R+++ + ++ EK+G T+FIGY+ + Sbjct: 415 VSEDEFLEKLEEQKIRSKSSKETISDMIKDEFIDEFYEKHGKTKFIGYEEKEAKAKILHI 474 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 K E++FDQTPFYAE+GGQ+ DTG Sbjct: 475 NKSHGSS------------------------------NYEIIFDQTPFYAESGGQVADTG 504 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSATH 591 + K + +++H + +GI+ L L ID R+ NH+ATH Sbjct: 505 IINSQDLFEGKVVNVIKKKDVYIHEVELIKGIIPKIGDELTLKIDKFKRKDTQRNHTATH 564 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LGSHV Q+GS + + LRFD +H + ++ ++++IE N I+ +N+ + Sbjct: 565 ILHKALREVLGSHVEQSGSLVDSERLRFDFSHYEAVSPEQIEAIERIANQIVLENIELAV 624 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E A A GA AL G KY D VRVV + S LCGGTHV STGEI L+ I Sbjct: 625 YNEDIETAKARGAMALFGDKYGDEVRVVEIP-----QFSIELCGGTHVKSTGEIGLINIE 679 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G+RRI A TG ++ + +E K LA LKV + + VE++ E Y+ L+ Sbjct: 680 SESGIASGVRRITATTGYKSLDFVNTLEESQKELAKSLKVEEKKIKEAVEKLKESYKDLE 739 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +++ +++ +I + D++ELK ++D ++ K++SG+++ Sbjct: 740 KDYNDLQMKFLKYEINDLMGHIIEINGTKVLIKGFENKDNEELKEIVDRVKDKLKSGVVL 799 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + A L V++DL + A D+ + +K + G GGGRP AQ+GG G K Sbjct: 800 IGA--NNGNAMFLAGVSKDLTGKIKAGDIVKEVSK-IANGNGGGRPDFAQAGGKAGEKVY 856 Query: 887 QAIAGVASFLKK 898 +A+ +L++ Sbjct: 857 EALEHGKRYLEE 868 >gi|38233936|ref|NP_939703.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129] gi|48428504|sp|P61699|SYA_CORDI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|38200197|emb|CAE49878.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae] Length = 888 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 326/919 (35%), Positives = 492/919 (53%), Gaps = 61/919 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MQTHEIRERFTNHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWQLLTGTVA 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 LD RL++TVY +D+EA ++W K G+ +++I R+ DN+WSM GPCGPCSE Sbjct: 116 EGGLGLDPERLWVTVYLDDDEAAEIWNKKIGVPSERIQRLGMADNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+G G G + RY+EIWNLVFM+ E+ N + LPK +IDTGM Sbjct: 176 IYYDRGPEY-GAEGGPIADDNRYMEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286 G+ER+A +LQ N Y+ DL + +I +E++TG Y N+ N RVI DH R+ LI Sbjct: 235 GIERVACILQGVDNVYETDLLRPVINVAEELTGATYGTNDDDNIRFRVIADHSRTGMMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + A LLG + + + M +YPE+ + Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGKTLEKFMNTIMDTMTPSYPEIADNRER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E++ F KTL G L + + +++L+G AFKL+DT+G P+D+ ++ Sbjct: 355 ILRVAITEEKAFLKTLASGTELFEDKADQVKNSGNKVLDGAAAFKLHDTYGFPIDLTLEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +DI FN + EQR+RA+A + G + + T F GYD L Sbjct: 415 AAEAGL-NVDIEGFNSLMAEQRARAKADNRAKKHGHADLSIYREWVDEHPTVFTGYDELT 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V ++ G V E +G++VEV+ + +P YAEA Sbjct: 474 TD-----------------------SKVLGLLSAGNKVNEIKAGEEVEVILEASPLYAEA 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQLGD G + L++ DVQK + ++VH A V +G L + +D R Sbjct: 511 GGQLGDRGQILMGDTVLKVNDVQKIGKKLWVHKATVAQGGLSVGDVVTAQVDSDWRHAAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ THL+H AL +LG Q GS P LRFD +++ +T +L+ I++ N + Sbjct: 571 QAHTGTHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTESLTPRQLEEIQNITNQAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E+A A GA AL G Y VRV+ V GG S LCGGTHV+ + + Sbjct: 631 SDWDVNTIETSLEEAKAMGALALFGENYGSEVRVIEV----GGPFSIELCGGTHVTHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I+ ESS+ +G+RRIEA TG + +L + ++++AS +KV + R+ + Sbjct: 687 IGPVAILGESSVGSGVRRIEAYTGLDSFKYLAKEQALVENIASSMKVKPEELPDRIAALT 746 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVMDALQK 818 ++ + + A + + + ++ V ++ +S+V + +L+S+ +++ Sbjct: 747 QKLKDAEKAIADMRSAQLMAQATGLVAGAIEVNGVKLVAQRVSDVENMGDLRSLAADIKQ 806 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ ++ LVG KA ++ T+ + + A A++ + + G GGG+P MA Sbjct: 807 RLDDVPAVVALVGEDASGKAPFVVGATKAAVSAGYKANAYAKILGQYIE-GNGGGKPDMA 865 Query: 876 QSGGPNGNKADQAIAGVAS 894 Q N + DQ IA V + Sbjct: 866 QGSARNSSGFDQGIAAVKA 884 >gi|237714467|ref|ZP_04544948.1| alanyl-tRNA synthetase [Bacteroides sp. D1] gi|229445631|gb|EEO51422.1| alanyl-tRNA synthetase [Bacteroides sp. D1] Length = 871 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 482/918 (52%), Gaps = 74/918 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ V Sbjct: 1 MTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L+ Sbjct: 61 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKLN 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LY TV++ D+EA W++ L D II +DNFW M +TGPCGPCS Sbjct: 121 PEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + IEIWNLVFMQ+ ++ LP IDTGMG Sbjct: 179 EIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 FERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSIT 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKTL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + I Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L G+ FN+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 LRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYTE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R++ + + ++V D TPFYAE+ Sbjct: 471 YEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAES 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GDTG + + +++ D +K+ ++ E ++ +D R + Sbjct: 503 GGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAACA 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 ANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARIR 619 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++TG Sbjct: 620 ANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAATG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 NIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRKY 732 Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 LDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAP-LPAEVVKNIAFQLRG 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +I + + G + K + ++++++L+ A +L + +AK++ GG GGG+PH A + Sbjct: 792 EITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 850 Query: 878 GGPNGNKADQAIAGVASF 895 GG N + A+ V Sbjct: 851 GGKNADGLPAAVEKVLEL 868 >gi|225428201|ref|XP_002278951.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera] Length = 1006 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 331/929 (35%), Positives = 494/929 (53%), Gaps = 72/929 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ SIR FL+F+ GH++LPSSSL+P +DPT++ T +GM+ FK IF G+ Sbjct: 107 TSGDSIRHRFLDFYASRGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKVPRQVPRA 165 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+C+R ND++NVG+T+RHHTFFEMLGNFSFG YFK+ AI+ AW+L T E+ L Sbjct: 166 TTAQRCIRT----NDVENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLP 221 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+I+VY++D+EA +W K G+ ++I R+ DNFW+ TGPCGPCSEI++D Sbjct: 222 ADRLWISVYEDDDEALAIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHP 281 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + R+IE +NLVFMQ+ +++ L +M+IDTG+GLERMA +LQ+ Sbjct: 282 E-RGYSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVP 340 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRG 298 NNY+ DL +I+ + ++ + Y + N +VI DHLR+ +LI+DG++P+N GRG Sbjct: 341 NNYETDLIYPIIEKASELANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRG 400 Query: 299 YVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEET 350 YV RR++RRA+ RLLG + + + P++ I E Sbjct: 401 YVARRLIRRAVRTGRLLGIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEE 460 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQD 403 L+ E+ RF +TL+RG LLD +L++ G IL+G F LYDT+G P++I + Sbjct: 461 LKREELRFVQTLERGEKLLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTE 520 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 RG GID+ F +E QR +++A + L E T+F+GY+ L Sbjct: 521 AAEERG-VGIDMNGFEIEMENQRRQSQAAHNAVKLAVGNSA--DLTENISDTEFLGYETL 577 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 ++++ ++ G V + G VE+ ++TPFYAE Sbjct: 578 -----------------------STKAVIEGLLVNGNPVIQVSEGSDVEIFLNRTPFYAE 614 Query: 524 AGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 +GGQ+GD G ++I DVQK IFVH ++ G++ + +D Sbjct: 615 SGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTIKEGVVEVGKEVEAAVDA 674 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R++ I+H+ATHLL AL ++G SQ GS + D LRFD +P+ EL IE+ Sbjct: 675 NLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFDFNFHRPLQEKELVEIEE 734 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 +N I + T++M DA +GA A+ G KY ++VRVV V S LCGGT Sbjct: 735 LINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 789 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HVS+T EI I+SE I +GIRRIEA+ G ++ +D ++ L S LKV V Sbjct: 790 HVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQLCSTLKVKAEEVT 849 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--------CHKIADVNFMSHIISEVDSKEL 809 RVE + EE R + + + + V S + + + ++D+ L Sbjct: 850 TRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVLVESMDDIDADSL 909 Query: 810 KSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 KS + L +Q ++L E+K S++ T ++D A AK+ GGGG Sbjct: 910 KSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGVVDLGIQAGKFIGPIAKLCGGGG 969 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGRP+ AQ+GG A+ L Sbjct: 970 -GGRPNFAQAGGRKPENLSGALEKAREEL 997 >gi|307298258|ref|ZP_07578062.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916344|gb|EFN46727.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 869 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 339/905 (37%), Positives = 513/905 (56%), Gaps = 49/905 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++L+FF+ H+ L S+SLIP NDP LMFT +GMVPFK IF G+ +P Y+ V Sbjct: 4 MTGAEIRESYLKFFESKDHKRLQSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYRRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR ND++NVGRT RH TFFEMLGNFSFG YFK I+ AW+ +T+ +L Sbjct: 63 TTCQKCVRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKRETIKWAWEFVTEYLNLP 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + RL+++VY +D+EAF +W+ G+ KIIR+ DN+W +GPCGP SEIF D+G Sbjct: 119 ENRLWVSVYLDDDEAFSIWRDEVGIPEKKIIRLGKKDNWWGPAGPSGPCGPDSEIFIDRG 178 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C + + R++E WNLVF +F Q + L + +IDTG GLER A++L Sbjct: 179 HGDNCPDPENCSPACDCGRFLEFWNLVFTEFNQDEEGNLTYLERKNIDTGFGLERAASIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ +N+D DLF +I+ E++ G+KY+ + ++ +VI DH RS +F+++DGILP+NE Sbjct: 239 QDVDSNFDTDLFIPIIKKIEEILGIKYKEKPGSDISIKVIADHARSVAFMVSDGILPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ ++ LLGY+ P + ++ + MG+ YPEL Q +E E+ Sbjct: 299 GRGYVLRRILRRAVRHSSLLGYSSPFLYRIVETVADHMGNVYPELRQRLSFTQEITLKEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF TL G L V L + L+G F L+DT+G PL+++++I+ G+ +D Sbjct: 359 ERFLSTLVNGEKRLKSV---LVDKKELSGPELFMLHDTYGFPLELVEEIVAGTGVT-LDK 414 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + + + QR RAR + + + ++ G ++F GY Sbjct: 415 EGYEREMALQRERAREAMGDREYLSNVEAYSTIFPVTGNSKFTGYSRFED---------- 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + AI+++G+ VE G+ +++F++TPFY E GGQ+ DTG Sbjct: 465 -------------KSKIVAILKEGDAVETLSKGETGDLIFEKTPFYPERGGQVTDTGLIR 511 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ V + + VH A VE G L L++D R+ ++ NH+ATHLLH Sbjct: 512 TDNASAKVERVFIPYQEMIVHRAFVEEGALHVGDKAWLSVDEDRRKAITRNHTATHLLHA 571 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q+GS + PD LRFD +H +P+++ EL +E+ VN+ I + V + Sbjct: 572 ALRKVLGEHVHQSGSLVQPDRLRFDFSHFQPLSTDELNEVEEIVNEEILKAKVVDKAEKS 631 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++ AL KY D+VRV+SVE S LCGGTHV +TGEI L I+S++S Sbjct: 632 FDEIKGQDVMALFEEKYGDKVRVISVEG-----FSRELCGGTHVDNTGEIGLFKILSDTS 686 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG RRIEAITG+ + ++ + K++ L+V + ++ R++ + E + Sbjct: 687 VAAGTRRIEAITGKTSLNYFRNLFNRQKTIREVLEVPEDLIIQRLQGVLNELKSGGQEIK 746 Query: 776 KRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + K +L D + + + S L++ D L K GI+++ Sbjct: 747 RLKEKLLSGDSLMKDKKMIVNGTKLLIRRVENAPSSALRNGADVLLSKEGGGIVIIFN-E 805 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E S ++ V + L D+FNA ++AR A+ LGGGG GGRP AQ+GG + +K I Sbjct: 806 LEDSVSFVVKVEKKLTDKFNAGEIARKIARDLGGGG-GGRPDFAQAGGKDLSKLQTLIER 864 Query: 892 VASFL 896 + +L Sbjct: 865 IDEYL 869 >gi|306836213|ref|ZP_07469197.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726] gi|304567934|gb|EFM43515.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726] Length = 894 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 323/927 (34%), Positives = 491/927 (52%), Gaps = 66/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F + F +GHE++PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MKTHEIRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW+LLTK+ Sbjct: 60 LATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVE 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSE Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGM 228 I++D+G G G + RY+EIWNLVFMQ E+ K + I+ PK +IDTG+ Sbjct: 176 IYYDRGSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFEIVGELPKKNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284 G+ER+A +LQ N Y+ DL + +I +E++TG Y N + RV+ DH R+ Sbjct: 235 GIERVACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQENNIRFRVVADHSRTGMM 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P NEGRGY+LRR++RR + A+LLG P M + + M +YPE+ + Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAEGPTMERFMNTVMDTMTPSYPEIADNR 354 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------ILNGDVAFKLYDTHGLPL 398 I +E++ F KTL+ G L D + L +L+GD AF+L+DT+G P+ Sbjct: 355 ERILRVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ GL +D+ FN A+ EQR RA+A + G T+ + T F Sbjct: 415 DLTLEMAQEAGL-DVDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFT 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY+ L + V +V+ G+ V E G +VEV+ D + Sbjct: 474 GYEELVSG-----------------------ANVIGLVKDGQKVNEVHEGDEVEVILDHS 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 P YAE+GGQ+ D G L++ DVQK + ++VH A V G L MS+ ++D + Sbjct: 511 PLYAESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEK 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R + HSATHL+H AL +LG Q GS P LRFD +++ ++ +++ I Sbjct: 571 WRHGATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALI 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I N+ V T + E+A A GA AL G Y ++VRVV + GG S LCGGTH Sbjct: 631 TNQAIDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V S+ EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV + Sbjct: 687 VGSSAEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPE 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSV 812 R+ ++ E + + + S ++ + ++ + +L++V Sbjct: 747 RISQLSERLKAAEKEIEVLRKAQLTARASEFIDSATEVNGIKTITLQLPDGTSGGDLRTV 806 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ +I+L + K K + + + + A D+ + + + G GGG Sbjct: 807 ATDIRNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYVN-GRGGG 865 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 +P MAQ G A + V L+ Sbjct: 866 KPDMAQGSGTAPEGAQRGFEAVKDLLQ 892 >gi|255007587|ref|ZP_05279713.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12] gi|313145280|ref|ZP_07807473.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12] gi|313134047|gb|EFR51407.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12] Length = 872 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D EA +W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASIWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI++ Q+ G +Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKSIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD ++ ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKATGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ + F+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMTVNTVE-FDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ ++ R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVNTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN I Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAP-DLGVAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + + ++ +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869 >gi|299148308|ref|ZP_07041370.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23] gi|298513069|gb|EFI36956.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23] Length = 872 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPDHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869 >gi|160886801|ref|ZP_02067804.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483] gi|156107212|gb|EDO08957.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483] Length = 872 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPDHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869 >gi|237719250|ref|ZP_04549731.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4] gi|293372256|ref|ZP_06618641.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f] gi|229451629|gb|EEO57420.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4] gi|292632698|gb|EFF51291.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f] Length = 872 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869 >gi|139436944|ref|ZP_01771104.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC 25986] gi|133776591|gb|EBA40411.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC 25986] Length = 878 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 353/893 (39%), Positives = 524/893 (58%), Gaps = 45/893 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR+ FL FF++ G +L PSSSL+P +DP+L+ N+GM FK + G++ Sbjct: 1 MTTAEIRSKFLNFFEERGLKLYPSSSLVP-DDPSLLLANAGMNQFKEYYQGKKTMKEIGA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVR ND+D +G RH +FFEMLG+FSFGG K++A A++L+TKEF L Sbjct: 60 ISCQKCVRT----NDIDCIGEDGRHLSFFEMLGDFSFGGVSKQQACAWAFELITKEFKLP 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY TV+ ED+E +W+ + G++ D I R+ +DNFW+ TGPCGPCSEI+FD GE Sbjct: 116 LDRLYFTVFTEDDETHDVWRSL-GVAEDHISRLGEDDNFWAAGPTGPCGPCSEIYFDMGE 174 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + +R++E WNLVF Q+++Q LP ++DTGMGLERMA ++Q Sbjct: 175 EVGCGSPDCKPGCDCDRFLEFWNLVFTQYDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 234 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANE 295 KT NYD DL +HLI+ E+++G Y+ ++ + R+I DH R+ F+I+DGILP NE Sbjct: 235 KTANYDGDLMQHLIKLGEEISGKTYDADDYSGASRSLRIIADHSRAVDFMISDGILPGNE 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GR YVLRR++RRA+ + RLLG + + + +MG AYPEL++ L++ + SE+ Sbjct: 295 GREYVLRRLLRRAVFHGRLLGIEGAFLTKFIDEVNAQMGEAYPELLKNVALVKGIVASEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF TLD G V LD L+ L + L GDVAFKL+DT G P+D+ +I G +D+ Sbjct: 355 ERFSTTLDNGRVYLDEALAALAEGAALPGDVAFKLHDTFGFPIDLTVEIAGTAGH-DVDM 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+Q++RARA++ G G+ +W L +K A++F GYD Sbjct: 414 DGFTACMEDQKARARANAKGDAWGSFNDVWVELSDKVAASEFDGYDNDVIEG-------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V AIV+ GE VE A +G+ VEVV D+TPFYAE GGQ GD G + Sbjct: 466 --------------AKVVAIVRNGESVESAAAGEDVEVVLDRTPFYAEMGGQQGDAGK-L 510 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + K G++ H A V G L ++ +D + R L NH+ATHLL Sbjct: 511 SAEGVVLTVADTKNHNGLYAHVAHVADGTLTVGAAVTAALDAERRGFLRRNHTATHLLDA 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HVSQ GS +TP+ LRFD TH + ++S +LK++ED VN I + PVVTR+M Sbjct: 571 ALKQVLGEHVSQAGSLVTPEHLRFDFTHFEALSSEQLKAVEDLVNQQIFASKPVVTRVMG 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A+GA AL G KY D VRVVSV ED S LCGGTH ++T EI L I+SESS Sbjct: 631 IDEAKAAGAVALFGEKYGDVVRVVSVGAED-QPFSRELCGGTHAANTAEIGLFKIISESS 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +RRIEA+T + A ++ + + + A+ LK V R+E + E R+ Sbjct: 690 TGSNVRRIEAVTSKGALDYMADRLALVDAAATALKCRVDEVPARMENLQAELRETSNKLK 749 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829 K + + +S ++ + + +++ +L++V D + +K+ ++ Sbjct: 750 KALTGGSSDAISSAIEGAVELDGYKLVVAELQGLEAADLRNVWDTVHQKVAGPVACVVAS 809 Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++++ ++L ++D + F+A ++ + A ++ G GGGRP+MAQ+GG N Sbjct: 810 VTEKGTPALLAAGSDDAVKAGFHAGNVIKQIAGLV-DGRGGGRPNMAQAGGKN 861 >gi|72162469|ref|YP_290126.1| alanyl-tRNA synthetase [Thermobifida fusca YX] gi|83305862|sp|Q47N66|SYA_THEFY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71916201|gb|AAZ56103.1| alanyl-tRNA synthetase [Thermobifida fusca YX] Length = 889 Score = 766 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 330/922 (35%), Positives = 500/922 (54%), Gaps = 63/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL FF+KNGH ++PS+SLI DPTL+ N+GMVPFK F GQ P Y Sbjct: 1 MKSAEIARRFLAFFEKNGHTVVPSASLIAE-DPTLLLVNAGMVPFKPYFLGQRTPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D+D VG+T RH +FF+MLGNFSFG YFKE+AI LAW+LLT Sbjct: 60 TSVQKCVRTI----DIDEVGKTTRHASFFQMLGNFSFGDYFKEKAIPLAWELLTTSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D RL++TVY +D+EA +W++ GL ++I R DNFWSM GPCGPCSEI+ Sbjct: 116 GFGFDPERLWVTVYLDDDEAATIWREKVGLPEERIQRRGKADNFWSMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 FD+G G G + +RY+E+WNLVFMQFE+ + P +IDTGMGL Sbjct: 176 FDRGPEY-GAEGGPVADEDRYLEVWNLVFMQFERGEGSGKEDYPILGELPSKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ERMA +LQ N Y+ D +++ + ++TG Y N V+ RVI DH+R+++ L+AD Sbjct: 235 ERMAAILQGVDNIYETDTLGRILRRAAELTGTTYGENERADVSLRVIADHVRTATMLVAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP-ALCTEMGSAYPELIQAKLLI 347 G+ P NE RGYVLRRI+RR++ RLL E MH L MG YPEL I Sbjct: 295 GVRPGNEKRGYVLRRILRRSIRNLRLLSGDESFHMHDLTAVAIDAMGDQYPELRADADKI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E++ F TL G L + + + + +G AF+L+DT+G P+D+ ++ Sbjct: 355 HSIIDAEEKNFADTLRAGTTLFNRAVRRTKETGGTVFSGADAFQLHDTYGFPIDLTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464 GL +D +F+Q ++ QR A+ + G + ++ +L E G T+F+GY Sbjct: 415 AEHGLK-VDEETFHQLMQRQRETAKRDAQAKKLGNADISVYGNLLETGGPTEFLGYTDSE 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+ GE A G +VE+V D+TPFYAE+ Sbjct: 474 S-----------------------EARVLGIIVNGESTGAARKGDQVELVLDRTPFYAES 510 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + + + DVQK +G+FVH V G + + ++ ID R + Sbjct: 511 GGQLADKGTITVDGRGVVDVEDVQKPIQGLFVHRGTVREGEVVVDDTVHAAIDTGRRASV 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 S +HSATHL+H AL LG Q GS P LRFD T KP+ + E+ +E+ VN+++ Sbjct: 571 SRSHSATHLIHSALRNTLGPSAGQAGSENQPGRLRFDFTSDKPLDATEIAQVEEEVNEVL 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 A+N+ V ++A+ GA A+ G KY +RVRVV + +S LCGGTHV++TG Sbjct: 631 ARNIEVQYLETTLDEALRMGALAMFGEKYGNRVRVVDMTE-----YSRELCGGTHVAATG 685 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ L+ ++ ESS+ +G+RR+EA+ G A + + + L+ LK + + R++ + Sbjct: 686 QLGLVKVLGESSVGSGVRRVEALVGLDALRRVSTESALVGQLSEQLKAPREELPQRIDSL 745 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817 R + + + ++ S + ++H + + + +++ + ++ Sbjct: 746 VSRLRAAEKEIERLRAAQVLQAAGKLAESARDHGNSRVVTHRVEDGTTADDMRKLALDVR 805 Query: 818 KKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++ ++ + G+ ++ V+ + E A +L ++A+ LGGGG GGRP + Sbjct: 806 GRLGEDRPAVVAIAGVPSDRPVVVVAINKEAQQAGLKAGELVGVAARALGGGG-GGRPDI 864 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ GG + D A+ V + Sbjct: 865 AQGGGSDVTAIDTALRLVEQRV 886 >gi|317133026|ref|YP_004092340.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] gi|315471005|gb|ADU27609.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] Length = 874 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 349/904 (38%), Positives = 519/904 (57%), Gaps = 49/904 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L FF+ GH LPS L+P D +L+ NSGM P K F GQ P + VTT Sbjct: 6 LNELREKYLAFFESKGHLRLPSFPLVPQGDNSLLLINSGMAPMKKYFLGQVTPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR D+++VG+ +RH T+FEMLGNFSFG YFK A W+ +TK L + Sbjct: 66 CQKCVRT----PDIEHVGKDDRHGTYFEMLGNFSFGDYFKHEACAWGWEFVTKVVKLPED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 ++Y+T+Y +D+EAF +W K G+ I+R+ DNFW +GPCGPCSEI+FD+GE Sbjct: 122 KVYVTIYLDDDEAFDIWTKEVGVDPSHIVRLGKEDNFWEHG-SGPCGPCSEIYFDRGEEH 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +RY+E WN+VF Q++ K + K +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPTCGVGCDCDRYVEFWNIVFSQYDSDGKGTYTPMAKPNIDTGMGLERLACVMQDVN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D +++++ + ++ G+ Y + ++ RVI DH+RS+ FL+ DG+LP+NEGRGY Sbjct: 241 NLFEVDTVQNIMKHTGRIAGVTYGEDAKADISLRVITDHIRSTVFLVGDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG EP + + + E +AYP+L++ + I+ +++E+ERF Sbjct: 301 VLRRLLRRAARHGRLLGIREPFLYQVAETVVHENAAAYPDLVEKQSYIQSVIKAEEERFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 T+D+GL LL+ ++ L +L+GD AFKLYDT G PLD+ DIL RG + +D F Sbjct: 361 ATIDQGLQLLEQRIAALPAGGVLSGDDAFKLYDTFGFPLDLTSDILEERGFS-VDADGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + ++EQR+RARA E S E T+F+GY+ L Sbjct: 420 KRMKEQRARARAARAAGMGAAWED---SKDEDTPETRFVGYEKL---------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V AI+ +GE V A G V VV D TPFYAE+GGQ+GDTG G+ Sbjct: 461 -------SCAAKVAAIITEGERVGLADQGSTVSVVLDTTPFYAESGGQVGDTGLLTAAGV 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +Q+TD +K G F+H V G L ++ +D RR + NHSA HLL AL + Sbjct: 514 CVQVTDCRKSPTGRFLHIGKVVEGSLSAGETMQAQVDAPRRRAVMRNHSAAHLLQAALRS 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV Q G + +RFD TH +T+ EL ++E VN I LPVVTR M E+A Sbjct: 574 VLGTHVQQAGQLVNDRHVRFDFTHFAALTADELAAVEKEVNTAILSALPVVTRTMAVEEA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 +GA AL KY D VRVV + G S LCGGTHV +TG+I L IVSE+S+ AG Sbjct: 634 KKTGAMALFSEKYGDVVRVVQM-----GDVSKELCGGTHVDNTGKIGLFRIVSETSVSAG 688 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK- 778 +RRIEA+TG L GQD +K A LK + + R ++ E R+ + + Sbjct: 689 VRRIEAVTGTNVLELLRGQDIAIKEAAQVLKAAPAELPQRAAQVAGELREKDRVIETLRG 748 Query: 779 ----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +Q++ + ++ ++ + E+D L+ + D +++ +I+L G++ Sbjct: 749 RIAAMQMDALLAAAKEVGVFRLITASLKEMDVDGLRMITDRVRESDPQAVIVLAGMA-GG 807 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++ + +A +L R +AK+ GGGG GGRP A +GG + ++ +A+ V Sbjct: 808 KVVFAAACGKEAVKNGAHAGNLLRTAAKITGGGG-GGRPDSATAGGRDASRVAEALQSVE 866 Query: 894 SFLK 897 + L+ Sbjct: 867 AGLE 870 >gi|60680248|ref|YP_210392.1| alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] gi|81316682|sp|Q5LHE6|SYA_BACFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|60491682|emb|CAH06434.1| putative alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] Length = 872 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 331/919 (36%), Positives = 483/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+A Q+ G +Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD ++ ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +++ F+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMT-VNVEEFDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN I Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTP-DLGVAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + + ++ +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869 >gi|325954950|ref|YP_004238610.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922] gi|323437568|gb|ADX68032.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922] Length = 869 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 326/919 (35%), Positives = 492/919 (53%), Gaps = 73/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL FFQ+ H ++ S+ ++ +DPTLMF NSGM FK F G P + Sbjct: 1 MKSKDIRKEFLNFFQQRNHLIVDSAPIVLKDDPTLMFNNSGMAQFKEYFLGNATPKSNRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDLD+VG+ HHT FEMLGN+SFG YFK+ AI AW+LLT + + Sbjct: 61 ADTQKCLRVSGKHNDLDDVGKDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTGTYGIG 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + ++Y+TV++ DE EA LWK+ ++ D+I+ DNFW M + GPCGPCS Sbjct: 121 KDQIYVTVFEGDEKDGTQLDQEALDLWKE--HIAEDRILLGNKKDNFWEMGDVGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + IEIWNLVFMQ++++ LP IDTGMG Sbjct: 179 EIHVDIRPEEERLAVDGKSLVNQDHPQVIEIWNLVFMQYQRRADGSLEPLPAKHIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+A VLQ KT+NYD D+F+ LI+ E+++G+ Y N + RV+VDHLR+ SF IA Sbjct: 239 FERLAMVLQGKTSNYDTDVFRPLIKKLEKISGITYGDNEITDIAIRVVVDHLRAVSFAIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y L EP + L P L EMG +PELI+ + + Sbjct: 299 DGQLPSNTGAGYVIRRILRRAISYGYRFLNLKEPFIYLLFPILKDEMGDFFPELIKQESI 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R E+ F +T++ GL L+ ++ +++ G V F+LYDT+G P D + I+ Sbjct: 359 VTGVIREEESSFLRTIEHGLNRLNQIIDQYQDTKVVPGHVVFELYDTYGFPAD-LSRIVV 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 ID F + +Q++R++ E + + + +F+GYD+L Sbjct: 418 EDHNFTIDEDGFEVEMSKQKARSKKA------TALETDDWVIVRENANEEFVGYDILSTE 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RKV G+ ++V D+TPFYAE+GG Sbjct: 472 VQITRYRKVKN----------------------------KKGEFYQLVLDKTPFYAESGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GDTG I ++++ + +K+ I VE+ E + +D R + N Sbjct: 504 QIGDTGLLISANEQIEVLNTKKENNLIIH---FVEQLPSNIEATFQAEVDSITRNETQKN 560 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL T+LG+HV Q GS + PD LRFD +H +T+ E+ +E VND I + Sbjct: 561 HSATHLLHEALRTVLGTHVEQKGSYVGPDYLRFDFSHFGKMTTEEIAEVEKIVNDRIVAS 620 Query: 647 LP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +P R + ++A++ GA AL G KY D VR++ S LCGGTHV +T +I Sbjct: 621 IPLDEKRNIPFDEAVSQGAMALFGEKYGDYVRLIKFGS------SVELCGGTHVKNTSDI 674 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L I SESS AGIRRIEAIT A L ++ +S+ LK + V+++ + Sbjct: 675 RLFKITSESSTAAGIRRIEAITSNAAIDVLKEAEKNYQSVLDTLKTK-SDAKKAVQQLLD 733 Query: 766 EYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E +L+ K Q + I + F++ ++++++ K L ++ Sbjct: 734 ENAQLKKQVEKFVAQQAKAEKENWKQQVKNINGIQFLAIK-TDLNTQSAKQNAIDLTNEL 792 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + +++ K S+ I + ++L+ + NA + R AK + G GGG+ +A +G Sbjct: 793 DNAFVVVATKDA-VKPSITISIAKNLVEEKQLNAGQIVREIAKNI-QGSGGGQAFLATAG 850 Query: 879 GPNGNKADQAIAGVASFLK 897 G + D+A+A +F++ Sbjct: 851 GKDVTGIDKALAQAETFVQ 869 >gi|116333833|ref|YP_795360.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367] gi|122269480|sp|Q03R43|SYA_LACBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116099180|gb|ABJ64329.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367] Length = 879 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 316/919 (34%), Positives = 483/919 (52%), Gaps = 63/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IR +L+FF+ GH + PS+SL+P +DP+L++ NSG+ K F+GQ P Sbjct: 1 MKELTSSQIRQMYLDFFKSKGHTIEPSASLVPKDDPSLLWINSGVATMKKYFSGQVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI AW+LLT Sbjct: 61 PRLTSSQKSIRT----NDIENVGKTARHHTLFEMLGNFSVGDYFKKEAIAWAWELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +LY+TVY +D +A W + G++ D I I DNFW + E GP GP SEIF Sbjct: 117 WFGWDPDKLYMTVYPKDTDAKDAW-EAVGVAPDHI--IAVEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 173 YDRGEAFNNLAADDPENYPGGENERYLEVWNIVFSQFNHEPDGTYKPLPRKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++ Q N++ DLF LI+ + ++ K+ + ++ +VI DH R+ +F I D Sbjct: 233 RVVSIFQNAKTNFETDLFMPLIEKTAALSAGKHYGANAEDDISFKVIADHARAITFAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP NEGRGYV+RR++RRA+ + LG + L+P + M + YPE+++ I Sbjct: 293 GALPGNEGRGYVIRRLIRRAIVNGQKLGIEGAFLDQLVPVVGQIMQAYYPEVLEQSDYIA 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE++RFG+TL GL LL+ +++ L + + G AFKLYDT+G P+++ ++ Sbjct: 353 KVVRSEEDRFGETLTDGLNLLNSLIADLKQQGGNQIAGADAFKLYDTYGFPVELTEEYAD 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ +D F +++Q+ RAR + + L ++++GY L Sbjct: 413 DQGIT-VDEAGFKAEMQKQKDRARNARGKQKAMGLQHDL--LINVKTPSEYVGYTQL--- 466 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +S + +V E+V+ SG E +FD TPFYAE GG Sbjct: 467 --------------------ATTSKLTVLVAGDELVDHVTSG-TAEAMFDVTPFYAEMGG 505 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + + A H + + T + L +D ++ Sbjct: 506 QVADKGDILDEAGHVVAHVADVQHAPNGQNLHTLTVVAPMETGATYQLKVDTIFHSKVEK 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL + G H Q GS + D LRFD TH + A+L E VN I + Sbjct: 566 NHTATHLLDKALREVFGEHTQQAGSLVEGDYLRFDFTHFGQVDPADLAKAEALVNQKIFE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPV T + E A GA AL KY VRVVS G + CGG HV +T EI Sbjct: 626 ELPVTTVETDIESAKKMGAIALFSEKYGKVVRVVS-----AGDFVTEFCGGNHVKNTNEI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L I SES + AG+RRIEA+T A ++L DE L ++ + LKV+Q + +V+ + Sbjct: 681 GLFKITSESGVGAGVRRIEAVTSAAAYAYLHDHDEILNAVGADLKVTQVDEIEQKVQALQ 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + + L+ A + +L ++ + +S + +L+++ D + + Sbjct: 741 AQVKALEQQQATLEGKLASQEAGAVFDHVTTAGNYQLISGTVQVSKMDQLRALADTWRDQ 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L G KA++++ V+ D + A DL + + + GG GGGRP++AQ+GG Sbjct: 801 ALSDVLVL-GAEVNGKANLIVAVSADKQKQVKAGDLIKAISPKINGG-GGGRPNLAQAGG 858 Query: 880 PNGNKADQAIAGVASFLKK 898 N A+ A +L + Sbjct: 859 KNPAGLPDAMTAAADWLAE 877 >gi|288871667|ref|ZP_06118467.2| alanine--tRNA ligase [Clostridium hathewayi DSM 13479] gi|288862560|gb|EFC94858.1| alanine--tRNA ligase [Clostridium hathewayi DSM 13479] Length = 813 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 323/848 (38%), Positives = 475/848 (56%), Gaps = 46/848 (5%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R Sbjct: 1 MFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129 G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD RLY +V Sbjct: 61 TG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIRWSWEFLTEVVGLDPDRLYPSV 116 Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 Y ED+EAF +W K G++ ++I R DNFW GPCGPCSEI++D+GE G PG Sbjct: 117 YLEDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPG 175 Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247 E +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ + +D+D Sbjct: 176 CTVGCECDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVVVQDVDSIFDVD 235 Query: 248 LFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 K L+ ++ +Y+ + V+ R+I DH+RS +F+I+DGI+P+NEGRGYVLRR++ Sbjct: 236 TIKALLNRVAELARTEYQKDASVDVSLRLITDHVRSCTFMISDGIMPSNEGRGYVLRRLL 295 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA + RLLG + L + YPEL + K +I + L E+++F +T+D+G Sbjct: 296 RRAARHGRLLGIEGRFLAELSRTVIELSKDGYPELEEKKAMILKVLTEEEDKFNRTIDQG 355 Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 L +L + + +L+G+ AFKLYDT+G PLD+ ++IL + + ID F +A++ Sbjct: 356 LAILSEMEEQMSAAGKTVLSGEDAFKLYDTYGFPLDLTREILEEKHFS-IDEDGFKKAMQ 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR +ARA + + + T+F+GYD L Sbjct: 415 EQREKARAARKTTNYMGADVTVYQSIDPALTTEFVGYDRL-------------------- 454 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + A+ + ++VE G+ +V ++T FY GGQ GD G + + Sbjct: 455 ---VCDSKITALTTETDLVEALTDGETGTIVTEETCFYGTMGGQQGDKGVIVSANGEFSV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D G H +++G+ + + L + ++R NHSATHLL AL T+LG Sbjct: 512 EDTIHLQGGKVGHVGKMKKGMFQIGDVVTLKVCEESRMNTGKNHSATHLLQKALRTVLGE 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + D LRFD TH +T E+K +E VN+ I + L V T +M+ ++A SG Sbjct: 572 HVEQAGSYVDEDRLRFDFTHFSAMTPEEIKKVECLVNEKIKEALNVKTEVMSLDEAKKSG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY + VRVV + G S+ LCGGTH+S+TG I I+SE+ I AG+RRI Sbjct: 632 AMALFGEKYGENVRVVKM-----GDFSTELCGGTHISNTGVIGSFKILSETGIAAGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+TG + + +L A K + + R+E + EE + L + K K +L Sbjct: 687 EALTGDGLMKYYQEAETELHEAAKAAKATPQTLAARIEAMLEEIKTLHSENEKLKSRLAK 746 Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L +I V ++ +VD L+++ D L+ K+ G+I+L + + K ++ Sbjct: 747 DSLGDVMDQVKEIGGVKVLAAKADDVDMNGLRNLGDQLKDKLGEGVIVLASVL-DGKVNL 805 Query: 839 LIVVTEDL 846 + TE+ Sbjct: 806 MATATEEA 813 >gi|29349403|ref|NP_812906.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482] gi|41018213|sp|Q8A0M6|SYA_BACTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29341312|gb|AAO79100.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482] Length = 872 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 326/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN +++Q+ RAR + W +L+E G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNAEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY +RVRV+ S CGG HV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + + L S + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 851 AGGKNTDGLNAAIEKVLEL 869 >gi|227503536|ref|ZP_03933585.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] gi|227075572|gb|EEI13535.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] Length = 896 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 320/925 (34%), Positives = 488/925 (52%), Gaps = 66/925 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61 IR F + F +GHE++PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 5 THEIRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQGLA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW+LLTK+ Sbjct: 64 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVADG 119 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSEI+ Sbjct: 120 GFGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSEIY 179 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G G G + RY+EIWNLVFMQ E+ + LPK +IDTG+G+ Sbjct: 180 YDRGSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFKIVGELPKKNIDTGLGI 238 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLI 286 ER+A +LQ N Y+ DL + +I +E++TG Y + + RV+ DH R+ LI Sbjct: 239 ERVACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQQDNIRFRVVADHSRTGMMLI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + Sbjct: 299 LDGVTPGNEGRGYILRRLLRRIIRSAKLLGAEGATMERFMNTVMDTMTPSYPEIADNRER 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------ILNGDVAFKLYDTHGLPLDI 400 I +E++ F KTL+ G L D + L +L+GD AF+L+DT+G P+D+ Sbjct: 359 ILRVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPIDL 418 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D+ FN A+ EQR RA+A + G T+ + T F GY Sbjct: 419 TLEMAQEAGL-DVDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGY 477 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + L + V +V+ G+ V E G +VEV+ D +P Sbjct: 478 EELVSG-----------------------ANVIGLVKDGQKVNEVHEGDEVEVILDHSPL 514 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+ D G L++ DVQK + ++VH A V G L MS+ ++D + R Sbjct: 515 YAESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEKWR 574 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + HSATHL+H AL +LG Q GS P LRFD +++ ++ +++ I N Sbjct: 575 HGATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALITN 634 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N+ V T + E+A A GA AL G Y ++VRVV + GG S LCGGTHV Sbjct: 635 QAIDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTHVG 690 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 S+ EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV + R+ Sbjct: 691 SSAEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPERI 750 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMD 814 ++ E + + + S ++ + ++ + +L++V Sbjct: 751 SQLSERLKAAEKEIEGLRKAQLTARASEIIDSATEVNGIKTITLQLPDGTSGGDLRTVAT 810 Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 ++ +++ +I+L + K K + + + + A D+ + + + G GGG+P Sbjct: 811 DIRNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYVN-GRGGGKP 869 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 MAQ G A + V L+ Sbjct: 870 DMAQGSGTAPEGAQRGFEAVKDLLQ 894 >gi|53712054|ref|YP_098046.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46] gi|253563907|ref|ZP_04841364.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5] gi|265765389|ref|ZP_06093664.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16] gi|59798506|sp|Q64YB4|SYA_BACFR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52214919|dbj|BAD47512.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46] gi|251947683|gb|EES87965.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5] gi|263254773|gb|EEZ26207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16] Length = 872 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 331/919 (36%), Positives = 483/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+A Q+ G +Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD ++ ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +++ F+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMT-VNVEEFDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN I Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGVAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + + ++ +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869 >gi|256419492|ref|YP_003120145.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588] gi|256034400|gb|ACU57944.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588] Length = 871 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 328/919 (35%), Positives = 508/919 (55%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF GH ++PS+ ++ NDPTL+FTN+GM FK+ F G P ++ V Sbjct: 1 MTAPEIRQQFLDFFASKGHHIMPSAPIVVKNDPTLLFTNAGMNQFKDYFLGNRAPAWKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT+ + L Sbjct: 61 ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIDWSWELLTEVYKLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ D+EAF+ WKK + D+I+ DNFW M +TGPCGPCS Sbjct: 121 KDRLYVTVFEGDAKENLEKDQEAFEFWKK--HVPEDRILMGNKKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G + + + IEIWN VFMQF + + LP +DTGMG Sbjct: 179 EIHVDCRPDSERALVDGKTLVNADDPQVIEIWNNVFMQFNRLKDRSLESLPAKHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLI 286 ER+ V+Q KT+NYD D+F I +E++TG+KY + V RVI DH+R+ SF I Sbjct: 239 FERLVRVIQGKTSNYDTDVFSGTIGHTEKLTGLKYGCTDSKPDVAFRVIADHIRAISFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L + +PL+ L+P L + + +PEL+Q Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAVRYYFSFLNWKKPLLQDLVPVLAQQFANVFPELLQQVD 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +++ + E+ F +TLD G+ ++ + + + +G AF+LYDT+G P D+ I Sbjct: 359 FVQKVVFEEENNFLRTLDSGIRRIEDFMGAAKEKSV-DGKTAFELYDTYGFPYDLTSLIA 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G + D F+ A++EQ+ R+RA + + +++ + + F+GY+L Sbjct: 418 SENGFSA-DKEGFDAAMKEQKDRSRAATE------LDMGDWTVLNENAESVFVGYELSET 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RK+ +A ++ ++V QTPFYAE+G Sbjct: 471 ETSVAKYRKI----------------------------KAKGKEQYQLVLSQTPFYAESG 502 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GDTG +Q+TD +K+ I V++ + I+ NR ++ Sbjct: 503 GQVGDTGILTFGAETIQVTDTKKENNLIVH---FVDKLPANITTTAKAVINKNNRLSTTM 559 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH AL +LG+HV+Q GS + P+ LRFD +H ++ EL IE+ VN+ I Sbjct: 560 NHSATHLLHAALRQVLGTHVAQKGSLVNPEYLRFDFSHFAKVSDEELAQIEEIVNEKIRA 619 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+PVV + + +E+A+ GA AL G KY D VRVV ++ +S LCGGTHV STGE+ Sbjct: 620 NIPVVIKELPKEEALKLGAMALFGEKYGDVVRVVVMDP----GYSVELCGGTHVGSTGEL 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + SE ++ AG+RRIEA+TG+ A + + Q ++LK + + LK + ++V V+ + Sbjct: 676 GIFKFTSEGAVAAGVRRIEAVTGRNALAFVNAQLQQLKDIKTALK-NPKDIVAVVDNLIN 734 Query: 766 EYRKLQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + L+ K + + +NF+ I+ +++ LK + L+ +I Sbjct: 735 DKAALEKRVEALELEKVRQLSAGLQAEVENVHGINFLGKIVDVNNAEALKQLCFTLKTQI 794 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARL-SAKVLGGGGGGGRPHMAQS 877 + + +L + KA+V ++++++L+ A + + A ++ GGG GG+ A + Sbjct: 795 DNHVFILAA-NIGGKANVALMISDNLVAEKGLEAPKIIKEKIAPIIKGGG-GGQKSFATA 852 Query: 878 GGPNGNKADQAIAGVASFL 896 GG + DQ I V + L Sbjct: 853 GGQEAGQLDQVITQVKAML 871 >gi|91202499|emb|CAJ72138.1| strongly similar to alanyl-tRNA synthetase [Candidatus Kuenenia stuttgartiensis] Length = 885 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 344/918 (37%), Positives = 508/918 (55%), Gaps = 56/918 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR FL FF+K H + P SL+P D TL+FT +GM FK++F G+ + + Sbjct: 1 MNTGEIRNKFLTFFEKKSHVIWPGDSLVPQGDATLLFTGAGMNQFKDMFLGKGRLNIKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G DL+NVGRT HHTFFEMLGNFSFG YFK I AW+ L +E L Sbjct: 61 TTCQKCLRTG----DLENVGRTASHHTFFEMLGNFSFGDYFKRETIAWAWEFLVQELRLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSEIF 176 + +L+++VY +D E++++W+K + KI NDNFW GPCGPCSEIF Sbjct: 117 EEKLFVSVYKDDPESYEIWEKHIRILKSKIYSYGENDNFWPANAPAQGPNGPCGPCSEIF 176 Query: 177 FDQGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 +DQG + G + + +R++EIWNLVF QF+++ LP ++DTGMGLERMA Sbjct: 177 YDQGAGVGCGREECEPACDCDRFVEIWNLVFTQFDRKEDGRLEPLPNKNVDTGMGLERMA 236 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292 V+Q N+DID+F +I++ E +T ++Y R I DH+++S F IADG+LP Sbjct: 237 RVMQGVPTNFDIDIFAPVIKSIEDITHLRYHDKKENAVCMRRIADHVKASIFCIADGVLP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYV RR++RRA+ LG E + L+P + M YP++ Q + I ++ Sbjct: 297 GNEGRGYVERRLLRRAIRDGAQLGLKECFLYKLVPIISDLMQDYYPDIKQRRENIARIIK 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE+E+F +TL+ G V L ++ + K++I L G AFKLYDT+G PLD+ + IL G Sbjct: 357 SEEEKFLETLELGTVRLKELMDTMQKNKIKELPGKEAFKLYDTYGFPLDMTELILKEHGF 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + +D L+ QR +AR+ S G +KE T F+GY+ Sbjct: 417 S-MDSAGVEVELKRQRMQARSSSSMTGQVFDAGFLGKIKEISKGTTFLGYE--------- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + AIVQ ++E+A +G +V +V DQTPFY E+GGQ+GD Sbjct: 467 --------------KDSCRARIIAIVQGDYLIEKAEAGSEVSIVLDQTPFYGESGGQIGD 512 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG +G + ITD +K I + +GI+RT + ID R + NH+AT Sbjct: 513 TGILESEGSHICITDTKKNDSFIIH-IGKITKGIVRTGDMIDARIDTHRRGLIKRNHTAT 571 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH L ++G H Q GS ++PD LRFD H +T E+ IED VN+ I +N V Sbjct: 572 HVLHWVLRNVIGRHAEQAGSMVSPDRLRFDFHHFSSLTKEEINRIEDLVNEKIMENALVS 631 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + ++A +GA AL G KY +RVR+VS+ G S LCGGTH+++TGEI I Sbjct: 632 VKEQTLQEARNAGAVALFGEKYEERVRMVSI-----GDFSKELCGGTHINNTGEIGPFRI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V ESS+ AGIRRIEAITG A + ++E ++ L L + ++ + +E+ E +KL Sbjct: 687 VGESSVAAGIRRIEAITGISALTRDREKEEIVQELCGILNACEEDLSSKTQELLNEVKKL 746 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 K+K + +E + +++ VN ++ I + +++ D L K + + Sbjct: 747 HKELHKQKQKELLEKIDSLSVTAKEVSGVNIITKRIDNASADDMRRTADMLMKSEKETAV 806 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + + ++ + T +A +++ AK++GGGG GGRP MAQ+GG K Sbjct: 807 ALGSVLNGRVIVIISLSTGLASRGLHAGSISKEVAKIVGGGG-GGRPEMAQAGGQVVGKL 865 Query: 886 DQAIAGV-----ASFLKK 898 D+A+ L+K Sbjct: 866 DEALDFAEMLFSKEILQK 883 >gi|282896478|ref|ZP_06304498.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9] gi|281198584|gb|EFA73465.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9] Length = 878 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 327/905 (36%), Positives = 506/905 (55%), Gaps = 49/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ + H+ LPS+SL+P DPT++ T +GM+PFK IF GQ ++ T Sbjct: 7 SGNHIRQLFLDFYTQRQHQPLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTAEFKRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L Sbjct: 66 TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V+++D+EAF +W++ G+ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 122 ERLVVSVFEDDDEAFNIWQQQIGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ N Sbjct: 182 L-GDDHIDLEDDTRFIEFYNLVFMQYNRDISGNLTPLQNKNIDTGMGLERMAQILQKVPN 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ + Y ++ + +VI DH+R+ +IAD I +N GRGY Sbjct: 241 NYETDLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADEIRASNVGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + + + S YP L Q + +I+ L+ E+ F Sbjct: 301 ILRRLIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQRETVIKAELQREEGNFL 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTLDRG LL ++ + + +++G+ AF LYDT+G PL++ Q+I + L+ +D+ Sbjct: 361 KTLDRGEKLLGEIIQEVKQQGLTVISGESAFTLYDTYGFPLELTQEIAQEQSLS-VDVEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN + +Q RA+A + T + L E +T+FIGY L Sbjct: 420 FNTEMHKQIERAKAAHETIDL-TVQGSLDKLAEHIHSTEFIGYRQL-------------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ + ++ +G A G V++V D+TPFYAE+GGQ+GD G G Sbjct: 465 ---------ATTAKIAVLLVEGIAQATATGGTNVQIVLDKTPFYAESGGQIGDQGYISG- 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L + KK F+H +ERG ++ S+ +D NRR+ NH+ATHLL AL Sbjct: 515 DGLLIRIEDVKKESDFFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+ +SQ GS ++ D LRFD S+ +T E++ +ED VN I+Q P I+ Sbjct: 575 KKIVDEGISQAGSLVSFDRLRFDFNCSRSLTEDEVQQVEDLVNAWISQAHPAQVEILPLP 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY D VRV+ S LCGGTHV++TGEI + I+S+ + Sbjct: 635 EAKARGAVAMFGEKYGDHVRVIDFPG-----VSMELCGGTHVNNTGEIGVFKIISQVGVS 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA++G +L +D+ +K L++ KV + R+ + E R + + Sbjct: 690 AGIRRIEAVSGAAVLDYLNIRDQVVKDLSNRFKVKPEEIPDRITILQTELRHNEKVIQNL 749 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + + + ++++D + LK + L +KI +G ++L I + Sbjct: 750 KSQLAIVKSDSLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIVNGAVVLASIPE 809 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + + ++ A AK+ GGGG GG+P++AQ+GG + +K QA+ Sbjct: 810 PGKVSIVAAFSSHVNEKGLQAGKFVGNIAKLCGGGG-GGKPNLAQAGGRDASKLPQALES 868 Query: 892 VASFL 896 L Sbjct: 869 AKDNL 873 >gi|298384931|ref|ZP_06994490.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14] gi|298262075|gb|EFI04940.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14] Length = 872 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 326/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN +++Q+ RAR + W +L+E G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNTEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDSALREVLGKHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY +RVRV+ S CGG HV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + + L S + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 851 AGGKNTDGLNAAIEKVLEL 869 >gi|124514184|gb|EAY55699.1| Alanyl-tRNA synthetase [Leptospirillum rubarum] Length = 891 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 356/909 (39%), Positives = 511/909 (56%), Gaps = 47/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL +F +GH+++PS+SLIP DPTL+FTN+GMVPFK+IF G EK + Sbjct: 1 MDSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI AW LTKE +D Sbjct: 61 VSIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +R L++TVY ED+EA +LW++++ + D+I+R+ DNFW M +TGPCGPCSEI DQGE Sbjct: 121 RRLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGE 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++EIWNLVFMQ+++ + LP+ SIDTGMGLER++ V+Q+ Sbjct: 181 RFSCGSPDCKVGCDCDRFLEIWNLVFMQYDRNAEGVLSPLPRPSIDTGMGLERLSAVVQK 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296 K +NY+ DLF LI+ E + + Y +RVI DHLRSS FL+ +GI P+NEG Sbjct: 241 KDSNYETDLFMPLIRTIETYSRVHYGAGEGSLDHAYRVIADHLRSSVFLLHEGIAPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RG+VLRRI+RRA+ + R LG P++ L ++ M YPEL + I++ LR E+ Sbjct: 301 RGHVLRRIIRRALLFGRELGLPHPILPSLAESVAEMMAKPYPELRTSLSRIQDVLRLEEG 360 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL+ GL L+ +L L ++++ G++ F L+DTHG PLDI++D +G +D Sbjct: 361 RFHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQG-ILLD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + +EEQR R R+ +G E + + +F GY+ Sbjct: 420 YKGFEEKMEEQRERGRSSW----TGKKEDFPLPSDKLKKSVEFQGYEKT----------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V ++ E V+E +G+ V VV D+T FY E GGQ+GD G Sbjct: 465 ------------SMQGTVLFLLNGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDL 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 IG +++ +K G V V G + ++ +D + R+ +H+ATHLLH Sbjct: 513 IGPFGYIRVRGAKKPYPGWIVLSGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLH 572 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LG V Q GS + P+ LRFD T +P++ L ++E VN I +N PV M Sbjct: 573 AALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDASEM 632 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A+ GA A KY DRVRVV V S LCGGTHV STG+I L I+ E+ Sbjct: 633 EKSKALDMGALAFFDEKYGDRVRVVQVPG-----TSVELCGGTHVRSTGQIGSLLILQET 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AGIRRIEA+ G A + ++LK L L+ ++ + I E Q Sbjct: 688 GVAAGIRRIEAVAGPLAYQKAVTWRQELKDLRELLEAGTSSLEEKTRTILRENAACQKEI 747 Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K L+ ++ +S D +EL+ MDA++ KI SG I+L+G Sbjct: 748 QSLKSRLFSLEEKHSRKETLEVEGHQLAVLHVSLDDPRELRVRMDAIKSKIPSGAILLIG 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + L + DL + F + A + GG GGG+P A+ GGP + + Sbjct: 808 ETTD-KLAFLGWTSSDLGEAFPISQWVKTLAAEV-GGKGGGKPSWAEGGGPKPDDVGGFL 865 Query: 890 AGVASFLKK 898 S +++ Sbjct: 866 QSAKSRMEE 874 >gi|268680286|ref|YP_003304717.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946] gi|268618317|gb|ACZ12682.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946] Length = 846 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 347/895 (38%), Positives = 497/895 (55%), Gaps = 56/895 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 +R FL+FF++ GH+++ SS L+P +D TL+FTN+GMVPFK++FTG+ TT Sbjct: 2 DVRAEFLKFFEQKGHKVIESSPLVP-DDATLLFTNAGMVPFKSVFTGEVPRPNPPRATTC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L + + Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISHAWEFVTEVLKLPKEK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 L++TV++ D+EA ++W K + A +I+R DNFW M +TGPCGPCSEIF DQG E Sbjct: 121 LWVTVHESDDEAEEIWIK--HIDASRIMRFGDKDNFWQMGDTGPCGPCSEIFIDQGAENF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ V + +N Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERDKEGNLHPLPKPSIDTGMGLERVTAVQEGVFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YD LF L ++ G Y ++RVI DH+RS +FL+A G+ GRGYVLRR Sbjct: 239 YDSSLFIPLTSKVAELCGKAYAYKTGASYRVIADHIRSVAFLVAQGVSFGRVGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M LL LC MG YP L+ K + E +++E+E F T+ Sbjct: 299 ILRRAVRHGYLLGLREPFMYKLLDTLCDLMGKQYPYLVAKKEGVAEQIKNEEESFFTTIA 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 GL L + L + + +G+VAFKLYDT+G PLD+ D+L +GL+ ++ F + Sbjct: 359 SGLELFEKELPNT--KAMFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VNEAEFEALMA 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ++R++A G G T + L EK+G F+GY Sbjct: 416 EQKARSKASWKGSGDKATHGEFKPLLEKFGLNTFVGYTQKE------------------- 456 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 V + V A++ + + VE + V+F++TPFYA +GGQ GD G G G L Sbjct: 457 ----VKTKVLALLDENFKEVESL--DENGWVMFEKTPFYAMSGGQCGDEGSIEGYGKVLD 510 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + L + L +D ++ +HSATHLLH AL TILG Sbjct: 511 TKKFFDLNLSLV-----ELEKPLHVNDEVALVVDLSR-LEIEKHHSATHLLHSALRTILG 564 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV+Q GS + + LRFD +H K ++ EL +IE VN IIA + T++MN E+A S Sbjct: 565 DHVAQAGSLVEKERLRFDFSHPKALSHEELSNIEAFVNRIIASGVAGETKLMNIEEAKKS 624 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY VRVVS G S LCGGTHV + I +I+ ES + AG+RR Sbjct: 625 GAMALFGEKYGSEVRVVSF-----GDASIELCGGTHVENVANIGSFFILKESGVSAGVRR 679 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEAI G A ++ +++++ V + + + EE + L+ Q Sbjct: 680 IEAICGGAALAYAQALRTEMEAIKE--SVKHKEPLIGINRLKEEIKSLKTEVESLNAQAG 737 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 S H VN + I+ + + ++K+ +D L+ + +S ++L+ + KE K + V Sbjct: 738 KAVESLH----VNGVELIVDVLGAGDIKARIDDLKNEKESVAVLLLQV-KEDKVLIAAGV 792 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A + A ++GGGG GGR AQ+GG + ++ ++A ++ K Sbjct: 793 KNAP---IKAGAWIKEIAPIVGGGG-GGRDDFAQAGGKDASRVEEAKNAALAYAK 843 >gi|260171843|ref|ZP_05758255.1| alanyl-tRNA synthetase [Bacteroides sp. D2] gi|315920155|ref|ZP_07916395.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694030|gb|EFS30865.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 872 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 325/919 (35%), Positives = 484/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEYLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKASGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL + ++I FN+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENEMT-VNIDEFNEEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN + Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARV 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D+VRV+ S CGGTHV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDKVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIMSESSVAAGVRRIEAYTGARVEELLDTVQDTLSDLKALFNNAP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSIDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869 >gi|86134548|ref|ZP_01053130.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152] gi|85821411|gb|EAQ42558.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152] Length = 873 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 335/919 (36%), Positives = 487/919 (52%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR TFL+FFQK H ++PS+ ++ +DPTLMF NSGM PFK F G P + Sbjct: 1 MKSQDIRATFLDFFQKKSHLVVPSAPMVTKDDPTLMFVNSGMAPFKEYFLGNATPKKNRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D Sbjct: 61 TDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D EA+ +WK+ ++ D+I++ DNFW M E GPCGPC Sbjct: 121 KDILYVTVFEGSEDADQLNMDTEAYDIWKEY--IAEDRILKGNKKDNFWEMGEQGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +E+ + +EIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHVDIRSAEEKAKLDGRTLINEDHPQVVEIWNLVFMQYNRKANGTLEELPNKHIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLI 286 G ER+ VLQ +NYD D+F +I+ +T Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMVLQNVQSNYDTDVFTPIIREIGTITNTSYGKNEKQDIATRVISDHVRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAVRYGFTFLNKKEPFIYRLVSILSDKMGKAFPELKSQKQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE ++ E+ F +TLD+GLVLLDG++ + EI +GD F+LYDT G P+D+ IL Sbjct: 359 LIENVIKEEETSFLRTLDQGLVLLDGIIENSKSKEI-SGDKVFELYDTFGFPIDLTALIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G +D F + L++Q++R+RA S + W L + +FIGYD L Sbjct: 418 SEKGYT-LDEKGFEEELQKQKNRSRAA-----SEMSTDDWTILIDDAVE-EFIGYDFLEA 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RK V G+ ++VF+ TPFY E G Sbjct: 471 NVKLTRYRK---------------------------VTSKKDGEMYQLVFNLTPFYPEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + KK + +H A + + + +D + R + Sbjct: 504 GQVGDKGYLEDTHGDVVYILDTKKENNVIIHFA--KNLPQNLDANFKAVVDEKQRYRTEC 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+HV Q GS + LRFD +H +T+ EL+ +E+ VN I+ Sbjct: 562 NHTATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKLTTEELQDVENFVNARISG 621 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 LP+ R + E AIA GA AL G KY D VR + S LCGGTHV +TG+ Sbjct: 622 KLPLEESRNITMEKAIADGAMALFGEKYGDTVRAIKFG------KSIELCGGTHVKNTGD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SE ++ AGIRRIEAIT + + L + L + N V V+++ Sbjct: 676 IWHFKIKSEGAVAAGIRRIEAITNDAVKDFYFDNNRTLFEIKDLLN-NTKNPVKAVQKLQ 734 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E +LQ + + +I V F++ + ++D+ +K++ +L K+ Sbjct: 735 DENTELQKQVEQLLKEKAQNLSGEIKNQLQEINGVQFLATKV-DLDANGIKNLAFSLGKE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 Q+ ++ +KA + ++++L + +NA + R K++ GGG GG+P A + Sbjct: 794 HQNLFLLFASAPSNEKALLTCYISKELANERGYNAGTVVRELGKLIHGGG-GGQPFFATA 852 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N +A+ +L Sbjct: 853 GGRNPGGIPKALEKAKDYL 871 >gi|301161775|emb|CBW21315.1| putative alanyl-tRNA synthetase [Bacteroides fragilis 638R] Length = 872 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 331/919 (36%), Positives = 483/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+A Q+ G +Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD ++ ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +++ F+ +++Q+ RAR + W LKE G T+F+GYD Sbjct: 419 ILRENGMT-VNVEEFDVEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + ++V D TPFYAE Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN I Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV++T Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + L L + + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGVAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K E L + +I + + + + ++ +K++ L+ Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869 >gi|254882808|ref|ZP_05255518.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA] gi|254835601|gb|EET15910.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA] Length = 872 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ ++ FN +++Q+ RAR + W ++KE G T F+GYD Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + ++I D +K+ ++ ++ ++ +D + R Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHV +T Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SESS+ AG+RRIEAITG + + + L L + + ++ + + Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K L + +I V + II + + +K + L+ Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + +++G K + ++++EDL+ NA L R +AK++ GG GGG+PH A Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869 >gi|294778219|ref|ZP_06743645.1| alanine--tRNA ligase [Bacteroides vulgatus PC510] gi|294447847|gb|EFG16421.1| alanine--tRNA ligase [Bacteroides vulgatus PC510] Length = 872 Score = 765 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ ++ FN +++Q+ RAR + W ++KE G T F+GYD Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + ++I D +K+ ++ ++ ++ +D + R Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHV +T Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SESS+ AG+RRIEAITG + + + L L + + ++ + + Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K L + +I V + II + + +K + L+ Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + +++G K + ++++EDL+ NA L R +AK++ GG GGG+PH A Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869 >gi|320120352|gb|EFE28354.2| alanine--tRNA ligase [Filifactor alocis ATCC 35896] Length = 881 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 328/908 (36%), Positives = 519/908 (57%), Gaps = 50/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +V+ IR ++L+FF H + PS L+P ND +L+ N+GM P KN F G EKP + Sbjct: 6 KSVNEIRKSYLDFFASKDHYVSPSFPLVPINDNSLLLINAGMAPLKNYFMGIEKPPKNRM 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +T QKC+R G D++NVG T RH TFFEMLGNFSFG YFK AI AW+ +T ++ Sbjct: 66 STCQKCIRTG----DIENVGITARHATFFEMLGNFSFGNYFKNEAIAWAWEFVTTVLEIS 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG 180 L++TVY+ED+EA+ +W+ G+S D+I+R+ DNFW + TGPCGPCSEI+ D+G Sbjct: 122 PELLWVTVYEEDDEAYNIWRDKIGVSEDRIVRLGKEDNFWEIGTGTGPCGPCSEIYIDRG 181 Query: 181 ECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + +R++E WNLVF QF ++ + LP +IDTGMGLER+A +LQ Sbjct: 182 AEFGCDDEHCKPGCDCDRFLEFWNLVFTQFNKEEDKTLTPLPHPNIDTGMGLERVACMLQ 241 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 + +DID + +I+ E++ +KY + ++ R+I DH+R+ +FLI DG++P+NEG Sbjct: 242 GVDSIFDIDTMQDIIRKIEELLHVKYREDSKKDISIRIITDHIRAVTFLIGDGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG P + L+ + AYPEL + + I + ++ E++ Sbjct: 302 RGYVLRRLLRRAARHGKLLGMDRPFLHELMSKVIEINADAYPELKEKQEYIYKVIKVEED 361 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +T+ +GL +L ++ + + +++ + AF+LYDT G P D+ ++IL G + + Sbjct: 362 KFEETIYQGLEILREEMNRMKDTNETMMSPEKAFRLYDTFGFPFDLTKEILTEEGFSVEE 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + +E+QR+RAR+ + +K SL T F GY Sbjct: 422 EGF-YEEMEKQRNRARSARKDSDNEGWKKENISL--DLEPTVFEGYTSF----------- 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + +IVQ+ +++ A G K + ++TPFYAE+GGQ+GD G Sbjct: 468 ------------TEEASIISIVQEDALIQTAKKGDKAIFILNRTPFYAESGGQVGDIGIL 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ + +K + +H V G + S++ I+ R + NHSATHLLH Sbjct: 516 ESQRGKVSVIQTKKGNNDVIMHIGEVIEGEISVGDSMIAEINESRRNETMRNHSATHLLH 575 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LG+HV+Q GS +TP+ +RFD TH + +T EL+ +E VN I L V + M Sbjct: 576 KALRTVLGNHVTQAGSFVTPERVRFDFTHFEAMTKEELQKVELAVNGAIYSYLEVTCQEM 635 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E A GA AL G KY VRVVS+ G +S LCGGTHVS+T EI + IVSES Sbjct: 636 AIEKAKEKGAMALFGEKYGQTVRVVSM-----GDYSVELCGGTHVSNTSEIGMFKIVSES 690 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TG + L Q+ L+ L+ +K Q + RVE E ++ + Sbjct: 691 GVASGVRRIEAVTGMKVYEVLKKQEGLLEDLSEKMKTKQDQLSERVEHQIVELKEAKKEI 750 Query: 775 AKRK---LQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K LQ N++++ H ++D+ +++ VDS +L+++ +L K + +++L Sbjct: 751 AQLKNTILQENMDNIMSHCIDVSDLKLLTNEFENVDSDDLRNIAQSLVDKDDTLVVVLAS 810 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K++K + + + ++ +++ + +L R AK+ GGG GG+ +MAQ+GG + +K A Sbjct: 811 -KKDEKINFIAMAGKNAVEKGAHCGNLLREVAKIAKGGG-GGKANMAQAGGKDVSKIKDA 868 Query: 889 IAGVASFL 896 + L Sbjct: 869 LNVAKDVL 876 >gi|205830242|sp|Q30PA9|SYA_SULDN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 849 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 334/896 (37%), Positives = 485/896 (54%), Gaps = 54/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FL FF+ H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+ P + Sbjct: 2 DIREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T + + Sbjct: 61 QTCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 L++TV++ D+EA LW + + D+I+R+ DNFW M +TGPCGPCSEIFFDQG E Sbjct: 121 LWVTVHESDDEAEALWLRHVSI--DRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + ++N Sbjct: 179 SGPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y LF +I+ E + +Y ++RVI DH+R+S FL+A G+ +NEGRGYVLRR Sbjct: 239 YSSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG++EP M L+ + MG Y L Q ++E + E+ RF KT+ Sbjct: 299 ILRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIA 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L + +I +G VAFKLYDT G PLD+ +D+L + L +D F + ++ Sbjct: 359 SGIELFNAELHNT--KDIFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQ 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQRSRA+A G G + L EK+ F+GY+ + Sbjct: 416 EQRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYESTKQ------------------ 457 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S V A++ + ++ +G V D TPFYA++GGQ GD G G L Sbjct: 458 -----KSRVLALLDESYHHADKLSAGVNGWVFLDTTPFYAQSGGQCGDIGELNGFAKVLD 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 L+ + +D ++ +HSATHLLH L +LG Sbjct: 513 TKKFFGLNLSQI-----STEKELKVGDEVEAVVDISRGE-ITKHHSATHLLHAVLFDVLG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 H+SQ GS + LRFD +H K I++ EL IE VN I + + T +M+ ++A S Sbjct: 567 DHISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A G KY D VRVVS G S CGG HV ++ I I ES + AG+RR Sbjct: 627 GAKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRR 681 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G A ++ Q E L+ + +K +++ V + +L+ + + Sbjct: 682 IEAVCGNAAFNYFSEQRELLREVEHEVK--NLDILAGVARLKSNIVELKKELHDAESCIK 739 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + KI +N +S ++ E+ S ++K +D L+ + +S +L + K+ K + V Sbjct: 740 TD----IKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQV-KDDKVMMAAGV 794 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A D + A +LGGGG GGR AQ+GG + +K +A ++ + Sbjct: 795 KG---SDAKAGDWIKHIAPLLGGGG-GGRADFAQAGGKDISKLSEAKIEALRYITE 846 >gi|282856374|ref|ZP_06265653.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455] gi|282585745|gb|EFB91034.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455] Length = 882 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 331/898 (36%), Positives = 496/898 (55%), Gaps = 48/898 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR F+ F++ G S SL+P +DP+L+FT +GMVPFK + G E+P Y Sbjct: 5 SGKEIRQLFVSFWESKGCHHYKSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPEYARAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVGRT RHHTFFEMLGNFS+GGYFK ++ W+ LT+ LD Sbjct: 64 TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGGYFKRESLTWGWEFLTQVLGLDG 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+Y T+Y +D EAF +W K G+ ++ ++NFW M GPCGP SEI +DQG+ Sbjct: 120 SRMYATIYKDDREAFDIWTKEIGMPESHLVLNGEDENFWFMGPQGPCGPDSEILYDQGKE 179 Query: 183 IPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + +R++EIWN VF Q+++Q LP+ +IDTGMGLER+A+++Q Sbjct: 180 FSCGPDCHPGCDCDRFLEIWNHVFTQYDRQADGSFKPLPRKNIDTGMGLERLASLIQGVR 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N+++ DLF L++ + + G++Y N+ + +VI DH+R+ F+IADGILPAN+G+GY Sbjct: 240 NDFETDLFAPLMKKAGDIAGVRYGENDQSDLALKVISDHVRAVCFMIADGILPANDGQGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA Y RL+G P + ++PA+ MG Y EL + +L IE+ + E+ FG Sbjct: 300 VLRRLIRRAARYGRLIGIDRPFINDVIPAVIELMGDPYAELGENRLTIEKIVEIEENGFG 359 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+ +G LLD + + L G VAF+LYDT G PL++ ++I G +D Sbjct: 360 KTIRQGSELLDAEVKAALESAGKTLGGAVAFQLYDTFGFPLELTREICAEHG-VSVDEEG 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + QR RAR+ S + + + ++ +L ++GAT F+GY+ Sbjct: 419 FKTEMARQRKRARSSSKQIANNVIKGNVFNALANEFGATDFVGYEKSE------------ 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++ ++A+V+ G V+ G++ V+ + +PFYAE GGQ+GDTG Sbjct: 467 -----------CNTKIRALVRDGRKVDALDEGEEGMVLLESSPFYAERGGQIGDTGLIKA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+ + D + + V +G LR ++ ID ++ NH+ATH+LH Sbjct: 516 DGVLAVVKDSTHPFGELNMQTVTVTKGALRVGQGVLAQIDMDRHLAIARNHTATHILHAV 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV QNGS ++ LRFD TH + +L+ IE N I + PV T + + Sbjct: 576 LGKVLGGHVRQNGSLVSDRFLRFDYTHYEAPRREQLEEIETLTNAAILTDRPVTTVVTDL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E A ASGA AL KY VRVVSV G SS LCGGTHV S+G I L IV E SI Sbjct: 636 EAAKASGAKALFEEKYGQTVRVVSV-----GDFSSELCGGTHVPSSGTIGSLKIVGEESI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---I 773 +GIRRI A+TG L L++ L V + ++ +V+ + EE + L+ Sbjct: 691 GSGIRRITAVTGMTTVRLLQELSRTADELSTRLAVKRPLLIEKVKGMEEEIKALKRQIDE 750 Query: 774 HAKRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++ +L +++ L K VN + D L+ D + + ++ Sbjct: 751 MSRAELAGSIDGLIAKKTLAGGAVNLYIGRVDGQDMDLLRESGDKFKDGDPKAVFVIFSK 810 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + E K +L ++ E+ + +A + + A ++ GG GGGRP+MAQ+GG K D+ Sbjct: 811 AAEDKVQILCMLGEEAQKKKLHAGRIVKELAALV-GGSGGGRPNMAQAGGREPGKIDE 867 >gi|284929441|ref|YP_003421963.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A] gi|284809885|gb|ADB95582.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A] Length = 880 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 320/905 (35%), Positives = 504/905 (55%), Gaps = 49/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F++ H++ PS+SLIP DPT++ T +GM+PFK IF GQEK + +T Sbjct: 9 TGNEIRDKFLHFYKGKKHQIFPSASLIPR-DPTVLLTIAGMLPFKPIFLGQEKSSFSRIT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND+DNVG T RHHTFFEMLGNFSFG YFKE++I+ AW+L T+ F L Sbjct: 68 TSQKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEQSIRWAWELSTQIFLLPP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + ++V++ D+EAF +W+ I G+ +IIR+ DNFW +TGPCGPCSE+++D Sbjct: 124 ESIVVSVFESDDEAFNIWENIIGIPQTRIIRMGEKDNFWKAGKTGPCGPCSELYYDFHPE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G + E+ R+IE +NLVFM++ + F L K +IDTGMGLERMA +LQ+ N Sbjct: 184 L-GEQNLNLEDDSRFIEFYNLVFMEYSRDENGNLFPLGKKNIDTGMGLERMAQILQKVPN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I++ + ++Y + ++I DH+R+ +IADGI +N RGY Sbjct: 243 NYETDLIFPIIESILNIIAIEYRHAEENTKKSLKIIGDHIRAVIHMIADGITASNTDRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RR + + RL+G + + +YPE+ + ++ I + L E++ F Sbjct: 303 VLRRIIRRIIRHGRLIGIEGKFINKIAQTAIQISEKSYPEVREKEIFISKELSKEEDIFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RG LL ++ + K ++G AF LYDT+G PL++ Q+I L ++I F Sbjct: 363 KTLERGEKLLCEIIDNTIKPNQISGLDAFILYDTYGFPLELTQEIAEESQLK-VNIDEFY 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + ++ Q+ R++A + +I L AT+F GY L S Sbjct: 422 EQMKLQQCRSKAAHENINLSLGYEI-NKLISDVDATKFTGYSDLNSSV------------ 468 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +VK I+ ++V++A G V+++ D TPFYAE+GGQ+ D G +G Sbjct: 469 -----------VVKKILVNQKVVQQAEKGNNVQIILDSTPFYAESGGQVSDHGYLVGHKS 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I D+ +K +F+H+ +E G L T +L +D R+ + +NH++THLL AL Sbjct: 518 FIRINDI-QKESEVFIHYGKIEEGYLLTNETLDAVVDNNYRQCIKLNHTSTHLLQAALRK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 L S ++Q GS +T D LRFD + IT +++ IE+ VN I++ V M+ + A Sbjct: 577 NLDSSITQAGSLVTFDRLRFDFQYPHQITIEQIEQIENTVNFWISEKHDVSIENMSLKVA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY++ VRV+ + S LCGGTHV++ EI L I+S++ I +G Sbjct: 637 KEKGAIAMFGEKYSEEVRVIDIPE-----ISMELCGGTHVNNIAEIGLFKIISQTGISSG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEAITG +L +D +K+L KV + R+ + + + Q + Sbjct: 692 VRRIEAITGSAILEYLKVKDSIVKNLCEHFKVKPEEIQKRIISLQTDLKDTQKQLEIVQQ 751 Query: 780 QLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +L + D++ D+ + + VD K L+ + LQ K+ G ++L Sbjct: 752 ELAMVKSDKLLDIAESLDNDLKIIVSNVGNVDKKALQHSAERLQNKLGEGAVVLGATLPG 811 Query: 834 KKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ ++ + +A A++ GG GGGRP++AQ+GG + +K ++A+ Sbjct: 812 NKVSLVASFSKKIYKDKNLSAGKFIGEIAQICEGG-GGGRPNLAQAGGKDASKLEEALLT 870 Query: 892 VASFL 896 + L Sbjct: 871 AKNKL 875 >gi|225021330|ref|ZP_03710522.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii ATCC 33806] gi|224945712|gb|EEG26921.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii ATCC 33806] Length = 905 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 316/919 (34%), Positives = 483/919 (52%), Gaps = 61/919 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61 IR F F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 19 THEIRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNGTA 77 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 78 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPIDEG 133 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D ++++TVY +D+EA +W+ + G+ ++I R+ DNFWSM GPCGP SEI+ Sbjct: 134 GYGFDPEKIWVTVYLDDDEAANIWENVVGIPTERIQRLGMADNFWSMGIPGPCGPSSEIY 193 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + + RY+EIWNLVFM+ E+ N + LPK +IDTGMG+ Sbjct: 194 YDRGPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGMGV 252 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I ++++TG Y + + RVI DH R++ +I D Sbjct: 253 ERIACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMIILD 312 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + I+ Sbjct: 313 GVTPGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRERIQ 372 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL+ G L + + + ++ + G AF L+DT+G P+D+ ++ Sbjct: 373 RVAITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGADAFALHDTYGFPIDLTLEMAA 432 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F++ + EQR+RA+A S G T+ + T+FIGYD L Sbjct: 433 EAGL-QVDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDEL--- 488 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V ++ G+ V E +G VEV+ D + FYAEAGG Sbjct: 489 --------------------TAQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEAGG 528 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G L++ DVQK + ++VH A VE G ++ +D R Sbjct: 529 QIGDRGTMTLGDSLLRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAARQA 588 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG Q GS P LRFD +++ +T +L+ IE N + + Sbjct: 589 HSATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVDAD 648 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T ++A A GA AL G Y + VRVV + GG S LCGGTHV+ + +I Sbjct: 649 WQVNTIETTLDEAKAMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQIG 704 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + I+ ESSI +G RRIEA +G + +L + + LAS LK V R+ ++ + Sbjct: 705 PVSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLTTK 764 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 ++ + + + H + S ++ + +L+++ ++ + Sbjct: 765 LKEAEKTIENLRKAELLAQGNRLVARAHLPNGIIVASAVLPDGTTAGDLRTLAADVKNHL 824 Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++G+++L + + K ++ T++ + R NA + + + G GGG+P MAQ Sbjct: 825 AGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMAQG 883 Query: 878 GGPNGNKADQAIAGVASFL 896 G N + + + + Sbjct: 884 SGSNPDGLPAGLKAASDHI 902 >gi|78778092|ref|YP_394407.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251] gi|78498632|gb|ABB45172.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251] Length = 851 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 334/896 (37%), Positives = 485/896 (54%), Gaps = 54/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FL FF+ H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+ P + Sbjct: 4 DIREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSC 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T + + Sbjct: 63 QTCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 L++TV++ D+EA LW + + D+I+R+ DNFW M +TGPCGPCSEIFFDQG E Sbjct: 123 LWVTVHESDDEAEALWLRHVSI--DRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKF 180 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + ++N Sbjct: 181 SGPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSN 240 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y LF +I+ E + +Y ++RVI DH+R+S FL+A G+ +NEGRGYVLRR Sbjct: 241 YSSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRR 300 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG++EP M L+ + MG Y L Q ++E + E+ RF KT+ Sbjct: 301 ILRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIA 360 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L + +I +G VAFKLYDT G PLD+ +D+L + L +D F + ++ Sbjct: 361 SGIELFNAELHNT--KDIFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQRSRA+A G G + L EK+ F+GY+ + Sbjct: 418 EQRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYESTKQ------------------ 459 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S V A++ + ++ +G V D TPFYA++GGQ GD G G L Sbjct: 460 -----KSRVLALLDESYHHADKLSAGVNGWVFLDTTPFYAQSGGQCGDIGELNGFAKVLD 514 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 L+ + +D ++ +HSATHLLH L +LG Sbjct: 515 TKKFFGLNLSQI-----STEKELKVGDEVEAVVDISRGE-ITKHHSATHLLHAVLFDVLG 568 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 H+SQ GS + LRFD +H K I++ EL IE VN I + + T +M+ ++A S Sbjct: 569 DHISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKS 628 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A G KY D VRVVS G S CGG HV ++ I I ES + AG+RR Sbjct: 629 GAKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRR 683 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G A ++ Q E L+ + +K +++ V + +L+ + + Sbjct: 684 IEAVCGNAAFNYFSEQRELLREVEHEVK--NLDILAGVARLKSNIVELKKELHDAESCIK 741 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + KI +N +S ++ E+ S ++K +D L+ + +S +L + K+ K + V Sbjct: 742 TD----IKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQV-KDDKVMMAAGV 796 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A D + A +LGGGG GGR AQ+GG + +K +A ++ + Sbjct: 797 KG---SDAKAGDWIKHIAPLLGGGG-GGRADFAQAGGKDISKLSEAKIEALRYITE 848 >gi|257869401|ref|ZP_05649054.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2] gi|257803565|gb|EEV32387.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2] Length = 880 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 336/918 (36%), Positives = 507/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKHLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGTVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W++ GL+ + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWREEIGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G E ERY+EIWNLVF +F Q LP +IDTGMGLE Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQADGTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV---TGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q N++ DLF +I+A +++ ++ +VI DH+R+ SF I D Sbjct: 234 RMVSIIQNAPTNFETDLFMPIIEAVQELSGNFAYGESKATDISFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE++ + IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDSAFLYKLVPIVGKIMESYYPEVLAQQAFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V++ E L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRNEEERFHETINEGLEILNQVIAKVKADGQETLAGADIFKLYDTYGFPVELTEEVAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR+RAR+ S + L + ++F+GY+ L Sbjct: 414 DEGLK-VDHAGFEKEMDAQRARARSARSTELSMGVQSAL--LTDIKVESRFVGYESLE-- 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +S + I+Q+ ++++ +G+ +++F +TPFYAE GG Sbjct: 469 ---------------------ANSELLVIIQEEQLLDTVTTGE-AKLIFKETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ DTG + + KKA H G L S L +D R ++ Sbjct: 507 QVADTGTVVDQSGVIVAEITDVKKAPNGQFLHTAKVTGNLTEGASYFLQVDQHRRNKIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +T+ EL +E VN I + Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTADELSQMEQIVNQKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPVVT + + A GA AL G KY VRVV+V S LCGGTHV++T +I Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGQDVRVVNVA-----DWSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 + IVSES I AG+RRIEA+T Q A + L + +LK++A +K +VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYALLHEGEAQLKAIAGIVKSAQIKDVVSKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + +L + ++ + F++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENQALASKLANQQAGDVFKDVKEVNGIRFIAAKVTVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + + K ++L +T ++ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TANDGKVNLLAAMTPQANEKGLKAGDLIKHIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G D A+ VA++L Sbjct: 860 GKQPEGIDAALTEVANWL 877 >gi|331697330|ref|YP_004333569.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190] gi|326952019|gb|AEA25716.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190] Length = 887 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 331/921 (35%), Positives = 489/921 (53%), Gaps = 63/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I F + F GH + S+SLI +DPTL+F N+GMV FK F G Y Sbjct: 1 MQTHEIARRFTDHFTGTGHTRVASASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR G D+D VGRT RH+TFF+M GNFSFG YFKE AI+ AW L+T Sbjct: 60 TSIQKCVRTG----DIDEVGRTTRHNTFFQMAGNFSFGDYFKEGAIEHAWRLITSSTSDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R+++TV+ +D+EA LW++I+G+ A++I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGLDPDRIWVTVFHDDDEAAGLWQRIAGIPAERIQRRGMADNYWSMGVAGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + +RY+EIWNLVFM+ E+ + P +IDTG+G+ Sbjct: 176 YDRGPQY-GREGGPVVDEDRYLEIWNLVFMEKERAAGGTKDDFPIIGELPAKNIDTGLGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G +Y + V RVI DH RS +I D Sbjct: 235 ERVAYLLQGVDNVYETDLVRPVITRAEELSGRRYGASHEDDVRFRVIADHARSGVMIIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N+GRGYVLRR++RR + +RLLG EP++ + EM +YPEL+ I Sbjct: 295 GVTPSNDGRGYVLRRLLRRIVRSSRLLGVQEPVLGAFAEVVRDEMAPSYPELVTDFERIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 +R+E+E F +TL G + D ++ + L GD AF+L+DT+G P+D+ ++ Sbjct: 355 AVVRAEEEAFLQTLTAGSRIFDVAVADTRRAGGTTLAGDQAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 GL +D F + EQR+RA+A + +G + ++ L + +G T F+GY L Sbjct: 415 EAGLT-VDQDRFAALMTEQRTRAKADAAARKTGHHDGSVYRPLLDAHGTTTFLGYTEL-- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 V +V G V A GQ+VEVV D+TPFYAEAG Sbjct: 472 ---------------------AAEGTVVGLVVDGAAVPAASEGQQVEVVLDRTPFYAEAG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G ++I DVQ G+ VH VE G + + ++V +D R +S Sbjct: 511 GQQADHGVLRTGSAIVRIDDVQSPVAGLRVHRGTVEAGTVAVDDAVVAEVDVARRASISR 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIA 644 H+ATHL+H + LG+ +Q GS P LRFD T + +A L IE+ VN + Sbjct: 571 AHTATHLVHAGVRGALGTAAAQAGSLNAPGRLRFDFTSPSGAVPAAALAEIEEEVNTKLQ 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N V T + ++A GA L G KY DRVRVV + G +S LCGGTHV+ TGE Sbjct: 631 ENREVETYETSMDEARRLGAMMLFGEKYGDRVRVVDM-----GDYSRELCGGTHVARTGE 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + ++ ++SE+SI +G+RR+EA+ G A + + L ++ LK + R+ + Sbjct: 686 LGIVKVLSEASIGSGVRRVEALVGNDALRQVSTEHLLLSQISDQLKARPDELPDRIAALV 745 Query: 765 EEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQK 818 E R + K + +A + ++ V +L+++ ++ Sbjct: 746 ERLRTAERDLEKHRADAALGAAGALADGAEDVAGIALVAVAAPAGVSGNDLRALAADVRG 805 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ G++ L G + K S ++ T DR A L A + GG GGG+P +A Sbjct: 806 RLGDRPGVVALFGTDGD-KVSFVVATTAAARDRGLAAGKLIPAFAPAV-GGRGGGKPDLA 863 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG N AIA + S L Sbjct: 864 QGGGQNPAGVPDAIAALRSAL 884 >gi|212693638|ref|ZP_03301766.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855] gi|237724236|ref|ZP_04554717.1| alanyl-tRNA synthetase [Bacteroides sp. D4] gi|265755936|ref|ZP_06090403.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA] gi|212663891|gb|EEB24465.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855] gi|229437424|gb|EEO47501.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4] gi|263234014|gb|EEZ19615.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA] Length = 872 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 330/919 (35%), Positives = 491/919 (53%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K+ Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKI 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ ++ FN +++Q+ RAR + W ++KE G T F+GYD Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V TPFYAE Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + ++I D +K+ ++ ++ ++ +D + R Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHVS+T Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVSAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SESS+ AG+RRIEAITG + + + L L + + ++ + + Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K K L + +I V + II + + +K + L+ Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + +++G K + ++++EDL+ NA L R +AK++ GG GGG+PH A Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869 >gi|222151505|ref|YP_002560661.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402] gi|222120630|dbj|BAH17965.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402] Length = 874 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 345/915 (37%), Positives = 511/915 (55%), Gaps = 59/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+ P Sbjct: 1 MKRLTAAEIRQMYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRVIPSN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSER 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++ +LY+T++ ED EA+ LW GL+ D+I RI NFW + E GP GP +EIF Sbjct: 117 WMAIEPEKLYVTIHPEDTEAYDLWVNEIGLTDDRITRI--EGNFWDIGE-GPSGPNTEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+GE P E ERY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 174 YDRGESYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNPDHTYSPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 MA++ Q+ NYD DLF +I+A+EQ++G KY N + V +VI DH+R+ SF I DG Sbjct: 234 MASISQDVPTNYDTDLFMPIIKATEQISGRKYRDNKEDDVAFKVIADHIRTVSFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ +A+ + +P M L+ + M YP++ + K I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAQKIDINKPFMYDLVDIVAAIMKPYYPDVDKNKDFIKKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE++RF +TL+ GLV + + D +L G+ FKLYDT G P+++ +++ G Sbjct: 354 VKSEEDRFHETLEEGLVQFNALKDSAKASDNVLKGEDVFKLYDTFGFPVELTEELAEEAG 413 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+E QR+RAR S + L ++ F+GYD L Sbjct: 414 -VEVDHEGFEVAMEAQRTRAREARQKTQSMQVQNEV--LSNIRVSSTFVGYDTL------ 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V + + A++Q G VEEA V+ + +TPFYA +GGQ+ Sbjct: 465 -----------------TVDTNIIALLQDGVEVEEADDRSDVQFIMAETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG G+G +++T+V K G +H V G + + ++ + R + NHSA Sbjct: 508 DTGTVTGEGFEIEVTEVTKAPNGQNLHTGTVRFGKVTKSA-VNAAVNAEFRTFVIKNHSA 566 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL +LG+HV+Q GS +TP+ LRFD +H P+T E+ +E VN+ I QN+ V Sbjct: 567 THLMHQALKDVLGTHVNQAGSLVTPERLRFDFSHFGPVTKEEIAKVEQIVNEKIWQNIHV 626 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 M +A A GA AL G KY D VRVV + +S LCGG HV +TGEI L Sbjct: 627 EINEMPISEAKAKGAMALFGEKYGDIVRVVEM-----SDYSIELCGGVHVRNTGEIGLFK 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYR 768 IVSES AG+RRIEA+T + A S+L + + +L +KV + + +V EI + Sbjct: 682 IVSESGTGAGVRRIEAVTSKAAFSYLSEYVDTVDTLLPVVKVKAKEQLTEKVNEITSMVK 741 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + + + +++ + + +I + +S + D+K L+ +MD + K+Q Sbjct: 742 EQEKQIVQLNKEISALKMGDISNNIQEINGIKVLSTEVEVQDAKMLRELMDDYKSKVQDA 801 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I LV + K + + V + L D+ A DL + A+ GG GGGRP AQ G PN Sbjct: 802 VIFLVAAT--DKLNYMASVPKALTDKVKAGDLIKAVAQE-TGGKGGGRPDSAQGGAPNPK 858 Query: 884 KADQAIAGVASFLKK 898 +A+ V S++ + Sbjct: 859 DVTKALQFVNSYINQ 873 >gi|78188347|ref|YP_378685.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3] gi|123580381|sp|Q3ATN3|SYA_CHLCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78170546|gb|ABB27642.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3] Length = 886 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 327/923 (35%), Positives = 499/923 (54%), Gaps = 68/923 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 1 MKSHEIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGSRPYVRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K AI AW+L T + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAITWAWELFTVVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +D+E+F++WK+ + ++ D I+R DNFW M ETGPCGPCSEI D Sbjct: 121 KERLYATVYQDDDESFQIWKEQTDINPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + R IE+WNLVF+Q+ +Q+ LPK +DTGMG ER+ V+Q K Sbjct: 181 D-GSGKELVNVGDYRVIELWNLVFIQYNRQSDGHLEPLPKKHVDTGMGFERIVAVMQGKG 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F+ L ++TG++Y + N + RVI DH R+ +F ++DG +P+NEGR Sbjct: 240 SNYDSDVFQPLFDKITEITGVRYGASLDAPNDIAMRVIADHARTLTFALSDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y+R LGY +P++ L+ L MG +PEL+Q + + +++E+E Sbjct: 300 GYVLRRILRRALRYSRNLGYHQPILHQLVGTLALAMGEVFPELVQRQEAVSAIIKAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ L ++ L +++ G AF+LYDT+G P D+ + + G +D Sbjct: 360 FIVTLDRGIDLFSELVEKLRASNGKVIAGSDAFRLYDTYGFPFDLTRLMAADEGFE-VDG 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++EQ++RAR+ + + A+QF+GYD L Sbjct: 419 EGFEHCMQEQKNRARSDRREKQRVDDDGAKWQWFSDVRASQFVGYDHLVH---------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S+ + I Q K+ +V D TPFYAE+GGQ GD G Sbjct: 469 -------------SATITGIRQGN---------GKLLLVLDATPFYAESGGQTGDNGWLE 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRT------------EMSLVLTIDYQNRRQL 583 RL + D K + I + + + E+++ ++ R+ Sbjct: 507 NSRYRLHVADTVKDGDAIVHVVSDAFDKVQDSAVQPEDVEIVEQELAVAASVHRTARQDA 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHL+H AL ILG HV Q GS ++P+ LRFD +H +T E++++E VN I Sbjct: 567 ERNHTATHLMHAALRRILGEHVQQKGSFVSPERLRFDFSHFSKLTDEEIEAVEIAVNTQI 626 Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + PVV + +DA+A GA A G KY DRVRVV + S LCGGTHV + Sbjct: 627 REAEPVVKHADVLFDDAVAKGALAFFGDKYADRVRVVEIPG-----MSVELCGGTHVDNI 681 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761 G I L I+SE+S+ +G+RRIEA+TG+ A L + +L+ + LK VV +V Sbjct: 682 GRIGLFKIISEASVASGVRRIEAVTGKAAEKLLWQEYRELQQIRQLLKAKGDEAVVEKVA 741 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDAL 816 + + ++L+ A+ + VE L+ +++ ++ + D + ++ AL Sbjct: 742 GLMDSKKELEKELAESRAAALVEQLTAALQAAPEVSGCRVLAIEVKNNDGETMRQATMAL 801 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874 + K + +L + K ++ T++ + +A L R +AK + GGG GG+ Sbjct: 802 RDKAPCAVGLLATVEA-GKVVLVSFATDEAVRTCSLDAGALIREAAKQVQGGG-GGKAEF 859 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 A +GG +A+ + ++ Sbjct: 860 ATAGGKQPENLSKALDAFTAAVR 882 >gi|260891458|ref|ZP_05902721.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254] gi|260858841|gb|EEX73341.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254] Length = 871 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 328/912 (35%), Positives = 509/912 (55%), Gaps = 58/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F++FF+ H+ S+SLIP +D +L+ T +GMVPFK F G+++ ++ + Sbjct: 1 MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK L+ Sbjct: 60 TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLE 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178 + RL+++VY D+EA+++W K G+ A++I+R+ DN+W+ G CGPCSEI++D Sbjct: 116 EDRLWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G+ ++G+R++EIWNLVF ++ + LP+ +IDTG GLER+ +V+Q Sbjct: 176 MGKNNEEAYRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERITSVVQ 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K NN+D DLF ++I+ + V ++ N ++I DH+R+S FLI DG+LP+NEGRG Sbjct: 236 NKDNNFDTDLFTNIIKGIKSVLEIQ-GNENEEAIKIIADHVRASVFLIGDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 Y+LR+I+RRA ++ + + L+P + M AYPEL + + IE+ +R Sbjct: 295 YILRKIIRRAFGAGSSAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRL 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF TL G +L+ + L + L ++ FKLYDT G P ++ + IL +G Sbjct: 355 EEERFATTLKNGTEMLEEEIQKLKAENQKELPAELTFKLYDTFGFPFELTKLILENQGFE 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + F + L EQ R++ + ++ EK+G T+F GY Sbjct: 415 ASEEE-FEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGYSQ--------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + I + I E++FD+TPFYAE+GGQ+ DT Sbjct: 465 -------------NFEEKSTLLHIAKSEGI-------SGYEMIFDKTPFYAESGGQVADT 504 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++ +V KK + I + + + ID R+ + NH+ATH Sbjct: 505 GIITSGEFEGRVVNVVKKHDVFIHQVEITRGIAPAVGVEVKMQIDVNRRKDIQRNHTATH 564 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH L LG+HV Q+GS + + LRFD +H + ++ ++ IE VNDII NL V Sbjct: 565 ILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAVSPEMIEKIEKGVNDIILSNLQVKI 624 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 N EDA A GA AL KY D VRVV ++ +S LCGGTHV STGEI L I Sbjct: 625 NYENIEDAKARGAMALFSDKYGDVVRVVEIDG-----YSIELCGGTHVKSTGEIGLFNIE 679 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I +G RRI A TG ++ +++ +EK+K ++ + + NVV +E+ + R Sbjct: 680 SESGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAV 739 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +H + + +L ++ + + DV + + ELK ++D ++K+QSGII+ Sbjct: 740 KVHEEMQTKLVKYEINEMLENLETVNDVKVLKSSFENKNVDELKEIVDRGKEKMQSGIII 799 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + KA ++ VT+DL+ + A ++ + A + GG GGGRP AQ+GG +G+ Sbjct: 800 L-GTNNNGKAIFVVGVTKDLISKVKAGEIVK-VAAQVAGGNGGGRPDFAQAGGKDGSAVK 857 Query: 887 QAIAGVASFLKK 898 +A+ F+ + Sbjct: 858 EAVEKAFEFITE 869 >gi|312195530|ref|YP_004015591.1| alanyl-tRNA synthetase [Frankia sp. EuI1c] gi|311226866|gb|ADP79721.1| alanyl-tRNA synthetase [Frankia sp. EuI1c] Length = 883 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 331/915 (36%), Positives = 492/915 (53%), Gaps = 58/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL F++ GH ++PS+SLI DPTL+ N+GMVPFK F G P Sbjct: 1 METAEIRRRFLNHFEQRGHLVVPSASLIAE-DPTLLLVNAGMVPFKPYFLGDLTPPAPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQKCVR D+DNVG+T RH +FF+M GNFSFG YFK I A++LLT+ + Sbjct: 60 TSVQKCVRTV----DIDNVGQTARHASFFQMCGNFSFGDYFKAEVIPWAFELLTEGYGFK 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+ TVY +D+EA ++WK + L A++I R DN+WSM GPCGPCSEI+FD+G Sbjct: 116 PDDLWATVYLDDDEAEEIWKGL--LPAERIQRRGKEDNYWSMGVPGPCGPCSEIYFDRGP 173 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLERMATV 236 G G + RY+E+WNLVFMQFE+ LP SIDTGMGLERMAT+ Sbjct: 174 AY-GRDGGPEADENRYLEVWNLVFMQFERGEGAGYEFPILGDLPAKSIDTGMGLERMATL 232 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ + ++TG Y + + V RVI DH R+++ LIADG++P+N Sbjct: 233 LQGVENLYEIDISRPVLDRAGELTGKTYGAQHGDDVRLRVIADHTRTAAMLIADGVVPSN 292 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ RLLG EP+M +L + + MG YPEL+ I E Sbjct: 293 EGRGYVLRRMLRRAVRNVRLLGGREPVMENLFGVVQSAMGPIYPELVDRAAAITAVAVGE 352 Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL G + D + + L G+ AF+L+DT+G P+D+ ++ +GL Sbjct: 353 ELAFLETLRTGTTIFDVAVGKAKSTGAAQLAGEEAFQLHDTYGFPIDLTLEMAAEQGLT- 411 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR A+A G + ++ + + G T F GY L Sbjct: 412 VDEPGFRRLMDRQRELAKADRASRRIGNVDLSVFRPILARSGPTSFTGYTEL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ V +V G V A G+ V VV D TPFYAE+GGQ Sbjct: 464 ---------------TRTATVVGLVSAATGLGVPAAGEGEDVGVVIDSTPFYAESGGQEA 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + DG ++I DVQK + +H V RG +R + +T+D RR +S +H+A Sbjct: 509 DLGRFVFDGGEVEIIDVQKPIPDLVLHRGKVVRGEIRLGAEVEVTVDADRRRAVSRSHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H A LG +Q GS +P LRFD I +A L +ED VN++ ++L V Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGSIPAAVLADVEDEVNEVALRDLDV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + ++++A GA AL G KY +RVRVV D G +S LCGGTHV+ + ++ + Sbjct: 629 TAFVTSQDEARRIGAMALFGEKYGERVRVV-----DVGDYSRELCGGTHVARSAQLGAVK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++SESSI AG RR+E + G A +L + + L+ LKV + RV +I R Sbjct: 684 LLSESSISAGTRRVEGLVGLDAFRYLAREHLLVSQLSGLLKVRADELPDRVSDIVTRLRD 743 Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI-QS 822 + + + + + S + V ++ +L+ ++ ++ ++ Sbjct: 744 AERELERVRGEAVLAGAAGLANSAVDVGGVALVAAEAPNGTSPDDLRKLVLDVRGRLIDR 803 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I+ + ++A +++ TE R A DL + ++ L GG GGG+P +AQ GG + Sbjct: 804 PAIVAAASAGGERAFLVVATTEGSRGRGLKAGDLVKAASAEL-GGSGGGKPDVAQGGGSD 862 Query: 882 GNKADQAIAGVASFL 896 +A+A V + Sbjct: 863 ITGVGRALAKVRDLV 877 >gi|282901157|ref|ZP_06309088.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii CS-505] gi|281193989|gb|EFA68955.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii CS-505] Length = 878 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 331/905 (36%), Positives = 504/905 (55%), Gaps = 49/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ + H+ LPS+SL+P DPT++ T +GM+PFK IF GQ ++ T Sbjct: 7 SGNHIRQLFLDFYTQRQHQPLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRAAEFKRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F+L Sbjct: 66 TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFELPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL ++V++ED+EAF +WK+ G+ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 122 ERLVVSVFEEDDEAFNIWKQQVGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ N Sbjct: 182 L-GDDHIDLEDDSRFIEFYNLVFMQYNRDVSGNLTPLQNKNIDTGMGLERMAQILQKVPN 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ + Y ++ + +VI DH+R+ +IAD I +N GRGY Sbjct: 241 NYETDLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADDIRASNVGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G + + + S YP L Q + +I+ L E+ F Sbjct: 301 ILRRLIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQREAVIKAELEREESNFL 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTLDRG LL ++ + I++GD AF LYDT+G PL++ Q+I + L+ +D+ Sbjct: 361 KTLDRGEKLLGEIIQEVKHQGLTIISGDSAFTLYDTYGFPLELTQEIAQEQNLS-VDVEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN + +Q RA+A + T + L E +T+FIGY L Sbjct: 420 FNTEMHKQVERAKAAHETIDL-TVQGSLDKLAEHIHSTEFIGYRQL-------------- 464 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ + ++ +G A G V++V D+TPFYAE+GGQ+GD G G Sbjct: 465 ---------STTAKIAVLLVEGIAQSTAPVGTNVQIVLDKTPFYAESGGQIGDQGYIFG- 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L + KK F+H +ERG ++ S+ +D NRR+ NH+ATHLL AL Sbjct: 515 DGLLIKIEDVKKESDFFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+ +SQ GS ++ D LRFD K +T E++ +ED VN I+Q P I+ Sbjct: 575 KKIVDEGISQAGSLVSFDRLRFDFNCPKSLTEDEVQQVEDLVNAWISQAHPAQVEILPLP 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY D+VRV+ S LCGGTHV++TGEI + I+S+ + Sbjct: 635 EAKARGAVAMFGEKYGDQVRVIDFPG-----VSMELCGGTHVNNTGEIGVFKIISQVGVS 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA++G +L +D+ +K L+ KV + R+ + E R + + Sbjct: 690 AGIRRIEAVSGAAVLDYLNVRDKVVKDLSDRFKVKPEEIPDRITILQTELRHNEKVIQNL 749 Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + + + ++++D + LK + L +KI +G ++L I + Sbjct: 750 KSQLAIVKSDTLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIINGAVVLASIPE 809 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S++ + + ++ A AK+ GGGG GG+P++AQ+GG + +K QA+ Sbjct: 810 PGKVSIVAAFSSHVNEKGLQAGKFVGNIAKLCGGGG-GGKPNLAQAGGRDASKLPQALES 868 Query: 892 VASFL 896 L Sbjct: 869 AKDNL 873 >gi|238926823|ref|ZP_04658583.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531] gi|238885355|gb|EEQ48993.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531] Length = 890 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 331/912 (36%), Positives = 512/912 (56%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 +R +L FF +K GH LPS SL+P NDPTL+ +GM P K FTG+ KP Sbjct: 19 MTGKELREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHR 78 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + T Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L Sbjct: 79 IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 134 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++T+Y D+EA ++W + GLS D I+ + DNFW + GPCGP SEI+ D G Sbjct: 135 PKEKLWVTIYPNDDEARQIWLEQPGLSLDHIVPL--EDNFWEIGP-GPCGPDSEIYIDLG 191 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G P + +R++EIWNLVF Q+++ E +L +IDTG GLER+A+V+Q Sbjct: 192 AERGCGSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQ 251 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I+ + V+ +Y + ++ +VI DH RS +I DGILP+NEG Sbjct: 252 NKKTNFETDLLYPVIEYAVNVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEG 311 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS--AYPELIQAKLLIEETLRSE 354 RGYVLRR +RRA+ + R+LG T+P + + A+ G + EL+ + I+ +R E Sbjct: 312 RGYVLRRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIKRVIRIE 371 Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF TL +G+ LL+ + +IL G+V FKLYDT+G P ++ ++IL GL Sbjct: 372 EERFAATLVQGIDLLNEEIDSLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK- 430 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F Q +E+QR+RAR+ D Sbjct: 431 LDDAGFAQEMEKQRNRARSARA-----------------------------ENQAVAVPD 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 L + + V AI + G +V+ G+ ++ TPF+AE GGQ+GD G Sbjct: 462 LSGLDTSALTENAEARKAEVVAIWRDGALVDMLHDGESAGIILSTTPFHAEGGGQVGDAG 521 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D R+ I + ++ +G H A VE G ++ ++ + +D ++ + NH+ATHL Sbjct: 522 LLLSDVGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHL 581 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL I+G HV Q GS +TP+ LRFD T+ +P+T +++ IED VN+ + ++ + Sbjct: 582 LQAALQRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEVLSSIDLDIS 641 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M A GA AL G KY D VRVV V S LCGG+HVS+TG+I L I+ Sbjct: 642 TMPIAVAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEAITG+ A ++ D +++L+ LKV G+++ +V+++ +E + +Q Sbjct: 697 ESGVAAGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLLTQVDKLIDEKKNMQE 756 Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A + Q + + L +I + + ++ +EL+++ D +K+ +GI++L Sbjct: 757 QLRVFADSRDQADAQKLLSDVQEIGKFHVIVGKVNVDSMEELRNIADLTCEKLSAGIVVL 816 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G++ K ++++ +D + +A ++ + +AK +GGGG GGRP MAQ+GG Sbjct: 817 -GMAANDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGG-GGRPDMAQAGGKMPQNLP 874 Query: 887 QAIAGVASFLKK 898 QA +++ Sbjct: 875 QAFDDAVLVIRQ 886 >gi|312132175|ref|YP_003999515.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132] gi|311908721|gb|ADQ19162.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132] Length = 887 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 324/928 (34%), Positives = 498/928 (53%), Gaps = 77/928 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+K GH ++PS+ L+ NDPTLMF NSGM FK+ F G P + + Sbjct: 1 MTSHEIRKAFLDFFEKRGHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGNPPSKRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ A+ +W+LLT+ + L Sbjct: 61 ADTQKCLRVSGKHNDLEEVGFDTYHHTMFEMLGNWSFGDYFKKEALAWSWELLTEVYKLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + R+Y++V++ D+EAF +WK I G ++II DNFW M + GPCGPCS Sbjct: 121 KDRIYVSVFEGNPSEGVPFDQEAFDIWKSIIG-DENRIILGNKKDNFWEMGDIGPCGPCS 179 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G +++ + +EIWN VFMQ+E++ LP+ +DTGMG Sbjct: 180 EIHIDLRDQEEVDQISGKELVNKDHPQVVEIWNNVFMQYERKADGTLIPLPEKHVDTGMG 239 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNHRVIVDHLRS 281 ER+ +Q K +NYD DLF++ IQ EQ++G KY + V RVI DHLR+ Sbjct: 240 FERLCMAIQGKKSNYDTDLFQNTIQVIEQLSGFKYGVNGTLSSDNYVDVAMRVIADHLRA 299 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340 SF I+DG LP+N GYV+RRI+RRA+ Y L + EP M L+P L + +PEL Sbjct: 300 VSFAISDGQLPSNAKAGYVIRRILRRALRYGYSYLNFREPFMCKLVPVLAKQFADVFPEL 359 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + + E++ F +TL++GL LD + +++L+G+ F+L DT G P+D+ Sbjct: 360 QAQVDFVSKVVEEEEKTFLRTLEQGLKRLDVLFKEDKGEKLLSGETVFELSDTFGFPVDL 419 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +G GID + +ALEEQ++R+R + + W L + A +F+GY Sbjct: 420 TALIAREKGF-GIDEEGYKKALEEQKARSRKDAQKEAA-----DWVELGD-TDAVEFLGY 472 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L + + + R + + GQ++ VV DQTPF Sbjct: 473 DQLSSTALLTKYR----------------------------ISKTKQGQEIHVVLDQTPF 504 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM----SLVLTID 576 YAE GGQ+GDTG L ++D +K+ + + + + ++ Sbjct: 505 YAEMGGQVGDTGTITIGDQTLHVSDTRKENDLFIHVVKDKNAAEILSGYEEPVEVFAQVN 564 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R+ + NH+ATHL+ AL +LGSH+ Q GS + RFD +H +T ELK +E Sbjct: 565 AERRKNIEKNHTATHLMLAALKEVLGSHIVQRGSYQNDELTRFDFSHFAKVTDEELKKVE 624 Query: 637 DNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 D VN+ I N+ R + ++A+ GA A G KY D VRV++ + +S LCG Sbjct: 625 DIVNEKIRANILKGEKRNVPFQEAVDMGATATFGEKYGDFVRVITFDPN----YSIELCG 680 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV+STGEI L +SE S+ AG+RR+EA+TG +A + Q + ++ L LK + + Sbjct: 681 GTHVNSTGEIGLFRFISEGSVSAGVRRVEAVTGVKALELMREQAQLIQELKDLLKAT--D 738 Query: 756 VVGRVEEIWEEYRKLQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 ++ VE + E + Q +A + + +N ++ ++ + LK Sbjct: 739 LLKAVETLKAENAQFQKRIEMFENASIQAAKVALLSKVENVNGMNVVAARVNVPHADGLK 798 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGG 868 ++ L++ I +++L + + K S+ I++ E+++ NA + R AK++ GG G Sbjct: 799 TLAFGLKQGIGKPVVILGAVIND-KPSLAILIDENVVKEKNLNAGTIIREVAKLMKGG-G 856 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+PH A +GG + D AI + + Sbjct: 857 GGQPHFATAGGSDVKGLDDAIEAAKASI 884 >gi|300088455|ref|YP_003758977.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528188|gb|ADJ26656.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 856 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 330/907 (36%), Positives = 495/907 (54%), Gaps = 64/907 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +RT FL++F + GH+++PS+SLIP DPTL+ T +GMV FK F G+EKP + Sbjct: 3 MTGDQLRTLFLDYFAEKGHKVMPSASLIPHGDPTLLLTTAGMVQFKPYFLGREKPPATRL 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKC R D+D VG H TFFEMLGNFS G YFK+ AI LAW+ +T+ L Sbjct: 63 TSTQKCFRT----TDIDAVG-DASHLTFFEMLGNFSVGDYFKKEAIDLAWEFVTERLGLP 117 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 RL++TV+ +D+EA + W+ GL A++I+R+ DNFW ++GPCGPCSEI +D G Sbjct: 118 MERLWVTVFLDDDEAIRFWRDK-GLPAERIVRLGEKDNFWGPAGDSGPCGPCSEIHYDFG 176 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + R+ EIWNLVFMQF Q R LP+ +IDTGMGLER++ ++Q Sbjct: 177 EAAGCGKPDCGPACSCGRFCEIWNLVFMQFNQDTAGTRTPLPRPNIDTGMGLERLSAIMQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 + Y D F +L+ +V+G +Y + R++ +H R +FLIADG++P+NE Sbjct: 237 GVPSVYQTDRFDYLLDRVAEVSGREYGRDAETDRAMRIVAEHSRGITFLIADGVIPSNES 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RR + R+LG +P M+ L+ A+ M AYPEL + I E + E+ Sbjct: 297 RGYVLRRLLRRTALFGRMLGLDQPFMVPLVEAVIERMSPAYPELTGRREFIIELVAREES 356 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +TL G+ LL+ +++ G+ ++ G+ AF+LYDT+G PLD+ +I +G G+D Sbjct: 357 RFAETLLTGMQLLEDMMAGAGEGRMITGEQAFRLYDTYGFPLDLTMEIASGKGF-GVDEA 415 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ + QR +ARA + L + T F GYD L Sbjct: 416 GFDREMGRQREKARAGARFGTDKAV-----PLDHTFQHTCFTGYDTLSQY---------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + I++ + G+ +V D+T FYAE GGQ GD G Sbjct: 461 -------------GTIDGIIRNNAQTDVISEGEHGGLVLDKTAFYAEMGGQAGDIGRITA 507 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++T + G+ +H V RG R + +D R + NH+ATHLL A Sbjct: 508 GDSVFEVTGTVLLSPGVTIHQGYVARGAFRIGDEALTAVDPTTRYDTARNHTATHLLQAA 567 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG H+ Q GS + PD LRFD +H K +T EL +E VN+ I +N PV Sbjct: 568 LIEVLGEHIQQRGSVVAPDRLRFDFSHLKAVTPEELIRVEAIVNERIRENHPVTAAETGY 627 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 DA+ SG AL G KY + VRV+S+ S+ LCGGTH+ +TGEI I+SESS+ Sbjct: 628 RDALKSGVTALFGEKYGETVRVLSIGS--DRRVSAELCGGTHIRATGEIGYFKIISESSV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ A + L Q + ++E + E + A+ Sbjct: 686 GAGLRRIEAVTGRGAEAWLSEQFTNSRE--------------KLERLQTELDDERRSAAE 731 Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + I ++ + + D + L+ + D L+ ++ S +I+L + Sbjct: 732 LKRELARQRALSLTAGARDIDGGKLLAVEVPDTDMETLRDMADELRGRLGSAVIVLASVQ 791 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K L VT+DL+ R ++A ++ + +++ GGGG GG+PH+AQ GG + ++ +A+A Sbjct: 792 GD-KPVFLAAVTDDLVARGYHAGNIIKRLSQIAGGGG-GGKPHLAQGGGRDKSRLAEALA 849 Query: 891 GVASFLK 897 V F++ Sbjct: 850 AVNEFIR 856 >gi|32266358|ref|NP_860390.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449] gi|41018183|sp|Q7VHV4|SYA_HELHP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|32262408|gb|AAP77456.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449] Length = 892 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 343/929 (36%), Positives = 506/929 (54%), Gaps = 80/929 (8%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR +L+FF H++ S L+P +D +L+FTN+GMV FK+IFTG+ P T+ Sbjct: 5 DIRKQYLDFFASKSHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPAPPRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ + Sbjct: 64 QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTQVLGFSKDV 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 LY+T+++ D+EA++LW + + +I R+ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 124 LYVTIHESDDEAYELWCE--HIEPSRIKRMGDKDNFWQMGDSGPCGPCSEIYVDQGEKYF 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 EG+R++EIWNLVFMQFEQ+ R +LPK SIDTGMGLER+ + + K NN Sbjct: 182 QSDEDYFGGEGDRFLEIWNLVFMQFEQK-GGVRTLLPKPSIDTGMGLERVIALKEGKINN 240 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIV-------------------NHRVIVDHLRSSSF 284 +D LF L+Q +++T Y G++ + + RVI DH RS +F Sbjct: 241 FDTSLFAPLMQCLQKLTNKTYFGDDEIFDRLDLQEAEMIKIKNIQASFRVIADHARSVAF 300 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 L+A G+ EGRGYVLRRI+RRA+ + LLG +P + ++ +C MG Y L + K Sbjct: 301 LLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLKKPFLWQVVEVVCESMGVHYSYLQERK 360 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-------KDEILNGDVAFKLYDTHGLP 397 I+E ++E+ERF +T++ G+ L L L ++ + +G+VAFKLYDT+G P Sbjct: 361 RAIKEQCKNEEERFFETIESGMTLFSTELEKLQSAVQTQKQEILFSGEVAFKLYDTYGFP 420 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 LD+ QD+L R +D+ +F Q + EQ+SR++A G G E + +L K+G +F Sbjct: 421 LDLTQDMLRER-HIQVDMQAFEQCMNEQKSRSKASWKGSGDALKEGDFNALLSKFGENKF 479 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFD 516 +GY+ +N + +KA++ Q ++V+ + V+ D Sbjct: 480 VGYE-----------------------SNKETCKIKALLDSQFKMVDTLSPSSQGWVMLD 516 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-------TEM 569 +TPFY E+GG +GD G LQ QK A+ + Sbjct: 517 KTPFYPESGGPVGDKGALYSTNRILQSAQAQKFAQVLDTQKFFGLNLSQIEALSALKVGQ 576 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + +D +++ +HSATHLLH AL TILGSH++Q GS + P LRFD +H K +T+ Sbjct: 577 EVFAEVDSIR-FEIAKHHSATHLLHLALRTILGSHIAQAGSLVQPHRLRFDFSHPKALTN 635 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 E+ IE+ VN+ I Q+ + M+ + A A GA AL G KY +RVRVVS Sbjct: 636 EEITHIENLVNEQILQSNAQLCENMDMQQAKAKGAMALFGEKYGERVRVVSFGD------ 689 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S LCGG HV++T EI YIV ES + +G+RRIEA+ G A + +L L Sbjct: 690 SIELCGGIHVNNTAEIGSFYIVKESGVSSGVRRIEAVCGNAAYHYGKNALLELSRARESL 749 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 K +V+ +E+I + + + K + +V+ L +I V + + V + E Sbjct: 750 KAQ--DVLQGIEKIKMQLNEAK--EKANKAKQSVKSLDYEEINGVRLIVLKLDSVSANEA 805 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 K ++D + + +S I+L+ S K S++ V A + A+ L GG GG Sbjct: 806 KEIIDRSKNENESVAILLLSESNN-KISIVAGVKNAP---LKAGAWVKQVAQEL-GGNGG 860 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GR A +GG + +K QA+ K Sbjct: 861 GRDDFATAGGKDIDKISQALNLAKDIATK 889 >gi|54025614|ref|YP_119856.1| alanyl-tRNA synthetase [Nocardia farcinica IFM 10152] gi|59798495|sp|Q5YTJ9|SYA_NOCFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|54017122|dbj|BAD58492.1| putative alanyl-tRNA synthetase [Nocardia farcinica IFM 10152] Length = 888 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 321/921 (34%), Positives = 480/921 (52%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F + GH +PS+SLI DP L+F N+GMV FK F GQE P Y Sbjct: 1 MQTHEIRRRFLDHFVRAGHTEVPSASLILA-DPNLLFVNAGMVQFKPYFLGQEAPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D++ VG T RH+TFF+M GNFSFG YFKE AI LAW+L++K Sbjct: 60 TSVQKCVRTG----DIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAITLAWELISKPQSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D R+++T Y +D EA ++W +++G+ ++I DN+W M GP GPCSEI+ Sbjct: 116 GFGFDPERIWVTAYQDDPEAAEIWHRMAGIPKERIQFRDGKDNYWDMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 FD+G G G + +RY+EIWNLVFMQ + Q LPK +IDTGMG+ Sbjct: 176 FDRGPAY-GKDGGPVADEDRYLEIWNLVFMQDVRGELSPKQGHPPIGSLPKKNIDTGMGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E++TG +Y E + V RVI DH R+++ LI+D Sbjct: 235 ERVAMLLQGVDNVYETDLLRPIIGKAEELTGRRYGAEHASDVRFRVIADHARTAAMLISD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N+GRGYVLRR++RR + ARLLG +P+M + + M +YPEL I Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSARLLGAEKPVMAEFMQVVSDLMSPSYPELATDFDRIR 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ F KTL G L D + + G AF L+DT+G P+D+ ++ Sbjct: 355 TVAVGEETAFLKTLTTGSTLFDNTAAAVKAKGGTKIAGADAFTLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL+ +D F + EQR RA+ + + + GAT+F G+D L Sbjct: 415 EAGLS-VDEEGFRSLMAEQRRRAKEDAAARKHAHADLSIYKELVDRGATEFTGFDELTS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A++ G V A GQ VEV+ D++P YAE+GG Sbjct: 473 ----------------------EAHVLALIADGVRVPTATQGQDVEVILDRSPLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G++L++ DVQK A+ ++VH VE+G + ++ D RR + Sbjct: 511 QIADRGSITASGLKLRVNDVQKIAKKLWVHKTTVEQGQITEGDVVLAQADPAWRRGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG + Q GS P LRFD ++ + IE ND + + Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSEQQKADIEAVSNDAVGAD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 PV T + + A GA AL G Y D VRVV + GG S LCGGTHV + +I Sbjct: 631 FPVNTFVTDLPKAKQMGALALFGENYGDEVRVVEI----GGPFSMELCGGTHVQHSSQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G+RR+EA G + +L + L +AS LKV V RVE++ E Sbjct: 687 PITLLGESSVGSGVRRVEAFVGLDSYKYLAKERALLAGVASSLKVPSEEVPARVEQLVER 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNF-MSHIISEVDSKELKSVMDALQKKI 820 + + + K+ + ++ V + V + +L+++ ++ + Sbjct: 747 LKVAEKELERTKIAAVLSSAGKFVEEAERVGRVLLVAAAAPEGVAAGDLRTLATDIRGRF 806 Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 S +++L+G + + K ++ V + + A +L + G GGG+P MAQ Sbjct: 807 GSEPAVVVLLG-NADGKVPFVVAVNKSAQEIGVKAGELVGSFGPSIA-GRGGGKPEMAQG 864 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + + +A V + + + Sbjct: 865 AGSDPSGIPAGLAAVRARVAE 885 >gi|226949919|ref|YP_002805010.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] gi|226843074|gb|ACO85740.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] Length = 879 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 332/908 (36%), Positives = 514/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D + ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIRAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + +IL+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E E G + +V TPFYAE GGQ GDTG Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGIIVTYNTPFYAEMGGQTGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++MN Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + IVSE+ Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|328950125|ref|YP_004367460.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884] gi|328450449|gb|AEB11350.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884] Length = 896 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 338/940 (35%), Positives = 492/940 (52%), Gaps = 91/940 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--P--- 56 + IR +L+FF+ GH LPS SLIP +DPTL+FT +GM P K F G P Sbjct: 1 MRTAEIREKYLKFFESKGHLALPSFSLIPEDDPTLLFTVAGMAPLKPYFLGARPVFPGHE 60 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 ++ V T QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK AI AW+ LT Sbjct: 61 GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKREAILWAWEFLT 116 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168 + LD RLY+TV+++D+EA+++W+ G+ ++I R ++NFW S GP Sbjct: 117 SPEWLGLDPDRLYVTVFEDDDEAYRIWRDEVGVPEERIGRFGEDENFWPANAISQGPNGP 176 Query: 169 CGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNK----QERFILPKM 222 CGPCSEIF+D+G G+R++E+WNLVF Q+ + + LP+ Sbjct: 177 CGPCSEIFYDRGPGFGSADETGPNTGSGDRFVEVWNLVFTQYNRTGPVPGPGQLEPLPQR 236 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282 +IDTGMGL R+A +LQ+ + YD D F+ +I +++G YEG V+HRVI DH+R+ Sbjct: 237 NIDTGMGLYRVAAILQDVQDFYDTDTFRPIIDRVVELSGRPYEGAASVSHRVIADHVRAV 296 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 ++DG + +N GRGYV+RR++RRA+ + LLG EP M L P + +G YPE+ Sbjct: 297 VAALSDGAVFSNTGRGYVIRRLLRRAVRHGYLLGLREPFMYRLAPVVAEVLGDYYPEMRD 356 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 E+ +R E+ERF TL+ G+ L+ +L + + +L+G+ AF+LYDT+G P D+ Sbjct: 357 NLPATEKAIRLEEERFLTTLESGIRRLEDLLQGIPQGGVLSGEEAFRLYDTYGFPWDLTV 416 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGY 460 +I RG +D F +A+ Q+ RAR S G + + +L GAT+F GY Sbjct: 417 EIAAERG-VRVDREGFERAMARQQERARKASAFTGEVFVKSAEALDTLVAARGATEFTGY 475 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 L V I++ +E A +G++V+VV D+TPF Sbjct: 476 TTLED-----------------------EGEVLLILEGEAELERAEAGREVQVVLDRTPF 512 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE GGQ+GD G G R ++ +K +GI +H VE G+L + +D R Sbjct: 513 YAEGGGQIGDFGYLEWAGGRARVVTTRKSPQGIHLHQVRVEEGVLEPGRRVRAVVDPARR 572 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P++ EL+ IE VN Sbjct: 573 -ATERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLSLEELERIERLVN 631 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSAL 693 + + PV E+A GA AL G KY D VRVVSVE D V S L Sbjct: 632 RWVQADFPVTWTYKPLEEAKREGAMALFGEKYADVVRVVSVEGSPDVRGILDAPVTSKEL 691 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGG HV TGEI I SE ++ AG+RRIEA+TG+ A + G + ++LA L + Sbjct: 692 CGGCHVRRTGEIGYFVIRSEEALAAGVRRIEALTGEAAVAFARGLLNRTQALARELGTTV 751 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSK 807 V RV+++ EE + + K +L L + +++ +S +D Sbjct: 752 EAVPERVQKLQEELKARGREIERLKAELARAQLGTGGKAEAREAGGWRYLAAELSGLDMN 811 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR--------- 857 L+ D L + + LV + + +++ V+ +R A + + Sbjct: 812 ALRRAADELLEARG---VDLVAVGADG--MLVVKVSPAAQERGLAAGRVMKALAEAAGGR 866 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + AQ GG + +A A + L+ Sbjct: 867 GGGREAL----------AQGGGFD---LKRAFAALEEVLR 893 >gi|205830052|sp|A1R709|SYA_ARTAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 325/926 (35%), Positives = 491/926 (53%), Gaps = 64/926 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+P Y Sbjct: 1 MKSQEITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT Sbjct: 60 TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L RL++TVY+ED+EA +LW K +G+ A++I R+ DN+WS + GP GPCSEI+ Sbjct: 116 GYGLPAERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + RYIEIWNLVFMQ++ + + LP+ +IDTG+G+ Sbjct: 176 YDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGM 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS Sbjct: 235 ERLAMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LIADG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 295 ALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVE 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDI 400 I +E++ F +T+ G L+ ++ + L+G AF L+DT+G P+D+ Sbjct: 355 TDFARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D F + EQR RA+A + G G + + G T F GY Sbjct: 415 TLEMAEEAGL-QVDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGY 473 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L G + V+ IV G V A +G ++E+V ++TPF Sbjct: 474 DELEG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPF 510 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAEAGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + ++ + +D + R Sbjct: 511 YAEAGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N Sbjct: 571 HAAEQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N V T++M +A A GA AL G Y VRVV + G S LCGGTHVS Sbjct: 631 IAIRNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEI----DGAWSRELCGGTHVS 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 687 NTSLIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVMD 814 + + + + + + + A V ++H +V + +L+++ Sbjct: 747 SSTLNKLKATEKELDRLRKEQLAAAAANLVGTAKDAAGVRVVAHDAGQVGGADDLRNLAL 806 Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 L+ ++ S + + G+S ++ ++ A L RL+A +LGGGG GG+ Sbjct: 807 DLRNRLGSEASTVAVAGVSNDRPVILIATNEAAREAGVKAGALVRLAAGILGGGG-GGKD 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG + K +A+ V + K Sbjct: 866 DVAQGGGTDAGKVSEALTAVVDAIAK 891 >gi|254457078|ref|ZP_05070506.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1] gi|207085870|gb|EDZ63154.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1] Length = 849 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 338/896 (37%), Positives = 493/896 (55%), Gaps = 54/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64 IR +L+FF+ H+ + S+ L+P +D +L+F N+GMVPFK+IFTG+ T+ Sbjct: 2 DIREEYLKFFESKNHDRIASAPLVP-DDASLLFNNAGMVPFKSIFTGEIPRPANPRATSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L + Sbjct: 61 QTCLRAGGKHNDLENVGHTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITEVIKLPVDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 L++TV++ D+EA LW+K +S D+I+R+ +DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 LWVTVHESDDEAELLWQK--HVSKDRILRLGDDDNFWQMGDTGPCGPCSEIFYDQGAENF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + +N Sbjct: 179 SGEEDYLGGDGDRFLEIWNLVFMQYEKSADGTMTELPKPSIDTGMGLERVVAIKEGALSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y LF +I +++ G +YE + ++RVI DH+R++ FL+A GI +NEGRGYVLRR Sbjct: 239 YGSSLFMPIIVDVQKLIGKEYEYVSGASYRVIADHIRTTVFLLAQGINFSNEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ E M L+ + MG Y L ++E + E+ RF KT++ Sbjct: 299 ILRRAVRHGYLLGFREAFMYKLVDTVVEIMGGEYDYLTVKATAVKEQIELEEARFFKTIE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + + L E +G+VAFKLYDT G PLD+ +D+L + L +D F + + Sbjct: 359 SGIALFEEEV--LSTKETFSGEVAFKLYDTFGFPLDLTEDMLKGKNLK-LDSAKFEELML 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR+RA+A G G T + L EK+G F+GY+ + S Sbjct: 416 EQRTRAKAAWKGSGDADTHGDFKELLEKFGENTFVGYEFMAHSC---------------- 459 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 V+A++ + + V K V+ D TPFYAE+GGQ GD G G Sbjct: 460 -------KVQALLDENFKSVSSLSPDTKGWVLLDITPFYAESGGQTGDCGELEGFAKVED 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 ++ G +V +R +++ +HSATHLLH L +LG Sbjct: 513 TRKFFGLNLSQISVIDELKIGT------VVDAKVDISRNEITKHHSATHLLHAILYDVLG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 H+SQ GS + D LRFD +H K +T EL IE VN+ + + +P T++M EDA S Sbjct: 567 DHISQAGSLVESDRLRFDFSHPKALTQTELVEIETRVNNDVLRAIPANTQVMGIEDAKNS 626 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A G KY D VRVVS + S CGG HV +T I I ES + AG+RR Sbjct: 627 GAKAQFGEKYGDEVRVVSFDR-----ASVEFCGGVHVDNTANIGSFIITKESGVSAGVRR 681 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ GQ A + Q +K + + +K +V+ + + +L+ + + Sbjct: 682 IEAVCGQAAYKYFCEQRSLVKEVEAEVK--NLDVLAGISRLKSNIAELKTELKEAQESSK 739 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 VE ++N ++ ++ E+ S ++K +D L+ + + ML + + K + + Sbjct: 740 VE----ITANEINGVAVVVEELASGDIKEKIDELKNQNEKLCAMLFQVKGD-KVLIAAGI 794 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A D + A +LGGGG GGRP AQ+GG + K +A F+ + Sbjct: 795 KN---ADAKAGDWIKEIAPILGGGG-GGRPDFAQAGGKDKTKLPEAKVEALKFITE 846 >gi|119961931|ref|YP_948021.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1] gi|119948790|gb|ABM07701.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1] Length = 918 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 325/926 (35%), Positives = 491/926 (53%), Gaps = 64/926 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+P Y Sbjct: 27 MKSQEITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRA 85 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT Sbjct: 86 TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDG 141 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L RL++TVY+ED+EA +LW K +G+ A++I R+ DN+WS + GP GPCSEI+ Sbjct: 142 GYGLPAERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIY 201 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + RYIEIWNLVFMQ++ + + LP+ +IDTG+G+ Sbjct: 202 YDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGM 260 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS Sbjct: 261 ERLAMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRS 320 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LIADG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 321 ALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVE 380 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDI 400 I +E++ F +T+ G L+ ++ + L+G AF L+DT+G P+D+ Sbjct: 381 TDFARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDL 440 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D F + EQR RA+A + G G + + G T F GY Sbjct: 441 TLEMAEEAGL-QVDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGY 499 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L G + V+ IV G V A +G ++E+V ++TPF Sbjct: 500 DELEG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPF 536 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAEAGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + ++ + +D + R Sbjct: 537 YAEAGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERR 596 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N Sbjct: 597 HAAEQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSN 656 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N V T++M +A A GA AL G Y VRVV + G S LCGGTHVS Sbjct: 657 IAIRNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEI----DGAWSRELCGGTHVS 712 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 713 NTSLIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRI 772 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVMD 814 + + + + + + + A V ++H +V + +L+++ Sbjct: 773 SSTLNKLKATEKELDRLRKEQLAAAAANLVGTAKDAAGVRVVAHDAGQVGGADDLRNLAL 832 Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 L+ ++ S + + G+S ++ ++ A L RL+A +LGGGG GG+ Sbjct: 833 DLRNRLGSEASTVAVAGVSNDRPVILIATNEAAREAGVKAGALVRLAAGILGGGG-GGKD 891 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG + K +A+ V + K Sbjct: 892 DVAQGGGTDAGKVSEALTAVVDAIAK 917 >gi|295839933|ref|ZP_06826866.1| alanine-tRNA ligase [Streptomyces sp. SPB74] gi|295827712|gb|EDY43697.2| alanine-tRNA ligase [Streptomyces sp. SPB74] Length = 866 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 325/902 (36%), Positives = 496/902 (54%), Gaps = 62/902 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH+++PS+SLI +DPTL+ +GMVPFK F G+ KP Sbjct: 1 MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F L+ RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + LP +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + +I + ++TG+ Y + V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGAAVASDVSLRVVSDHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + +E Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRVE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G +LD ++ +L G+ AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGEKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A S +G + + + + GAT F GY L G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+GDTG + +G ++I DVQK G+ VH V+ G + + + ID RR ++ Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQTRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + +A + +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 REMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RRIEA+ G A L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVSQLQELVKGRPEELPEKISGML 745 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + + + + ++ + ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIERFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTGADDLRRLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I ++ L ++ + +V+ F A DL R +AK LGGGG GG+P +A Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKALGGGG-GGKPDVA 864 Query: 876 QS 877 Q Sbjct: 865 QG 866 >gi|228471913|ref|ZP_04056683.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276765|gb|EEK15471.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624] Length = 877 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 329/925 (35%), Positives = 485/925 (52%), Gaps = 78/925 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP + V Sbjct: 1 MTSQEIRELFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGNAKPKQKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + Sbjct: 61 VDTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAITWAWELLTEVYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA+ +WK+ ++ D I+ DNFW M + GPCGPCS Sbjct: 121 KENLYVTVFEGSPEEGVPFDQEAYDIWKER--IAEDHILLGNKKDNFWEMGDQGPCGPCS 178 Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G + + + IEIWN VFM+F ++ LP ++DTGMG Sbjct: 179 EIHVDIRSDGEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPAQNVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 ER+ VLQ K +NYD D+F LI E++T +Y + + RVI DH+R Sbjct: 239 FERLCMVLQGKQSNYDTDVFTPLIHKVEEITKTRYTNGIQLTPEQEQINIAIRVISDHIR 298 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + SF IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MG +PE Sbjct: 299 AVSFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLTKQMGGTFPE 358 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + LLI ++ E+ F +TL++GL++LD ++ + + L+G AF+LYDT+G P D Sbjct: 359 LEKEFLLIVSVIKEEEASFLRTLEQGLLMLDVMIQNASDKQ-LSGSKAFELYDTYGFPKD 417 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + IL RG+ +D SF + L++Q+ R+RA + W L++ +FIG Sbjct: 418 LTALILSERGMT-LDEASFEEHLQKQKERSRAA-----AQVKAGDWVVLRDDEEE-EFIG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L + + RK VE G ++VF+ TP Sbjct: 471 YDTLEAMVRLVKYRK---------------------------VESQKDGTLYQLVFNTTP 503 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FY E GGQ+GD G L KK + +H A E + Sbjct: 504 FYPEGGGQVGDRGTLQAANGELIYITDTKKENNLIIHIA--EHLPENLNDPFKAEVHPMG 561 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R NHSATHLLH AL +LG+HV Q GS ++P+ LRFD +H +T EL +E V Sbjct: 562 RALAQSNHSATHLLHQALREVLGTHVEQKGSHVSPEALRFDFSHFAKLTPEELTEVERLV 621 Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + +P+ R + + A+ +GA AL G KY ++VR++ S LCGGTH Sbjct: 622 NKRIYEKIPLEEHRNIPIQQALEAGAMALFGEKYGEKVRMIQFGE------SRELCGGTH 675 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +TG+I IVSE ++ AG+RRIEAIT A H + Q++ L+ + LK + + + Sbjct: 676 VKNTGDIWFFKIVSEGAVAAGVRRIEAITNAGALKHFLLQEKLLEEIKGSLK-NPQDPIK 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVM 813 + + EE +L + K + + I+ V ++ + ++D LK + Sbjct: 735 SITNLQEENARLHKELEQLKREQAKQLKGELKGEFVTISGVQCLTKRL-DLDIATLKDLA 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871 L ++++ I+ ++ KA +L + ++L +A + R K + GGG GG+ Sbjct: 794 FMLGEEVKDAFILFGATQEDGKALLLCYINKELTQSKGLDAGKIVRELGKYIQGGG-GGQ 852 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P A +GG +A+ V + L Sbjct: 853 PFFATAGGRKPEGIAEALEKVKTLL 877 >gi|313888208|ref|ZP_07821882.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845898|gb|EFR33285.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 870 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 347/908 (38%), Positives = 519/908 (57%), Gaps = 50/908 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IRT FL+FF+ GH +LPS SLIP ND +L+ +GM P K FTG+E P Sbjct: 1 MKYLGLHDIRTEFLKFFESKGHFILPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEEIPPA 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D+DNVG T+RH TFFEMLGNFSFG YFK I AW+ LT Sbjct: 61 KRVTTCQKCIRTG----DIDNVGLTDRHATFFEMLGNFSFGDYFKHEVIPWAWEFLTVNL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + L++TVY ED+EA+ +WK + G+ +KIIR+ DNFW + E GP GPCSEI+ D Sbjct: 117 EIPKEDLWVTVYYEDDEAYNIWKDVVGIDEEKIIRLGKEDNFWEL-EVGPSGPCSEIYVD 175 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +G EG+R+IE+WNLVF QF++ + L +IDTGMGLER+ATVLQ Sbjct: 176 RGLEHGSEDERPGGEGDRFIEVWNLVFTQFDKDEEGNYKPLAHPNIDTGMGLERIATVLQ 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 N ++ID K +IQ +V+G KY + ++ RVI DH+R+ +F+I+D I+P+NEG Sbjct: 236 GTDNIFEIDAIKDIIQEIAKVSGKKYGQDKNADISFRVITDHIRAMTFMISDTIVPSNEG 295 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + R LG + + + G Y EL + + I+E +R E+E Sbjct: 296 RGYVLRRLIRRAARHGRKLGIERAFLYEIADMVINSWGEQYTELKENRESIKEIIRREEE 355 Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +T+D GLV L + + +++L+G+ AFKLYDT+G P+D+ ++IL G +D Sbjct: 356 KFLETIDGGLVRLKAHIDEMKENNEKLLDGEKAFKLYDTYGFPIDLTEEILREDGY-DVD 414 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F + +++Q+ RAR G + L E +F+GY+ Sbjct: 415 MEGFQKEMDDQKRRAREARNDSNVGWANQDNKHLFEGLSD-EFLGYE------------- 460 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + + I+ EIV+ GQ+ VV D+T FY E+GGQ+GDTG Sbjct: 461 ----------KDECDANITRIIADDEIVDSLEEGQEGLVVLDKTTFYGESGGQVGDTGEI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I D +L++TD +K +G+ +H VE G L + ID + R + NHS THLLH Sbjct: 511 ISDNFKLRVTDTKKTKDGLHLHLVKVEEGRLEK-APVKAIIDSKRRNNIRRNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV+Q GS + D +RFD +H +T E+ +E VN+ I + LPV T++ Sbjct: 570 RALKDVLGSHVNQAGSLVMADRMRFDFSHFDAMTKEEIAEVERRVNEKIFEGLPVETKVT 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A GA L KY D+VRV+S+ G +S LCGGTHVS+T EI + I+SES Sbjct: 630 GLEEAKEMGAIGLFEGKYQDQVRVLSM-----GDYSRELCGGTHVSNTSEISMFKILSES 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I G+RRIE+ITG +L K + +AS LK ++ ++ +++ + ++ Sbjct: 685 GISNGVRRIESITGPAVYEYLNNLSAKEEEIASELKSNKDEIIQKIKLNIKNLKEANKNL 744 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K + L + +S + + ++ VD L+ + D ++ K+ S +++L Sbjct: 745 EKLEHDLAKDQISDITGDVREKNGIKYVIKKFDGVDVNTLRDLADEVRNKLGS-VVVLFA 803 Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++DL+ + A L + AKV GGGG GGRP MA +G + +K ++A Sbjct: 804 AVNDDKLNFVCAVSKDLVDKKIAAGKLIKKIAKVAGGGG-GGRPDMATAGAKDLDKVEEA 862 Query: 889 IAGVASFL 896 + + L Sbjct: 863 LNKLDELL 870 >gi|168180547|ref|ZP_02615211.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916] gi|182668624|gb|EDT80603.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916] Length = 879 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 333/908 (36%), Positives = 515/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + +IL+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFKGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E E G + +V TPFYAE GGQ+GDTG Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++MN Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + IVSE+ Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIFKIVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|315160222|gb|EFU04239.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0645] Length = 880 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTYD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + I V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPEGIADALAEVENWL 877 >gi|207744018|ref|YP_002260410.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609] gi|206595420|emb|CAQ62347.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609] Length = 825 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 343/799 (42%), Positives = 470/799 (58%), Gaps = 52/799 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 14 MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRA 73 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 74 ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSE Sbjct: 134 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228 IF+D G I GG PGS E +G+RYIEIWN VFMQF++Q LP +DTGM Sbjct: 194 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G+ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI D Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 371 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ Sbjct: 372 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 431 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + T L T F GYD L Sbjct: 432 E-NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLVRE 484 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ V A+ G V+ GQ VV D TPFYAE+GG Sbjct: 485 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 522 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 523 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 582 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 583 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 643 AATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 697 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 756 Query: 767 YRKLQLIHAKRKLQLNVED 785 + L+ + K +L Sbjct: 757 VKTLEKELERLKSKLAASQ 775 >gi|30688660|ref|NP_680210.2| EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] gi|322510075|sp|Q9FFC7|SYAP_ARATH RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein EMBRYO DEFECTIVE 86; Flags: Precursor gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 978 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 317/928 (34%), Positives = 482/928 (51%), Gaps = 71/928 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + SIR FLEFF GH++LPSSSL+P DPT++ T +GM+ FK IF G+ T Sbjct: 79 SGDSIRRRFLEFFASRGHKVLPSSSLVPE-DPTVLLTIAGMLQFKPIFLGKVPREVPCAT 137 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+C+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L Sbjct: 138 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPA 193 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+++++Y++D+EAF++WK G+S ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 194 NRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 253 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + R+IE +NLVFMQ+ + L + +IDTG+GLER+A +LQ+ N Sbjct: 254 RGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I ++ + Y+ N + +VI DH+R+ +LI+DG+ P+N GRGY Sbjct: 314 NYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIGRGY 373 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMH--------LLPALCTEMGSAYPELIQAKLLIEETL 351 V+RR++RRA+ + LG + + + + ++ I E + Sbjct: 374 VVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRIIEEI 433 Query: 352 RSEDERFGKTLDRGLVLLDGVL-------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 R E+ F KTL+RG LLD L L+G AF LYDT G P++I ++ Sbjct: 434 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEITAEV 493 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 RG ID+ F +E QR +++A + + + + T+F+GYD L Sbjct: 494 AEERG-VSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDA--DMTKNIADTEFLGYDSL- 549 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 ++VK+++ G+ V G +VEV+ D+TPFYAE+ Sbjct: 550 ----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAES 587 Query: 525 GGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 GGQ+ D G + +K+ IFVH V+ G L + +D Sbjct: 588 GGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLKIFVHKGTVKSGALEVGKEVEAAVDADL 647 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R++ ++H+ATHLL AL ++G SQ GS + D LRFD ++ + EL+ IE + Sbjct: 648 RQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLI 707 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTH 698 N I + T+++ DA +GA A+ G KY+ + VRVV V S LCGGTH Sbjct: 708 NRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGTH 762 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +T EI I+SE I +GIRRIEA+ G+ ++ +D ++ L S LKV +V Sbjct: 763 VGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVTN 822 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--------VNFMSHIISEVDSKELK 810 RVE + EE R + + + + V S + + + + D+ LK Sbjct: 823 RVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSLK 882 Query: 811 SVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868 S + L ++ + +++G S E K S++ + ++ A AK+ GGGG Sbjct: 883 SAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG- 941 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+P+ AQ+GG A+ L Sbjct: 942 GGKPNFAQAGGRKPENLPSALEKAREDL 969 >gi|84496692|ref|ZP_00995546.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649] gi|84383460|gb|EAP99341.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649] Length = 897 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 330/924 (35%), Positives = 494/924 (53%), Gaps = 67/924 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF+KNGH ++PS+ LI +DP L+F N+GMVPFK F+GQE P ++ Sbjct: 1 METAEIRRRWLAFFEKNGHTVVPSAPLI-HDDPNLLFVNAGMVPFKPYFSGQETPPWERA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D++ VG+T+RH TFF+M GNFSFG YFK+ AI+ AW LLT Sbjct: 60 TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKKDAIRFAWQLLTTSQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ TVY++D+EA +LW + + + D+I+R DN+W M GP GPCSEIF Sbjct: 116 GYGLDPDRLWATVYEDDDEAERLWAEYTSIPLDRIVRRGKLDNYWHMGVPGPGGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+GE G G + + +RY+EIWNLVFMQ E + + LP +IDTGMGL Sbjct: 176 YDRGEEY-GVEGGPAVDEDRYMEIWNLVFMQEELSQVRAKDDFDIEGPLPAQNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ER+A+VLQ N Y+ID ++ + ++TG Y + V RV+ DH+R Sbjct: 235 ERIASVLQGVDNLYEIDEVYPVLAKAAEMTGKSYGANSGHSAQGSHPDDVRLRVVADHIR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SS LI DG+ P NEGRGYVLRR++RRA+ RLLG+ +P + HLLP M +YPEL Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRSMRLLGFEDPALPHLLPISMERMKQSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPL 398 I + +E+E F +TL G +LD +S + L GD AF+L+DT+G P+ Sbjct: 355 ETGFERISKIAYAEEEAFRRTLASGTTILDTAVSRTKESGGTTLAGDQAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ GL +D F + + EQR+RA+A + SG + G T F Sbjct: 415 DLTLEMAEEHGLT-VDREGFTRLMLEQRNRAKADAKSKKSGHANTEVWKELRTSGETDFR 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + L + V +V G VEE GQ+ +VV D+T Sbjct: 474 AWQELTS-----------------------EAKVVGLVVDGVRVEEIEPGQQGQVVLDRT 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE+GGQ+ D G DG+ L++ DVQ+ +G+ H V G LR +++ +D + Sbjct: 511 PFYAESGGQIADEGIITADGVHLKVMDVQRPVKGLIAHTVEVVHGPLRAGSAVLAEVDPE 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R HS TH++H AL +LG Q+GS P LR D + ++ IE+ Sbjct: 571 WRISACQAHSGTHVIHAALRQVLGPSALQSGSYNKPGYLRLDFAWGQALSPETRSEIEEV 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N + ++LPV + M+ A +GA AL G Y + VRVV + GG S LCGGTH Sbjct: 631 ANLAVRKDLPVSAQWMSLAQAREAGALALFGETYGEDVRVVEI----GGPWSRELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V + ++ L + ESS+ +G+RR+EA G A +L + + L+ + G + Sbjct: 687 VGHSSQVGALTVTGESSVGSGVRRLEAFVGMDALRYLARERAIVAELSGIVGAQPGELTE 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSV 812 RV + + + + + Q + + + V F+ H + +++++ Sbjct: 747 RVGAMVARLKDAERELERTRKQAVLAAAGSLSDNAKDVGGVRFVGHDAGGEAGADDVRAM 806 Query: 813 MDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 + ++K+ ++ + G +K + V+ A +L R++A+ LGGGG G Sbjct: 807 VLDARQKLGDAAPSVVAVTGGAKGRPVVVIATNQAARDKGIKAGELVRIAAQTLGGGG-G 865 Query: 870 GRPHMAQSGGPNGNKADQAIAGVA 893 G+ +AQ GG + K+ +AI V Sbjct: 866 GKDDIAQGGGQDIAKSGEAINAVE 889 >gi|302874705|ref|YP_003843338.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B] gi|307690682|ref|ZP_07633128.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B] gi|302577562|gb|ADL51574.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B] Length = 879 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 311/907 (34%), Positives = 508/907 (56%), Gaps = 48/907 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG KP + Sbjct: 4 MGLNELREAYLKFFESKEHLRLPSYSLVPKNDKSLLLINAGMAPLKPYFTGLSKPERNRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG T+RH TFFEMLGNFSFG YFK I AW+ +T+ + Sbjct: 64 TTCQKCVRTG----DIENVGITSRHATFFEMLGNFSFGDYFKNEVIPWAWEFVTEVLKMP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L++T+Y ED+EA+++W + + I R+ DNFW GPCGPC+EI F++G Sbjct: 120 KDKLFVTIYLEDDEAYEIWTTKTDVDKSHIFRLGKKDNFWEHG-AGPCGPCTEIHFNRGN 178 Query: 182 CI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + ++ + ++ IE WNLVF QF+ + L +IDTG GLER+A ++Q Sbjct: 179 AVVTTAEEFEAAADEDKIIEFWNLVFTQFDGDGEGNYEKLKSTNIDTGAGLERLAAIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K + +++D +++ +V G+KY N ++ R+I DH+RS +FLI+DG++P+NEGR Sbjct: 239 KESIFEVDTMNNILTEVTKVAGIKYGDNAKNDISIRIITDHVRSVTFLISDGVMPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG E + ++ + + AYPEL + I++ +R E++R Sbjct: 299 GYVLRRLLRRAARHGKQLGIKEAFLCNICDVVIRDSKEAYPELDEKADYIKKVIRLEEDR 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L + + ++ L G+ AFKLYDT+G P+++ Q+IL ID Sbjct: 359 FRETIDSGMEILMSYVEEMKQENSDTLAGEKAFKLYDTYGFPIELTQEILEEMNYK-IDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + + +QR RAR+ T+ + T+F GY Sbjct: 418 DGFTKEMNDQRERARSARETSNYMGTDIKVLDTISQDIKTEFDGY--------------- 462 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++S V I++ E V GQK ++ + TPFYAE GGQ+GDTG Sbjct: 463 --------GKTKLTSKVVMIIENDEFVNTIEEGQKGIILAEVTPFYAEMGGQIGDTGEIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + + D +K G H+ ++ G L + ++L +D + R ++ NH+ATH+++ Sbjct: 515 NENFKAIVIDTKKNISGKIAHYVEIKEGKLTLDEEIILQVDEKRRDEIRKNHTATHMINK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 ALS +LGSHV Q GS +T + LRFD +H +T E+ +E VND I + V T M+ Sbjct: 575 ALSLVLGSHVHQAGSLVTAERLRFDFSHFTAMTEEEIFKVEKLVNDEIEKLTEVNTEEMS 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A GA + KY+D VRVV+V G SS LCGG H+ + G+I L+ I SE+ Sbjct: 635 LAVAKEKGAVGIFDDKYSDVVRVVNV-----GDFSSELCGGIHIDNIGKIGLVKITSETG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG RRIEA+ G A ++ + + LK ++ LK +V R++ + + + + Sbjct: 690 IAAGTRRIEAVVGANAIQYMEEKAQLLKEASALLKTMPNEIVQRIQLLLSDVKDKEKEIE 749 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K +L + S ++ + ++ + +D+ L+ + D ++ K+ G+++L + Sbjct: 750 KLKSKLASGEEENILASVKEVKGIKVAAYALKGIDANGLRELADKVRDKVGDGLVVLGSV 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++K S++ + T++ +++ + + + + ++GGGG GGRP MAQ+GG + K ++AI Sbjct: 810 M-DEKVSLVAMATKEAVNKGIHCGKIIKEISAIVGGGG-GGRPDMAQAGGKDPAKVEKAI 867 Query: 890 AGVASFL 896 V + + Sbjct: 868 GEVLNIV 874 >gi|300860344|ref|ZP_07106431.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|300849383|gb|EFK77133.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|315145691|gb|EFT89707.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2141] Length = 880 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + I V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPEGIADALAEVENWL 877 >gi|322806901|emb|CBZ04471.1| alanyl-tRNA synthetase [Clostridium botulinum H04402 065] Length = 879 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 333/908 (36%), Positives = 515/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTNIVIENCYKNYPELEEKREYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + +IL+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E E G + +V TPFYAE GGQ+GDTG Sbjct: 467 ------------VKSKVTVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++MN Sbjct: 575 ALIEVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKKVEKVVNKEIMKANAVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + IVSE+ Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFIAMATKDTVAKGVHCGKIIKEVAAIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|58584618|ref|YP_198191.1| alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497910|sp|Q5GSS5|SYA_WOLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58418934|gb|AAW70949.1| Alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 875 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 375/892 (42%), Positives = 533/892 (59%), Gaps = 70/892 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR F++FF +N H+ + SS LIP +DPTLMFTN+GMV FKNIFTG +K + Sbjct: 1 MKLNEIRERFIKFFVRNNHKQVFSSPLIPEHDPTLMFTNAGMVQFKNIFTGIQKTDIKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+R GGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW +T+E LD Sbjct: 61 VSSQKCLRVGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL IT+Y D++++++W+K+SG S DKIIRI T+DNFWSM GPCGPCSEIF+D Sbjct: 121 KNRLSITIYHTDDKSYEIWRKVSGFSNDKIIRIATDDNFWSMGNIGPCGPCSEIFYDY-- 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + + +R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q Sbjct: 179 -----AKPNLQNDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERVAAVMQNVY 233 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF LI S++ G N H++I DHLR+++FLIA+G+LP NEGR Y+L Sbjct: 234 DNYDIDLFSALISKSQEYCG---NVENKAAHKIIADHLRAAAFLIAEGVLPGNEGRNYIL 290 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356 RR++RRA+ Y LGY +PL+ + P L MG YPELI+AK LIE TL+SE+E Sbjct: 291 RRLIRRAVRYIHQLGYNDPLLHRIFPVLIDSTSSAYMGGVYPELIRAKSLIETTLKSEEE 350 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F TL +G+ LL + L + L+G+ AFKLYDT+G PLDI DIL R D Sbjct: 351 NFKDTLIKGINLLKKFTTDLKPGDTLSGESAFKLYDTYGFPLDITLDILKER-KINFDQK 409 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A+EEQ+ RARA G G + E+IWF+L +K+G T+F+GY+ Sbjct: 410 GFDNAMEEQKERARAKWTGSGEKSIEQIWFNLIDKFGKTEFVGYE--------------- 454 Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + V I+ + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I Sbjct: 455 -------FSEVKDAKVLVILSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSFI 507 Query: 536 GDGIR---------------------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 I + I + K +++H IV+ G + + + + Sbjct: 508 IPSITPVLDTKIQKKNDRSCDRITEGIAIVENTNKVNDLYLHRCIVKSGSICKDDIVTAS 567 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D + R+ L NHSATHLLH AL ILG HV+Q GS I PD LRFD +H+ +T +L Sbjct: 568 TDKERRQNLRRNHSATHLLHFALRKILGDHVTQKGSLIAPDRLRFDFSHNTQVTRDQLSL 627 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IED VN +I +NL T+I + AI GA AL G KY D+VRVV++ S LC Sbjct: 628 IEDMVNSLIRENLSAFTKIQSMNQAIGEGAMALFGKKYGDQVRVVNIGD------SKELC 681 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTHV TGEI L I++E SI +G+RRIEA+TGQ A + + L+ +A +K Sbjct: 682 GGTHVERTGEIGLFKIITECSIASGVRRIEALTGQEAIDYARDNEINLRKIAELVKAPVN 741 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813 + R+ + +E ++ + +L + E++ +I +NF+SH +++ + ++ Sbjct: 742 EITSRLSILNQERKESETKIKSLYKKLVSAENIKSIEINGMNFVSHSFTDIPANIVREF- 800 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 LQ++ +I + K K +++ V++DL+D+ + +L + G Sbjct: 801 -TLQQQKPKTVIAFTAMEKN-KTVLIVKVSKDLVDKISTKELVSTVTGGVCG 850 >gi|257078902|ref|ZP_05573263.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294779572|ref|ZP_06744966.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1] gi|256986932|gb|EEU74234.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294453362|gb|EFG21770.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1] Length = 880 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 507/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDANGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + I V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|319644298|ref|ZP_07998792.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A] gi|317384193|gb|EFV65166.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A] Length = 871 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 488/918 (53%), Gaps = 74/918 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ V Sbjct: 1 MTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L +D Sbjct: 61 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPCS Sbjct: 121 PKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + IEIWNLVFMQF ++ LP IDTGMG Sbjct: 179 EIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 FERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSIT 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++ E+E F +TL+ G+ LLD + + + ++G AF LYDT G PLD+ + I Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L G+ ++ FN +++Q+ RAR + W ++KE G T F+GYD Sbjct: 419 LRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFTE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R++ + + ++V TPFYAE+ Sbjct: 471 YETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAES 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GDTG + + ++I D +K+ ++ ++ ++ +D + R + Sbjct: 503 GGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAACA 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 ANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKIR 619 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N+P+ R + E A GA AL G KY D VRVV S CGGTHV +TG Sbjct: 620 ENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPATG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SESS+ AG+RRIEAITG + + + L L + + ++ + + Sbjct: 674 KIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKY 732 Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E L+ K K L + +I V + II + + +K + L+ Sbjct: 733 IDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKG 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +I + + +++G K + ++++EDL+ NA L R +AK++ GG GGG+PH A + Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATA 850 Query: 878 GGPNGNKADQAIAGVASF 895 GG N + + A+ V Sbjct: 851 GGKNPDGLNAAVDKVIEL 868 >gi|157738295|ref|YP_001490979.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018] gi|205829978|sp|A8EWI6|SYA_ARCB4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157700149|gb|ABV68309.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018] Length = 851 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 346/896 (38%), Positives = 507/896 (56%), Gaps = 51/896 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR +LEFF+ GHE++ S L+P +DPTLMFTN+GMV FK+IFTG P + T+ Sbjct: 2 DIRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +T L + Sbjct: 61 QLCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183 L++TV++ D+EAF +W K ++ +I+R DNFWSM +TG CGPCSEIF+DQGE Sbjct: 121 LWVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + NN Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D FK +I+ E+++ NI ++RVI DHLR+ SF+++ GIL NEGR YVLRR Sbjct: 239 FDSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G+ +P M LL L MG Y EL++ K IEE L E++RF KT+D Sbjct: 299 ILRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTID 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L +I +G AFKLYDT+G PLD+ +D+L RGL +D+ F++ + Sbjct: 359 LGMSLFNEELEKT--KDIFSGVTAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 Q++ A+A G G + E + L EK+G+ +F+GY+ Sbjct: 416 NQKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYNNTTY------------------ 457 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V+ V+ D+TPFYA +GGQ GD G + + Sbjct: 458 -----KSKIIALLDEHFKEVKILEKDSTGWVMLDKTPFYATSGGQNGDIGALEDNKH-IA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 I + K G+ + V L+ S+ + NR +++ +HSATHLL AL +LG Sbjct: 512 IVEETTKFHGLNLSKVKVVNSSLKQGESVDAIVV--NRNEVAKHHSATHLLQSALKIVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 VSQ GS LRFD T+ K +T ++ +ED VN +IA+ + + E A Sbjct: 570 DTVSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ G KY D VRVVS E S CGGTHV +T +I YIV ES + AG+RR Sbjct: 630 GAIAMFGEKYGDVVRVVSFE-----DVSVEFCGGTHVRNTADIGSFYIVKESGVSAGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G A + K+ + + +K S +V+ ++++ E+ + L+ + + + Sbjct: 685 IEAVCGTAAIKYTKDIISKMNEIQAEVKNS--DVILGIKKLKEQIKDLKKEIETSQSKTS 742 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + I D + ++ D LK ++D + + I L+ +K+ K ++ Sbjct: 743 SP-IEETIINDTKVIVSVVENGD---LKKIVDDTKNANEKVAIFLL-QAKDDKVLIVAG- 796 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +++ A D + A ++GGGG GGRP AQ+GG + +K +A + K+ Sbjct: 797 SKNT--NIKAGDWIKNIAPIVGGGG-GGRPDFAQAGGKDTSKIQEAKTKALDYAKE 849 >gi|29375946|ref|NP_815100.1| alanyl-tRNA synthetase [Enterococcus faecalis V583] gi|227518645|ref|ZP_03948694.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|227553175|ref|ZP_03983224.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22] gi|229550130|ref|ZP_04438855.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|255972907|ref|ZP_05423493.1| alanyl-tRNA synthetase [Enterococcus faecalis T1] gi|255975962|ref|ZP_05426548.1| alanyl-tRNA synthetase [Enterococcus faecalis T2] gi|256762386|ref|ZP_05502966.1| alanyl-tRNA synthetase [Enterococcus faecalis T3] gi|256958870|ref|ZP_05563041.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5] gi|256965234|ref|ZP_05569405.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|257419191|ref|ZP_05596185.1| alanyl-tRNA synthetase [Enterococcus faecalis T11] gi|257422731|ref|ZP_05599721.1| alanyl-tRNA synthetase [Enterococcus faecalis X98] gi|307271131|ref|ZP_07552414.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|307273337|ref|ZP_07554582.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855] gi|307277483|ref|ZP_07558575.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|307279186|ref|ZP_07560244.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|312952383|ref|ZP_07771258.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|41018198|sp|Q835J8|SYA_ENTFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29343408|gb|AAO81170.1| alanyl-tRNA synthetase [Enterococcus faecalis V583] gi|227073902|gb|EEI11865.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|227177701|gb|EEI58673.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22] gi|229304716|gb|EEN70712.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|255963925|gb|EET96401.1| alanyl-tRNA synthetase [Enterococcus faecalis T1] gi|255968834|gb|EET99456.1| alanyl-tRNA synthetase [Enterococcus faecalis T2] gi|256683637|gb|EEU23332.1| alanyl-tRNA synthetase [Enterococcus faecalis T3] gi|256949366|gb|EEU65998.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5] gi|256955730|gb|EEU72362.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|257161019|gb|EEU90979.1| alanyl-tRNA synthetase [Enterococcus faecalis T11] gi|257164555|gb|EEU94515.1| alanyl-tRNA synthetase [Enterococcus faecalis X98] gi|306504311|gb|EFM73523.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|306505748|gb|EFM74926.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|306509864|gb|EFM78889.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855] gi|306512629|gb|EFM81278.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|310629767|gb|EFQ13050.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|315033782|gb|EFT45714.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0017] gi|315036867|gb|EFT48799.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0027] gi|315153346|gb|EFT97362.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0031] gi|315155877|gb|EFT99893.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0043] gi|315157956|gb|EFU01973.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0312] gi|315170069|gb|EFU14086.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1342] gi|315575565|gb|EFU87756.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309B] gi|315579993|gb|EFU92184.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309A] gi|323480614|gb|ADX80053.1| alanyl-tRNA synthetase [Enterococcus faecalis 62] gi|327535020|gb|AEA93854.1| alanine--tRNA ligase [Enterococcus faecalis OG1RF] gi|329571430|gb|EGG53117.1| alanine--tRNA ligase [Enterococcus faecalis TX1467] Length = 880 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + I V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|242310739|ref|ZP_04809894.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489] gi|239523137|gb|EEQ63003.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489] Length = 859 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 322/901 (35%), Positives = 501/901 (55%), Gaps = 58/901 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQ 59 M +R FLEFF+ GH++ S L+P +DP+L+FTN+GMV FK+IFTG+ P Sbjct: 8 MK--KDVRALFLEFFESKGHKVYESMPLVP-DDPSLLFTNAGMVQFKDIFTGKIPIPNPN 64 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 65 IATSAQLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKDAIAYAWEFVTEVLG 124 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + LY+TV++ D+EAF+LW K + +I R+ DNFW M +TGPCGPCSEIF DQ Sbjct: 125 FSKEALYVTVHENDDEAFELWTK--HIDPSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQ 182 Query: 180 GEC-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GE G +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ +L+ Sbjct: 183 GEENFNGPEDYFGGDGDRFLEIWNLVFMQYERDISGNLKPLPKPSIDTGMGLERVMALLE 242 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K +N+D LF LI EQ+ G KY + + RVI DH R+ +FL+A G+ EGRG Sbjct: 243 GKKSNFDSSLFMPLIAKVEQIVGQKYIYESGASFRVIADHARAVAFLLAQGVNFDKEGRG 302 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG +P + ++ ++C MG+ Y L + + I+ ++E+ERF Sbjct: 303 YVLRRILRRAIRHGYLLGMRKPFVYEVIDSVCENMGNHYRYLREKQEAIKMQCKAEEERF 362 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +T++ G+ L + L +L +++ +G+VAF+LYDT+G PLD+ QD+L G G+D+ Sbjct: 363 FETIENGMNLFNKELENLKKEKPNQLFSGEVAFRLYDTYGFPLDLTQDMLRENGF-GVDM 421 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 SF +++Q+ +A+A+ G G E + +L K+G +F+GY ++ Sbjct: 422 DSFEVCMQKQKEQAKANWKGSGDNIKEGDFKTLISKFGENEFVGYTTMQ----------- 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S + A++ + E A + V+ D+TPFY ++GG +GD G + Sbjct: 471 ------------FKSKISALLDEN-FKEVAKLQGEGYVMLDKTPFYPQSGGPIGDKGVIL 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ + + I L +V + + +++ +HSATHLLH Sbjct: 518 DSNSKVLAEVMDTRKYFGLNISQIKALESLVVGQEVVAQVSQER-LEIAKHHSATHLLHK 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H++Q GS + + LRFD +H K ++ E++ IE VN+ I + P + M+ Sbjct: 577 ALREVLGEHIAQAGSLVESNRLRFDFSHPKALSYEEIEKIEILVNEKICLSNPQICETMD 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A A GA AL G KY VRV++ S LCGG HV +T I YI+ ES Sbjct: 637 IDSAKAKGAMALFGEKYGKNVRVITFGD------SIELCGGIHVENTANIGSFYIIKESG 690 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+ G+ A + ++ LK +++ +++ E+ + L+ + Sbjct: 691 VSSGVRRIEAVCGKAAYEYGKKALVEIAKAKEELKAQ--DLLEGIKKQKEQIKSLK---S 745 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + + ++L I V + + + + K L +D + K + I+L+ + K Sbjct: 746 QSTTKATTQNLQIEDINGVCVIIQSVDDAEMKTL---VDNAKNKYEKVAILLI--DTQGK 800 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ V ++ A + A+V+ GG GGGR A +GG + K +A+ Sbjct: 801 --IVAGV-KNAT--IKAGSWVKEVAQVM-GGNGGGRDDFATAGGKDTQKIKEALQRAREI 854 Query: 896 L 896 + Sbjct: 855 V 855 >gi|150004460|ref|YP_001299204.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482] gi|205829986|sp|A6L1L8|SYA_BACV8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149932884|gb|ABR39582.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482] Length = 871 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 488/918 (53%), Gaps = 74/918 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ V Sbjct: 1 MTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L +D Sbjct: 61 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY TV++ D EA W++ L D I+ +DNFW M +TGPCGPCS Sbjct: 121 PKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + IEIWNLVFMQF ++ LP IDTGMG Sbjct: 179 EIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 FERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSIT 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++ E+E F +TL+ G+ LLD + + + ++G AF LYDT G PLD+ + I Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L G+ ++ FN +++Q+ RAR + W ++KE G T F+GYD Sbjct: 419 LRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFTE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R++ + + ++V TPFYAE+ Sbjct: 471 YETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAES 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GDTG + + ++I D +K+ ++ ++ ++ +D + R + Sbjct: 503 GGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAACA 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 ANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIR 619 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N+P+ R + E A GA AL G KY D VRVV S CGGTHV +TG Sbjct: 620 ENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPATG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SESS+ AG+RRIEAITG + + + L L + + ++ + + Sbjct: 674 KIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKY 732 Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E L+ K K L + +I V + II + + +K + L+ Sbjct: 733 IDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKG 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +I + + +++G K + ++++EDL+ NA L R +AK++ GG GGG+PH A + Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATA 850 Query: 878 GGPNGNKADQAIAGVASF 895 GG N + + A+ V Sbjct: 851 GGKNPDGLNAAVDKVIEL 868 >gi|315636586|ref|ZP_07891820.1| alanine--tRNA ligase [Arcobacter butzleri JV22] gi|315479095|gb|EFU69794.1| alanine--tRNA ligase [Arcobacter butzleri JV22] Length = 851 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 346/896 (38%), Positives = 507/896 (56%), Gaps = 51/896 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR +LEFF+ GHE++ S L+P +DPTLMFTN+GMV FK+IFTG P + T+ Sbjct: 2 DIRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +T L + Sbjct: 61 QLCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183 L++TV++ D+EAF +W K ++ +I+R DNFWSM +TG CGPCSEIF+DQGE Sbjct: 121 LWVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + NN Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D FK +I+ E+++ NI ++RVI DHLR+ SF+++ GIL NEGR YVLRR Sbjct: 239 FDSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G+ +P M LL L MG Y EL++ K IEE L E++RF KT+D Sbjct: 299 ILRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTID 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L +I +G AFKLYDT+G PLD+ +D+L RGL +D+ F++ + Sbjct: 359 LGMSLFNEELEKT--KDIFSGITAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMN 415 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 Q++ A+A G G + E + L EK+G+ +F+GY+ Sbjct: 416 NQKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYNNTTY------------------ 457 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S + A++ + + V+ V+ D+TPFYA +GGQ GD G + + Sbjct: 458 -----KSKIIALLDEHFKEVKILEKDSTGWVMLDKTPFYATSGGQNGDIGALEDNKH-IA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 I + K G+ + V L+ S+ + NR +++ +HSATHLL AL +LG Sbjct: 512 IVEETTKFHGLNLSKVKVVNSSLKQGESVDAIVV--NRNEVAKHHSATHLLQSALKIVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 VSQ GS LRFD T+ K +T ++ +ED VN +IA+ + + E A Sbjct: 570 DTVSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ G KY D VRVVS E S CGGTHV +T +I YIV ES + AG+RR Sbjct: 630 GAIAMFGEKYGDVVRVVSFE-----DVSVEFCGGTHVRNTADIGSFYIVKESGVSAGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G A + K+ + + +K S +V+ ++++ E+ + L+ + + + Sbjct: 685 IEAVCGTAAIKYTKDIISKMNEIQAEVKNS--DVILGIKKLKEQIKDLKKEIETSQSKTS 742 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + I D + ++ D LK ++D + + I L+ +K+ K ++ Sbjct: 743 SP-IEETIINDTKVIVSVVENGD---LKKIVDDTKNANEKVAIFLL-QAKDDKVLIVAG- 796 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +++ A D + A ++GGGG GGRP AQ+GG + +K +A + K+ Sbjct: 797 SKNT--NIKAGDWIKNIAPIVGGGG-GGRPDFAQAGGKDTSKIQEAKTKALDYAKE 849 >gi|256618959|ref|ZP_05475805.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] gi|256598486|gb|EEU17662.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] Length = 880 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 346/918 (37%), Positives = 509/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + ++ V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDIKEVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|260434774|ref|ZP_05788744.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109] gi|260412648|gb|EEX05944.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109] Length = 889 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 330/907 (36%), Positives = 496/907 (54%), Gaps = 53/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F+ + GH+ + S+SLIP DPT++ T +GM+PFK +F GQ++ T Sbjct: 16 SGEEIREAFLNFYAERGHKRMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQERPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T + +D Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVYGIDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 191 L-GNEGIDLEDDDRFIEFYNLVFMQYNRDAEGILTPLANRNIDTGMGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ + G+ Y N + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADLAGVDYHHLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + A+P +I+ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ ++G AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 370 ETLERGEKLLAEVLASKPTQ--ISGAQAFELYDTYGFPLELTQEIAEEQGL-AVDLDGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQR RA+A ++ + + I + ++ AT F GY+ L Sbjct: 427 AAMEEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFDGYEALDHD------------- 472 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+V GE A +G V+VV D TPFY E GGQ+GD G G Sbjct: 473 ----------SCVQALVVNGEPASTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLSGSD- 521 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + ++ +FVH VERG L ++ +D RR+ NH+ATHLL AL Sbjct: 522 LIVRIESVSRSRDVFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQ 581 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD +T+ +L+ +E +N I + + + M + A Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHCPTAVTADQLQQVETLINGWINEAHALQVQEMAIDQA 641 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV+ES + AG Sbjct: 642 KAAGAVAMFGEKYADLVRVVDVPG-----VSMELCGGTHVANTAEIGLFKIVAESGVAAG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIH 774 IRRIEA+ G ++L +D +K L K +V RV + EE + Sbjct: 697 IRRIEAVAGPAVLAYLNERDSVVKQLGDRFKAQPAEIVDRVAALQEELKATGRALAAAQA 756 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 + + D + + VD L+ +L ++ G +++G + Sbjct: 757 ELAVAKAGALAAKAEALGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDP 816 Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++ + ++ + A AK GGGG GGRP++AQ+GG +G A+ Sbjct: 817 GEMGKVILVAAFGKQVIAAKLQAGKFIGGIAKQCGGGG-GGRPNLAQAGGRDGAALPAAL 875 Query: 890 AGVASFL 896 S L Sbjct: 876 EFARSEL 882 >gi|257082652|ref|ZP_05577013.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol] gi|256990682|gb|EEU77984.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol] Length = 880 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 509/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D+G + V KKA H + L L +D + R ++ Sbjct: 507 QIADSGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + I V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|253570246|ref|ZP_04847655.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6] gi|251840627|gb|EES68709.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6] Length = 872 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 325/919 (35%), Positives = 481/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRDSFKNFFETKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLEQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ FN +++Q+ RAR + W +L+E G T+F+GYD Sbjct: 419 ILRENGMTVNIEE-FNTEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V D TPFYAE Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + +++ D +K+ ++ E ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I Sbjct: 560 AANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+P+ R + E+A GA AL G KY +RVRV+ S CGG HV++T Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I ++ I+SESS+ AG+RRIEA TG R L + + L S + ++ + + Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE L+ K K E L + +I + + + ++ +K++ L+ Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I + + G K + ++++++L+ A +L + +AK++ GG GGG+PH A Sbjct: 792 GEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 851 AGGKNTDGLNAAIEKVLEL 869 >gi|315150647|gb|EFT94663.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0012] Length = 880 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 346/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINETFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + + V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|169629935|ref|YP_001703584.1| alanyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977] gi|169241902|emb|CAM62930.1| Alanyl-tRNA synthetase [Mycobacterium abscessus] Length = 891 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 321/925 (34%), Positives = 482/925 (52%), Gaps = 65/925 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYNTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIRLAWTLLTNPVSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L+ TVY +D+EA LW++++GL D+I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGFDPEKLWATVYLDDDEAIGLWQEVAGLPLDRIQRRGMADNYWSMGIPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G + E RYIEIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTSKTDFEILGPLPRQNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL + +I V Y + V +RVI DH R+++ +I Sbjct: 235 ERIACLLQGVDNVYETDLVRPVIDCVAAVAPRGYGQGNHEDDVRYRVIGDHARTAAIIIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGYVLRR++RR + +LLG +P+M L+ + EMG +YPEL+ I Sbjct: 295 DGVSPGNEGRGYVLRRLLRRIIRSTKLLGVEKPMMGELMAVVRDEMGPSYPELVTDFERI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L + L+G AF L+DT+G P+++ ++ Sbjct: 355 SRIAVAEETAFNRTLASGSKLFEDAADKTKTAGKSTLSGSDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL+ +D F + + EQR RA+A + + + G T+F G+D L Sbjct: 415 AEAGLS-VDEKGFRELMNEQRQRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDELDS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + I G V A +G + E+V D+TP YAE+G Sbjct: 474 A-----------------------ARILGIFVDGARVPVASAGSEAEIVLDRTPLYAESG 510 Query: 526 GQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GQ+ D G GDG + +++DVQK A+ +FVH VE G +V ++D R Sbjct: 511 GQIADVGSIRGDGANATSQAKVSDVQKIAKTLFVHKVTVESGEFVEGDQVVASVDPHWRH 570 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + HS TH++H AL +LG + Q GS P LRFD + ++ A+ + +ED N Sbjct: 571 GATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGALSEAQRQEVEDVANK 630 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + N PV T + + + A + GA AL G Y DRVRVV + GG S LCGGTHV+ Sbjct: 631 AVEANYPVNTFVTDLDQAKSMGAMALFGENYGDRVRVVDI----GGPFSLELCGGTHVAH 686 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 + +I + ++ ESS+ +G+RR+EA G A +L + + +L+S LKV V GRV Sbjct: 687 SSQIGPVTLLGESSVGSGVRRVEAYVGLDAVRYLSKERALMAALSSSLKVPSEEVPGRVA 746 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMDA 815 + E + + + +L ++ +I V ++H + + +L+S++ Sbjct: 747 TLVERLKVAEKELEQTRLASVKASIATLVDNAERIGSVTVVAHRLPDGTGAGDLRSLVGD 806 Query: 816 LQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 ++ ++ S ++ L+ E ++ V + D A DL + G GGG+ Sbjct: 807 IRGRLGSDPAVVALIAA-GEGSVPFVVSVNQAAQDAGLRANDLVGAIGPAV-DGRGGGKA 864 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 AQ G + D A+ + + ++ Sbjct: 865 DTAQGSGKDPAGIDAALQALRAQIR 889 >gi|257085361|ref|ZP_05579722.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1] gi|257086856|ref|ZP_05581217.1| alanyl-tRNA synthetase [Enterococcus faecalis D6] gi|257089773|ref|ZP_05584134.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188] gi|257415989|ref|ZP_05592983.1| alanyl-tRNA synthetase [Enterococcus faecalis AR01/DG] gi|307288125|ref|ZP_07568135.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|312900645|ref|ZP_07759942.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|312904123|ref|ZP_07763291.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|256993391|gb|EEU80693.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1] gi|256994886|gb|EEU82188.1| alanyl-tRNA synthetase [Enterococcus faecalis D6] gi|256998585|gb|EEU85105.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188] gi|257157817|gb|EEU87777.1| alanyl-tRNA synthetase [Enterococcus faecalis ARO1/DG] gi|306500861|gb|EFM70179.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|310632599|gb|EFQ15882.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|311292126|gb|EFQ70682.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|315027379|gb|EFT39311.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2137] gi|315147876|gb|EFT91892.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4244] gi|315164259|gb|EFU08276.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1302] gi|315166647|gb|EFU10664.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1341] gi|315578468|gb|EFU90659.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0630] Length = 880 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 346/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + + V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|170758241|ref|YP_001787882.1| alanyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree] gi|205830034|sp|B1KXB7|SYA_CLOBM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169405230|gb|ACA53641.1| alanine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree] Length = 879 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 330/908 (36%), Positives = 514/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI F++ Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFNRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + ++L+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E E G + +V TPFYAE GGQ+GDTG Sbjct: 467 ------------VKSKVAVIIKDEEFKNEIEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ R + NH+ATH+LH Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEGRRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++MN Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + +VSE+ Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKVVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVASIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] Length = 978 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 315/928 (33%), Positives = 482/928 (51%), Gaps = 71/928 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + SIR FLEFF GH++LPS+SL+P DPT++ T +GM+ FK IF G+ T Sbjct: 79 SGDSIRRRFLEFFASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPREVPCAT 137 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+C+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L Sbjct: 138 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIRWAWELSTIEFGLPA 193 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+++++Y++D+EAF++WK G+ ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 194 NRVWVSIYEDDDEAFEIWKNEVGVPVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 253 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + R+IE +NLVFMQ+ + L + +IDTG+GLER+A +LQ+ N Sbjct: 254 RGSDDDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I ++ + Y+ N + +VI DH+R+ +LI+DG+ P+N GRGY Sbjct: 314 NYETDLIYPIIAKISELANISYDSANEKAKTSLKVIADHIRAVVYLISDGVSPSNIGRGY 373 Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 V+RR++RRA+ + LG E + + + ++ I E + Sbjct: 374 VVRRLIRRAVRKGKSLGINEYRNGNLKGAFLPAVAEKVIELSTYIDSDVKLKAPRIIEEI 433 Query: 352 RSEDERFGKTLDRGLVLLDGVL-------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 R E+ F KTL+RG LLD L L+G AF LYDT+G P++I ++ Sbjct: 434 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKNTPYLDGKDAFLLYDTYGFPVEITAEV 493 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 RG ID+ F +E QR +++A + + + + T+F+GYD L Sbjct: 494 AEERG-VSIDMKGFEVEMENQRRQSQAAHNVVKLTVEDDA--DITKNIADTEFLGYDSL- 549 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 ++VK+++ G+ V + G KVE++ D+TPFYAE+ Sbjct: 550 ----------------------SARAVVKSLLVDGKPVIKVSEGSKVEILLDRTPFYAES 587 Query: 525 GGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 GGQ+ D G + +K+ IFVH V+ G L + +D Sbjct: 588 GGQIADHGFLYVNSDGNQENAVVEVSDVQKSLKIFVHKGTVKSGALEVGKEVEAAVDADL 647 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R++ ++H+ATHLL AL ++G SQ GS + D LRFD ++ + ELK IE + Sbjct: 648 RQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNINRSLHDNELKEIERLI 707 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTH 698 N I + T+++ DA +GA A+ G KY+ + VRVV V S LCGGTH Sbjct: 708 NRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGTH 762 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +T EI I+SE I +GIRRIEA+ G+ ++ +D ++ L S LKV V+ Sbjct: 763 VGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEKVIE 822 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--------VNFMSHIISEVDSKELK 810 VE + +E R + + + + V S + + + + D+ LK Sbjct: 823 TVENLLKELRAAKKEASDLRSKAAVYKASVISKNAFTVGTSQTIRVLVDSMDDTDADSLK 882 Query: 811 SVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868 S + L ++ + +++G S E K S++ + ++ A AK+ GGGG Sbjct: 883 SAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG- 941 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+P+ AQ+GG A+ L Sbjct: 942 GGKPNFAQAGGRKPENLPSALEKAREDL 969 >gi|256853016|ref|ZP_05558386.1| alanyl-tRNA synthetase [Enterococcus faecalis T8] gi|307291365|ref|ZP_07571249.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|256711475|gb|EEU26513.1| alanyl-tRNA synthetase [Enterococcus faecalis T8] gi|306497596|gb|EFM67129.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|315030000|gb|EFT41932.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4000] Length = 880 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 346/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGDVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + + V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|296117815|ref|ZP_06836398.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969046|gb|EFG82288.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306] Length = 902 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 327/923 (35%), Positives = 490/923 (53%), Gaps = 63/923 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61 IR F + F +GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P Y Sbjct: 14 THEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPYPNGLA 72 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT Sbjct: 73 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWALLTNSVDDG 128 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F L+ RL++TVY +D+EA +W G+ ++I R+ DN+WSM GPCGPCSEI+ Sbjct: 129 GFGLEPDRLWVTVYLDDDEAADIWHDKVGVPKERIQRMGMEDNYWSMGVPGPCGPCSEIY 188 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGL 230 +D+G G G + RY+EIWNLVFMQ + K I LPK +IDTGMG+ Sbjct: 189 YDRGPEY-GVEGGPEADDNRYMEIWNLVFMQNIRGEGDGKGNFEILGELPKKNIDTGMGV 247 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----NIVNHRVIVDHLRSSSFL 285 ER+A +LQ N Y+ DL +I +E+VTG YE N V RVI DH R++ L Sbjct: 248 ERVACILQNVDNVYETDLLAPVIAEAEKVTGASYEDPKAERINDVRFRVIADHSRTAMML 307 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG+ P+NEGRGY+LRR++RR + ARLLG ++ + + M +YPE+ Q + Sbjct: 308 ILDGVTPSNEGRGYILRRLVRRIIRSARLLGAQAEVLERFMNTIMDTMELSYPEIAQNRE 367 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I +E++ F KTL+ G D + ++ GD AF+L+DT+G P+D+ + Sbjct: 368 RILRVALNEEKSFLKTLESGTHRFDEVAAAAKSQGKTVVKGDEAFELHDTYGFPIDLTLE 427 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D+ SF+ A+ +QR RA+A + G ++ + T F GY+ L Sbjct: 428 MAAEAGL-DVDMDSFDAAMAQQRERAKADNRAKKHGHADETLYREWVDNQPTIFTGYEEL 486 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + V +V+ GE V A G+++EV+ D +P YAE Sbjct: 487 ASD-----------------------AKVIGLVRDGEKVTSAGEGEQIEVILDHSPLYAE 523 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ D G G L + DVQK + ++VH A V G L ++ +D Q R Sbjct: 524 SGGQMADRGRIFTGGTVLDVNDVQKIGKKLWVHKATVASGGLDLGSAVTAEVDQQWRHGA 583 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H+ATHL+H AL +LG Q GS P LRFD +++ +++ +L I N + Sbjct: 584 TQAHTATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSADQLDEIALIANQAV 643 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L V T + E+A A GA AL G Y + VRVV + GG S LCGGTHV+ + Sbjct: 644 DSDLAVNTIETSLEEAKAMGAMALFGENYGNNVRVVEI----GGPFSIELCGGTHVAHSS 699 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + ++ ESS+ +G RRIEA +G A + + + +++ LKV ++ GR+ + Sbjct: 700 QIGPVSVLGESSVGSGARRIEAYSGMDAFKYYSKEAALVDAVSKDLKVPSDDLPGRIAAL 759 Query: 764 WEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQ 817 ++ ++ + AK + + I ++ + V + +L+++ L+ Sbjct: 760 TDKLKQAEKEIAKLHQAQLQAKSAEFVAQAQDINGFKVLTLDLPQGVAAGDLRTLATDLR 819 Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++Q+ II+L S +K + + + D+ +L + + G GGG+P MA Sbjct: 820 NRMQNEDAIIVLAAASGDKLPFIAAATKSAVARGVKSGDIVKLFGEYV-DGRGGGKPDMA 878 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q G N +Q A V F K Sbjct: 879 QGAGNNPGGVEQGFAAVRDFADK 901 >gi|148380519|ref|YP_001255060.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|153932600|ref|YP_001384806.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|153937856|ref|YP_001388276.1| alanyl-tRNA synthetase [Clostridium botulinum A str. Hall] gi|205830027|sp|A7FWJ5|SYA_CLOB1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830031|sp|A5I4Z5|SYA_CLOBH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148290003|emb|CAL84122.1| putative alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|152928644|gb|ABS34144.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|152933770|gb|ABS39269.1| alanine--tRNA ligase [Clostridium botulinum A str. Hall] Length = 879 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 333/908 (36%), Positives = 515/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDMDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + +IL+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E E G + +V TPFYAE GGQ+GDTG Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++MN Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + IVSE+ Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIFKIVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|257126597|ref|YP_003164711.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] gi|257050536|gb|ACV39720.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] Length = 871 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 327/912 (35%), Positives = 514/912 (56%), Gaps = 58/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F++FF+ H+ S+SLIP +D +L+ T +GMVPFK F G+++ ++ + Sbjct: 1 MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK L+ Sbjct: 60 TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLE 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178 + RL+++VY D+EA+++W K G+ A++I+R+ DN+W+ G CGPCSEI++D Sbjct: 116 EDRLWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G+ ++G+R++EIWNLVF ++ + LP+ +IDTG GLER+A+V+Q Sbjct: 176 MGKNNEEADRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K NN+D DLF ++ + + V ++ N ++I DH+R+S FLI DG+LP+NEGRG Sbjct: 236 NKDNNFDTDLFTNITKGIKSVLEIQ-GNENEEAIKIIADHVRASVFLIGDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 Y+LR+I+RRA ++ + + L+P + M AYPEL + + IE+ +R Sbjct: 295 YILRKIIRRAFGAGSAAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRL 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF TL G +L+ + L + L ++ FKLYDT G P ++ + IL +G Sbjct: 355 EEERFATTLKNGTEMLEEEIQKLKGENQKELPAELTFKLYDTFGFPFELTKLILENQGFE 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + F + L EQ R++ + ++ EK+G T+F GY + Sbjct: 415 ASEEE-FEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGY---------LQ 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + + I + G+S E++FD+TPFYAE+GGQ+ DT Sbjct: 465 NYEEKSKLLHIAKSEGISG--------------------YEMIFDKTPFYAESGGQVADT 504 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++ +V KK + I+ + + + ID R+ + NH+ATH Sbjct: 505 GIITSGEFEGKVVNVVKKHDVFIHQVEIIRGIAPAVGVEVKMQIDVNRRKDIQRNHTATH 564 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH L LG+HV Q+GS + + LRFD +H + I+ ++ IE VNDII NL V Sbjct: 565 ILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAISPEMIEKIEKGVNDIILSNLQVKI 624 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 N EDA A GA AL KY D VRVV ++ +S LCGGTHV STGEI L I Sbjct: 625 NYENIEDAKARGAMALFSDKYGDIVRVVEIDG-----YSIELCGGTHVKSTGEIGLFNIE 679 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ I +G RRI A TG ++ +++ +EK+K ++ + + NVV +E+ + R Sbjct: 680 SENGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAV 739 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +H + + +L ++ + + V + + + ELK ++D ++K+QSGI++ Sbjct: 740 KVHEEMQTKLVKYEINEMLENVETVNGVKVLKRSFVDKNVDELKEIVDRGKEKMQSGIVI 799 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + KA ++ VT+DL+ + A ++ + A + GG GGGRP AQ+GG NG+ Sbjct: 800 L-GTNNNGKAVFVVGVTKDLISKVKAGEIVK-VAAQVAGGNGGGRPDFAQAGGKNGSAVK 857 Query: 887 QAIAGVASFLKK 898 +A+ F+ + Sbjct: 858 EAVEKAFEFVTE 869 >gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 954 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 317/928 (34%), Positives = 482/928 (51%), Gaps = 71/928 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + SIR FLEFF GH++LPSSSL+P DPT++ T +GM+ FK IF G+ T Sbjct: 55 SGDSIRRRFLEFFASRGHKVLPSSSLVPE-DPTVLLTIAGMLQFKPIFLGKVPREVPCAT 113 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+C+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L Sbjct: 114 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPA 169 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+++++Y++D+EAF++WK G+S ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 170 NRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 229 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + R+IE +NLVFMQ+ + L + +IDTG+GLER+A +LQ+ N Sbjct: 230 RGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 289 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I ++ + Y+ N + +VI DH+R+ +LI+DG+ P+N GRGY Sbjct: 290 NYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIGRGY 349 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMH--------LLPALCTEMGSAYPELIQAKLLIEETL 351 V+RR++RRA+ + LG + + + + ++ I E + Sbjct: 350 VVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRIIEEI 409 Query: 352 RSEDERFGKTLDRGLVLLDGVL-------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 R E+ F KTL+RG LLD L L+G AF LYDT G P++I ++ Sbjct: 410 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEITAEV 469 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 RG ID+ F +E QR +++A + + + + T+F+GYD L Sbjct: 470 AEERG-VSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDA--DMTKNIADTEFLGYDSL- 525 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 ++VK+++ G+ V G +VEV+ D+TPFYAE+ Sbjct: 526 ----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAES 563 Query: 525 GGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 GGQ+ D G + +K+ IFVH V+ G L + +D Sbjct: 564 GGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLKIFVHKGTVKSGALEVGKEVEAAVDADL 623 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R++ ++H+ATHLL AL ++G SQ GS + D LRFD ++ + EL+ IE + Sbjct: 624 RQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLI 683 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTH 698 N I + T+++ DA +GA A+ G KY+ + VRVV V S LCGGTH Sbjct: 684 NRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGTH 738 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +T EI I+SE I +GIRRIEA+ G+ ++ +D ++ L S LKV +V Sbjct: 739 VGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVTN 798 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--------VNFMSHIISEVDSKELK 810 RVE + EE R + + + + V S + + + + D+ LK Sbjct: 799 RVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSLK 858 Query: 811 SVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868 S + L ++ + +++G S E K S++ + ++ A AK+ GGGG Sbjct: 859 SAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG- 917 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+P+ AQ+GG A+ L Sbjct: 918 GGKPNFAQAGGRKPENLPSALEKAREDL 945 >gi|257063513|ref|YP_003143185.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476] gi|256791166|gb|ACV21836.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476] Length = 889 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 322/929 (34%), Positives = 488/929 (52%), Gaps = 79/929 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQ 59 + IR +L+FF+ + LPSSSLIP +DP+L+ T++GMV FK F + P Y Sbjct: 4 MTTAEIREKYLKFFEGKACKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPAYV 62 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TVQKCVR ND+D +G T RH +FFEMLGNFSFG YFK+ AW+ E + Sbjct: 63 GAATVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGKYFKKEMCAWAWEFCLNELE 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + +LY TV+++D+E ++WK + G+ I R+ +DNFW TGPCGPCSEI++DQ Sbjct: 119 LPKEKLYFTVFEDDDETIEIWKSL-GVEDSHISRLGEDDNFWRAGPTGPCGPCSEIYYDQ 177 Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G G P + +R++E WN VF Q++ Q LP +IDTGMGLERMA ++ Sbjct: 178 GPEFGCGDPNCAPGCDCDRFLEFWNCVFTQYDGQEDGTLAPLPTKNIDTGMGLERMAAIM 237 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY------------EGNNIVNHRVIVDHLRSSSFL 285 Q +N+D D+ + LI E+++G Y +G+ ++ R+ DH RS +F+ Sbjct: 238 QGVQSNFDTDVIRGLIAVGERLSGKSYVGKANTVGHGSEQGDIDLSLRICADHSRSVAFM 297 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 IADGILP+NEGRGYVLRR++RRA+ + R LG + + + MG YPE+++ + Sbjct: 298 IADGILPSNEGRGYVLRRLLRRAVMHGRKLGIEGAFLNEYVAVIVDLMGHVYPEIVENRA 357 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 L+E + SE+ F TL +G L L +L L+GDVAFKL+DT+G P+++ ++I Sbjct: 358 LVESVIASEEGAFANTLRQGQAYLAEALKNLE-GTTLSGDVAFKLHDTYGFPVEVTEEIC 416 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDL 462 G +D F + + EQR RARA + I+ L ++ G T+F+GY+ Sbjct: 417 SESG-ISVDHARFEECMNEQRERARAATKDDAEAAWSTYGSIYADLLKELGPTKFVGYEG 475 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + +KAI++ GE+V G++ E+V D TPFYA Sbjct: 476 TDYEG----------------------ATIKAIIRNGELVGSLHRGEEGEIVLDTTPFYA 513 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRR 581 E GG++GDTG G ++ D + +G+ H V G + ++ ++D Q R Sbjct: 514 EMGGEVGDTGMLHGTFGVSEVLDTKAPEKGLVCHRVRVIEGDCHAVDETVNASVDAQRRA 573 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG HV Q GS + PD LRFD TH + +T ++ +E N+ Sbjct: 574 LITRNHTATHLLHAALREVLGDHVKQKGSYVGPDRLRFDFTHFEGMTPEQIAEVERVANE 633 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + Q +P + A +G AL G KY D VRVV + G S LCGG HVS+ Sbjct: 634 KVMQAIPTTIYETSLNAAREAGVTALFGEKYGDTVRVV-----EAGEFSRELCGGCHVSN 688 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T EI + IVSE S A +RRIEA+T A +++ + +LK A+ L+V +V R Sbjct: 689 TAEIGFIKIVSEGSSAANVRRIEALTSVEALNYMNAVEAELKETAAELRVPMFDVSERTA 748 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSVMDAL 816 + + K ++ + DV + I +D+ L++ D + Sbjct: 749 SNLATIKDYETKAKNAKKMAAEGNI-AEHVKDVVNVGYPLLVVRIDGLDTGGLRNAWDII 807 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR---- 871 + ++++ ++G K ++ T++ + FNA + + A G Sbjct: 808 RARMETPGACIIGTVNNDKPIIMAAGTDEAVAAGFNAGAVIKNIA---------GNIKGG 858 Query: 872 ----PHMAQSGGPNGNKADQAIAGVASFL 896 P MAQ+GG + + D A+ L Sbjct: 859 GGGKPSMAQAGGKDASGLDAALQAARDML 887 >gi|113953976|ref|YP_731956.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311] gi|122945499|sp|Q0I6G6|SYA_SYNS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113881327|gb|ABI46285.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311] Length = 893 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 336/913 (36%), Positives = 501/913 (54%), Gaps = 55/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL F+++ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ+K T Sbjct: 16 SGAEIRAAFLSFYEERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQKRPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T F +D Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTDLFGIDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFNPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ N Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGLGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ + G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADLAGVDYHQLDDAGQTSLKVIGDHSRAVTQLICDGVSASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + AYP +I+ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGIHQPFLVTMGQASIALLKDAYPSVIERQEVILAELQREESRFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL K ++G AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 370 ETLERGEKLLADVLESKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEHGL-DVDLAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+E+QR RA+A ++ + + I + AT F GYDLL S Sbjct: 427 QAMEQQRQRAKAAAVSIDLTLQDAID-QVAADLNATSFEGYDLLVQS------------- 472 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 SS V+A++ GE A G V+VV D TPFY E GGQ+GD G +GD Sbjct: 473 ---------SSTVQALLVNGEAAASASDGDVVQVVLDNTPFYGEGGGQVGDRGLLVGDGP 523 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + + + G+FVH V+ G L + +D RR+ NH+ATHLL Sbjct: 524 DGNGLIVVIEGVSRNRGVFVHSGRVQLGRLGVGDVVHGQVDRACRRRAQANHTATHLLQA 583 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ + Q GS + + LRFD + + EL+ IE +N I+ + M Sbjct: 584 ALKQVVDEGIGQAGSLVNFERLRFDFHCPRAVKPEELEQIETLINGWISDAQSLEVNEMA 643 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A A+GA A+ G KY D V D S LCGGTHV +T EI L IVSES Sbjct: 644 IDQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVGNTAEIGLFKIVSESG 698 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G ++L ++ +K L K G +V RV + EE + Q Sbjct: 699 VAAGIRRIEAVAGASVLAYLNEREVVVKQLGDRFKAQPGEIVERVVALQEELKNSQKALT 758 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L V + + + + V+ L+ L ++ +++G Sbjct: 759 AARSELAVAKSAALAVQAVAVGKHQLLVARLDGVNGDGLQGAALGLLDQLGDATAVVLGG 818 Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 S + K ++ + ++ A AK+ GGGG GGRP++AQ+GG +G Sbjct: 819 LPDPSDQGKVILVAAFGKAVIATGQQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDGAAL 877 Query: 886 DQAIAGVASFLKK 898 D A+ + LKK Sbjct: 878 DAALNTARAELKK 890 >gi|262038170|ref|ZP_06011567.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264] gi|261747818|gb|EEY35260.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264] Length = 870 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 315/910 (34%), Positives = 514/910 (56%), Gaps = 60/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +F++FF+ H+ S+SLIP +D +L+ T +GMVPFK F G+++ ++ + Sbjct: 1 MTGNELRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK LD Sbjct: 60 TTYQKCIRT----NDLENVGKTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLD 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178 + RL+++V++ D+EA+K+W + G+ A++++R+ +DN+W+ G CGPCSEI++D Sbjct: 116 KERLWVSVFETDDEAYKIWNEEIGVPAERMVRLGEDDNWWAAGPVGSCGPCSEIYYDTQN 175 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G+ +EG+R++EIWNLVF ++ + LP+ +IDTG G+ER+A+V+Q Sbjct: 176 MGKNNEEINCKPGDEGDRFLEIWNLVFTEWNRLEDGTLVPLPEKNIDTGAGIERIASVIQ 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K +N++ DLF +I+ E+V +K + + +VI DH+R+S FLI DG+LP+NEGRG Sbjct: 236 NKKSNFETDLFMPIIKGIEKVLDIK-KEEHDEAVKVIADHIRASVFLIGDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 Y+LR+I+RRA ++ + + L+ + M YP+L++ IE+ ++ Sbjct: 295 YILRKIIRRAFGVGSVAKEKVFEKEDIFLHKLVSYVVETMKDGYPDLVEKSEYIEKVIKI 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEIL--NGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF TL G +L ++ L K + +++FKLYDT G P ++ + IL G Sbjct: 355 EEERFSTTLKNGTEMLSEEIAKLKKQNKKKLSSEISFKLYDTFGFPFELTKLILNNEG-I 413 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + F + LEEQ +R++ + + + EK+G T+F GY+ + Sbjct: 414 EVSEEDFEKRLEEQITRSQRSRVTISDMIKDDFIDEFFEKHGKTEFTGYENFADKGKILY 473 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 K E++FD+TPFYAE+GGQ+ DT Sbjct: 474 AAKSEGMSG------------------------------YEMIFDKTPFYAESGGQVSDT 503 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++ DV KK + +++ I ++ L ID + R+ + NH+ATH Sbjct: 504 GKITAGEFEGRVVDVVKKRDVFIHQVEVIKGIIPAENTTVELEIDVERRKDIQRNHTATH 563 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH L LG+HV Q+GS + D LRFD +H +PI+ ++ IE VN++I N+ Sbjct: 564 ILHKVLREKLGTHVEQSGSLVESDRLRFDFSHYEPISKEMIEEIEYEVNNVILSNIKTKI 623 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 N ++A GA AL KY D VRVV + S LCGG HV STGEI I Sbjct: 624 DYENIQEAKNRGAMALFSDKYGDIVRVVEIPGF-----SIELCGGAHVKSTGEIGFFNIE 678 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ I +G+RRI A TG ++ ++ G +EKL +++ +K + N+V +++ E++ L+ Sbjct: 679 SETGISSGVRRIIATTGHKSLEYVNGIEEKLAEISATMKSDENNIVEVLKKYKNEFKDLE 738 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + +L +++ +I+ V ++ + ELK ++D ++K+QSGII+ Sbjct: 739 KAYMQLQSRLLKYEINEIFEGVEEISGVKVLAKTFENKNIDELKEIVDRGKEKLQSGIII 798 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L +KA + VT+DL+ + A D+ +++A+ G GGGRP AQ+GG NG+ Sbjct: 799 LGS--NNEKAIFVAGVTKDLISKIKAGDIVKVAAQT-ADGNGGGRPDFAQAGGKNGSAVK 855 Query: 887 QAIAGVASFL 896 +A+ ++ Sbjct: 856 EAVEKSKEYI 865 >gi|300858567|ref|YP_003783550.1| alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41] gi|300686021|gb|ADK28943.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41] gi|302206280|gb|ADL10622.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231] gi|302330837|gb|ADL21031.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002] Length = 890 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 315/924 (34%), Positives = 486/924 (52%), Gaps = 63/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F F K GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MQTHEIRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVA 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD RL++TVY +D+EA +W K G+ ++I R+ DN+WSM GPCGPCSE Sbjct: 116 EGGFGLDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+G G G + RY+EIWNLVFMQ E+ N + LPK +IDTG+ Sbjct: 176 IYYDRGAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284 G+ER+A +LQ N Y+ DL + +I +E++TG Y +++ RVI DH R+ Sbjct: 235 GVERVACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMM 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P NEGRGY+LRR++RR + A LLG + + + M +YPE+ + + Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENR 354 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402 I + +E++ F KTL G L + + + ++L+G AFKL+DT+G P+D+ Sbjct: 355 ERILKVALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTL 414 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++ GL +D F+ + EQR+RA+A + G + + T+F GY Sbjct: 415 EMAAEAGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSE 473 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L S V ++ G V E +G +VE++ + +P YA Sbjct: 474 L-----------------------STESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 EAGGQ GD G I + + DVQK + ++VH A V +G L ++ +D Q R Sbjct: 511 EAGGQTGDRGTIIMGDTIVNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHS 570 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 HSATHL+H AL +LG Q GS P LRFD +++ +T+ +L I+ N Sbjct: 571 ARQAHSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQA 630 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + + V T + ++A A GA AL G Y VRVV + GG S LCGGTHV + Sbjct: 631 VDVDWTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHS 686 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 +I + I+ ESS+ +G+RRIEA +G + +L + ++ +A+ +K ++ R+ Sbjct: 687 SQIGPVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIAS 746 Query: 763 IWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDAL 816 + ++ ++ + A+ + Q ++ V+ ++H + V S +++++ L Sbjct: 747 LTQKLKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDL 806 Query: 817 QKKIQS--GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPH 873 + ++ +I L+ K ++ T+ + A DLA++ + G GGG+P Sbjct: 807 KSRLGDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDLAKVLGSYI-QGNGGGKPD 865 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ + D +A + ++ Sbjct: 866 MAQGSARDIAGFDSGVAAIKDEIR 889 >gi|258653460|ref|YP_003202616.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233] gi|258556685|gb|ACV79627.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233] Length = 891 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 322/915 (35%), Positives = 487/915 (53%), Gaps = 61/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F++ GH ++PS+SLI D T++FT +GM PFK F GQ P + Sbjct: 1 MQTHEIRRRFLDHFERAGHTVVPSASLISQ-DATVLFTIAGMAPFKPYFLGQSTPPFPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D+DNVG T RH+TFF+M GNFSFG YFK AI+ AW LLT Sbjct: 60 TSVQKCVRTG----DIDNVGVTTRHNTFFQMAGNFSFGDYFKAGAIEHAWTLLTSSLADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++TVY+ D+EA +LW++I+GL A++I R DNFWSM GPCGPCSEI+ Sbjct: 116 GYGLDPDRLWVTVYESDDEAERLWQEIAGLPAERIQRRGMADNFWSMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERF-------ILPKMSIDTGM 228 +D+G G G + +RY+E+WNLVFMQ + ++ LP+ +IDTG+ Sbjct: 176 YDRGPEY-GIEGGPVADEDRYLEVWNLVFMQDMRGESDGSGKGDFPILGPLPQQNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFL 285 G+ER+A +LQ N Y+ DL + +I + EQ++G KY G + RVI DH RS L Sbjct: 235 GVERLAFLLQGVDNVYETDLLRPIIASMEQLSGKKYGGGDHQADVRFRVIADHSRSGMML 294 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG+ P NEGRGYVLRR++RRA+ ARLLG TEP+M L+ + M +YPEL Sbjct: 295 IGDGVTPGNEGRGYVLRRLLRRAVRSARLLGVTEPVMPTLMSIVRDLMSPSYPELATDYE 354 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403 IE+ +E++ F +T+ G L D + L + L G AF L+DT G P+D+ + Sbjct: 355 RIEKVAATEEKAFLRTIASGSKLFDVAAADLATQHVTTLPGATAFTLHDTQGFPIDLTLE 414 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D+ F + ++EQ+ RARA + G + + GAT+F GY L Sbjct: 415 MAAEAGLT-VDVAGFERLMKEQKDRARADAKARKGGFADLSEYRRLLDQGATEFTGYSEL 473 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + ++ +++ G V A G+++E+V D+TP YAE Sbjct: 474 Q-----------------------TEARIRGLLRDGVPVPAAHEGEEIELVLDRTPLYAE 510 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ D G +G ++ DVQK + VH + G T ++ +D + R Sbjct: 511 SGGQDSDAGTIVGAHGAAEVLDVQKVDRKLVVHRVRITDGEFTTGAQVLAKVDPEWRLGA 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 HS TH++H AL +LG Q+GS P LR D + +++A +E+ N + Sbjct: 571 RQAHSGTHVVHAALRQVLGPEALQSGSYNKPGYLRLDFAWDQALSAATRSELEEVANRAV 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 Q+LPV + ++A A GA AL G Y+D VR+V + GG S LCGGTHV + Sbjct: 631 RQDLPVRVLYGSMQEAQAMGAIALFGETYDDTVRIVEI----GGPWSVELCGGTHVEHSS 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I +ESS+ +G+RR+EA G A L+ + + LAS LKV + GR+E + Sbjct: 687 QIGPVAITAESSVGSGLRRVEAAVGIEAFHRLVAERTLVSQLASTLKVQPAELPGRIETL 746 Query: 764 WEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQ 817 ++ + + A + +A V ++ + +L+++ ++ Sbjct: 747 LDKLKSAEKELAGLRAAALGNVAGTLAGGAIDVAGVALVAATAPEGTAAGDLRTLASDVR 806 Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ G++ L + + V + A +LA+ ++ G GGG+ +A Sbjct: 807 GRLGDRPGVVALFAPAHASVPFAVAVNQGGIARGLAAGELAKAVLPLIE-GRGGGKKDLA 865 Query: 876 QSGGPNGNKADQAIA 890 Q G ++ +AI Sbjct: 866 QGAGTRPDRIPEAID 880 >gi|153938938|ref|YP_001391861.1| alanyl-tRNA synthetase [Clostridium botulinum F str. Langeland] gi|205830033|sp|A7GGF1|SYA_CLOBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152934834|gb|ABS40332.1| alanine--tRNA ligase [Clostridium botulinum F str. Langeland] Length = 879 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 328/908 (36%), Positives = 516/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFK+ I AW+ +T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KDKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + ++L+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ +E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNINTDFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E G + +V TPFYAE GGQ+GDTG Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++M+ Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMD 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + I+SE+ Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIISEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|221195805|ref|ZP_03568858.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626] gi|221184279|gb|EEE16673.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626] Length = 882 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 357/908 (39%), Positives = 519/908 (57%), Gaps = 47/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL FF+ G ++ PSSSL+P DP+L+ N+GM FK + G + Sbjct: 7 MTTAEIRKNFLAFFESKGCKVYPSSSLVPS-DPSLLLANAGMNQFKEYYQGIKTMKEIGA 65 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QKC+R ND+DN+G NRH +FFEMLGNFSFGGY K A A + ++ + Sbjct: 66 TSCQKCLRT----NDIDNIG-DNRHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY TV+ +D+EA ++W + G++ D I R+ DNFW+ TGPCGPCSEI+FDQ Sbjct: 121 LPLDRLYFTVFTDDDEAAEIWHSL-GVAEDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 179 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G P ++G+RY+E WNLVF Q+++Q LP +IDTGMGLER+A ++Q Sbjct: 180 GPEFSGEKP--GDDGDRYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296 +NY+ D+ LI+ E+++G +Y+ N + R++ DH R+ SF+I DGILP NEG Sbjct: 238 AGSNYEGDIMTSLIELGEKLSGKRYQAGNEEVDRSLRILADHSRAVSFMIGDGILPGNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 R Y+LRR++R A+ + RL+G + M + +G AY EL++ ++LIE L +E+E Sbjct: 298 RSYILRRLLRHAVYHGRLVGIQKTFMAEYANEVVRLLGDAYSELVEKRVLIEGILTAEEE 357 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG TL+ G L+ L L DE L+GDVAF L+DT+G P+D+ ++I G A ++ Sbjct: 358 RFGTTLEAGESKLEDELKKLTGDECLSGDVAFLLHDTYGFPIDLTREIAARAGHA-VNEA 416 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A+ EQ+ RARA + G + +W +L ++ T F GY+ Sbjct: 417 QFDAAMAEQKQRARASANRDAWGKAQSVWVALSDRLDETVFDGYNHNELEGC-------- 468 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V A+V+ G+ V+ A G +VEVV D+TPFYAE GGQ+GDTG Sbjct: 469 --------------RVVALVKGGQEVDCAAVGDEVEVVLDRTPFYAEMGGQVGDTGTLSA 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 D + +Q++D + K + H VE G L T L+ ID R + NH+ATHLL A Sbjct: 515 DNLFVQVSDTKHKEGNLIAHVGQVEEGELHTGDVLIAVIDTGRRELIRRNHTATHLLDAA 574 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILGSHV+Q GS + PD LRFD TH + +TS EL IE +N I P+VT+IMN Sbjct: 575 LKLILGSHVNQAGSLVAPDRLRFDFTHFEALTSDELARIEGMINAEIFAAKPIVTQIMNI 634 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A+GA AL G KY D VRVVSV ED S LCGGTH +T E+ L IVSESS+ Sbjct: 635 DEAKAAGAVALFGEKYGDVVRVVSVGEED-HPFSRELCGGTHAKNTAELGLFKIVSESSV 693 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 A RRIEA+T A S++ + +L +A LKV V RVE++ + R+ Sbjct: 694 GANSRRIEAVTSMGAISYVDERLVQLDMVAHGLKVRPEAVAARVEQLQSDLREAHKKAEA 753 Query: 777 R-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII--MLVG 829 ++ + H++ + + ++ K+L+SV D ++ + ++ Sbjct: 754 ATVGAGSNRIAEALHNAHELDGYRCVITRLDDLSGKDLRSVWDGIRDASDGHPVACVIAS 813 Query: 830 ISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ +KK ++L T+ + F+A L + A ++GG G GGRP+MAQ+GG + + D A Sbjct: 814 VTPDKKVALLAGATDTAVAAGFSAGTLIKDIAGLVGGRG-GGRPNMAQAGGVDISGIDVA 872 Query: 889 IAGVASFL 896 + L Sbjct: 873 LEAAKQKL 880 >gi|325280523|ref|YP_004253065.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712] gi|324312332|gb|ADY32885.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712] Length = 877 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 482/920 (52%), Gaps = 75/920 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G P ++ V Sbjct: 1 MKSAEIRQKFLDFFESKGHTIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNINPKHRRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ LT LD Sbjct: 61 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEDAIAFAWEFLTGVMGLD 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY TV++ D EA K+W LS D+I+ DNFW M + GPCGPCS Sbjct: 121 KNRLYATVFEGSKEDGLEGDAEARKIWMNY--LSEDRILFGNKKDNFWEMGDMGPCGPCS 178 Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ IEIWNLVFMQ+ ++ LP +DTGMG Sbjct: 179 EIHIDLRPEEERKLKSGRELVNQDNPLVIEIWNLVFMQYNRKADGSLENLPNHHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIA 287 ER+ +Q KT+NYD D+F +I +++G+KY ++ RVI DHLR+ SF I Sbjct: 239 FERLCMAVQGKTSNYDTDVFTPIIDEISRLSGLKYGVSHDADVAMRVIADHLRTISFSIT 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L E M L+P L MG YPEL+ + L Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYAYTYLDQKEAFMYRLVPVLIEVMGKHYPELVAQQEL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R E+ F +TLD+G+ LLD ++ ++ + G+VAF+LYDT+G PLD+ + I Sbjct: 359 IEKVIREEENAFLRTLDKGIKLLDRIIEKTKAEDFLTIPGNVAFELYDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +GL ++ F +E Q+ R+R+ S W L + +F+GYD Sbjct: 419 LREKGL-VVNRREFKAEMEAQKERSRSA-----SSVDTDDWIELIDDDVQ-EFVGYDYTE 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RKV+ + +VF+ TPFY E Sbjct: 472 VEVKITRYRKVVTKNKTF----------------------------YHLVFNITPFYGEG 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD+G IG+ ++I D +K+ + + + +D R + Sbjct: 504 GGQVGDSGVLIGEKETIRIIDTKKENGLTIHLAEKM---PEDVTQTFIAKVDEHKRVLTA 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLL +AL +LG HV Q GS ++ + LRFD +H + +T EL + VN +I Sbjct: 561 NNHSATHLLDYALRKVLGKHVEQKGSYVSDEHLRFDFSHFQKVTDEELAEVAAIVNRLIR 620 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N+P+ R + A A GA A+ G KY D VRV+ S LCGGTHV +TG Sbjct: 621 MNIPLEEHRSVPMAKAQAMGALAIFGEKYGDLVRVIKYGE------SVELCGGTHVPATG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I I+SESS+ AG+RRIEAIT +A ++ ++ + K + N++ V+ + Sbjct: 675 QIGFFKILSESSVSAGVRRIEAITADKAEEYINNSFAIIREMEKMFKSN-KNLMECVKNV 733 Query: 764 WEEYRKLQLIHAKRKLQ---LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQK 818 EE L+ K + L E L K D+N + +S + + + K + L+ Sbjct: 734 LEENEGLKKETEKFAKESLRLLKERLKNEKKVYRDINLIITNLS-IPAAQAKDIAFQLKG 792 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + +I + G K + ++++ + + NA + R +A+ + GG GGG+P A Sbjct: 793 EYEK-VIFIAGGVNAGKPHLTVMISNSIAEDYGLNAGQIVREAAQEIKGG-GGGQPFFAT 850 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG ++AI + Sbjct: 851 AGGAYPEGIEKAIEKAEKLV 870 >gi|315224360|ref|ZP_07866194.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287] gi|314945750|gb|EFS97765.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287] Length = 877 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 329/924 (35%), Positives = 489/924 (52%), Gaps = 76/924 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP Y+ V Sbjct: 1 MTSQEIREQFLKFFKSKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA+ +WK+ ++ + I+ DNFW M + GPCGPC+ Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAYDIWKER--IAENHILLGNKKDNFWEMGDQGPCGPCT 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + IEIWN VFM+F ++ LP ++DTGMG Sbjct: 179 EIHVDIRSDEEKAKVPGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ VLQ+K +NYD D+F LI E++T +Y + + RVI DH+R Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTPEQEQVNIAIRVISDHIR 298 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + +F I DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG +PE Sbjct: 299 AVAFAITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPE 358 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + LI ++ E+ F +TL++GL++LD ++ + + L+G AF+LYDT+G P D Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQNSPGKQ-LSGGKAFELYDTYGFPKD 417 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + IL +GL +D SF + L++Q+ R+RA + W L++ +FIG Sbjct: 418 LTALILSEKGLT-MDEASFEEQLQKQKERSRAA-----AQIKADDWVILRDDDEE-EFIG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L + + R+ VE G ++VF+ TP Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FY E GGQ+GD G L KK + +H + E + + Sbjct: 504 FYPEGGGQVGDKGTLQSANGELIYILDTKKENNLIIHIS--EHLPTNLNDPFKAEVHSIS 561 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +T ELK +E V Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLV 621 Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + +P+ R + + A+ SGA AL G KY DRVR++ S LCGGTH Sbjct: 622 NRRIFEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRMIQFGD------SKELCGGTH 675 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +TG+I I+SE ++ AGIRRIEAIT A + Q++ ++ + LK + + V Sbjct: 676 VKNTGDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLK-NAQDPVK 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSK--ELKSVMD 814 + + EE L + + + + + K +VN + ++ +VD++ LK + Sbjct: 735 AIRHLQEENAALHKELEQLRKEQAKQLKTSIKAEFTEVNGVQCLVKQVDAEVATLKDLAF 794 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRP 872 L ++++ I +E KA +L + +DL +A + R K + GGG GG+P Sbjct: 795 ELGNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYIHGGG-GGQP 853 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 A +GG N +A++ V +L Sbjct: 854 FFATAGGKNPGGITEALSKVKDYL 877 >gi|187778850|ref|ZP_02995323.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC 15579] gi|187772475|gb|EDU36277.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC 15579] Length = 879 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 338/908 (37%), Positives = 519/908 (57%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHFRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPSKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y+ED+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KEKLYVTIYEEDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDSIFEVDTIKAVLDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + K I++ ++ E+ER Sbjct: 299 GYVLRRVLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKKEYIKKVIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + ++L+GD AFKLYDT+G P+++ ++IL +G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEQG-INIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ E + + TQF GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLSINTQFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + S V IV+ E + G K +V TPFYAE GGQ+GDTG Sbjct: 467 ------------LKSKVALIVENEEFKNQIEKGNKGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H V G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDSFKAKVIDCKKNISGKILHFVRVLEGKMSLEDEVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ AELK +E VN I + V T++MN Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEAELKEVEKIVNKEIMKANVVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHV ++GEI + IVSE+ Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GEFSKELCGGTHVGNSGEIGMFKIVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEAIT +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAITAFKAIEYVDHKNNILKDAAQILKCNEKELLNKLSHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK ++AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEIAAIAGGGG-GGRPDMAQAGGKDPNKLEEAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|308276522|gb|ADO26421.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19] Length = 905 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 315/922 (34%), Positives = 486/922 (52%), Gaps = 63/922 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61 IR F F K GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 18 THEIRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 77 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVAEG 132 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++TVY +D+EA +W K G+ ++I R+ DN+WSM GPCGPCSEI+ Sbjct: 133 GFGLDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSEIY 192 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + RY+EIWNLVFMQ E+ N + LPK +IDTG+G+ Sbjct: 193 YDRGAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGLGV 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLI 286 ER+A +LQ N Y+ DL + +I +E++TG Y +++ RVI DH R+ LI Sbjct: 252 ERVACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMMLI 311 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + A LLG + + + M +YPE+ + + Sbjct: 312 LDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENRER 371 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I + +E++ F KTL G L + + + ++L+G AFKL+DT+G P+D+ ++ Sbjct: 372 ILKVALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTLEM 431 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D F+ + EQR+RA+A + G + + T+F GY L Sbjct: 432 AAEAGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSEL- 489 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V ++ G V E +G +VE++ + +P YAEA Sbjct: 490 ----------------------STESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYAEA 527 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ GD G I + + DVQK + ++VH A V +G L ++ +D Q R Sbjct: 528 GGQTGDRGTIIMGDTIVNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHSAR 587 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL+H AL +LG Q GS P LRFD +++ +T+ +L I+ N + Sbjct: 588 QAHSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQAVD 647 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + ++A A GA AL G Y VRVV + GG S LCGGTHV + + Sbjct: 648 VDWTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHSSQ 703 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I+ ESS+ +G+RRIEA +G + +L + ++ +A+ +K ++ R+ + Sbjct: 704 IGPVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIASLT 763 Query: 765 EEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 ++ ++ + A+ + Q ++ V+ ++H + V S +++++ L+ Sbjct: 764 QKLKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDLKS 823 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ +I L+ K ++ T+ + A DLA++ + G GGG+P MA Sbjct: 824 RLGDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDLAKVLGSYI-QGNGGGKPDMA 882 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 Q + D +A + ++ Sbjct: 883 QGSARDIAGFDSGVAAIKDEIR 904 >gi|284037267|ref|YP_003387197.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74] gi|283816560|gb|ADB38398.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74] Length = 890 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 324/933 (34%), Positives = 465/933 (49%), Gaps = 82/933 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FFQ H ++ S+ L+ NDPTLMF NSGM FK+ F G P + V Sbjct: 1 MTSHEIRRHFLDFFQSKQHLIVASAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 61 ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYKLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY++V+ D+EAF LWK I G D+II DNFW M +TGPCGPCS Sbjct: 121 KDRLYVSVFQGDAKDNVPFDQEAFDLWKPIVG--EDRIIYGNKKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + +EIWNLVFMQF ++ LP +DTGMG Sbjct: 179 EIHVDLRTPEEIAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEALPARHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLI 286 ER+ +Q K +NYD D+F I+ E+++G+ Y V RVI DH+R+ SF I Sbjct: 239 FERLCMAIQNKRSNYDTDVFTGTIKVIEEISGISYTAGTGMTDVAMRVISDHIRAVSFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG++P+N GYV+RRI+RRA+ Y L EP M L+P L + +PEL + Sbjct: 299 ADGLVPSNAKAGYVIRRILRRAIRYGYSYLNLAEPFMTKLVPTLAMQFADVFPELTAQRD 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403 + +R E+ F +TL GL LD ++ L D + G+ F+L DT G P D+ Sbjct: 359 FVATVIREEEISFLRTLGTGLGRLDQIIGQLTTDGKTEIPGETVFELNDTFGFPADLTAL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I + L ID F +AL+EQ++R+R + ++ W + E +F+GYD Sbjct: 419 IAREKRLT-IDEAGFQKALQEQKARSRKD-----ASSSAGDWIDVNE-TDRVEFVGYDQP 471 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + RK+ G +V+VV D+TPFYAE Sbjct: 472 EAYAQIVKYRKIQN----------------------------KQGTQVQVVLDKTPFYAE 503 Query: 524 AGGQLGDTGCAIGDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +GGQ+GDTG + T + V +L S+ I+ Sbjct: 504 SGGQIGDTGTLELFSGSDQIGTLTVLDTKKENDLTIHIVQDVTGIDDLLTEADSVYAVIN 563 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R S NHSATHLLH AL +LG+HV Q GS + PD LRFD +H +T +L +E Sbjct: 564 TTRRGLTSSNHSATHLLHAALRDVLGTHVGQKGSYVGPDALRFDFSHFSKVTDEQLAEVE 623 Query: 637 DNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 VN+ I +++ R + A GA AL G KY D VRV++ + +S LCG Sbjct: 624 RIVNEKIREDIKLDEKRNVPIGQAKELGATALFGEKYGDFVRVITFDPN----YSVELCG 679 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV +TG I L E S+ GIRR+EA T A + + Q + L LK + Sbjct: 680 GTHVPATGHIGLFKFTGEGSVSTGIRRVEAKTSAGAEALVNEQMAVVSELKELLKA-PKD 738 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIA-----DVNFMSHIISEVD 805 VV V+ + +E LQ + + + + + + + + Sbjct: 739 VVKAVQSLLDERAALQKQVEALQNEKVQQLKNQLLDKIETVNHNGGPGYSRLVERVEVPN 798 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL 863 + LK + L+ K+ + ++L G K + +++ + L+ + NA + + AK + Sbjct: 799 ADALKQLAYDLKAKVDNLAVVL-GADINGKPQLAVMLPDSLIQDKKLNAGQVVKELAKNI 857 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG GGG+P A +GG + + D A+A L Sbjct: 858 KGG-GGGQPFFATAGGTDLSGLDAALAQGKELL 889 >gi|292670903|ref|ZP_06604329.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541] gi|292647524|gb|EFF65496.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541] Length = 872 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 321/912 (35%), Positives = 518/912 (56%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R +L+FF +K H L S SL+P NDPTL+ +GM P K FTG+ KP + Sbjct: 1 MTGNELREAYLQFFAEKKDHLRLSSYSLVPENDPTLLLIGAGMAPLKPFFTGKMKPPHNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + T Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L Sbjct: 61 IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVVEL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++++Y ED+EA +W + + + D I+ + DNFW + GPCGP SEI+ D G Sbjct: 117 PKDKLWVSIYPEDDEARAIWLEQTDVLPDHIVAL--EDNFWEIGP-GPCGPDSEIYIDLG 173 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + +R++EIWNLVF Q+++ E IL +IDTG GLER+A+V+Q Sbjct: 174 EECGCGEPTCGIGCDCDRFLEIWNLVFTQYDRTEDGEYNILAHKNIDTGCGLERLASVVQ 233 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N++ DL +I+ +++ + Y + ++ +VI DH RS + +I DGILP+NEG Sbjct: 234 NKKTNFETDLLYPIIEYISKISDVSYGKDPQKDISLKVIADHARSVAIMIMDGILPSNEG 293 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354 RGYVLRR +RRA+ + R+LG T+P + + A+ A + ELI + I+ + E Sbjct: 294 RGYVLRRTLRRAIRHGRMLGITKPFLDGAVSAVVEIFRDAKDFSELIAKQDYIKRVIHVE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++RF TL +G+ LL+ ++ L + +LNG++ FKLYDT+G P ++ ++IL G+ Sbjct: 354 EDRFASTLAQGIELLNEEVTRLKSENETVLNGEIGFKLYDTYGFPRELTEEILHENGVT- 412 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D FN +E+QR+RAR+ D Sbjct: 413 LDDEGFNCEMEKQRTRARSARA-----------------------------ENQAVSVPD 443 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + ++ + + V AI +G++V+ G+ ++ TPF+AE GGQ+GD G Sbjct: 444 LSNVDTGSLMEDADATKATVVAIWHEGKLVDSLRDGETAGIILSTTPFHAEGGGQVGDEG 503 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + L +++ ++ +G H A VE G ++ S+ + +D + + + NH+ATHL Sbjct: 504 SLRSELGYLTVSNTKRLPDGTVYHLAYVEEGQIQQGDSVEICLDTKKKLSSARNHTATHL 563 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ++G HV Q GS +TP+ LRFD T+ +P++ +L+ IE+ VN+ I ++ + Sbjct: 564 LHAALRRVVGDHVQQAGSLVTPERLRFDFTNFEPVSEQQLRDIEELVNEEILCSIDLHIS 623 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A A GA AL G KY D VRVV V S LCGG+HV++TG+I L IVS Sbjct: 624 MMPIDEAKALGAMALFGEKYGDVVRVVRVP-----DFSIELCGGSHVTNTGQIGLFKIVS 678 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEAITG+ A ++ ++ L+ LK ++V ++++ E + +Q Sbjct: 679 ESGVAAGVRRIEAITGRAACAYAAEMARTVQELSQKLKTRSEDLVAQIDKFMTERKSMQE 738 Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ + + + + L ++ + + + EL+++ D +K+ SGI++L Sbjct: 739 QLRSFAEFRDKADAQKLLMGVQEVGEFRVVVGKANVDSMDELRNIADLTCEKLDSGIVVL 798 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S+++ + + +A ++ + +AK +GGGG GGRP MAQ+GG N + Sbjct: 799 GAV-IDDKVSLVVKADKAAVKLGAHAGNIIKAAAKAVGGGG-GGRPDMAQAGGKNPEQLS 856 Query: 887 QAIAGVASFLKK 898 QA + +++ Sbjct: 857 QAFDEAVAVIRQ 868 >gi|256818974|ref|YP_003140253.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271] gi|256580557|gb|ACU91692.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271] Length = 877 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 329/924 (35%), Positives = 489/924 (52%), Gaps = 76/924 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP Y+ V Sbjct: 1 MTSQEIREQFLKFFESKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA+ +WK+ ++ + I+ DNFW M + GPCGPC+ Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAYDIWKER--IAENHILLGNKKDNFWEMGDQGPCGPCT 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + IEIWN VFM+F ++ LP ++DTGMG Sbjct: 179 EIHVDIRSDEEKAKVPGRDLVNNDYPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ VLQ+K +NYD D+F LI E++T +Y + + RVI DH+R Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTAEQEQVNIAIRVISDHIR 298 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + +F I DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG +PE Sbjct: 299 AVAFAITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPE 358 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + LI ++ E+ F +TL++GL++LD ++ + + L+G AF+LYDT+G P D Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQNSPGKQ-LSGGKAFELYDTYGFPKD 417 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + IL +GL +D SF + L++Q+ R+RA + W L++ +FIG Sbjct: 418 LTALILSEKGLT-MDEASFEEQLQKQKERSRAA-----AQIKADDWVILRDDDEE-EFIG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L + + R+ VE G ++VF+ TP Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FY E GGQ+GD G L KK + +H + E + + Sbjct: 504 FYPEGGGQVGDKGTLQSANGELIYILDTKKENNLIIHIS--EHLPTNLNDPFKAEVHSIS 561 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +T ELK +E V Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLV 621 Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + +P+ R + + A+ SGA AL G KY DRVR++ S LCGGTH Sbjct: 622 NRRIFEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRMIQFGD------SKELCGGTH 675 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +TG+I I+SE ++ AGIRRIEAIT A + Q++ ++ + LK + + V Sbjct: 676 VKNTGDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLK-NAQDPVK 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSK--ELKSVMD 814 + + EE L + + + + + K +VN + ++ +VD++ LK + Sbjct: 735 AIRHLQEENAALHKELEQLRKEQAKQLKTSIKAEFTEVNGVQCLVKQVDAEVATLKDLAF 794 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRP 872 L ++++ I +E KA +L + +DL +A + R K + GGG GG+P Sbjct: 795 ELGNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYIHGGG-GGQP 853 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 A +GG N +A++ V +L Sbjct: 854 FFATAGGKNPGGITEALSKVKDYL 877 >gi|315174460|gb|EFU18477.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1346] Length = 880 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R +L+FF+ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKELTSSQVRQMYLDFFKSKGHSVEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +L++TVY +D EA ++W+ GLS D I I DNFW + GP GP +EIF Sbjct: 117 WLAFDPEKLHVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I D Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F +E QR RAR+ S + L + ++F+GY L Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+Q +V EA +G E++F +TPFYAE GG Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + V KKA H + L L +D + R ++ Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R LQ + + +L + I V +++ ++ D +L+ + D ++K Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L ++++K S+L +T+D+ A DL + A +GGGG GGRP MAQ+G Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N A+A V ++L Sbjct: 860 GKNPAGIADALAEVENWL 877 >gi|170755913|ref|YP_001782179.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] gi|205830032|sp|B1IJG7|SYA_CLOBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169121125|gb|ACA44961.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] Length = 879 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 330/908 (36%), Positives = 516/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFK+ I AW+ +T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KDKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + ++L+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ +E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNINTDFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E G + +V TPFYAE GGQ+GDTG Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++MN Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + IVSE+ Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GNFSKELCGGTHVSNSGQIGMFKIVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED + +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|309810794|ref|ZP_07704600.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185] gi|308435274|gb|EFP59100.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185] Length = 904 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 335/930 (36%), Positives = 504/930 (54%), Gaps = 73/930 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L+FF+ GH ++PS+ LI +DP L+F N+GMVPFK F GQ P + Sbjct: 1 METAEIRRRWLQFFEGKGHTVVPSAPLI-YDDPNLLFVNAGMVPFKPYFLGQATPTFTRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D++ VG+T+RH TFF+M GNFSFG YFKE AI+ AW+LLT+ Sbjct: 60 TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKEDAIKFAWELLTRHQSQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ TV++ D+EA+ +WK + G+ A +I R NDN+WSM GP GPCSEIF Sbjct: 116 GYGLDADRLWPTVFESDDEAYAIWKDVIGVDAARITRRDANDNYWSMGVPGPGGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 FD+G G G + + +RY+EIWNLVFMQ+E + + LP+ +IDTGMGL Sbjct: 176 FDRGAEY-GVEGGPAVDEDRYMEIWNLVFMQYELSAVRSKADFDVAGELPRRNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA+VLQ N Y+ID ++ + ++TG +Y + V+ RV+ DH+R Sbjct: 235 ERMASVLQGVDNLYEIDEVYPVLDMAAEMTGKRYGANSGQSAASSHPDDVHLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SS LI DG+ P NEGRGYVLRR++RRA+ RLLGY +P + HL+P M +YPEL Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRAMRLLGYADPALPHLVPISMERMSQSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK---------DEILNGDVAFKLY 391 I + +E+E F +TL G +LD ++ + +L GD AF L+ Sbjct: 355 KTDFARISQIAYAEEEAFRRTLVAGTTILDTAVAKAKQTTDQQAGGDKPVLTGDQAFSLH 414 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G P+D+ ++ +G +D F + ++EQR RA+A + +G + ++ + Sbjct: 415 DTYGFPIDLTLEMAAEQG-VSVDEAGFCRLMDEQRQRAKADAKAKKAGHGDVAVWTQLRE 473 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 GAT+F+ Y+ L+ + V+ +V G VE+ GQ Sbjct: 474 AGATEFLAYETLQ-----------------------AEASVRGLVANGSAVEQLEPGQSG 510 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 +VV D+T FYAE+GGQ+ D G + RL++ DVQ+ +G+ H V G +R + Sbjct: 511 QVVLDRTSFYAESGGQIADEGIIVTPAGRLKVVDVQRPVKGLIAHTVEVLDGPVRVGEGV 570 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 +D + R HS TH++H AL +LG Q+GS P LR D + ++ Sbjct: 571 HTQVDPEWRISACQAHSGTHVVHAALREVLGPSALQSGSYNKPGYLRLDFAWNSALSPET 630 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691 IE+ N + ++LPV + M +A GA AL G Y+++VRV+ + GG S Sbjct: 631 RSEIEEVSNLALRRDLPVAAQYMTLPEAKEWGAIALFGETYDEQVRVIEI----GGPWSR 686 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 LCGGTHV+ + +I L + ESS+ +G+RR+EA G A +L + + L S K Sbjct: 687 ELCGGTHVAHSSQIGALTLTGESSVGSGVRRLEAFVGIDAMRYLAKERALVADLTSMTKA 746 Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806 G + ++ E+ + + ++ K Q + V F+ H +D+ Sbjct: 747 QPGELKDKISEMLTRIKDAERELSRLKQQQMAAAAGSLVEQAKDVFGVRFIGHHDDAIDA 806 Query: 807 KELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 +++ L+ K+ ++ + G+SK + V+ R A DL +++A VL Sbjct: 807 DAARAMATDLRAKLGDATPSVVAVGGVSKGRPVIVIATNAPAREWRVKAGDLVKVAAGVL 866 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 GGGG GG+P +AQ GG + +K AIA V Sbjct: 867 GGGG-GGKPDLAQGGGQDASKLGAAIAEVE 895 >gi|325963401|ref|YP_004241307.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] gi|323469488|gb|ADX73173.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] Length = 892 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 323/924 (34%), Positives = 493/924 (53%), Gaps = 64/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+ Y Sbjct: 1 MKSQEITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 VSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTGVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++TVY+ED+EA LW K +G+ A++I ++ +DN+W + GP GPCSEI+ Sbjct: 116 GYGLDPERLWVTVYEEDDEAKDLWLKNTGVPAERIQKMGKSDNYWHTGQPGPAGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + RYIEIWNLVFMQ++ +++ LPK +IDTG+G+ Sbjct: 176 YDRGPAY-GVEGGPLADETRYIEIWNLVFMQYQIENVRSKEDFDVVGELPKRNIDTGLGM 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS Sbjct: 235 ERLAMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETDEDPHHTDDVRMRVVADHIRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI+DG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 295 ALMLISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPELLPASRDAMKGVYPVVD 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDI 400 I +E++ F +T+ G L+ + ++ L+G+ AF L+DT+G P+D+ Sbjct: 355 TDFARISRIAYAEEKAFLRTIASGTARLEDAVRESKAANKPLSGEDAFTLHDTYGFPIDL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D +F ++EQR RA+A + G G + F G T F GY Sbjct: 415 TLEMAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQELLGQGETVFTGY 473 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 L G S V+ I+ G V++A +G ++E+V +TPF Sbjct: 474 SELDG-----------------------ESRVRGILTGGRPVQQASTGDEIELVLAETPF 510 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAEAGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + + + +D + R Sbjct: 511 YAEAGGQAADTGLITGDGFVVEVLDVQRPLKGLSVHKAIVREGEIGADSLVRAAVDRERR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N Sbjct: 571 HAAEQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N V T++M +A A GA AL G Y + VRVV + G S LCGGTHVS Sbjct: 631 LAIRNNYAVDTKVMPLAEAKALGAMALFGENYGNEVRVVEI----DGAWSRELCGGTHVS 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 687 NTSLIGSLSLLGEQSVGSGNRRVEAFVGMDAFRHLAAERALVTELTEMLKVPSGQLADRI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD-SKELKSVMD 814 + + + + + + + V+ ++H +V + +++ + Sbjct: 747 ATTLAKLKATEKELDRLRKEQLAASAAQLVSTATDAGGVSVIAHDAGQVSGADDIRGLAL 806 Query: 815 ALQKKIQSGI--IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 L+ ++ SG + + G+S ++ ++ A L RL+A +LGGGG GG+ Sbjct: 807 DLRNRLGSGAATVAVAGVSNDRPVILVATNEAAREAGVKAGALVRLAAGILGGGG-GGKD 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 +AQ GG + K QA+A V + Sbjct: 866 DVAQGGGTDAGKVPQALAAVVDAI 889 >gi|298243740|ref|ZP_06967547.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] gi|297556794|gb|EFH90658.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] Length = 880 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 342/909 (37%), Positives = 508/909 (55%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL++F GH +PSSSL+P NDPT+M T +GM F G+E P +T Sbjct: 8 TSTEIRARFLDYFASKGHVKVPSSSLVPRNDPTVMLTTAGMQQMIPYFLGRETPPGSRLT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC R D+D VG R TFFEMLGNFS G YFK AI AW+ LT+ L Sbjct: 68 SSQKCFRT----TDIDIVGN-ERTLTFFEMLGNFSVGDYFKREAITFAWEFLTQVIKLPA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGE 181 +RL+ TV+ ED+EA + W +I+G + I+R+ DN+W +GPCGP SEI++D+G Sbjct: 123 QRLHPTVHPEDDEAPRYWNEIAGYPDEAIVRL--EDNWWGPPGASGPCGPDSEIYYDRGV 180 Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + ER++EIWNLVFMQF Q R LPK +IDTGMGLER++ V+Q Sbjct: 181 EHGCGRADCKPGCDCERFLEIWNLVFMQFFQDRDGGRTPLPKTNIDTGMGLERLSMVVQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 K + +D D+F+ +I Q+TG Y + RVI DH R+ FL ADG+LP+NEGR Sbjct: 241 KESVFDTDIFRAIIDHFAQLTGKTYGQETRVDTSLRVIADHARALVFLAADGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GY+ RR++RRA+ + +LLG +P + + MG Y EL + I + L E+++ Sbjct: 301 GYIFRRVLRRAVRHGKLLGLDQPFLSIAADTVIKLMGDYYTELRTQRDRIVDVLSLEEKK 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL+ GL LL +LS L + EI + G FKLYD+HG P+++ Q+I +G ID Sbjct: 361 FSQTLNTGLQLLTSLLSDLRQKEISVIPGTEVFKLYDSHGFPVELTQEIASEQGFT-IDA 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F QA+++Q+ R+RA S + E + ++ G T+F GY + G Sbjct: 420 AGFEQAMQQQQERSRAASNFAQADH-ETNLDEVLQRIGPTKFTGYQGIAG---------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A+ G VE + Q+ + D TPFYAE+GGQ+GD G + Sbjct: 469 -------------TGKVVALFVDGREVESISAPQQALAILDATPFYAESGGQIGDRGDLL 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ D ++ +G++VH+ + G LR S+ + Q R NHSATHLLH Sbjct: 516 AQAGVFKVQDTRRPVKGLYVHYGEIAEGYLRVGDSVQAEVISQRREDTMRNHSATHLLHK 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+ V Q GS + P+ LRFD + + +T+ EL I+ VN I + PV T IM Sbjct: 576 ALRDLLGTQVEQRGSLVEPERLRFDFSSQRGLTTDELAQIDAQVNRWIRADYPVDTTIMP 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A+A+GA AL G KY+D VRVVS+ S+ LCGGTH +STG+I L V E+S Sbjct: 636 IQEALATGAMALFGEKYDDLVRVVSMGS------STELCGGTHCASTGQIGLYLTVQETS 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+TG+ A ++L + + SLA+ L+V + RVE++ E L+ A Sbjct: 690 VAAGIRRIEALTGRAAEAYLRRRSALVDSLAARLQVQTDTLEARVEQMQHELSTLRKQVA 749 Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + V L +++ V ++ + D K L+ + + ++ K++ ++++ Sbjct: 750 QFMRENAVRQVETLVLQGQELSGVTIIATSVDVPDDKVLREMGEMMRSKLKQPHVVVLAA 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E++ ++ + V L R +A +A + LGG G GGRP +AQ GG N + A+ Sbjct: 810 PLEERIALQVNVEPSLTKRGLHAGKIAAAVGQKLGGKG-GGRPDVAQGGGKNKAELGAAL 868 Query: 890 AGVASFLKK 898 V F+++ Sbjct: 869 DLVTQFVRE 877 >gi|262202250|ref|YP_003273458.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247] gi|262085597|gb|ACY21565.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247] Length = 900 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 331/933 (35%), Positives = 478/933 (51%), Gaps = 73/933 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+SL+ +DP L+F N+GMVPFK F G++ P + Sbjct: 1 MQTHDIRKRFLDHFIKAGHTEVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEQTPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D+D VG T RH+TFF+M GNFSFG YFK AI AW LLT Sbjct: 60 TSVQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWTLLTGSVENG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + + +L+ TVY +D+EA +W+ G+ A +I R DN+WSM GPCGPCSEIF Sbjct: 116 GYGISPDKLWPTVYLDDDEAEAIWRDEIGVPAQRIQRRGMKDNYWSMGVPGPCGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ E+ + LPK +IDTGMG+ Sbjct: 176 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGAGGAKDDYEILGPLPKKNIDTGMGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279 ER+A +LQ N Y+ DL K +I + +VTG Y + V RVI DH Sbjct: 235 ERVACLLQGVDNVYETDLLKPIIDLAAEVTGRAYGAGNHDDRGSAAHEDDVKFRVIADHT 294 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 R+S+ LI DG+LP N+GRGYVLRR++RR + ARLLG EP M + M +YPE Sbjct: 295 RTSAMLIGDGVLPGNDGRGYVLRRLLRRVVRSARLLGAEEPTMGAFIGRAIDLMSPSYPE 354 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLL--DGVLSHLGKDEILNGDVAFKLYDTHGLP 397 L + + I E+ F KTL G L + ++G AF L+DT+G P Sbjct: 355 LAEQRDHIVSVAVGEETSFSKTLAAGSKLFADAAAATKAAHRSTISGSDAFTLHDTYGFP 414 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ GL +D F + EQ+ RA+A + +G + + G T+F Sbjct: 415 IDLTLEMAAEAGLE-VDQAGFTGLMAEQKQRAKADATARKTGHADVAVYREFLDRGPTEF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 G+D L + V +V G V A G ++ V+ D+ Sbjct: 474 TGFDELVS-----------------------EAKVLGLVADGARVPAATPGTELTVILDR 510 Query: 518 TPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TP YAE+GGQ+ D G G G+RL++TDVQK + +++H +V+ G + ++ +D Sbjct: 511 TPLYAESGGQIADVGTITTGSGVRLRVTDVQKLGKSVWLHKVVVDEGEIAEGDEVLAAVD 570 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + HS TH++H AL +LG +Q GS P LRFD P+T ++ + IE Sbjct: 571 AGWRHGATQGHSGTHMVHAALREVLGPGATQAGSLNRPGYLRFDFHQGSPLTDSQKRQIE 630 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N + N PV T +A + GA AL G Y D VRVV + GG S LCGG Sbjct: 631 EISNSAVEANYPVHTFETGLAEAKSMGALALFGENYGDVVRVVEI----GGPFSMELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+++ +I + ++ ESS+ +G+RR+EA G + L + L LAS LKV V Sbjct: 687 THVAASSQIGPVTLIGESSVGSGVRRVEAYVGMDSFRFLSKERALLAGLASSLKVPSEEV 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELK 810 GRVE++ R + K + + + + + +D+ L+ Sbjct: 747 PGRVEQLVTRLRDAEKQLEKVRADAARSAAAGLVETAEPVGSTLLVGGRLPDGLDANGLR 806 Query: 811 SVMDALQKKIQS--GIIMLVGISKEK----KASVLIVVTEDLLD-RFNAVDLARLSAKVL 863 ++ L+ ++ +I+L ++ K + T D A DL R +A +L Sbjct: 807 TIATDLRGRVADRAAVIVLFSVTDAGDGTTKVPFAVATTAAARDAGIKAGDLVRETAPLL 866 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG GGG+P +AQ G + + AIA V + Sbjct: 867 -GGRGGGKPDLAQGSGTDATGIETAIARVRELI 898 >gi|323140610|ref|ZP_08075534.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067] gi|322414874|gb|EFY05669.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067] Length = 873 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 328/909 (36%), Positives = 491/909 (54%), Gaps = 58/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FFQ GH +LPS+SLIP +DPTL+ +GM PFK FTG+ KP + Sbjct: 4 MTGNEIREKFLKFFQDRGHLMLPSASLIPQDDPTLLIIGAGMAPFKPFFTGKMKPPATRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVGRT RHHT+FEMLGNFSFG YFK+ I +W+ LTKE L Sbjct: 64 TTCQKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWSWEFLTKELGLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +LYIT++ ED+EAF +W + G+ D I+R+ DN+W + +GPCGP SEI D G Sbjct: 120 GDKLYITIHTEDDEAFDIWHNVVGVPEDHIVRLA--DNWWEIG-SGPCGPDSEIHIDLGP 176 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++EIWNLVF QF Q L +IDTG GLER+A+V+Q Sbjct: 177 ERGCGKPTCGPGCDCDRFLEIWNLVFTQFNQMPDGTYPPLKNKNIDTGAGLERLASVVQG 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K +N++ DL +I+ + ++ ++Y + V+ +VI DH+RS +F+I DGILP+NEGR Sbjct: 237 KPSNFETDLIFPIIEYAAKIANVEYGKDKATDVSLKVIADHVRSMTFMIGDGILPSNEGR 296 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ +ARLLG E + + + G AYP L++ I++ + E+ Sbjct: 297 GYVLRRILRRAIRHARLLGINEMFLTGAVDVVIGMFGHAYPNLVEKADFIKKVVEMEETS 356 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL +G LL+ + L +L+G AFKL DT G P ++ ++IL G+ +D Sbjct: 357 FLRTLKQGCELLNEEIEKLKAENKTVLDGATAFKLNDTFGFPWELTEEILEEAGMT-MDK 415 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ ALE QR AR + + + + Sbjct: 416 EGFDAALEVQRKMAREARND----------------------------KEGRPVVYNTSG 447 Query: 476 LCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + + + + +E A G V V+ D T F+AE GGQLGD G Sbjct: 448 INVAELKVDEAATEAKIVKMYPAHDAQPIENAADGTDVAVICDVTAFHAEGGGQLGDIGT 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + +K +G + V G + ++ +D + ++ NH+ATHLL Sbjct: 508 ITASTGVIAVNVTKKLPDGAVIMIGSVTEGTVAVGDAVTFAVDKARKMDIARNHTATHLL 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV+Q GS + PD LRFD +H +T+ ELK +E VN+ + V Sbjct: 568 HAALKQVLGAHVNQAGSYVGPDRLRFDFSHFSQVTAEELKEVEAIVNEQVLAGKAVNIEE 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA AL G KY + VRVV+V S CGG+HVS+T +I + IVSE Sbjct: 628 LPIEEAKKKGATALFGEKYGNIVRVVTVP-----DFSMEFCGGSHVSNTAQIGMFKIVSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S AG+RRIEA+TG A +H+ +E + LA+ LK +V R+E + E + Q Sbjct: 683 GSSGAGVRRIEAVTGHGAVAHVNATEEMVNGLAAELKCRCCDVPTRLEALQCELKAAQKK 742 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + ++ +S V + ++ L+++ D ++ K+ ++ + Sbjct: 743 AEELAAEIAKVQVSNVADQIKDANGVPVLVQKVNADSVDALRNLGDQMRDKVGGVVV--L 800 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +K S+L + T+D + + +A ++ + AK+ GGGG GGRP MAQ+G + K D+ Sbjct: 801 AAVMGEKVSILTMATKDAVAKGVHAGNIVKAVAKLCGGGG-GGRPDMAQAGAKDVAKVDE 859 Query: 888 AIAGVASFL 896 A+A + Sbjct: 860 ALAAAFDIV 868 >gi|149369737|ref|ZP_01889589.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49] gi|149357164|gb|EDM45719.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49] Length = 872 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 334/919 (36%), Positives = 481/919 (52%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FLEFF+ H ++PS+ ++ +DPTLMF NSGM PFK F G +P + Sbjct: 1 MKANEIRAAFLEFFESKKHSIVPSAPMVLKDDPTLMFVNSGMAPFKEFFLGNAQPKNTRL 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ +D Sbjct: 61 TDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKEEAIAWAWELLTEVLKID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D EA+ +WKK ++ D+I++ DNFW M + GPCGPC Sbjct: 121 KDMLYVTVFEGSDDADNLKMDTEAYDIWKKY--IAEDRILKGNKKDNFWEMGDQGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + +EIWNLVFMQ+ ++ ILP IDTGM Sbjct: 179 SEIHVDIRSAEEKAAVDGKSLVNMDHPQVVEIWNLVFMQYNRKANGTLEILPNKHIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ VLQ+ +NYD D+F +I+ E +T +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMVLQDVKSNYDTDVFTPIIREIETITDTEYGKDEKIDIAIRVISDHVRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L ++MG A+PE+ K Sbjct: 299 ADGQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVTVLVSKMGEAFPEIKSQKQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE ++ E+ F +TLD+GLVLLD ++ ++G F+L DT+G P D+ IL Sbjct: 359 LIENVIKEEESSFLRTLDQGLVLLDRMIEGQKGSTEISGAKVFELKDTYGFPEDLTDLIL 418 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G F Q L EQ++R + S + W L + +F+GYD L Sbjct: 419 REKGYT-YSKEEFEQKLAEQKARGKEA-----SESKNDDWTILLDDAEE-EFVGYDRLSA 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RK V G+ ++VF+ TPFY E G Sbjct: 472 NVKLTRYRK---------------------------VTSKKDGEMYQLVFNLTPFYPEGG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G G + KK + +H + + +D +R ++ Sbjct: 505 GQVGDKGYVQAPGGDVLYILDTKKENNVIIH--FTKNLPNNLTETFKAQVDENHRFRIEC 562 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH L ILG+HV Q GS + LRFD +H +T+ EL+ +ED VN IA Sbjct: 563 NHSATHLLHQGLREILGTHVEQKGSSVHSKYLRFDFSHFSKVTAEELQEVEDFVNARIAG 622 Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L R + E+AIA GA AL G KY D VR V S LCGGTHV +T + Sbjct: 623 RLDFEEKRAVPMEEAIAEGAMALFGEKYGDAVRTVRFG------QSIELCGGTHVKNTAD 676 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SES++ +G+RRIEAIT ++H D+ + S L ++ V +E+I Sbjct: 677 IWHFKIKSESAVASGVRRIEAITNHALKNHFSDNDKAFSEVKSLLNNTKKPV-EAIEKIQ 735 Query: 765 EEYRKLQLIHAKR---KLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819 E +L+ + K + DL +I NF++ + ++D+ LK + L + Sbjct: 736 AENSELKKQIEQLLKDKAKNIKGDLKNQIVEINGANFLAKEL-DLDAGGLKDLAFELGGE 794 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 I++ + +L G KA + + +DL NA + R K + GGG GG+P A + Sbjct: 795 IEN-LFILFGSKAGGKALLTCYIDKDLAKEKDLNAGTIVRELGKHIQGGG-GGQPFFATA 852 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N ++A+ V +++ Sbjct: 853 GGKNPEGIEKALEAVKAYI 871 >gi|332179704|gb|AEE15393.1| alanyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796] Length = 854 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 328/900 (36%), Positives = 517/900 (57%), Gaps = 52/900 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL +F++ GH +LPS SL+P DPT++FT +GMVPFK F G+E+P ++ Sbjct: 1 MTSDDIRRLFLNYFKERGHTVLPSFSLVPE-DPTILFTIAGMVPFKPYFLGREEPPFKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R ND++ VG+T RHHTFFEMLGNFSFG YFKE+AI AW +T+ L Sbjct: 60 TTSQKCLRT----NDIEEVGKTARHHTFFEMLGNFSFGDYFKEKAIPFAWVFVTEVLHLQ 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+IT+Y +D+E++++W+ + + A+KI R DNFWS GPCGPCSEI++D+GE Sbjct: 116 KERLFITIYKDDDESYEIWRSL-DIPAEKIYRSGEKDNFWSAGPVGPCGPCSEIYYDRGE 174 Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P S + +R++EIWNLVFMQ+ + + +L K IDTGMGLER+A+VLQ Sbjct: 175 NFGCKRPDCSPLCDCDRFLEIWNLVFMQYNRDEESNLTLLSKKGIDTGMGLERIASVLQG 234 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+ DL +I+ +TG++Y+G I+ RV+ DHLR + F I+DG+LP+NEGRGY Sbjct: 235 KDSNYETDLIYPIIEKLSSITGIEYKGKGIIPLRVMSDHLRGAVFAISDGVLPSNEGRGY 294 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 V+RR++RRA+ ++ L GY P + +P + +YPEL + K I + +RSE+E+F Sbjct: 295 VVRRLLRRALTFSHLSGYQTPFIYKAVPTVSNIYRHSYPELFEKKDYIIDAIRSEEEKFS 354 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 ++L GL + + ++ + KD I++G++AF LYDT+G P+++ +++ G+DI FN Sbjct: 355 QSLKDGLSMFNKLMPQIKKDGIISGEIAFLLYDTYGFPVELTKEMAAEFN-IGVDIEGFN 413 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + L ++++ +R S + + ++F+GYD L+ Sbjct: 414 ELLMQRKNLSRQGSQFVD---------EIITTSFTSEFVGYDNLK--------------- 449 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +S + I + V ++G++ ++ ++TPFY E+GGQ+ D G + + Sbjct: 450 --------TNSKILGIYKNNNEVRSLLAGEEGYIILNKTPFYPESGGQVSDIGYIVSENS 501 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++T VQ++ + IF VE G + ID + RR S NH+ TH+LH L Sbjct: 502 TFRVTSVQREKDAIFHF-GKVESGSFCAGDYVEAEIDIKRRRLSSSNHTCTHILHAVLRE 560 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 G V Q GS ++ + LRFD S ++ ++ IE +VN II +N V+ + M+ EDA Sbjct: 561 KFGETVKQKGSFVSDELLRFDF-FSNALSDEDIADIERSVNKIIMENFKVIVQEMDLEDA 619 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I SGA AL KY RVRVVS++ SS LCGGTHV TGEI IV + SI + Sbjct: 620 IKSGAIALFSDKYKSRVRVVSIDS-----VSSELCGGTHVKMTGEIGTFVIVKQESIASS 674 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKR 777 +RRIEA TG +A + + + L + L S + + + +E +K Sbjct: 675 VRRIEAFTGLKALKYFQQKRKDLDEIDKILDASGSPLKKSLSILKDFDETKKRLREVTMN 734 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 L++ +L+ +I + S + S+++ +D + + + I+ + ++ + AS Sbjct: 735 YLRMKANNLTVEEIGKFSLYSENLDGFASEDMLFFVDLARNRFDNLILFIYSVNNQS-AS 793 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ +++ L +A +LA++ + GGG GGR ++Q G N NK + AI + FLK Sbjct: 794 FVLSISDKLSQSLSAKELAKVITS-VTGGGAGGRDKVSQGGIKNINKLNSAIIALKDFLK 852 >gi|116629092|ref|YP_814264.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|238853835|ref|ZP_04644200.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4] gi|282852129|ref|ZP_06261486.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311111122|ref|ZP_07712519.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22] gi|122273910|sp|Q045P6|SYA_LACGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116094674|gb|ABJ59826.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|238833530|gb|EEQ25802.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4] gi|282556693|gb|EFB62298.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311066276|gb|EFQ46616.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22] Length = 882 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 324/920 (35%), Positives = 499/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKQLTSSQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF QF + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I+ +E+++ KY + V ++I DH+R+ SF IAD Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I+ Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E+ERF TL GL LLD +++ D+ ++G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F++ ++ Q+ RAR L S ++ + +L ++F Y L Sbjct: 414 DAGLK-VDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLIDIVVNDKLVDKA-DGEHATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H + L +L +D + RR L Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDIILPLEKGQEYILKVDQKRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + + + GA AL G KY D VRVV + S+ CGGTH +T +I Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES++ AG RRI A+TG A ++ +DE LK + +K +V ++ + Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKISSLE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+ R Q + K Q+N ++ + ++ +L+ + D + Sbjct: 742 EDLRASQKEAEQLKAQINKAKAGDLFNDVKQVKGLTVIAAQADVEGMNDLRELADNWKSS 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L KA+++I + + + A DL + +A + GGGG GGRP+MAQ+G Sbjct: 802 DKSDVLVLAA-EVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N AIA V +++ Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879 >gi|154493963|ref|ZP_02033283.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC 43184] gi|154086223|gb|EDN85268.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC 43184] Length = 875 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 337/920 (36%), Positives = 485/920 (52%), Gaps = 76/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D+EA W+K L II +DNFW M +TGPCGPC Sbjct: 121 NPDRLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKAHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPARVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + V RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTAYGKDKQQDVAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + +++G AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKNVISGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +I FN +++Q+ RAR + W LKE G F+GYDL Sbjct: 419 ILRENGMEA-NIDEFNVEMQKQKDRARNA-----AAIETGDWVVLKE--GGCNFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V DQTPFYAE Sbjct: 471 ECDAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D + + D +++ V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDETVDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINEKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V++ I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGN------SIELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L +V ESSI AG+RRIEA+T + A ++ + L+ L + + N+ +++ Sbjct: 674 GMIGSLRVVGESSIAAGVRRIEAVTAEAAENYTFMLQDSLRELRAMFN-NVPNLSQTIKK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817 EE +L+ + K K+QL ++L + V ++ E +K + ++ Sbjct: 733 AIEENAELKKQVSDYVKEKVQLLKKELIAKAVERNGVKVIAFR-GEASVDAIKDLAFQIK 791 Query: 818 --KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874 + + + GI +K +++++++E L+ + NA L + +AK++ GG GGG+PH Sbjct: 792 GESNTEEKVFFVAGIKDGEKCALMVMLSEPLVAEGLNAGKLVKEAAKLIQGG-GGGQPHF 850 Query: 875 AQSGGPNGNKADQAIAGVAS 894 A +GG N +AI + Sbjct: 851 ATAGGKNVAGLGEAIEHILD 870 >gi|325833382|ref|ZP_08165831.1| alanine--tRNA ligase [Eggerthella sp. HGA1] gi|325485306|gb|EGC87775.1| alanine--tRNA ligase [Eggerthella sp. HGA1] Length = 878 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 322/928 (34%), Positives = 487/928 (52%), Gaps = 87/928 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59 + IR +L FF++ G + PSSSLIP +DP+L+ T++GMV FK F Q+ Y Sbjct: 4 MTSAEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 62 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TTVQKCVR ND+D +G T RH +FFEMLGNFSFG YFKE A++ T+ Sbjct: 63 GTTTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY TVY +D+E ++WKK+ G+ D I R+ +DNFW TGPCGPCSEI+FDQ Sbjct: 119 LPAERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQ 177 Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GE G P + +R++E WNLVF Q++ Q LPK +IDTGMGLER+A +L Sbjct: 178 GEDFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAIL 237 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NY+ D+ + L+ E++TG Y + ++ R++ DH R+ +F+IADGILP+NE Sbjct: 238 QGVQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNE 297 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ LLG +P + + + MG YPE+++ + L + SE+ Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEE 357 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERFG L +G LD L+ L E+L GD AF L+DT+G P+++ +++ RG +D+ Sbjct: 358 ERFGANLRQGRAFLDEALAELE-GEVLPGDRAFTLHDTYGFPVEVTRELCDERG-IEVDM 415 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F + ++EQR RARA + + + E G T+F+GY Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMDEILEAVGPTEFLGYT----------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V A+V+ G V+ +G + VV D TPFYAE GGQ+GD G Sbjct: 465 ------------KNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGDAG 512 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + + D ++ +G+ H VE G L ++ ID R ++ NH+ATH+ Sbjct: 513 VLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTATHI 572 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + LRFD TH + +T+ ++ +E N I +N PV Sbjct: 573 LHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIVEVERLANQKIMENHPVRAY 632 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + A +G AL G KY + VRV+ +E S LCGGTHVS+T EI + I S Sbjct: 633 ETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKITS 687 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+S+ A +RRIEA+T A +++ + +LK A L+V +V R + + LQ Sbjct: 688 ETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDLQT 747 Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ A + + E D+ +++++ D L+ ++ Sbjct: 748 KLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQPGAA 807 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG------ 879 ++ K+ K ++L T + ++ F+A + + + G Sbjct: 808 VLATEKDGKPTLLAAGTPEAVEAGFDAGAVIKAIS------------------GNIKGGG 849 Query: 880 -----------PNGNKADQAIAGVASFL 896 + + D A+ L Sbjct: 850 GGKAAMAQAGGKDASGIDAALQAARDML 877 >gi|154148426|ref|YP_001406547.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381] gi|205830014|sp|A7I206|SYA_CAMHC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|153804435|gb|ABS51442.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381] Length = 845 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 344/896 (38%), Positives = 509/896 (56%), Gaps = 59/896 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64 IR FL+FF GHE++ S+ L+P +D +L+FTN+GMVPFKNIFTG + T+ Sbjct: 2 DIRKEFLDFFASKGHEIIASAPLVP-DDASLLFTNAGMVPFKNIFTGAVPRPTPPIRTSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ LD+ + Sbjct: 61 QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKENAIAYAWEFITEILKLDKDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 LY+TV+++D+EAF++W K ++ ++I R +DNFW+M +TGPCGPCSEIF+DQGE Sbjct: 121 LYVTVHEKDDEAFEIWAK--HIAKERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEYF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +G+R++EIWNLVFMQFE+ LPK SIDTGMGLER+ + + +N Sbjct: 179 HGKEDYMGGDGDRFLEIWNLVFMQFERDKAGNLSPLPKPSIDTGMGLERVTAIKEGVFSN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YD +F LI A E++ G Y+ + ++RVI DH+RS +FLIA G+ EGRGYVLRR Sbjct: 239 YDSSIFMPLIHAVEKLCGKPYKYESGASYRVIADHIRSITFLIAQGVNFDKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG EP M L+ +C MG Y L++ K I+E ++ E+ERF T+ Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDNVCELMGHHYSYLLEKKETIKEIIKLEEERFLSTIS 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 GL L L++ ++ +G++AFKLYDT+G PLD+ D+L G +D F++ + Sbjct: 359 AGLELFKAQLANT--KDVFSGEIAFKLYDTYGFPLDLTADMLREIGKK-VDEKKFDELMN 415 Query: 424 EQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQ++RA+A G G EK + +L EK+G +FIGY+ ++ Sbjct: 416 EQKARAKASWKGSGDKIKEKGDFKALLEKFGENKFIGYETMKS----------------- 458 Query: 483 DLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S + AI+ V+E +G ++ D+TPFYA++GGQ+ DTG G Sbjct: 459 ------QSKILAILNNDFRNVDELKAGNIGWIMLDETPFYAQSGGQIYDTGLINGSNKVT 512 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G +V + R + + +HSATHLLH AL IL Sbjct: 513 DTQKFFGLNLSEVETSTNLKVG------DIVKCEVDEARIETARHHSATHLLHLALREIL 566 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GS V Q GS + + LRFD T+ K +TS +L IE+NVN I++ T IM+ +AI Sbjct: 567 GSGVGQAGSSVDSERLRFDFTYPKSLTSEQLLKIENNVNSQISKGGASKTEIMDINEAIK 626 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA A+ KY D+VRV+++ S CGGTHV + EI YIV ES + AG+R Sbjct: 627 SGAIAMFSEKYGDKVRVLTLGE------SKEFCGGTHVRNLWEIGSFYIVKESGVSAGVR 680 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ + A ++ + + + LK + + ++++ +E + L+ +K Sbjct: 681 RIEAVCSKAAINYAKNFRSEFSEVQNALKSN--EALSAIKKLKDEIKSLKNEISK---AS 735 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + + + + F+ ++K+ +D L+ + I+ + ++ + + Sbjct: 736 AAKVIDLDEKNGIKFVVSEFDG----DIKTKIDELKNENDK-IVAVFFKVEDGRVQIAAG 790 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 V A ++ + AK+LGGGG GGR A +GG + K D+A+ +K Sbjct: 791 VKNAP---LKAGEIVKQIAKILGGGG-GGRDDFATAGGKDMTKIDEAVNFARDLIK 842 >gi|168182642|ref|ZP_02617306.1| alanine--tRNA ligase [Clostridium botulinum Bf] gi|237796002|ref|YP_002863554.1| alanyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657] gi|182674085|gb|EDT86046.1| alanine--tRNA ligase [Clostridium botulinum Bf] gi|229262453|gb|ACQ53486.1| alanine--tRNA ligase [Clostridium botulinum Ba4 str. 657] Length = 879 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 331/908 (36%), Positives = 513/908 (56%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FT + P + V Sbjct: 4 MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTRLQVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L Sbjct: 64 TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179 + +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+ Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE + + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 GEIKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K ++ +++G Y+ + ++ R+I DH+RS +F+I+DGILP+NEGR Sbjct: 239 VDTIFEVDTIKAILDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKRGYIKKVIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + + ++L+GD AFKLYDT+G P+++ ++IL G ID Sbjct: 359 FDETIDAGMQILNDYIEEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ ++EQR RAR+ E + + T F GYD L Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V I++ E G + +V TPFYAE GGQ+GDTG Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K G +H + G + E ++L ++ + R + NH+ATH+LH Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V T++MN Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + IVSE+ Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773 + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + ++ ++ Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL ED S +I V S + ++D L+ + D ++ +QSG+++L G Sbjct: 750 ALKLKLASGAEDEILNSIKEIKGVKVASAAVKDIDGNALRDLGDKVRDNMQSGVVVL-GS 808 Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + + T+D + + + + A + GGGG GGRP MAQ+GG + NK + AI Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867 Query: 890 AGVASFLK 897 V + ++ Sbjct: 868 KTVETVVE 875 >gi|152991942|ref|YP_001357663.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1] gi|205830233|sp|A6Q747|SYA_SULNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151423803|dbj|BAF71306.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1] Length = 857 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 356/899 (39%), Positives = 518/899 (57%), Gaps = 55/899 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR TFL++FQ GH+L+PSS L+P +DPTLMFTN+GMV FKNIFTG+ P T+ Sbjct: 2 DIRKTFLDYFQSKGHKLVPSSPLVP-DDPTLMFTNAGMVQFKNIFTGEAPIPNPPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 Q C+RAGGKHNDLDNVG T RHHT FEMLGNFSF YFKE AI AW+ +T E DL Sbjct: 61 QTCLRAGGKHNDLDNVGYTARHHTLFEMLGNFSFADYFKEDAIAYAWEFVTDEKYLDLPV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181 ++++TV+D D+EA+ +WKK +S D+I+R DNFW M +TGPCGPCSEIF+DQG E Sbjct: 121 EKIWVTVHDSDDEAYDIWKKY--ISEDRIMRFGDKDNFWQMGDTGPCGPCSEIFYDQGAE 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 EG+R++EIWNLVFMQ+E+ K LPK SIDTGMGLER+ + + Sbjct: 179 HFHSEEDVMGGEGDRFLEIWNLVFMQYERDEKGTLNPLPKPSIDTGMGLERVVAIKEGVF 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNY LF ++ ++ G Y+ N ++RVI DHLRS SFL+A G+ EGRGY Sbjct: 239 NNYHSSLFMPFLEKIGELVGKPYDFDAPNSASYRVIADHLRSVSFLLAQGVNFDKEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA+ + LLG EP M L+ L MG Y L I+ +++ E+ERF Sbjct: 299 VLRRIMRRAIRHGYLLGLREPFMYKLVDTLVDLMGKQYDYLASRAEAIKTSMKMEEERFF 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +T++ G+ L + L + ++ NG+VAFKLYDT G PLD+ +D+L + +DI +FN Sbjct: 359 ETIEAGIKLFNEELKNT--QDVFNGEVAFKLYDTFGFPLDLTEDMLREKN-IRLDIDAFN 415 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +E Q+++++A+ G G T + LKE++ +F+GY+ Sbjct: 416 KKMEAQKAQSKANWKGTGDAATTGDFKLLKEEFNTNEFVGYETQE--------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V++ V A++ + +A++G K V+ ++TPFYAE+GGQ+GD G Sbjct: 461 --------VTTKVLALLDENFKKTDAING-KGWVLLEKTPFYAESGGQVGDKGKLEIRNE 511 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L+I + K + G L + +D ++ +HSATHLLH L Sbjct: 512 KLEIRVLDTKKF--LDMNLSEVEGKLSVGDEVKAVVDPSR-VEIEKHHSATHLLHAGLRA 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG H++Q GS LRFD +H K +T+ E++ +E VND I++ +P T IM+ ++A Sbjct: 569 ILGDHIAQAGSLNDDKRLRFDFSHPKAMTAEEIEKVEAWVNDKISRAIPRKTEIMSVDEA 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 +GA AL G KY + VRVVS+ G S LCGGTHV +T +I L I ES + AG Sbjct: 629 KKAGAMALFGEKYGNEVRVVSM-----GDASIELCGGTHVDNTAQIGLFMITKESGVSAG 683 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEAI G+ A + E+L + +K N + + ++ E+ + L+ A Sbjct: 684 VRRIEAICGRAAVEKVKALREELSQIKEEVKNQ--NPIAGIAKLKEQIKTLKSEVASAMS 741 Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 E + + + I+ EV + ++KS++D ++ K + +ML +K +L Sbjct: 742 ASQKELSTVNVNGV----NVIVEEVQTGDIKSMIDDVKNKYDNVAVMLFQKKGDK--VLL 795 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +++ A D + A ++GGGG GGRP AQ+GG + ++ A+ +L + Sbjct: 796 AAGSKNTP--IKAGDWIKAIAPIVGGGG-GGRPDFAQAGGKDASRITTALEEAKVYLSE 851 >gi|88809533|ref|ZP_01125041.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805] gi|88786752|gb|EAR17911.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805] Length = 894 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 337/912 (36%), Positives = 500/912 (54%), Gaps = 56/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF++ GH +PS+SL+P DPT++ T +GM+PFK IF GQ++ T Sbjct: 16 TGAEIREAFLSFFEQRGHRRMPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD Sbjct: 75 TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ + + L +IDTGMGLERMA +LQ+ N Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQSNRDAQGVLTPLANRNIDTGMGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ G+ Y + + +VI DH R+ + LI+DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADRAGVDYYQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P + + A M SA+P+LI+ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLIERREVILAELQREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ K ++G+ AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 370 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTQEIAEEHGL-AVDLAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+QR RA+A ++ + + I + T+F GY+ L Sbjct: 427 TAMEQQRQRAKAAAVSIDLTLQDAID-QVAAGLQDTEFRGYEQLEQ-------------- 471 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 SS ++A+V GE + A +G V+VV D TPFY E GGQ+GD G + D Sbjct: 472 ---------SSSIQALVVNGEPAQSASAGDAVQVVLDVTPFYGEGGGQIGDCGTLVADGQ 522 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + + + +FVH VERG L + +D RR+ NH+ATHLL Sbjct: 523 AGDGLIVMVESVSRNRSVFVHSGRVERGALSVGDVVHGRVDRACRRRAQANHTATHLLQA 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ + Q GS ++ D LRFD + +T+ EL IE +N IA + + M Sbjct: 583 ALKQVVDPGIGQAGSLVSFDRLRFDFHCPRAVTTEELGRIESLINGWIADAHALEVQEMA 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A+GA A+ G KY D V D S LCGGTHV +T EI L IVSES Sbjct: 643 IEQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVRNTAEIGLFKIVSESG 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772 + AGIRRIEA+ G +L +D +K L K G ++ RV + +E + Sbjct: 698 VAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVSALQDELKATGKALA 757 Query: 773 --IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + + + + VD L+ +L ++ G +++G Sbjct: 758 AAQAELAVAKSAALAAQAVAVGNFQLLVERLDGVDGSGLQGAAQSLVDQLGDGGAVVIGG 817 Query: 831 SKE----KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + K ++ +D++ + A AK+ GGGG GGRP++AQ+GG +G Sbjct: 818 LPDPADQGKVILVAAFGKDVIAAKLQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDGASL 876 Query: 886 DQAIAGVASFLK 897 D A+ + L+ Sbjct: 877 DAALTAARAELE 888 >gi|227513125|ref|ZP_03943174.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577] gi|227083700|gb|EEI19012.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577] Length = 887 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 63/918 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IR FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 8 MKTLSSSQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K Sbjct: 68 PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D+ +LY+TVY +D +A K W + G+S D II I DNFW + + GP GP SEIF Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYW-EAVGVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G P E R++E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++ Q N++ DLF +I+ +E + K + V R+I DH R+ + I D Sbjct: 240 RVVSIFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYV+RR++RRA+ + LG + L P + + S YPE+++ + IE Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQREYIE 359 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE++RF +TL GL LL V++ ++G AFKLYDT+G P ++ ++ Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + +Q+ RAR G S ++ L + ++++GYD L Sbjct: 420 EVGL-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKDDSEYVGYDTLDVK 476 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV+ ++V E+ + +EV+FD+TPFYAE GG Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513 Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + ++ + A H I + L L +D ++ Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVKGQRYHLVVDKLFHSRVEK 573 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL +L +LG H Q GS + P LRFD H +T +L+ +E VN I + Sbjct: 574 NHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIFK 633 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + + + GA AL KY D+VRVVS+ G S CGGTHV +T +I Sbjct: 634 EIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRDI 688 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSES + AGIRRIEA+T + A L Q +LK ++ LKV+Q +V RVE++ Sbjct: 689 GLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQLQ 748 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E + L+ + +L + + ++ II + +L+ + D + K Sbjct: 749 DEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRSK 808 Query: 820 IQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G +KA++++ V+++ + D A DL + A + GG GGGRP+MAQ+G Sbjct: 809 GLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQAG 866 Query: 879 GPNGNKADQAIAGVASFL 896 G + + D+A+ +L Sbjct: 867 GKDPSGLDKAMKAAIEWL 884 >gi|295106657|emb|CBL04200.1| alanyl-tRNA synthetase [Gordonibacter pamelaeae 7-10-1-b] Length = 882 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 317/932 (34%), Positives = 493/932 (52%), Gaps = 91/932 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQ 59 + + IR +L +F+ G + PSSSLIP +DP+L+ T++GMV FK F Q+ + Y Sbjct: 4 MSTAEIREKYLSYFEAKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKQLEAPYV 62 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TT QKCVR ND+D +G T RH +FFEMLGNFSFG YFK+ A++ T+ Sbjct: 63 GTTTAQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGAYFKKEMCAWAYEFSTEVLG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY TVY +D+E ++WK + G+ D I R+ DNFW TGPCGPCSEI++DQ Sbjct: 119 LPAERLYFTVYLDDDETIEIWKGL-GVPEDHISRLGEEDNFWRAGPTGPCGPCSEIYYDQ 177 Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GE G P + +R++E WNLVF Q++ Q LPK +IDTGMGLER+A ++ Sbjct: 178 GEEFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGSFVPLPKKNIDTGMGLERIAAIM 237 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NY+ D+ + L+ E++TG Y + + ++ R++ DH RS +F+IADGILP+NE Sbjct: 238 QGVQSNYETDVLRSLVGVGERLTGAVYGADADADLSLRIMADHSRSVTFMIADGILPSNE 297 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ LLG +P + + + MG YPE+++ + L + SE+ Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNEYVDEIVNLMGDVYPEIVENRELARRVILSEE 357 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERFG TL +G LD L+ + E+L GD AF L+DT+G P+++ +++ RG +D+ Sbjct: 358 ERFGATLRQGRAFLDEALAGIE-GEVLPGDRAFTLHDTYGFPVEVTRELCGERG-IEVDM 415 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F + ++EQR RARA + + + E G T+F+GY Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMNEILEAVGPTEFLGYT----------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V AIV+ G+ V+ +G++ VV D TPFYAE GGQ+GDTG Sbjct: 465 ------------KNEADARVLAIVKDGQQVDVLEAGEEGRVVLDATPFYAEKGGQIGDTG 512 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVER----GILRTEMSLVLTIDYQNRRQLSINHS 588 DG+ + + D ++ +G+ H V G ++ ++ ID R ++ NH+ Sbjct: 513 VLAEDGVVVAVLDTKEPEKGLIAHTVKVMDEPAGGRIQVGDTVHAAIDVPRRERIRRNHT 572 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL +LG HV Q GS + LRFD TH + +T+ ++ +E N+ + +N P Sbjct: 573 ATHILHWALRQVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANEKVMENHP 632 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + A +G AL G KY + VRV+ +E S LCGGTHVS+T EI + Sbjct: 633 VRAYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFV 687 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SE+S+ A +RRIEA+T A +++ + +LK A L+V +V R ++ + Sbjct: 688 KITSETSVGANLRRIEAVTSFDALAYMNRVEAELKESAEALRVPLFDVSERTAANVKQLK 747 Query: 769 KLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +LQ + + + + +S + + E D+ ++++ D L+ ++ Sbjct: 748 ELQTKMKRNRQTIADDGISALVEGAVEAKGGYPVVFGRLPEADAGQMRNAWDVLRARLGK 807 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-- 879 ++ K+ K ++L T + ++ F+A + + + G Sbjct: 808 PGAAVLATEKDGKPTLLAAGTPEAVEAGFDAGAVIKAIS------------------GNI 849 Query: 880 ---------------PNGNKADQAIAGVASFL 896 + + D A+ L Sbjct: 850 KGGGGGKAAMAQAGGKDASGIDAALEAAREML 881 >gi|300362251|ref|ZP_07058427.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03] gi|300353242|gb|EFJ69114.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03] Length = 882 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 325/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKQLTSSQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF QF + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I+ +E+++ KY + V ++I DH+R+ SF IAD Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I+ Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E+ERF TL GL LLD +++ D+ ++G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F++ ++ Q+ RAR L S ++ + +L ++F Y L Sbjct: 414 DAGLK-VDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H + L +L +D + RR L Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDIILPLEKGQEYILKVDQKRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + + + GA AL G KY D VRVV + S+ CGGTH +T +I Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES++ AG RRI A+TG A ++ +DE LK + +K +V ++ + Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKISSLE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+ R Q + K Q+N ++ D+ ++ +L+ + D + Sbjct: 742 EDLRASQKEAEQLKAQINKAKAGDLFNDVKQVKDLTVIAAQADVEGMNDLRELADNWKSS 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L KA+++I + + + A DL + +A + GGGG GGRP+MAQ+G Sbjct: 802 AKSDVLVLAA-EVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N AIA V +++ Sbjct: 860 GKNPAGLKDAIAEVLQEVEE 879 >gi|332044324|gb|EGI80518.1| alanyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4] Length = 871 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 327/921 (35%), Positives = 480/921 (52%), Gaps = 75/921 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+TFL FF+K H ++PS+ ++ +DPTLMF N+GMVPFK F G +P + Sbjct: 1 MKSQDIRSTFLNFFEKKKHSIVPSAPMVLKDDPTLMFVNAGMVPFKEYFLGNSEPKNTRL 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D Sbjct: 61 TDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D EA+ +WK+ +S D+I++ DNFW M E GPCGPC Sbjct: 121 KDILYVTVFEGSEDSDKLDMDTEAYDIWKQY--ISEDRILKGNKKDNFWEMGEQGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + G + + + +EIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHVDIRSAEEKAKVNGKDLVNMDHPQVVEIWNLVFMQYNRKANGSLEGLPNKHIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ VLQ +NYD D+F +I+ E +T +Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMVLQNVQSNYDTDVFTPIIREIETITDKEYNKNEKTDIAIRVISDHVRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVDVLSDKMGEAFPELKTQKQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE ++ E+ F +TLD+GL+LLD ++ E+L G F+L DT+G P D+ IL Sbjct: 359 LIENVIKEEETSFLRTLDQGLLLLDRIIETTKGKEVL-GAKVFELKDTYGFPEDLTDLIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ++ FN LE+Q+SR R S W +L E +FIGYD L Sbjct: 418 REKGYT-YNVEEFNAELEKQKSRGRES-----SALKSDDWTTLVED-AEQEFIGYDALEA 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RK V G+ ++VF+ TPFYAE G Sbjct: 471 NVKITRYRK---------------------------VTSKKDGEMYQLVFNLTPFYAEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + KK + +H A + + +D + R + Sbjct: 504 GQVGDKGYLEDAHGDVVYILDTKKENNVIIHFA--KNLPKHLNETFKAVVDAKQRYRTEC 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH L +LG+HV Q GS + LRFD +H +T+ +L+ +ED VN I Sbjct: 562 NHTATHLLHQGLREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTNEQLQEVEDFVNRRIDG 621 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + R + + AI GA AL G KY D VR + S LCGGTHV +T + Sbjct: 622 KLELEENRNVPMDQAIEDGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVKNTSD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I IVSE ++ +GIRRIEAIT + + + S L + + + ++ Sbjct: 676 IWHFKIVSEGAVASGIRRIEAITSDAVKDFYAENSKVFSEMKSLLN-NAKDPKEALVKLQ 734 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCH------KIADVNFMSHIISEVDSKELKSVMDALQK 818 E L+ L+ ++L +I V F++ + ++D+ +K V L + Sbjct: 735 TENNDLKKQIESL-LKDKAKNLKAELENNLTEINGVQFLAEKV-DLDASGIKDVAFDLGQ 792 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 K ++ + ++ G KA + ++++L+ NA + R K++ GGG GG+P A Sbjct: 793 KHKN-LFLIFGADTGGKALLTCYISKELVAEKGLNAGTVVRELGKLIQGGG-GGQPFFAT 850 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N +A+ +++ Sbjct: 851 AGGKNPEGIQEALNEAKKYIQ 871 >gi|312139552|ref|YP_004006888.1| alanine-tRNA ligase alas [Rhodococcus equi 103S] gi|311888891|emb|CBH48204.1| alanine-tRNA ligase AlaS [Rhodococcus equi 103S] Length = 890 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 320/921 (34%), Positives = 488/921 (52%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+SLI +DP L+F N+GMV FK F GQ+ P Y Sbjct: 1 MQTHEIRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT Sbjct: 60 TSVQKCVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL++TVY +D+EA +WK+ +G+ ++I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGFDPERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RY+EIWNLVFMQ E+ + + LPK +IDTGMG+ Sbjct: 176 YDRGPEY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G Y + V RVI DH R++ LIAD Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RR + A+LLG +P M + + M +YPEL I Sbjct: 295 GVNPGNEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIV 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ F +T+ G + + ++ G+ AF L+DT+G P+D+ ++ Sbjct: 355 GVAVGEETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL+ +D F + EQR RA+ + T+ + GAT+F G++ L Sbjct: 415 EAGLS-VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A++ G V A +GQ VEV+ D++P YAE+GG Sbjct: 473 ----------------------EAHVLALISNGVRVPAATAGQDVEVILDRSPLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G +G+R+++ DVQK A+ ++VH V G + +++ +D + R+ + Sbjct: 511 QIADIGTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQITEGDVVLVQVDPEWRKGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG + Q GS P LRFD ++ ++ + IE N+ +A N Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAAN 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + + + A GA AL G Y D VRVV + GG S LCGGTHV ++ +I Sbjct: 631 HAVNTFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G+RR+EA G + +L + L +AS LKV V GRVE + E Sbjct: 687 PVTLLGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVER 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 + + K + H+ +V ++ V +L+ ++ ++ + Sbjct: 747 LKAAEKELEATKAAAVLASAGTFVDKAHRFGEVLLVAEQAPDGVAGNDLRGLVSDIRGRF 806 Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +++L+G + + K ++ T+ D A +L +GG G GG+ MAQ Sbjct: 807 GTQPAVVVLLG-NADGKVPFVVATTKAAQDLGIKAGELVSSFGPQIGGRG-GGKADMAQG 864 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + + A+ G + + + Sbjct: 865 SGSDVSGIPAALEGARARVAE 885 >gi|149196141|ref|ZP_01873197.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155] gi|149140988|gb|EDM29385.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155] Length = 899 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 331/946 (34%), Positives = 484/946 (51%), Gaps = 98/946 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59 M + IR ++ +FF+ H L+ S+SL+P + P L+FTN+GM F IF G++K Y Sbjct: 1 MLSSKEIRQSYFDFFKSKQHTLVSSASLMP-DSPNLLFTNAGMNQFVPIFLGEKKCPYTP 59 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+RAGGKHNDL++VG HHTFFEMLGN+SF YFK+ AI+ AW+ LTK Sbjct: 60 GRATDTQKCIRAGGKHNDLEDVGMDTYHHTFFEMLGNWSFNDYFKKEAIEYAWEYLTKVC 119 Query: 119 DLDQRRLYITVYDE----------DEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164 + + RLY TVY D+EA+ +W I GL I+ DNFW M Sbjct: 120 KIPKERLYATVYQPDKSSGDPADFDQEAYDIWADIFKADGLDPKVHIVNGDKKDNFWMMG 179 Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 ETGPCGPC+E+ D + + ++ IEIWNLVF+Q LP ++ Sbjct: 180 ETGPCGPCTELHIDLTPAGDTKGSLVNMDTDKCIEIWNLVFIQMNANPDGTFSDLPTKNV 239 Query: 225 DTGMGLERMATV---------LQEKTNNYDIDLFKHLIQASEQVTGMKY----------- 264 DTGMG ER+A++ +NY+ D+F + ++G KY Sbjct: 240 DTGMGFERLASIILNTKNFTDFNGIISNYETDIFTPIFDKLTDISGKKYTSTLPEKNELG 299 Query: 265 -------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 + + RVI DH+R+ SF IADGI P N R YVLRRI+RRA+ Y R +G Sbjct: 300 YFVAANDQEMVDIAFRVIADHIRTLSFSIADGIQPGNGDRNYVLRRILRRAVRYGRTIGL 359 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 +P L+ L +MG +PEL + + ++ ++SE+E F +TLDRG+ L + +S L Sbjct: 360 EKPFFYELVDTLADQMGEIFPELAKGRQHVKTVIKSEEEAFNRTLDRGINLFESEISKLK 419 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 K + ++ AF+L D G PLD+ + + +G +D+ F + + EQR RARA Sbjct: 420 KGDSISAAFAFRLADEQGFPLDLTELMAREQGYK-VDVDGFEKLMNEQRDRARAAQKK-- 476 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 E I S + T+FIGY+ N + V Sbjct: 477 ----EIISLSEIKTTEPTEFIGYEE----------------------DNSNEAQV----- 505 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 + V + +G + V+FD + Y E GGQ+GD+G G QI D QK + + Sbjct: 506 --KEVIKMKNG--LAVIFDSSVCYPEMGGQVGDSGTIAAGGKLYQIKDTQKNGDATLHYL 561 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 E ++++ D + R ++ NH+ATHLLH AL +LG HV Q GS + D L Sbjct: 562 VGDEA--PEEGEKVIVSYDIERRDKIRKNHTATHLLHKALQDLLGEHVEQKGSLVAADYL 619 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFD +H + + + E++ +E +N+ + N V T + N ++A A GA AL G KY+D VR Sbjct: 620 RFDFSHHQGLKADEIEKLELLINEKVILNSAVETHLKNIDEAKAMGAMALFGEKYDDDVR 679 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 VV + S LCGGTHV TG+I L I SE S+ AGIRRIEAITG A + + Sbjct: 680 VVKI-----DDFSLELCGGTHVKRTGDIGLFKITSEGSVSAGIRRIEAITGMDAVKYALN 734 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792 ++ L+ LA LK + RV+++ + LQ + K +L + +I Sbjct: 735 SNKVLQGLAGDLKCKVDTIPERVDKLSSNAKSLQKELDEAKSKLVALEADSLLEKAEEIN 794 Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFN 851 + + + D+ LK + +L+KKI SGI++ S K + V++DL F Sbjct: 795 GIKVLMLKVDN-DAATLKDMTHSLRKKIGSGIVVFAS-SANGKVVLTSGVSDDLTKQGFK 852 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A ++ ++AK +GGGG GG P AQ+GG A V ++ Sbjct: 853 AGEIVSIAAKQVGGGG-GGAPTFAQAGGRMPEAIPSAFKAVKELIE 897 >gi|205830258|sp|A4SGJ6|SYA_PROVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 885 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 327/921 (35%), Positives = 492/921 (53%), Gaps = 66/921 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +FL+FF H ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 1 MKSSDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+KE AI AW+LLT + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +D+E+F++W++ + + D I+R DNFW M ETGPCGPCSEI D Sbjct: 121 EERLYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + + + IE+WNLVF+Q+++Q LP+ +DTGMG ER+ V+Q K+ Sbjct: 181 D-GSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKS 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F+ L ++TG++Y + RVI DH R+ SF ++DG +P+NEGR Sbjct: 240 SNYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ YA+ LGY +P++ L+ + MG +PEL + + +++E+E Sbjct: 300 GYVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + +G++ + + L G+ AFKLYDT+G P D+ + + + GL +D Sbjct: 360 FLVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGL-QVDG 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + ++EQ++RAR G E+ + AT+F GYD L Sbjct: 419 EGFERCMQEQKTRARQDRREKQRGGAEEGSWEWFSDLHATEFTGYDGLEAD--------- 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I + + + +V D+TPFYAE+GGQ GD G Sbjct: 470 --------------ASIIGISRSKK---------NLLLVLDRTPFYAESGGQTGDRGWIE 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM----------SLVLTIDYQNRRQLSI 585 RL++TD QK + + +E + ++D + R+ Sbjct: 507 TGEYRLEVTDTQKDGDSFVHVVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLRQATER 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH L LG+HV Q GS + P+ LRFD +H +T E+ ++E VND I Q Sbjct: 567 NHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVNDCIRQ 626 Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + +DAI GA A G KY D VRVV + S LCGGTHV + G+ Sbjct: 627 AEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIPG-----ISVELCGGTHVDNVGQ 681 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEI 763 I L IV ESS+ AG+RRIEA+TG+ A + + +L + LK+ +V I Sbjct: 682 IGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAEKVAAI 741 Query: 764 WEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE R L+ A+ K +L + + + ++ ++ D++ L+ L++ Sbjct: 742 LEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAAQMLRQ 801 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + +L S E K S+ ++ + +A L R +A + GGG GG+ A Sbjct: 802 QFPLSAGLLCS-SAEGKVSLAAFASDRAVKELGIDAGKLIRQAAAAVKGGG-GGKAEFAT 859 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N + A ++ Sbjct: 860 AGGKNPEGMEDACRVFREAVR 880 >gi|134098622|ref|YP_001104283.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|291009600|ref|ZP_06567573.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|205830197|sp|A4FBD3|SYA_SACEN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|133911245|emb|CAM01358.1| putative alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 890 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 322/922 (34%), Positives = 494/922 (53%), Gaps = 62/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I F E F+K GH ++PS+SLI +DPTL+F N+GMV FK F G Y Sbjct: 1 MQTHEINQRFTEHFRKAGHTVVPSASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR G D+D VG+T RH+TFF+M GNFSFG YFKE A++ AW LLT Sbjct: 60 TSIQKCVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAMEHAWGLLTSSQADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL++TV+++DEEA LW+K++G+ A++I DN+W M GP GPCSEI+ Sbjct: 116 GYGFDPERLWVTVFEKDEEAAALWQKVTGIPAERIQVRDAKDNYWDMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ + + LP +IDTGMG+ Sbjct: 176 YDRGPKY-GREGGPVVDEDRYIEIWNLVFMQDIRGELPPKEGHPPIGELPTKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G Y + V RVI DH RS L+ D Sbjct: 235 ERVACLLQGVENVYETDLVRPVIAKAEELSGRSYGANHEDDVRFRVIADHARSGVMLVGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NE RGYVLRR++RR + RLLG EP++ + M +YPEL+ I+ Sbjct: 295 GVTPGNEARGYVLRRLLRRIIRSTRLLGVHEPVLGEFAAVVRDAMAPSYPELVTEFDRID 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +R+E++ F TL G + D ++ L G AF+L+DT+G P+D+ ++ Sbjct: 355 SVMRNEEDAFLSTLTAGSKIFDLAVADTKKAGGTQLAGAKAFQLHDTYGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + + EQR RA+ + SG + + +L +++G T+F+GY L+ Sbjct: 415 EQGLS-VDEHGFRELMSEQRRRAKEDAKSRKSGHGDLSTYRTLLDQHGTTEFLGYTDLQ- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V ++ G + A +G +VE++ D+TPFYAE G Sbjct: 473 ----------------------AQSRVLGLLVDGVPAKSAAAGTEVELILDRTPFYAEGG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ DTG G G+ +++ DVQ+ G+FVH A V G L + SL +D + R + Sbjct: 511 GQIADTGRLTGPGVEVEVHDVQRAVPGLFVHRAKVTAGELGVDTSLEAAVDSKRRHAIER 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHL+H A+ + G +Q GS +P +RFD T ++ A L +E+ VN + Sbjct: 571 SHSATHLVHAAVRSAYGKRAAQAGSLNSPGRMRFDFTAPAAVSGAVLGGVEEEVNSYLQN 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 ++ V + + A+ GA AL G KY D+VRVV + G +S LCGGTHV G++ Sbjct: 631 DVEVQSYTTTMDRAMELGAVALFGEKYGDQVRVVDM-----GDYSRELCGGTHVGRIGQL 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 ++ +V++SS+ +G+ R+EA+ G A H+ + + LA KV + R+ + Sbjct: 686 GVVKLVADSSVGSGVHRVEALVGMDAMRHISKEHLLVSRLAEQFKVPAEELPERIAGVVS 745 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819 R + + ++ ++ + V ++ + VD L+++ ++ + Sbjct: 746 RLRSAEKELEQLRVAQVLQSAGELAGKGTDVHGVTLVAEQVPDGVDGGALRALAGEVRGR 805 Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + S ++ L + K S ++ V D A L A + GG GGG+P MAQ Sbjct: 806 LGSRPAVVALFSADGD-KVSFVVGVNTPAQDLGLKAGKLVPSFAAEV-GGRGGGKPDMAQ 863 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 GG N AIA + + L + Sbjct: 864 GGGSNPAGITAAIAALRTGLDQ 885 >gi|145220398|ref|YP_001131107.1| alanyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265] gi|145206562|gb|ABP37605.1| alanyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265] Length = 893 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 327/921 (35%), Positives = 492/921 (53%), Gaps = 66/921 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR +FL+FF H ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 9 MKSSDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRA 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+KE AI AW+LLT + L Sbjct: 69 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLP 128 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TVY +D+E+F++W++ + + D I+R DNFW M ETGPCGPCSEI D Sbjct: 129 EERLYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 188 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + + + IE+WNLVF+Q+++Q LP+ +DTGMG ER+ V+Q K+ Sbjct: 189 D-GSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKS 247 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F+ L ++TG++Y + RVI DH R+ SF ++DG +P+NEGR Sbjct: 248 SNYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGR 307 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ YA+ LGY +P++ L+ + MG +PEL + + +++E+E Sbjct: 308 GYVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEES 367 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + +G++ + + L G+ AFKLYDT+G P D+ + + + GL +D Sbjct: 368 FLVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGL-QVDG 426 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + ++EQ++RAR G E+ + AT+F GYD L Sbjct: 427 EGFERCMQEQKTRARQDRREKQRGGAEEGSWEWFSDLHATEFTGYDGLEAD--------- 477 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I + + + +V D+TPFYAE+GGQ GD G Sbjct: 478 --------------ASIIGISRSKK---------NLLLVLDRTPFYAESGGQTGDRGWIE 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM----------SLVLTIDYQNRRQLSI 585 RL++TD QK + + +E + ++D + R+ Sbjct: 515 TGEYRLEVTDTQKDGDSFVHVVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLRQATER 574 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH L LG+HV Q GS + P+ LRFD +H +T E+ ++E VND I Q Sbjct: 575 NHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVNDCIRQ 634 Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + +DAI GA A G KY D VRVV + S LCGGTHV + G+ Sbjct: 635 AEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIPG-----ISVELCGGTHVDNVGQ 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEI 763 I L IV ESS+ AG+RRIEA+TG+ A + + +L + LK+ +V I Sbjct: 690 IGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAEKVAAI 749 Query: 764 WEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE R L+ A+ K +L + + + ++ ++ D++ L+ L++ Sbjct: 750 LEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAAQMLRQ 809 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + +L S E K S+ ++ + +A L R +A + GGG GG+ A Sbjct: 810 QFPLSAGLLCS-SAEGKVSLAAFASDRAVKELGIDAGKLIRQAAAAVKGGG-GGKAEFAT 867 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N + A ++ Sbjct: 868 AGGKNPEGMEDACRVFREAVR 888 >gi|317968219|ref|ZP_07969609.1| alanyl-tRNA synthetase [Synechococcus sp. CB0205] Length = 878 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 339/907 (37%), Positives = 498/907 (54%), Gaps = 53/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+F+++ GH+ + S+SL+P DPT++ T +GM+PFK +F GQ+ T Sbjct: 7 TGAEIRAAFLDFYEQRGHKPMASASLVPE-DPTVLLTIAGMLPFKPVFLGQQPRPSARAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T F + Sbjct: 66 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTTVFGISP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 122 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 182 L-GDEGIDLEDDSRFIEFYNLVFMQYNRDAEGSLTPLENRNIDTGMGLERMAQILQKVPN 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI+ + + G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 241 NYETDLIYPLIETAAGLAGVDYRQLDPKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P + + A M SAYP+L++ + +I L+ E+ RF Sbjct: 301 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERQEVILSELKREEARFL 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ K ++G+ AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 361 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTQEIAEEHGL-AVDLDGFE 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+E QR RA+A ++ + + I + AT+F GY+LL Sbjct: 418 QAMEAQRQRAKAAAVSIDLTLQDAID-QMAADLEATRFRGYELLDH-------------- 462 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 SS V+A+V GE E A +G V++V D TPFY E GGQ+GD G G Sbjct: 463 ---------SSSVQALVVNGEPAERAEAGDSVQLVLDTTPFYGEGGGQVGDRGVLSG-DG 512 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + + + +FVH VERG + + +D RR+ NH+ATHLL AL Sbjct: 513 LIVVIEAVSRNRSVFVHSGRVERGSVSVGDVVHGQVDRACRRRAQANHTATHLLQSALKQ 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD + IT+AEL+ IE +N IA+ + + M E A Sbjct: 573 VVDPGIGQAGSLVDFDRLRFDFHCPRAITAAELEQIETLINGWIAEAHSLEVQEMTIEKA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY+D V D S LCGGTHVS+T EI L IVSES + AG Sbjct: 633 KAAGAVAMFGEKYSDVV-----RVVDVPGVSMELCGGTHVSNTAEIGLFKIVSESGVAAG 687 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G ++L +D +K L K +V RV + E + Q + Sbjct: 688 IRRIEAVAGAAVLAYLNERDAVVKQLGERFKAQPAEIVERVLTLQSELKASQKALTSARE 747 Query: 780 Q-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 + I D + + V+ L+S L ++ G +++G + Sbjct: 748 ELALAKSAALASQAEAIGDFQVLISRLDGVEGGGLQSAAQGLVDQLGEGAAVVLGGLPDP 807 Query: 834 ---KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++ + ++ + A AK GGGG GGRP++AQ+GG +G D A+ Sbjct: 808 SDLGKVILVAAFGKGVIAKGQQAGKFIGAVAKACGGGG-GGRPNLAQAGGRDGAALDAAL 866 Query: 890 AGVASFL 896 L Sbjct: 867 EQAKGEL 873 >gi|150015988|ref|YP_001308242.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] gi|205830028|sp|A6LSF6|SYA_CLOB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149902453|gb|ABR33286.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] Length = 879 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 324/908 (35%), Positives = 519/908 (57%), Gaps = 48/908 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF+ H + S SL+P ND +L+ N+GM P K FTG ++P + + Sbjct: 4 MKTNDLREAYLKFFESKDHLRMDSFSLVPKNDKSLLLINAGMAPLKPYFTGLQEPPKRRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG T+RH TFFEMLGNFSF YFK+ I AW+ +T+ +L Sbjct: 64 TTCQKCIRTG----DIENVGITSRHGTFFEMLGNFSFADYFKKEIIPWAWEFITEVLELP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F++ E Sbjct: 120 KDRLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFNRSE 178 Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 IP + + ++ IE WNLVF QF+ K L +IDTGMGLER+AT++QE Sbjct: 179 EIPTNADEFVKLADEDKIIEFWNLVFTQFDGDGKGNYEKLANTNIDTGMGLERLATIMQE 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K + ++ID ++++ ++ +KY ++ R+I DH+RS +F+I+D ++P+NEGR Sbjct: 239 KNSIFEIDTLENILSEVAKLANVKYGENQKTDISLRLITDHIRSITFMISDDVMPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG E + +L + + AYPEL K I++ ++ E+++ Sbjct: 299 GYVLRRLLRRAARHGKTLGIKEAFLCNLCDTVIRDSSEAYPELNSKKEYIKKVIKIEEDK 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TLD G+ +L+G +S L +++L+G FKLYDT G P+++ ++IL GL+ +D Sbjct: 359 FRETLDSGMEILNGFISELKAKNEKVLSGVDGFKLYDTFGFPMELTKEILEDEGLS-LDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +F++ ++ QR RAR+ T+ + T F GYD Sbjct: 418 DAFHEEMKVQRERARSARKVSNYMGTDVKTLDIIPAEVETVFDGYDN------------- 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + +++ VK +++ + + G K +V D TP YAE GGQ+GDTG Sbjct: 465 ----------DTLNAEVKVLIEGEDFTDAITEGNKAIIVTDVTPLYAEMGGQIGDTGVIF 514 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG + + D +K G VH V G L+ ++ + +D R + NH+ATHLL Sbjct: 515 NDGFKANVLDTKKNIGGKIVHFVEVVSGELKVGDTVTIEVDKVRRENIKKNHTATHLLDK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL+ +LGSHV Q GS ++ D LRFD +H + +T E+ +ED VN+ I PVVT +M+ Sbjct: 575 ALTEVLGSHVHQAGSYVSNDRLRFDFSHFEAMTEEEINKVEDLVNEAITSVTPVVTEVMD 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SGA + KY D+VRVVS G +S LCGGTH+ +TG+I L I+SES Sbjct: 635 LQEAKNSGAIGIFDDKYADKVRVVS-----AGEYSKELCGGTHIDNTGKIGLFKIISESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG RRIEA+ G+ A + + + LK +++ LK S+ ++ ++++ +E ++ Sbjct: 690 IAAGTRRIEAVIGKEAYKIVNEKKDLLKEISTKLKCSEKELLAKLDQQVKELKEKDKEIT 749 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K + + S + D+N +S+ + +VDS L+ V + ++ K + I++L+ Sbjct: 750 ALKSKFASMGIDDIVSSSRNVKDINVISYELKDVDSDTLRDVCEKVRDKAPNSIVLLMSA 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + T+D + + + L + + +LGGGG GGRP MAQ+GG K +AI Sbjct: 810 NA-GKVIICAMATKDAVAKGAHCGKLIKEISSMLGGGG-GGRPDMAQAGGKMPEKIQEAI 867 Query: 890 AGVASFLK 897 ++ Sbjct: 868 EESYKIVE 875 >gi|325672564|ref|ZP_08152260.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707] gi|325556441|gb|EGD26107.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707] Length = 890 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 321/921 (34%), Positives = 488/921 (52%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+SLI +DP L+F N+GMV FK F GQ+ P Y Sbjct: 1 MQTHEIRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT Sbjct: 60 TSVQKCVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL++TVY +D+EA +WK+ +G+ ++I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGFDPERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RY+EIWNLVFMQ E+ + + LPK +IDTGMG+ Sbjct: 176 YDRGPEY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G Y + V RVI DH R++ LIAD Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RR + A+LLG +P M + + M +YPEL I Sbjct: 295 GVNPGNEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIV 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ F +T+ G + + ++ G+ AF L+DT+G P+D+ ++ Sbjct: 355 GVAVGEETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL+ +D F + EQR RA+ + T+ + GAT+F G++ L Sbjct: 415 EAGLS-VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A++ G V A +GQ VEV+ D++P YAE+GG Sbjct: 473 ----------------------EAHVLALISNGVRVPTATAGQDVEVILDRSPLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G +G+R+++ DVQK A+ ++VH V G + +++ +D + R+ + Sbjct: 511 QIADIGTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQITEGDVVLVQVDPEWRKGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG + Q GS P LRFD ++ ++ + IE N+ +A N Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAAN 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + + + A GA AL G Y D VRVV + GG S LCGGTHV ++ +I Sbjct: 631 HAVNTFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G+RR+EA G + +L + L +AS LKV V GRVE + E Sbjct: 687 PVTLLGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVER 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 + + K + H+ +V ++ V +L+ ++ ++ + Sbjct: 747 LKAAEKELEATKAAAVLASAGTFVDKAHRFGEVLLVAEQAPDGVAGNDLRGLVSDIRGRF 806 Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +++L+G + + K ++ T+ D A +L +GG G GG+ MAQ Sbjct: 807 GTQPAVVVLLG-NADGKVPFVVATTKAAQDLGIKAGELVSSFGPQIGGRG-GGKADMAQG 864 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + + A+ GV + + Sbjct: 865 SGSDVSGIPAALEGVRGRVAE 885 >gi|227510197|ref|ZP_03940246.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190402|gb|EEI70469.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 887 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 496/918 (54%), Gaps = 63/918 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IR FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 8 MKTLSSSQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K Sbjct: 68 PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D+ +LY+TVY +D +A K W + G+S D II I DNFW + + GP GP SEIF Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYW-EAVGVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G P E R++E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++ Q N++ DLF +I+ +E + K + V R+I DH R+ + I D Sbjct: 240 RVVSIFQHAKTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYV+RR++RRA+ + LG + L P + + S YPE+++ + IE Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQRDYIE 359 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE++RF +TL GL LL V++ ++G AFKLYDT+G P ++ ++ Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL G+D F + +Q+ RAR G S ++ L + ++++GYD L Sbjct: 420 EVGL-GVDKQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKDDSEYVGYDTLDVK 476 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV+ ++V E+ + +EV+FD+TPFYAE GG Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513 Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + ++ + A H I + L L +D ++ Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVKGQRYHLVVDKLFHSRVEK 573 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL +L +LG H Q GS + P LRFD H +T +L+ +E VN I + Sbjct: 574 NHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIFK 633 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + + + GA AL KY D+VRVVS+ G S CGGTHV +T +I Sbjct: 634 EIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRDI 688 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSES + AG+RRIEA+T + A L Q +LK ++ LKV+Q +V RVE++ Sbjct: 689 GLFKIVSESGVGAGVRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQLQ 748 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E + L+ + +L + + ++ II + +L+ + D + K Sbjct: 749 DEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRSK 808 Query: 820 IQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G +KA++++ V+++ + D A DL + A + GG GGGRP+MAQ+G Sbjct: 809 RLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQAG 866 Query: 879 GPNGNKADQAIAGVASFL 896 G + + D+A+ +L Sbjct: 867 GKDPSGLDKAMKAAVEWL 884 >gi|254383594|ref|ZP_04998944.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1] gi|194342489|gb|EDX23455.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1] Length = 889 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 326/906 (35%), Positives = 490/906 (54%), Gaps = 62/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP Sbjct: 1 MESAEIRRRWLSFFEERGHAVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGETKPPAPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY +D+EA +W++ G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLEPEKLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + P +IDTG+GL Sbjct: 176 YDRGPDF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG+ Y V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVLYGAAQGTDVSMRVVADHIRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLVDVVINTMGQQYPELVTDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K + G +LD +S +L+GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKAVKGGTNILDTAVSETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + GAT+F GY Sbjct: 415 EQGLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGY----- 468 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T S + ++ G A G +VEVV D+TPFYAE G Sbjct: 469 ------------------ATTQGESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G + + DVQ+ G+ VH V+ G + S ID RR ++ Sbjct: 511 GQLADQGRIKLDSGAVIVVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVSRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +ND+++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V IM+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVTAEIMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RR+EA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIASML 745 Query: 765 EEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQK 818 + + + K + + D+ ++ ++ + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIRGVALVVGSVPDGTGADDLRKLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ ++ L + ++ +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGDRPAVVALFTTANDRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864 Query: 876 QSGGPN 881 Q GG N Sbjct: 865 QGGGQN 870 >gi|254391331|ref|ZP_05006535.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|197705022|gb|EDY50834.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] Length = 869 Score = 755 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 318/891 (35%), Positives = 490/891 (54%), Gaps = 61/891 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP + Sbjct: 1 MMESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLINAGMVPFKPYFLGETKPPFPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT Sbjct: 60 ATSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVED 115 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 + L+ +L+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GGYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEI 175 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMG 229 +D+G + + RY+EIWNLVFMQ+E+ + + P +IDTG+G Sbjct: 176 NYDRGPAFGAEGGPAVNDE-RYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 LER+A +LQ N Y+ D + ++ + ++TG++Y + + V+ RVI DH+R+S LI Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + I Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E +E+ RF KTL+ G +L+G + + +L GD AF L+DT G P+D+ +I Sbjct: 355 EAVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464 +GL+ +D F + ++EQR++A+A + +G + + + + GAT+F GY Sbjct: 415 AEQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGYAATE 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 G S + ++ G A G +VEVV D+TPFYAE Sbjct: 474 G-----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEG 510 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + G +++ DVQ+ G+ VH V+ G + S ID + RR + Sbjct: 511 GGQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAI 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + HSATHL H AL LG +Q GS +P RFD + + L +E +N+++ Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVL 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++ L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T Sbjct: 631 SRELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTA 685 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ L+ ++ ESSI +G+RRIEA+ G A + L + + L +K + ++ + Sbjct: 686 QLGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISGM 745 Query: 764 WEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817 + + + K + + I V +S + + + +L+ ++ ++ Sbjct: 746 LAKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRRLVLDVR 805 Query: 818 KKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 +I ++ L ++ + +V+ A DL R +AK LGG Sbjct: 806 GRIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLRAGDLVRTAAKTLGG 856 >gi|189485045|ref|YP_001955986.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|205830280|sp|B1GZ43|SYA_UNCTG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170287004|dbj|BAG13525.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 877 Score = 755 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 336/904 (37%), Positives = 501/904 (55%), Gaps = 44/904 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL FF+ +G ++PS SLIP D TL+FT++GMV FK F GQ K + T+ Sbjct: 5 SSKIRAEFLGFFKNSGCAVVPSDSLIPAGDKTLLFTSAGMVQFKQHFLGQSKDSFTRATS 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC R D+D VG T RH TFFEMLGNFSFG YFK+ A AW+ LTK L + Sbjct: 65 CQKCFRTS----DIDQVGTTARHLTFFEMLGNFSFGDYFKKEAAAWAWEFLTKNMSLPKD 120 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LYIT+Y +D+E +WK I+ A+KII++ NFW+M ETGPCGPCSEI D G+ Sbjct: 121 KLYITIYKDDDEVAGIWKNIA--PANKIIKMDEKTNFWNMGETGPCGPCSEILIDLGQET 178 Query: 184 PGGLPGSSEEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+EIWNLVF QF++Q LP+ +IDTGMGLER++ + + Sbjct: 179 GCGSPACCPECNCDRYLEIWNLVFTQFDKQPDGSLKNLPRKNIDTGMGLERLSATVNGRK 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 N +D DLF +++ + ++ +K EG+NI R+I DH R+ +FLI+DGILP+NEGRGYVL Sbjct: 239 NVFDTDLFMPVMENAAEILKIKNEGSNISKLRMIADHSRAITFLISDGILPSNEGRGYVL 298 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + GY +P + L+ + M AYPEL I +++E+E+F +T Sbjct: 299 RRILRRALRQGKFYGYNKPYINELVSDVLKIMEGAYPELSSKLSNIRSIVKTEEEKFLET 358 Query: 362 LDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+ G +L +++ I++G FKLYDT+G P D+ +++ GL ID F Sbjct: 359 LESGSEILSSLINSYKSKDINIISGKDVFKLYDTYGFPHDLTKEMAFENGLE-IDEDKFK 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ + ++R G G + L++K G T F GYD Sbjct: 418 FEQKKAQEKSRVAWCGSGERDI-TFYSILRKKTGDTVFTGYDNYAS-------------- 462 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V A+++ G + E +G E++ + FYA++GGQ D G + Sbjct: 463 ---------ESRVLALIKDGSEISELKTGDNGEIILSHSSFYAQSGGQSDDKGKIANNSF 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + K A +FVH V +G+++ ++ ID + R+Q++ +H+A HLLH AL Sbjct: 514 ESIVEYIFKPAGNLFVHKVKVLKGLIKINDAVSTIIDIERRKQIARHHTAAHLLHKALRE 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 G H++Q GS + D RFD TH + +L IE VN II N V M A Sbjct: 574 AFGGHITQAGSLVARDYFRFDFTHFSALKKDDLIKIEKRVNSIIRLNSEVCIETMAIAKA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 +GA AL G KY D VR V ++ E G G +S LCGGTHVS TG+I + I+SESS A Sbjct: 634 RNAGAMALFGEKYGDEVRTVLIKNESGDGNYSMELCGGTHVSRTGDIGIFKIISESSAAA 693 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ G A ++++ ++ + + L S+ +V + + +Y+KL+ K Sbjct: 694 GVRRIEAVAGIAAENYILDEEAVIIKTSKILNASKEELVNKAHKYTSDYKKLENEFKSLK 753 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L ++ KI +NF+S I + D K L+++ D L++K++S ++L+ E Sbjct: 754 SSLISGEIDSYAKEVKKINGINFLSVIADKADIKALRTISDQLKEKLKSA-VLLIVSKNE 812 Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +AS ++ T D + NA +A+ A + G GG+P AQ G + + + A+ Sbjct: 813 DRASFILSATADCVQKGINAGKIAKAFAASIN-GSAGGKPDFAQGGSKDLSNLNDAVKNA 871 Query: 893 ASFL 896 ++ Sbjct: 872 HKYI 875 >gi|258645603|ref|ZP_05733072.1| alanine--tRNA ligase [Dialister invisus DSM 15470] gi|260402961|gb|EEW96508.1| alanine--tRNA ligase [Dialister invisus DSM 15470] Length = 868 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 329/908 (36%), Positives = 496/908 (54%), Gaps = 55/908 (6%) Query: 2 SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + IR +L FF+ K H L S LIP +DP+L+ +GM P K FTG+ +P Sbjct: 1 MKGNDIREAYLSFFETKKEHLRLKSFPLIPKDDPSLLLIGAGMAPLKPYFTGKVEPPCHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R G D++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ L Sbjct: 61 VTTSQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWEFLTEVIKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY+T+Y +D E++ W + GL I ++ DNFW + E GPCGP SEIF+DQG Sbjct: 117 ESSRLYVTIYPDDRESYDYWHDMIGLPESHIYPLS--DNFWEIGE-GPCGPDSEIFYDQG 173 Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E +G+R++EIWNLVF QF+QQ L K +IDTG GLER++ VLQ+ Sbjct: 174 EEFGTDPENQMGGDGDRFLEIWNLVFSQFDQQKDGSYRPLDKKNIDTGAGLERLSAVLQK 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K NN++ DLF +IQ + + G+ Y + V +VI DH R+ + +IADGILP+NEGR Sbjct: 234 KKNNFETDLFFPIIQEAAGLAGVPYGRSTESDVALKVISDHTRAITNMIADGILPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ Y +L+G + + ++ + M AYPEL++ + I++ E+ R Sbjct: 294 GYVLRRVLRRAVRYGKLIGIDDAFLGRMIDVVVKMMKPAYPELMEKQAFIKKVAGVEENR 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL+ G+ LL +L + IL GD FKLYDT+G P ++ ++I +G ID Sbjct: 354 FHATLNAGMDLLAEMLEETLKKQRRILTGDRVFKLYDTYGFPWELTEEIAKEQG-IEIDK 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A+ EQ+ RARA + + LK + T+ Sbjct: 413 DGFAAAMAEQKERARAARTKVSARIATPDTTKLKSESMTTE------------------- 453 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + + + G+ V+ A G+ + V+ PF+AE GGQ+GD+G Sbjct: 454 ---------DTDGDTEILLLGKDGQAVQSAADGENITVILKNNPFHAEGGGQIGDSGVLE 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+ + I D +K +GI V G++ T ++ +D + R ++ NH+ THLL Sbjct: 505 GNSGIISIEDTKKLPDGIVYCIGTVTEGVISTGETVKTVVDRERREDIARNHTGTHLLQA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LGS V+Q GS + P+ LRFD T + +T ++ +E VN+ I ++ + M Sbjct: 565 ALRRVLGSQVNQAGSLVLPEKLRFDFTWPEAVTDKQIAEVERIVNEQIWKSTTLDIDEMP 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A GA AL G KY + VRVV V S+ LCGG+HV +TGEI I+SES Sbjct: 625 IAKAKEMGAIALFGEKYGNIVRVVRVP-----DFSTELCGGSHVFNTGEIGCFRIISESG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +GIRRIEAITG+ A ++ + L+ A+ LKV + G++E+ ++ + Sbjct: 680 IGSGIRRIEAITGKAAYESMLADRKLLRESAALLKVKVEEIPGKIEKNLAALKEAEREIE 739 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K Q + L + + ++F I+ + EL+ D ++ K G +L Sbjct: 740 RFKNQQTKDALGNLLKNVREKNGISFFGAIVPAANMDELRKAADIVKGKFPRGAFILGAA 799 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + E K +++ + +E+ + + + +AK+ GGGG GG+P +AQ+GG N ++ AI Sbjct: 800 AGE-KVNLVGMASEEAVKTGIHMGKVVSAAAKICGGGG-GGKPAVAQAGGKNISELQNAI 857 Query: 890 AGVASFLK 897 ++ Sbjct: 858 DEGVRIIE 865 >gi|149277763|ref|ZP_01883903.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp. BAL39] gi|149231451|gb|EDM36830.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp. BAL39] Length = 900 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 309/943 (32%), Positives = 487/943 (51%), Gaps = 93/943 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +L+FF+ H ++PS+ ++ NDPTLMFTN+GM FK++F G+ Y + Sbjct: 1 MTAKEIRQAYLKFFESKQHHIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAAIKYPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT+ + + Sbjct: 61 TDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYRIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + +LY+++++ DEEA++LWK+ + ++II DNFW M +TGPCGPCS Sbjct: 121 KDKLYVSIFEGDEKEGLPRDEEAYELWKQF--VPEERIILGNKKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + IEIWN VFMQF + LP +DTGMG Sbjct: 179 EIHVDCRPDDERATVAGKSLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ VLQEK +NYD D+F+ LIQ G+ Y + + RV+ DH+R+ SF+IA Sbjct: 239 FERLVRVLQEKPSNYDTDVFQPLIQFIASHAGVVYGADEKTDIAMRVMADHIRAISFVIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L EP + L+P L + + EL+ K Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLNQLVPVLADQFSGVFDELVLQKDF 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH-------------------------LGKDEI 381 +++ + E+ F +TL G+ + L + Sbjct: 359 VQKVVMEEEVSFLRTLATGIQRFENYTKKQADFLMSENAIDTEKPFEHPWVYSILKDQMV 418 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 ++GD AF+L DT+G P+D+ + + + ID+ +N AL +Q+ R+RA Sbjct: 419 ISGDFAFELNDTYGFPIDLTELMAREKNW-VIDMKEYNTALLKQKERSRAA------TAI 471 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + + + ++F+GYD + + RKV Sbjct: 472 DTGDWIVVHGDLDSEFVGYDDFETETQVIKYRKV-------------------------- 505 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 A ++ ++V +TPFYAE+GGQ+GDTG + K E + H + Sbjct: 506 --NAKGREQYQIVLSKTPFYAESGGQVGDTGRLEDHSRLFSVEVTDTKKENGVIVH-YTD 562 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 + + ID R NH+ATHLLH AL +LG+HV+Q GS + P+ LRFD Sbjct: 563 TLPEDLDGTFWAVIDEDKRLLSQDNHTATHLLHAALKKVLGTHVNQKGSLVNPEYLRFDF 622 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVS 680 +H I+ +L +IE VN + +N+P+ R + + AI+SG AL G KY + VRV++ Sbjct: 623 SHFAKISEEDLAAIEHLVNQKVRENIPLKEQRDVPYDQAISSGVTALFGEKYGELVRVIT 682 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + +S LCGGTHV +TG+I I+SES++ AG+RRIEAIT +A + ++ Q+ Sbjct: 683 FDDH----YSKELCGGTHVQATGQIGYFKIISESAVAAGVRRIEAITADKAEAFILDQNR 738 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVN 795 +L L + LK + ++ V + EE +L+ K L + + + + +N Sbjct: 739 ELNELKALLKGN-KDLKAAVSGLLEENARLKKEAEKAMLAQSADLKNEVIKLAKDVNGMN 797 Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAV 853 F++ + +K++ ++ + S + ++ + K + +++TE+L+ NA Sbjct: 798 FIATHVVLNSMDAVKNLAFEVKD-LVSNLFLVFTTLIDDKPGITVMLTENLVKERGLNAS 856 Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ R AK + GG GGG+P A +GG N + + + Sbjct: 857 NIVRELAKEIQGG-GGGQPFYATAGGKNKDGLAVVLQKAEDIV 898 >gi|300814156|ref|ZP_07094439.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511813|gb|EFK39030.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 874 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 333/908 (36%), Positives = 512/908 (56%), Gaps = 50/908 (5%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ IR FL FF+K GH++LPS SLIP ND +L+ +GM P K FTG+ P Sbjct: 5 MKNLGLHEIRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPG 64 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D+DNVG+T+RH TFFEMLGNFSFG YFK+ I A++ LT Sbjct: 65 KRVTTCQKCIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++++ L++TVY +D+EAF +WK G++ D+IIR+ DNFW + E GP GPC+EI+ D Sbjct: 121 EINKDDLWVTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVD 179 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +G EG+R+IE+WNLVF QF++ K L +IDTGMGLER+ATVLQ Sbjct: 180 RGLKYGSIDERPGGEGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 N ++ID +I E+++G KY + V+ RVI DH+R+ +FL+ D + P+NEG Sbjct: 240 GTNNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEG 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RLLG + + L + G Y EL++ I++ ++ E+E Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKKTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F T++ G+ +LD + L ++IL+G+ +FKLYDT+G P D+ ++IL +G +D Sbjct: 360 KFQMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + FN +++Q+ RAR G S+ K+ +F+GY+ Sbjct: 419 MDGFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKF-KNEFVGYEE------------ 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + + I + V+ +K ++ D+TPFY E GGQ+GDTG Sbjct: 466 -----------DKCQANIIGIFKDYTEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTGYI 514 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GD + ++ D +K EG+ +H V G + ID R + NHS THLLH Sbjct: 515 DGDDFKCRVIDTKKTREGLHLHIVEVLDGEVTKGPCF-AEIDVVRRNNIRRNHSVTHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG HV+Q GS + D LRFD TH + ++ E+K +E+ VN I + L V T + Sbjct: 574 KALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEERVNQKIFEALSVTTTVT 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N + A GA L KY D VRV+S+ G +S LCGGTHV +T EI + I+SES Sbjct: 634 NPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILSES 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIE +TG L +A LK ++ +++ ++ E +KL Sbjct: 689 GVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKISSSLNEIKKLNKAI 748 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K + ++LS + +N+++H + D L+ + D ++ K+ S +++L+ Sbjct: 749 DSLKHSSDKDELSNILDEVKEKNGINYLTHKFKDKDVNSLRDIADMVRNKLNS-VVVLLA 807 Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + +++DL+ + ++A + + +KV GGGG GGR MA +GG + K +A Sbjct: 808 TENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVCGGGG-GGRADMATAGGRDLGKVSEA 866 Query: 889 IAGVASFL 896 + + + Sbjct: 867 LKTLEGLI 874 >gi|325298627|ref|YP_004258544.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] gi|324318180|gb|ADY36071.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] Length = 872 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 324/919 (35%), Positives = 487/919 (52%), Gaps = 74/919 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ I AW+ L + Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D LY TV++ D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 DPSILYATVFEGSPEEGLERDNEAAGYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ K +NYD D+F+ +I+ +TG+ Y + V RV+ DH+R+ +F I Sbjct: 239 GFERLCMALQGKKSNYDTDVFQPIIKVIGDLTGLTYGKDPKVDVAMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M L+P L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMFKLVPVLIENMGQAYPELKAQQP 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD V+ + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKVMNDAKAAQKTEISGVDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ ++ FN +++Q+ RAR + W L+E G T F+GYD Sbjct: 419 ILRENGMT-VNEEEFNIEMQKQKQRARNA-----AAIETGDWVILEE--GETHFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V +TPFYAE Sbjct: 471 EYETRILRYRQIKQKNQTL----------------------------YQIVLSETPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + ++I D +K+ ++ + ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEIIDTKKENNLPIHI---AKQLPEHLDAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQLREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHVS+T Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SESS+ AG+RRIEAITG + + + + L + + ++ + + Sbjct: 674 GKIGMVKILSESSVAAGVRRIEAITGAKVEEMMDILQDTINDLKALFNNAP-DLRAAISK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E L+ K + L S +I V + ++ + + +K++ L+ Sbjct: 733 YVDENAGLKKQMEEFMKEREASAKARLIESAKEIHGVKVIKAMLP-MRPEAIKNIAFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + +++G + K + +++++D + NA L R +AK++ GG GGG+PH A Sbjct: 792 GQFPENLFVVIGSIFDDKPMLTVIMSDDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + AI V Sbjct: 851 AGGKNADGLSAAIDKVLEL 869 >gi|148243479|ref|YP_001228636.1| alanyl-tRNA synthetase [Synechococcus sp. RCC307] gi|147851789|emb|CAK29283.1| Alanyl-tRNA synthetase [Synechococcus sp. RCC307] Length = 915 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 334/907 (36%), Positives = 502/907 (55%), Gaps = 53/907 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FLEF++ GH+ +PS+SLIP DPT++ T +GM+PFK +F GQ++ T+ Sbjct: 45 AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRATSS 103 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + Sbjct: 104 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 159 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 160 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL- 218 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ NNY Sbjct: 219 GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNNY 278 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LI+ + + G+ Y + + +VI DH R+ + LI DG+ +N GRGY+L Sbjct: 279 ETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 338 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG ++P ++ + A M +AYP+L + + LI L+ E+ RF +T Sbjct: 339 RRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLET 398 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL VL+ K ++G+ AF+LYDT+G PL++ ++I GL+ +D+ F A Sbjct: 399 LERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEAA 455 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +E QR RA+A ++ + T + + AT F GY+ L Sbjct: 456 MEAQRQRAKAAAVSIDL-TLQGAIEQMAADLEATAFRGYEALEHP--------------- 499 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S V A+V GE + A +G V++V D TPFY E GGQ+GD G G + Sbjct: 500 --------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQD-LI 550 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + + + VHH +ERG L + +D RR+ +H+ATHLL AL ++ Sbjct: 551 VSIESVNRQRDVSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAALKQVV 610 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 S +SQ GS + D LRFD + +T AEL+ +E +N I + + + M E A A Sbjct: 611 DSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIEAAKA 670 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA A+ G KY D V D S LCGGTHV++T EI L IVSE+ + +GIR Sbjct: 671 AGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSEAGVASGIR 725 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G ++L +D +K L+ KV + RV + EE + A + +L Sbjct: 726 RIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAARSEL 785 Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--- 833 I + + + VD L+S L ++ G +++G + Sbjct: 786 AVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLPDPSD 845 Query: 834 -KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K ++ + ++ + A AK+ GGGG GGRP++AQ+GG +G D A+ Sbjct: 846 LGKVILVAAFGKAVVAKGQKAGQFIGGVAKLCGGGG-GGRPNLAQAGGRDGAALDGALEQ 904 Query: 892 VASFLKK 898 S L++ Sbjct: 905 AKSSLQQ 911 >gi|205830240|sp|A5GWM4|SYA_SYNR3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 882 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 334/907 (36%), Positives = 502/907 (55%), Gaps = 53/907 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FLEF++ GH+ +PS+SLIP DPT++ T +GM+PFK +F GQ++ T+ Sbjct: 12 AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRATSS 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + Sbjct: 71 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 126 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 127 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL- 185 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ NNY Sbjct: 186 GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNNY 245 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LI+ + + G+ Y + + +VI DH R+ + LI DG+ +N GRGY+L Sbjct: 246 ETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 305 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG ++P ++ + A M +AYP+L + + LI L+ E+ RF +T Sbjct: 306 RRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLET 365 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL VL+ K ++G+ AF+LYDT+G PL++ ++I GL+ +D+ F A Sbjct: 366 LERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEAA 422 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +E QR RA+A ++ + T + + AT F GY+ L Sbjct: 423 MEAQRQRAKAAAVSIDL-TLQGAIEQMAADLEATAFRGYEALEHP--------------- 466 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S V A+V GE + A +G V++V D TPFY E GGQ+GD G G + Sbjct: 467 --------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQD-LI 517 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + + + VHH +ERG L + +D RR+ +H+ATHLL AL ++ Sbjct: 518 VSIESVNRQRDVSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAALKQVV 577 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 S +SQ GS + D LRFD + +T AEL+ +E +N I + + + M E A A Sbjct: 578 DSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIEAAKA 637 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA A+ G KY D V D S LCGGTHV++T EI L IVSE+ + +GIR Sbjct: 638 AGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSEAGVASGIR 692 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G ++L +D +K L+ KV + RV + EE + A + +L Sbjct: 693 RIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAARSEL 752 Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--- 833 I + + + VD L+S L ++ G +++G + Sbjct: 753 AVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLPDPSD 812 Query: 834 -KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K ++ + ++ + A AK+ GGGG GGRP++AQ+GG +G D A+ Sbjct: 813 LGKVILVAAFGKAVVAKGQKAGQFIGGVAKLCGGGG-GGRPNLAQAGGRDGAALDGALEQ 871 Query: 892 VASFLKK 898 S L++ Sbjct: 872 AKSSLQQ 878 >gi|296271979|ref|YP_003654610.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299] gi|296096154|gb|ADG92104.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299] Length = 850 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 338/895 (37%), Positives = 505/895 (56%), Gaps = 50/895 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-VTTV 64 IR +L+FF+ GHE++ S L+P +DPTL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRKEYLDFFKNKGHEVISSMPLVP-DDPTLLFTNAGMVQFKDIFTGAIPAPKNPTATSC 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +T L + Sbjct: 61 QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFITVNLALPIDK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 L++T+++ D+EAF +WKK + +I R DNFW+M +TGPCGPCSEIF+DQG E Sbjct: 121 LWVTIHESDDEAFNIWKKY--IEPSRIKRFGDKDNFWAMGDTGPCGPCSEIFYDQGVENF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 EG+R++EIWNLVFMQ+EQ + R LPK SIDTGMGLER+ + + NN Sbjct: 179 GSDEDYLGGEGDRFLEIWNLVFMQYEQ-SNGVRTPLPKPSIDTGMGLERVIAIKEGVLNN 237 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D FK L+ ++ + I ++RVI DHLR+ SF+++ GIL NEGR YV RR Sbjct: 238 FDSSNFKPLVNEVAKLAKKQPTKETIGSYRVIADHLRAVSFMLSQGILFGNEGRPYVNRR 297 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ E M L+ L MG Y +L + I+E + E+ERF KT+ Sbjct: 298 ILRRAVRHGYLLGFREAFMSKLVDVLIKIMGEHYTDLKEQASFIKEQIMLEEERFFKTIA 357 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L + ++ +G+VAFKLYDT+G PLD+ +D+L + L +DI +F++ + Sbjct: 358 SGMTLFNEEL--INTKKLFSGEVAFKLYDTYGFPLDLTEDMLREKDLK-VDIETFDKLMN 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 Q+++A+A G G +E + L EKYG +F+GY+ Sbjct: 415 AQKAKAKAAWKGSGDEASEGDFKVLLEKYGVNEFVGYENTSYK----------------- 457 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S+IV + ++ V+ GQ ++ D+TPFYA +GGQ GD G + I Sbjct: 458 -----STIVTLLDEKFNEVDSLEKGQTGWIMLDKTPFYATSGGQSGDIGALEDKQH-IAI 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 + K GI + VE L + + NR +++ +HSATHLL AL +LG Sbjct: 512 IEETSKFHGINLSKIKVETSSLEKGEVVNAVVV--NRYEIAKHHSATHLLQSALKMVLGD 569 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 VSQ GS LRFD T+ K +T+ +++ ++D VN +I + L + E+A G Sbjct: 570 TVSQAGSLNNSSRLRFDFTYPKAMTNEQIEEVQDLVNSMITRGLKGSVEELPIEEAKQRG 629 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A A+ G KY D VRVV+ G S CGGTHV +T +I YI+ ES + AG+RRI Sbjct: 630 AIAMFGEKYGDMVRVVNF-----GDVSVEFCGGTHVRNTLDIGSFYILKESGVSAGVRRI 684 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G A + K+ + S +K +V+ ++++ E+ + L+ + + Sbjct: 685 EAVCGSAAIKYTNSIISKMNEIESEIK--NVDVISGIKKLKEQIKTLKQEVIEAQSASTT 742 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++ I D + I+ D +K ++D + + I+L+ +K+ K ++ + Sbjct: 743 P-IAEEMIGDTKVIVDIVKNGD---IKKIVDDAKNGNEKVAILLI-QAKDDKVMLVAG-S 796 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 ++ A + + A ++GGGG GGRP AQ+GG + +K D+A A ++ K+ Sbjct: 797 KNT--NIKAGNWIKEIAPIVGGGG-GGRPDFAQAGGKDVSKVDEAKAKALTYAKE 848 >gi|42518570|ref|NP_964500.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] gi|48428507|sp|P61702|SYA_LACJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|41582855|gb|AAS08466.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] Length = 882 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF QF + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I+ +E+++ KY + V ++I DH+R+ SF IAD Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I+ Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E+ERF TL GL LLD +++ D+ ++G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL ID F++ ++ Q+ RAR L S ++ + +L ++F Y L Sbjct: 414 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H + L VL +D + RR L Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ I + Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + + + GA AL G KY D VRVV + S+ CGGTH +T +I Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES++ AG RRI A+TG A ++ +DE LK + +K +VV ++ I Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R Q + K Q+N ++ D+ ++ +L+ + D + Sbjct: 742 DDLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSS 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L KA+++I + + + A DL + +A + GGGG GGRP+MAQ+G Sbjct: 802 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N AIA V +++ Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879 >gi|300934543|ref|ZP_07149799.1| alanyl-tRNA synthetase [Corynebacterium resistens DSM 45100] Length = 887 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 320/919 (34%), Positives = 484/919 (52%), Gaps = 58/919 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F++ F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MQTHEIRERFIKHFTNAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFATA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LL Sbjct: 60 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIKHAWALLINSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI+ Sbjct: 116 GFGLDPDRLWVTVYTDDDEAAEIWEKKVGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + RYIEIWNLVFM+ E+ N + LPK +IDTGMG+ Sbjct: 176 YDRGPE-HGKEGGPIVDDTRYIEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ+ N Y+ DL + +I +E++TG Y N+ N RVI DH R+ L+ D Sbjct: 235 ERVACILQDVENVYETDLLRPVIDEAERLTGATYGDNHTDNVRFRVIADHCRTGLMLMLD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + ARLLG T M L+ + M +YPE+ I Sbjct: 295 GVTPGNEGRGYILRRLLRRIIRSARLLGATGTTMERLMDTVRQTMTPSYPEIADNWERIR 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E++ F KTL+ G L + + +++G AF L+DTHG P D+ ++ Sbjct: 355 SVAVGEEKAFLKTLESGSQLFENAAAQAKSEGKSVVDGATAFSLHDTHGFPFDLTVEMAN 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G+ +D F++ + EQ++RA+A + G ++ + T F GY + Sbjct: 415 EAGMT-VDEAGFHELMAEQKARAKADNNAKKMGHADQTIYRPFVDNHPTAFTGYTHIED- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V I+++G++V+ +G + +++ D+TPFYAEAGG Sbjct: 473 ----------------------ESAVLGIIKEGQLVDRVAAGDQAQIIVDRTPFYAEAGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G+ +TDVQK + ++VH A V G L L ++D R Q Sbjct: 511 QMADRGTFRGESGAADVTDVQKVGKKVWVHFATVTGGELAVGQKLTASVDDAWRHQARQA 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS THL+H AL +LG Q GS P LRFD + +T+ +L IED N + + Sbjct: 571 HSGTHLIHAALRDVLGPTAVQAGSMNRPGYLRFDFQYGDQLTAEQLSRIEDIANAAVDSD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + E+A A GA AL G Y D VRVV + GG S LCGG HV + +I Sbjct: 631 YKVNTIETSLEEARAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGIHVEHSSQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G+RRIEA TG + L G + LA+ LK + R++ + + Sbjct: 687 PIAVLGESSVGSGVRRIEAYTGMDSFRFLSGGKNVVADLAANLKTPSEELPERIDALTAK 746 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 + + + + Q + I + ++ + V + +++++ + + Sbjct: 747 LKAAEKQIQQMRNQQLLAGVGDLVAKAETIGGIKVVAVQLPEGVSAGDVRTMATDAKARF 806 Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S ++ S + K + VT+ +D+ A +L + + +GG G GG+P MAQ Sbjct: 807 GSDAAVVFFTASDDGKVPFVAAVTDAAVDKGLKAGELVKTFGEKVGGRG-GGKPAMAQGS 865 Query: 879 GPNGNKADQAIAGVASFLK 897 G + + V + ++ Sbjct: 866 GSDPAGIAAGLEAVKAMVE 884 >gi|159902592|ref|YP_001549936.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211] gi|205830180|sp|A9B9E5|SYA_PROM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|159887768|gb|ABX07982.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211] Length = 890 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 336/909 (36%), Positives = 514/909 (56%), Gaps = 54/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IRT FL FF + GH++LPS+SL+P +DPT++ T +GM+PFK +F G E+ V Sbjct: 16 TGEEIRTAFLHFFAERGHQVLPSASLVP-DDPTVLLTIAGMLPFKPVFLGHEERPSSRVV 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RH T+FEMLGNFSFG YFK+ AIQ AW+L TK F LD Sbjct: 75 TSQKCIRT----NDIENVGRTARHQTYFEMLGNFSFGDYFKKEAIQWAWELSTKTFGLDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++++ ED++A+++W+ I G++ D+IIR+ DNFWS TGPCGPCSE+++D Sbjct: 131 KYLVVSIFREDDDAYEIWRNIIGVNPDRIIRMDEADNFWSSGPTGPCGPCSELYYDFNPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFM+F + + L +IDTGMGLERMA +LQ+ N Sbjct: 191 L-GNHCIDLEDDTRFIEFYNLVFMEFNRDSTGRLSSLSNCNIDTGMGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL L++ + G+ Y+ + +++VI DH+R+ LI+DG+ +N GRGY Sbjct: 250 NYETDLIYPLLEKVAYLVGVDYQKTDKKTRISYKVIGDHIRACVQLISDGVSASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ L + M S YP+L++ + +I + L+ E+ RF Sbjct: 310 ILRRLLRRIVRHGRLLGIPKPFLIDLGEVAISLMKSTYPQLLERRDVILKELQREELRFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL +LS+ K+ ++G+ AF+LYDT+G PL++ Q+I +D+ +F Sbjct: 370 ETLERGERLLADLLSNNPKE--ISGEQAFELYDTYGFPLELTQEIAEE-NSIEVDLKAFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ QR RA+A S + + + +++E T F GY+ L Sbjct: 427 KAMQRQRIRAKAASTTIDLTLQDTLDKAVRE-LKPTNFKGYECL---------------- 469 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGD 537 +S V+AI GE+ +EA ++V D TPFY E+GGQ+GDTG Sbjct: 470 -------TETSTVQAIFINGELAQEAQENDVIQVALDITPFYGESGGQIGDTGILFKESV 522 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L D + +FVH IV+ G L+ + + + NRR+ INH+ATHLL +L Sbjct: 523 TNCLIEIDSVIRNNDVFVHRGIVKNGRLQVGDIIQSQVHHINRRRAQINHTATHLLQASL 582 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+GS +SQ GS ++ + LRFD S P++S EL+ +E +N I+++ +V + M + Sbjct: 583 KEIVGSEISQAGSLVSFERLRFDFHCSSPVSSEELEKVEKKINLWISESHSLVVKEMKID 642 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA +GA A+ G KY VRVV V S LCGGTHV++T +I IV ES I Sbjct: 643 DAKQAGAVAMFGEKYGTLVRVVDVPG-----VSMELCGGTHVANTADIGAFKIVGESGIA 697 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRRIEA+ G + +D ++ L+ KV +V RV + +E + L K Sbjct: 698 AGIRRIEAVAGPGVFDYFNARDSVVRILSERFKVQSNEIVDRVIALQDEVKLLGKSLIKA 757 Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-- 830 + ++ I +++ H + V S+ L+S L ++ +L+ Sbjct: 758 QEEIAFAKTSALVSKATAIKSSHYIIHRLDGVPSEALQSAAKVLVDQLGDCSAVLLAGTP 817 Query: 831 --SKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S K ++ + + +A AK+ GGGG GGRP+ AQ+GG + D+ Sbjct: 818 TQSDPNKVILVAAFGAKTVAHGLHAGKFLGPIAKMCGGGG-GGRPNFAQAGGRDAKPLDK 876 Query: 888 AIAGVASFL 896 A+ L Sbjct: 877 ALDLAREQL 885 >gi|226366325|ref|YP_002784108.1| alanyl-tRNA synthetase [Rhodococcus opacus B4] gi|226244815|dbj|BAH55163.1| alanyl-tRNA synthetase [Rhodococcus opacus B4] Length = 890 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 323/919 (35%), Positives = 484/919 (52%), Gaps = 60/919 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K H +PS+SLI +DP L+F N+GMV F F GQ+ P Y Sbjct: 1 MQTHEIRRRFLDHFVKAAHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT Sbjct: 60 TSVQKCVRTL----DIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D R+++TVY +D+EA +W+ G+ +I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGFDPERIWVTVYLDDDEARDIWRDEVGVPETRIQRRGMADNYWSMGIPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 FD+G G G + +RYIEIWNLVFMQ E+ N + LPK +IDTGMG+ Sbjct: 176 FDRGPEF-GAEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G KY + ++ V RVI DH R+++ LIAD Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVIAKAEELSGRKYGVDHDDDVRFRVIADHARTAAMLIAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N+GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ F KTL G L +G + G+ AF L+DT+G P+D+ ++ Sbjct: 355 TVAVGEEAAFLKTLTSGSKLFEGAAESVKASGKSTIGGEQAFALHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + EQR RA+ + + + G T+F G+ L Sbjct: 415 EAGLT-VDEEGFRALMAEQRQRAKDDAQARKHAHADLTIYKELLDRGPTEFTGFHELVS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A++ QG+ V A +GQ VEV+ D++P YAEAGG Sbjct: 473 ----------------------EAHVLALISQGQRVPVATAGQDVEVILDRSPLYAEAGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G G+R+++ DVQK A+ ++VH V+ G + ++ +D R+ + Sbjct: 511 QIADLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQDGQITEGDVVLAQVDAAWRKGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG + Q GS P LRFD + +T A+ + IE N+ +A + Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAAD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + + + A + GA AL G Y D VRVV + GG S LCGGTHV S+ +I Sbjct: 631 YSVNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ E S+ +G+RR+EA G + +L + L L+S LKV V RVE + E Sbjct: 687 NVTLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI 820 R + + + Q + ++ V ++ V +L+ ++ ++ + Sbjct: 747 LRVAEKELEQTRAQAVLASAGTFVDKAERVGPVLLVADSAPAGVGGNDLRGLVTDIRGRF 806 Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +++L+G + K ++ V++ + +A DL + +GG G GG+ MAQ Sbjct: 807 GTQPAVVVLLG-DVDGKVPFVVAVSKAAQELGLSAGDLVKEFGPKIGGRG-GGKADMAQG 864 Query: 878 GGPNGNKADQAIAGVASFL 896 G + + A+ V + Sbjct: 865 SGSDTSGIAAALGAVRGQV 883 >gi|260578810|ref|ZP_05846717.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734] gi|258603108|gb|EEW16378.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734] Length = 887 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 323/921 (35%), Positives = 477/921 (51%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F+E F K GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ Sbjct: 1 MQTHEIRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTDPVE 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 LD RL++TV+ +D+EA ++W K G+ KI R+ DN+WSM GPCGPCSE Sbjct: 116 EGGLGLDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGM 228 I++D+G G G + RYIEIWNLVFM+ E+ K I+ PK +IDTG+ Sbjct: 176 IYYDRGPE-HGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G+ER+A +LQ+ N Y+ DL + +I +++VTG KY + N V RVI DH R+ L+ Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLMLM 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + ARLLG T + + + M +YPE+ + Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E++ F KTL+ G + D + ++ + GDVAF L+DTHG P+D+ Q++ Sbjct: 355 IRAVALAEEKSFLKTLESGSQMFDNWAHGAKERGEDTVPGDVAFSLHDTHGFPIDLTQEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL F+ + EQ++RA+A + G ++ + T F GY+ L Sbjct: 415 AAEAGLKVEI-DGFHDLMAEQKARAKADNNAKKLGHVDQTIYRPFVDNQPTVFTGYENLA 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 V I++ G +VE A G V+V+ D+TPFYAEA Sbjct: 474 D-----------------------EGSVLGIIRDGALVETASEGAAVQVILDRTPFYAEA 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G ++ DVQK + ++VHH V G L + T+D R Q Sbjct: 511 GGQMADRGEMTTTSGSARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS THL+H AL +LG Q GS P LRFD + + +T +L IE+ N + Sbjct: 571 QAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTENQLNQIEEIANGAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E+A A GA AL G Y VRVV + GG S LCGG HV + + Sbjct: 631 SDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + + ++ ESS+ +G+RRIEA TG + L + + LA+ LK + R++ + Sbjct: 687 VGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVAGLATSLKTPSEELPERIDALT 746 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + + + Q + I +V ++ + V + +L+++ + Sbjct: 747 AKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAERLPEGVAAGDLRTLAMDAKN 806 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ S +++ + EK V + A +L + + + G GGG+P MAQ Sbjct: 807 RLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKAFGEKVS-GRGGGKPAMAQ 865 Query: 877 SGGPNGNKADQAIAGVASFLK 897 G + I V S L+ Sbjct: 866 GSGSDAAGIPAGIEAVKSALR 886 >gi|329666846|gb|AEB92794.1| alanyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026] Length = 882 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF QF + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I+ +E+++ KY + V ++I DH+R+ SF IAD Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I+ Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E+ERF TL GL LLD +++ D+ ++G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL ID F++ ++ Q+ RAR L S ++ + +L ++F Y L Sbjct: 414 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H + L VL +D + RR L Sbjct: 507 QVADHGEILNQNGELVARVADVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ I + Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + + + GA AL G KY D VRVV + S+ CGGTH +T +I Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES++ AG RRI A+TG A ++ +DE LK + +K +VV ++ I Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R Q + K Q+N ++ D+ ++ +L+ + D + Sbjct: 742 DDLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAVQADVEGMNDLRELADNWKSS 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L KA+++I + + + A DL + +A + GGGG GGRP+MAQ+G Sbjct: 802 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N AIA V +++ Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879 >gi|257792293|ref|YP_003182899.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243] gi|317490214|ref|ZP_07948702.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA] gi|257476190|gb|ACV56510.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243] gi|316910708|gb|EFV32329.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA] Length = 878 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 322/928 (34%), Positives = 487/928 (52%), Gaps = 87/928 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59 + IR +L FF++ G + PSSSLIP +DP+L+ T++GMV FK F Q+ Y Sbjct: 4 MTSAEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 62 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TTVQKCVR ND+D +G T RH +FFEMLGNFSFG YFKE A++ T+ Sbjct: 63 GTTTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY TVY +D+E ++WKK+ G+ D I R+ +DNFW TGPCGPCSEI+FDQ Sbjct: 119 LPAERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQ 177 Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GE G P + +R++E WNLVF Q++ Q LPK +IDTGMGLER+A +L Sbjct: 178 GEDFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAIL 237 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NY+ D+ + L+ E++TG Y + ++ R++ DH R+ +F+IADGILP+NE Sbjct: 238 QGVQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNE 297 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ LLG +P + + + MG YPE+++ + L + SE+ Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEE 357 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERFG L +G LD L+ L E+L GD AF L+DT+G P+++ +++ RG +D+ Sbjct: 358 ERFGSNLRQGRAFLDEALAELE-GEVLPGDRAFTLHDTYGFPVEVTRELCDERG-IEVDM 415 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F + ++EQR RARA + + + E G T+F+GY Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMNEILEAVGPTEFLGYT----------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V A+V+ G V+ +G + VV D TPFYAE GGQ+GD G Sbjct: 465 ------------KNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGDAG 512 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + + D ++ +G+ H VE G L ++ ID R ++ NH+ATH+ Sbjct: 513 VLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTATHI 572 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + LRFD TH + +T+ ++ +E N I +N PV Sbjct: 573 LHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANQKIMENHPVRAY 632 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + A +G AL G KY + VRV+ +E S LCGGTHVS+T EI + I S Sbjct: 633 ETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKITS 687 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+S+ A +RRIEA+T A +++ + +LK A L+V +V R + + LQ Sbjct: 688 ETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDLQT 747 Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + + ++ A + + E D+ +++++ D L+ ++ Sbjct: 748 KLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQPGAA 807 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG------ 879 ++ K+ K ++L T + ++ F+A + + + G Sbjct: 808 VLATEKDGKPTLLAAGTPEAVEVGFDADAVIKAIS------------------GNIKGGG 849 Query: 880 -----------PNGNKADQAIAGVASFL 896 + + D A+ L Sbjct: 850 GGKAAMAQAGGKDASGIDAALQAARDML 877 >gi|227524340|ref|ZP_03954389.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290] gi|227088571|gb|EEI23883.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290] Length = 887 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 495/918 (53%), Gaps = 63/918 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IR FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 8 MKTLSSSQIRQMFLDFFQEKGHAIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K Sbjct: 68 PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D+ +LY+TVY +D +A K W + G+S D II I DNFW + + GP GP SEIF Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYW-EAVGVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G P E R++E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++ Q N++ DLF +I+ +E + K + V R+I DH R+ + I D Sbjct: 240 RVVSIFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYV+RR++RRA+ + LG + L P + + S YP++++ + IE Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPKVLEQREYIE 359 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE++RF +TL GL LL V++ ++G AFKLYDT+G P ++ ++ Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + +Q+ RAR G S ++ L + ++++GYD L Sbjct: 420 EVGL-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKEDSEYVGYDTLDVK 476 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV+ ++V E+ + +EV+FD+TPFYAE GG Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513 Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + ++ + A H I + L L +D ++ Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVKGQQYHLVVDKLFHSRVEK 573 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL +L +LG H Q GS + P LRFD H +T +L+ +E VN I + Sbjct: 574 NHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIFK 633 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + + + GA AL KY D+VRVVS+ G S CGGTHV +T +I Sbjct: 634 EIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRDI 688 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSES + AGIRRIEA+T + A L Q +LK ++ LKV+Q +V RVE++ Sbjct: 689 GLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQLQ 748 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E + L+ + +L + + ++ II + +L+ + D + K Sbjct: 749 DEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRSK 808 Query: 820 IQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G +KA++++ V+++ + D A DL + A + GG GGGRP+MAQ+G Sbjct: 809 GLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQAG 866 Query: 879 GPNGNKADQAIAGVASFL 896 G + + D+A+ +L Sbjct: 867 GKDPSGLDKAMKAAIEWL 884 >gi|41407175|ref|NP_960011.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466707|ref|YP_882613.1| alanyl-tRNA synthetase [Mycobacterium avium 104] gi|48428510|sp|P61705|SYA_MYCPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830149|sp|A0QI75|SYA_MYCA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|41395526|gb|AAS03394.1| AlaS [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167994|gb|ABK68891.1| alanyl-tRNA synthetase [Mycobacterium avium 104] Length = 900 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 326/929 (35%), Positives = 482/929 (51%), Gaps = 70/929 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F G P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R++ TVY +D+EA +LW++I+GL A++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229 +D+GE GG P ++E+ RY+E+WNLVFMQ E+ + LP+ +IDTGMG Sbjct: 176 YDRGEEFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286 +ER+A VLQ N Y+ DL + +I A Y ++ V +R+I DH R+++ LI Sbjct: 234 VERVAFVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILI 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P N+GRGYVLRR++RR + ARLL P++ L+ + MG +YPEL+ Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDR 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F +TL G L D V S + ++G AF L+DT+G P+++ ++ Sbjct: 354 IARIAVAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D + F + + EQR RA+A + + + G T+F G+D L Sbjct: 414 ASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELS 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQTPF 520 + + I G+ V G +VE+V D+TP Sbjct: 473 S-----------------------EARILGIFVDGKRVPVVTHGGDGADRVELVLDRTPL 509 Query: 521 YAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 YAE+GGQ+ D G G+ R +TDVQK A+ ++VH VE G +++ +D Sbjct: 510 YAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVD 569 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 Q RR + HS TH++H AL +LG + Q GS P LRFD P+T + IE Sbjct: 570 PQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIE 629 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N + + V T E A A GA AL G Y ++VRVV + GG S LCGG Sbjct: 630 EVTNQAVQADFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGG 685 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV ++ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V Sbjct: 686 THVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 745 Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810 RV + E R + + +L +I +V ++ +S + + +L+ Sbjct: 746 PARVANLVERLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLR 805 Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 S++ ++ K+ S ++ L+ + + D A DL + A + G Sbjct: 806 SLVGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDLVKQLAAPV-DGR 864 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGG+ +AQ G + D A+ V S + Sbjct: 865 GGGKADLAQGSGKDPAGIDAALDAVRSEI 893 >gi|229822862|ref|ZP_04448932.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271] gi|229787675|gb|EEP23789.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271] Length = 881 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 338/919 (36%), Positives = 515/919 (56%), Gaps = 61/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF + H+++PS+SLIP NDPTL++ N+G+ P K F G E P Sbjct: 1 MKQLTSARIRQMYLDFFAEKQHQIIPSASLIPVNDPTLLWINAGVAPLKKYFDGTEVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + + VQKC+R ND++NVG T RHHT FEMLGN+S G YFK+ I AW+ LT + Sbjct: 61 RRLANVQKCIRT----NDIENVGYTARHHTLFEMLGNWSIGDYFKKEVIAWAWEFLTSER 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +LY T Y ED+E ++WK+ G AD ++ + DNFW + GPCGP +EIF Sbjct: 117 WLGFEADKLYATYYPEDKETPEIWKQQPGFIADHLVAVA--DNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E ER++EIWNLVF +F LP ++DTGMGLE Sbjct: 174 YDRGQEFNNLAADDPENYPGGENERWLEIWNLVFSEFNHLPDDTYQPLPNKNVDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289 R+ +V+Q NY+ DLF +IQA E+V+G+ + + V+ +VI DH+R+ SF I+DG Sbjct: 234 RVVSVIQNAKTNYETDLFVPIIQAIEKVSGVDFASAGDKQVSFKVIADHIRAVSFAISDG 293 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGY+LRR++RR++ + R LG + + L+P + MG+ Y EL + +++ Sbjct: 294 ALPSNEGRGYILRRLIRRSVMHGRKLGISRSFLSELVPVIADIMGAYYQELTEQLAFVQK 353 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 + +E+ERF +T++ G L+ ++++L + ++ G AF+LYDT G PL++ ++ + Sbjct: 354 VILNEEERFHETIEGGEAHLNDLMANLKAEGKTVVPGAQAFQLYDTFGFPLELTVELADS 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +G + +D F +E QR RARA S + L+ A F+GY+ L Sbjct: 414 QGFS-VDQEGFETEMEAQRQRARAARSKEESMQVQSDL--LQNITDAFDFVGYETL---- 466 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++ +KAIV V++ + Q+ V F+++PFYAE GGQ Sbjct: 467 -------------------VTNATIKAIVLDEAKVDQLPAHQEGWVFFNRSPFYAEMGGQ 507 Query: 528 LGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 + D+G + + DV+K +G F+H L S L +D R + + N Sbjct: 508 VADSGIILDGDQEVGQVLDVKKAPQGQFMHRIKTGEMPLTVGQSYTLEVDRAVRLKTNQN 567 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL +LGSH +Q GS + PD LRFD +H +T ELK IE VN IA + Sbjct: 568 HTATHLLHRALKVVLGSHANQAGSYVGPDRLRFDFSHFGKVTPEELKQIEAFVNQWIANS 627 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V M+ EDA A+GA AL G KY D VRVV++ S LCGGTHV++T EI Sbjct: 628 ANVDIAEMSIEDAKATGAMALFGEKYGDVVRVVNIAG-----ESIELCGGTHVNNTNEIG 682 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765 +++ES I AGIRRIEA+TGQ A + Q E L+ + + LKV ++ R+E++ E Sbjct: 683 TFKLLAESGIGAGIRRIEALTGQAAVADYQAQAELLQEVQNHLKVAQASQLLPRLEQLQE 742 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E R+ Q +L + + DV +++ + ++ + D +K+ Sbjct: 743 ELRQAQAQVESLNAKLLQAEAGQVFQDVQSVGDVTYVAINLGNQSVDGMRQMADIWKKEA 802 Query: 821 QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S I++LV S+E+K S+++ V E L A +L + A ++GGGG GG+P MAQ+GG Sbjct: 803 PSNILVLVA-SQEEKVSLMVQVDEQGLAAGLKAGNLIKPLAAIVGGGG-GGKPQMAQAGG 860 Query: 880 PNGNKADQAIAGVASFLKK 898 + +A V++ + + Sbjct: 861 KKPEAIPELLAQVSAVINE 879 >gi|227499550|ref|ZP_03929657.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098] gi|227218309|gb|EEI83563.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098] Length = 870 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 317/911 (34%), Positives = 500/911 (54%), Gaps = 56/911 (6%) Query: 1 MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M N+ + +R+ +L FF K GH LL S LIP +D +L+ N+GM P K FTG++K Sbjct: 1 MKNLGMNELRSKYLNFFGNKKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T+ QKCVR D++ VG+T RH TFFEMLGNFSFG YFK+ AI A++ LTKE Sbjct: 61 NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAISWAYEFLTKE 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 ++ + L++TV+ ED+EA+ +W + G+++++I+R DNFW + E GPCGPCSEIF Sbjct: 117 LEISKDDLWVTVFKEDDEAYNIWHEHIGIASERILREGKEDNFWEL-EVGPCGPCSEIFV 175 Query: 178 DQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+G ++ +R++E+WNLVF QF + + L +IDTGMGLER+A Sbjct: 176 DRGADRAIDENDNKPGNDNSDRFMEVWNLVFTQFNKDAQGNYTPLSHPNIDTGMGLERIA 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 VLQ K N +++D+ +I E++ KY + V+ RVI DH ++ +FL+ DG++P Sbjct: 236 MVLQNKDNIFEVDVMAAIISEIEKLANKKYKENKKDDVSIRVIADHSKAMTFLVCDGVIP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRR++RRA + +LLG + ++ + Y EL + I++ +R Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIDGEFLTKIVDKVIDTYKVEYDELETNRDKIKDIIR 355 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ERF KT+D+GL L+ ++ + ++L+G AFKLYDT+G PLD+ ++IL + L Sbjct: 356 DEEERFQKTIDQGLERLNSLIDAIERVHGKLLDGKEAFKLYDTYGFPLDLTKEILEEKDL 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D +FN ++ Q+ AR + + I + T+FIGYD L Sbjct: 416 -DVDEKTFNDQMQIQKQTARDARKKDAGWSLDNINT---DGLAKTEFIGYDKL------- 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + I ++ G ++ D+T FYAEAGG++ D Sbjct: 465 ----------------AIEAEILDIFEENSEASSISEGNNGIIISDKTSFYAEAGGEVAD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG + R ++ DVQK+ + F + V G + +D R + NHSAT Sbjct: 509 TGIIFNNSFRAKVIDVQKQKDIYFHY-VEVLSGEITKGQIATFEVDRDRRFDIQRNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG + Q GS + LRFD +++K +T E+K +ED VN IA+ V Sbjct: 568 HLLDQALRDVLGEGIKQAGSLVDEYKLRFDFSYNKAMTKEEIKEVEDIVNRQIAKQELVT 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + + GA L KY D+VRVVS+ G +S LCGG HV+ T +I++ I Sbjct: 628 KEIVDYKQSQQMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 E+S+ AG+RRIEA+TG++A L + LK +AS L + ++ R+E + E Sbjct: 683 NQETSVSAGVRRIEAVTGRKAYELLTKSENSLKVIASKLNTNVSTIINRIESLENEIENY 742 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + ++ K + + +I +N + V EL+ + ++ + II Sbjct: 743 KKDISRLKSNNSSDIVNELKADVKEIKGINLLVKKFDNVPMDELRDYENRIKNSFDNLII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +S K + V ++L +++NA + R A++ GG G GG+ + AQ+GG N +K Sbjct: 803 VFASVS--DKIVFTVSVDDNLTNKYNAGKIVREIAQITGGNG-GGKKNFAQAGGKNISKL 859 Query: 886 DQAIAGVASFL 896 D+A+ V+ + Sbjct: 860 DEALKKVSEII 870 >gi|188995245|ref|YP_001929497.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277] gi|188594925|dbj|BAG33900.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277] Length = 876 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 485/918 (52%), Gaps = 76/918 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF GH+++PS+ ++ DPTLMFTN+GM FK+I G + Y Sbjct: 1 MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D +RLY TV++ D+EA W + L ++II +DNFW M +TGPCGPC Sbjct: 121 DPQRLYATVFEGSPEEGLDRDDEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D GL ++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADSSLTPLPHKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI A +TG+ Y + + + RV+ DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIHALATMTGIGYGEDSASDIAMRVVADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI ++ E+E F +TL+ G+ LL+ ++ +L+G AF+LYDT G PLD+ Sbjct: 359 LISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTAL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +D F+ +++Q+ RAR + W L+E G ++F GYD Sbjct: 419 ILSENGMT-VDESGFDTEMQKQKERARNA-----AAVEAGDWVVLRE--GESKFSGYDFT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + +VV TPFYAE Sbjct: 471 ETETEILRYRQVKQKNK----------------------------EYFQVVLLDTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD+G I + K+ + VH +++ T + V I+ RRQ Sbjct: 503 MGGQVGDSGQLIDESGVAYDIFDTKRENNLSVHL--MKKLPESTTDTFVARINQDKRRQA 560 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL +LG+HV Q GS ++P+ LRFD +H ++ E++ +E+ V++ I Sbjct: 561 EANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERI 620 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + R + +A A GA AL G KY + VRV+ S LCGGTH+ ST Sbjct: 621 RADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYGS------SVELCGGTHIPST 674 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I IV+ESSI +G+RRIEA+TG A + +++ L ++ + N++ +++ Sbjct: 675 GMIGTFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFNNNP-NLIKSIKK 733 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKELKSVMDAL 816 + EE L+ A K + ++ DV F+ I ++++ K + + Sbjct: 734 MLEEDASLKKQIADMKHERMLKFKKSLLEQDVRRRGIRLFLFQEI--MEAETAKDIAFQI 791 Query: 817 QKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM 874 ++Q +++ G ++ K ++ +++++DL + +A L R +AK + GG GGG+PH Sbjct: 792 AGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHIQGG-GGGQPHF 850 Query: 875 AQSGGPNGNKADQAIAGV 892 A +GG N AI + Sbjct: 851 ATAGGKNPKGLPAAIQQI 868 >gi|150009141|ref|YP_001303884.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503] gi|298377115|ref|ZP_06987069.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19] gi|205830169|sp|A6LEZ8|SYA_PARD8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149937565|gb|ABR44262.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503] gi|298266099|gb|EFI07758.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19] Length = 873 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 332/920 (36%), Positives = 487/920 (52%), Gaps = 74/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR + W +LK+ G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKD--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V DQTPFYAE Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D +++ V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L ++ ESSI AG+RRIEA+T + A + Q + ++ L + + N+ +++ Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE +++ + K E++ + + M + + ++ +K+V ++ Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + GI + K ++++++++DL+ +A + + +AK + GG GGG+PH A Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N A+ V + Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870 >gi|255015752|ref|ZP_05287878.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7] Length = 873 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 333/920 (36%), Positives = 487/920 (52%), Gaps = 74/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR + W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V DQTPFYAE Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D +++ V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L ++ ESSI AG+RRIEA+T + A + Q + ++ L + + N+ +++ Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE +++ + K E++ + + M + + ++ +K+V ++ Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + GI + K ++++++++DL+ +A + + +AK + GG GGG+PH A Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N A+ V + Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870 >gi|301310907|ref|ZP_07216836.1| alanine--tRNA ligase [Bacteroides sp. 20_3] gi|300830970|gb|EFK61611.1| alanine--tRNA ligase [Bacteroides sp. 20_3] Length = 873 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 333/920 (36%), Positives = 487/920 (52%), Gaps = 74/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR + W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V DQTPFYAE Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D +++ A + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHLVA---KLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L ++ ESSI AG+RRIEA+T + A + Q + ++ L + + N+ +++ Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE +++ + K E++ + + M + + ++ +K+V ++ Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + GI + K ++++++++DL+ +A + + +AK + GG GGG+PH A Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N A+ V + Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870 >gi|256841698|ref|ZP_05547204.1| alanyl-tRNA synthetase [Parabacteroides sp. D13] gi|256736592|gb|EEU49920.1| alanyl-tRNA synthetase [Parabacteroides sp. D13] Length = 873 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 333/920 (36%), Positives = 489/920 (53%), Gaps = 74/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI +FN+A+++Q+ RAR + W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEAFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V DQTPFYAE Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D +++ V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L+++ ESSI AG+RRIEA+T + A + Q + ++ L + + N+ +++ Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE +++ + K E++ + + M + + ++ +K+V ++ Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + GI + K ++++++++DL+ +A + + +AK + GG GGG+PH A Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N A+ V + Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870 >gi|227888705|ref|ZP_04006510.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] gi|227850732|gb|EEJ60818.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] Length = 892 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P Sbjct: 11 MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 70 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K Sbjct: 71 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 126 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF Sbjct: 127 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 183 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF QF + P +IDTGMGLE Sbjct: 184 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 243 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I+ +E+++ KY + V ++I DH+R+ SF IAD Sbjct: 244 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 303 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE+++ + I+ Sbjct: 304 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVEQQAFIQ 363 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E+ERF TL GL LLD +++ D+ ++G AFKL+DT+G P ++ + Sbjct: 364 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 423 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL ID F++ ++ Q+ RAR L S ++ + +L ++F Y L Sbjct: 424 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 479 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 480 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 516 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H + L VL +D + RR L Sbjct: 517 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 576 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ I + Sbjct: 577 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 636 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + + + GA AL G KY D VRVV + S+ CGGTH +T +I Sbjct: 637 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 691 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES++ AG RRI A+TG A ++ +DE LK + +K +VV ++ I Sbjct: 692 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 751 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R Q + K Q+N ++ D+ ++ +L+ + D + Sbjct: 752 ADLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSS 811 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L KA+++I + + + A DL + +A + GGGG GGRP+MAQ+G Sbjct: 812 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 869 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N AIA V +++ Sbjct: 870 GKNPAGLKAAIAKVLQEVEE 889 >gi|282882868|ref|ZP_06291473.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B] gi|281297279|gb|EFA89770.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B] Length = 874 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 334/908 (36%), Positives = 511/908 (56%), Gaps = 50/908 (5%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ IR FL FF+K GH++LPS SLIP ND +L+ +GM P K FTG+ P Sbjct: 5 MKNLGLHEIRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPG 64 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKC+R G D+DNVG+T+RH TFFEMLGNFSFG YFK+ I A++ LT Sbjct: 65 KRVTTCQKCIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++++ L++TVY +D+EAF +WK G++ D+IIR+ DNFW + E GP GPC+EI+ D Sbjct: 121 EINKDDLWVTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVD 179 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +G EG+R+IE+WNLVF QF++ K L +IDTGMGLER+ATVLQ Sbjct: 180 RGLKYGSIDERPGGEGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 N ++ID +I E+++G KY + V+ RVI DH+R+ +FL+ D + P+NEG Sbjct: 240 GTNNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEG 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RLLG + L + G Y EL++ I++ ++ E+E Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKTTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F T++ G+ +LD + L ++IL+G+ +FKLYDT+G P D+ ++IL +G +D Sbjct: 360 KFQMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + FN +++Q+ RAR G S+ K+ +F+GY+ Sbjct: 419 MDGFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKF-KNEFVGYEE------------ 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + + I + V+ +K ++ D+TPFY E GGQ+GDTG Sbjct: 466 -----------DKCQANIIGIFKDYNEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTGYI 514 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GD + ++ D +K EG+ +H V G + ID R + NHS THLLH Sbjct: 515 DGDDFKCRVIDTKKTREGLHLHIVEVLDGEVTKSPCF-AEIDVVRRNNIRRNHSVTHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG HV+Q GS + D LRFD TH + ++ E+K +ED VN I + L V T + Sbjct: 574 KALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEDRVNQKIFEALSVTTTVT 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N + A GA L KY D VRV+S+ G +S LCGGTHV +T EI + I+SES Sbjct: 634 NPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILSES 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIE +TG L +A LK ++ +++ ++ E +KL Sbjct: 689 GVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKLSSSLNEIKKLNKAI 748 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K + ++LS + +N+++H + D L+ + D ++ K+ S +++L+ Sbjct: 749 DSLKHSSDKDELSNILDEVKEKNGINYLTHKFKDKDVNSLRDIADMVRNKLNS-VVVLLA 807 Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + +++DL+ + ++A + + +KV GGGG GGR MA +GG + K +A Sbjct: 808 TENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVCGGGG-GGRADMATAGGRDLGKVSEA 866 Query: 889 IAGVASFL 896 + + + Sbjct: 867 LKTLEGLI 874 >gi|254775877|ref|ZP_05217393.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC 25291] Length = 900 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 326/929 (35%), Positives = 482/929 (51%), Gaps = 70/929 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F G P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R++ TVY +D+EA +LW++I+GL A++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229 +D+GE GG P ++E+ RY+E+WNLVFMQ E+ + LP+ +IDTGMG Sbjct: 176 YDRGEKFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286 +ER+A VLQ N Y+ DL + +I A Y ++ V +R+I DH R+++ LI Sbjct: 234 VERVAFVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILI 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P N+GRGYVLRR++RR + ARLL P++ L+ + MG +YPEL+ Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDR 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F +TL G L D V S + ++G AF L+DT+G P+++ ++ Sbjct: 354 IARIAVAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D + F + + EQR RA+A + + + G T+F G+D L Sbjct: 414 ASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELS 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQTPF 520 + + I G+ V G +VE+V D+TP Sbjct: 473 S-----------------------EARILGIFVDGKRVPVVTHGGDGADRVELVLDRTPL 509 Query: 521 YAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 YAE+GGQ+ D G G+ R +TDVQK A+ ++VH VE G +++ +D Sbjct: 510 YAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVD 569 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 Q RR + HS TH++H AL +LG + Q GS P LRFD P+T + IE Sbjct: 570 PQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIE 629 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N + + V T E A A GA AL G Y ++VRVV + GG S LCGG Sbjct: 630 EVTNQAVQADFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGG 685 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV ++ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V Sbjct: 686 THVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 745 Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810 RV + E R + + +L +I +V ++ +S + + +L+ Sbjct: 746 PARVANLVERLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLR 805 Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 S++ ++ K+ S ++ L+ + + D A DL + A + G Sbjct: 806 SLVGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDLVKQLAAPV-DGR 864 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGG+ +AQ G + D A+ V S + Sbjct: 865 GGGKADLAQGSGKDPAGIDAALDAVRSEI 893 >gi|262384031|ref|ZP_06077167.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B] gi|262294929|gb|EEY82861.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B] Length = 873 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 333/920 (36%), Positives = 488/920 (53%), Gaps = 74/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR + W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V DQTPFYAE Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D +++ A + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHLVA---KLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L+++ ESSI AG+RRIEA+T + A + Q + ++ L + + N+ +++ Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE +++ + K E++ + + M + + ++ +K+V ++ Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + GI + K ++++++++DL+ +A + + +AK + GG GGG+PH A Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N A+ V + Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870 >gi|311894842|dbj|BAJ27250.1| putative alanyl-tRNA synthetase [Kitasatospora setae KM-6054] Length = 888 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 323/922 (35%), Positives = 503/922 (54%), Gaps = 61/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SL+ +DPTL+ N+GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLRFFEERGHTVVPSASLVA-DDPTLLLVNAGMVPFKPYFLGEIKPQFSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH +FF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCVRTL----DIEEVGKTTRHGSFFQMCGNFSFGDYFKEGAIKFAWELLTSPVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ RL+ITVY +D+EA ++W+++ G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLEPERLWITVYQDDDEAERIWREVIGVPAERIQRLGMKDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G G G + GERY+EIWNLVFMQ+E+ + + LP +IDTG+GL Sbjct: 176 YDRGPAY-GEEGGPAVNGERYLEIWNLVFMQYERGHGDGKDGFEILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A VLQ N ++ID + ++ + ++TG Y + + V+ RV+ DH R++ L+ D Sbjct: 235 ERLAAVLQGVDNLFEIDTSRMILDRAAELTGHTYGADHRSDVSLRVVTDHFRTALMLVGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRI+RRA+ RLLG TEP+ L+ M YPEL + IE Sbjct: 295 GVTPGNEGRGYVLRRILRRAIRNMRLLGATEPVAKDLIDISIKAMAPQYPELETDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F +TL G LLD ++ + +L+G+ AFKL+DT+G P+D+ ++ Sbjct: 355 TVVVAEENAFLQTLRSGTSLLDAAVTETKQSGGAVLSGEQAFKLHDTYGFPIDLTLEMAE 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL +D F + ++EQR RA+A + +G + + + ++ GA+ F GY G Sbjct: 415 EQGL-QVDEAGFRRLMQEQRDRAKADAKAKKTGHADVAAYREVADRAGASVFTGYAHTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + V ++ G A G +VE++ D+TPFYAE G Sbjct: 474 -----------------------EATVVGLLVDGVPSPAATEGDEVELILDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G +++ DVQ+ G+ VH V G + S TID RR +S Sbjct: 511 GQLADHGRIRLDSGAVVEVRDVQQPVPGVIVHSGGVLFGEVVLGASAYATIDTDRRRAVS 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS P RFD + + L +E +N+++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENAPGRFRFDFGSPAAVPGSVLTDVEQKINEVLV 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M ++A GA A+ G KY D VRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVTAEVMTMDEARKQGAIAMFGEKYGDSVRVVTI-----GDFSKELCGGTHVGNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RR+EA+ G A L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYKFLAREHTVVAQLTELVKGRPEELPEKISGML 745 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + + + + ++ + V ++ + + EL+ ++ ++ Sbjct: 746 AKLKDAEKEIERFRAEKVLQAAAGLAEGAEDVRGVALVAARVGDGTGADELRKLVLDVRA 805 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ S ++ ++ ++ +V+ + A +L R +AK LGGGG GG+ +AQ Sbjct: 806 RLGSRPAVVAAFTVANDRPLTVIATNEDARGRGIKAGELVRAAAKTLGGGG-GGKDDVAQ 864 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 GG N AI V + + + Sbjct: 865 GGGTNPAAVADAIEAVRALVAE 886 >gi|268318981|ref|YP_003292637.1| hypothetical protein FI9785_490 [Lactobacillus johnsonii FI9785] gi|262397356|emb|CAX66370.1| alaS [Lactobacillus johnsonii FI9785] Length = 882 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF QF + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +++Q+ N++ DLF +I+ +E+++ KY + V ++I DH+R+ SF IAD Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I+ Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQCLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E+ERF TL GL LLD +++ D+ ++G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL ID F++ ++ Q+ RAR L S ++ + +L ++F Y L Sbjct: 414 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H + L VL +D + RR L Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ I + Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + + + GA AL G KY D VRVV + S+ CGGTH +T +I Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES++ AG RRI A+TG A ++ +DE LK + +K +VV ++ I Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R Q + K Q+N ++ D+ ++ +L+ + D + Sbjct: 742 DDLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSS 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L KA+++I + + + A DL + +A + GGGG GGRP+MAQ+G Sbjct: 802 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N AIA V +++ Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879 >gi|255532429|ref|YP_003092801.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366] gi|255345413|gb|ACU04739.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366] Length = 900 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 308/945 (32%), Positives = 488/945 (51%), Gaps = 93/945 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +L+FF+ H ++ S+ ++ NDPTLMFTN+GM FK++F G+ Y V Sbjct: 1 MTAKEIRQAYLKFFESKQHHIVASAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q+C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT+ + + Sbjct: 61 TDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYKIP 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + +LY+++++ DE EA++LWK+ + ++II DNFW M +TGPCGPCS Sbjct: 121 KDKLYVSIFEGDEKEGLPRDTEAYELWKQY--VPEERIILGNKKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G + + + IEIWN VFMQF + +LP +DTGMG Sbjct: 179 EIHVDCRPDDERKLVEGKTLVNADHPQVIEIWNNVFMQFNRLKDGSLQLLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ VLQ K++NYD D+F+ LIQ G++Y N + RV+ DH+R+ +F+IA Sbjct: 239 FERLVRVLQGKSSNYDTDVFQPLIQFIAAKAGIQYGMNEQTDIAMRVMADHVRAIAFVIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L +P + L+P L + + EL + Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKDPFLNELVPVLAEQFKGVFEELALQQDF 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH-------------------------LGKDEI 381 +++ + E+ F +TL G+ D L + Sbjct: 359 VQKVILEEEVSFLRTLATGIQRFDSYTKKQAEFLMSENAIDPEKSFEDQWVHSILKDQMV 418 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 ++G+ AF+L DT+G P+D+ + + + + +D+ +N+AL +Q+ R+RA Sbjct: 419 ISGEFAFELNDTYGFPIDLTELMAREKRWS-VDMEEYNKALLKQKERSRAA------TAV 471 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + + L +F+GYD + + R+V Sbjct: 472 DTGDWVLVNPDLEVEFVGYDDAEAETEIIKYRRV-------------------------- 505 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 A ++ ++V +TPFYAE+GGQ+GDTG + K E + H + Sbjct: 506 --SAKGKEQYQIVLSKTPFYAESGGQVGDTGRLEDHSRLFFVEITDTKKENGVIVH-YAD 562 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 E ID R NH+ATHLLH AL +LGSHV+Q GS + PD LRFD Sbjct: 563 TLPEDIEGHFWAVIDENKRLLSQDNHTATHLLHAALKKVLGSHVNQKGSLVNPDYLRFDF 622 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVS 680 +H +T EL IE VN I +N+P+ R + + AI+SG AL G KY D VR+++ Sbjct: 623 SHFARVTDEELSQIEHLVNQKIRENIPLKEQRYVPYDQAISSGVTALFGEKYGDLVRIIT 682 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + +S LCGGTHV +TG+I I++ES++ AG+RRIEAIT +A + ++ Q++ Sbjct: 683 FDDH----YSKELCGGTHVQATGQIGYFKIIAESAVAAGVRRIEAITADKAEAFVLAQNK 738 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVN 795 +L L LK + ++ V + EE +L+ K L+ + I +N Sbjct: 739 ELNELRELLKGN-KDLKAAVAGLIEENNRLKKDAEKAVLEQSANLKHEIVHHLKTINGIN 797 Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAV 853 ++ + ++ +K++ A++ + + ++ + K + ++++E+L+ NA Sbjct: 798 LIATHVDLPNADAVKNLAYAVKD-MVDDLFLVFTTLIDDKPGITVMLSENLVKDRGLNAS 856 Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 ++ R AK + GG GGG+P A +GG N + + + + Sbjct: 857 NIVRELAKDIQGG-GGGQPFYATAGGKNKEGLAGVLHKAQAMMTQ 900 >gi|260061769|ref|YP_003194849.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501] gi|88785901|gb|EAR17070.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501] Length = 871 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 341/920 (37%), Positives = 494/920 (53%), Gaps = 73/920 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+ FL FF+ GH ++PS+ L+ +DPTL+F N+GM PFK F G P Y V Sbjct: 1 MTSREIRSRFLTFFKDRGHRIVPSAPLVVKDDPTLLFVNAGMNPFKEYFLGVSNPKYPRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE I AW+ LT+ +D Sbjct: 61 ADTQKCLRVSGKHNDLEEVGRDTYHHTLFEMLGNWSFGDYFKEETIGWAWEFLTEVCGID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T+++ D+EA+ WK I L D+I+ + DNFW M + GPCGPC Sbjct: 121 RDRLYVTIFEGSSDADALERDQEAYDFWKAI--LPEDRILMGSKKDNFWEMGDQGPCGPC 178 Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ +EIWNLVF+Q+ ++ LP+ IDTGM Sbjct: 179 SEIHVDIRPEEERRKTPGSELVNQDHPEVVEIWNLVFIQYNRKADGSLEPLPEKHIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLI 286 G ER+ VLQ +NYD DLF LI+ ++TG Y + + RVI DH+R+ SF I Sbjct: 239 GFERLCMVLQGVRSNYDTDLFTPLIREIGKITGKDYGQSEEDDIAIRVIADHIRAVSFTI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP N G GYV+RRI+RRA+ Y LG EP M L+ L EMG A+PEL + + Sbjct: 299 ADGQLPGNSGAGYVIRRILRRAIRYGFTFLGAREPFMFRLVGTLVAEMGEAFPELAEQRR 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 L+E +R E+ F KTL++GL LD V++ + G AF+LYDT G P+D+ IL Sbjct: 359 LVENVVREEEVSFLKTLEQGLARLDAVIAETRGKTVDGGR-AFELYDTFGFPIDLTSLIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG +D F+ A++EQ+ R+RA S + + W + A++F+GYD L Sbjct: 418 RERGYE-LDRQGFDAAMKEQKDRSRAA-----SESAAEDWVKVH-PGPASEFVGYDALEA 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +++ RK VE +G ++V D TPFY E G Sbjct: 471 RSRIRKYRK---------------------------VESKKTGTLYQLVLDTTPFYPEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD+G G G + +K +H E + +D + R+Q Sbjct: 504 GQVGDSGHLEGSGGAVTEILDTRKENNEILHI--TEALPEDPGAEFLAVVDAERRKQTRR 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LGSHV Q GS + P LRFD +H + EL+ +ED VN+ IA Sbjct: 562 NHTATHLLHQALREVLGSHVEQKGSAVQPGYLRFDFSHFSKLKDEELRRVEDFVNERIAD 621 Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L V + + ++A+ +GA AL G KY D VR V S LCGGTH +T E Sbjct: 622 GLDVEIKKGVPMQEALEAGAMALFGEKYGDTVRTVRFGD------SIELCGGTHADNTAE 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I+SES++ AG+RRIEAIT R + ++ L+++ + LK +Q + VE + Sbjct: 676 IWHFKILSESAVAAGVRRIEAITSDAVREYFADKERVLEAIRTRLKNAQDPL-QAVESLQ 734 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE L+ + K + + K V+F++ + ++D+ +K + L + Sbjct: 735 EENAGLKKELERLKREQAGNLKGDLKSALDKRDGVHFLARQV-DLDASSMKDLAFQLGGE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ + +L+G ++ KA + + +++ L NA + R K + GGG GG+P A + Sbjct: 794 VED-LFLLLGSEQDGKALLTLYISKGLAAEKDLNAGAIIRELGKHIQGGG-GGQPFFATA 851 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG N + +A+ AS+L+ Sbjct: 852 GGKNPSGIGKALEAAASYLQ 871 >gi|255325071|ref|ZP_05366177.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141] gi|255297636|gb|EET76947.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141] Length = 894 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 324/927 (34%), Positives = 485/927 (52%), Gaps = 66/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F + F +GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 1 MKTHEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 LATSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVD 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSE Sbjct: 116 EGGFGLDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228 I++D+G G G + RY+EIWNLVFMQ E+ + LPK +IDTG+ Sbjct: 176 IYYDRGPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284 G+ER+A +LQ+ N Y+ DL + +I +E++TG Y + + RV+ DH R+ Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMM 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNR 354 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPL 398 I +E++ F KTL+ G L D + L ++L G+ AF+L+DT+G P+ Sbjct: 355 ERILRVAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ GL +D+ FN A+ EQR RA+A + G T+ + T F Sbjct: 415 DLTLEMAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFT 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G++ L + V +V+ GE V++ G++VEV+ D T Sbjct: 474 GFEELTSD-----------------------ARVIGLVRGGEKVDQVREGEQVEVILDHT 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 P YAEAGGQ+ D G + L++ DVQK + ++VH A V G L MS+ +D Q Sbjct: 511 PLYAEAGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQ 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R + HSATHL+H AL +LG Q GS P LRFD +++ ++ A+L+ I Sbjct: 571 WRHGATQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALI 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I N V T + E+A A GA AL G Y VRVV + GG S LCGGTH Sbjct: 631 TNQAIDSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V S+ EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV ++ Sbjct: 687 VGSSAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPE 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSV 812 R+ ++ E+ + + + Q S + ++ + +L++V Sbjct: 747 RIAQLSEKLKAAEKEIETLRKQQLAARASEFVSAAKDVNGFKVIALTLPEGTTGGDLRTV 806 Query: 813 MDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 L+ ++ + +I+L K K + + + + D+ + + + G GGG Sbjct: 807 ATDLRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGG 865 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 +P MAQ G A++ V L+ Sbjct: 866 KPDMAQGSGSTAAGAERGFEAVKDMLE 892 >gi|311747311|ref|ZP_07721096.1| alanine--tRNA ligase [Algoriphagus sp. PR1] gi|311302637|gb|EAZ83190.2| alanine--tRNA ligase [Algoriphagus sp. PR1] Length = 874 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 337/919 (36%), Positives = 496/919 (53%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+TF+EFFQ H+ +PSS ++ NDPTLMFTN+GM FK+ F G E P + V Sbjct: 1 MEAKKIRSTFIEFFQSKQHQYVPSSPIVVKNDPTLMFTNAGMNQFKDAFLGNETPKFARV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+LLT F L Sbjct: 61 ANSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTVVFKLP 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY++V++ D+ EA+ WKKI + D+II + DNFW M +TGPCGPCS Sbjct: 121 KERLYVSVFEGDQGDGLSLDTEAYNFWKKI--VPEDRIIMGSKKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + E+ IEIWNLVFMQ+ + + LP +DTGMG Sbjct: 179 EIHIDLRPEAELAEIPGKDLVNNDHEQVIEIWNLVFMQYNRLSDGSLKELPAKHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ +Q+K++NYD DLF + A + +G Y + + RVIVDH+R+ SF IA Sbjct: 239 FERLVRAIQQKSSNYDTDLFAPFLNAIAKKSGKVYGNDEQTDIAFRVIVDHIRAISFTIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y G+ EP + L + G +PE+ Q + Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYGYTFFGFQEPFLYELTSLIAEHFGDVFPEVRQQQEF 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404 I + + E+ F +TL+ GL +LD + + L D ++ G AF+LYDT G PLD+ I Sbjct: 359 ISKVIYEEEASFLRTLENGLKILDQIKAELQEKNDTVIPGKTAFELYDTFGFPLDLTSLI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL+ +D F +E+Q++R+RA S + W + E G +FIGYD L Sbjct: 419 ARENGLS-LDEKGFLAEMEKQKTRSRAA-----SESETGDWVLVHEDEGV-EFIGYDFLE 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + R V + G+K +VV D+TPFYAE+ Sbjct: 472 SFSNIIKYR----------------------------VVKEKKGEKYQVVLDKTPFYAES 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G I D ++++ D +K+ + I V++ E+ +D + R Sbjct: 504 GGQVGDKGWLISDNEKIRVIDTKKENDLIIHL---VDKLPSNPEVKFSAEVDRKGRALSM 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLL AL +LG H+ Q GS ++PD LRFD +H +T E+ +E+ VN I Sbjct: 561 NNHTATHLLQSALKEVLGDHIQQRGSLVSPDLLRFDFSHFGKLTEEEITKVEEIVNTKIR 620 Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N+P V R + E+A + GA AL G KY D VRV++ + S LCGGTHV T Sbjct: 621 ENIPLVEKRNVPIEEAKSMGATALFGEKYGDFVRVITFDP----DFSVELCGGTHVPYTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I L I SE S +G+RRIEAIT + A +L GQ+ +K + LK ++ +E + Sbjct: 677 QIGLFKITSEGSSASGVRRIEAITAKAAEDYLRGQENLVKEIQELLK-HPKDLKKSIEAL 735 Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQK 818 +E L+ + K +L +A +N + + ++ LK + L+ Sbjct: 736 IQEKNDLKKEIELLYQEKAGAVKGELLKEFVAGEGINTLIAKVDLPNADSLKKLGYELKN 795 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++++ I+L + + K + +++ E+L+ NA + R AK + GGG GG+P A Sbjct: 796 EVENPFIILAA-NIDGKPQIAVIIDEELVKSKNLNAGQIVRDLAKEIQGGG-GGQPFFAT 853 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + ++ Sbjct: 854 AGGKNLAGLENVVSKAREL 872 >gi|111024085|ref|YP_707057.1| alanyl-tRNA synthetase [Rhodococcus jostii RHA1] gi|123144037|sp|Q0S0N7|SYA_RHOSR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110823615|gb|ABG98899.1| alanine--tRNA ligase [Rhodococcus jostii RHA1] Length = 890 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 324/919 (35%), Positives = 481/919 (52%), Gaps = 60/919 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+SLI +DP L+F N+GMV F F GQ+ P Y Sbjct: 1 MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT Sbjct: 60 TSVQKCVRTL----DIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D R+++TVY +D++A +W+ G+ +I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGFDPERIWVTVYLDDDDARDIWRDEVGVPESRIQRRGMADNYWSMGIPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ E+ N + LPK +IDTGMG+ Sbjct: 176 YDRGPEY-GKEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G KY ++ V RVI DH R+++ LIAD Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVIAKAEELSGRKYGAVHDDDVRFRVIADHARTAAMLIAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N+GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ F KTL G L +G + GD AF L+DT+G P+D+ ++ Sbjct: 355 TVAVGEETAFLKTLTSGSKLFEGAAESVKASGKSTIGGDQAFALHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + EQR RA+ + + + G T+F G+ L Sbjct: 415 EAGLT-VDEEGFRTLMAEQRQRAKDDAQARKHAHADLTVYKELLDRGPTEFTGFHELVS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A++ QG+ V A +GQ VEV+ D++P YAEAGG Sbjct: 473 ----------------------EAHVLALISQGQRVPVATAGQDVEVILDRSPLYAEAGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G G+R+++ DVQK A+ ++VH V+ G L ++ +D R+ + Sbjct: 511 QIADLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQEGQLTEGDVVLAQVDAAWRKGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG + Q GS P LRFD + +T A+ + IE N+ +A + Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAAD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + + + A + GA AL G Y D VRVV + GG S LCGGTHV S+ +I Sbjct: 631 YSVNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ E S+ +G+RR+EA G + +L + L L+S LKV V RVE + E Sbjct: 687 NVTLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI 820 R + + + Q + ++ V ++ V +L+ ++ ++ + Sbjct: 747 LRVAEKELEQTRAQAVLAAAGTFVDKAQRVGPVLLVADSAPAGVGGNDLRGLVTDIRGRF 806 Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ L+G + K ++ V + + A DL + +GG G GG+ MAQ Sbjct: 807 GTQPAVVALLG-DVDGKVPFVVAVNKAAQELGLAAGDLVKGFGPKIGGRG-GGKADMAQG 864 Query: 878 GGPNGNKADQAIAGVASFL 896 G + + A+ V + Sbjct: 865 SGSDTSGIAAALDAVRGQV 883 >gi|297588300|ref|ZP_06946943.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516] gi|297573673|gb|EFH92394.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516] Length = 873 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 330/909 (36%), Positives = 510/909 (56%), Gaps = 53/909 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ IR FL +F + GH ++ S LIP +D +L+ N+GM P K FTG++K Sbjct: 1 MKDYGLNEIRKKFLNYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK+ AI AWD LT E Sbjct: 61 DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKKEAITWAWDFLTNEL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + L+ITVY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D Sbjct: 117 EVPKDILWITVYEEDEEAYNIWVNEVGVSPERVVKLGKGDNFWEL-DQGPCGPCSEIHVD 175 Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +G +EGER++E+WNLVF QF + + + +IDTGMGLER+ VL Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 + N ++I L K +I+ E+++G+KY N V+ R+I DH+R+ +FLI DG++P+NE Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHQNDVSIRIIADHVRAMTFLIYDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RGYVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+ Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEERDRIVKIANAEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ++F +TLD GL +LD +L ++ +G+ AFKLYDT+G P+D+ ++++ +D Sbjct: 356 KKFQETLDLGLSILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + +EEQ+ RAR G + + E T+F GYD L+ Sbjct: 414 DEFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFDGYDSLKD---------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V I + E +GQ ++ D T FY E GGQ+GD G Sbjct: 462 -------------ESEVIEIYGEDE--NNLNAGQMGIILLDCTTFYGEGGGQVGDKGIIY 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVIEGSLNVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV+Q GS + + LRFD+TH + +T +L+ +E VN+ IA +PV M+ Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVTKEQLEKVEQIVNEKIALGIPVKIDEMS 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E + + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SESS Sbjct: 627 LEQSQSIGARGLFEDKYQDVVRVVQM-----GDYSKELCGGTHVKTTSDIQMLKILSESS 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVE---EIWEEYRKLQ 771 + AG+RRIEAITG+ +L +D + ++ LK ++ + R+E E +E +K Sbjct: 682 VAAGVRRIEAITGRAVYKYLNERDSLIDTVKHSLKASNEDEITRRIEMNTEEIKELKKKL 741 Query: 772 LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + L N++ + I +S +D+ + + ++ K++ G+++L Sbjct: 742 KDITNKDLSSNIDSVIEDAVDIDGTKVCVFALSGLDNNSFRDFGENIKSKLEDGVVILAN 801 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + +K D+A Sbjct: 802 -SDESKVSFITLVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859 Query: 889 IAGVASFLK 897 + +K Sbjct: 860 LQKGIETVK 868 >gi|168000843|ref|XP_001753125.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695824|gb|EDQ82166.1| predicted protein [Physcomitrella patens subsp. patens] Length = 927 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 495/919 (53%), Gaps = 65/919 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FLEF+ GH++LPSSSL+P +DPT++ T +GM+ FK IF GQ Y TT QK Sbjct: 39 IRKRFLEFYAARGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGQVPRSYPCATTTQK 97 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 VR ND++NVGRT RHHTFFEMLGNFSFG YFK +AI AW+L T+EF L R++ Sbjct: 98 VVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKRQAIAWAWELATQEFKLPLERVW 153 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V+++D+EAF +W+ G+ ++I R+ DNFWS TGPCGPCSE++FD G Sbjct: 154 VSVFEDDDEAFAIWRDEVGVPVERIKRMGAEDNFWSSGATGPCGPCSEMYFDFHPE-RGT 212 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 + R+IE +NLVFMQ+ + + + L +IDTG+GLERMA +LQ+ NNY+ Sbjct: 213 DDADLNDDSRFIEFYNLVFMQYNRTDDGQLEPLKNKNIDTGLGLERMAQILQQVPNNYET 272 Query: 247 DLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL +I + + + Y+ + +VI DH R+ +LI+DG+ P+N GRGY++RR Sbjct: 273 DLIYPIIARAAALANVDYQSADDRVKTYLKVIGDHTRAVVYLISDGVYPSNIGRGYIVRR 332 Query: 304 IMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 ++RR + RLLG + + P + Q K+ I L+ E+ Sbjct: 333 LIRRVVRMGRLLGIRGDGQGNQEGAFLPTVAEVAVAMSKDVDPNVEQQKIKIYNELKREE 392 Query: 356 ERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 RF +TL++G LL+ +L+ L+G F+LYDT G P++I +++ RG+ Sbjct: 393 LRFVQTLEKGEKLLEELLAEALEKRGTDTPCLSGKDVFRLYDTFGFPVEITEEVASERGV 452 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D+ F +E QR +++A + + + T+F+GYD L Sbjct: 453 T-VDLAGFESEMEIQRKQSQAAHNVIKLAVG-GAAQEMLAQVPETEFLGYDDLTS----- 505 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 SS + AI+ GE + EA G++VE++ D+TPFYAE+GGQ+GD Sbjct: 506 ------------------SSSILAILANGEALGEASEGEEVELLLDRTPFYAESGGQVGD 547 Query: 531 TGCAIGDGIRLQ---ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G G + K G F H +V+ GI++ + + +D R + I+H Sbjct: 548 HGYLRVFGGDSEAVVKVKDVVKEAGRFRHIGVVQDGIVKVGLGVEAEVDPVLRTRAQIHH 607 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LGS VSQ GS ++ D LRFD + +T AE+ +E VN+ I + Sbjct: 608 TATHLLQAALKNVLGSDVSQAGSLVSFDRLRFDFNLPRAMTDAEINKVEMLVNEWIGMGV 667 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV + M A GA A+ G KY ++VRV+SV S LCGGTHV + EI Sbjct: 668 PVTSEEMAIAAAKEKGAIAMFGEKYGEQVRVISVPG-----ISMELCGGTHVRNIAEIRG 722 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 L I+SE I +G+RRIEA+ G ++ +D +K L++ LKV ++ GRV + EE Sbjct: 723 LKIMSEQGIASGVRRIEAVAGNAFIEYINARDAVVKQLSASLKVKADDLAGRVVGLQEEV 782 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIAD--VNFMSHIISEVDSKELKSVMDALQKKI 820 R + A +++L V I D + + ++D++ LK+ + L K+ Sbjct: 783 RASRNEAAALRVELAVAKAEALLSTATSIGDSSTRVLVASLDKIDAESLKAAAEHLLAKL 842 Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +++ + K S++ + ++ A AK+ GGGG GGRP+ AQ+G Sbjct: 843 GDPAAVVVGSSPGDGKVSLVATFSPSVVKQGIQAGKFVGTIAKICGGGG-GGRPNFAQAG 901 Query: 879 GPNGNKADQAIAGVASFLK 897 G K D+A+ LK Sbjct: 902 GRQPEKLDEALEKAREDLK 920 >gi|34540951|ref|NP_905430.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83] gi|41018164|sp|Q7MV54|SYA_PORGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|34397266|gb|AAQ66329.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83] Length = 876 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 484/918 (52%), Gaps = 76/918 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF GH+++PS+ ++ DPTLMFTN+GM FK+I G + Y Sbjct: 1 MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D +RLY TV++ D EA W + L ++II +DNFW M +TGPCGPC Sbjct: 121 DPQRLYATVFEGNPEEGLDRDNEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D GL ++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+ +TG+ Y + + + RV+ DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIRTLATMTGIGYGEDSTSDIAMRVVADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI ++ E+E F +TL+ G+ LL+ ++ +L+G AF+LYDT G PLD+ Sbjct: 359 LISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTAL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +D F+ +++Q+ RAR + W L+E G ++F GYD Sbjct: 419 ILSENGMT-VDESGFDTEMQKQKERARNA-----AAVEAGDWVVLRE--GESKFSGYDFT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V + + +VV TPFYAE Sbjct: 471 ETETEILRYRQVKQKNK----------------------------EYFQVVLSDTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD+G I + K+ + VH +++ T + V I+ RRQ Sbjct: 503 MGGQVGDSGQLIDESGVAYDIFDTKRENNLSVHL--MKKLPESTTDTFVARINQDKRRQA 560 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL +LG+HV Q GS ++P+ LRFD +H ++ E++ +E+ V++ I Sbjct: 561 EANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERI 620 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + R + +A A GA AL G KY + VRV+ S LCGGTH+ ST Sbjct: 621 RADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYGS------SVELCGGTHIPST 674 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I IV+ESSI +G+RRIEA+TG A + +++ L ++ + N++ +++ Sbjct: 675 GMIGAFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFNNNP-NLIKSIKK 733 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKELKSVMDAL 816 + EE L+ A K + ++ DV F+ I ++++ K + + Sbjct: 734 MLEEDASLKKQIADMKHERMLKFKKSLLEQDVRRRGIRLFLFQEI--MEAETAKDIAFQI 791 Query: 817 QKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM 874 ++Q +++ G ++ K ++ +++++DL + +A L R +AK + GG GGG+PH Sbjct: 792 AGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHIQGG-GGGQPHF 850 Query: 875 AQSGGPNGNKADQAIAGV 892 A +GG N AI + Sbjct: 851 ATAGGKNPKGLPAAIQQI 868 >gi|326336584|ref|ZP_08202753.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691249|gb|EGD33219.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 877 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 330/925 (35%), Positives = 483/925 (52%), Gaps = 78/925 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP + V Sbjct: 1 MTSQEIRQQFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEYFLGNAKPKQKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + Sbjct: 61 VDTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEVYRIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA+ +WK+ ++ D I+ DNFW M + GPCGPCS Sbjct: 121 KENLYVTVFEGSPEEGVPLDQEAYDIWKER--IAEDHILLGNKKDNFWEMGDQGPCGPCS 178 Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + + G + + + IEIWN VFM+F ++ LP ++DTGMG Sbjct: 179 EIHVDIRSEEEKAEIPGRDLVNRDHPQVIEIWNNVFMEFNRKADGSLEKLPAHNVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ VLQ+K +NYD D+F LI E++T KY V RV+ DH+R Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITKSKYSNGTNVTPEQEEINVAIRVVSDHIR 298 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + +F IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MGS +PE Sbjct: 299 AVAFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLSKQMGSTFPE 358 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + LI ++ E+ F +TL++GL++LD ++ + D+ L+G AF+LYDT+G P D Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQN-NPDKQLSGSKAFELYDTYGFPKD 417 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + IL +G+ +D F + L++Q+ R+RA + W L++ +FIG Sbjct: 418 LTALILSEKGMT-LDERGFEENLQKQKERSRAA-----AQVKADDWVILRDDEEE-EFIG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L+ + + RK VE G ++VF+ TP Sbjct: 471 YDTLKAIVRLVKYRK---------------------------VESQKDGTLYQLVFNTTP 503 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FY E GGQ+GD G L KK + +H A E + + Sbjct: 504 FYPEGGGQVGDKGTLQAANGELIYILDTKKENNLIIHIA--EHLPENLNDPFQAEVASLS 561 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +T EL+ +E V Sbjct: 562 RTLAEANHSATHLLHQALREVLGTHVEQKGSHVAPESLRFDFSHFAKLTQEELRKVERLV 621 Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + +P+ R + AI SGA AL G KY D VR++ S LCGGTH Sbjct: 622 NKRIFEKIPLEEHRNIPIRQAIESGAMALFGEKYGDHVRMIQFGE------SKELCGGTH 675 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +TG+I I+SE ++ AGIRRIEAIT A + Q+ L+ + + LK + + Sbjct: 676 VKNTGDIWFFKIISEGAVAAGIRRIEAITSAGALKYFADQEALLEGIKASLK-NPQEPIK 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVM 813 + + EE +L + K + + K I + ++ + +D LK + Sbjct: 735 SIINLQEENAQLHKEIEQLKREQAKQLKEGLKKEFIPINGIQCLTKQL-NLDLATLKDLA 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871 L ++++ I+ + + KA +L + ++L +A + R K + GGG GG+ Sbjct: 794 FMLGEEVKDAFILFGTVQEGGKAMLLCYINKELTKSKSLDAGKIVRELGKYIHGGG-GGQ 852 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P A +GG +A+ V L Sbjct: 853 PFFATAGGKKPEGIIEALEKVKFLL 877 >gi|68536115|ref|YP_250820.1| alanyl-tRNA synthetase [Corynebacterium jeikeium K411] gi|83305843|sp|Q4JVF5|SYA_CORJK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68263714|emb|CAI37202.1| alaS [Corynebacterium jeikeium K411] Length = 887 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 323/921 (35%), Positives = 479/921 (52%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F+E F K GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ Sbjct: 1 MQTHEIRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTNPVE 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 LD RL++TV+ +D+EA ++W K G+ KI R+ DN+WSM GPCGPCSE Sbjct: 116 EGGLGLDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGM 228 I++D+G G G + RYIEIWNLVFM+ E+ K I+ PK +IDTG+ Sbjct: 176 IYYDRGPE-HGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G+ER+A +LQ+ N Y+ DL + +I +++VTG KY + N V RVI DH R+ L+ Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLMLM 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + ARLLG T + + + M +YPE+ + Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I +E++ F KTL+ G + D + + + GDVAF L+DTHG P+D+ Q++ Sbjct: 355 IRAVALAEEKSFLKTLESGSQMFDNWAHEAKERGEDTVPGDVAFSLHDTHGFPIDLTQEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +DI F++ + EQ++RA+A + G ++ + T F GY+ L Sbjct: 415 AAEADLK-VDIDGFHELMAEQKARAKADNNAKKLGHVDQTIYRPFVDNHPTVFTGYENLA 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I++ G +VE A G +V+ D+TPFYAEA Sbjct: 474 D-----------------------EASVLGIIRDGALVETAPEGAAAQVILDRTPFYAEA 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G ++ DVQK + ++VHH V G L + T+D R Q Sbjct: 511 GGQMADRGEMTSTSGAARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS THL+H AL +LG Q GS P LRFD + + +T +L IE+ N + Sbjct: 571 QAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTEHQLNQIEEIANGAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E+A A GA AL G Y VRVV + GG S LCGG HV + + Sbjct: 631 SDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + + ++ ESS+ +G+RRIEA TG + L + + LA+ LK + R++ + Sbjct: 687 VGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVSGLATSLKTPSEELPDRIDALT 746 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + + + Q + I +V ++ + V + +L+++ + Sbjct: 747 AKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAEQLPEGVAAGDLRTLAMDAKN 806 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ S +++ + EK V + A +L + + + G GGG+P MAQ Sbjct: 807 RLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKTFGEKVA-GRGGGKPAMAQ 865 Query: 877 SGGPNGNKADQAIAGVASFLK 897 G + I V S L+ Sbjct: 866 GSGSDAAGISAGIEAVKSALR 886 >gi|291297318|ref|YP_003508716.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279] gi|290472277|gb|ADD29696.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279] Length = 883 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 352/919 (38%), Positives = 517/919 (56%), Gaps = 62/919 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--P--- 56 + IR FL+FF+ GH LPS S++P +DPTL+F N+GM P K F G++ P Sbjct: 1 MKTAEIREKFLQFFESKGHLRLPSFSVVPQDDPTLLFINAGMTPLKPYFLGKKPVFPGHE 60 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + VTT QK VR G D++NVGRTNRH T FEMLGNFSFG YFK+ AI+ AW+ LT Sbjct: 61 GEWYRVTTCQKSVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAIEWAWEFLT 116 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168 K LD R+Y+T+Y +D+EAF+ W + G+ +KI R ++NFW + GP Sbjct: 117 DPKWLGLDPTRIYVTIYKDDDEAFEHWTR-VGVPPEKIHRFDADENFWPQNAPTKGPNGP 175 Query: 169 CGPCSEIFFDQGECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CGPCSEI++D+G + E R++E+WNLVF Q+++++ LPK +ID Sbjct: 176 CGPCSEIYYDRGPAFGSDTWADYYETRESNRFVELWNLVFPQYDRKDGGVLEPLPKPNID 235 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285 TGMGL R+A VLQ+ T+ Y+ D F+ LI ++TG+ YEG + V HRVI +H R+ +F+ Sbjct: 236 TGMGLARVAMVLQDVTDFYETDEFQPLIAKIVELTGISYEGPSSVAHRVIAEHARAVTFI 295 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ++DG+ +N GRGYV+RR++RRA+ + LLG EP M L + MG YPEL + Sbjct: 296 LSDGVHFSNTGRGYVVRRLLRRAVRFGYLLGLREPFMYRLAEVVAQVMGGVYPELKENLE 355 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +++ ++ E+E+F +TL+ G+ LD +L++L + L G AF LYDT+G PLD+ +I Sbjct: 356 GVQKQIKIEEEQFLRTLESGIKRLDAMLANLKPGDTLAGRDAFTLYDTYGFPLDLTIEIA 415 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLL 463 G +D F QALEEQ+ RARA + + + +L YG T+F+GY+ L Sbjct: 416 SEHG-VQVDTEGFEQALEEQQERARAAAAFSKELFKRSNEALAALAADYGGTKFVGYESL 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + VK ++ + +EEA +G +V+VV D+TPFYAE Sbjct: 475 E-----------------------AQAQVKLLLVGEQTIEEAPAGTEVQVVLDRTPFYAE 511 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G +G +++ QK +GIF+H A VE G L+ ++ +D R Sbjct: 512 GGGQVGDAGVLEWEGGWARVSTTQKNPDGIFLHIARVEEGTLKAGSTVRALVDMHRR-DT 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL +LGSHV Q GS + PD LRFD + +PI +L IE VN I Sbjct: 571 EKNHTATHLLHAALRAVLGSHVQQKGSYVGPDRLRFDFSQFEPIAPRDLARIELLVNRWI 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + PV E+A GA AL G KY D VRVVSVE V S LCGG HV TG Sbjct: 631 QADFPVSYTYKPLEEARKEGAMALFGEKYGDVVRVVSVEGAIDNVTSKELCGGCHVRRTG 690 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI IV+E S+ AG+RRIEA+TG A ++ ++L L+ L + +++ RV ++ Sbjct: 691 EIGAFVIVAEESVAAGVRRIEALTGTGATQYVREMLDRLGGLSRELGTTPEHLLERVNKL 750 Query: 764 WEEYRKLQLIHAKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 +E + + K KL L +S + +++ + +++ L+ D L Sbjct: 751 QDELKAREKEIEKLKLDLARAQLGGSAAGISLKEANGYRYLAVKLEGLEAGALRGAADEL 810 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + Q+ ++ + +++ V++ L+R +A + + + V GG GGG +A Sbjct: 811 LDRHQADLVAVGSGQ-----HLVVKVSKKALERGLDAGAVMKKLSAVAGGRGGGRGA-LA 864 Query: 876 QSGGPNGNKADQAIAGVAS 894 Q GG + KA A+ V Sbjct: 865 QGGGFDLEKAFGALEQVLE 883 >gi|330998231|ref|ZP_08322057.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] gi|329568923|gb|EGG50721.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] Length = 871 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 321/919 (34%), Positives = 473/919 (51%), Gaps = 76/919 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F++FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G + Sbjct: 1 MTANEIRDSFVKFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNRPATSKRC 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ L +D Sbjct: 61 TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVDVLKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY TV++ D EA W+K L AD II +DNFW M TGPCGPCS Sbjct: 121 KSNLYATVFEGSPEEGLERDNEAASYWEKF--LPADHIINGNKHDNFWEMGATGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ IEIWNLVFMQ+ ++ Q LP IDTGMG Sbjct: 179 EIHIDLRPEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADQSLEPLPAKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ V+Q K +NYD D+F+ +I+ ++ +Y + V RV+ DHLR+ +F IA Sbjct: 239 FERLCAVMQGKRSNYDTDVFQPIIRVIGDLSDCRYGEDPKKDVAMRVVADHLRTIAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP N GYV+RRI+RRA+ YA LG E M LLP L EMG +YPEL K+L Sbjct: 299 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLPVLVQEMGKSYPELEAQKVL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I + ++ E++ F +TL+ G+ LLD V++ +++G AF L+DT+G PLD+ + I Sbjct: 359 ISKVMKEEEDSFLRTLETGIRLLDRVMAETRASGKTVIDGVEAFTLFDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G+ +D +F+ +++Q+ RAR + W ++E G T+F G+D Sbjct: 419 CRENGMT-VDEETFHAEMQKQKERARNA-----AAVETGDWVVVRE--GETEFKGWDYTE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RKV +K ++V D TPFYAE Sbjct: 471 HECHILRYRKVTQKKQTF----------------------------YQIVLDYTPFYAEM 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G + ++I D +++ + E + +D R Sbjct: 503 GGQVGDRGVLCSEHETIEIVDTKRENNLPVHI---AKTLPEHPEADFMACVDTDLRAASE 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ THLL AL T+LG HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 ANHTCTHLLDQALRTVLGEHVEQKGSLVTPEYLRFDFSHFQKVTDEQLREVERIVNAKIR 619 Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++LP R M E A GA AL G KY DRVRVV S CGG H STG Sbjct: 620 EDLPLQDHRDMPIEKAKELGAIALFGEKYGDRVRVVQFGD------SVEFCGGCHAKSTG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I ++ I+SESS+ AGIRRIEAITG++ + L + L + + +V + + Sbjct: 674 RIGMVKILSESSVAAGIRRIEAITGEKVENMLYTLQDLTNELRTLFNNAP-DVKAAILKS 732 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE L+ + + + + + V I+ + + +K + L+ Sbjct: 733 IEENAILKKQIEESMKEKAAQAKARIVSQAAIVNGVTLYRSILP-MPADLVKDMAFQLRN 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + ++++ + E K + +++++ N + R +AK++ GG GGG+PH A Sbjct: 792 GAEDALVIIGSLH-EGKPMLTAAASDNMVKAHGMNVGKIVREAAKLIQGG-GGGQPHFAT 849 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ Sbjct: 850 AGGKNADGLSAAVDKFVEL 868 >gi|297155787|gb|ADI05499.1| alanyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1] Length = 889 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 325/907 (35%), Positives = 497/907 (54%), Gaps = 62/907 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + Sbjct: 1 MESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT Sbjct: 60 VSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTSVEEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY ED+EA ++W+ + G+ A++I R+ NFWSM GPCGPCSEI Sbjct: 116 GYGLEPEKLWITVYKEDDEAERIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + P +IDTG+GL Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + +I + ++TG+ Y ++ V+ RV+ DH+R+S LI D Sbjct: 235 ERLAMILQGVHNMYETDNLRAVIDKATELTGVAYGAGHDSDVSLRVVADHMRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ R+LG TE ++ L+ + MG YPEL+ + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRILGATELVVGELVDVVLKTMGQQYPELLTDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL G +LD + + +L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTDTKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + + G+T F GY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADTSGSTVFTGYTDTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTIVGLLVDGLPSPAATEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D+G + G +++ DVQ+ G+ VH V+ G + ID + RR ++ Sbjct: 511 GQLADSGRIRLDSGAVVEVRDVQQPVPGVSVHKGTVQVGEVTVGAGAYAQIDIKRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + A L +E +N++++ Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGAVLTDVEQKINEVLS 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ E+A GA A G KY DRVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVTAEVMSMEEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RR+EA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSRLTDLVKGRPEELPEKISGML 745 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + ++ + + + + ++ + V ++ + + +L+ ++ ++ Sbjct: 746 AKLKEAEKEIERFRAEKVLQAAAGLAAGAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +IQ ++ L ++ + +V+ A DL R +AK LGGGG GG+P +A Sbjct: 806 RIQGDRPAVVALFSVANGRPVTVIATNEAARERGLKAGDLVRAAAKALGGGG-GGKPDVA 864 Query: 876 QSGGPNG 882 Q GG N Sbjct: 865 QGGGTNP 871 >gi|256826954|ref|YP_003150913.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641] gi|256583097|gb|ACU94231.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641] Length = 878 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 336/914 (36%), Positives = 492/914 (53%), Gaps = 56/914 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59 + IR +L +F+ G + +PSSSLIP +DP+L+ T++GMV FK F Q+ Y Sbjct: 1 MTTAEIRERYLRYFESKGCKRMPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 59 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TT QKCVR ND+D +G RH +FFEMLGNFSFG YFKE A D E Sbjct: 60 GTTTAQKCVRT----NDIDLIGTDGRHLSFFEMLGNFSFGAYFKEEMCAWALDFSLNELG 115 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + +LY TVY++D+E ++WK + G+ A I ++ DNFW TGPCGPCSE+++DQ Sbjct: 116 LPKEKLYFTVYEDDDETIEIWKNL-GIEASHISKMGEEDNFWRAGPTGPCGPCSELYYDQ 174 Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + G P E +R++E WN VF Q++ Q LPK +IDTGMGLERMA +L Sbjct: 175 GPEVGCGRPDCAPGCECDRFLEYWNCVFTQYDAQEDGTLKPLPKKNIDTGMGLERMAAIL 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q ++N+D D+ + L+ E+++G Y + RV+ DH RS +F+IADGILP+NE Sbjct: 235 QSVSSNFDTDVLRGLVAVGERLSGRSYGASDADDRALRVMADHSRSMTFMIADGILPSNE 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ LLG + + + MGS Y EL++ + LI+ + SE+ Sbjct: 295 GRGYVLRRLLRRAVMKGHLLGIEGAFLGSFVDEIIQVMGSEYAELVENRDLIKRVVASEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERFG TL +G L L L +L+G+VAF L+DT+G PL++ Q+I G +D+ Sbjct: 355 ERFGSTLRQGRAYLQEALDGLS-GGLLSGEVAFTLHDTYGFPLEVTQEICAESG-IEVDV 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTT---EKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 FN ++EQRSRAR + + +L E+ GAT F GYD Sbjct: 413 EQFNHLMDEQRSRARRATQDDAEAAWSTYDGSMAALLEQVGATVFTGYDE---------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V+A+++ GE V +G+ VV D++PFYAE GGQ+ DTG Sbjct: 463 -------------NKSAGHVRALLRDGESVCTLSAGEAGCVVLDRSPFYAEMGGQVADTG 509 Query: 533 CAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 ++TDV+ G+ VH+ VE+G + ++ +ID R ++ NH+AT Sbjct: 510 TITSPDGASCARVTDVKAPESGLIVHYVQVEQGSFTIDDEVIGSIDVARRERIRRNHTAT 569 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH LS +LG+HV Q GS + P+ LRFD TH + I A L IE+ N +I + PV Sbjct: 570 HILHKVLSEVLGNHVKQAGSYVAPNRLRFDFTHFEAIDRATLDEIENVANRVIMEAHPVH 629 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T ++A G AL G KY + VRVV ++ S LCGGTHV +T EI + I Sbjct: 630 TYETTLDEAREQGVTALFGEKYGEVVRVVDIDG-----FSRELCGGTHVRNTSEIGFVKI 684 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE S A +RRIEA+T A ++ ++L+ A+ V +V R E+ + L Sbjct: 685 VSEQSTGANMRRIEAVTSFDALAYTDRMRDELRQTAAVFGVPLFDVNERAAIATEQLKTL 744 Query: 771 QLIHAKRKLQLNVEDL--SCHKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 Q + K D+ K A + + + +D+ L++ D + + Sbjct: 745 QAQAKRAKKIAVASDIRTLVDKAISTSRAGYPVLIYRLDGMDAGSLRNTWDIARAHLGET 804 Query: 824 IIMLVGISKEKKASVL-IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++ E K ++ + F+A + + A + GGG GG+P MAQ+GG + Sbjct: 805 CAVVLASDNEGKPLIMAAGTDAAVAAGFDAGAIIKEVAGAISGGG-GGKPSMAQAGGKDP 863 Query: 883 NKADQAIAGVASFL 896 D+A+ L Sbjct: 864 AGLDEALDIARRML 877 >gi|311739532|ref|ZP_07713367.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305348|gb|EFQ81416.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 897 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 326/925 (35%), Positives = 487/925 (52%), Gaps = 66/925 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61 IR F + F +GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + Sbjct: 6 THEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKGLA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 65 TSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVDEG 120 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSEI+ Sbjct: 121 GFGLDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSEIY 180 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G G G + RY+EIWNLVFMQ E+ + LPK +IDTG+G+ Sbjct: 181 YDRGPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGLGI 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLI 286 ER+A +LQ+ N Y+ DL + +I +E++TG Y + + RV+ DH R+ LI Sbjct: 240 ERVACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMMLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + Sbjct: 300 LDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNRER 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDI 400 I +E++ F KTL+ G L D + L ++L G+ AF+L+DT+G P+D+ Sbjct: 360 ILRVAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPIDL 419 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D+ FN A+ EQR RA+A + G T+ + T F G+ Sbjct: 420 TLEMAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGF 478 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + L + V +V+ GE V++ G++VEV+ D TP Sbjct: 479 EELTSD-----------------------ARVIGLVRGGEKVDQVREGEQVEVILDHTPL 515 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAEAGGQ+ D G + L++ DVQK + ++VH A V G L MS+ +D Q R Sbjct: 516 YAEAGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQWR 575 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + HSATHL+H AL +LG Q GS P LRFD +++ ++ A+L+ I N Sbjct: 576 HGATQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALITN 635 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N V T + E+A A GA AL G Y VRVV + GG S LCGGTHV+ Sbjct: 636 QAIDSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTHVA 691 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 S+ EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV ++ R+ Sbjct: 692 SSAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERI 751 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMD 814 ++ E+ + + + Q S I ++ + +L++V Sbjct: 752 AQLSEKLKAAEKEIETLRKQQLAARASEFVGAAKDINGFKVIALTLPEGTTGGDLRTVAT 811 Query: 815 ALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 L+ ++ + +I+L K K + + + + D+ + + + G GGG+P Sbjct: 812 DLRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGGKP 870 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 MAQ G A++ A V L+ Sbjct: 871 DMAQGSGSTAAGAERGFAAVKDMLE 895 >gi|33519641|ref|NP_878473.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus] gi|81666648|sp|Q7VQG3|SYA_BLOFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33517304|emb|CAD83689.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus] Length = 891 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 346/914 (37%), Positives = 515/914 (56%), Gaps = 53/914 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R FL+FF K H+++PSSSL+P ND TL+FTNSGM FK+IF G KP Y+ V Sbjct: 3 KSIDVVRQEFLDFFHKQEHQVVPSSSLVPKNDQTLLFTNSGMNQFKDIFLGLVKPSYKRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119 T Q+C+RAGGKHNDL+NVG T H TFFEMLGNFSFG YFK+ AIQ AW+LLT F Sbjct: 63 VTAQRCMRAGGKHNDLNNVGYTECHLTFFEMLGNFSFGDYFKDDAIQFAWELLTDSNWFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + ++++T + ED+E++ +W K G+S +I++I DNFW M GPCGPC Sbjct: 123 LSKDKIWVTTHIEDDESYNIWVKQVGISTKRIVKIGNKNSDLYDSDNFWQMGNIGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G + G PG + G RYIEIWNLVFMQF +Q LP +S+DTGMGLE Sbjct: 183 SEIFYDFGSDLKGKPPGYMQGLGSRYIEIWNLVFMQFNRQLNDRLIDLPMLSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ +LQ +NY ID+FK+LI + +K E N + VI DH+R+ FLI DG++ Sbjct: 243 RITAILQGVHSNYLIDVFKNLIVDISNIMKVK-EYINNRSLYVIADHIRACVFLIKDGVV 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEG+GYVLRRI+RR++ + R LG + + L+ + M L K LIE+ L Sbjct: 302 PSNEGQGYVLRRIIRRSVRHGRKLGVNDIFLYKLVNLVIVHMNYVSNILYDQKDLIEQIL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +E++ F TL +GL LL+ L +L +D+IL+G++AF+LY T+G PL++ +DI C R + Sbjct: 362 FNEEKLFNNTLKKGLELLEKSLKNLNQDKILSGEIAFQLYTTYGFPLELTKDICCERNIK 421 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + F+Q + +R ++ S + L + F+GY Sbjct: 422 -VDQLEFDQIMLTERRNSKRLSQFHKNFNN----IILSSYAKTSTFVGY----------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGD 530 S + A++Q E++ + Q+ V+ D TPFY E+GGQ+GD Sbjct: 466 ------------KCFSCQSKIIALLQDNELINKMCDVDQESMVILDITPFYGESGGQIGD 513 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G G+ ++ + +K I VH ++ GI + ++ R+ +S+NHS+T Sbjct: 514 SGYLKGECGVFKVKNTKKYG-QIIVHIGVLISGIFLIGEQVFAQVNRLKRKDISVNHSST 572 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILGSHV+Q GS I RFD +H IT ++ +E+ +N I NL V Sbjct: 573 HLLHSALLKILGSHVTQQGSLINDKYFRFDFSHYNAITITQINEVENLINQQIWDNLLVT 632 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 IM E A GA LL +Y ++VRV+ + G S LCGGTHVS+T EI L I Sbjct: 633 ENIMLMESARNIGAIMLLHKQYTEKVRVIQI-----GDCSIELCGGTHVSNTNEIGLFII 687 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 E I +G+RRIEA+T A S + + + ++++A + N++ + E Y KL Sbjct: 688 TKEFGIGSGVRRIEAVTKNAALSVIQNKKKLIQNIAQIAQSDDVNLLNVIHEFKARYEKL 747 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + ++ + + I +V + + + ++S L ++ L+ +QSGI+ Sbjct: 748 DREIKLLNSKQEIQKVLSLVREVYYIKNVRVLVNHVKNMESSSLFKMVKLLKHYLQSGIV 807 Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +L+ I K A ++I +T+DL++ R A+DL + + + G GGGR AQ N Sbjct: 808 VLINIRKNNIAHIVISITKDLVECNRIYAIDLIQYIIRSVKNGKGGGRFDFAQLNINNVK 867 Query: 884 KADQAIAGVASFLK 897 + + + S L Sbjct: 868 NVSELVIQIQSLLN 881 >gi|327402220|ref|YP_004343058.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823] gi|327317728|gb|AEA42220.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823] Length = 871 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 344/930 (36%), Positives = 502/930 (53%), Gaps = 95/930 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 V IR F +FF GH+++PS+ ++ NDPTLMFTN+GM FK+ F G P + V Sbjct: 1 MTVHEIRKQFFDFFASKGHQIVPSAPMVVKNDPTLMFTNAGMNQFKDFFLGNAVPKNRRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + + Sbjct: 61 ANSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKEEAITWAWELLTEVYKIP 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ DE E++ +WK+ ++ D+II + DNFW M +TGPCGPC+ Sbjct: 121 KDRLYVTVFEGDEKDGVPKDQESYDIWKRF--IAEDRIIMASKKDNFWEMGDTGPCGPCT 178 Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +E+ + IEIWN VFMQF ++ LP +DTGMG Sbjct: 179 EIHVDNRPATERAKEDGKKYVNEDHPQVIEIWNNVFMQFNRKADGSLEPLPATHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 LER+A LQ+KT+NYDIDLF+ LIQ EQV+G KY + RVI DH+R+ +F IA Sbjct: 239 LERLAMTLQDKTSNYDIDLFQTLIQHMEQVSGKKYGENETTDIALRVIADHVRAIAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y LG EP + L L MG + ELI+ L Sbjct: 299 DGQLPSNTGAGYVIRRILRRAVRYGYQTLGLKEPFLSGLSVVLGKVMGDPFSELIKQGEL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404 +E+ +R E+ F +TL++GL +D +++ ++ IL G F+LYDT G P+D+ I Sbjct: 359 VEKVIREEELSFFRTLEQGLKRMDNLIAQARKTRETILQGPAVFELYDTFGFPIDLTSLI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +D F+ L++Q++R+RA + E + + +K +F+GYD L Sbjct: 419 ARE-NKLLVDEDGFDTELQKQKARSRAA------TSIETDDWVVLKKDSEEEFVGYDHLT 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + + RKV ++ ++VF+ TPFYAE Sbjct: 472 TTVEIVKYRKVKQKQRSF----------------------------YQLVFNLTPFYAEG 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GDTG L I D +K+ I V+ + + ++ ++RR + Sbjct: 504 GGQVGDTGTISNANESLTIFDTKKENGLIVHL---VDELPEKIDGQFTARVNEESRRLSA 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLHHAL T+LG+HV Q GS + P+ LRFD +H +T E+ IE V D I Sbjct: 561 SNHSATHLLHHALRTVLGAHVEQKGSLVNPNYLRFDFSHFSKVTDEEMAKIEAIVIDGIR 620 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 QNL + R + + A GA AL G KY D VRV+ S LCGGTHV +TG Sbjct: 621 QNLSLEESRNVPIDAAQEMGAMALFGEKYGDTVRVIKFGD------SIELCGGTHVQNTG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I L I SES++ AGIRRIEAIT + Q+ KLKS+ LK + +V VE++ Sbjct: 675 QIGLFKIQSESAVAAGIRRIEAITNVAVEGYYADQESKLKSVNELLK-NPKDVSKAVEDL 733 Query: 764 WEEYRKLQLIHAKRK---LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQK 818 + +LQ K +L DL I D +++ +I ++++ +K ++ L+ Sbjct: 734 ISKNNQLQKQVENFKKEHAKLVKADLKTKIISKGDFSYLDALI-DLNAGSVKDILFQLKG 792 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGG 866 ++ + + ++G +E K ++ ++V E L+ +NA +L + A ++ Sbjct: 793 EVPN-LFAVIGSKEEDKCAISVLVDESLVSSKGWNAGNLVKSVASLIQGGGGGQAFFA-- 849 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +GG N N +AI V + Sbjct: 850 ---------TAGGKNANGLKEAIEKVKQEI 870 >gi|328955592|ref|YP_004372925.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2] gi|328455916|gb|AEB07110.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2] Length = 885 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 323/910 (35%), Positives = 492/910 (54%), Gaps = 51/910 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + S IR +FL+FF++ G +++PSSSL+P DP+L+ N+GM FK + G++ Sbjct: 8 KSTSEIRASFLDFFERRGCKVVPSSSLLPE-DPSLLLANAGMNQFKQYYLGKKTMREIGA 66 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+R D+D +G RH +FFEMLGNFSFGG KE+A A++ T+ L Sbjct: 67 ASCQKCIRT----TDIDIIGSDGRHLSFFEMLGNFSFGGVTKEQACAWAYEFSTEVLKLA 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ T++DEDEEA ++W+ + G+S D I R+ DNFW+ TGPCGPCSEI++DQGE Sbjct: 123 PHRLHFTIFDEDEEAHEIWRAL-GVSEDHISRLGAEDNFWAAGPTGPCGPCSEIYYDQGE 181 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P E +RY+E WNLVF ++++Q LP ++DTGMG+ER+A ++Q Sbjct: 182 AFGCGSPTCAPGCECDRYLEFWNLVFTRYDRQADGSMPELPHRNLDTGMGIERVAAIVQH 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 ++NY+ D+ LI +++G Y + + R+I DH R+++F++ADGI P+NE Sbjct: 242 ASSNYEGDVLSGLIALGVEISGRAYDPLSYQGDSRSLRIIADHSRAATFMLADGIRPSNE 301 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + RLLG + ++ MG Y ELI+ + L+ L SE+ Sbjct: 302 GRGYVLRRLIRRAVMHGRLLGIEGAFLSRFARSVIETMGPHYSELIEHRDLVVSFLASEE 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF T+D G L+ L+ L + + L+G VAF L+DT G P+D+ +I RG ID Sbjct: 362 ERFFATIDNGSAFLEDALAGLARGDTLDGRVAFTLHDTFGFPIDLTIEIARDRG-ISIDE 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ A+ EQR RARA + + + +W L + T F+GYD Sbjct: 421 EGFDNAMTEQRERARAQVRDVAWSSFDSVWIGLADTISPTAFVGYDNYE----------- 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + AI+ + V+ + Q E+V D+TPF+ E GGQ+GDTG + Sbjct: 470 ------------AEARIVAIILEDRSVDAVEADQVAEIVLDRTPFFGERGGQIGDTGTLL 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLL 593 + + + + G R +++ ID R ++ NH+ATHLL Sbjct: 518 RPDGGTAFVVERTEWRERILCSHVGRVGAERLSVGDTVIAQIDVARRERIRRNHTATHLL 577 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD TH T+ +L ++ED VND I ++LPV T + Sbjct: 578 HAALRGVLGEHVAQEGSFVDDERLRFDFTHFSACTADQLAAVEDRVNDWIFEDLPVATDV 637 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E+A +SGA AL KY+ RVRVVS G S LCGGTH +T ++ + I+SE Sbjct: 638 MDLEEAKSSGALALFSEKYSSRVRVVSC-----GTASRELCGGTHAHTTSQLGIFKILSE 692 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 SS+ RRIEA++ ARS + L A L+V +V RV + R+ Sbjct: 693 SSVGTNTRRIEAVSSAGARSFFRRRLALLDETAEKLRVRPEDVPARVSALERSLRETSDK 752 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI-IML 827 + + + + + I +D ++L+ D ++K+ + +L Sbjct: 753 LRRALVGDTSDAIDRAIGEAVDAGGYALVVARIDGLDPQDLRGAWDTIRKRSDGPVAAVL 812 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G + ++ ++ ED + F+ L + A + GG GGGRP MAQ+GG D Sbjct: 813 AGATSKRTPVLIAAGDEDAVHAGFDGAALIKRIAPKIAGG-GGGRPAMAQAGGKETGGID 871 Query: 887 QAIAGVASFL 896 A++ + L Sbjct: 872 AALSMARTEL 881 >gi|313885025|ref|ZP_07818777.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619716|gb|EFR31153.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 883 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 323/919 (35%), Positives = 494/919 (53%), Gaps = 60/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF + H++ PS+SLIP NDPTL++ NSG+ K F G E P Sbjct: 1 MKELTSAQIRQMYLDFFAEKNHDVKPSASLIPINDPTLLWINSGVATLKKYFDGTEVPAN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QKC+R ND++NVG T RHHT FEMLGN+S G YFKE AI AW+ LT K Sbjct: 61 PRITNAQKCIRT----NDIENVGVTARHHTLFEMLGNWSIGDYFKEEAIAWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LY T Y ED + ++WK+ + D ++ + DNFW + GPCGP +EIF Sbjct: 117 WMGFEPELLYATYYPEDTDTPEIWKQQPNFNPDHLVPV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ER++EIWNLVF +F LP ++DTGMGLE Sbjct: 174 YDRGEAYNNLAEDDPENYPGGENERWLEIWNLVFSEFNHMPDDTYQPLPNKNVDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGNNIVNHRVIVDHLRSSSFLIAD 288 RM +V+Q+ N++ DLF +I+ E +T + G N V+ +VI DH+R+ SF I+D Sbjct: 234 RMTSVVQDTPTNFETDLFLPIIKQIEGLTDGIVYEEAGANKVSFKVIADHIRAVSFAISD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGY+LRR++RR++ + R LG + + L+P + MG Y EL + ++ Sbjct: 294 GALPSNEGRGYILRRLIRRSVMHGRRLGIKDKFLAQLVPTIAQIMGQFYSELQEKVEFVQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILC 406 L SE++RF +T++ G L ++ L +E+ + GD AFKLYDT G PL++ Q+ Sbjct: 354 SVLASEEDRFHETIEAGEDHLVSIIESLKTEEVYEIPGDQAFKLYDTFGFPLELTQEE-A 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D F +E+QR RAR S + F+ + + F+GYD L Sbjct: 413 ELRGFSVDTQGFEAEMEQQRQRARQARSKEESMNVQSTVFT--DIHTEYDFVGYDSLVS- 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ VKAIV + E V+ Q V F+++PFYAE GG Sbjct: 470 ----------------------NATVKAIVFEDESVQNLAKNQIGWVFFNRSPFYAEMGG 507 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-AIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + +KA H + + S L +D ++R + Sbjct: 508 QIADKGLIMDGNDEVGRVLDVQKAPNGQAMHKVEALTMPINLDQSYTLQVDPKHRTLTNQ 567 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + PD LRFD +H +T+ E+K++ED VN I Sbjct: 568 NHTATHLLHRALKDVLGDHANQAGSYVGPDRLRFDFSHFGKMTAEEIKAVEDKVNAFIEA 627 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L V T M ++A A GA AL G KY D VRVV++ S LCGGTHV++T +I Sbjct: 628 SLAVNTTEMPIDEAKALGAMALFGEKYGDVVRVVNISN-----ESIELCGGTHVANTNQI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764 ++SE+ I AGIRRIEA+TGQ A ++ Q+ L + LKVSQ + +V R++++ Sbjct: 683 GTFKLLSETGIGAGIRRIEALTGQAAFNYYRDQEAILHQIQDRLKVSQTDMLVNRIDQMQ 742 Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E ++ + ++ ++ V++++ + + + ++ + D ++K Sbjct: 743 AELKEAHAQIESLQAKVMQAASDKLFDEVKEVGAVSYIALSLKDQSADAMRQLGDIWKQK 802 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + ++++ + EK +++ + + A DL + AK + GG GGG+P MAQ+GG Sbjct: 803 ANADLLIVAADNGEKANLLVLANDQAIDKGVKAGDLIKALAKYVQGG-GGGKPQMAQAGG 861 Query: 880 PNGNKADQAIAGVASFLKK 898 N + + + ++K Sbjct: 862 KNPVGIPELMESIDLEIEK 880 >gi|148543768|ref|YP_001271138.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|227363252|ref|ZP_03847384.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3] gi|325682140|ref|ZP_08161658.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A] gi|148530802|gb|ABQ82801.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|227071708|gb|EEI09999.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3] gi|324978784|gb|EGC15733.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A] Length = 884 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 319/918 (34%), Positives = 499/918 (54%), Gaps = 63/918 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W++ G++ D + I DNFW + + GP GP +EIF+D+G Sbjct: 124 DPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + E RY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 180 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F I DG LP Sbjct: 240 IFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I + Sbjct: 300 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASVIE 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF TL+ GL LL+ V++ + + ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDEGL 419 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W S KE ++++GY L Sbjct: 420 T-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVD--- 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528 ++ V + G+ +EA G K +E++FD TPFYAE GGQ+ Sbjct: 473 -------------------NAKVIGLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGGQV 513 Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG I + ++ + A H + ++ L +D ++ NH Sbjct: 514 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPIKKGARYKLVVDRIRHLKIEKNH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E+ VN+ I + + Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIWKEI 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A GA AL KY D+VRVV + G ++ CGG HV +T E+ L Sbjct: 634 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNELGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 IVSE + AG+RRIEA+T A L +D+ L A+ LKV V +VE + E Sbjct: 689 FKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETLQNE 748 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++ Q + + ++ + + + + ++ + +L+ + DA + K Sbjct: 749 LKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADAWRSKAL 808 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L S + KA++L+ V++D A DL + A + GG GGGRP++AQ+GG Sbjct: 809 SDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQAGGK 866 Query: 881 NGNKADQAIAGVASFLKK 898 N +A++ +L K Sbjct: 867 NPAGIKEALSQAKGYLDK 884 >gi|184153174|ref|YP_001841515.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112] gi|183224518|dbj|BAG25035.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112] Length = 885 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 320/926 (34%), Positives = 500/926 (53%), Gaps = 69/926 (7%) Query: 1 MS------NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE 54 M N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ Sbjct: 1 MMKELKKLNSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKV 60 Query: 55 KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 P +T+ QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LL Sbjct: 61 VPDNPRMTSSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELL 116 Query: 115 T--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 T + F D RLYIT Y +D +A+ W++ G++ D + I DNFW + + GP GP Sbjct: 117 TSDEWFGFDPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPD 172 Query: 173 SEIFFDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 +EIF+D+G+ E RY+EIWN+VF QF + LP +IDTG Sbjct: 173 TEIFYDRGQEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTG 232 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSF 284 MGLER+ ++ + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F Sbjct: 233 MGLERVVSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITF 292 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ Sbjct: 293 AIGDGALPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNA 352 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQ 402 I + SE++RF TL+ GL LL+ V++ + + ++G AFKLYDT+G P+++ + Sbjct: 353 DYIASVIESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTK 412 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + GL +D F A+ EQ++RAR + G G +W S KE ++++GY Sbjct: 413 EYAEDEGLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYT 468 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPF 520 L ++ V + G+ +EA G K +E++FD TPF Sbjct: 469 DLTVD----------------------NAKVIGLAHDGQQADEAQPGDKNIELIFDVTPF 506 Query: 521 YAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 YAE GGQ+ DTG I + ++ + A H + ++ L +D Sbjct: 507 YAEMGGQVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPIKKGARYKLVVDRIR 566 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E+ V Sbjct: 567 HLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMV 626 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I + +PV T + + A GA AL KY D+VRVV + G ++ CGG HV Sbjct: 627 NEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHV 681 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVG 758 +T E+ L IVSE + AG+RRIEA+T A L +D+ L A+ LKV V Sbjct: 682 KNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPH 741 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813 +VE + E ++ Q + + ++ + + + + ++ + +L+ + Sbjct: 742 QVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLA 801 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 DA + K S +++L S + KA++L+ V++D A DL + A + GG GGGRP Sbjct: 802 DAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRP 859 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 ++AQ+GG N +A++ +L K Sbjct: 860 NLAQAGGKNPAGIKEALSQAKGYLDK 885 >gi|242092594|ref|XP_002436787.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor] gi|313471753|sp|C5Z7K4|SYAP_SORBI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|241915010|gb|EER88154.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor] Length = 961 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 330/928 (35%), Positives = 497/928 (53%), Gaps = 72/928 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +IR FLEF+ GH++LPSSSL+P +DPT++ T +GM+ FK IF G+E T Sbjct: 64 SGDAIRRRFLEFYAARGHKILPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKEPRRVPCAT 122 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT RH TFFEMLGNFSFG YFK+ A AW+L TKE+ L Sbjct: 123 TSQKCIRT----NDIENVGRTARHQTFFEMLGNFSFGDYFKKEATAWAWELATKEYGLPA 178 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+I+V+++D EAF +W G+ ++I R+ DNFW+ TGPCGPCSEI++D Sbjct: 179 ERLWISVFEDDNEAFDIWHNEVGVPKERIKRMGAEDNFWTSGATGPCGPCSEIYYDFYPE 238 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G + R+IE +NLVFMQ+ +++ L + +IDTGMGLERMA +LQ+ N Sbjct: 239 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 297 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + + Y + N ++I DH+R+ +L++DG++P+N GRGY Sbjct: 298 NYETDLIFPIIEKAASMAMVSYAKTDDATKTNLKIIGDHMRAVVYLVSDGVIPSNIGRGY 357 Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 V+RR++RR + RL+G + L + + P++ + I L Sbjct: 358 VVRRLIRRVVRMGRLIGIRGDGHGNSEGAFLPSLAEVVISLSTEIDPDVESRRRSILGEL 417 Query: 352 RSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + E+ RF +TL+RG LLD +L + G L+G F LYDT+G P++I +I Sbjct: 418 QREELRFVQTLERGEKLLDELLDGAVLSAGNNGDKPSLSGKDLFLLYDTYGFPVEITAEI 477 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 RG+ +DI F+ +E QR +++A + + + + T F+GYD L Sbjct: 478 ASERGVT-VDIEGFDIEMENQRKQSQAAHNVVKLSVGNET--EIIKSIPDTVFLGYDSL- 533 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S++V+ ++ G V E G +VE++ D+TPFYAE+ Sbjct: 534 ----------------------SASAVVRGLLVNGNPVNEVSEGSEVEILLDRTPFYAES 571 Query: 525 GGQLGD-------TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 GGQ+GD G ++I DVQK IFVH +++G + + +D Sbjct: 572 GGQVGDNGFLYVNGGEDRSQAAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEVDACVDA 631 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R+ +H+ATHLL AL +++GS SQ GS + D LRFD +P++ EL IE Sbjct: 632 KLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDRLRFDFNFHRPVSEGELTRIEL 691 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I+ + T++M +DA +GA A+ G KY ++VRVV V S LCGGT Sbjct: 692 LVNQWISNAAHLETKVMALQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSLELCGGT 746 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HVS+T EI I+SE I +GIRRIEA+ G ++ +D ++ L S LKV +V Sbjct: 747 HVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFIDYVCARDNYMRRLCSSLKVKAEDVN 806 Query: 758 GRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 GRVE I EE R L+ A K + + +V + + +VD+ LK Sbjct: 807 GRVETILEELRATRNEVSSLRSKIAVLKAASLASKATTVEPQNVRIVVENMGDVDADGLK 866 Query: 811 SVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868 S + L +Q ++L + K S++ + ++ A AK+ GGGG Sbjct: 867 SAAEYLIGTLQDPAAVILGSSPGDGKVSLVAAFSPAVVKMGLQAGKFVGGIAKLCGGGG- 925 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+P+ AQ+GG A+ + + Sbjct: 926 GGKPNFAQAGGRKPENLPDALEKARAEI 953 >gi|296139683|ref|YP_003646926.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162] gi|296027817|gb|ADG78587.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162] Length = 890 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 325/921 (35%), Positives = 481/921 (52%), Gaps = 63/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F + F K GH +PS+SL+ NDP +F +GMVPF F GQ+ P Y+ Sbjct: 1 MQTHEIRKRFTDHFVKAGHTQVPSASLV-LNDPNQLFVIAGMVPFVPYFLGQQTPPYERA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFK AI+ AW LLT Sbjct: 60 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKRDAIRFAWSLLTNPVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F +D +RL+ TVY +D+EA LW ++ + ++I R DN+WSM GP GPCSEIF Sbjct: 116 GFGMDPQRLWSTVYLDDDEARDLWLEVGQVP-ERIQRRGMKDNYWSMGIPGPAGPCSEIF 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ E+ + LPK +IDTGMG+ Sbjct: 175 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGQGGGKENFEILGELPKKNIDTGMGI 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N YD DL + +I ++ +TG +Y + RVI DH R++ LI Sbjct: 234 ERVAFLLQGVDNVYDTDLLRPVIDRAQDLTGQRYNAGDPEHDRLFRVIADHTRTAVMLIE 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + ARLLG T M + + M +YP L I Sbjct: 294 DGVNPGNDGRGYVLRRLLRRVVRSARLLGATGETMGVFVDTVIATMSPSYPSLADDAQRI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ F KTL++G+ L + +L+GD AF L+DT+G P+D+ ++ Sbjct: 354 RTVATGEEAAFLKTLEQGITLFGNAVDSTKSAGKTVLSGDDAFTLHDTYGFPIDLTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D F + EQR RA+ + S + F G T+F G+D L Sbjct: 414 SEAGL-QVDEDGFRALMAEQRQRAKDDANSRKSALADLSVFREFLDRGPTEFTGFDELVS 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + V +V+ G V G VE+V D++P YAEAG Sbjct: 473 D-----------------------ARVLGLVKDGVRVPVVHQGDDVEIVLDRSPLYAEAG 509 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G ++ +TDVQ+ A+ ++ H V G + ++ + +D +R + Sbjct: 510 GQLADIGTITTAAGAQIVVTDVQRVAKTLWRHQGTVAVGEVSEGDAVTVAVDAGHRHGST 569 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS THL+H AL +LG + Q GS P LRFD S ++ + IE N+ + Sbjct: 570 QGHSGTHLVHAALRQVLGPNAVQAGSLNRPGYLRFDFRWSGGLSEDQRTDIERVTNEAVQ 629 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T++ + E A SGA AL G Y D+VRVV + GG S LCGGTHV+S+G Sbjct: 630 ADYDVHTQVTDLETAKKSGAMALFGENYGDQVRVVEI----GGPFSMELCGGTHVASSGL 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + + ++ ESS+ +G+RR+EA G ++ +L + + +L S LKV +V GRVE + Sbjct: 686 VGPVTLLGESSVGSGVRRVEAYVGLDSQKYLAKERALVSALTSSLKVPAEDVPGRVESLV 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + K + Q + LS ++ V ++ S V + EL+S++ L+ Sbjct: 746 SRLKDAEKELEKLRAQAALSALSELASSPDRVGAVRLVAAQAPSGVAAGELRSLVTQLKG 805 Query: 819 KIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ + +I L + E K ++ + D A D+ + +A + GG GGG+ MA Sbjct: 806 RLGAEAAVIALFAVDGE-KVPFVVAANDAAQDLGVKAGDVVKAAAPAV-GGRGGGKADMA 863 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q G + + A+A V + + Sbjct: 864 QGAGSDASGMGAALAAVRAEV 884 >gi|227544204|ref|ZP_03974253.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A] gi|300908199|ref|ZP_07125665.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112] gi|227185840|gb|EEI65911.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A] gi|300894626|gb|EFK87982.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112] Length = 895 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 319/918 (34%), Positives = 499/918 (54%), Gaps = 63/918 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 19 NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 78 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 79 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 134 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W++ G++ D + I DNFW + + GP GP +EIF+D+G Sbjct: 135 DPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEIFYDRG 190 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + E RY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 191 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 250 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F I DG LP Sbjct: 251 IFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGALP 310 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I + Sbjct: 311 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASVIE 370 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF TL+ GL LL+ V++ + + ++G AFKLYDT+G P+++ ++ GL Sbjct: 371 SEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDEGL 430 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W S KE ++++GY L Sbjct: 431 T-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVD--- 483 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528 ++ V + G+ +EA G K +E++FD TPFYAE GGQ+ Sbjct: 484 -------------------NAKVIGLAHDGQQADEARPGDKNIELIFDVTPFYAEMGGQV 524 Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG I + ++ + A H + ++ L +D ++ NH Sbjct: 525 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPIKKGARYKLVVDRIRHLKIEKNH 584 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E+ VN+ I + + Sbjct: 585 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIWKEI 644 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A GA AL KY D+VRVV + G ++ CGG HV +T E+ L Sbjct: 645 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNELGL 699 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 IVSE + AG+RRIEA+T A L +D+ L A+ LKV V +VE + E Sbjct: 700 FKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETLQNE 759 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++ Q + + ++ + + + + ++ + +L+ + DA + K Sbjct: 760 LKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADAWRSKAL 819 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L S + KA++L+ V++D A DL + A + GG GGGRP++AQ+GG Sbjct: 820 SDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQAGGK 877 Query: 881 NGNKADQAIAGVASFLKK 898 N +A++ +L K Sbjct: 878 NPAGIKEALSQAKGYLDK 895 >gi|194468332|ref|ZP_03074318.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23] gi|194453185|gb|EDX42083.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23] Length = 884 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 318/918 (34%), Positives = 499/918 (54%), Gaps = 63/918 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W++ G++ D + I DNFW + + GP GP +EIF+D+G Sbjct: 124 DPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + E RY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 180 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F I DG LP Sbjct: 240 IFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I + Sbjct: 300 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASVIE 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF TL+ GL LL+ V++ +++ ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEDRFSATLNGGLNLLNNVIAEAKENKTNEIDGRTAFKLYDTYGFPIELTKEYAEDEGL 419 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W S KE ++++GY L Sbjct: 420 T-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVD--- 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528 ++ V + G+ +EA G K +E++FD TPFYAE GGQ+ Sbjct: 473 -------------------NAKVIGLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGGQV 513 Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG I + ++ + A H + ++ L +D ++ NH Sbjct: 514 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTTPIKKGARYKLVVDRIRHLKIEKNH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E+ VN+ I + + Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIWKEI 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A GA AL KY D+VRVV + G ++ CGG HV +T E+ L Sbjct: 634 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNELGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 IVSE + AG+RRIEA+T A L +D+ L A+ LKV V +VE + E Sbjct: 689 FKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETLQNE 748 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++ Q + + ++ + + + + ++ + +L+ + D + K Sbjct: 749 LKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADTWRSKAL 808 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L S + KA++L+ V++D A DL + A + GG GGGRP++AQ+GG Sbjct: 809 SDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQAGGK 866 Query: 881 NGNKADQAIAGVASFLKK 898 N +A++ +L K Sbjct: 867 NPAGIKEALSQAKDYLDK 884 >gi|218258080|ref|ZP_03474507.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii DSM 18315] gi|218225799|gb|EEC98449.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii DSM 18315] Length = 875 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 336/920 (36%), Positives = 484/920 (52%), Gaps = 76/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D+EA W+K L D II +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADSSLEPLPARVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + V RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTSYGKDKQQDVAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + +++G AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKNVISGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ +I F+ +++Q+ RAR ++ W LKE G F+GYDL Sbjct: 419 ILRENGMEA-NIDEFDVEMQKQKDRARNAAV-----IETGDWVVLKE--GGCNFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R++ + + ++V DQTPFYAE Sbjct: 471 ECDAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D + + D +++ A + ++ I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDETIDVIDTKRENNLPVHLVA---KLPKDVTVTFTAKINEKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V++ I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGN------SIELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L +V ESSI AG+RRIEA+T + A ++ + L+ L + + N+ +++ Sbjct: 674 GMIGSLRVVGESSIAAGVRRIEAVTAEGAENYTFMLQDSLRELRAMFN-NVPNLSQTIKK 732 Query: 763 IWEEYRKLQLIH---AKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817 EE +L+ K K+Q +DL + V + E + +K + ++ Sbjct: 733 AIEENAELKKQVGDYLKEKVQQLKKDLIAKAVERNGVKVVVFR-GEANVDAIKDLAFQIK 791 Query: 818 --KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874 + + GI +K +++++++E L+ + NA L + +AK++ GG GGG+PH Sbjct: 792 GESNTDEKVFFVAGIKDGEKCALMVMLSEQLVSEGLNAGKLVKDAAKLIQGG-GGGQPHF 850 Query: 875 AQSGGPNGNKADQAIAGVAS 894 A +GG N +A+ + Sbjct: 851 ATAGGKNVAGLGEAVEHILD 870 >gi|120434599|ref|YP_860290.1| alanyl-tRNA synthetase [Gramella forsetii KT0803] gi|205830059|sp|A0LXX3|SYA_GRAFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117576749|emb|CAL65218.1| alanyl-tRNA synthetase [Gramella forsetii KT0803] Length = 871 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 334/920 (36%), Positives = 482/920 (52%), Gaps = 73/920 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FLEFF+ H ++PS+ ++ +DPTLMFTN+GMV FK F G V Sbjct: 1 MKSQDIRKQFLEFFKSKSHTIVPSAPMVLKDDPTLMFTNAGMVQFKEFFLGNSVAKSNRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + + Sbjct: 61 TDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWELLTEVYKIS 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 LY++V++ D EA +LWKKI + ++II DNFW M + GPCGPC Sbjct: 121 PENLYVSVFEGSDDRDDLGLDTEALELWKKI--VPEERIIYGNKKDNFWEMGDQGPCGPC 178 Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + +EIWNLVFMQ+ ++ + LP IDTGM Sbjct: 179 SEIHIDIRSEEEKAKTPGRDLVNMDHPQVVEIWNLVFMQYNRKANGDLEELPAKHIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ VLQ +NYD D+F L+ E++TG+ Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMVLQNTQSNYDTDVFTPLVGEIEEITGVTYGKSEENNIAMRVIADHVRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP + L+P L +MG+ + EL + Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVPVLSGQMGATFQELKSQQN 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE +R E+ F +TLD+GL+LL+ ++ KD+ ++G+ AF+LYDT G P+D+ IL Sbjct: 359 LIENVIREEEASFLRTLDQGLILLENLMKE-SKDKTISGEKAFELYDTFGFPIDLTALIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G +D F L++Q+ R+R + + W L + F+GYD L Sbjct: 418 KENGY-DLDEKGFEAELKKQKDRSREA-----TAVSAGDWIELNPVDEES-FVGYDKLEA 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + RK VE G+ +VV ++TPFY E G Sbjct: 471 DAKIARYRK---------------------------VESKKKGEMFQVVLNKTPFYPEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + + KK +H + TE ++ R + Sbjct: 504 GQVGDKGILMSSDGEVVDVVDTKKENNQIIH--FTKNLPKNTEAEFKAIVNKTERYNTAS 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +ILG+HV Q GS + LRFD +H +T EL+ +E+ VN I + Sbjct: 562 NHTATHLLHQALRSILGTHVEQKGSMVQSGYLRFDFSHFSKVTGEELEKVENFVNARIRE 621 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + R ++ ++AI GA AL G KY D VR + S LCGG HV +T + Sbjct: 622 QLSLDEQRNISYQEAIDQGAIALFGEKYGDSVRAIRFGD------SMELCGGIHVKNTSD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I ES++ +GIRRIEAITG+ A + Q L+ + S LK + + V + + Sbjct: 676 IWHFKISGESAVASGIRRIEAITGEAAMKYFEEQTNILEEIKSGLK-NSNDPVKAINNLQ 734 Query: 765 EEYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE L+ K K + I VNF+S + ++D+ +K + L ++ Sbjct: 735 EENINLKRQIESLLKDKAKNLKSKLKHEVKSINGVNFLSKKV-DLDAAGIKDLAFQLGEE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 I + +L G + KA + ++++L+ NA + R K + GGG GG+P A + Sbjct: 794 IDD-LFILFGAEQHGKALLSCYISKELVKGKDLNAGQIVRELGKYIQGGG-GGQPFFATA 851 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG N + ++A+ SF+K Sbjct: 852 GGKNPDGLNEALQKAESFIK 871 >gi|290968328|ref|ZP_06559869.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] gi|290781603|gb|EFD94190.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] Length = 869 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 344/906 (37%), Positives = 508/906 (56%), Gaps = 52/906 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +LEFF++ H L S SLIP NDP+L+ +GM P K FTG+ P V Sbjct: 4 MTGNEIRKAYLEFFKRKRHLQLHSFSLIPENDPSLLLIGAGMAPLKPYFTGKLVPPSPRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ +LD Sbjct: 64 TTSQKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAISWAWEFLTEVLELD 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +LY+TVY +D EA+ W + GL ++I + DNFW + E GPCGP SEIF+D G Sbjct: 120 TDKLYVTVYPDDTEAYGYWHTVIGLPEERIFKC--EDNFWEIGE-GPCGPDSEIFYDLGA 176 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVF Q+ + + + L K +IDTG GLER+A+V+Q+ Sbjct: 177 ERGCGKPECTVGCDCDRYLEIWNLVFSQYNRTAEGKYEPLAKKNIDTGAGLERLASVIQQ 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K +N++ DL +I+ + Y + V +VI DH+R+ + +I+DGILP+NEGRG Sbjct: 237 KESNFETDLIFPIIEEVITLCHGDYTDPQQKVAMKVIADHIRAITVMISDGILPSNEGRG 296 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA+ + RLLG + + L+ + MG YPEL + + LI++ + +E+++F Sbjct: 297 YVLRRVLRRAVRFGRLLGIRQLFLSGLVETVLAIMGEEYPELREHEALIKKVINTEEKQF 356 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL +G+ LLD +L+ G + L+G FKLYDT+G P+++ ++I +G+ ID+ F Sbjct: 357 SETLVQGMELLDSLLAKAGTAKTLSGQEVFKLYDTYGFPVELTEEIAAEQGVT-IDMNGF 415 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A++EQ+ RARA + + + D L + Sbjct: 416 AAAMKEQQERARAARADVAAKV----------------------------LTPDTTSLDR 447 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + ++ + + + G+ E G+ + V+ D+TPF+AE GGQLGDTG G Sbjct: 448 QTLQYAEGVTTATIVMLGKDGQEAEAVHDGETITVILDRTPFHAEGGGQLGDTGVLTAHG 507 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +TD + GI A V G L+ ++ + +D + L+ NH+ATHLLH AL Sbjct: 508 GKAVVTDTKALPNGIIYMIAGVMEGSLKKGETVTVAVDTERHAALARNHTATHLLHTALR 567 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV+Q GS +TPD LRFD TH P+T+AEL+ E VN I +N PV+ MNRE+ Sbjct: 568 QVLGNHVNQAGSLVTPDHLRFDFTHFSPVTAAELREAEQLVNREILKNTPVMVTEMNREE 627 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA AL G KY D VRVVS+ G S LCGG+HV ST E+ I+SES Sbjct: 628 AKQKGATALFGEKYGDVVRVVSI-----GDFSCELCGGSHVKSTAEVGTFRIISESGTGT 682 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEAITG A + + + L A+ LKV ++V ++ ++ EE + + + K Sbjct: 683 GVRRIEAITGAAALAKAQAEAQILAQAAAVLKVKPESLVTKLTQLAEELKITEREVQRLK 742 Query: 779 LQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + V + + D L++ D L K G+++L G+ + Sbjct: 743 KDAAAAAVDRLAATTQHYGSVAVSAAVAPADDMDGLRTFADLLLDKQGGGVVLL-GMVHD 801 Query: 834 KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K + + V + D +A + + +A+ GG G GGRP MAQ+GG K + A+ Sbjct: 802 GKVNFVCKVAKADTKKGLHAGKIIKAAAQAAGGNG-GGRPDMAQAGGKEPEKLEAALRAG 860 Query: 893 ASFLKK 898 + + Sbjct: 861 CEVVTQ 866 >gi|227891107|ref|ZP_04008912.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] gi|227866981|gb|EEJ74402.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] Length = 917 Score = 748 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 505/920 (54%), Gaps = 62/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF+ GH+++ S+ LIP +DPTL++ NSG+ K F G P Sbjct: 38 MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 97 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT + Sbjct: 98 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 153 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITVY ED++A K W + G+ I DNFW + E GP GP SEIF Sbjct: 154 WFDMDKEKLYITVYPEDKDAKKYW-EEVGVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 209 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 FD+G+ + E RY+EIWN+VF +F + LP +IDTGMGLE Sbjct: 210 FDRGQEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 269 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288 R+ +V Q N++ DLF +I+ + +++ K G N V+ +VI DH R+ +F I D Sbjct: 270 RVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGD 329 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M SAYPE+++ IE Sbjct: 330 GALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIE 389 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + ++ E++RF TL G+ LLD +++ ++ + L G FKLYDT+G PL++ ++ Sbjct: 390 KVIKMEEDRFNDTLKEGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYAN 449 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D FN+ +E+Q++RARA S + L + ++++GY L+ Sbjct: 450 DEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHELK-- 504 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + ++K I+ E+V+ + + +V+FD+TPFYAE GG Sbjct: 505 ---------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGG 543 Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H I + E + L +D ++ Sbjct: 544 QVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHVLKEMTRENTYSLEVDVAFHNKVKK 603 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LGSH Q GS + P LRFD T+ +T+ +LK IED VN I + Sbjct: 604 NHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWE 663 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+ V T + ++E A GA AL G KY D VRVV V G +S CGGTHV++T EI Sbjct: 664 NIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEI 718 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 L IVSES + AG+RRIEA+T + A L +++ L+ A LK V V ++E++ Sbjct: 719 GLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQ 778 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+ + L+ + + + + +I ++ ++ +L+ + D ++K Sbjct: 779 EQVKLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQLRQLADQWKEK 838 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + + K +++ ++ D + + A DL + A +GGGG GGRP +AQ+G Sbjct: 839 QLSDVLVLATATADGKVNLITAISGDAVKEGYKAGDLIKAIAPKVGGGG-GGRPDLAQAG 897 Query: 879 GPNGNKADQAIAGVASFLKK 898 G +A+ +L K Sbjct: 898 GKKPEGIQEALKAAEDWLNK 917 >gi|282880930|ref|ZP_06289621.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1] gi|281305153|gb|EFA97222.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1] Length = 875 Score = 748 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 324/920 (35%), Positives = 496/920 (53%), Gaps = 75/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F +FF+ GH ++ S+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 3 MMTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 63 RADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVGVLHL 122 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D EA K W+K L AD II +DNFW M +TGPCGPC Sbjct: 123 DPKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPC 180 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IEIWN+VFMQF ++ L IDTGM Sbjct: 181 SEIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ +LQ K +NYD D+F+ I E+++G KY V RV+ DHLR+ +F I Sbjct: 241 GFERLVRMLQGKNSNYDTDIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ YA LG E + LLP L EMG AYPEL+ + Sbjct: 301 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRE 360 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403 LI + ++ E++ F +TL++G+ LL + L K ++G+ AF+L+DT+G PLD+ + Sbjct: 361 LIGKVMKEEEDSFLRTLEKGINLLSNAMDELKKAGKTQIDGEQAFRLFDTYGFPLDLTEL 420 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I G + +D F+ +++Q+ RAR + W +++ G QF+GYD Sbjct: 421 ICREHGFS-VDEQQFHAEMQKQKDRARNA-----AQVENSDWVEIRQ--GEQQFVGYDYT 472 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + RKV +K EV+ D TPFY E Sbjct: 473 EYECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGE 504 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G + + + + D +++ ++ E + ++ R Sbjct: 505 MGGQVGDQGVLVSEHETVDVIDTKRENNQSIHII---KQLPQHPEADFMACVETDKRDAC 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+ATHLL +AL +LG HV Q GS ++PD LRFD +H + +T E++ +E VND+I Sbjct: 562 AANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNDLI 621 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 Q++P+ R E+A GA AL G KY D+VRVV S CGG H ST Sbjct: 622 RQDIPLDEHRDTPIEEAKEMGAVALFGEKYGDKVRVVRFGP------SCEFCGGIHAKST 675 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I L I+SESS+ AG+RR EAITG++ + ++ +K++ S + ++ G +E+ Sbjct: 676 GRIGLFKIISESSVAAGVRRFEAITGRQCEEAMYAIEDTVKAIRSLFN-NAKDLKGVIEK 734 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E+ ++ + + Q + V + ++ +D K ++ ++ Sbjct: 735 YMDEHATMRKEIEQFQAQAVQRTKDELIKRAETVNGVTVIKAVLP-IDGNAAKDLVFKIR 793 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875 + I S ++ ++G + ++K + +++++D++ NA + R +AK++ GG GGG+PH A Sbjct: 794 EAIPSHLLCVIGSTAQQKPLLSVMLSDDMVKEQGLNAGQMVREAAKLIQGG-GGGQPHFA 852 Query: 876 QSGGPNGNKADQAIAGVASF 895 +GG N + A+ V Sbjct: 853 SAGGKNVDGISAAVDKVIEL 872 >gi|326329808|ref|ZP_08196128.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1] gi|325952394|gb|EGD44414.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1] Length = 894 Score = 748 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 331/926 (35%), Positives = 485/926 (52%), Gaps = 71/926 (7%) Query: 3 NVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 + + IR F F +N H ++PS+SL+ +DP L+F N+GMVPFK F GQ P Y Sbjct: 5 STAEIRRRFTAHFAENTEIGEHTVVPSASLL-LDDPNLLFVNAGMVPFKPFFLGQATPPY 63 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 T+VQKC+R D++ VG+T RH TFFEM GNFSFG YFKE AI LAW+L+TK Sbjct: 64 PRATSVQKCIRT----PDIEEVGKTTRHGTFFEMCGNFSFGDYFKEGAITLAWELVTKSV 119 Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 F D+ LY +V + DEEA LWKK+SGL D+I+R+ ++N+WSM GP GPCS Sbjct: 120 ADGGFGFDESVLYPSVLNGDEEAVALWKKVSGLPDDRIVRLPPSENYWSMGVPGPGGPCS 179 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ---------FEQQNKQERFILPKMSI 224 EI D+G + + RY+E WNLVFMQ ++ L + I Sbjct: 180 EILIDRGPEFGADRDWDAGD--RYLEFWNLVFMQDNVVAARSKYDVDIDG---PLAQTGI 234 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSS 282 DTG+GLER+A ++Q K+N Y+ D+ +I+ + ++TG KY + V RV+ DH+RSS Sbjct: 235 DTGLGLERVAYLMQGKSNMYETDVVFPVIEKAMELTGKKYGAAYEDDVRFRVVADHVRSS 294 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 LI DG+ P NEGRGYVLRR+MRRA+ RLLGY +P M LLP +MG Y +L Sbjct: 295 LMLIGDGVTPGNEGRGYVLRRLMRRAIRNMRLLGYEDPAMPELLPISRDKMGETYTDLHT 354 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400 I+ +E+E F KTL G + D + + GD AF+L+DT+G P+D+ Sbjct: 355 EWDRIKRVADAEEEAFRKTLAAGTQIFDLAATEVKSSGSTTFTGDKAFQLHDTYGFPIDL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIG 459 ++ GL +D F + EQR RA+A + + ++ + + G T + Sbjct: 415 TLEMAAEAGLE-VDEAGFRGLMTEQRERAKADARAKKGQHADLTVYRGILDTNGPTDWQA 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y L S A++++G+ V+ + E+V D+TP Sbjct: 474 YTTLD-----------------------TESKPVALLREGKPVDVLGPEEIGEIVLDRTP 510 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-LVLTIDYQ 578 FYAE+GGQ D G DG RL++ DVQ+ +G+ VH V G S + +D + Sbjct: 511 FYAESGGQSADAGIIEFDGGRLEVVDVQRPVKGLVVHQVRVVDGEFHGGESLVHAKVDPE 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R HS TH++H AL +LG Q+GS P LR D +K +T ++ IE+ Sbjct: 571 WRLGARQAHSGTHVVHAALREVLGPTALQSGSFNRPGYLRLDYGWTKGLTPEQMHEIEEV 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGT 697 N+ + +LPV M A GA AL G Y+D +VRVV + GG S LCGGT Sbjct: 631 SNNALRADLPVSWDYMTLPQAKEWGAIALFGETYDDSKVRVVEI----GGPWSRELCGGT 686 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV + +I + + SE+S+ +G RRIEA TG +L + + + L LK G+VV Sbjct: 687 HVDHSAQIGTIVVTSEASVGSGNRRIEAYTGVEGFKYLARERDVVSELNLLLKTKSGDVV 746 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSV 812 GRV ++ E + + A+ + + S + V ++ + V + +++ Sbjct: 747 GRVSDLMERLKAAEKEIARARTAQLLASGGSIAASAVDVNGVQVVAQRVPGVGGGDARTL 806 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ ++ ++L G + +K A V V + A DL + A V+ GG GGG Sbjct: 807 AQDVRSRLGDAPAAVVLFGDADDKVAVVAAVNPAGIAKGVKAGDLIKELAPVV-GGRGGG 865 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P AQ GG + D+A+A V S + Sbjct: 866 KPDFAQGGGTEVGRIDEAVAKVKSLV 891 >gi|163786078|ref|ZP_02180526.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159877938|gb|EDP71994.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] Length = 870 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 320/919 (34%), Positives = 467/919 (50%), Gaps = 73/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+ FL FF+ H ++PS+ ++ +DPTLMF NSGM PFK F G P + Sbjct: 1 MKSQEIRSKFLNFFEGKQHLIVPSAPMVLKDDPTLMFVNSGMAPFKEYFLGNADPKKNRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D Sbjct: 61 ADSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYGID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D+EA+ LWK+ + D+I+ DNFW M + GPCGPC Sbjct: 121 KDMLYVTVFEGSNDADNLKMDQEAYDLWKEF--IPEDRILMGNKKDNFWEMGDQGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + +EIWNLVFMQ+ ++ + LP IDTGM Sbjct: 179 SEIHVDIRSEEEKSKVDGKSLVNMDHPQVVEIWNLVFMQYNRKANKSLETLPNKHIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ VLQ +NYD D+F +I+ E +T Y + V RVI DH+R+ +F I Sbjct: 239 GFERLCMVLQGVQSNYDTDVFTPIIREIEAITHKDYGKDEKVDVAIRVISDHVRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K Sbjct: 299 ADGQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVNILSKKMGKAFPELKAQKQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE ++ E+ F +TL++GLVLLDG++ K + ++G F+L DT+G P D+ IL Sbjct: 359 LIENVIKEEESSFLRTLEQGLVLLDGIV-KTSKTKEISGSKVFELKDTYGFPEDLTDLIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G +N + +A+ S W L +FIGYD L Sbjct: 418 REKGYT------YNAEEFKTSLKAQQDRGREASELKSDDWTILHHDEVE-EFIGYDTLEA 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + RK V G+ ++VF+ TPFY E G Sbjct: 471 HVKITRYRK---------------------------VTSKKDGEMYQLVFNITPFYPEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + + KK + +H + ++ L +D + R + Sbjct: 504 GQVGDKGYLEDEHGDVVYILDTKKENNLIIH--FTKNLPKHSDEVLKAVVDIKQRYRTEC 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG HV Q GS + LRFD +H +T EL+ +E+ VN I Sbjct: 562 NHTATHLLHQALREVLGDHVEQKGSAVHSKHLRFDFSHFSKLTLEELRDVENFVNSRIEG 621 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 LP+ R + +E AIA GA +L G KY D VR + S LCGGTHV++T + Sbjct: 622 KLPLEENRSVPKEQAIADGAMSLFGEKYGDNVRTIRFG------QSIELCGGTHVNNTAD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SES++ +GIRRIEAIT + + + L + + ++ + Sbjct: 676 IWHFKITSESAVASGIRRIEAITNDAVKDFYFENNRVYFEMKDLLN-NAKEPLKALQNLQ 734 Query: 765 EEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E L+ K K + +L +I V F++ + ++D+ +K V L + Sbjct: 735 DENTDLKKQIENLLKDKAKNIKGELKNELTEINGVQFLAKKL-DLDAGGIKDVSFELGSQ 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ + +L G KA + ++++L+ NA + R K + GGG GG+P A + Sbjct: 794 FKN-LFLLFGSENNGKAILSCYISKELVASKDLNAGTIVRELGKHIQGGG-GGQPFFATA 851 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N D A+ ++L Sbjct: 852 GGKNPAGIDAALKAAKNYL 870 >gi|227484973|ref|ZP_03915289.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172] gi|227237128|gb|EEI87143.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172] Length = 872 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 321/913 (35%), Positives = 498/913 (54%), Gaps = 56/913 (6%) Query: 1 MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M N+ + +R ++LEFF + H LL S L P +D TL+ N+GM P K FTG+ K Sbjct: 1 MKNLGMNELRKSYLEFFGNEKNHTLLKSFPLTPIDDDTLLLINAGMAPLKKYFTGELKMK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T+ Q+CVR G D++ VG+T RH TFFEMLGNFSFG YFK AI A++ LTK+ Sbjct: 61 NNRATSSQRCVRTG----DIERVGKTERHGTFFEMLGNFSFGDYFKREAINWAFEFLTKK 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 ++++ L++TVY +D+EA+ +W G+ A++I+R DNFW + E GPCGPCSEI+ Sbjct: 117 LEINKDDLWVTVYYDDDEAYNIWHDEIGMPAERILRQGKEDNFWEL-EVGPCGPCSEIYV 175 Query: 178 DQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+G ++ +R++E+WNLVF QF + N+ L +IDTGMGLER+A Sbjct: 176 DRGPERAVDENDNQPGNDNSDRFMEVWNLVFTQFNKDNQGNYTNLSHPNIDTGMGLERIA 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 +LQ K N ++ID+ K +I E+++G Y + V+ RVI DH ++ +FL++DG++P Sbjct: 236 MILQGKDNIFEIDVMKEIISEIEKLSGKTYKANKVDDVSIRVIADHAKAMTFLVSDGVIP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRR++RRA + +LLG P + ++ + Y EL+ I + + Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGPFLNKIVDKVIETYKVEYDELVDNMDNIHKVIS 355 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E++RF KT+++GL LD +++ + K+ IL+G AFKLYDT+G PLD+ ++IL + L Sbjct: 356 DEEDRFQKTINQGLEKLDSLIADMEKNNIKILDGSEAFKLYDTYGFPLDLTKEILEEKNL 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F + +E QR+ AR + + L + T F GY+ Sbjct: 416 DVDD-EKFEEEMENQRNLARNARKTDNKHKHDNL---LADHLEKTDFQGYENFD------ 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + AI GE + K +V D+T FY E GG++ D Sbjct: 466 -----------------LEGKLLAIFVDGEENSSIKAPNKGIIVSDKTSFYPEGGGEVAD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG ++ DVQKK + IF + V G ID + R + NHSAT Sbjct: 509 TGFIKTSNACAKVVDVQKKNDIIFHY-VEVTEGEFVRGSVARFVIDLERRLDIQRNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG +++Q GS + D LRFD T++K +++ EL+ IE+ +N I + LPV Sbjct: 568 HLLDKALKNVLGQNINQAGSLVDEDKLRFDFTYNKALSNEELRKIEEEINAKIREQLPVK 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ + + GA AL KY D VRVVS+ G +S LCGG HV++T E+++ I Sbjct: 628 KEYMDYKKSEELGAVALFEDKYKDIVRVVSM-----GDYSIELCGGCHVNNTAEVLMFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SESS AG+RRIEAITG+ L+ ++ +K +A+ L + N+ ++ + E Sbjct: 683 KSESSAAAGVRRIEAITGKAVFEELISKENTIKEIANDLDANINNIKSKINSLKSEIASK 742 Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K Q N + K+ VN + EL+ + + + + + +I Sbjct: 743 DSEIKRLKSQSNKDVYSELKSKIEKVNGVNLLIAKFDNASVDELRELENKFKNEYDNLVI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +S K + V ++L D++NA + R A++ GG G GG+ + AQ+GG + + Sbjct: 803 IFATVS--DKIIFTVSVDDNLTDKYNAGKIVREIAQITGGNG-GGKKNFAQAGGSDISAL 859 Query: 886 DQAIAGVASFLKK 898 D+A+ +K+ Sbjct: 860 DKALKRAYEIIKE 872 >gi|315022567|gb|EFT35594.1| alanyl-tRNA synthetase [Riemerella anatipestifer RA-YM] gi|325335524|gb|ADZ11798.1| Alanyl-tRNA synthetase [Riemerella anatipestifer RA-GD] Length = 867 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 325/918 (35%), Positives = 498/918 (54%), Gaps = 75/918 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ H ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + Sbjct: 1 MTSQQIRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDLD+VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKREAIAFAWELLTEVYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+T+++ D+EA+ WK ++ D+I+ DNFW M E+GPCGPCS Sbjct: 121 KENLYVTIFEGDATENLERDQEAYNCWKSY--IAEDRILNGNKKDNFWEMGESGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + IE+WNLVFM+F ++ LP +DTGMG Sbjct: 179 EIHIDLRSEEEKSKVSGKDLVNQDHPQVIEVWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFL 285 ER+ LQ KT+NYD D+F LI EQ++ KY + + RV+VDH+R+ SF Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIAKVEQLSHKKYEGLLDNEKDIAIRVVVDHIRAVSFA 298 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N G GYV+RRI+RRA+ Y+ L E + L+ L +MG+ +PE+ + + Sbjct: 299 IADGQLPSNTGAGYVIRRILRRAISYSYRFLDMKEAFLYELVAVLKNQMGAFFPEIEKQE 358 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402 L+ E ++ E+ F KT++ GLV L+ ++ ++ L G F+LYDT+G P D+ + Sbjct: 359 KLVTEVIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSR 418 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 I +GL +D F++ +E+Q+ R++ + +K++ + K F+GYD Sbjct: 419 IIAEEKGLT-VDEKGFDEEMEKQKQRSKKS-------SAQKVYDWVTLKDETESFVGYDQ 470 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L F+ + RK+ E G +VVF+QTPFYA Sbjct: 471 LEHKVFITKYRKL----------------------------ENKDGVFYQVVFNQTPFYA 502 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G + + ++ D +K+ + + + ++V + RR Sbjct: 503 EGGGQVGDKGYIESEEGQFEVLDTKKENNLNISLIKDLPQAPEKEFTAVVDSRL---RRN 559 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHSATHLLH AL +LG+HV Q GS + D LRFD +H ++ E+ +E+ VN Sbjct: 560 TQANHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAK 619 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +N+ + R + ++A+ GA AL G KY D VR++ S LCGGTH S Sbjct: 620 IKENISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHAKS 673 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T EI L IVSESS AGIRRIEAI+ ++A ++ +E++ L+ LK +V VE Sbjct: 674 TSEIGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVE 731 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQ 817 ++ EE +KL+ K +L + + K + + ++ +D+ +K ++ L+ Sbjct: 732 KLLEENQKLKSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K++ + +I+++ K + + V++DL D +NA + + AK + GGG GG P A + Sbjct: 792 KEVPTSVIVILS-DANDKPMISVGVSDDLGDSYNAGVIVKELAKEIQGGG-GGNPGFATA 849 Query: 878 GGPNGNKADQAIAGVASF 895 GG N +A S Sbjct: 850 GGKNLEGLPKAYEKAQSL 867 >gi|282859190|ref|ZP_06268312.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010] gi|282588009|gb|EFB93192.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010] Length = 885 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 321/935 (34%), Positives = 485/935 (51%), Gaps = 88/935 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA + W K L AD II +DNFW M + GPCGPC Sbjct: 121 DPKDLYVTVFEGSPEENIPRDDEAAQYWLK--HLPADHIIDGNKHDNFWEMGDIGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 +EI D G +++ + IEIWN VFMQF ++ L IDTGM Sbjct: 179 TEIHIDSRPENERNGIPGRELVNKDDPQVIEIWNNVFMQFNRKADGSLEPLAMNVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273 G ER+ +LQ K +NYD D+F+ +I+ E ++ KY V R Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIKEIEAISNFKYGFTTPSGKDGECANDQEKVDVAMR 298 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332 VI DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E M LLP L E Sbjct: 299 VIADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQREAFMFKLLPTLVRE 358 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKL 390 MG AYPEL + LI ++ E++ F +TL++G+ LL G + L L+G AF+L Sbjct: 359 MGGAYPELPAQQELIGRVIKEEEDSFLRTLEKGISLLSGAMDELKAHNQTELDGKEAFRL 418 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + I G +D F++ + +Q++RAR ++ W +K+ Sbjct: 419 FDTYGFPLDLTELICRENGYT-VDEKQFDEEMAQQKARARNAAV-----VENGDWMIVKD 472 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G +F+GYD + RKV +K Sbjct: 473 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 502 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + +++ D +++ + E Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGVLVSEDETIEVIDTKRENNQSVHIVKEM---PKDIEAD 559 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D R + NH+ATHLL +AL +LG H Q GS ++P LRFDV+H + IT Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQVLGEHAEQKGSYVSPTTLRFDVSHFQKITDE 619 Query: 631 ELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VN++I + + R ++A GA AL G KY D+VRVV Sbjct: 620 ELRQVERLVNELIREDYILDEHRNTPIDEAKKMGAVALFGEKYGDKVRVVKFGP------ 673 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S CGG H +STG I IVSESS+ AGIRRIEA+TG + + Q++ L L + Sbjct: 674 SCEFCGGIHATSTGRIGFFKIVSESSVAAGIRRIEALTGANSEEAIYDQEDTLTELKAMF 733 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV 804 + ++ V++ +E+ ++ + Q ++ +N + ++ V Sbjct: 734 N-NPKDLKAVVQKYIDEHEAMKKEMESSRQQGVARHAKALIEGVEQVDGLNIVKAVL-NV 791 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862 D+ K ++ +++ I ++ ++G + + + I++++D++ NA + R +A++ Sbjct: 792 DAASAKDIVFKVREAITEKLVCVLGSVNDNRPQLSIMLSDDMVKEGGKNAGKIIREAAQL 851 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + GG GGG+PH AQ+GG + + A+ LK Sbjct: 852 IKGG-GGGQPHYAQAGGKDASNLSAAVDKALELLK 885 >gi|78185740|ref|YP_378174.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902] gi|78170034|gb|ABB27131.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902] Length = 899 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 325/907 (35%), Positives = 498/907 (54%), Gaps = 53/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR+ FL F+++ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ++ T Sbjct: 25 TGAEIRSAFLRFYEERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQERPAPRAT 83 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D Sbjct: 84 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDP 139 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 140 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 199 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ N Sbjct: 200 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 258 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 259 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 318 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + A+P +++ + +I L+ E+ RF Sbjct: 319 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 378 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL K ++G AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 379 ETLERGEKLLSEVLDSKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 435 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E+QR RA+A ++ + + I + AT F GY L Sbjct: 436 EAMEQQRQRAKAAAVSIDLTLQDAID-QVVATQKATAFQGYQRLEQP------------- 481 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+V GE A +G V++V + TPFY E GGQ+GD G G + Sbjct: 482 ----------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 531 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + ++ +FVH +ERG L ++ +D RR+ NH+ATHLL AL Sbjct: 532 -IVAIESVSRSRDVFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 590 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD + +T+ +L IE +N IA+ ++ M + A Sbjct: 591 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 650 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D V D S LCGGTHV++T EI L IV ES + AG Sbjct: 651 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 705 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L ++ +K L K G +V RV + +E + + Sbjct: 706 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 765 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830 +L V I + + VD L+ +L ++ G +++G Sbjct: 766 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 825 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + K ++ +D++ + A AK+ GGGG GGRP++AQ+GG +G A+ Sbjct: 826 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGG-GGRPNLAQAGGRDGAALAGAL 884 Query: 890 AGVASFL 896 L Sbjct: 885 ETARMEL 891 >gi|301300923|ref|ZP_07207095.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851522|gb|EFK79234.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 880 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 505/920 (54%), Gaps = 62/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF+ GH+++ S+ LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT + Sbjct: 61 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITVY ED++A K W + G+ I DNFW + E GP GP SEIF Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYW-EEVGVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 FD+G+ + E RY+EIWN+VF +F + LP +IDTGMGLE Sbjct: 173 FDRGQEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288 R+ +V Q N++ DLF +I+ + +++ K G N V+ +VI DH R+ +F I D Sbjct: 233 RVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M SAYPE+++ IE Sbjct: 293 GALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + ++ E++RF TL G+ LLD +++ ++ + L G FKLYDT+G PL++ ++ Sbjct: 353 KIIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYAN 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D FN+ +E+Q++RARA S + L + ++++GY L+ Sbjct: 413 DEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHELK-- 467 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + ++K I+ E+V+ + + +V+FD+TPFYAE GG Sbjct: 468 ---------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H I + E + L +D ++ Sbjct: 507 QVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTRENTYSLEVDVAFHNKVKK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LGSH Q GS + P LRFD T+ +T+ +LK IED VN I + Sbjct: 567 NHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+ V T + ++E A GA AL G KY D VRVV V G +S CGGTHV++T EI Sbjct: 627 NIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 L IVSES + AG+RRIEA+T + A L +++ L+ A LK V V ++E++ Sbjct: 682 GLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+ + L+ + + + + +I ++ ++ +L+ + D ++K Sbjct: 742 EQVKLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQLRQLADQWKEK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + + K +++ ++ D + + A DL + A +GGGG GGRP +AQ+G Sbjct: 802 QLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVGGGG-GGRPDLAQAG 860 Query: 879 GPNGNKADQAIAGVASFLKK 898 G +A+ +L K Sbjct: 861 GKKPEGIQEALKAAEDWLNK 880 >gi|205830481|sp|Q3AVV3|SYA_SYNS9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 890 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 325/907 (35%), Positives = 498/907 (54%), Gaps = 53/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR+ FL F+++ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ++ T Sbjct: 16 TGAEIRSAFLRFYEERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQERPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ N Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + A+P +++ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL K ++G AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 370 ETLERGEKLLSEVLDSKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E+QR RA+A ++ + + I + AT F GY L Sbjct: 427 EAMEQQRQRAKAAAVSIDLTLQDAID-QVVATQKATAFQGYQRLEQP------------- 472 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+V GE A +G V++V + TPFY E GGQ+GD G G + Sbjct: 473 ----------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + ++ +FVH +ERG L ++ +D RR+ NH+ATHLL AL Sbjct: 523 -IVAIESVSRSRDVFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD + +T+ +L IE +N IA+ ++ M + A Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 641 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D V D S LCGGTHV++T EI L IV ES + AG Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L ++ +K L K G +V RV + +E + + Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830 +L V I + + VD L+ +L ++ G +++G Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 816 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + K ++ +D++ + A AK+ GGGG GGRP++AQ+GG +G A+ Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGG-GGRPNLAQAGGRDGAALAGAL 875 Query: 890 AGVASFL 896 L Sbjct: 876 ETARMEL 882 >gi|260663392|ref|ZP_05864283.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] gi|260552244|gb|EEX25296.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] Length = 882 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 316/915 (34%), Positives = 491/915 (53%), Gaps = 61/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR +L+FF ++GH +PS SL+P NDPTL++ NSG+ KN F G+ P +T Sbjct: 8 NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ AI AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A + W +G+ D + + DNFW + + GP GP +E+F+D+G Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHL--LADQDNFWDIGQ-GPSGPDTEVFYDRG 179 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + + E RY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ E + K G N V ++I DH+RS +F I DG LP Sbjct: 240 IFENAKTNFETDLFMPLIKQVEVFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RR++ + LG EP + ++P + M YP++++ I + Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF TL+ GL LL+ V+ + + ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W + + ++++GY L Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTD---ESKYVGYTDLVVD--- 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ V + G+ ++A GQ+V+V+FDQTPFYAE GGQ+ Sbjct: 473 -------------------NAKVIGLAADGKQADQAEPGQQVDVIFDQTPFYAEMGGQVA 513 Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG I + ++ T + A H + ++ L +D ++ NH+ Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELTAPIKKGARYKLVVDRARHLKIEKNHT 573 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + LRFD H +T +LK +ED VN+ I + +P Sbjct: 574 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEIP 633 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A GA AL KY D+VRVV + G ++ CGG HV +T EI L Sbjct: 634 VTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGLF 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 IVSE + AG+RRIEA+T A + + + + L +A+ LKV V RV E+ ++ Sbjct: 689 KIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQL 748 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ + + +L + + A ++ + +L+ + D ++K S Sbjct: 749 KEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDYS 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L + + KA++L+ V + L A DL + A + GG GGGRP +AQ+GG N Sbjct: 809 DVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKNP 866 Query: 883 NKADQAIAGVASFLK 897 +A+ + F+ Sbjct: 867 AGISEALKLASQFMN 881 >gi|303232757|ref|ZP_07319442.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4] gi|302481243|gb|EFL44318.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4] Length = 883 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 320/917 (34%), Positives = 491/917 (53%), Gaps = 64/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ G + PSSSLIP +DP+L+ N+GM FK + G + Sbjct: 9 MTTAQIRENFLQFFESKGCKRYPSSSLIP-DDPSLLLANAGMNQFKEYYQGIKTMREIGA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ QKC+R ND++N+G RH +FFEMLGNFSFGGY K +AI AW+ +T + Sbjct: 68 TSCQKCLRT----NDIENIG-DARHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPEHLG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + RLY+TV+ D+EA +LW++ G+ I R+ DNFW+ TGPCGPCSEI+FDQ Sbjct: 123 LPKDRLYVTVFTNDDEACELWQEQ-GVDLSHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 181 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G G P ++G+RY+E WNLVF QF++Q LP +IDTGMGLER+A ++Q Sbjct: 182 GPEFEGEKP--GDDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +NY+ D+ + LI E+++ +Y + R++ DH R+ +F+I DGILP NEGR Sbjct: 240 QGSNYEGDVLRTLIAVGEKLSNKRYHETAATDKSLRILADHARACTFMIGDGILPGNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ + RLLG M + M ++YP+L + K I+ + +E++R Sbjct: 300 GYVLRRLLRRAIYHGRLLGIRGEFMRTYTHEVMRLMATSYPQLTEGKDRIDAIVSAEEQR 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TLD G LL+ L+ L + L+G+VAFKL+DT+G P+D+ + D+ + Sbjct: 360 FCATLDAGEALLNKELAQLPSGKPLSGEVAFKLHDTYGFPIDLTC-EIAENAQHPTDMDT 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN +E+Q++RARA + G IW SL ++ T+F+GY Sbjct: 419 FNALMEDQKARARAQANRDAWGQANSIWASLSDELSETEFLGYTQNSCDD---------- 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + V A+V+ G +V A G V+V+ D+TPFY E GGQ+GDTG Sbjct: 469 ------------ARVLALVRDGALVPSASCGDVVDVILDKTPFYGERGGQVGDTGTLRCG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 L + D Q +A + VH V++G + ++ ID R + NH+ATHLL AL Sbjct: 517 ESVLHVDDTQHQAHILIVHTCTVQKGSIAKGDTVSAQIDVTRRELIRRNHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HVSQ GS + PD LRFD TH + +T ++ +E VN I P+VTR++ Sbjct: 577 KQVLGKHVSQAGSLVAPDRLRFDFTHFEALTRDQIDQVEAIVNREIFAAEPMVTRVVPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A + A AL Y+ VR+V + V+S LCGGTHV +T +I I+SE+S+ Sbjct: 637 EARKTDAIALFDEMYDADVRIVQTGSSEDAVYSRELCGGTHVRNTADIGYFKIISETSVG 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 + +RR+EA+T A ++ + +L LAS LK + +V+ RV+++ Sbjct: 697 SNVRRLEALTSCGAYEYVDAKLSELGQLASMLKCREDDVLARVDQLKSSLSAADKKLKAA 756 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK--KIQSGIIMLVGI 830 + + + S + + + + V++K+L+S+ D +++ +L Sbjct: 757 LSGSSSDQVSSAVSSAYNKSGYKLVIAHVQHVEAKDLRSMWDGIRQCMNQTPCACVLASS 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLAR----------LSAKVLGGGGGGGRPHMAQSGGP 880 + EK A + + + F+A + + + Q+GG Sbjct: 817 TGEKAALLAAATDDAIAAGFDAAQVIKAIAGAIAGHGGGKAAMA-----------QAGGT 865 Query: 881 NGNKADQAIAGVASFLK 897 N D A+A + L Sbjct: 866 NAQGIDDALAQARTLLN 882 >gi|256847960|ref|ZP_05553404.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256715020|gb|EEU29997.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 883 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 317/917 (34%), Positives = 496/917 (54%), Gaps = 62/917 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF ++GH+ +PS SL+P +DPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLDFFIQHGHKEMPSRSLVPVDDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ I AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKKEVIPWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +LY+T Y +D +A+ W+ +G+ + +I+ DNFW + + GP GP +EIF+D+G Sbjct: 124 DPEKLYVTYYPKDHDAYNYWRA-AGVPENHLIQ--NKDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 EC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + E ERY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 180 QEMNNVAEDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ +E + K G N V ++I DH+R+ +F I DG LP Sbjct: 240 IFENAPTNFETDLFMPLIKQTETFSQNKQYGQNAADDVQFKIIADHIRTITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I ++ Sbjct: 300 SNMGRGYVIRRLLRRAVVTGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIK 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE+ERF TL+ GL LL+ V+ ++ ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEERFSTTLNGGLNLLNNVIDDAKQNGTNEIDGKTAFKLYDTYGFPIELTKEYASDEGL 419 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W E ++++GY L Sbjct: 420 T-VDQSGFEAAMTEQQNRARNARDIDNGMGVQTDVWTDFTE---PSKYVGYHQLSVE--- 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQL 528 ++ + + G+ V+EA +EV+FD TPFYAE GGQ+ Sbjct: 473 -------------------NAKIIGLTADGQHVQEADPQADDIEVIFDVTPFYAEMGGQV 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG G ++ + A H + ++ L +D ++ NH Sbjct: 514 ADTGDIIDNYGHQVGRVVDVQHAPHQQNLHRVKLTAPIKLGAKYRLVVDRIRHLKIEKNH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + LRFD H +T+ +LK++E VND I + + Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKAVEKMVNDQIWKEI 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A GA AL KY D+VRVV + G +++ CGG HV +T E+ L Sbjct: 634 PVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVQNTNELGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEE 766 IVSE+ + AGIRRIEA+TG A + + + L ++A+ LKVSQ V RV+E+ + Sbjct: 689 FKIVSEAGVGAGIRRIEAVTGSDAFKFMQERTDLLDTVANELKVSQEKEVPHRVQELQTQ 748 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ +A + ++ + S ++ ++ +L+ + D + K Q Sbjct: 749 LKDLEKDNANLQAKIAAQQASQVFDDVQDTKQGRLIAAELNVAGMGQLRQLADQWRAKGQ 808 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S ++L + + KA++L+ V++ + A DL + A + GG GGGRP +AQ+GG N Sbjct: 809 SDFLVLATANGD-KANLLVAVSDTKAKKVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKN 866 Query: 882 GNKADQAIAGVASFLKK 898 QA+ +L + Sbjct: 867 PAGIKQALQQANDYLNQ 883 >gi|313207039|ref|YP_004046216.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868] gi|312446355|gb|ADQ82710.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868] Length = 867 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 324/918 (35%), Positives = 498/918 (54%), Gaps = 75/918 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ H ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + Sbjct: 1 MTSQQIRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDLD+VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKKEAIVFAWELLTEVYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+T+++ D+EA+ WK ++ D+I+ DNFW M E+GPCGPCS Sbjct: 121 KENLYVTIFEGDATENLERDQEAYNCWKSY--IAEDRILNGNKKDNFWEMGESGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + +E+WNLVFM+F ++ LP +DTGMG Sbjct: 179 EIHIDLRSEEEKSKVSGKDLVNQDHPQVVEVWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFL 285 ER+ LQ KT+NYD D+F LI EQ++ KY + + RV+VDH+R+ SF Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIAKVEQLSQKKYEGLLDNEKDIAIRVVVDHIRAVSFA 298 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N G GYV+RRI+RRA+ Y+ L E + L+ L +MG+ +PE+ + + Sbjct: 299 IADGQLPSNTGAGYVIRRILRRAISYSYRFLDMKEVFLYELVAVLKNQMGAFFPEIEKQE 358 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402 L+ E ++ E+ F KT++ GLV L+ ++ ++ L G F+LYDT+G P D+ + Sbjct: 359 KLVTEVIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSR 418 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 I +GL +D F++ +E+Q+ R++ + +K++ + K F+GYD Sbjct: 419 IIAEEKGLT-VDEKGFDEEMEKQKQRSKKS-------SAQKVYDWVTLKDETESFVGYDQ 470 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L F+ RK+ E G +VVF+QTPFYA Sbjct: 471 LEHKVFITRYRKL----------------------------ENKDGVFYQVVFNQTPFYA 502 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G + + ++ D +K+ + + + ++V + RR Sbjct: 503 EGGGQVGDKGYIESEEGQFEVLDTKKENNLNISLIKDLPQAPEKEFTAVVDSRL---RRN 559 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHSATHLLH AL +LG+HV Q GS + D LRFD +H ++ E+ +E+ VN Sbjct: 560 TQANHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAK 619 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +N+ + R + ++A+ GA AL G KY D VR++ S LCGGTH S Sbjct: 620 IKENISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHAKS 673 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T EI L IVSESS AGIRRIEAI+ ++A ++ +E++ L+ LK +V VE Sbjct: 674 TSEIGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVE 731 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQ 817 ++ EE +KL+ K +L + + K + + ++ +D+ +K ++ L+ Sbjct: 732 KLLEENQKLKSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K++ + +I+++ K + + V++DL D +NA + + AK + GGG GG P A + Sbjct: 792 KEVPTSVIVILS-DANDKPMISVGVSDDLGDSYNAGVIVKELAKEIQGGG-GGNPGFATA 849 Query: 878 GGPNGNKADQAIAGVASF 895 GG N +A S Sbjct: 850 GGKNLEGLPKAYEKAQSL 867 >gi|295132657|ref|YP_003583333.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87] gi|294980672|gb|ADF51137.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87] Length = 869 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 330/919 (35%), Positives = 490/919 (53%), Gaps = 73/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FLEFFQ H ++PS+ ++ +DP+LMFTN+GMV FK F G P V Sbjct: 1 MKSQEIRKSFLEFFQGKSHSIVPSAPMVLKDDPSLMFTNAGMVQFKEFFLGNSVPKNTRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT +F +D Sbjct: 61 TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAINWAWELLTHKFKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY++V++ D EA ++WKKI + D+II DNFW M + GPCGPCS Sbjct: 121 KDSLYVSVFEGSEEDGVGLDTEALEIWKKI--VPEDRIIYGNKKDNFWEMGDQGPCGPCS 178 Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + + G + + + +EIWNLVFMQF ++ LP IDTGMG Sbjct: 179 EIHVDIRSPEEKAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEELPAKHIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287 ER+ V+Q K +NYD D+F LI E++T Y + N RVI DH+R+ +F IA Sbjct: 239 FERLCMVMQGKQSNYDTDVFTPLITEIEKITNSSYGTSEETNIAIRVIADHVRAVAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y L EP + L+ ++MG A+PEL++ + L Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVDCTKSQMGEAFPELVKQQQL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE ++ E+ F +TL++GLV+L+ +++ EI +G AF+LYDT G P+D+ IL Sbjct: 359 IENVIKEEELSFLRTLEQGLVMLENIVTQSKDKEI-SGVKAFELYDTFGFPIDLTALILK 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G + ++I F L++Q+ R+RA + + W + E F+GYD L Sbjct: 418 EKGYS-LNIAEFEAELKKQKERSRAATQ-----VSSGDWEEINE-VDEDAFVGYDQLETQ 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RK VE G ++VF +TPFY E GG Sbjct: 471 VKIAKYRK---------------------------VETKKQGTLYQIVFTKTPFYPEGGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G ++ I D +K++ I ++ S +D R + + N Sbjct: 504 QVGDKGYLTSGEEKISIIDTKKESNQIIH---FAKKLPQNISGSFTAVVDASARTKTAAN 560 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ILG+HV Q GS + P+ +RFD +H ++S E++ +E VND I + Sbjct: 561 HTATHLLHQALRHILGTHVEQKGSMVQPNYMRFDFSHFSKLSSEEIEKVEQFVNDRIQEG 620 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L + R + + A+ GA AL G KY D VR + S LCGGTHV +T +I Sbjct: 621 LQLEEQRNIAYQHALDQGAIALFGEKYGDSVRAIRFGE------SMELCGGTHVKNTADI 674 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I ES++ +GIRRIEAITG + + Q E L+ + LK + + V + + + Sbjct: 675 WYFKITGESAVASGIRRIEAITGDAVKEYFTKQTELLEEVQGLLK-NAKDPVKAISGLQD 733 Query: 766 EYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E L+ K K + +I + F++ + ++D+ +K + L +I Sbjct: 734 ENADLKKQVEALLKDKTKNLKSEIKNEIQEINGIQFLAKKV-DLDAGGIKDLAFQLGGEI 792 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + +L G ++ KA + ++++L NA + R K + GGG GG+P A +G Sbjct: 793 DD-LFLLFGTEQKGKALLSCYISKELVETKDLNAGTIVRELGKYIQGGG-GGQPFFATAG 850 Query: 879 GPNGNKADQAIAGVASFLK 897 G N +A+ +++ Sbjct: 851 GKNPAGIPEALKEAKKYIE 869 >gi|291276861|ref|YP_003516633.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198] gi|290964055|emb|CBG39895.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198] Length = 850 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 319/898 (35%), Positives = 495/898 (55%), Gaps = 57/898 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FL+FFQ GH++ S L+P D +L+FTN+GMV FK+IFTG+ P T+ Sbjct: 3 DIRKKFLDFFQSKGHQVYASMPLVPE-DASLLFTNAGMVQFKDIFTGKIPTPSIPRATSS 61 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ D+ Sbjct: 62 QLCIRAGGKHNDLENVGFTRRHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTEVLGFDKEV 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LYI++++ D+EAF++W K ++ D+I R+ DNFW M +TG CGPCSEIF DQG Sbjct: 122 LYISIHESDDEAFEIWSKY--VNPDRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGSSFA 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+++ LPK SIDTGMGLER++ +L+ K +N+ Sbjct: 180 SSEDYFGGDGDRFLEIWNLVFMQYERKSDGTLIPLPKPSIDTGMGLERVSALLEGKESNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF LI+ E++ G Y + ++RVI DH R+ +FL+A G EGRGYVLRRI Sbjct: 240 DSHLFMPLIKEVEKLCGKPYHYESGASYRVIADHARAVAFLLAQGSNFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ ++ +C EMG Y L++ K I + E+ERF +T+++ Sbjct: 300 LRRAVRHGYLLGFEGAFFYRIVEKVCEEMGGFYTYLLEQKNFISMQTKMEEERFFETIEQ 359 Query: 365 GLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ L L + + +++ +G++AF+LYDT G PLD+ QD+L L +D+ F ++ Sbjct: 360 GIHLFKKELERMREMGEKVFDGNIAFRLYDTFGFPLDLTQDMLKEENLE-LDLAGFESSM 418 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 ++Q+ A++ G G + + + +++G+ F GY Sbjct: 419 QKQKQLAKSSWKGSGDPLIKGDFKQVLQEFGSNIFNGYTH-------------------- 458 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + S + A+ + +E + ++ ++ D TP Y E+GG +GD G + +G + Sbjct: 459 ---DRHHSKILALFDENLERQEILQ-KEGYILLDTTPLYPESGGAIGDRGVLLENGECIA 514 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 KK G+ + ++ L+ + +D+ + ++ +HSATHLLH L G Sbjct: 515 KILDTKKYFGLNISQISPKK-PLKVGEIYEVLVDHSRQE-IAKHHSATHLLHAILREKFG 572 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 S V+Q GS + + LRFD + +PIT EL I+D+VN +IA+NLP M A Sbjct: 573 SQVAQAGSLVEANRLRFDFSFPRPITKEELLEIQDSVNALIAKNLPARVEHMEIGQAKTR 632 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY + VRVVS G S LCGG HV +TG I YI E+ + +G+RR Sbjct: 633 GAIALFGEKYGENVRVVSF-----GEESCELCGGIHVQNTGFIGNFYITKENGVSSGVRR 687 Query: 723 IEAITGQRARSHLMGQDEKL--KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 IEA+ G +L ++ L + + LK +++ V ++ E+ + L+ K Sbjct: 688 IEAVCGNAG--YLHAKESLLHNQQIKEILKNQ--DMMLGVAKLKEKIKTLEKQLQNPKKD 743 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 + L +I ++ + I E+K ++D + I+L+ +K + Sbjct: 744 TS---LQVQQINGISLIVQITEST---EIKKLIDEAKNHYDKVAILLI----NEKNLAIA 793 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +++ A D + +A++L GG GGGR A +GG +K A+ + K+ Sbjct: 794 AGSKNT--NIKADDWVKKTAQIL-GGNGGGRDDFATAGGKEHSKIKAALQSAILYAKE 848 >gi|289643307|ref|ZP_06475431.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata] gi|289506881|gb|EFD27856.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata] Length = 894 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 321/921 (34%), Positives = 492/921 (53%), Gaps = 62/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I + +L +F GH ++PS+SLI +DPTL+ N+GMVPFK F G+ P Y Sbjct: 1 MKSAEIASRWLRYFADRGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGEVAPPYSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKCVR D++ VGRT RH +FF+M GNFSFG YFKE I LAW+LLT Sbjct: 60 ASVQKCVRT----TDIEEVGRTTRHGSFFQMCGNFSFGDYFKETVIPLAWELLTTPVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L + RL++TVY +D+EA +W G+ D+I R+ DNFWSM GPCGPCSEI Sbjct: 116 GYGLAEDRLWVTVYLDDDEAADIWHSKIGVPTDRIQRLGMEDNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + GERY+EIWNLVFMQ+ + + P +IDTG+GL Sbjct: 176 YDRGPEF-GAEGGPAVNGERYLEIWNLVFMQYIRGEGSSKKDYPILGDLPSRNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+AT+LQ N Y+ID + ++ + +TG +Y E + V+ RV+ DH+R+S LI D Sbjct: 235 ERLATILQGVDNLYEIDTSRVILDRTSALTGARYGAEHRSDVSLRVVADHVRTSVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+LP NEGRGYVLRR+MRRA+ RLLG + M ++ A MG YPEL+ ++ I+ Sbjct: 295 GVLPGNEGRGYVLRRMMRRAIRNMRLLGAHDATMHEMVEATIEAMGPQYPELVTDRVRID 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F +TL G + D S K ++ G+ F+L+DT+G P+D+ ++ Sbjct: 355 SVATAEEAAFLQTLRTGTSIFDLAASETKKAGGSVIPGERVFQLHDTYGFPVDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRG 465 GL +D F + + EQR RA+A + +G + + + G + F GYD Sbjct: 415 ETGLT-VDEEGFRRLMTEQRQRAKADARAKKTGHVDTSAYRDVLAAAGPSAFTGYD---- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + V+ ++ G EA G VE+V D+TPFYAE G Sbjct: 470 -------------------SGAEEARVRGLLVGGAAAREAAQGDDVEIVLDRTPFYAEGG 510 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G ++I DVQK + VH V G + + ID R +S Sbjct: 511 GQLADAGVIRLADGTEIEILDVQKPLPELIVHRGRVRTGEVTLGADVQAEIDPARRAAIS 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +HSATHL H AL LG +Q GS +P RFD + + + + L +E+ +N ++ Sbjct: 571 RSHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFSAAAAVPPSVLADVEETINQVLT 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++L V +M+ + A +GA A+ G KY+DRVRVVS+ G +S LCGGTHV +G+ Sbjct: 631 EDLDVHAEVMDIDQARRTGAIAMFGEKYSDRVRVVSI-----GDYSRELCGGTHVRRSGQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ E+S+ AG+RR+EA+ G A +L + + + LK + +V R+ ++ Sbjct: 686 LGLVKLLGEASVGAGVRRVEALVGLDAYRYLAREAVLVSQITDVLKAPRADVPERLSQVL 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHI-ISEVDSKELKSVMDALQK 818 R+ + K + + + + ++H + +L+ + ++ Sbjct: 746 GRLREAEKELEKLRAAQVLAIAGDLARAAEDVGGTALVTHRAADGTSADDLRKLAIDIRG 805 Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ + ++ V + + ++ +R A +L R +AK+LGGGG GG+ +A Sbjct: 806 RVPADRPAVVAVAAAASGRPVIVAATNGPARERGIRAGELVRGAAKILGGGG-GGKDDLA 864 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG N + A+ GV + Sbjct: 865 QGGGSNPDAIADALVGVRQAV 885 >gi|184154997|ref|YP_001843337.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956] gi|227514535|ref|ZP_03944584.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931] gi|183226341|dbj|BAG26857.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956] gi|227087092|gb|EEI22404.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931] Length = 882 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 316/915 (34%), Positives = 490/915 (53%), Gaps = 61/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR +L+FF ++GH +PS SL+P NDPTL++ NSG+ KN F G+ P +T Sbjct: 8 NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ AI AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A + W +G+ D + + DNFW + + GP GP +E+F+D+G Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHL--LADQDNFWDIGQ-GPSGPDTEVFYDRG 179 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + + E RY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ E + K G N V ++I DH+RS +F I DG LP Sbjct: 240 IFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RR++ + LG EP + ++P + M YP++++ I + Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF TL+ GL LL+ V+ + + ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W + + ++++GY L Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTD---ESKYVGYTDLVVD--- 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ V + G+ ++A GQ V+V+FDQTPFYAE GGQ+ Sbjct: 473 -------------------NAKVIGLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQVA 513 Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG I + ++ T + A H + ++ L +D ++ NH+ Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELTAPIKKGARYKLVVDRARHLKIEKNHT 573 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + LRFD H +T +LK +ED VN+ I + +P Sbjct: 574 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEIP 633 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A GA AL KY D+VRVV + G ++ CGG HV +T EI L Sbjct: 634 VTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGLF 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 IVSE + AG+RRIEA+T A + + + + L +A+ LKV V RV E+ ++ Sbjct: 689 KIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQL 748 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ + + +L + + A ++ + +L+ + D ++K S Sbjct: 749 KEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDYS 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L + + KA++L+ V + L A DL + A + GG GGGRP +AQ+GG N Sbjct: 809 DVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKNP 866 Query: 883 NKADQAIAGVASFLK 897 +A+ + F+ Sbjct: 867 AGISEALKLASQFMN 881 >gi|269123200|ref|YP_003305777.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112] gi|268314526|gb|ACZ00900.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112] Length = 865 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 321/911 (35%), Positives = 506/911 (55%), Gaps = 63/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +F+EFF+ H+ S+SLIP +D TL+ T +GMVPFK+ F G++K Y + Sbjct: 1 MTGNELRKSFIEFFKSKEHKHFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKKAPYNRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R NDL+NVG T RHHTFFEMLGNFSFG YFK +I+ +W+ +T+ LD Sbjct: 60 TTYQKCIRT----NDLENVGVTPRHHTFFEMLGNFSFGDYFKRESIKWSWEYITEILKLD 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178 RLY++VY D+EA+ +W K G+ D ++R+ +DN+W+ E G CGPCSEI++D Sbjct: 116 PNRLYVSVYLTDDEAYDIWTKEVGVPEDHMVRLGDDDNWWAAGEIGSCGPCSEIYYDTQI 175 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GE +EG R++EIWNLVF ++ + LP+ +IDTG GLER+A+V+Q Sbjct: 176 MGENNEEINSKPGDEGNRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K+NN++ DLF +I+ ++V +K E + ++I DHL++S+FLI DG+LP+NEGRG Sbjct: 236 NKSNNFETDLFIPIIENIKEVLSIK-EEEISTSVKIIADHLKASTFLICDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 Y+L++++RRA + + + +++ ++ M AY EL + + I+ ++S Sbjct: 295 YILKKLIRRAYGAGAIENREIFNKSLTFLHNIVDSIIDNMKEAYIELDEKREYIKNIIKS 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+++F +TL G +L + + I L DV+FKLYDT+G P + + I+ Sbjct: 355 EEDKFSRTLKSGTEILFEEIKKCKSENISKLPSDVSFKLYDTYGFPFEFTRLIV-ENNKM 413 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + FNQ LEEQ R++ + ++ ++ G T F GYD L Sbjct: 414 IVSEDEFNQKLEEQVKRSQDSRVKNSDMIKDEFIDKFYKENGKTLFTGYDTLND------ 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V I + + + EV+F++TPFYAE GGQ+ D Sbjct: 468 -----------------EAKVLHI--------KNLENELYEVIFNRTPFYAEGGGQIADK 502 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D + K +F+H+ E E L +D + R + NH+ATH Sbjct: 503 GVIKYDNKVIAEVKDVIKKSDVFIHYISGEELKFDIEYILE--VDKKRRNDIKKNHTATH 560 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH L +LGS V Q GS ++ DGLRFD ++ + ++ ++ IE+ VN++I +NLPV Sbjct: 561 LLHKVLKDVLGSAVEQAGSLVSDDGLRFDFSYYEQVSQEQVNIIENKVNELILENLPVYI 620 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 N DA+ GA AL KY D VRV+ + S LCGGTHVSSTGEI L I Sbjct: 621 NYENINDAVKKGAMALFSDKYGDVVRVIDISGV-----SLELCGGTHVSSTGEIGLFKIK 675 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE +GIRRIEA TG ++ ++ ++ ++ +++ K S N++ + + EE + + Sbjct: 676 SEQGKASGIRRIEATTGYKSLEYVHNLEKDIQDISNKFKTSPVNLIPAINKYREEVKVQE 735 Query: 772 ---LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +R ++ + DL I V + + D ELK ++D ++ ++S +I+ Sbjct: 736 NTIKELQRRLVKFEINDLTNEAIDINGVKVLVKSFKDKDVNELKDLVDRAKEILKSCVIL 795 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 +KA + VT+DL+++++A ++ + +A + G GGGRP AQ+GG +GNK Sbjct: 796 FGS--NNEKAIFVSGVTKDLINKYHAGNIVKNAA-TIADGNGGGRPDFAQAGGKDGNKVK 852 Query: 887 QAIAGVASFLK 897 +A+ ++K Sbjct: 853 EALEKTLEYIK 863 >gi|229815209|ref|ZP_04445545.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM 13280] gi|229809219|gb|EEP44985.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM 13280] Length = 884 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 334/897 (37%), Positives = 504/897 (56%), Gaps = 46/897 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR+ +L FF++ G++L SSSL+P +DP+L+ N+GM FK + G++ Sbjct: 8 MSTAEIRSAYLNFFEERGNKLYASSSLVP-DDPSLLLANAGMNQFKEYYQGKKVMKEIGA 66 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVR ND+D +G RH +FFEMLGNF+FGG KE+A A++L+T+ F L Sbjct: 67 CSCQKCVRT----NDIDIIGSDGRHASFFEMLGNFAFGGVTKEQACTWAYELITEVFKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ TV+ +D+E +W+ + G+ D I R+ +DNFW+ TGPCGPCSEI+FD GE Sbjct: 123 KERLHFTVFTDDDETHDVWRAL-GVPEDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGE 181 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G P + +R++E WNLVF QF++Q LP ++DTGMGLERMA ++Q Sbjct: 182 EVGCGCPDCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANE 295 K++ +D D+ + LI+ E+++G Y N + R+I DH RS FLI+DG+LP NE Sbjct: 242 KSSFFDGDVMQSLIKLGEEISGKTYVDNEYTGASRSLRIIADHARSVDFLISDGVLPGNE 301 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + RLLG + + + A+ MG AYP L++ L++ + +E+ Sbjct: 302 GRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPNLVENAGLVKGIVNAEE 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF TL+ G V LD L LG+ E L+G AF L+DT G P+D+ +I + G +DI Sbjct: 362 ERFSTTLNNGRVYLDEQLGALGEGEQLSGKAAFMLHDTFGFPIDLTVEIAESAGH-AVDI 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ + EQ++RARA + G G+ +W L ++ AT+F GY+ Sbjct: 421 DGFDAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFAGYEEESIEG-------- 472 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V AIV GE V A + + VV D+TP YAE GGQLGD G Sbjct: 473 --------------AHVLAIVVNGERVASAENAAEASVVLDRTPLYAEMGGQLGDHGLID 518 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +++ K H G L ++ D R L+ NH+ATHLL Sbjct: 519 TADAQFFVSNTVSKGGLYV--HEGKLIGKLSEGDTVFAGYDLNRRGLLARNHTATHLLDA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I PVVTR+M Sbjct: 577 ALKEVLGDHVNQAGSLVSPEALRFDFTHFEAMTSEQIRAVEDLVNEQILAAKPVVTRVMG 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A ASGA AL G KY+D VRVVS+ ED S LCGGTH ++T E+ L IVSESS Sbjct: 637 IEEAKASGAVALFGEKYSDTVRVVSIGAED-EPFSRELCGGTHAANTAELGLFKIVSESS 695 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +RRIEA+T A ++L + +S AS LK V R+ + E R+ Sbjct: 696 TGSNVRRIEAVTSTGAIAYLEQRAALAESAASQLKCRIEEVPARISSLQAELRESNQKLK 755 Query: 776 KRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K ++ + + + ++ +++ +L++V D +++K+ ++ Sbjct: 756 KALTGGGSDAISSAIENAQDMGGYKLVVAELAGLEASDLRNVWDTIRQKVSGACACVLAT 815 Query: 831 SKEKKA--SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 EK + + F+A ++ + A ++ G GGG+P MAQ+GG + Sbjct: 816 VTEKGTPALIAAATDDAASAGFHAGNVIKQIAPLV-DGRGGGKPTMAQAGGKDAQGV 871 >gi|172040632|ref|YP_001800346.1| alanyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109] gi|205830039|sp|B1VDL4|SYA_CORU7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171851936|emb|CAQ04912.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 888 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 321/920 (34%), Positives = 486/920 (52%), Gaps = 58/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F + F K+GH +PS+SLI +DP L+F N+GMVPFK F GQE P + Sbjct: 1 MQTHEIRQRFTDHFVKSGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQETPPFGTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT Sbjct: 60 TSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWTLLTNSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L+ RL++TVY++D+EA +LW + GL ++I R+ DN+W M GPCGPCSEI+ Sbjct: 116 GLGLNPDRLWVTVYEDDDEAAQLWHDLVGLPTERIQRLGMEDNYWHMGVPGPCGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGL 230 +D+G G G + + R+IEIWNLVFM+FE+ + I+ PK +IDTGMG+ Sbjct: 176 YDRGPAY-GEDGGPAVDDSRFIEIWNLVFMEFERGETKPDGSFDIVGNLPKKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E++TG +Y + + + RVI DH R++ LI D Sbjct: 235 ERLAFLLQGVDNVYETDLLRPVIDTAEKLTGTRYGTQDKDDIRFRVIADHSRTALMLILD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + ARLLG ++ LL + M +YPE+ + I Sbjct: 295 GVTPGNEGRGYILRRLIRRIIRSARLLGAQGAVIEQLLGTVREAMTPSYPEIEENWERIR 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E++ F KTL+ G L + L+ ++ G VAF L+DTHG P+D+ +++ Sbjct: 355 SVGVTEEKAFLKTLESGSQLFEQFLTEARNSGTSVVPGAVAFSLHDTHGFPIDLTREMAE 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 L +D F++ + EQ++RA+A S + + T F GY+ Sbjct: 415 EASLT-VDEAGFHELMAEQKARAKADSAAKKHVHADLSVYRAFIDSHPTHFTGYENTAD- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V ++ G++ + A +GQ +V+ DQTPFYAE+GG Sbjct: 473 ----------------------EGKVLGLIVDGQLADRASAGQHAQVILDQTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G G ++ DVQK A+ ++ H V G L L +D + R Q Sbjct: 511 QMADRGSLRGPGGLAKVVDVQKIAKKVWAHLIEVTEGELAIGELLEARVDQKWRHQARQA 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS THL+H AL +LG Q GS P LRFD ++ +T +L+ IE+ N + + Sbjct: 571 HSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFSYGDQLTEKQLQQIEEIANSAVDTD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + E+A A GA AL G Y +VRVV + GG S LCGG HV + +I Sbjct: 631 YQVNTIETSLEEAKAMGAMALFGENYGKQVRVVEI----GGPFSMELCGGIHVDHSSQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G+RRIEA TG + HL + +LA+ K + + R++ + + Sbjct: 687 PISVLGESSVGSGVRRIEAYTGMDSFRHLAADRSLVANLAANFKATSEEIPERIDALTAK 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820 + + + + Q + S ++ V ++ + + +KEL+SV + Sbjct: 747 LKAAEKQVQQLRAQQLAAQVGSIVDSAADVSGVKVLTQNLGEGLGAKELRSVAQDAIARF 806 Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S ++L +K + ++R A DL + +GG G GG+P +AQ Sbjct: 807 NSETAVVLFTSQDGEKVPFVAAANPQAVERGLKAGDLVKAFGAEVGGRG-GGKPALAQGS 865 Query: 879 GPNGNKADQAIAGVASFLKK 898 G + + D +A V + + Sbjct: 866 GSDASGVDAGLAAVQRLVNE 885 >gi|282878226|ref|ZP_06287022.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310] gi|281299644|gb|EFA92017.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310] Length = 872 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 326/921 (35%), Positives = 496/921 (53%), Gaps = 75/921 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F +FF+ GH ++ S+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRRR 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI AW+ L LD Sbjct: 61 ADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLD 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D EA K W+K L AD II +DNFW M +TGPCGPCS Sbjct: 121 PKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + IEIWN+VFMQF ++ L IDTGMG Sbjct: 179 EIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ +LQ K +NYD +F+ I E+++G KY V RV+ DHLR+ +F IA Sbjct: 239 FERLVRMLQGKNSNYDTGIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA LG E + LLP L EMG AYPEL+ + L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQREL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 I + ++ E++ F +TL++G+ LL+ + L K ++G+ AF+L+DT+G PLD+ + I Sbjct: 359 IGKVMKEEEDSFLRTLEKGINLLNNAMDELKKAGKTQIDGEQAFRLFDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G + +D FN +++Q+ RAR + W +++ G QF+GYD Sbjct: 419 CREHGFS-VDEQQFNAEMQKQKDRARNA-----AQVENSDWVEIRQ--GEQQFVGYDYTE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + RKV +K EV+ D TPFY E Sbjct: 471 YECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGEM 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G + + + + D +++ ++ E + +D R + Sbjct: 503 GGQVGDQGVLVSEHETVDVIDTKRENNQSIHII---KQLPQHPEADFMACVDTDKRDACA 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLL +AL +LG HV Q GS ++PD LRFD +H + +T E++ +E VN++I Sbjct: 560 ANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNNLIR 619 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 Q++P+ R E+A GA AL G KY D+VRVV S CGG H STG Sbjct: 620 QDIPLDEHRDTPIEEAKEMGAIALFGEKYGDKVRVVRFGP------SCEFCGGIHAKSTG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I L I+SESS+ AG+RR EAITG++ + ++ +K++ S + ++ G +E+ Sbjct: 674 RIGLFKILSESSVAAGVRRFEAITGRKCEEAMYAIEDTVKAIRSLFN-NAKDLKGVIEKY 732 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E+ ++ + + Q I V + ++ +D K ++ +++ Sbjct: 733 MDEHDTMRKEIEQFQAQAVQRTKDELIRRAENINGVTVIKAVLP-IDGNAAKDLVFKIRE 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 I S ++ ++G + ++K + ++++ED++ NA + R +AK++ GG GGG+PH A Sbjct: 792 AIPSHLLCVIGTTAQQKPLLSVMLSEDMVKDHGLNAGQMVREAAKLIQGG-GGGQPHFAS 850 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N + A+ V K Sbjct: 851 AGGKNVDGIRAAVDKVIELAK 871 >gi|257439376|ref|ZP_05615131.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165] gi|257198251|gb|EEU96535.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165] Length = 886 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 323/914 (35%), Positives = 497/914 (54%), Gaps = 55/914 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P VTT Sbjct: 6 LNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKC+R D++ VG T RH TFFEMLGNFSF YFKE I AW+ LT + + Sbjct: 66 CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMAIP 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+I+VY+ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+G Sbjct: 122 KDKLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+Q Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D + ++ E + G Y + ++ RVI DH+RS +F+++DGILP+NEGR Sbjct: 241 VGNLFEVDTVQSVLHHVEHIAGKTYGENAKDDISIRVITDHIRSCTFMVSDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG + P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 301 GYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ ++ L +L G FKL DT G PLD+ ++I +G ID Sbjct: 361 FARTIDAGMNILNNMIDGLEKAHQHLLKGLDVFKLNDTFGFPLDLTKEIAAEQG-IEIDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ +++Q+ RARA L + F T F GY+ L Sbjct: 420 DGFHAEMKKQKERARAERLKKNISGWSEDLFGGL-TVEPTVFTGYETLND---------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531 + +V A+ + + + + ++ V VV D+TPFYAE GGQ+ D Sbjct: 469 -------------TGVVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQVADN 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G L++ DV+K +G +VH ++E GI++ L +D + R + NH+ATH Sbjct: 516 GLLTGPECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLNAQVDKEYRMSVCRNHTATH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG HV Q GS + FD TH +T EL ++ VND I +++ V Sbjct: 576 LLQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTV 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M E+A GA AL G KY VRVV++E S+ CGGTHV +T +I IV Sbjct: 636 KEMPIEEAKKLGAMALFGEKYGKVVRVVNIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKL 770 SESS+ AGIRRIEA+TG+ Q+ L ++A+ LK + ++ R E + E + + Sbjct: 691 SESSVAAGIRRIEAVTGRNLLVRANLQEAMLHTVANTLKANNITSLPIRAEAVMAENKAM 750 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K ++ + + +++ V S + L+ + D+++ K + ++ Sbjct: 751 SKELEEIKAKVAASKVNSLFDNAEEVSGVKIASAYFTGTTGDTLRGMCDSIRDKAVNPVV 810 Query: 826 MLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ E K ++ + V + A L + + + GG G GG+P A +G + K Sbjct: 811 AVLVGKAEDKVTMAVTVNKLAQEKGLKAGVLVKEISAIAGGKG-GGKPDFAMAGLKDETK 869 Query: 885 ADQAIAGVASFLKK 898 D+A+A V ++K Sbjct: 870 IDEALAAVKGIVEK 883 >gi|239629711|ref|ZP_04672742.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239528397|gb|EEQ67398.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 878 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 316/917 (34%), Positives = 484/917 (52%), Gaps = 61/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 1 MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K F Sbjct: 61 TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +RLY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF+D+ Sbjct: 117 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 172 Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ E RY+EIWN+VF + P +IDTGMGLER+ Sbjct: 173 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 232 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q ++ DLF +I+A+E+++ K + V+ ++I DH R+ +F I DG L Sbjct: 233 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 292 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + Sbjct: 293 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 352 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE+ RF +TLD G+ LL+ +++ L +D + G AFKL+DT+G P+++ + G Sbjct: 353 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 412 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + + QR RAR S ++ L ++F G+ L Sbjct: 413 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 467 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++ IV ++ + G +++FD+TPFYAE GGQ+ Sbjct: 468 --------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 506 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + A H + +G L T L++D R+++S+NH+ Sbjct: 507 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLETGQQYWLSVDPLRRKKVSLNHT 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I LP Sbjct: 567 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M E+A GA A+ G KY VR+V + G +++ GGTH +++ + L Sbjct: 627 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSALGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV +V ++ + Sbjct: 682 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 741 Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q A + +L + + ++ + ++ + EL+ + D + K S Sbjct: 742 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I++L G KA++L+ V + F A DL + A +GGGG GGRP MAQ+GG N Sbjct: 802 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 859 Query: 882 GNKADQAIAGVASFLKK 898 A++ + + + Sbjct: 860 PAGIPAALSEAKTVISQ 876 >gi|117928537|ref|YP_873088.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B] gi|205829965|sp|A0LUJ2|SYA_ACIC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117649000|gb|ABK53102.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B] Length = 886 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 326/905 (36%), Positives = 484/905 (53%), Gaps = 62/905 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L FF+K H ++PS+ L+ +DP L+F +GM PFK F G + Sbjct: 1 MESAEIARRWLAFFEKRDHVVVPSTPLVA-DDPELLFVVAGMQPFKPYFRGDAPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQK +R D+D VG+T RH TFF M GNFSFG YFKE AI LAW+LLT Sbjct: 60 TSVQKVLRT----PDIDEVGKTTRHATFFHMCGNFSFGDYFKETAIPLAWELLTTPVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + RL++TVY +D+EA +W ++ GL D+I R DNFWSM GPCGPCSEI+ Sbjct: 116 GYGFAPDRLWVTVYTDDDEAADIWHRVVGLPVDRIQRRGMADNFWSMGVPGPCGPCSEIY 175 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMG 229 +D+G GG P ++EE RY+E+WNLVFMQ+E+ + P +IDTGMG Sbjct: 176 YDRGPEFGVGGGPVANEE--RYLEVWNLVFMQYERGPGGAKDNYPILGELPAKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287 LERMA +LQ N Y+ID + ++ + ++TG +Y N V R++ DH+R+ + L+ Sbjct: 234 LERMAAILQGVDNIYEIDTTRPILDKAAELTGQRYGSGGQNDVRLRMVADHIRAITMLVN 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG++P+NE RGYVLRR+MRR + RLLG EP M L+ YPEL + I Sbjct: 294 DGVVPSNEERGYVLRRLMRRVVRAMRLLGAREPTMHELVATAIAVFTPQYPELSRNAERI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E+ F TL G + + G +L+G+ AF L+DT+G P+D+ ++ Sbjct: 354 FAVADGEEASFFSTLAAGTARFEAAVREAG-GGVLSGEQAFVLHDTYGFPIDLTLEMAAE 412 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQFIGYDLLRG 465 +G+ +D F + EQR RA+ + +G ++ + + +F GY G Sbjct: 413 QGVT-VDEEGFRALMAEQRRRAKEDAERRKTGAADRAAYRAAAELLGRPVEFTGYTERSG 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++V+ ++ G V A +GQ+VEVV D+TPFYAE G Sbjct: 472 -----------------------EAVVRGLLVDGAAVPAAHAGQRVEVVLDRTPFYAEGG 508 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQL D G R+ + DVQ+ G+ VH V G + +++ ID R +S Sbjct: 509 GQLPDHGVLEFAAGRIDVDDVQQPLPGLIVHRGRVADGEITVGETVLARIDVDRRWAISR 568 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATH++H A LG +Q GS P RFD T+ + + L +E+ VND++ Sbjct: 569 SHTATHMVHKAFREFLGDTAAQAGSENAPGRFRFDFTNPSAVPPSVLGEVEERVNDLLLH 628 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L V +IM +++AIASGA A+ G KY D+VRV+S+ G S LCGGTHV TG + Sbjct: 629 DLEVTAQIMRQQEAIASGAIAMFGEKYGDQVRVISI-----GDWSRELCGGTHVPHTGHL 683 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 ++ IVSESSI AG+RRIEA+ G A +L + + LA LK + R+ + Sbjct: 684 GVIKIVSESSIGAGVRRIEALVGLDAYRYLAREAVLVSQLAEQLKAPADELPDRIAGMLA 743 Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII--SEVDSKELKSVMDALQK 818 R + K + + + + + + ++ + VD+ L+ + L++ Sbjct: 744 RLRDAEKELEKLRQARLLAEAPRLAAARVDVGGLAVVAARVDGDGVDADGLRLLATDLRQ 803 Query: 819 KI-QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ S +++L G++ + V V +E L A +L ++AK LGGGG GGRP AQ Sbjct: 804 RLGGSAVVVLAGVAGGRPVVVAAVGSEALARGVKAGELVGVAAKRLGGGG-GGRPDFAQG 862 Query: 878 GGPNG 882 GG N Sbjct: 863 GGTNP 867 >gi|90962086|ref|YP_536002.1| alanyl-tRNA synthetase [Lactobacillus salivarius UCC118] gi|122448814|sp|Q1WT32|SYA_LACS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|90821280|gb|ABD99919.1| Alanyl-tRNA synthetase [Lactobacillus salivarius UCC118] Length = 880 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 328/920 (35%), Positives = 505/920 (54%), Gaps = 62/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF+ GH+++ S+ LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT + Sbjct: 61 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITVY ED++A K W + G+ I DNFW + E GP GP SEIF Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYW-EEVGVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 FD+G+ + E RY+EIWN+VF +F + LP +IDTGMGLE Sbjct: 173 FDRGQEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288 R+ +V Q N++ DLF +I+ + +++ K G N V+ +VI DH R+ +F I D Sbjct: 233 RVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M SAYPE+++ IE Sbjct: 293 GALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + ++ E++RF TL G+ LLD +++ ++ + L G FKLYDT+G PL++ ++ Sbjct: 353 KVIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYAN 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D FN+ +E+Q++RARA S + L + +++++GY L+ Sbjct: 413 DEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTSSEYVGYHELK-- 467 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + ++K I+ E+V+ + + +V+FD+TPFYAE GG Sbjct: 468 ---------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + A H I + E + L +D ++ Sbjct: 507 QVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTRENTYSLEVDVAFHNKVKK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LGSH Q GS + P LRFD T+ +T+ +LK IED VN I + Sbjct: 567 NHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+ V T + ++E A GA AL G KY D VRVV V G +S CGGTHV++T EI Sbjct: 627 NIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764 L IVSES + AG+RRIEA+T + A L +++ L+ A LK V V ++E++ Sbjct: 682 GLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E+ + L+ + + + + I ++ ++ +L+ + D ++K Sbjct: 742 EQVKLLEQQKQALEDKFASQQAGDIFKNIKDINGKTLIAGQVNVSGMSQLRQLADQWKEK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + + K +++ ++ D + + A DL + A +GGGG GGRP +AQ+G Sbjct: 802 QLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVGGGG-GGRPDLAQAG 860 Query: 879 GPNGNKADQAIAGVASFLKK 898 G +A+ +L K Sbjct: 861 GKKPEGIQEALKAAEDWLNK 880 >gi|257066429|ref|YP_003152685.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548] gi|256798309|gb|ACV28964.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548] Length = 870 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 319/911 (35%), Positives = 511/911 (56%), Gaps = 56/911 (6%) Query: 1 MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M N+ + +R+ +L FF + GH LL S LIP +D +L+ N+GM P K FTG++K Sbjct: 1 MKNLGMNELRSKYLNFFGNEKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T+ QKCVR D++ VG+T RH TFFEMLGNFSFG YFK+ AI A++ LTKE Sbjct: 61 NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYEFLTKE 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 ++ + +++TV+ EDEEA+ +W GL +++I+R DNFW + E GPCGPCSEIF Sbjct: 117 LEISKDDIWVTVFKEDEEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFV 175 Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+G + +++ +R++E+WNLVF QF + ++ L +IDTGMGLER+A Sbjct: 176 DRGAGRAIDENDNRPGNDDSDRFMEVWNLVFTQFNKDSQGNYTPLAHPNIDTGMGLERIA 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 VLQ+K N +++D+ +I E+++ KY+ + V+ RVI DH ++ +FL DG+LP Sbjct: 236 MVLQDKDNIFEVDVMAAIISEIEKLSNKKYKESKKDDVSIRVIADHAKAMTFLTCDGVLP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRR++RRA + +LLG + +++ + Y EL + I+ +R Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGEFLTNIVDKVIDTYKVEYDELDANREKIKSVIR 355 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ERF KT+D+GL L+ ++S + K+++L+G AFKLYDT+G PLD+ ++IL + L Sbjct: 356 DEEERFQKTIDQGLERLESLISKMEKIKNKVLDGKEAFKLYDTYGFPLDLTKEILEEKNL 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D +FN ++ Q+ AR + + I + T F+GYD L Sbjct: 416 -DVDEKTFNDEMQIQKQTAREARKKDAGWSLDNINT---DGIAKTSFVGYDNLD------ 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + + ++ V G V+ D+T FYAE GG++ D Sbjct: 466 -----------------IKARILNLFKENSEVSSLSEGDNGIVISDKTSFYAEGGGEVAD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG + D + ++ DVQK+ + F + V G + +D R + NHSAT Sbjct: 509 TGLILSDSFKARVIDVQKQKDIYFHYI-EVVEGAVFVGDDAQFKVDRNKRLAIQRNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG V Q GS + + LRFD +H++ +T E+ +E+ VN I + V Sbjct: 568 HLLDQALRDVLGEDVKQAGSLVDENKLRFDFSHNRALTKEEIDKVEEIVNREIVKQELVT 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ +++ GA L KY D+VRVVS+ G +S LCGG HV++T +I++ I Sbjct: 628 KEIVDYKESQKMGAIGLFEDKYKDKVRVVSM-----GDYSIELCGGCHVNNTSDILMFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 ESS+ AG+RRIEA+TG++A +L + KL +A L + N+ R++ + +E KL Sbjct: 683 KQESSVSAGVRRIEALTGKKAFEYLNDRANKLDQVAERLNTNTNNITNRIDSLEKEIEKL 742 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +++ K + + +S +I +N + EL+ + ++ I + II Sbjct: 743 KSENSRLKSTNSSDIVSELKEDVKEIKGINLLVKKFENASMDELRDYENRIKSSIDNLII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +S K + V + L D++NA + R A++ GG G GG+ + AQ+GG + +K Sbjct: 803 VFASVS--DKIVFTVSVDDKLTDKYNAGKIVRQIAQITGGNG-GGKKNFAQAGGKDISKL 859 Query: 886 DQAIAGVASFL 896 +A+ V+ + Sbjct: 860 KEALEKVSEII 870 >gi|324999314|ref|ZP_08120426.1| alanyl-tRNA synthetase [Pseudonocardia sp. P1] Length = 886 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 332/922 (36%), Positives = 487/922 (52%), Gaps = 63/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I F F++NGH +PS+SLI DP L+F N+GMV FK F G Y Sbjct: 1 MQTHEIVRRFTAHFERNGHTPVPSASLI-LEDPQLLFVNAGMVQFKPYFLGDVPAPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+M GNFSFG YFK AI+ AW L+T Sbjct: 60 TSIQKCVRT----PDIDEVGKTTRHTTFFQMAGNFSFGDYFKRGAIEFAWSLITNSQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D R+++TVY++D+EA LWK I+GL +I R +DN+W M GP GPCSEI+ Sbjct: 116 GYGFDPERIWVTVYNDDDEAIALWKDIAGLPEQRIQRRGGDDNYWDMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RY+EIWNLVFMQ E+ + LP +IDTGMG+ Sbjct: 176 YDRGPEF-GAEGGPEADEDRYLEIWNLVFMQDERGELSPKKGHPPIGTLPHKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQE N Y+ DL + +I +E+++G +Y + V RVI DH RSS +I D Sbjct: 235 ERVAFLLQEVNNVYETDLVRPVIAKAEELSGRRYGRNEEDDVRFRVIADHARSSMMIIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RR + ARLLG T P + + M YPEL I Sbjct: 295 GVTPGNEGRGYVLRRLLRRIVRSARLLGVTGPCLGEFAAVVRDTMSPTYPELATDFERIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +R+E++ F TL G + +G ++ L GD AF+L+DT+G P+D+ ++ Sbjct: 355 AVIRAEEDTFRATLTAGEKIFEGAVAEARSTGRTTLPGDQAFQLHDTYGFPIDLTLEMAD 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 GL +D F ++EQRSRA+A + G G + ++ ++ + +GAT F+GY L Sbjct: 415 EAGL-AVDRERFTALMDEQRSRAKADAAGRKVGFVDASVYRAVLDTHGATDFLGYQSLNS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + +++ G+ V A G +VEV+ D+TPFYAEAG Sbjct: 474 -----------------------ESRIVGLLRDGQTVPAAEQGDQVEVLLDRTPFYAEAG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ DTG G +++ DVQ G+ VH +V G + + +V +D R +S Sbjct: 511 GQQADTGVLRGGSFEIRVDDVQSPVAGLRVHRGVVTAGTVTLDAEIVAEVDPARRSAISR 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIA 644 H+ATHL+H + LGS +Q GS P LRFD T + A L IE+ VN ++ Sbjct: 571 AHTATHLVHAGVRGALGSSAAQAGSLNAPGRLRFDFTSPTGAVDPAALVEIEEEVNSVLQ 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 Q+ + T + + A GA L G KY DRVRVV + G +S LCGGTHV TGE Sbjct: 631 QDREIQTYETSMDSARKLGAMMLFGEKYGDRVRVVDM-----GDYSRELCGGTHVRRTGE 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++SE+SI +G+RR+EA+ G A H + + LA LK + R++ + Sbjct: 686 LGLVRVLSEASIGSGVRRVEALVGLDAFQHATTEHLLVNQLAEQLKARPEELPDRIQGLV 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 E R + K + + + + ++ V +L+++ ++ Sbjct: 746 ERLRTAERDLEKHRADAVLASAGSLADAAEDLDGTALVAVTAPDGVAGNDLRTLAADVRG 805 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875 K+ G++ L ++ + K S ++ T+ D A L A +GG G GG+P +A Sbjct: 806 KLGDRPGVVALFAVA-DGKVSFVVATTKAARDNGVAAGKLIPEFAAAVGGRG-GGKPDLA 863 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 Q GG + D AI + S L+ Sbjct: 864 QGGGTDPAGIDAAIQKLRSALR 885 >gi|226306472|ref|YP_002766432.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4] gi|226185589|dbj|BAH33693.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4] Length = 890 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 324/921 (35%), Positives = 482/921 (52%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+SLI +DP L+F N+GMVPF F GQ+ P Y Sbjct: 1 MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG T RH+TFF+M GNFSFG YFK+ AI AW LLT Sbjct: 60 TSVQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +D RL+ TVY +D+EAF +W+ G+ ++I R DN+WSM GPCGPCSEIF Sbjct: 116 GYGIDPTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERF---ILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ E+ NK + LPK +IDTGMG+ Sbjct: 176 YDRGAEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I + ++TG Y + + V RVI DH R+++ LIAD Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 295 GVNPGNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ F KTL G L + ++ GD AF L+DT+G P+D+ ++ Sbjct: 355 NVAVGEETAFLKTLASGSALFENAAETVKSSGKSVIAGDQAFALHDTYGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + EQR RA+ + + + GAT+F G+D L Sbjct: 415 EAGLT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A++ G V A +GQ VEV+ D++P YAE+GG Sbjct: 473 ----------------------EAHVLALIVDGVRVPVAKAGQDVEVILDRSPLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G+ ++ DVQK A+ ++ H V++G + ++ +D + R+ + Sbjct: 511 QIADIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEITEGDVVLAHVDAEWRKGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG + Q GS P LRFD + ++ ++ + IE N+ +A N Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASN 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + + + A A GA AL G Y D VRVV + GG S LCGGTHV S+ +I Sbjct: 631 YAVNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ E S+ +GIRR+EA G + +L + L L+S LKV V RVE + E Sbjct: 687 QVTLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSH-IISEVDSKELKSVMDALQKKI 820 + + + K + + +I V ++ + V +L+S++ ++ ++ Sbjct: 747 LKVAEKELEQTKAKAVLAAAGEYVAKAKRIGSVLVIAEPAPAGVGGNDLRSLVTDIKGRL 806 Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 S ++ L+G + K ++ ++ A +L +GG G GG+P MAQ Sbjct: 807 GSEPAVVALLG-DVDGKVPFVVASSKAAQGLGVKAGELVASFGPKIGGRG-GGKPDMAQG 864 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + A+ + + + Sbjct: 865 SGSDSAGIPAALDAIRDRVGE 885 >gi|227549179|ref|ZP_03979228.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291] gi|227078739|gb|EEI16702.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291] Length = 888 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 316/923 (34%), Positives = 484/923 (52%), Gaps = 62/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59 IR F + F GHE +PS+SLI +DPTL+F N+GMVPFK F GQ+ P + Sbjct: 1 MQTHEIRERFTQHFINAGHEPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFASG 59 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKHAWALLTNPVS 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + LD +RL++TVY +D+EA +W+ G+ A++I R+ DNFWSM GPCGPCSE Sbjct: 116 EGGYGLDPQRLWVTVYLDDDEAAGIWENTIGVPAERIQRMGMEDNFWSMGVPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMG 229 I++D+G G G + RY+EIWNLVFM+ + ++ LPK +IDTGMG Sbjct: 176 IYYDRGPE-HGKEGGPIADDTRYLEIWNLVFMESIRGEGDKKGFEIIGELPKKNIDTGMG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286 +ER+A +LQ N Y+ DL + +I A+ ++TG +Y + V RVI DH R++ +I Sbjct: 235 VERVACILQGVDNVYETDLLRPVIDAAIELTGARYNAGNTRDDVRFRVIADHSRTAMMII 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+NEGRGY+LRR++RR + ARLLG T P++ + + M ++PE+ + Sbjct: 295 LDGVTPSNEGRGYILRRLLRRIVRSARLLGATAPVLEPFMNTIMDTMTPSFPEIADNRER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F KTL+ G + + + L G AF+L+DT+G P+D+ ++ Sbjct: 355 IVRVAVAEERAFMKTLESGTHRFEEAAASVKAAGAGTLPGAQAFELHDTYGFPIDLTLEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D+ FN+ + QR RA+A + G ++ + T+F+G+ L Sbjct: 415 ARESGLE-VDMDEFNREMALQRERAKADNKAKKQGNLDESLYREWVDSHPTEFVGFSELA 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 V +V+ GE V E G +VEV+ D TP YAE+ Sbjct: 474 HD-----------------------GTVIGLVRDGEKVTEVSQGDEVEVILDVTPMYAES 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G + L +TDVQK + +++H A V+ G L + +D R Sbjct: 511 GGQMGDRGRIVVGDTVLNVTDVQKVGKKLWIHKATVQNGGLDLGQGVTTEVDSSWRHGAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATHL+H AL +LG Q GS P LRFD +++ ++ +L+ I N + Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYTEQLSDEQLREIATITNQAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + + Sbjct: 631 ADFAVNTIETSLEEAKAMGAMALFGENYGDVVRVVEI----GGPFSIELCGGTHVDHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + ++ ESS+ +G RRIEA +G + + + LA+ LK + R+ ++ Sbjct: 687 IGPVAVLGESSVGSGARRIEAYSGLESFRYFSREAALASGLAAELKTPTEQLPDRIAQLT 746 Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + R + A + Q ++A + +S + + + +L+++ +++ Sbjct: 747 DRLRAAEKELAAMRRQQLSSHTAQYVEQAQQVAKFSLVSVKLPDGLGAGDLRTMASDVRE 806 Query: 819 KIQ--SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ G+++L + K + VT+ + A DL +L + G G GG+P +A Sbjct: 807 RLGARPGVVVLASSV-DGKVPFAVAVTKPAVEAGVKAGDLVKLIGGYVDGKG-GGKPDLA 864 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q G N + V L + Sbjct: 865 QGSGSNPEGLSAGFSAVRDHLAQ 887 >gi|229493550|ref|ZP_04387335.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121] gi|229319511|gb|EEN85347.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121] Length = 890 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 324/921 (35%), Positives = 482/921 (52%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+SLI +DP L+F N+GMVPF F GQ+ P Y Sbjct: 1 MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG T RH+TFF+M GNFSFG YFK+ AI AW LLT Sbjct: 60 TSVQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +D RL+ TVY +D+EAF +W+ G+ ++I R DN+WSM GPCGPCSEIF Sbjct: 116 GYGIDPTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERF---ILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ E+ NK + LPK +IDTGMG+ Sbjct: 176 YDRGAEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I + ++TG Y + + V RVI DH R+++ LIAD Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 295 GVNPGNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ F KTL G L + ++ GD AF L+DT+G P+D+ ++ Sbjct: 355 NVAVGEETAFLKTLASGSALFENAAETVKSSGKSVIAGDQAFALHDTYGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + EQR RA+ + + + GAT+F G+D L Sbjct: 415 EAGLT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVS- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A++ G V A +GQ VEV+ D++P YAE+GG Sbjct: 473 ----------------------EAHVLALIVDGVRVPVATAGQDVEVILDRSPLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G+ ++ DVQK A+ ++ H V++G + ++ +D + R+ + Sbjct: 511 QIADIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEITEGDVVLAHVDAEWRKGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG + Q GS P LRFD + ++ ++ + IE N+ +A N Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASN 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + + + A A GA AL G Y D VRVV + GG S LCGGTHV S+ +I Sbjct: 631 YAVNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ E S+ +GIRR+EA G + +L + L L+S LKV V RVE + E Sbjct: 687 QVTLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSH-IISEVDSKELKSVMDALQKKI 820 + + + K + + +I V ++ + V +L+S++ ++ ++ Sbjct: 747 LKVAEKELEQTKAKAVLASAGEYVAKAKRIGSVLVIAEPAPAGVGGNDLRSLVTDIKGRL 806 Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 S ++ L+G + K ++ ++ A +L +GG G GG+P MAQ Sbjct: 807 GSEPAVVALLG-DVDGKVPFVVASSKAAQGLGVKAGELVASFGPKIGGRG-GGKPDMAQG 864 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + A+ + + + Sbjct: 865 SGSDSAGIPAALDAIRDRVGE 885 >gi|116071953|ref|ZP_01469221.1| alanyl-tRNA synthetase [Synechococcus sp. BL107] gi|116065576|gb|EAU71334.1| alanyl-tRNA synthetase [Synechococcus sp. BL107] Length = 887 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 326/908 (35%), Positives = 500/908 (55%), Gaps = 53/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F+Q+ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ++ T Sbjct: 16 TGAEIRAAFLCFYQERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ F +D Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVFGIDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ N Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G P ++ + A + A+P +++ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLIGINRPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL K ++G AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 370 ETLERGEKLLSEVLDSKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E+QR RA+A ++ + + I + AT F GY +L Sbjct: 427 EAMEQQRQRAKAAAVSIDLTLQDAID-QVVATQNATAFQGYQVLEQP------------- 472 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+V GE A +G V++V + TPFY E GGQ+GD G G + Sbjct: 473 ----------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + ++ +FVH +ERG L ++ +D RR+ NH+ATHLL AL Sbjct: 523 -IVAIESVSRSRDVFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD + +T+ +L+ IE +N IA+ ++ M + A Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLEQIETLINGWIAEAHGLLVEEMAIDQA 641 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D V D S LCGGTHV++T EI L IV ES + AG Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L ++ +K L K G +V RV + +E + + Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756 Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830 +L V I + + VD L+ +L ++ G +++G Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGAGLQGAAQSLAAQLGDGAAVVLGGLPDP 816 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + K ++ +D++ + A AK+ GGGG GGRP++AQ+GG +G A+ Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGG-GGRPNLAQAGGRDGAALAGAL 875 Query: 890 AGVASFLK 897 + L+ Sbjct: 876 ETARTELE 883 >gi|116670825|ref|YP_831758.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24] gi|205829979|sp|A0JX88|SYA_ARTS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116610934|gb|ABK03658.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24] Length = 892 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 320/924 (34%), Positives = 486/924 (52%), Gaps = 64/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+ Y Sbjct: 1 MKSQEITKRWIDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYNRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 60 TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L +L++TVY+ED+EA +LW K +G+ A++I R+ DN+WS + GP GPCSEI+ Sbjct: 116 GYGLPPEKLWVTVYEEDDEAEQLWLKNTGMPAERIQRMGKADNYWSTGQPGPAGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +D+G G G + RY+EIWNLVFMQ++ N + + PK +IDTG+G+ Sbjct: 176 YDRGPSY-GVEGGPIADENRYVEIWNLVFMQYQIDNVRSKVDFDITGELPKKNIDTGLGM 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281 ER+A +LQ+ N Y+ D + +I + ++G +Y + V RV+ DH+RS Sbjct: 235 ERLAMILQDVENMYETDQVRPVIDKAAALSGKEYTSAESADDPHHTDDVRMRVVADHIRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LIADG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 295 ALMLIADGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEKACLPDLLPASRDAMKGVYPVVE 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400 I +E++ F +T+ G L+ + + L+G AF L+DT+G P+D+ Sbjct: 355 TDFDRISRIAYAEEKAFLRTIASGTARLEDAVKDSKAAGQPLSGADAFALHDTYGFPIDL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D F + + EQR RA+A + G + F G T F GY Sbjct: 415 TLEMAEEAGLK-VDEPEFRKLMLEQRQRAQADAKGKKGSHADLSAFQELLAEGETVFTGY 473 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 L G S V+ I+ G V +A +G+++E+V +TPF Sbjct: 474 TELAG-----------------------ESKVRGILSGGRKVSQASTGEEIELVLAETPF 510 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAEAGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + + + +D + R Sbjct: 511 YAEAGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVQAAVDRERR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 H+ TH++H AL ILG Q GS LRFD + +++A IE+ N Sbjct: 571 HSAEQAHTGTHIVHAALHQILGPEALQRGSYNKAGYLRFDFAWGEGLSAATRSEIEEVSN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N V T++M +A A GA AL G Y + VRVV + G S LCGGTHV+ Sbjct: 631 LAIRNNFQVETKVMALAEAKALGAMALFGENYGNEVRVVEI----DGAWSRELCGGTHVA 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T I L ++ + S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 687 NTSLIGSLSLLGDQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTEMLKVPSGLLADRI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD-SKELKSVMD 814 + + ++ + + + + A V ++H +V + +L+ + Sbjct: 747 ATTLTKLKTVEKELERLRKEQLTAAAAQLVGTAKDAAGVKVIAHDAGQVSGADDLRGLAL 806 Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 L+ ++ S + + G+S ++ ++ A L RL+A +LGGGG GG+ Sbjct: 807 DLRTRLGSEAAAVAVAGVSNDRPVILVATNEAARAAGVKAGALVRLAAGILGGGG-GGKD 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 +AQ GG + K A+ V + Sbjct: 866 DVAQGGGTDAAKVPAALTAVVDAI 889 >gi|191637661|ref|YP_001986827.1| alanyl-tRNA synthetase [Lactobacillus casei BL23] gi|301065839|ref|YP_003787862.1| alanyl-tRNA synthetase [Lactobacillus casei str. Zhang] gi|190711963|emb|CAQ65969.1| Alanyl-tRNA synthetase [Lactobacillus casei BL23] gi|300438246|gb|ADK18012.1| Alanyl-tRNA synthetase [Lactobacillus casei str. Zhang] gi|327381717|gb|AEA53193.1| Alanyl-tRNA synthetase [Lactobacillus casei LC2W] gi|327384883|gb|AEA56357.1| Alanyl-tRNA synthetase [Lactobacillus casei BD-II] Length = 881 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 316/917 (34%), Positives = 484/917 (52%), Gaps = 61/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 4 MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K F Sbjct: 64 TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +RLY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF+D+ Sbjct: 120 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175 Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ E RY+EIWN+VF + P +IDTGMGLER+ Sbjct: 176 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q ++ DLF +I+A+E+++ K + V+ ++I DH R+ +F I DG L Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE+ RF +TLD G+ LL+ +++ L +D + G AFKL+DT+G P+++ + G Sbjct: 356 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 415 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + + QR RAR S ++ L ++F G+ L Sbjct: 416 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 470 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++ IV ++ + G +++FD+TPFYAE GGQ+ Sbjct: 471 --------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 509 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + A H + +G L T L++D R+++S+NH+ Sbjct: 510 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLETGQQYWLSVDPLRRKKVSLNHT 569 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I LP Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 629 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M E+A GA A+ G KY VR+V + G +++ GGTH +++ + L Sbjct: 630 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSALGLF 684 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV +V ++ + Sbjct: 685 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 744 Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q A + +L + + ++ + ++ + EL+ + D + K S Sbjct: 745 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I++L G KA++L+ V + F A DL + A +GGGG GGRP MAQ+GG N Sbjct: 805 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 862 Query: 882 GNKADQAIAGVASFLKK 898 A++ + + + Sbjct: 863 PAGIPAALSEAKTVISQ 879 >gi|324013703|gb|EGB82922.1| alanyl-tRNA synthetase [Escherichia coli MS 60-1] Length = 784 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 343/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + E+ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDATALPAALASVKGWV 779 >gi|295396919|ref|ZP_06807043.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563] gi|294974853|gb|EFG50556.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563] Length = 880 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 332/920 (36%), Positives = 501/920 (54%), Gaps = 62/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F+Q GH + PS+SL+P DP+L++ NSG+ K F G P Sbjct: 1 MKQLTSAEIRQKWLDFWQSKGHSVEPSASLVPVQDPSLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHT FEMLGNFS G YFK I AW+ LT K Sbjct: 61 PRITNSQKSIRT----NDIENVGVTARHHTLFEMLGNFSIGDYFKAEVIPWAWEFLTDEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+T Y ED E +LW+K +GLS + + + DNFW + GPCGP +EIF Sbjct: 117 WLGLDPEKLYMTYYPEDTETVELWRKATGLSDNHYVPV--EDNFWDLG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G E ERY+EIWN+VF QF E L +IDTGMGLE Sbjct: 174 YDRGVKYQDLEDSDPEMYPGGENERYLEIWNIVFSQFNHMPNGEYVPLKHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +V+Q+ N++ DLF +I+ E + T +KY + V+++VI DH+R+ +F I+D Sbjct: 234 RMTSVIQDAPTNFETDLFLPIIKEIETLGTAVKYGDKPETDVSYKVIADHVRAVTFAISD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+NEGRGY+LRR++RRA+ +AR LG + + L+P + M YPE+ + I+ Sbjct: 294 RALPSNEGRGYILRRLIRRAIMHARRLGIKDNFLTKLVPVVADIMADFYPEVKADQNFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +T++ G ++ V+S +++++G AFKLYDT+G PL++ Q+ L Sbjct: 354 DVIKTEEDRFNETINEGEAIIQEVISTLEAEHNKVMSGAQAFKLYDTYGFPLELTQEYLE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G +D+ F +A++ QR RARA + L E + ++GYD L Sbjct: 414 EVG-IDVDLSGFEEAMKAQRERARAARKDSTGMAVQSEV--LSEIDVTSSYVGYDQL--- 467 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V + + IV +V A +G +V +V +QTPFYAE GG Sbjct: 468 --------------------VVETRINTIVLGDALVSAAEAGDEVYLVAEQTPFYAEMGG 507 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ DTG + + + + +A H + + + ++ L +D + + Sbjct: 508 QIADTGDVLDEDGQLIGHVVNVVRAPNGQHLHEVKLAAAIVLDQTVQLVVDRRRHHSIEK 567 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS +T D LRFD +H +T EL +E VN+ IA+ Sbjct: 568 NHTATHLLHQALKDVLGDHANQAGSLVTADHLRFDFSHFGQVTDEELAEMEAKVNEAIAE 627 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PVVT + + ++A A+GA AL G KY VR+V + S LCGGTHV +T EI Sbjct: 628 AFPVVTTVTSIDEARAAGAQALFGEKYGSEVRMVDI-----NHWSIELCGGTHVGNTAEI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L I SES I AG+RRIEA+T A Q+ LK +A+ LK + N+V R+++ Sbjct: 683 GLFKITSESGIGAGVRRIEAVTSLAAIQEYKIQENILKQIAANLKAGKFLNIVSRLQQFR 742 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE+++ + ++N + + ++ + +L+ + D ++K Sbjct: 743 EEHKETLQQLNALRDKMNAQAAGQIFDHVETVGAYTVIAEHVPNRSMDDLRKIADEWKQK 802 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S I++L S + KA++LI V +D + A DL + A +GGGG GGRP MAQ+G Sbjct: 803 GSSDILVLA-TSVDDKANLLIAVGQDAVKAGVKAGDLIKQVAPKIGGGG-GGRPDMAQAG 860 Query: 879 GPNGNKADQAIAGVASFLKK 898 G ++A+A + K Sbjct: 861 GKKPAGIEEALAFAKEIIGK 880 >gi|255534656|ref|YP_003095027.1| alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10] gi|255340852|gb|ACU06965.1| Alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10] Length = 893 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 321/939 (34%), Positives = 485/939 (51%), Gaps = 97/939 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL++FQ GH ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + Sbjct: 1 MTSQQIRQQFLDYFQSKGHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKDPKAPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDLD+VGR HHT FEMLGN+SFG YFKE AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKEEAIGFAWELLTEVYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D++A+ WKK + +II DNFW M E+GPCGPCS Sbjct: 121 KEDLYVTVFEGDSVEDLARDQDAYNFWKK--HIDEGRIINGNKKDNFWEMGESGPCGPCS 178 Query: 174 EIFFDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G L + + + +EIWNLVFM+F ++ LP +DTGMG Sbjct: 179 EIHVDLRTAEEKGMVSALDLVNNDHPQVVEIWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFL 285 ER+ LQ KT+NYD D+F LIQ E+++G++Y + RV+VDH+R+ +F Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIQKVEEISGLRYTGILTDEKDIAIRVVVDHIRAVAFA 298 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N G GYV+RRI+RRA+ YA LG E + L+ L TEMGS + EL + + Sbjct: 299 IADGQLPSNGGAGYVIRRILRRAISYAYRFLGMKEAFLFELVGVLQTEMGSYFAELSRQQ 358 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402 L+ E ++ E+ F KT++ GL +D V++ ++ L G F+LYDT+G P D + Sbjct: 359 KLVTEVIKEEEISFLKTIELGLKRIDLVINDTISKNEKTLPGAAVFELYDTYGFPAD-LS 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 I+ ID FN+ + +Q+ R++ + +K++ + + QF+GYD Sbjct: 418 RIIAEEQQLTIDEAGFNEEMAKQKQRSKKS-------SAQKVYDWVILEEKEQQFVGYDD 470 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 ++ RKV E G+ ++V ++PFY Sbjct: 471 TETETYITRYRKV----------------------------ENKDGEYYQIVLSKSPFYP 502 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-----------------------FVHHAI 559 E GGQ+GD G + + +K + ++ Sbjct: 503 EGGGQVGDHGILVPSYAKNFNIVSPQKFLDQLASENNSDRPSEVIEVLDTRKENNLIISL 562 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 ++ ++ RR NHS THLLH AL +LG+HV Q GS + P+ LRF Sbjct: 563 IKEMPKDAGAVFYAKVNRDERRNTQANHSVTHLLHEALREVLGTHVEQKGSFVGPEYLRF 622 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRV 678 D +H +T ELK +E+ VN I +N+ + R + +A+ GA AL G KY D VR+ Sbjct: 623 DFSHFAKLTDEELKLVEEKVNTKIKENISLEEFRNIPISEAMEKGAMALFGEKYGDNVRM 682 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 + S LCGGTHV +T EI I SESS AGIRRIEAI G +A ++ Sbjct: 683 IQFG------TSRELCGGTHVRNTAEIGFFKIQSESSTAAGIRRIEAIAGDQATAYFNNL 736 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793 + + K +++ LK ++ VE++ EE L+ K + + + A Sbjct: 737 ESQFKEISALLKTK--DISKTVEKLLEENAALKSEIEAFKKEKAKAETGNWKNDFTESAG 794 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853 + +S +DS +K ++ L+K++ +I+++ + K + + V+ DL +++A Sbjct: 795 KKLLVKKVS-LDSASVKDIVFQLKKEVAGSVIIIIS-DADGKPMITVGVSADLETQYHAG 852 Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 ++ + AK + GGG GG P A +GG N D+A Sbjct: 853 NIVKELAKEIQGGG-GGNPGFATAGGKNLAGIDEAYNKA 890 >gi|163754032|ref|ZP_02161155.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1] gi|161326246|gb|EDP97572.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1] Length = 870 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 330/919 (35%), Positives = 484/919 (52%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FLEFF+ H+++PS+ ++ NDPTLMF NSGM PFK F G P + Sbjct: 1 MKSQDIRAKFLEFFKSKTHQIVPSAPMVTKNDPTLMFVNSGMAPFKEYFLGNGTPKSNRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D Sbjct: 61 ADTQKCLRVSGKHNDLEEVGYDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYGID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA+ LWK+I + ++I+ DNFW M E GPCGPCS Sbjct: 121 KDILYVTVFEGSDEDGLKLDQEAYDLWKEI--VPEERILMGNKADNFWEMGEQGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + +EIWNLVFMQ+ ++ + LP +DTGMG Sbjct: 179 EIHVDIRSEEEKAKIPGADLVNMDHPQVVEIWNLVFMQYNRKADKSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ VLQ+ +NYD D+F LI+ E +T +KY N V RVI DH+R+ SF IA Sbjct: 239 FERLCMVLQDVKSNYDTDVFTPLIREIETITNVKYGTNEKVDVAIRVIADHVRAVSFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N RGYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL + K L Sbjct: 299 DGQLPSNNTRGYVIRRILRRAVRYGFTFLNKKEPFIYRLVDVLDNKMGKAFPELKEQKQL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 I+ ++ E++ F +TLD+GLVLLD V+ ++ ++++G F+L DT+G P D+ + IL Sbjct: 359 IQNVIKEEEQSFLRTLDQGLVLLDRVIENVN-GKVVSGKKVFELKDTYGFPEDLTELILR 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 RGL + F+ AL+ Q+ G + + + + + +F+GYDLL Sbjct: 418 ERGLT-YNEEEFDAALKIQQE------GGRKATAIQADDWVVLLEDEEEEFVGYDLLEVD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RK +E G + ++VF+ TPFY E GG Sbjct: 471 VRLTRYRK---------------------------IETKKEGVQYQLVFNMTPFYPEGGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + KK + +H + + L +D + R + + N Sbjct: 504 QVGDKGYVETSNGDVIYVLDTKKENNLIIHI--TKNLPKKLNEPLRAVVDKKQRERTAAN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ILG+HV Q GS + LRFD +H +T EL+ +E+ VN I Sbjct: 562 HTATHLLHQALREILGTHVEQKGSAVHSKYLRFDFSHFSKLTVEELRDVENFVNSRIEGK 621 Query: 647 LP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LP R E+A+A GA AL G KY D VR + S LCGGTHV +T +I Sbjct: 622 LPLEEKRNRPVEEALADGALALFGEKYGDTVRSIRFG------KSIELCGGTHVQNTADI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I SE ++ AGIRRIEAIT + + + L + + V V ++ + Sbjct: 676 WHFKIKSEGAVAAGIRRIEAITYDATKEFYFENNRAYYEIKDVLN-NPKDAVKAVTDLKD 734 Query: 766 EYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E KL+ K K + +L I V F++ + ++D +K++ L +I Sbjct: 735 ENAKLRKQIENLLKDKAKNLKGELKNELKDINGVQFLAKQV-DLDQNGIKNLAFELGGEI 793 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++ + + + E K + ++++L+ F+A + R K++ GGG GG+P A +G Sbjct: 794 KN-LFLFFATATENKVMLTCYISKELVSERGFDAGKVVRELGKLIHGGG-GGQPFFATAG 851 Query: 879 GPNGNKADQAIAGVASFLK 897 G N +AI V ++K Sbjct: 852 GKNPGGIPKAIERVKEYVK 870 >gi|299782999|gb|ADJ40997.1| Alanyl-tRNA synthase [Lactobacillus fermentum CECT 5716] Length = 882 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 315/915 (34%), Positives = 488/915 (53%), Gaps = 61/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR +L+FF ++GH +PS SL+P NDPTL++ NSG+ KN F G+ P +T Sbjct: 8 NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ AI AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A + W +G+ D + + DNFW + + GP GP +E+F+D+G Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHL--LADQDNFWDIGQ-GPSGPDTEVFYDRG 179 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + + E RY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ E + K G N V ++I DH+RS +F I DG LP Sbjct: 240 IFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RR++ + LG EP + ++P + M YP++++ I + Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF RGL LL+ V+ + + ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEDRFSADFKRGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W + + ++++GY L Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTD---ESKYVGYTDLVVD--- 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ V + G+ ++A GQ V+V+FDQTPFYAE GGQ+ Sbjct: 473 -------------------NAKVIGLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQVA 513 Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG I + ++ T + A H + ++ L +D ++ NH+ Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELTAPIKKGARYKLVVDRARHLKIEKNHT 573 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + LRFD H +T +LK +ED VN+ I + +P Sbjct: 574 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEIP 633 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A GA AL KY D+VRVV + G ++ CGG HV +T EI L Sbjct: 634 VTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGLF 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 IVSE + AG+RRIEA+T A + + + + L +A+ LKV V RV E+ ++ Sbjct: 689 KIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQL 748 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ + + +L + + A ++ + +L+ + D ++K S Sbjct: 749 KEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDYS 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L + + KA++L+ V + L A DL + A + GG GGGRP +AQ+GG N Sbjct: 809 DVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKNP 866 Query: 883 NKADQAIAGVASFLK 897 +A+ + F+ Sbjct: 867 AGISEALKLASQFMN 881 >gi|194476839|ref|YP_002049018.1| alanyl-tRNA synthetase [Paulinella chromatophora] gi|171191846|gb|ACB42808.1| alanyl-tRNA synthetase [Paulinella chromatophora] Length = 891 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 331/909 (36%), Positives = 507/909 (55%), Gaps = 53/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF K GH+ + S+ LIP +D T++ T +GM+PFK IF G+E+P + Sbjct: 13 MTGAEIREAFLDFFAKRGHQRMASALLIP-DDSTVLLTIAGMLPFKPIFLGREQPPALSA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKC+R ND++NVG+T RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F LD Sbjct: 72 TSSQKCIRT----NDIENVGKTARHHTFFEMLGNFSFGNYFKEQAIIWAWELSTEVFGLD 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L ++++ ED EA +W+ + G++ +IIR+ DNFW+ GPCGPCSEI++D Sbjct: 128 PANLVVSIFQEDNEAALIWQNLIGVNPKRIIRMGAKDNFWASGPIGPCGPCSEIYYDFHP 187 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + G + E+ R+IE +NLVFM+ ++ L +IDTGMGLERMA +LQ+K+ Sbjct: 188 DL-GHDDINLEDDSRFIEFYNLVFMESNCDSQGNLTPLENKNIDTGMGLERMAQILQKKS 246 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRG 298 NNY+ DL LI+ + + G+ Y N + +VI DH R+ S LI DG+ +N GRG Sbjct: 247 NNYETDLIFPLIKKAASLAGIDYSEVNEKGKISLKVIGDHSRAISQLICDGVSASNLGRG 306 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRR++RR + + RLLG + ++ + A M AYP+L + + +I L E+ RF Sbjct: 307 YILRRLLRRVVRHGRLLGINDHFLVAMGEASIELMSKAYPQLEEKRDIILNELAQEEARF 366 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL+RG LL +L +++ ++G+ AF+LYDT+G PL++ Q+I G +D+ F Sbjct: 367 LETLERGEKLLSDILKS--ENQQISGEQAFELYDTYGFPLELTQEITQEHGRT-VDVAGF 423 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A++ QR RA+ + + I + E T F GY++L S Sbjct: 424 EVAMKAQRQRAKEAIVTIDPTLRSTI-EGIAESIKPTLFFGYEVLDRSC----------- 471 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 V A++ + E+V+EA +G V+V+ D TPFY E+GGQ+GD G +G Sbjct: 472 ------------QVVALIVKDELVQEASTGDVVKVILDGTPFYGESGGQVGDRGMLLGSE 519 Query: 539 IR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + I + + +G+F+H +++G LR ++ +D RR+ +H+ATHLL Sbjct: 520 TEKTSLIVIIENVSRNQGLFIHSGRIKKGTLRIGDLVIAKVDTHLRRRAQAHHTATHLLQ 579 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++ + +SQ GS + D LRFD ++ I+ +L+ IE+ +ND I + V M Sbjct: 580 SALKQLVDASISQAGSLVDFDRLRFDFSYPGAISLEKLEKIENLINDWINEIHRVEVTEM 639 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E A +GA A+ G KY VRVV++ S LCGGTHVS+TGEI L I+SE+ Sbjct: 640 KLEQAKVNGAIAMFGEKYGAYVRVVNIPN-----VSMELCGGTHVSNTGEIGLFKIISET 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +GIRRIEAI G +L +D +K L K V+ RV + +E + Sbjct: 695 GVASGIRRIEAIAGTAVLPYLNDRDRLVKELGDHFKAPPSEVMVRVIALQDELKTTNKAL 754 Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLV 828 + +L + + D + + V + L + LQ+++ + ++L Sbjct: 755 LTARSELISAKSAILASQVELVGDFQILVSSFTGVQAALLSTAAKQLQEQLGDNTAVLLG 814 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I +E K S + +D++ R NA + AK+ GGGG GGR ++AQ+GG N + Sbjct: 815 SILEEGKVSFVAAFGKDVVQRGLNAGKVVNHIAKLCGGGG-GGRANLAQAGGRNLKSFES 873 Query: 888 AIAGVASFL 896 A+ S L Sbjct: 874 ALKIAKSEL 882 >gi|313676999|ref|YP_004054995.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126] gi|312943697|gb|ADR22887.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126] Length = 876 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 315/932 (33%), Positives = 489/932 (52%), Gaps = 92/932 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FFQ+ H+++PS+ ++ +DPTLMFTN+GM FK+ F G + V Sbjct: 1 MTSSEIRKKFLNFFQEKEHKIVPSAPMVIKDDPTLMFTNAGMNQFKDYFLGNKVAEATRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ +W+LLT F L Sbjct: 61 TDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWSWELLTDIFKLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ D+EA+ WK + +I++ NDNFW M +TGPCGP S Sbjct: 121 KERLYVTVFEGDKADGIPFDQEAYDFWK--GHIDESRILKGDKNDNFWEMGDTGPCGPAS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G + + +EIWNLVF+QF ++ LP IDTGMG Sbjct: 179 EIHVDLRDEADIAKIPGKDLVNNDHPLVVEIWNLVFIQFNRKADGSLHALPAQHIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ +Q K +NYD D+F L+ +++G KY + + RVIVDH+R+ S I+ Sbjct: 239 FERICMAIQNKKSNYDTDVFTPLLDELAKISGKKYGELSKIDIAFRVIVDHIRAISLSIS 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y L EP + L+P L + +PEL + L Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYGYTFLDLKEPFLFKLVPILAKQFEEVFPELKAQQEL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 +E+ ++ E+ F +TL+ GL L+ + + L + ++G VAF+LYDT+G PLD+ I Sbjct: 359 VEKVIKEEETAFLRTLENGLKRLESIKAELSSSGNATISGAVAFELYDTYGFPLDLTALI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D F QA+ EQ++R+++ + E + + + +F+GYD ++ Sbjct: 419 AKENGLT-VDEKGFEQAMNEQKNRSKSAAKM------ETGDWQIVNEGRDVEFVGYDEVK 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R V + +++++V D+TPFYAE+ Sbjct: 472 ADAKILRYRSVKNKNK----------------------------EQIQLVLDKTPFYAES 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GDTG +++ D +K+ + I + + + + ID RR++ Sbjct: 504 GGQIGDTGILKVSNETIKVLDTKKENDLIVHFVDKI---PAQLDAKVHAQIDNDRRRKIV 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHL+H AL +LG HV Q GS ++ LRFD +H +T E+ +E VN+ I Sbjct: 561 YNHSATHLVHAALREVLGDHVQQKGSLVSDKLLRFDFSHFSKMTDEEILKVERRVNEKIR 620 Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N+P R + E+A A GA AL G KY D VR+++ + +S LCGG HV +TG Sbjct: 621 ENIPQQEERNIPIEEAKAKGAMALFGEKYGDTVRMITFDPN----YSVELCGGVHVPATG 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I I +E+S+ AGIRRIEA+TG++A + + Q+ LK + + LK S ++ VE++ Sbjct: 677 NIGQFKITTETSVAAGIRRIEAVTGEKAEEYHLDQEAILKQVNALLK-SPKDLAQAVEQL 735 Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E +LQ K + + + K D++ + I+ ++ LK + L+ Sbjct: 736 MKEKNELQKSLEKEQSKQAGALKDELIKNAEKQNDISVIISEIALPNADALKKLSFELKN 795 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGG 866 ++ S +L + K + +V++E+L+ NA + R AK + Sbjct: 796 EVDSLFAVLA-CDVDGKPQISVVISENLVESKDLNAGKIIRDLAKNIQGGGGGQAFFA-- 852 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +GG Q + + K+ Sbjct: 853 ---------TAGGKKLEGLPQVVLQAKTMAKE 875 >gi|124009945|ref|ZP_01694610.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134] gi|123984029|gb|EAY24407.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134] Length = 883 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 309/927 (33%), Positives = 483/927 (52%), Gaps = 77/927 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +IR FL+FF++ H+++ S+ L+ NDPTLMFTN+GM FK+ F G + + V Sbjct: 1 MDSKTIRQKFLDFFREKQHQIVDSAPLVVKNDPTLMFTNAGMNQFKDFFLGTKTAENRRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ F+L Sbjct: 61 ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVFELP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ D+EAF +WKK ++ D+II + DNFW M ETGPCGPCS Sbjct: 121 KDRLYVTVFEGDKGDSLEPDQEAFDIWKKY--INEDRIIYASKEDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G +++ + +EIWNLVF+QF + + LP +DTGMG Sbjct: 179 EIHIDLRDANEIAKTPGKGLVNQDDPQVVEIWNLVFIQFNRMANKSLQNLPDKHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+A +Q K +NYD D+F+ +IQ +V G +Y + RVI DH+R+ SF I Sbjct: 239 FERLAMAIQGKKSNYDTDVFQPMIQYLAKVAGTQYGKEEKIDIALRVIADHIRAISFAIT 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP N G GYV+RRI+RRA+ Y LG+ EP + L+P L + +PEL Q + Sbjct: 299 DGQLPGNNGAGYVIRRILRRAVRYGYSYLGFNEPFLHTLVPMLSEQFAEVFPELKQQQAH 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDI 404 + + E++ F +TL GL LLD V++ + + + G F L D +G P D+ + Sbjct: 359 VSNIIIQEEKSFLRTLANGLKLLDEVVAKTKEKQQKEIAGIDVFTLSDRYGFPSDLTNLV 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL GID F + L++Q+ R++ + + G ++FIGYD Sbjct: 419 ASENGL-GIDEAGFKEELKKQKLRSQQDAQKSTGDW-------IVLNSGESEFIGYDETS 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R++ E ++ E+V + TPFYAE+ Sbjct: 471 SFTKVLRYREI----------------------------EVKKKKQYEIVLETTPFYAES 502 Query: 525 GGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT----EMSLVLTIDYQ 578 GGQ+GDTG + + + + K E + H + + ++ + + Q Sbjct: 503 GGQVGDTGSLEFRAEAGTVTVPVIDTKKENDLIIHYSPKNDFTKIADLAQVEVFAQVKEQ 562 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 RR NHSATHL+H AL +LG HV Q GS + LRFD +H+ +T E+ +E Sbjct: 563 RRRLTENNHSATHLVHSALRQVLGQHVEQRGSLVNDVILRFDFSHNAKMTDEEIAEVERI 622 Query: 639 VNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I +N+ + R + +E + GA L G KY D VRV++ + +S LCGG Sbjct: 623 VNEKIRENIALDERRAVPYKEAIESLGATGLFGEKYGDTVRVITFDEN----YSRELCGG 678 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 HV STG I I++E+S+ +G+RRIEA+T +A ++ Q + + LK + ++ Sbjct: 679 CHVPSTGVIGFFKIITEASVASGVRRIEAVTATKAEEYVQNQVALVNQVKDLLK-NPKDL 737 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKS 811 +E + +E L + Q + +NF++ +S + LK+ Sbjct: 738 PKAIESLIKEKTDLSKQIEVLENQQVQALKQGLLDTVKQTNGINFIAQKVSLPSADALKN 797 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869 + ++ K Q + M++ + K + ++++++L+ NA + + A+ + GGG G Sbjct: 798 LAFDVR-KNQDNLFMVLASDIKGKPQIAVMISDNLVEEKSLNAGKIVKELAREIKGGG-G 855 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+ A +GG + D+ + F+ Sbjct: 856 GQAFFATAGGKDATGLDKVVERAEEFV 882 >gi|332170337|gb|AEE19592.1| alanyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 870 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 333/918 (36%), Positives = 486/918 (52%), Gaps = 72/918 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R FL+FF+ H ++PS+ ++ +DPTLMFTN+GMVPFK F G P + Sbjct: 1 MKSQEVRKQFLDFFESKKHTIVPSAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNARL 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+ LT+ +D Sbjct: 61 SDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY++V++ D+EAF +WK+ + D+II DNFW M GPCGPCS Sbjct: 121 KDSLYVSVFEGDKEDGLDRDQEAFDIWKQR--IDEDRIIDGNKKDNFWEMGAQGPCGPCS 178 Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + + G + + +EIWNLVFMQ+ + LP +DTGMG Sbjct: 179 EIHVDIRSAEEKAKVDGKTLINMDHPHVVEIWNLVFMQYNRLADGSLVKLPNQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIA 287 ER+ VLQ +NYD D+F L+ E +T K + + RVI DH+R+ SF IA Sbjct: 239 FERLCMVLQGVQSNYDTDVFTPLMSEIETITNSKCGNDEEIDIAVRVIADHVRAVSFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K L Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGFTFLDMKEPFIYKLVATLVKQMGDAFPELKSQKNL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R E+ F +TLD+GL+LLD V++ + ++GD AF+LYDT+G P+D+ IL Sbjct: 359 MTNVIREEEASFLRTLDKGLLLLDNVIADTK-GDTVSGDKAFELYDTYGFPIDLTALILS 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 + L +D F AL+EQ+ R+RA + E +++ + +F+GYD L Sbjct: 418 EKNLK-LDEKGFEAALKEQKDRSRAATK------VETDDWNILHEDAEEEFVGYDTLETP 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RK E G+ ++VF+ TPFY E GG Sbjct: 471 VKITRYRKT---------------------------ESKKDGELYQLVFNLTPFYPEGGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + KK + +H A + T+ + +D + R + ++N Sbjct: 504 QVGDKGYLETPNGEVVYIIDTKKENNLIIHLA--KNLPRSTDGTFKAVVDAKQRSRTAVN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH L +LG+HV Q GS + LRFD H +T ELK +ED VN I +N Sbjct: 562 HTATHLLHQGLRKVLGTHVEQKGSMVHSGNLRFDFAHFSRVTKEELKEVEDFVNARIREN 621 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L + R + + A+ GA AL G KY D VR + S LCGGTHV +TG+I Sbjct: 622 LSLEEQRGIPYDQAVQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I SE ++ +GIRRIEAIT A+ + + E + + LK +Q V + + + Sbjct: 676 WHFKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPV-KAITSLLD 734 Query: 766 EYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E L+ K K Q DL+ I V+F++ + ++D+ +K + L + Sbjct: 735 ENAALKKQVEALIKEKAQNLSGDLAKEFTDIDGVDFLAKKV-DLDAGAIKDLAFKL-GEN 792 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + +L +E KA + ++++L+ + NA + R K + GGG GG+P A +G Sbjct: 793 KDNVFILFATEQEGKALLSCYISKELVASKQLNAGTVVRELGKHIQGGG-GGQPFFATAG 851 Query: 879 GPNGNKADQAIAGVASFL 896 G N D AIA V ++L Sbjct: 852 GKNPAGIDAAIAEVKNYL 869 >gi|182418956|ref|ZP_02950213.1| alanyl-tRNA synthetase [Clostridium butyricum 5521] gi|237667051|ref|ZP_04527035.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377239|gb|EDT74807.1| alanyl-tRNA synthetase [Clostridium butyricum 5521] gi|237655399|gb|EEP52955.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 879 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 324/911 (35%), Positives = 513/911 (56%), Gaps = 50/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+FF+ GH L S SL+P ND +L+ N+GM P K FTG ++P Sbjct: 1 MKFTKTNDLRDAYLKFFESKGHLKLDSFSLVPKNDNSLLLINAGMAPLKPYFTGLQEPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VTT QKCVR G D++NVG T+RH TFFEMLGNFSFG YFK+ I AW+ LT+ Sbjct: 61 KRVTTCQKCVRTG----DIENVGITSRHGTFFEMLGNFSFGDYFKKEVIPWAWEFLTEVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + +LY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F Sbjct: 117 EMPKDKLYVTIYLDDDEAYEFWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFS 175 Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 + + +P E + ++ IE+WNLVF QF+ K L +IDTGMGLER+A V Sbjct: 176 RTDDVPKNAEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +QEK + ++ID ++++ + G++Y ++ R+I DH+RS +F+I+D I+P+N Sbjct: 236 MQEKNSIFEIDTLENILNEVANLAGVRYGENKKTDISLRLITDHIRSITFMISDDIMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + + LG + + +L + + AY EL + I++ ++ E Sbjct: 296 EGRGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDSKEAYAELEAKREYIKKVIKIE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F +TLD G+ +L+G +S L +IL+G FKLYDT G P+++ ++IL G + Sbjct: 356 EDKFRETLDAGIEILNGFISELKENNKKILSGAEGFKLYDTFGFPMELTKEILEDEGFS- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F++ ++ QR RAR + T+F GY Sbjct: 415 LDEDAFHEEMKIQRERARNARKVSNYMGADVKTSDAISADVETEFDGYTN---------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V+ ++ + + G K +V D TPFYAE GGQ+GDTG Sbjct: 465 -------------NQLQGKVEVLIDGEDFADSLTEGNKGILVTDVTPFYAEMGGQIGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + ++ D +K G VH V G ++ ++ L ID + R ++ NH+ATHL Sbjct: 512 LIYNDSFKAKVVDTKKNMGGKIVHFVEVLSGEVKINDTVTLEIDNERRERIRKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LGSHV Q GS +T + LRFD +H + ++ ++ +ED VN+ I PVVT Sbjct: 572 LDRALVKVLGSHVHQAGSLVTDERLRFDFSHFEGLSEEDILKVEDLVNEAIMSVTPVVTE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ DA SGA + KY D+VRVV+ G +S LCGGTH+ +TG+I L I+S Sbjct: 632 VMDLNDAKNSGAIGIFDDKYGDKVRVVT-----AGEYSKELCGGTHIDNTGKIGLFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG+ A + ++E LK LK +Q + ++E+ +E ++ + Sbjct: 687 ESGIAAGTRRIEAVTGKEAVKFINEKEELLKEACGKLKCTQKEITSKIEQNLKEIKEKEK 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K + L S ++ +N +S+ + +VDS L+ V + ++ K+++ +++L Sbjct: 747 EISALKAKFAAMGLDDIIASSKEVKGINVVSYELKDVDSDTLREVCEKVKDKVENSVVLL 806 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K + + ++D + + L + + +LGGGG GGRP MAQ+GG K + Sbjct: 807 MS-ENAGKVIICAMASKDAVKNGAHCGKLIKEVSAILGGGG-GGRPDMAQAGGKLPEKIN 864 Query: 887 QAIAGVASFLK 897 AI ++ Sbjct: 865 DAIEESYKIVE 875 >gi|58696697|ref|ZP_00372246.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila simulans] gi|58537122|gb|EAL60234.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila simulans] Length = 845 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 380/867 (43%), Positives = 532/867 (61%), Gaps = 54/867 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GMV FKNIFTG +K + + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMVQFKNIFTGAQKTEMKRAVSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156 SFG YFKE AI+ AW+ +TKE LD+ RL ITVY D+EA+++W+KISG S+DKIIRITT Sbjct: 61 SFGDYFKETAIEFAWEFITKELSLDKNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITT 120 Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216 +DNFWSM TGPCGPCSEIF+D G + +EG+R +EIWNLVFM+F + + Sbjct: 121 DDNFWSMGNTGPCGPCSEIFYDHG-------SPNLQEGDRIVEIWNLVFMEFNKDEEGNL 173 Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276 LPK IDTGMGLER+A V+Q +NYDIDLF LI S++ G N + H++I Sbjct: 174 HKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCGRT---ENKIAHKIIA 230 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE---- 332 DHLR+++FLIA+G+LP NEGR YVLRR++RRA Y LLGY + L+ + P L Sbjct: 231 DHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSA 290 Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391 MG YPELI+AK LIE TL+SE+E F TL +G+ LL+ + L + L G+ AFKLY Sbjct: 291 YMGDIYPELIRAKSLIETTLKSEEENFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLY 350 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G PLDI DIL + D F+ A+ EQ+ RARA G G + E++WF L +K Sbjct: 351 DTYGFPLDITLDILKEK-KINFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDK 409 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQK 510 +G T+F+GY+ + + AIV + E+++ A G+K Sbjct: 410 FGKTKFVGYE----------------------FNEVNDAKILAIVSSKNEVIDSAKEGEK 447 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 + ++ D+TPFY E+GGQ+GDTG I + I + K +++H IV+ G + + Sbjct: 448 ITIILDKTPFYGESGGQVGDTGSLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNT 507 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +ID + R+ L NHSATHLLH L ILG HV+Q GS + PD LRFD +H+ +T Sbjct: 508 VAASIDKERRQTLRRNHSATHLLHFVLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQD 567 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 +L +ED VN +I +NL T+I + AI GA AL G KY ++VRVV + S Sbjct: 568 QLFLVEDMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYGNQVRVVKIGD------S 621 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGGTHV TGEI L IV+ESS+ G+RRIEA+TGQ A +++ + LK +A F+K Sbjct: 622 RELCGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVK 681 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 ++ R+ + +E ++ + K ++ E + +I +NF+SH + + + + Sbjct: 682 APVSEIINRLNILNQERKESEAKIKNLYKKLISAESIKSTEINGINFVSHAFTNIPANII 741 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 + + LQ++ II K+ K ++I V++DL ++ +A +L ++ + G Sbjct: 742 REFV--LQQQKPKTIIAFTATEKD-KTVLIIKVSKDLANKISAKELVSIAVE----KNCG 794 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G +AQ G + NK D AI + S + Sbjct: 795 GNAELAQ-TGSDSNKIDDAITAICSKI 820 >gi|296170783|ref|ZP_06852355.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894598|gb|EFG74335.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 901 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 324/933 (34%), Positives = 482/933 (51%), Gaps = 74/933 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F GH +PS+S+I +DP L+F N+GMV F F G P Y Sbjct: 1 MQTHEIRKRFLDHFVTAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTNGVSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R++ TVY +D+EA +LW++I+GL A++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPDRIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMG 229 +D+GE GG P ++E+ RYIEIWNLVFMQ E+ + LP+ +IDTGMG Sbjct: 176 YDRGEEFGVGGGPIANED--RYIEIWNLVFMQNERGEGTGKTDFEILGPLPRKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286 +ER+A +LQ N Y+ DL + +I Y ++ V +RVI DH R+++ LI Sbjct: 234 VERVAFILQGVHNVYETDLLRPVIDLVAARAPRGYDAGRHDDDVRYRVIADHSRTAAILI 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P N+GRGYVLRR++RR + A+LL P++ L+ + MG +YPEL+ Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVADFGR 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F +TL G L D V + + ++G+ AF L+DT+G P+++ ++ Sbjct: 354 IRRIAVAEETAFNRTLVAGSKLFDEVAGTTKAAGAKAISGNDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D I F + + EQR RA+A + + + G T+F G+D L Sbjct: 414 AAEAGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELS 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG--------QKVEVVFD 516 + + I G+ V G +VE+V D Sbjct: 473 S-----------------------EAKILGIFVDGKRVPVVTHGAHPDGAGAHQVELVLD 509 Query: 517 QTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +TP YAE+GGQ+ D G G+ R +TDVQK A+ ++VH VE G ++V Sbjct: 510 RTPLYAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVV 569 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D + RR + HS TH++H AL +LG + Q GS P LRFD P++ + Sbjct: 570 AAVDPEWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLSEEQR 629 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +E+ N + + V T E A A GA A+ G Y D VRVV + GG S Sbjct: 630 TQVEEVTNQAVQADFEVHTFTEQLEKAKAMGAMAMFGEAYPDEVRVVEI----GGPFSLE 685 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTHV ++ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV Sbjct: 686 LCGGTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745 Query: 753 QGNVVGRVEEIWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806 V RV + E + + A + +I +V ++ +S + + Sbjct: 746 SDEVPARVAGLVERLKAAEKELERARLAGARAAAANAAAGAERIGNVRVVAQRMSAGMTA 805 Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863 +L+S+ ++ K+ S ++ L+ + + + A DL + A V Sbjct: 806 GDLRSLAGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQELGIRANDLIKQLA-VT 864 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P +AQ G + ++ D A+A V S + Sbjct: 865 VDGRGGGKPDLAQGSGKDPSRIDAALAAVRSEI 897 >gi|116494328|ref|YP_806062.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334] gi|122264244|sp|Q03B02|SYA_LACC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116104478|gb|ABJ69620.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334] Length = 881 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 316/917 (34%), Positives = 484/917 (52%), Gaps = 61/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 4 MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K F Sbjct: 64 TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +RLY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF+D+ Sbjct: 120 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175 Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ E RY+EIWN+VF + P +IDTGMGLER+ Sbjct: 176 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q ++ DLF +I+A+E+++ K + V+ ++I DH R+ +F I DG L Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE+ RF +TLD G+ LL+ +++ L +D + G AFKL+DT+G P+++ + G Sbjct: 356 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 415 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + + QR RAR S ++ L ++F G+ L Sbjct: 416 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 470 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++ IV ++ + G +++FD+TPFYAE GGQ+ Sbjct: 471 --------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 509 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + A H + +G L T L++D R+++S+NH+ Sbjct: 510 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLETGQQYWLSVDPLRRKKVSLNHT 569 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I LP Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 629 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M E+A GA A+ G KY VR+V + G +++ GGTH +++ + L Sbjct: 630 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSNALGLF 684 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV +V ++ + Sbjct: 685 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 744 Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q A + +L + + ++ + ++ + EL+ + D + K S Sbjct: 745 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I++L G KA++L+ V + F A DL + A +GGGG GGRP MAQ+GG N Sbjct: 805 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 862 Query: 882 GNKADQAIAGVASFLKK 898 A++ + + + Sbjct: 863 PAGIPAALSEAKTVISQ 879 >gi|312870442|ref|ZP_07730562.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3] gi|311093999|gb|EFQ52323.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3] Length = 886 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 309/915 (33%), Positives = 482/915 (52%), Gaps = 63/915 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FFQ++GH+++PS SL+P NDPTL++ NSG+ K F G+ P +T+ Sbjct: 9 SAQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMTS 68 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT F D Sbjct: 69 SQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGFD 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLYIT Y +D +A+ W++ G++ D + I DNFW + + GP GP +E+F+D+G+ Sbjct: 125 PARLYITYYPKDHDAYNKWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEVFYDRGQ 180 Query: 182 CI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E ERY+EIWN+VF QF + LP +IDTGMGLER+ ++ Sbjct: 181 EFNNLAEDDPESYPGGENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVSI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPA 293 + N++ DLF +I+ ++ K + V ++I DH+R+ +F I DG LP+ Sbjct: 241 FENAPTNFETDLFMPIIKQVAALSAGKQYGADKADDVQFKIIADHIRTITFAIGDGALPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GRGYV+RR++RRA+ + LG EP + L+P + M YPE++Q I ++S Sbjct: 301 NMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIKS 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF TL+ GL LL+ V++ ++G AFKLYDT+G P+++ ++ GL Sbjct: 361 EEDRFSATLNGGLNLLNSVIADAKQNCSNQIDGRTAFKLYDTYGFPIELTKEYAADEGLT 420 Query: 412 GIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F A+ EQ++RA A + G G +W KE ++++GY L Sbjct: 421 -VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGYTDLTVDG--- 473 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEVVFDQTPFYAEAGGQLG 529 + V + G+ + A S Q +EV+FD TPFYAE GGQ+ Sbjct: 474 -------------------AKVIGLAHDGQQADSAAPSDQNIEVIFDTTPFYAEMGGQVA 514 Query: 530 DTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG I + + + A H + ++ L +D ++ NH+ Sbjct: 515 DTGDIIDNYGEKVGRVVDVQHAPNQQNLHRVELTSPIKKGARYKLVVDRARHLKIEKNHT 574 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + LRFD H +T+ +L ++E VN+ I + +P Sbjct: 575 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAMVNEQIFKEIP 634 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A GA AL KY D+VRVV + G +++ CGG HV +T E+ L Sbjct: 635 VTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNELGLF 689 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767 IVSE + AG+RRIEA+T A L ++ L+ +A LK V +V + EE Sbjct: 690 KIVSEGGVGAGVRRIEAVTSSDAYDFLQKRNAMLEEVAGDLKAAQIKEVPHQVANLQEEL 749 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ + ++ + + + ++ + +L+ + D+ + K S Sbjct: 750 KQANKQVEALQAKIAAQQANNVFDDVQETKKGKLIAAEVKVAGMGQLRQLADSWRAKGLS 809 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L G + + KA++L+ V++ + A DL + A + GG GGGRP++AQ+GG + Sbjct: 810 DVLVL-GTANDGKANLLVAVSDGKVKAGLKAGDLIKAIASAIKGG-GGGRPNLAQAGGKD 867 Query: 882 GNKADQAIAGVASFL 896 A+ +L Sbjct: 868 PAGIPAALKLAKEYL 882 >gi|78214024|ref|YP_382803.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605] gi|123577380|sp|Q3AGN4|SYA_SYNSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78198483|gb|ABB36248.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605] Length = 889 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 326/907 (35%), Positives = 492/907 (54%), Gaps = 53/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F+ + GH+ + S+SLIP +DPT++ T +GM+PFK +F GQ++ T Sbjct: 16 SGEEIREAFLNFYAERGHKRMASASLIP-DDPTVLLTIAGMLPFKPVFLGQQERPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+RAI+ AW+L T + +D Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQRAIEWAWELSTGVYGIDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KNLVVSVFREDDEAELIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 191 L-GDEDIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ + G+ Y N + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADLAGVDYHQLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + A+P +I+ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ ++G AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 370 ETLERGEKLLAEVLASKPTQ--ISGAQAFELYDTYGFPLELTQEIAEEQGL-AVDLDGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQR RA+A ++ + + I + ++ AT F GY+ L + Sbjct: 427 AAMEEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFEGYEALDHA------------- 472 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+V G A +G V+VV D TPFY E GGQ+GD G G Sbjct: 473 ----------SCVQALVVNGGPSTTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLAGSD- 521 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + ++ +FVH VERG L ++ +D RR+ NH+ATHLL AL Sbjct: 522 LIVRIESVSRSRDVFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQ 581 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD +T +L+ +E +N I + + + M + A Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHCPTAVTPDQLQQVETLINGWINEAHALQVQEMAIDQA 641 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D V D S LCGGTHV++T EI L IV+ES + AG Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVTNTAEIGLFKIVAESGVAAG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IH 774 IRRIEA+ G ++L +D +K L K +V RV + EE + Sbjct: 697 IRRIEAVAGPAVLAYLNERDVVVKQLGDRFKAQPAEIVDRVAALQEELKATGKALAAAQA 756 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 + + D + + VD L+ +L ++ G +++G + Sbjct: 757 ELAVAKAGALAAKAEAVGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDP 816 Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++ + ++ + A AK GGGG GGRP++AQ+GG +G A+ Sbjct: 817 GDMGKVILVAAFGQQVIAAKLQAGKFIGGIAKQCGGGG-GGRPNLAQAGGRDGAALPGAL 875 Query: 890 AGVASFL 896 + L Sbjct: 876 DAAQAEL 882 >gi|33239500|ref|NP_874442.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81665176|sp|Q7VEG5|SYA_PROMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33237025|gb|AAP99094.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 892 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 330/915 (36%), Positives = 506/915 (55%), Gaps = 58/915 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ IR FL F+ + GHE++PS+SL+P NDPT++ T +GM+PFK +F G + Sbjct: 12 MKSLTGEEIRAAFLNFYAERGHEIVPSASLVP-NDPTVLLTIAGMLPFKPVFLGHQDRPS 70 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VT+ QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L F Sbjct: 71 ARVTSCQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSINVF 126 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L+ + I+++ ED+EA ++W+ + G++ +IIR+ DNFWS TGPCGPCSE+++D Sbjct: 127 GLNPSHIVISIFREDDEAEQIWRDVIGVNPRRIIRMDEKDNFWSSGPTGPCGPCSELYYD 186 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ Sbjct: 187 FHPEL-GEEEIDLEDDTRFIEFYNLVFMQYNRNSSGTLTSLANCNIDTGMGLERMAQILQ 245 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANE 295 NNY+ DL L++ + ++YE N + +VI DH R+ LI DG+ +N Sbjct: 246 GVANNYETDLIYPLLEKIASLIDVQYEDLNATIKASFKVIGDHTRACVHLIGDGVSASNL 305 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RR + + RL+G T+P ++ + M SAYP+L++ + LI + L+ E+ Sbjct: 306 GRGYVLRRLLRRVVRHGRLIGITKPFLVQIAEVAIELMQSAYPQLLERRQLIFKELQREE 365 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 RF +TL++G LL +LS ++ G+ AF+LYDT+G P+++ ++I +D+ Sbjct: 366 TRFLETLEKGEKLLAELLSKA--PSVITGEAAFELYDTYGFPVELTEEIAEE-NDLRVDM 422 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A++EQR RA++ ++ + + I + E G T F+GY L Sbjct: 423 KGFKKAMDEQRRRAKSAAMTIDLTLQDTIDKVVSE-VGETNFLGYQQLEQ---------- 471 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V+AIV G +E G K+++V + TPFY E GGQ+GD G Sbjct: 472 -------------FSQVQAIVVNGVSSQECNVGDKIDIVLNMTPFYGEGGGQIGDRGIIS 518 Query: 536 GDGIRLQIT----DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 D ++ +G FVH +V+ G+L ++ T+D +RR NH+ATH Sbjct: 519 SASSDDSECLIEIDSVRRVKGAFVHSGLVKNGVLTLGDNVQCTVDSFSRRCAQANHTATH 578 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL + S ++Q GS + D LRFD +P++ AEL+ IE +N I++ +V Sbjct: 579 LLQAALKKAVDSDITQAGSLVDFDRLRFDFHFVRPVSGAELEHIEKLINGWISEAHSLVI 638 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ +A GA A+ G KY + V D S LCGGTHV++T EI L IV Sbjct: 639 SEMSINEAKRVGAIAMFGEKYGEVV-----RVVDVPGVSKELCGGTHVTNTAEIGLFKIV 693 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ I AGIRRIEAI GQ +L +D +K L+ K +V RV + +E + L Sbjct: 694 SETGIAAGIRRIEAIAGQGVLDYLNDRDGVVKILSERFKAQSNEIVDRVIALQDEVKSLT 753 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNF-----MSHIISEVDSKELKSVMDALQKKIQ-SGII 825 + K + ++ K V+ + + V ++SV+ L ++ + + Sbjct: 754 KLLVKAQDEVAFTKALSLKNKVVSLTNSQYLIERLDGVTGDAIQSVVKTLVDELGDNAAV 813 Query: 826 MLVG---ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +L G ++ +KK ++ +++ +A A++ GGGG GGRP+ AQ+GG + Sbjct: 814 VLAGMPDLNDQKKVILVAAFGSEIIAQGLHAGQFLGPIAEICGGGG-GGRPNFAQAGGRD 872 Query: 882 GNKADQAIAGVASFL 896 K D A+ + Sbjct: 873 PTKLDDALDLAKERI 887 >gi|255327164|ref|ZP_05368239.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296] gi|255295782|gb|EET75124.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296] Length = 895 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 325/927 (35%), Positives = 497/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH ++PS+SLI N+P MFT +GMVPF F G+E P + Sbjct: 1 MLSQEISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT Sbjct: 60 TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++T+Y+ D+EAF +W G A++I R+ +N+WS + GP GP SEIF Sbjct: 116 GFGLDPERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + + +RYIEIWNLVFMQ+++ + + LPK +IDTG+G+ Sbjct: 176 YDRGPAY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + ++ A+ +++G KY + V RV+ DH+RS Sbjct: 235 ERLAMLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 S LIADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVA 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399 I +E++ F T++ G L+ + + ++G AF L+DT+G P+D Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPID 414 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D +F + + EQR RA+A + + + F G Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTG 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y LR + ++AI+ G V A +G K+EVV D+TP Sbjct: 474 YTELR-----------------------TETKLRAILVDGVSVPAAKAGDKIEVVLDETP 510 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAEAGGQ DTG G+G + + DVQ+ +G+ VH A+V G + T +V +D Q Sbjct: 511 FYAEAGGQAADTGVITGNGFIIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQR 570 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR HS TH++H AL +LG+ +Q GS LRFD + ++ + + +E+ Sbjct: 571 RRDGEKAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWGEGLSESAKREVEEVA 630 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I N V+TR M +A A GA +L G KY D VRVV + GG S LCGGTHV Sbjct: 631 NLAIRDNHEVITREMPIAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHV 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758 S+ EI L +++ESS+ +G RR+EA+ G + +HL + + L +KV ++ Sbjct: 687 GSSAEIGSLSLLTESSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPE 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813 ++ + + + + A+ + + + + I V ++H E+D+ ++ + Sbjct: 747 KINQTLAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLA 806 Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 L+ + S ++ V + VL+ E + A L R++A VLGGGG GG+ Sbjct: 807 LDLRSRFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG + +K A+ V + + Sbjct: 866 DDVAQGGGQDASKIGAALDAVRDAIAQ 892 >gi|283458020|ref|YP_003362628.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18] gi|283134043|dbj|BAI64808.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18] Length = 895 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 325/927 (35%), Positives = 497/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH ++PS+SLI N+P MFT +GMVPF F G+E P + Sbjct: 1 MLSQEISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT Sbjct: 60 TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++T+Y+ D+EAF +W G A++I R+ +N+WS + GP GP SEIF Sbjct: 116 GFGLDPERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + + +RYIEIWNLVFMQ+++ + + LPK +IDTG+G+ Sbjct: 176 YDRGPAY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + ++ A+ +++G KY + V RV+ DH+RS Sbjct: 235 ERLAMLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 S LIADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVA 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399 I +E++ F T++ G L+ + + ++G AF L+DT+G P+D Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPID 414 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D +F + + EQR RA+A + + + F G Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTG 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y LR + ++AI+ G V A +G K+EVV D+TP Sbjct: 474 YTELR-----------------------TETKLRAILVDGVSVPAAKAGDKIEVVLDETP 510 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAEAGGQ DTG G+G + + DVQ+ +G+ VH A+V G + T +V +D Q Sbjct: 511 FYAEAGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQR 570 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR HS TH++H AL +LG+ +Q GS LRFD S+ ++ + + +E+ Sbjct: 571 RRDGEKAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWSEGLSESAKREVEEVA 630 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I N V+TR M +A A GA +L G KY D VRVV + GG S LCGGTHV Sbjct: 631 NLAIRDNHEVITREMPLAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHV 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758 S+ EI L +++E S+ +G RR+EA+ G + +HL + + L +KV ++ Sbjct: 687 GSSAEIGSLTLLTEGSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPE 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813 ++ + + + + A+ + + + + I V ++H E+D+ ++ + Sbjct: 747 KINQTLAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLA 806 Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 L+ + S ++ V + VL+ E + A L R++A VLGGGG GG+ Sbjct: 807 LDLRSRFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG + +K A+ V + + Sbjct: 866 DDVAQGGGQDASKIGAALDAVRDAIAQ 892 >gi|312870710|ref|ZP_07730817.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] gi|311093722|gb|EFQ52059.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] Length = 877 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S ++ I +L + F Y L+ Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N +A+ V + L Sbjct: 861 KNPAGLAKALETVLNEL 877 >gi|297564703|ref|YP_003683675.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946] gi|296849152|gb|ADH62167.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946] Length = 894 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 328/892 (36%), Positives = 493/892 (55%), Gaps = 66/892 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57 + IR +L+FFQ GH LPS S+IP +DP+L+F N+GM P K F G+ P Sbjct: 3 MTTAEIREKYLQFFQSKGHLRLPSFSVIPQDDPSLLFINAGMTPLKPYFLGKTPIFHTPE 62 Query: 58 YQ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + VTT QKCVR G D++NVGRTNRH T FEMLGNFSFG YFK+ AI AW+ Sbjct: 63 GEKISYRVTTCQKCVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAILWAWEF 118 Query: 114 LTK--EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAET 166 LT L+ R+Y+T+Y+ED+EAF+ W + GL +++ R ++NFW S Sbjct: 119 LTDKRWLGLEPERIYVTIYEEDDEAFEYWTQDVGLPPERLHRFGADENFWPADAPSKGPN 178 Query: 167 GPCGPCSEIFFDQGECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 GPCGPCSEI++D+G + E R++EIWNLVF Q+++++ LPK + Sbjct: 179 GPCGPCSEIYYDRGPEFGADTWADYYQTRESNRFVEIWNLVFPQYDRKDGGILEPLPKPN 238 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283 IDTGMGL R+A VLQ T+ Y+ D FK +I +++G+ YEG + + HRVI +H R+ S Sbjct: 239 IDTGMGLARVAMVLQGVTDFYETDEFKPIIAKVVELSGVSYEGPSSLAHRVISEHARAVS 298 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F+++DG +N GRGYV+RR++RRA+ Y LLG EP M L + MG YPEL + Sbjct: 299 FILSDGATFSNTGRGYVVRRLLRRAVRYGYLLGLREPFMHRLAAVVAEVMGGVYPELREN 358 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 +++ +R E+ERF +TL++G+ LD +LS L + L+G+ AF+LYDT+G PLD+ + Sbjct: 359 LESVQKQIRLEEERFFETLEQGVERLDALLSGLEPGDTLSGEEAFRLYDTYGFPLDLTLE 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYD 461 I RG+ +D F +ALEE + AR + + ++ G T F+GY+ Sbjct: 419 IADERGIK-VDTEGFQKALEEAQELARQRAAFDKDVFKRPNEALLAIARDSGGTVFVGYE 477 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 ++ VK ++ + ++EA +G +V+VV D+TPFY Sbjct: 478 RTE-----------------------ETAQVKLLLAGNQSLDEAPAGTEVQVVLDRTPFY 514 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE GGQ+GD G G +++ QK +GI++H A VE G L+ ++ +D R Sbjct: 515 AEGGGQIGDFGVLEWAGGWAKVSTTQKNPDGIYLHLAKVEEGTLKAGTTVRALVDPHRR- 573 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 NH+ATHLLH AL ILG+HV Q GS + PD LRFD TH +P++ EL IE VN Sbjct: 574 DTEKNHTATHLLHAALRAILGTHVRQAGSYVGPDRLRFDFTHPEPVSPRELARIELLVNR 633 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGG 696 I + PV E+A GA AL G KY D VRVV+VE V S LCGG Sbjct: 634 WIQGDFPVSYTYKPLEEAKKEGAMALFGEKYADVVRVVAVEGTADNVAAGTAISKELCGG 693 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 HV TGEI + I E ++ +G+RRIEA+TG A ++ + L++L+ L V+ + Sbjct: 694 CHVRRTGEIGMFVIRFEEAVSSGVRRIEALTGTGAVQYVRENLDVLQALSRELGVNPEGL 753 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELK 810 R+ ++ E + + + + +L L + + +++ + ++ L+ Sbjct: 754 PERLGKLQNEIKAREKEIERLRRELARAQLGGGTASALKEAGGYQYLAVRLEGLEVGALR 813 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAK 861 S D L K ++ ++ + ++I ++++ +A + + + Sbjct: 814 SAADELLDKHKADLVAVGSGQN-----LVIKLSKEAQAKGLDAGAVMKRLTE 860 >gi|72383213|ref|YP_292568.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A] gi|123620600|sp|Q46I13|SYA_PROMT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|72003063|gb|AAZ58865.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A] Length = 886 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 333/909 (36%), Positives = 503/909 (55%), Gaps = 53/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++ T Sbjct: 15 SGDEIRDAFINFFVQHNHKKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRAT 73 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ Sbjct: 74 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNP 129 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + + I+V+ ED EA ++WK++ G+ A++IIR+ DNFWS TGPCGPCSE++FD Sbjct: 130 QNIVISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPE 189 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + K L IDTGMGLERMA +LQ+K+N Sbjct: 190 L-GSDEIDLEDDSRFIEFYNLVFMQYNRDLKGNLEPLANCHIDTGMGLERMAQILQKKSN 248 Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI A+ + +KY N + ++I DH R+ + LI DG+ +N GRGY Sbjct: 249 NYETDLIFPLINAAALLAQIKYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RL+G +P + L M +AYP+L++ K +I L+ E+ RF Sbjct: 309 ILRRLIRRMIRHGRLVGIIQPFLPQLAEIAIELMKNAYPQLLEKKKIILNELKIEESRFL 368 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL + SH + ++++G AF+LYDT+G PL++ ++I +G +DI F Sbjct: 369 ETLERGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKG-ISVDINGFE 425 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +QR RA+ S+ + I + + T+F GY+ L Sbjct: 426 NEMAKQRKRAKEASVSIDLTEEGSIEREIS-LFDDTRFEGYEKLE--------------- 469 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +S V I + E V++AV G V+++ ++TPFYAE+GGQ+GD G + Sbjct: 470 --------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGLITSQDL 521 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + +K + IF+H IV G+L S+ + + R++ + NH+ATHLL AL Sbjct: 522 EV-SVENVRKKKNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKL 580 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 + S VSQ GS ++ LRFD KP+T EL+ +E +N I ++ + + M ++A Sbjct: 581 SIDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEARINQWINEDHLIQIKTMPIKEA 640 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 +A+GA A+ G KY D VRVV V S LCGGTHV+ T ++ I++E+ I +G Sbjct: 641 MAAGALAMFGEKYGDVVRVVDVPG-----ISMELCGGTHVTRTSQLGTFKIINETGIASG 695 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEAI G + +D +K L+ KV +V RV + E + K K Sbjct: 696 IRRIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKN 755 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830 +L + + + + VD L+S +L + ++ G Sbjct: 756 ELALAKALGLATYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQ 815 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + DL+ D +A AK+ GGGG GGRP++AQ+GG D A+ Sbjct: 816 EIDNKLVFVAAFSPDLVSDGLHAGKFISGVAKMCGGGG-GGRPNLAQAGGSQPQSLDLAL 874 Query: 890 AGVASFLKK 898 L + Sbjct: 875 EKANENLTQ 883 >gi|315653055|ref|ZP_07905983.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195] gi|315489590|gb|EFU79224.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195] Length = 906 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 327/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 30 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 89 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 90 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 145 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 146 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 202 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 203 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 262 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 263 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 322 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 323 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 382 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 383 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 442 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S ++ I +L + F Y L+ Sbjct: 443 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 498 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 499 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 535 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 536 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 595 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 596 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 655 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 656 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 710 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 711 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 770 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 771 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 831 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 889 Query: 880 PNGNKADQAIAGVASFL 896 N QA+ V + L Sbjct: 890 KNPAGLAQALETVLNEL 906 >gi|259501304|ref|ZP_05744206.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335] gi|259167274|gb|EEW51769.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335] Length = 906 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 498/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 30 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 89 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 90 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 145 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 146 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 202 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 203 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 262 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 263 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 322 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 323 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 382 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 383 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 442 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ + Q+ RAR L S ++ I +L + F Y L+ Sbjct: 443 DAGL-AVDKEEFDAEMRAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 498 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 499 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 535 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 536 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 595 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 596 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 655 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 656 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 710 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 711 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 770 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 771 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 831 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 889 Query: 880 PNGNKADQAIAGVASFL 896 N +A+ V + L Sbjct: 890 KNPAGLAKALETVLNEL 906 >gi|227534477|ref|ZP_03964526.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187876|gb|EEI67943.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 914 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 315/917 (34%), Positives = 483/917 (52%), Gaps = 61/917 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 37 MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 96 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K F Sbjct: 97 TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 152 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +RLY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF+D+ Sbjct: 153 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 208 Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ E RY+EIWN+VF + P +IDTGMGLER+ Sbjct: 209 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 268 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q ++ DLF +I+A+E+++ K + V+ ++I DH R+ +F I DG L Sbjct: 269 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 328 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + Sbjct: 329 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 388 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE+ RF +TLD G+ LL+ +++ L +D + G AFKL+DT+G P+++ + G Sbjct: 389 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 448 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + + QR RAR S ++ L ++F G+ L Sbjct: 449 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 503 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++ IV ++ + G +++FD+TPFYAE GGQ+ Sbjct: 504 --------------------ASLQIIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 542 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + A H + +G L L++D R+++S+NH+ Sbjct: 543 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLERGQQYWLSVDPLRRKKVSLNHT 602 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I LP Sbjct: 603 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 662 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M E+A GA A+ G KY VR+V + G +++ GGTH +++ + L Sbjct: 663 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSNALGLF 717 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV +V ++ + Sbjct: 718 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 777 Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q A + +L + + ++ + ++ + EL+ + D + K S Sbjct: 778 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 837 Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I++L G KA++L+ V + F A DL + A +GGGG GGRP MAQ+GG N Sbjct: 838 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 895 Query: 882 GNKADQAIAGVASFLKK 898 A++ + + + Sbjct: 896 PAGIPAALSEAKTVISQ 912 >gi|145295754|ref|YP_001138575.1| alanyl-tRNA synthetase [Corynebacterium glutamicum R] gi|205830038|sp|A4QEK7|SYA_CORGB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|140845674|dbj|BAF54673.1| hypothetical protein [Corynebacterium glutamicum R] Length = 888 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 327/921 (35%), Positives = 491/921 (53%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F F GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ Sbjct: 1 MQTHEIRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVA 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSE Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+GE G G + RY+EIWNLVFM+ E+ N + LPK +IDTGM Sbjct: 176 IYYDRGEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFEILGDLPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G+ER+A +LQ+ N Y+ DL + +I +E +TG KY +N + RVI DH R+ LI Sbjct: 235 GVERVACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F KTL G L + + + G AF L+DT+G P+D+ ++ Sbjct: 355 IMRVAVTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D+ F+ + EQRSRA+A S G T+ + T F G++ L Sbjct: 415 AAEAGLE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELD 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V ++ G + EA GQ+VEV+ DQ+P YAE+ Sbjct: 474 S-----------------------QSKVLGLLSDGAKISEATEGQEVEVILDQSPLYAES 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQLGD G + L + DVQK + ++VH A+V G L +V ++D Q R Sbjct: 511 GGQLGDRGQILLGDTVLDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATHL+H AL +LG Q GS P LRFD +++ +T A+++ I+ N+ + Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E+A A GA AL G Y VRVV + GG S LCGGTHV+ + + Sbjct: 631 TDWAVNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + ++ ESSI +G+RRIEA +G + ++L + + LAS LK + RV ++ Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLV 746 Query: 765 EEYRKLQLIHAKR-KLQLNVEDL----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 ++ + + + QL + + +I V + + ++ +L+++ L+ Sbjct: 747 DKLKAAEKEIEALHRQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKD 806 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 K+ G++++ + K V+ + ++ +L +L + G GGG+ +AQ Sbjct: 807 KLGDREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQ 865 Query: 877 SGGPNGNKADQAIAGVASFLK 897 G N + A V + ++ Sbjct: 866 GSGANIAGLESAFGAVRAEIE 886 >gi|227529700|ref|ZP_03959749.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540] gi|227350366|gb|EEJ40657.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540] Length = 884 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 319/917 (34%), Positives = 504/917 (54%), Gaps = 63/917 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLKFFEEHGHKIMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W++ G++ D +I DNFW + + GP GP +EIF+D+G Sbjct: 124 DPERLYITYYPKDHDAYNKWRE-VGVAKDHLIP--DEDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + E RY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 180 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILP 292 + + N++ DLF LI+ +E+ +G K + + ++I DH+R+ +F I DG LP Sbjct: 240 IFENAPTNFETDLFMPLIKQTEKFSGSKKYGESKEDDIQFKIIADHIRTITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I ++ Sbjct: 300 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLENADYIASVIK 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF TL+ GL LL+ V+++ KD ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEDRFSATLNGGLNLLNNVIANAKKDGSNEIDGRTAFKLYDTYGFPIELTKEYASDEGL 419 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR + G G +W K+ A++++GY L Sbjct: 420 T-VDEDGFQAAMTEQQNRARNARDMDNGMGVQTDLWTDFKD---ASRYVGYTDLTVD--- 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528 ++ V + G+ ++A G K +EV+FD TPFYAE GGQ+ Sbjct: 473 -------------------NAKVIGLAHDGKQADDAQPGDKNIEVIFDVTPFYAEMGGQV 513 Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG I + ++ + A H + L+ L +D ++ NH Sbjct: 514 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELNAPLKKGARYKLVVDRIRHLKIEKNH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + LRFD H +T+ +LK++E VN+ I + + Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAKDLKAVEKMVNEQIWKEI 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A GA AL KY D+VRVV + G +++ CGG HV +T E+ L Sbjct: 634 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNELGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 IVSE + AG+RRIEA+T A + L +D+ L +A+ LKV V +VE + + Sbjct: 689 FKIVSEGGVGAGVRRIEAVTSSDAFNFLQDRDDLLNKVATDLKVAQIKEVPHQVEALQSD 748 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++ Q A + ++ + + K A+ + ++ + +L+ + D+ + K Sbjct: 749 LKEAQKQSAALQAKIAAQQANNVFENVQKTANGSLIAAEVQVAGMGQLRQLADSWRAKSL 808 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L G + + KA++L+ V++D + A DL ++ A + GG GGGRP++AQ+GG Sbjct: 809 SDVLVL-GTANDGKANLLVAVSDDKVKDGLRAGDLIKVIAPAINGG-GGGRPNLAQAGGK 866 Query: 881 NGNKADQAIAGVASFLK 897 A+ A +L Sbjct: 867 KPEGIQDALKQAADYLN 883 >gi|309805316|ref|ZP_07699367.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] gi|308165392|gb|EFO67624.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] Length = 877 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDIDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S ++ I +L + F Y L+ Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N +A+ V + L Sbjct: 861 KNPAGLAKALETVLNEL 877 >gi|259502864|ref|ZP_05745766.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041] gi|259169231|gb|EEW53726.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041] Length = 886 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 307/916 (33%), Positives = 483/916 (52%), Gaps = 63/916 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FFQ++GH+++PS SL+P NDPTL++ NSG+ K F G+ P +T+ Sbjct: 9 SAQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMTS 68 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ I AW+LLT F D Sbjct: 69 SQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKDEVIPWAWELLTSDDWFGFD 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLYIT Y +D +A+ W++ G++ D + I DNFW + + GP GP +E+F+D+G+ Sbjct: 125 PARLYITYYPKDHDAYNKWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEVFYDRGQ 180 Query: 182 CIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E RY+EIWN+VF QF + LP +IDTGMGLER+ ++ Sbjct: 181 EFNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVSI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPA 293 + N++ DLF +I+ ++ K + V ++I DH+R+ +F I DG LP+ Sbjct: 241 FENAPTNFETDLFMPIIKQVAALSAGKEYGANKADDVQFKIIADHIRTITFAIGDGALPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GRGYV+RR++RRA+ + LG EP + L+P + M YPE++Q I ++S Sbjct: 301 NMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIKS 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF TL+ GL LL+ V++ ++ ++G AFKLYDT+G P+++ ++ GL Sbjct: 361 EEDRFSATLNGGLNLLNSVIADAKQNGSNQIDGRTAFKLYDTYGFPIELTKEYAADEGLT 420 Query: 412 GIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F A+ EQ++RA A + G G +W KE ++++GY L Sbjct: 421 -VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGYTDLVVDD--- 473 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEVVFDQTPFYAEAGGQLG 529 + V + G+ + A Q +EV+FD+TPFYAE GGQ+ Sbjct: 474 -------------------AKVIGLAHDGQQADSAAPDDQNIEVIFDKTPFYAEMGGQVA 514 Query: 530 DTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG I + ++ + A H + L+ L +D ++ NH+ Sbjct: 515 DTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPLKKGARYKLVVDRARHLKIEKNHT 574 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + LRFD H +T+ +L ++E VN+ I + +P Sbjct: 575 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAMVNEQIFKEIP 634 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A GA AL KY D+VRVV + G +++ CGG HV +T E+ L Sbjct: 635 VTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNELGLF 689 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767 IVSE + AG+RRIEA+T A L ++ L+ +A LK V +V + EE Sbjct: 690 KIVSEGGVGAGVRRIEAVTSSDAYDFLQQRNAMLEEVAGDLKAAQIKEVPHQVANLQEEL 749 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ + ++ + ++ + +L+ + D + K S Sbjct: 750 KQANKQVEALQAKIAAQQANSVFDEVQTTKGGTLIAAEVKVAGMGQLRQLADRWRAKGLS 809 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L G + + KA++L+ V+++ + A DL + A + GG GG RP++AQ+GG + Sbjct: 810 DVLVL-GTANDGKANLLVAVSDEKVKAGLKAGDLIKAIASAIKGG-GGSRPNLAQAGGKD 867 Query: 882 GNKADQAIAGVASFLK 897 A+ +L+ Sbjct: 868 PAGIPAALKLAKEYLE 883 >gi|19552844|ref|NP_600846.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|62390515|ref|YP_225917.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|24418687|sp|Q8NQ22|SYA_CORGL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21324401|dbj|BAB99025.1| Alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|41325852|emb|CAF21641.1| ALANYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032] Length = 888 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 326/921 (35%), Positives = 490/921 (53%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F F GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ Sbjct: 1 MQTHEIRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVA 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD RL++TVY +D+EA ++W+K G+ +++I R+ DN+WSM GPCGPCSE Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWEKKIGVPSERIQRLGMADNYWSMGVPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+GE G G + RY+EIWNLVFM+ E+ N LPK +IDTGM Sbjct: 176 IYYDRGEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFDILGDLPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G+ER+A +LQ+ N Y+ DL + +I +E +TG KY +N + RVI DH R+ LI Sbjct: 235 GVERVACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRER 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F KTL G L + + + G AF L+DT+G P+D+ ++ Sbjct: 355 IMRVAVTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D+ F+ + EQRSRA+A S G T+ + T F G++ L Sbjct: 415 AAEAGLE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELD 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V ++ G + EA GQ+VEV+ DQ+P YAE+ Sbjct: 474 S-----------------------QSKVLGLLSDGAKISEATEGQEVEVILDQSPLYAES 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQLGD G + L + DVQK + ++VH A+V G L +V ++D Q R Sbjct: 511 GGQLGDRGQILLGDTVLDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATHL+H AL +LG Q GS P LRFD +++ +T A+++ I+ N+ + Sbjct: 571 QAHTATHLIHAALRQVLGPTALQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVD 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E+A A GA AL G Y VRVV + GG S LCGGTHV+ + + Sbjct: 631 TDWAVNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + ++ ESSI +G+RRIEA +G + ++L + + LAS LK + RV ++ Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLV 746 Query: 765 EEYRKLQLIHAKR-KLQLNVEDL----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 ++ + + + QL + + +I V + + ++ +L+++ L+ Sbjct: 747 DKLKAAEKEIEALHRQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKD 806 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 K+ G++++ + K V+ + ++ +L +L + G GGG+ +AQ Sbjct: 807 KLGDREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQ 865 Query: 877 SGGPNGNKADQAIAGVASFLK 897 G N + A V + ++ Sbjct: 866 GSGANIAGLESAFGAVRAEIE 886 >gi|258648967|ref|ZP_05736436.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259] gi|260850577|gb|EEX70446.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259] Length = 874 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 333/920 (36%), Positives = 482/920 (52%), Gaps = 75/920 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G +P + Sbjct: 1 MTANEIRESFKRFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGHREPKSRRQ 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI+ A++ L +D Sbjct: 61 TDSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEEAIEFAYEYLVGVLKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LY+TV++ D+EA +W + D II +DNFW M ETGPCGPCS Sbjct: 121 PANLYVTVFEGSPDEGLSRDDEAAAIWGR--HFPEDHIINGNKHDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + IEIWNLVFMQ+ ++ LP+ IDTGMG Sbjct: 179 EIHIDIRSAEEKAAVAGRELINKDHPQVIEIWNLVFMQYNRKADGTLDALPQRVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ V+Q K +NYD D+F+ ++ +++G +Y + RVI DHLR+ SF IA Sbjct: 239 FERLCMVMQGKQSNYDTDVFRPILNKIAELSGRRYGESTETDIAMRVIADHLRAISFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L E M L+P L EMG AYPEL + L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYRLVPTLVEEMGEAYPELAAQRDL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 I ++ E++ F +TL G+ LL+GV+ ++ G+ AF L+DT+G PLD+ + I Sbjct: 359 ITRVMKEEEDSFLRTLATGISLLEGVMKETKDGGSSVVKGEKAFTLFDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D FN ++ Q+ RAR+ + W L E G + F+G+D LR Sbjct: 419 CAENGLK-VDEDGFNVEMQRQKERARSA-----ASVETGDWVILSE--GESHFVGWDTLR 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + RKV +K E+V D TPFYAE Sbjct: 471 QACHILRYRKVQQKKQTY----------------------------YELVIDTTPFYAEM 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD+G ++I D +++ +R + +D RR Sbjct: 503 GGQVGDSGVLRSANETVEIFDTKQENNLSIHL---TKRLPENPAAEFMAEVDEAARRSCE 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLL AL +LG+HV Q GS +TP LRFD++H + +T EL+ +E +N I Sbjct: 560 ANHSATHLLDQALREVLGAHVEQKGSLVTPTYLRFDLSHYQKVTPEELRQVERIINRRIR 619 Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +++P R + E+A GA AL G KY DRVRVV S CGG HV STG Sbjct: 620 EDIPLQDHRDVPIEEAKRMGAIALFGEKYGDRVRVVQF------DKSVEFCGGCHVRSTG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I L IVSESS+ AGIRRIEA+T + A Q + L L + + ++ V Sbjct: 674 RIGLFRIVSESSVAAGIRRIEAVTAEAAEEMCYRQHDTLNDLRALFN-NVKDISVAVHNA 732 Query: 764 WEEYRKLQLIHAK---RKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQ 817 EE +L+ K +++ ++L D+ + +++ E +K + L Sbjct: 733 IEENDELKKEVEKFMQLRVKELGKELMKIAENRGDIKLLKYVVKDEWAPDLIKDLAFQLS 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ + ++G + K + +++++ L+ + NA L R +AK++ GG GGG PH A Sbjct: 793 AQLPENLFCVIGSHQGGKPLLTVMISKQLVESKQLNAGQLVREAAKLIKGG-GGGAPHFA 851 Query: 876 QSGGPNGNKADQAIAGVASF 895 +GG + N A+ V Sbjct: 852 TAGGKDLNGLTAAVDKVVEL 871 >gi|300815902|ref|ZP_07096126.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1] gi|300531831|gb|EFK52893.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1] Length = 784 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPGALASVKGWV 779 >gi|323341496|ref|ZP_08081737.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644] gi|323091107|gb|EFZ33738.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644] Length = 910 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 311/921 (33%), Positives = 493/921 (53%), Gaps = 65/921 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+FF+ GH+++ S+ L+P +DPTL++ NSG+ K F G P Sbjct: 31 MKELSSAQVRQMYLDFFKGKGHDVMKSAPLVPHDDPTLLWINSGVATMKKYFDGTVVPKN 90 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT + Sbjct: 91 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSEE 146 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F +D +LY+TVY +D+ A + W K G+ I DNFW + E GP GP SEIF Sbjct: 147 WFAMDPEKLYVTVYPKDDAARECW-KEVGVEDSHIYE--AEDNFWDIGE-GPSGPDSEIF 202 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E ERY+EIWN+VF +F + LP +IDTGMGLE Sbjct: 203 YDRGQEMNNVSEDDPENYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 262 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV----TGMKYEGNNIVNHRVIVDHLRSSSFLIA 287 R+ +V Q N++ DLF +I + ++ + ++ +VI DH R+ +F I Sbjct: 263 RVVSVFQHAKTNFETDLFMPIIDETAKMAKGDVHYGDDAEKDISFKVIADHARAVTFAIG 322 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP+NEGRGYV+RR++RRA+ + + LG + L+P + M SAYPE+++ I Sbjct: 323 DGALPSNEGRGYVIRRLIRRAVMHGQKLGVEGAFLYKLVPIVGKIMESAYPEVLEQSEYI 382 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 ++ +R+E++RF +TL G+ LL ++S + L G FKLYDT+G PL++ ++I Sbjct: 383 QKVIRNEEDRFNETLKDGVGLLADLISETKAKGETKLAGAGVFKLYDTYGFPLELTKEIA 442 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +GL +D F++ +++Q+ RAR+ S + L + ++++GY+ L Sbjct: 443 ADQGL-DVDKAGFDEEMQKQKERARSARGNAKSMGVQNGL--LTDIKTPSEYVGYEKL-- 497 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 I+K I+ ++V+ G+ +V+FD+TPFYAE G Sbjct: 498 ---------------------AADGILKDIIVDNKLVDVVSEGE-AQVIFDKTPFYAEMG 535 Query: 526 GQLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + ++ + A H + ++ + L ++ + ++ Sbjct: 536 GQVADKGIIKNEDGKVVAEVKDVQHAPNGQNMHTLRVLAEMKKDAKYRLEVNVEFHDKVK 595 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLL AL +LG H Q GS + P+ LRFD T T EL+ +E VN+ I Sbjct: 596 KNHTATHLLDQALRDVLGEHTHQAGSLVEPNYLRFDFTKMGATTPEELEKVEKIVNEKIW 655 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N+PV T + + E A GA AL KY D VRVV G +S CGG HV +T E Sbjct: 656 ANMPVETVVTDIESAKKLGAIALFTEKYGDTVRVVK-----AGNYSMEFCGGNHVENTNE 710 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I L IVSES + AG+RRIEA+T + A +L ++ LK A+ +KV V +V+ + Sbjct: 711 IGLFKIVSESGVGAGVRRIEAVTSKEAFEYLEHRNVLLKETAAEMKVAQIKEVPHKVQGL 770 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ ++L+ + + + + +A ++ + +L+S+ D ++ Sbjct: 771 QEQIKELENKVSALEDKFASQQAKDVFKNVQTVAGKTLIAAAVKVSGMNQLRSLADQWKE 830 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K S +++L S + K S+++ ++D + A DL + A ++GGGG GGRP++AQ+ Sbjct: 831 KSLSDVLVLGSASGD-KVSLIVAASDDAIKSGIKAGDLIKAIAPLVGGGG-GGRPNLAQA 888 Query: 878 GGPNGNKADQAIAGVASFLKK 898 GG +A+ +L + Sbjct: 889 GGKKPEGLPEALKAAEKWLAE 909 >gi|325846721|ref|ZP_08169636.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481479|gb|EGC84520.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 870 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 312/905 (34%), Positives = 501/905 (55%), Gaps = 54/905 (5%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L FF K H +L S SLIP +D +L+ N+GM P K FTG++K T+ Sbjct: 7 NELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRATS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R G D++ VG T RH TFFEMLGNFSFG YFK AI A++ LT+ ++D+ Sbjct: 67 SQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAFEFLTENLEIDKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L+++VY++D+EA+K+W + GLS D+I+R DNFW + E GPCGP SEIF D+G Sbjct: 123 LLWVSVYEKDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVEK 181 Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +++ +R++E+WNLVF QF + +E L +IDTGMGLERMA VLQ K Sbjct: 182 AIDENDNKPGNDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQNK 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID+ +++I+ E+++ KY + ++ RVI DH ++ +F+++DGI P+NE RG Sbjct: 242 DNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEKRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + ++ + Y EL+ K I ++ E+ F Sbjct: 302 YVLRRLIRRAFRHGKLLGIEGEFLSSVIEYVIDSYKDEYDELVDRKDKIISVIKKEEANF 361 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 T+D GL +L+ + L ++ L+G+ AFKLYDT+G PLD+ ++IL L +D Sbjct: 362 QNTIDSGLDILNEYIKDLRENNKDTLDGEDAFKLYDTYGFPLDLTKEILTENNLK-VDTK 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +E QR+ AR + + I +++ T+F+GYD L Sbjct: 421 EFDKQMENQRNLARNARKSDAGWSLDSIN---IDEFDKTEFVGYDDLE------------ 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V + + + E V G K V+ D+T FYAE GGQ+ DTG I Sbjct: 466 -----------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLIIT 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++ +VQKK E I + +++ + +D + R ++ NH+ATHLL A Sbjct: 515 GSAKAKVYNVQKKNEIIIHYVEVIDGDLNL--AKADFIVDKERRLDITRNHTATHLLDQA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L IL V Q GS + + LRFD T+ ++ E++ IE+ +N+ I Q L V IM Sbjct: 573 LRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIEKIENEINEKIRQQLKVKKEIMPY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +++ GA L KY D VRVVS+ +S LCGG HV+++ E+++ I+ ESS Sbjct: 633 KESEKLGAIGLFEDKYKDMVRVVSI-----DDYSIELCGGCHVNNSSEVLMFKILQESSA 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +GIRRIEAITG++ +L + ++ LK + N++ + E + EE + L+ K Sbjct: 688 ASGIRRIEAITGRKVYEYLNSNLGLINVVSKALKTNPKNILLKAESLNEEIKNLKSDIQK 747 Query: 777 RK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K + +D+ + + H D L++ + +++K + I++ ++ Sbjct: 748 LKEFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFATVN 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K V++ L +R+NA + + +K+ GG G GG+ + AQ+GG + +K D+A+ Sbjct: 808 ND-KIVFTASVSDSLTNRYNAGKIVKEVSKITGGNG-GGKKNFAQAGGKDISKLDEALKK 865 Query: 892 VASFL 896 V + Sbjct: 866 VYELI 870 >gi|302190972|ref|ZP_07267226.1| alanyl-tRNA synthetase [Lactobacillus iners AB-1] Length = 877 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 498/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ + Q+ RAR L S ++ I +L + F Y L+ Sbjct: 414 DAGL-AVDKEEFDAEMRAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N +A+ V + L Sbjct: 861 KNPAGLAKALETVLNEL 877 >gi|312873707|ref|ZP_07733752.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] gi|325911933|ref|ZP_08174336.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D] gi|311090705|gb|EFQ49104.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] gi|325476235|gb|EGC79398.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D] Length = 877 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 327/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S ++ I +L + F Y L+ Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N QA+ V + L Sbjct: 861 KNPAGLAQALETVLNEL 877 >gi|261880084|ref|ZP_06006511.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361] gi|270333239|gb|EFA44025.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361] Length = 886 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 324/935 (34%), Positives = 477/935 (51%), Gaps = 88/935 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 61 RTNSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEFLVDVLHL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D LY+TV++ D+EA K W K L D II +DNFW M +TGPCGPC Sbjct: 121 DPADLYVTVFEGSPEENIPRDDEAAKYWSK--HLPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + + IEIWN+VFMQF +++ L IDTGM Sbjct: 179 SEIHIDSRPAEEKAKKPGRELVNMDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273 G ER+ +LQ K +NYD D+F+ +I+ E +G KY + R Sbjct: 239 GFERLVRMLQGKNSNYDTDIFQPIIKEIEIHSGKKYGFTTPSGKDGKAADNQEKIDIAMR 298 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332 VI DHLR+ +F IADG LP N GYV+RRI+RRA+ YA L M LLP L E Sbjct: 299 VIADHLRTVAFSIADGQLPGNAKAGYVIRRILRRAVRYAYTFLDQRHAFMFKLLPVLIQE 358 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKL 390 MG YPEL + LI ++ E++ F +TL++G+ LL+G + L + L+G AF+L Sbjct: 359 MGGTYPELPAQQELISRVMKEEEDSFLRTLEKGIQLLNGDMEELREQGKTQLDGTKAFRL 418 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + I GL+ +D FN + +Q+ RAR + W LKE Sbjct: 419 FDTYGFPLDLTELICRENGLS-VDEQGFNAQMTKQKERARNA-----AAVENSDWVVLKE 472 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G +F+GYD + RKV +K Sbjct: 473 --GEQEFVGYDYTEYECNITRYRKVTQKKKSF---------------------------- 502 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 EV+ D TPFY E GGQ+GD G + + + + D +++ Sbjct: 503 YEVMLDHTPFYGEMGGQVGDQGVLVNEAETIDVIDTKRENNQSVHII---RTLPKDPNAG 559 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D R + NH+ATHLL +AL +LG HV Q GS ++ D LRFD H + +T Sbjct: 560 FMACVDTDKRTASAANHTATHLLDYALKKVLGDHVEQKGSYVSADTLRFDFAHFQKVTDE 619 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VN ++ ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 ELREVERLVNRLVREDHPMDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFGP------ 673 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S CGG H STG I + I+SESS+ AG+RRIEA+TGQ+ + ++ ++ + Sbjct: 674 SCEFCGGIHAKSTGCIGMFKILSESSVAAGVRRIEAMTGQKCEEAMYTLEDTVRYIKGVF 733 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV 804 + ++ +E+ EE +++ + Q + +N + +I V Sbjct: 734 N-NSKDLKSTIEKFIEENAQMKKEMESFRSQAVDRTAKTLAERVQTVNGMNVVKAVIP-V 791 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862 K ++ +++ I + +I ++G K + ++++ED++ NA + R +AK+ Sbjct: 792 QPASAKDIVFKIRELIPANLICVIGSVYNDKPMLSVMLSEDMVKEHNLNAGQMVREAAKL 851 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + GG GGG+PH AQ+GG N + A+ V Sbjct: 852 IQGG-GGGQPHYAQAGGKNKDGLSVAVDKVVELAN 885 >gi|298372626|ref|ZP_06982616.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275530|gb|EFI17081.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 867 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 332/914 (36%), Positives = 493/914 (53%), Gaps = 73/914 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N R FL+FF+ H+++PS+ ++ +DPTLMFTN+GM FKNI G + Y V Sbjct: 1 MNSKETRKAFLDFFRGKQHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYTRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ LT+ LD Sbjct: 61 ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEFLTEVIKLD 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ D+EA +W++ L ++II DNFW M + GPCGPCS Sbjct: 121 KDRLYVTVFEGSKEDGLSRDDEAAAMWEQF--LPKERIIDGNKKDNFWEMGDVGPCGPCS 178 Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D GL + + IEIWNLVFMQ++++ LP IDTGMG Sbjct: 179 EIHIDIRPQAERDAVDGLTLVNGSHPQVIEIWNLVFMQYDRKADGSLTSLPNKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287 ER+ LQ K++NYD D+F+ +IQ +++GM Y + V RVI DH+R+ +F IA Sbjct: 239 FERLCMALQGKSSNYDTDIFQPIIQEIAKISGMSYRQDAKTDVAMRVIADHIRTIAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG E M L+P LC+ MG + E+I + L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQREAFMYRLVPILCSVMGDNFTEIISQRDL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE+ ++ E+E F +TL+ G+ LL+ + +L+G+VAF LYDT+G PLD+ + IL Sbjct: 359 IEKVIKEEEEAFLRTLETGIRLLEKNMPTAK-GGVLSGEVAFTLYDTYGFPLDLTELILR 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G+ +D+ F+ +++Q+ RAR + W + + G + F+GYD Sbjct: 418 ENGMT-VDVAEFDSEMKKQKERARNA-----ATVETDDWVVVSD--GDSLFVGYDQYCTE 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RKV + + ++V QTPFYAE GG Sbjct: 470 TKIIRYRKVKQKNK----------------------------EYYQLVLSQTPFYAEKGG 501 Query: 527 QLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+GD G G + L K + VH A ++ + I+ ++R + Sbjct: 502 QVGDRGKLTGSEDGSLVEIFDTKTENNLHVHLA--DKLPSNVAQTFTAEINTESRLATAR 559 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATH+LH AL +LG HV Q GS + D LRFD +H + +T E++ +E N I Sbjct: 560 NHTATHILHEALREVLGKHVEQKGSYVCADNLRFDFSHFQKMTDDEIRRVETIANRRIRD 619 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N P+ R + +A A GA AL G KY + VRVV S LCGGTHVS TG+ Sbjct: 620 NYPLEEMRQLPIAEARAMGAIALFGEKYGETVRVVKFGS------SVELCGGTHVSRTGD 673 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I ++ IV+ESS+ AG+RRIEAITG+ + + + S + +++ ++ Sbjct: 674 IGMVKIVAESSVAAGVRRIEAITGEAVEKLIYMHEYVISSAKELFNNTP-DLLKAIQHAV 732 Query: 765 EEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E ++LQ + K+ ++L + + + + + +K++M L+ Sbjct: 733 KENKELQKRVEDFSREKIASMCQELLKEARTVNGIRQIHLKTT-LPPDMIKTLMFQLRNT 791 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + ++G + K S+ ++V++DL+ + FNAV + R +AK + GGG GG+P AQ+G Sbjct: 792 SNDNLFAVIGSVHDNKPSLTVLVSDDLVAKGFNAVQIVRQAAKHIQGGG-GGQPFFAQAG 850 Query: 879 GPNGNKADQAIAGV 892 G N N D AIA Sbjct: 851 GKNPNGLDDAIAEA 864 >gi|254821812|ref|ZP_05226813.1| alanyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950] Length = 904 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 319/932 (34%), Positives = 473/932 (50%), Gaps = 72/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F G P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPEYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK RAI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRRAIELAWTLLTNSVEQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R++ TVY +D+EA +LWK+I+GL ++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERIWATVYFDDDEAVQLWKEIAGLPDERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G + E RYIEIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPEFGVEGGPIANED-RYIEIWNLVFMQNERGEGTGKEDFEILGPLPRKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------EGNNIVNHRVIVDHLRSSS 283 ER+A +LQ N Y+ DL + +I A Y ++ V +RVI DH R+++ Sbjct: 235 ERVAFILQGVHNVYETDLLRPVIDAVAARAPRGYGLSGPEGNHDDDVRYRVIADHSRTAA 294 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 LI DG+ P N+GRGYVLRR++RR + A+LL P++ L+ + MG +YPEL+ Sbjct: 295 ILIGDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVAD 354 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 I +E+ F +TL G L D V + + ++G AF L+DT+G P+++ Sbjct: 355 FDRIRRIAVAEETAFNRTLAAGSKLFDEVAGTTKASGAKAISGSDAFTLHDTYGFPIELT 414 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++ GL +D + F + + EQR RA+A + + + G T+F G+D Sbjct: 415 LEMASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGPTEFTGFD 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQ 517 L + + I G+ V G +VE+V D+ Sbjct: 474 ELTS-----------------------EAKLLGIFVDGKRVPVVTHGTEGVDRVELVLDR 510 Query: 518 TPFYAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 TP YAEAGGQ+ D G G R +TDVQK A+ ++VH VE G +++ Sbjct: 511 TPLYAEAGGQIADEGTISGTGASGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D Q RR + HS TH++H AL +LG + Q GS P LRFD ++ + Sbjct: 571 AVDPQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDEQRT 630 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE+ N + + V T E A A GA A+ G +Y D VRVV + GG S L Sbjct: 631 QIEEVTNQAVQADFEVHTFTEQLEKAKAMGAIAMFGERYPDEVRVVEI----GGPFSLEL 686 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHV ++ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV Sbjct: 687 CGGTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLESFRHLAKERALMAGLASSLKVPS 746 Query: 754 GNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDSK 807 V RV + E + + + K +I +V ++ ++ + + Sbjct: 747 DEVPARVANLVERLKAAEKELERARLAGAKAAATDAAAGAERIGNVRVVAQRMTGGMTAG 806 Query: 808 ELKSVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 +L+S++ ++ K+ ++ L+ + + D A DL + A + Sbjct: 807 DLRSLVGDIRGKLGGDPAVVALIADGEGGSVPYAVAANPAAQDLGLRANDLVKKLAAAV- 865 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+ +AQ G + D A+A + S + Sbjct: 866 DGRGGGKADLAQGSGKDPTGIDAALAAIRSEI 897 >gi|329919606|ref|ZP_08276595.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G] gi|328937411|gb|EGG33833.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G] Length = 877 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S ++ I +L + F Y L+ Sbjct: 414 DAGL-VVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 470 H----------------------ARLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N +A+ V + L Sbjct: 861 KNPAGLAKALETVLNEL 877 >gi|220912769|ref|YP_002488078.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6] gi|219859647|gb|ACL39989.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6] Length = 898 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 322/925 (34%), Positives = 488/925 (52%), Gaps = 64/925 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+ Y Sbjct: 5 MKSQEITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT Sbjct: 64 TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKYAWELLTTSVDDG 119 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L L++TVY+ED+EA +LW K +G+ A++I ++ DN+W+ + GP GPCSEI+ Sbjct: 120 GYGLPPELLWVTVYEEDDEAKELWLKNTGVPAERIQKMGKADNYWNTGQPGPAGPCSEIY 179 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + RYIEIWNLVFMQ++ + + LPK +IDTG+G+ Sbjct: 180 YDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIDNVRSKDDFDIVGELPKKNIDTGLGM 238 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS Sbjct: 239 ERLAMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETPDDPHHTDDVRMRVVGDHIRS 298 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI+DG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 299 ALMLISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPDLLPASRDAMKGVYPVVE 358 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDI 400 I +E++ F +T+ G L+ + ++ L+G+ AF L+DT+G P+D+ Sbjct: 359 TDFARISRIAYAEEKAFLRTIASGTARLEEAVKESKAANKQLSGEDAFALHDTYGFPIDL 418 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D +F ++EQR RA+A + G G + F G T F GY Sbjct: 419 TLEMAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQDILAQGETVFTGY 477 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 L G S V+ ++ G V++A +G ++E+V +TPF Sbjct: 478 TELDG-----------------------ESRVRGLLTGGRPVQQAATGDEIELVLSETPF 514 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAEAGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + + + +D + R Sbjct: 515 YAEAGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVRAAVDRERR 574 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N Sbjct: 575 HAAEQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSN 634 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N V T++M +A A GA AL G Y VRVV + G S LCGGTHV+ Sbjct: 635 LAIRNNYAVETKVMGLAEAKALGAMALFGENYGSEVRVVEI----DGAWSRELCGGTHVA 690 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 691 NTSLIGSLSLLGEQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTDLLKVPSGQLADRI 750 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD-SKELKSVMD 814 + + + + + + S A V+ ++H V + +++ + Sbjct: 751 SATLAKLKATEKELDRLRKEQLAASAAQLVNSAKDAAGVSLIAHDAGSVSGADDIRGLAL 810 Query: 815 ALQKKIQS-GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRP 872 L+ ++ S + V + VL+ E A L RL+A VLGGGG GG+ Sbjct: 811 DLRNRLGSAPAAVAVAGVANDRPLVLVATNEAARNAGVKAGALVRLAAGVLGGGG-GGKD 869 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 +AQ GG + K A+A + ++ Sbjct: 870 DVAQGGGTDAGKVGAALAAILDAVE 894 >gi|218294683|ref|ZP_03495537.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23] gi|218244591|gb|EED11115.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23] Length = 881 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 349/912 (38%), Positives = 505/912 (55%), Gaps = 60/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57 + IR +L FF+ GH LPS SLIP NDP+L+FT++GM P K F G + Sbjct: 1 MRTAEIREKYLSFFESKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ +TT QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172 LD RL++TVY++D+EA+ +W+ + G+ ++I R ++N+W GP GPC Sbjct: 117 LKLDPERLWVTVYEDDDEAYAIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQ----NKQERFILPKMSIDT 226 SEIF+D+G G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +I+ ++G Y G V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFYPIIERVALLSGRPYLGKESVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+ +N GRGYV+RR++RRA+ + LLG EP + L P + +G YPE+ + Sbjct: 297 ADGVTFSNTGRGYVIRRLLRRALRHGYLLGLAEPFLHRLAPVVAELLGDFYPEMRENLQA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLRRLDALLSGLKPGEVLPGQEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464 RG G+D F +A+EEQ+ R+RA + ++ L + GAT+F+GY L Sbjct: 417 ERGY-GVDTEGFKRAMEEQQERSRAAMAFEREIFKRSAQVLEELYAERGATEFLGYGTLE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V A++ E + EA G +V+VV D+TPFYAE Sbjct: 476 -----------------------AEAQVLALLAGDESLPEAGPGTEVQVVLDRTPFYAEG 512 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G G R ++ K GIF+H A VE G+L + +D RR Sbjct: 513 GGQIGDFGLLEWPGGRARVETTLKTERGIFLHRARVEEGVLGVGERVRAVVD-PRRRDTE 571 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ IE VN I Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKGEELERIELLVNRWIM 631 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSALCGGTHVSSTG 703 + PV R + E+A GA AL G KY + VRVV VE G+ S LCGGTHV TG Sbjct: 632 ADFPVTWRYLPLEEAKKEGAMALFGEKYGEVVRVVRVEGSPVPGLESKELCGGTHVRRTG 691 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E++ Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEGAIRFARGALSRLKALAERLEVGEAALEERLEKL 751 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E++ + K +L L + + + + + + +D L+ D L Sbjct: 752 LAEFKAREKEVESLKARLVQAALGGGGVALEEKGGLRWAALELPGLDMAALRQAADDLVN 811 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + ++L G ++ +++ +R A L + + GG G GG+ +AQ Sbjct: 812 RGADVALVLSGGQA------VLKLSKGAQERGLEAGSLFQALTQRAGGRG-GGKGALAQG 864 Query: 878 GGPNGNKADQAI 889 GG + +A A+ Sbjct: 865 GGLDPERAKAAL 876 >gi|309805990|ref|ZP_07700016.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|312872876|ref|ZP_07732938.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|325913725|ref|ZP_08176086.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B] gi|308167593|gb|EFO69746.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|311091610|gb|EFQ49992.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|325476925|gb|EGC80076.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B] Length = 877 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S ++ I +L + F Y L+ Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N +A+ V + L Sbjct: 861 KNPAGLAKALETVLNEL 877 >gi|313471497|sp|B8B4H5|SYAP_ORYSI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|218197887|gb|EEC80314.1| hypothetical protein OsI_22356 [Oryza sativa Indica Group] Length = 996 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 326/926 (35%), Positives = 496/926 (53%), Gaps = 70/926 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +IR FL+F+ GH++LPSSSL+P +DPT+ T +GM+ FK IF G+E T Sbjct: 100 SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 158 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI AW+L TKEF L Sbjct: 159 TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPP 214 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+I+V+ +D+EAF +W G+ ++I R+ +DNFW+ TGPCGPCSEI++D Sbjct: 215 ERLWISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYDFYPE 274 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G + R+IE +NLVFMQ+ +++ L + +IDTGMGLERMA +LQ+ N Sbjct: 275 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 333 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + + Y + N ++I DH+R+ +LI+DG++P+N GRGY Sbjct: 334 NYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGY 393 Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 V+RR++RR + RL+G + L + P++ + I L Sbjct: 394 VVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGEL 453 Query: 352 RSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + E+ RF +TL+RG LLD +L + G L+G F LYDT+G P++I +I Sbjct: 454 QREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEI 513 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 RG+ +D+ F+ +E QR +++A + + + + T+F+GYD L Sbjct: 514 AGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGYDSL- 569 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 +++VK ++ G V G VE+ D+TPFYAE+ Sbjct: 570 ----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPFYAES 607 Query: 525 GGQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 GGQ+GD G ++I DVQK IFVH +++G + + +D Sbjct: 608 GGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDAAVDA 667 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R+ +H+ATHLL AL +I+GS SQ GS + D LRFD +P++ EL IE Sbjct: 668 KLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELMKIES 727 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN ++ + T++M+ +DA +GA A+ G KY ++VRVV V S LCGGT Sbjct: 728 LVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 782 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HVS+T EI I+SE I +G+RRIEA+ G ++ +D ++ L S LKV +V Sbjct: 783 HVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKAEDVN 842 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSV 812 GRVE I EE R + + + ++ V I + + + +VD+ LKS Sbjct: 843 GRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADGLKSA 902 Query: 813 MDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 + L ++ ++L + K S++ + ++ A AK+ GGGG GG Sbjct: 903 AEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIAKLCGGGG-GG 961 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P+ AQ+GG A+ + Sbjct: 962 KPNFAQAGGRKPENLPGALEKARDEI 987 >gi|300768023|ref|ZP_07077929.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181070|ref|YP_003925198.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|300494372|gb|EFK29534.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046561|gb|ADN99104.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 880 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 322/920 (35%), Positives = 489/920 (53%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH ++PS+SL+P +DPTL++ NSG+ K F G P Sbjct: 1 MKKLSSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVGRT RHHT FEMLGNFS G YFK+ AI AW+LLT K Sbjct: 61 PRMTSSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +LY+TVY +D +A K W + +G+ D II++ DNFW + + GP GP SEIF Sbjct: 117 WFGWDPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIF 172 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E RY+E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 173 YDRGEAFNNLADDDPENYPGGENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +V Q N++ DLF +I +E+++ K + V+ +VI DH R+ +F I+D Sbjct: 233 RVVSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M S YP++++ IE Sbjct: 293 GALPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + SE+ RF +TL+ GL LL+ +++ + + L G AFKLYDT+G P ++ ++ Sbjct: 353 KIVASEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAG 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 L +D F ++ QR RAR S ++ L + ++++GYD L Sbjct: 413 DEDL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL--- 466 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V + I+ +V+ SGQ E++F +TPFYAE GG Sbjct: 467 -------------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + D + + A H + +R + + L +D ++ Sbjct: 507 QVADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKPMRKDATYTLNVDLAFHNKVEK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LG H Q GS + PD LRFD TH +T EL +E VND I Sbjct: 567 NHTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPV ++E GA A+ KY VRVVS+ G +S GGTHV ++ E+ Sbjct: 627 ALPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSEL 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSE+ I AG RRIEA+T + A L G+++ LK +A+ +K + + +V ++ Sbjct: 682 GLFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + + Q A + +L + + ++ I +L+ + D + K Sbjct: 742 ADLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + E K ++L+ V++D + A DL + A +GGGG GGRP +AQ+G Sbjct: 802 QYSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGG-GGRPTLAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G A+ +L + Sbjct: 860 GKKPAGLPAALKAAHEWLAE 879 >gi|313115845|ref|ZP_07801279.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310621843|gb|EFQ05364.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 887 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 330/914 (36%), Positives = 496/914 (54%), Gaps = 55/914 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P VTT Sbjct: 6 LNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKC+R D++ VG T RH TFFEMLGNFSF YFKE I AW+ LT + + Sbjct: 66 CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMAIP 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+I+VY+ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+G Sbjct: 122 KDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+Q Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D + ++ E++ Y ++ ++ RVI DH+RS +F+++DGILP+NEGR Sbjct: 241 VGNLFEVDTVQSVLHHVERIANKTYGEDDKTDISIRVITDHIRSCTFMVSDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG T P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 301 GYVLRRLLRRAARHGRMLGITRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ ++ L + +L G FKL DT G PLD+ ++I +G ID Sbjct: 361 FARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQG-IEIDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ + +Q+ RARA L + F T F GY+ L Sbjct: 420 EGFHAEMTKQKERARAERLKKNISGWSEDLFGALNAE-PTVFTGYETLND---------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531 + +V A+ + + + + ++ V VV D+TPFYAE GGQ D Sbjct: 469 -------------TGVVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQAADH 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G L++ DV+K +G +VH ++E GI++ L +D + R ++ NH+ATH Sbjct: 516 GMLNSADCSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLTAQVDKEYRMAIARNHTATH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG HV Q GS + FD TH +T EL ++ VND I +++ V Sbjct: 576 LLQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTV 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R M E+A GA AL G KY VRVV +E S+ CGGTHV +T +I IV Sbjct: 636 REMPIEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL 770 SE+S+ AGIRRIEA+TG+ Q+ L ++AS LK + + R E + E + L Sbjct: 691 SEASVAAGIRRIEAVTGRNLLIRANLQEAMLHTVASTLKANNVTALPVRAEAVMAENKAL 750 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K Q+ + + +I V S + L+ + D ++ K + Sbjct: 751 AKELEEIKAQVAASKVTSLFDNAEEIGGVKIASAYFTGTTGDTLRGMCDTIRDKAVKPAV 810 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ E K ++ + VT+ ++ A L + A + GG G GG+P A +G + K Sbjct: 811 AVLVGKAEDKITMAVTVTKQAQEKGLKAGALVKEIAAIAGGKG-GGKPDFAMAGLKDETK 869 Query: 885 ADQAIAGVASFLKK 898 D+A+A V++ +KK Sbjct: 870 IDEALAAVSAIVKK 883 >gi|256391573|ref|YP_003113137.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928] gi|256357799|gb|ACU71296.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928] Length = 889 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 324/922 (35%), Positives = 499/922 (54%), Gaps = 62/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L+FFQK GH ++PS+SLI NDPT + T +GM PFK F G++ + Sbjct: 1 MESAEIHRRWLDFFQKKGHTVVPSASLI-SNDPTTLLTIAGMAPFKPYFLGEQPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH +FF+M GNFSFG YFKE AI +AW+L T Sbjct: 60 TSVQKCVRTL----DIEEVGKTTRHGSFFQMCGNFSFGDYFKETAIPMAWELCTTPVSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD ++++TVY +D+EA ++WKK +G A++I R+ +N+WSM GPCGPCSE+F Sbjct: 116 GFGLDPEKIWVTVYLDDDEAEEIWKK-AGFPAERIQRLGMKENYWSMGVPGPCGPCSELF 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+E WNLVFMQFE+ ++ P SIDTG+GL Sbjct: 175 YDRGPEF-GEAGGPAVNDERYMEFWNLVFMQFERGAGGDKGGFPILGELPSKSIDTGLGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+AT+LQ N Y+ID + ++ + + G+ Y + V+ RV+ DH+++++ +I D Sbjct: 234 ERLATILQGVNNLYEIDTSRAILDKAASIAGVTYGRDTRTDVSLRVVTDHVKTATMMIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 GI P NEGRGYVLRR+MRRA+ RLLG + L+ MG AYPELI I Sbjct: 294 GITPGNEGRGYVLRRLMRRAIRNMRLLGAHGATIKDLVEITIGAMGQAYPELIADASRIV 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F +TL G + + V + + +GD AFKL+DT G P+D+ ++ Sbjct: 354 AVAVAEETSFLQTLRTGSAMFETVADEAKASGSAVFSGDQAFKLHDTFGFPIDLTLEMAS 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 GL+ +D F + ++EQR +A+A + +G + + L + G + F GY + Sbjct: 414 EAGLS-VDEEGFRRLMKEQRDQAKADARAKKTGHADMSAYRELLDAAGPSAFTGYHEVSS 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++KA++ G++ A G +VE+V D+TPFYAE G Sbjct: 473 -----------------------EGLLKAMLVNGQVGSSAKPGDEVELVLDRTPFYAEGG 509 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G +G+G ++ DVQK + H AIV G + +D R +S Sbjct: 510 GQLADHGLIRLGNGALAEVVDVQKPVGDLIAHRAIVRDGEVVLGAEAWGEVDTARRAAIS 569 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATH++H A +LG +Q GS +P RFD + + L +E VN+++ Sbjct: 570 RAHTATHMVHKAFRELLGETATQAGSENSPGRFRFDFASPGAVPHSVLADVEQRVNELLI 629 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +L V ++M++ +A A GA AL G KY DRVRVVSV G + LCGGTHV +TG Sbjct: 630 DDLSVTAQVMSQPEAKAMGAMALFGEKYGDRVRVVSV-----GEWAHELCGGTHVDNTGR 684 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++SESSI +G+RR+EA+ G A + L + + LA +K +V RV I Sbjct: 685 LGLVKLLSESSIGSGVRRVEALVGTDAYNFLAREHVLVSQLAEVVKARPEELVERVGGIM 744 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + R + + K ++ + V ++H + +L+ ++ ++ Sbjct: 745 TKLRDAEKEISALKAGQLLQIAGSLVDGASDVHGVAVVTHQAPDGASADDLRKLVLDVRG 804 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ + ++ + + V+++ T + A +L R +AK LGGGG GG+ +AQ Sbjct: 805 RLGTRPAVVAVAAAAGERPVVVIATNEGSRGLGLKAGELVRSAAKTLGGGG-GGKDDVAQ 863 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 GG + A+ GV + + Sbjct: 864 GGGTDATAIPAALEGVGRAVAE 885 >gi|160942602|ref|ZP_02089847.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii M21/2] gi|158446081|gb|EDP23084.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii M21/2] gi|295103506|emb|CBL01050.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3] Length = 886 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 328/914 (35%), Positives = 493/914 (53%), Gaps = 55/914 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P VTT Sbjct: 6 LNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKC+R D++ VG T RH TFFEMLGNFSF YFK+ I AW+ LT + + Sbjct: 66 CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKDEVIPWAWEFLTSDEWMAIP 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+I+VY+ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+G Sbjct: 122 KDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+Q Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D + ++ E + G Y + ++ RVI DH+RS +F+++DGILP+NEGR Sbjct: 241 VGNLFEVDTVQSVLHHVEHIAGKTYKQDPKTDISIRVITDHIRSCTFMVSDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 301 GYVLRRLLRRAARHGRMLGIDHPFLVDLVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ ++ L ++L+G AFKL DT G PLD+ ++I +GL ID Sbjct: 361 FARTIDAGMNILNNMIDRLEKAHQKLLSGMDAFKLNDTFGFPLDLTKEIAAEQGLE-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ +++Q+ RARA L + F E T F GYD L Sbjct: 420 DGFHAEMKKQKERARAERLKKNISGWSEDLFGALEAE-PTVFTGYDTLTD---------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531 V A+ + + + + ++ V VV D+TPFYAE GGQ D Sbjct: 469 -------------KGTVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQAADH 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G L++ DV+K +G +VH ++E GI++ L +D R ++ NH+ATH Sbjct: 516 GVLNGAECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDVLTAQVDKGYRMAIARNHTATH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG HV Q GS FD TH +T EL ++ VND I ++ V Sbjct: 576 LLQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELARVQKIVNDKIFDSMNVTV 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M E+A GA AL G KY VRVV +E S+ CGGTHV +T +I IV Sbjct: 636 QEMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL 770 SESS+ AGIRRIEA+TG+ Q+ L +A+ LK + + R E + E + + Sbjct: 691 SESSVAAGIRRIEAVTGRNLLIRANLQEAMLHDVANTLKANNVAALPARAEAVMAENKAM 750 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + K ++ + + + V S + L+ + D+++ K + ++ Sbjct: 751 SRELEEMKAKIAASKVDSLFDNAEEADGVKIASAYFTGTTGDTLRGMCDSIRDKAVNPVV 810 Query: 826 MLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ E K ++ + V + A L + + + GG G GG+P A +G + K Sbjct: 811 AVLVGKAEDKITMAVTVNKLAQEKGLKAGVLVKELSAIAGGKG-GGKPDFAMAGLKDETK 869 Query: 885 ADQAIAGVASFLKK 898 D+A+A V++ +KK Sbjct: 870 IDEALASVSAIVKK 883 >gi|254557076|ref|YP_003063493.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1] gi|254046003|gb|ACT62796.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1] Length = 880 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 322/920 (35%), Positives = 489/920 (53%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH ++PS+SL+P +DPTL++ NSG+ K F G P Sbjct: 1 MKKLSSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVGRT RHHT FEMLGNFS G YFK+ AI AW+LLT K Sbjct: 61 PRMTSSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +LY+TVY +D +A K W + +G+ D II++ DNFW + + GP GP SEIF Sbjct: 117 WFGWDPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIF 172 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E RY+E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 173 YDRGEAFNNLADDDPENYPGGENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +V Q N++ DLF +I +E+++ K + V+ +VI DH R+ +F I+D Sbjct: 233 RVVSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M S YP++++ IE Sbjct: 293 GALPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + SE+ RF +TL+ GL LL+ +++ + + L G AFKLYDT+G P ++ ++ Sbjct: 353 KIVASEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAG 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 L +D F ++ QR RAR S ++ L + ++++GYD L Sbjct: 413 DEDL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL--- 466 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V + I+ +V+ SGQ E++F +TPFYAE GG Sbjct: 467 -------------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + D + + A H + +R + + L +D ++ Sbjct: 507 QVADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKPMRKDATYTLNVDLAFHNKVEK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LG H Q GS + PD LRFD TH +T EL +E VND I Sbjct: 567 NHTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPV ++E GA A+ KY VRVVS+ G +S GGTHV ++ E+ Sbjct: 627 ALPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSEL 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSE+ I AG RRIEA+T + A L G+++ LK +A+ +K + + +V ++ Sbjct: 682 GLFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + + Q A + +L + + ++ I +L+ + D + K Sbjct: 742 ADLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + E K ++L+ V++D + A DL + A +GGGG GGRP +AQ+G Sbjct: 802 QYSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGG-GGRPTLAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G A+ +L + Sbjct: 860 GKKPAGLPAALKAAHEWLAE 879 >gi|319947816|ref|ZP_08022010.1| alanyl-tRNA synthetase [Dietzia cinnamea P4] gi|319438540|gb|EFV93466.1| alanyl-tRNA synthetase [Dietzia cinnamea P4] Length = 859 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 319/894 (35%), Positives = 469/894 (52%), Gaps = 57/894 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F + GH +PS+SL+ +DP L+F N+GMVPFK F GQE P Y Sbjct: 1 MQTHEIRRRFLDHFVRAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGQETPPYATA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT Sbjct: 60 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIRHAWSLLTSSLDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F +D L++TVY +D+EA+ +W+ + G+ ++I R DN+WSM GPCGPCSEIF Sbjct: 116 GFGIDPALLWVTVYLDDDEAYGIWRDVIGVPEERIQRRGMADNYWSMGVPGPCGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFMQ E+ + + LPK +IDTGMG+ Sbjct: 176 YDRGPAY-GVDGGPEADEDRYIEIWNLVFMQNERGEGSGKDSFEILGPLPKQNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E+++G KY + + V RVI DH R++ LI+D Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDTAERLSGAKYGADSASDVRFRVIADHARTAYMLISD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + RLLG T M + + +G ++PE + IE Sbjct: 295 GVTPGNEGRGYILRRLLRRIVRSVRLLGATGETMAEFMATVRDAIGPSFPETVSGYERIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KTL+ G L + + +L+G AF L+DTHG P+D+ ++ Sbjct: 355 RIAVAEEAAFLKTLESGTQLFERAAESARRSGAAVLSGQQAFALHDTHGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + EQR+RA+A S + + G T F G+ L Sbjct: 415 EAGL-QVDEEGFRSLMSEQRARAKADSQAKKHAHADLSVYRDFLDAGETVFTGFTDLTD- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV G+ V A G +VE V D+TPFYAE+GG Sbjct: 473 ----------------------ESRLLGIVSGGQAVPVAREGDEVEFVLDRTPFYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 QLGD G G ++++ DVQK + +++H ++ G + + +D + R+ + Sbjct: 511 QLGDRGMISTAGFQMRVDDVQKIGKKLWIHKGVLTGGEVEAGQIVTAAVDPEWRKGATQG 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL ILG Q GS P +RFD S I + L IE+ N + + Sbjct: 571 HSATHLVHAALRQILGPEAVQAGSLNKPGYMRFDFNWSGSIPADVLAQIEEVTNSAVDAD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T ++A GA AL G Y VRVV + GG S LCGGTHVSS+ +I Sbjct: 631 YGVNTIETTLDEAKRMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVSSSAQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ E+S+ +GIRR+EA G A H + + LA+ LK + R+ + + Sbjct: 687 PVSLLGEASVGSGIRRVEAYVGMDAYRHQARERALVSGLATSLKAPADELPDRIAALTAK 746 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+ + + S + V F++H + +L+++ L+ ++ Sbjct: 747 LRETEKALESLRAAQLASQAGDLLASAEDLDGVRFLAHSAPGGAAGDLRTLASDLKGRLG 806 Query: 822 SGI-IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 S ++L+ + K +I VT +R A DL + + L G GGG+ Sbjct: 807 SDAGVVLLTAPGQDKVPFVIAVTPAAQERGLRAGDLVKAISPAL-GARGGGKAD 859 >gi|213963758|ref|ZP_03392008.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno] gi|213953638|gb|EEB64970.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno] Length = 877 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 327/925 (35%), Positives = 478/925 (51%), Gaps = 78/925 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP ++ V Sbjct: 1 MTSQEIRNLFLKFFESKGHTIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGHAKPKHKRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEIYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EAF +WK+ ++ D I+ DNFW M + GPCGPC+ Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAFDIWKER--IAEDHILLGNKKDNFWEMGDQGPCGPCT 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + IEIWN VFM+F ++ LP ++DTGMG Sbjct: 179 EIHVDIRSDEEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 ER+ VLQ K +NYD D+F LI E++T Y + + RVI DH+R Sbjct: 239 FERLCMVLQNKQSNYDTDVFTPLIHKVEEITKSHYNSNGRVTPEQEQVNIAIRVISDHIR 298 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + +F IADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG+ +PE Sbjct: 299 AVAFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLAAQMGATFPE 358 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + LI ++ E+ F +TL++GL++LD ++ + + L+G AF+LYDT+G P D Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQNSPDKQ-LSGGKAFELYDTYGFPKD 417 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + IL +GL +D F L++Q+ R+RA + W L++ +FIG Sbjct: 418 LTALILSEKGLT-MDEEGFEVQLQKQKERSRAA-----AQVKTDDWVVLRDDDEE-EFIG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L + + R+ VE G ++VF+ TP Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FY E GGQ+GD G L KK + +H A E + Sbjct: 504 FYPEGGGQVGDKGTLQAANGELIYILDTKKENNLIIHIA--EHLPTELNDPFKAEVHLVA 561 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +TS ELK +E V Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPEALRFDFSHFAKLTSDELKEVERLV 621 Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + +P+ R + + A+ SGA AL G KY DRVR++ S LCGGTH Sbjct: 622 NKRIFEKIPLQEHRNIPIQQAVESGAMALFGEKYGDRVRMIQFGD------SKELCGGTH 675 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +TG+I I+SE ++ AGIRRIEAIT A + + Q++ ++ + +K +Q V Sbjct: 676 VKNTGDIWFFKIISEGAVAAGIRRIEAITRGGAMQYFIEQEQLVERIKETVKNTQDPV-K 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVM 813 + + EE L + K + + +I + + + + + LK + Sbjct: 735 AITHLQEENAALHRELEQLKKEQAKQLKANLKAEFTEINAIQCLIKQV-DAEVATLKDLA 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGR 871 L +++ + +E KA +L + ++L +A + R K + GGG GG+ Sbjct: 794 FELGNEVKDAFVFFASAHEEGKALLLCYINKELAQAKGLDAGKIVRELGKYIHGGG-GGQ 852 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P A +GG +A+ V FL Sbjct: 853 PFFATAGGKKPEGIAEALFKVKDFL 877 >gi|29840633|ref|NP_829739.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC] gi|33301683|sp|Q821R2|SYA_CHLCV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29834983|gb|AAP05617.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC] Length = 875 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 334/897 (37%), Positives = 496/897 (55%), Gaps = 48/897 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H ++PSS + P NDP+++FTN+GM FK+IF +E Y Sbjct: 1 MLSNTLRSNFLKFYANRHHTIVPSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI AW++ F+LD Sbjct: 61 TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+Y TV+++D+EAF LW+K L +++I R+T DNFWSMAETGPCG CSE+ FD+GE Sbjct: 121 PDRIYATVHEKDDEAFALWEK--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGE 178 Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P EGER++E WNLVFM+F + + LP +DTG GLER+ ++L Sbjct: 179 KFGTAASPLEDTEGERFLEYWNLVFMEFNRTAEGSLLALPNKHVDTGAGLERLVSILSGT 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ + LI +EQ++G Y + RVI DH RS SF IADG+LP N RG Sbjct: 239 NTVFEADVLRLLISKTEQLSGKTYHADEALGAAFRVIADHTRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+T+P + ++P+L MG AYPEL + I+E + E+E + Sbjct: 299 YVLRKILRRAVNYGKRLGFTQPFLADIVPSLVDTMGEAYPELRLSLSQIQEVMTMEEENY 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 K+L RG LL VL I++G+ AFKL DT+GLPLD + + +D+ +F Sbjct: 359 FKSLHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIALLAKDYDFT-VDMETF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 Q EE + R+R + S +T+ ++ SL ++F+GY+ L F Sbjct: 418 YQLEEEAKERSRKNIAKSHS-STDTVYDSLS-LGENSEFVGYNDLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++A+V G+ V +K ++ TPFYAE GGQ+GD+G Sbjct: 466 -------------IEALVSNGKQVSSLKEKEKGALILKVTPFYAEKGGQIGDSGEIFCSD 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ GI +HH V +G L + ++ ++ R+++ NH+ HLLH AL Sbjct: 513 GTFIVSHTTSPKAGIVIHHGEVSQGQLSQDQAVTAQVNCIRRKKIGNNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNRE 657 LG H+ Q GS + +R D TH K I +L SIE VN+ I +N V TR M + Sbjct: 573 VTLGDHIRQAGSYVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAMYSD 632 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + G KY+D VRVVS S LCGGTH TG++ I+ E ++ Sbjct: 633 VMNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHAEFTGDLGYFRILKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA+TG+ A + +E L +A L+ + ++ +++ + EE ++ ++ Sbjct: 687 TGIRRIEAVTGREAEALAHQDNENLNEIALVLQSPRDQILNKLQNVLEERKEQAKQISEL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L ++ DV+++ H + E +S L+ + L +KI +I L K Sbjct: 747 ENKLIHSLLDKLIDGCQQVDDVSYLIHHLPESESHRLQQYANCLHQKIPLRLISLWTTQK 806 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + +++DL+ A DL ++ GG GG+ AQ + QA Sbjct: 807 NGKYIIFSRISDDLVKQGLQAKDLLKIVLTPC-GGRWGGKDIFAQGS---ADNLPQA 859 >gi|159476100|ref|XP_001696152.1| hypothetical protein CHLREDRAFT_119554 [Chlamydomonas reinhardtii] gi|158275323|gb|EDP01101.1| predicted protein [Chlamydomonas reinhardtii] Length = 879 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 330/914 (36%), Positives = 478/914 (52%), Gaps = 55/914 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F++ GH LPSSSL+P DPT++ T +GM+ FK +F GQ T Sbjct: 1 TGAEIREAFLSFYESKGHTRLPSSSLVPE-DPTVLLTIAGMLQFKPVFLGQAPRKVATAT 59 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T F L Sbjct: 60 TTQKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPA 115 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R++++VY+ED EA +W+ + G++ ++I R+ DNFWS TGPCGPCSE+++D Sbjct: 116 ERVWVSVYEEDAEAEAIWRDVVGVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPE 175 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G S E+ R+IE +NLVFMQ + L +IDTGMGLERMA +LQ +N Sbjct: 176 -RGTQDASLEDDSRFIEFYNLVFMQLNRCPDGSLEPLAAKNIDTGMGLERMAQILQGVSN 234 Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL ++ + + G+ Y + +VI DH R+ +++++DG+ P+N GRGY Sbjct: 235 NYETDLIFPIVAKAAAIAGVDYASAQPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRGY 294 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + RLLG E + + P + + I + L E+ F Sbjct: 295 VLRRLLRRVVMKGRLLGIREVFTPAVAEVAVALSAACDPAVQRNAQRIYDELAREESLFA 354 Query: 360 KTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL+RG LD L + + G AF LYDT G PL++ Q++ ARG +D+ F Sbjct: 355 TTLERGQKQLDEYLDRAAAGGKAIAGPDAFMLYDTFGFPLELTQELAEARG-VDVDVSGF 413 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +E QR R++ L + +L G T F GY RG+ Sbjct: 414 EAEMEAQRQRSKDSRETLDLTAQAGL-AALAAAVGPTAFTGYSATRGA------------ 460 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD- 537 V+ +++ G VE +G + EV+ D TPFYAE+GGQ+GD G Sbjct: 461 -----------GRVRGLMRGGAPVEVVEAGDRCEVLLDSTPFYAESGGQVGDMGVLTAHG 509 Query: 538 ----GIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 L ++D QK +FVH V+ G LR + +D RR++ +H+ATHL Sbjct: 510 SGEAAAELSVSDCQKAAGGSVFVHTCEVKAGQLRVGDQVTALVDEDLRRRVRAHHTATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG Q GS LRFD ++ +T+AE+ +E VN +A P+ TR Sbjct: 570 LQSALKAVLGPDTCQQGSLCNFQRLRFDFNLARGMTAAEVAEVERLVNGWVAAAAPLETR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ A A+GA A+ G KY+D VRVV V S LCGGTHV++T EI I+S Sbjct: 630 VMDLAAAKAAGATAMFGEKYDDTVRVVDVPG-----ISMELCGGTHVANTAEIGAFKILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +GIRR+EA+ G A +L D ++ L+ LK+ V RV + E R+ Sbjct: 685 ESGIASGIRRVEAVAGPAAVEYLNQVDGLVRGLSGQLKLKPEEVPARVSAMQAELREAAK 744 Query: 773 IHAKRKLQLNVEDLSC---HKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A K QL V + ++ + V++K L+ LQ+ + Sbjct: 745 QLADLKAQLAVAQSQALVSQAVTAPQGGKVLVAELAGGVEAKALQEAAVKLQEALGDPAA 804 Query: 826 MLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +++ + K + + + + A L AKV GGGG GG+P +AQ+GG + +K Sbjct: 805 VVLASRVDDKVNFVAAFSAGAVKAGVQAGKLVGAVAKVCGGGG-GGKPALAQAGGKDASK 863 Query: 885 ADQAIAGVASFLKK 898 +A+A + L + Sbjct: 864 TSEALALASKMLNE 877 >gi|309803595|ref|ZP_07697687.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] gi|309809661|ref|ZP_07703517.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|312875207|ref|ZP_07735220.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|308164343|gb|EFO66598.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] gi|308170021|gb|EFO72058.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|311089314|gb|EFQ47745.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] Length = 877 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288 R+ +V+Q+ N++ DLF +I+ +E+++ K + V ++I DH+R+ SF IAD Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +TL GL LLD ++ + K L+G AFKL+DT+G P ++ + Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S ++ I +L + F Y L+ Sbjct: 414 DAGL-AVDKEEFDAEMKAQKDRARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V++ G++ ++FD+TPFYAE GG Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G L + + A H + ++ VL +D Q RR L Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 +L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K ++ +V + Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R+ Q + K Q+N S I + ++ I+ +L+ + D + + Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L K ++ + + + A DL +++A + GGGG GGRP+MAQ+GG Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860 Query: 880 PNGNKADQAIAGVASFL 896 N +A+ V + L Sbjct: 861 KNPAGLAKALETVLNEL 877 >gi|323436121|ref|ZP_01050628.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134] gi|321496436|gb|EAQ38546.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134] Length = 870 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 339/918 (36%), Positives = 485/918 (52%), Gaps = 72/918 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R FLEFF+ H ++ S+ ++ +DPTLMFTN+GMVPFK F G P + Sbjct: 1 MKSQEVRKQFLEFFKSKNHSIVASAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNSRL 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+ LT+ +D Sbjct: 61 TDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKVD 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + +Y+++++ DE EA+ +W K + +II DNFW M GPCGPCS Sbjct: 121 KDSIYVSIFEGDESEGLERDQEAYDIWTK--HIDESRIINGNKKDNFWEMGAQGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + IEIWNLVFMQ+ + LP +DTGMG Sbjct: 179 EIHVDIRSAEEKAAVDGKSLVNMDHPLVIEIWNLVFMQYNRLANGSLTKLPNQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIA 287 ER+ VLQ +NYD D+F L++ E +T K + RVI DH+R+ SF IA Sbjct: 239 FERLCMVLQGVQSNYDTDVFTPLMREVETITSSKCGETEETDIAVRVIADHVRAVSFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K L Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFIYKLVSTLVNQMGDAFPELEAQKNL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 I +R E+ F +TLD+GL+LLD V+++ + ++GD AF+LYDT+G P+D+ IL Sbjct: 359 ITNVIREEEASFLRTLDKGLILLDNVIANTS-GDTVSGDKAFELYDTYGFPIDLTALILS 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 + L +D F AL+EQ+ R+RA + E +++ ++ +FIGYD L S Sbjct: 418 EKNLK-LDEAGFEAALKEQKDRSRAATK------VETDDWNILQEDSEEEFIGYDTLEAS 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RK E G+ ++VF+ TPFY E GG Sbjct: 471 IKITRYRKT---------------------------ESKKDGELYQLVFNLTPFYPEGGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + KK + +H A + TE + +D + R + + N Sbjct: 504 QVGDKGYLETPSGEVVYIIDTKKENNLIIHLA--KNLPRSTEGTFKAVVDVKQRSRTAAN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH L ILG+HV Q GS + LRFD +H +TS ELK +ED VN I +N Sbjct: 562 HTATHLLHQGLRKILGTHVEQKGSMVHSRNLRFDFSHFSKVTSEELKEVEDFVNARIREN 621 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L + R + + AI GA AL G KY D VR + S LCGGTHV +TG+I Sbjct: 622 LSLEEQRGIPYDQAIQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I SE ++ +GIRRIEAIT A+ + + E + + LK +Q V + + + Sbjct: 676 WHFKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPV-KAITSLLD 734 Query: 766 EYRKLQLIHA---KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E L+ K K Q DL+ I V+F++ + ++D+ +K++ L + Sbjct: 735 ENAALKKQVEALIKEKAQNLSGDLAKEFEDIDGVDFLAKKV-DLDAGAIKNLAFKL-GEN 792 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + +L G + KA + ++++L+ NA + R K + GGG GG+P A +G Sbjct: 793 KDNVFLLFGTEQNGKALLSCYISKELVASKNLNAGTVVRELGKHIQGGG-GGQPFFATAG 851 Query: 879 GPNGNKADQAIAGVASFL 896 G N D AIA V ++L Sbjct: 852 GKNPAGIDAAIAEVKNYL 869 >gi|290953862|ref|ZP_06558483.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] gi|295312765|ref|ZP_06803502.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] Length = 804 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 351/838 (41%), Positives = 495/838 (59%), Gaps = 45/838 (5%) Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 2 TVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKLPV 61 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D GE Sbjct: 62 EKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHGED 121 Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GGLPG+ E +G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 122 VAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQNVH 181 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGYVL Sbjct: 182 SNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGYVL 239 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F KT Sbjct: 240 RRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFLKT 299 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 ++ G+ + D + +L D ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 300 IENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFLAQ 357 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ Q+ R++ G + SL ++F GY L Sbjct: 358 MQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL------------------ 393 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + V I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 394 -----IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGFEF 448 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + DVQK E +H + +G L L + + R + NHSATHLL+ AL +L Sbjct: 449 VVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKLVL 507 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A + Sbjct: 508 GGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKAKS 567 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G+R Sbjct: 568 LGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASGVR 622 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K +L Sbjct: 623 RIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKKEL 682 Query: 782 ---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + D+ I D+ + + VD K L++ +D + K +I ++ + K Sbjct: 683 LSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKVQF 741 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ + + G GGGR MAQ GG N DQA++ V F+ Sbjct: 742 VIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 798 >gi|254993607|ref|ZP_05275797.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-064] Length = 826 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 332/865 (38%), Positives = 483/865 (55%), Gaps = 56/865 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D+G E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 M +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F I DG Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ ++ Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F ++EQR RAR+ + S + L + F+GY+ Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEQV-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S + ++Q +VEE +G + +V+F +TPFYAE+GGQ+ Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I L Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE++ + R Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742 Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + +L + +I V ++ ++ D +L+ +D + K G Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848 I++L + + K +++ V+E+ + Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIK 826 >gi|300778975|ref|ZP_07088833.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910] gi|300504485|gb|EFK35625.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910] Length = 867 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 307/918 (33%), Positives = 481/918 (52%), Gaps = 75/918 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL++F+ H ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + Sbjct: 1 MTSQEIRQKFLDYFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDFFLGYKTPTAPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDLD+VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKKEAIAFAWELLTEVYGIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+T+++ D+ A+ WK +S D+II DNFW M E+GPCGPCS Sbjct: 121 KENLYVTIFEGDASENLDRDQNAYDFWKS--HISEDRIINGNKKDNFWEMGESGPCGPCS 178 Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + +PG +++ + +E+WNLVFM+F ++ + LP +DTGMG Sbjct: 179 EIHIDLRTPEEKAAVPGISLVNKDHPQVVEVWNLVFMEFNRKADKSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----GNNIVNHRVIVDHLRSSSFL 285 ER+ LQ K++NYD D+F LI E+++G KY + RV+VDH+R+ SF Sbjct: 239 FERLCMALQGKSSNYDTDVFTPLIAKVEELSGKKYTGILEDEKDIAIRVVVDHIRAVSFA 298 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP++ G GYV+RRI+RR + Y+ LG EP + L+ L +MG +PE+ + Sbjct: 299 IADGQLPSSGGAGYVIRRILRRGISYSYRFLGMKEPFLYKLVAVLQEQMGPFFPEIEKQG 358 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 L+ E ++SE++ F T++ GL+ ++ ++ ++L F+LYDT+G P D+ + Sbjct: 359 KLVTEVIKSEEDSFLNTIETGLIRVEKLIQQTIADNQKVLPTLEVFELYDTYGFPDDLTR 418 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 I +GL ID F E+QR R++ + +K++ + + F+GYD Sbjct: 419 IIAEEKGLT-IDEEGFKAEREKQRKRSQQD-------SAQKVYDWVVLEEKPESFVGYDQ 470 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + ++ RKV E G+ +VV +PFY Sbjct: 471 IESETYITRYRKV----------------------------ENKDGEFYQVVLSSSPFYP 502 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G Q+ + +K+ I ++ R+ Sbjct: 503 EGGGQVGDKGVLENAAESFQVLETKKENGLIISLI---NGLPKDAGALFYAKVNASERKN 559 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHS THLLH AL +LG+HV Q GS + PD LRFD +H +T E+ IE+ VN Sbjct: 560 SQANHSVTHLLHEALRDVLGTHVEQKGSYVGPDYLRFDFSHFNKMTEEEIALIEEKVNHK 619 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +++ + R + ++A+ GA AL G KY D VR++ S LCGGTHV + Sbjct: 620 IKESIALQEFRSIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHVKN 673 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T EI I SE S AGIRRIEAI+G ++ + ++++ L+ LK +VV +E Sbjct: 674 TSEIGHFKITSEGSAAAGIRRIEAISGDKSEEYFKNLEKQITELSQLLKSK--DVVRSIE 731 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 ++ EE L+ K + ++ + ++ + + +D+ +K ++ L+ Sbjct: 732 KLIEENTSLKAEVDALKKEKAKGEIGEWKNAYEQKGNKQLLVKKTSLDAGSVKDIVFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++I S + +++ + K + + V++DL + A + + AK + GGG GG P A + Sbjct: 792 REIPSSVTIILS-DADGKPMITVGVSDDLAADYQAGAIVKDLAKEIQGGG-GGNPGFATA 849 Query: 878 GGPNGNKADQAIAGVASF 895 GG N + A + Sbjct: 850 GGKNLEGLENAYQKALNI 867 >gi|295101950|emb|CBK99495.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6] Length = 886 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 326/914 (35%), Positives = 493/914 (53%), Gaps = 55/914 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P VTT Sbjct: 6 LNELRDKYLTFFEGKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKC+R D++ VG T RH TFFEMLGNFSF YFK+ I AW+ LT + + Sbjct: 66 CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKKEVIPWAWEFLTSDEWMAIP 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+I+VY ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+G Sbjct: 122 KDRLHISVYKEDDEAYDIWTKKVGVAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+Q Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D + ++ E + G Y + ++ RVI DH+RS +F+++DGILP+NEGR Sbjct: 241 VGNLFEVDTVQSVLHHVEHIAGKTYGADPKEDISIRVITDHIRSCTFMVSDGILPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG + P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 301 GYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ ++ L + +L G FKL DT G PLD+ ++I +G ID Sbjct: 361 FARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQG-IEIDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ + +Q+ RARA L + F T+F+GYD L+ Sbjct: 420 EGFHAEMTKQKERARAERLKKNISGWSEDLFGTL-TAEPTEFVGYDTLKSD--------- 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531 S+V A+ + + + + ++ V VV D+TPFYAE GGQ D Sbjct: 470 --------------SVVVALSDEETLTDAIATDEQAKEGVLVVLDKTPFYAEMGGQAADH 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G L++ DV+K +G +VH +E GI+ L +D + R ++ NH+ATH Sbjct: 516 GVITGAECVLRVQDVKKTPKGYYVHTCTLESGIVHVGDHLTARVDKEYRMAIARNHTATH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG HV Q GS FD TH +T EL ++ VND I +++ V Sbjct: 576 LLQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELVRVQKIVNDKIFESMNVTV 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M E+A GA AL G KY VRVV +E S+ CGGTHV +T +I IV Sbjct: 636 KEMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL 770 SESS+ AGIRRIEA+TG+ Q+ L ++A+ LK + + R E + E + + Sbjct: 691 SESSVAAGIRRIEAVTGRNLLIRANMQEAMLHAVANTLKANNVAALPARAEAVMAENKAM 750 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 K ++ + + + DV S + L+ + D ++ ++ + Sbjct: 751 SKELEDIKAKVAASKVTSLFDNAETVGDVKIASAYFTGTSGDTLRGMCDTIRDNAKAAAV 810 Query: 826 MLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ + K ++ + VT+D A +L + + + GG G GG+P A +G + K Sbjct: 811 AVLVGKSDDKITMAVTVTKDAQAKGLKAGNLVKEISAIAGGKG-GGKPDFAMAGLKDETK 869 Query: 885 ADQAIAGVASFLKK 898 D+A+A V ++K Sbjct: 870 IDEALAAVKGIVEK 883 >gi|240170724|ref|ZP_04749383.1| alanyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478] Length = 904 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 325/933 (34%), Positives = 478/933 (51%), Gaps = 74/933 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWSLLTNGVAAG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ TVY +D+EA LW+ ++GL ++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQDVAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229 +D+G P G P +E+ RY+E+WNLVFMQ E+ + LP+ +IDTGMG Sbjct: 176 YDRGPDYGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286 +ER+A VLQ+ N Y+ DL + ++ A V Y + V +R+I DH R+++ LI Sbjct: 234 VERVALVLQDVHNVYETDLLRPVVDAVALVAARPYDAGNHADDVRYRIIADHSRTAAILI 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P N+GRGYVLRR++RR + A+LL P++ L+ + MG +YPEL+ Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTPIVGDLMATVRDAMGPSYPELVSDFDR 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F +TL G L D V + +++G AF L+DT+G P+++ ++ Sbjct: 354 INRIAVAEETAFNRTLASGSRLFDEVAGTTKAKGATVVSGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D F + + EQR RA+A + T+ + G T+F G+D L Sbjct: 414 AAESGLR-VDEAGFRELMAEQRRRAKADAAARKHAHTDLTAYRELVDAGPTEFTGFDELA 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--------EAVSGQKVEVVFD 516 + + I G+ V +A +G +VE+V D Sbjct: 473 S-----------------------EARILGIFVDGKRVPVVAHGSEGQAANGDRVELVLD 509 Query: 517 QTPFYAEAGGQLGDT----GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +TP YAE+GGQ+ D G G R +TDVQK A+ ++VH VE G +++ Sbjct: 510 RTPLYAESGGQIADEGTISGTGSGGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 569 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D RR + HS TH++H AL +LG + Q GS P LRFD + P+T + Sbjct: 570 AAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGPLTEDQR 629 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 IE+ N+ + + V T E A A GA AL G Y D VRVV + GG S Sbjct: 630 THIEEVTNEAVQADFEVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSLE 685 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTHV S+ +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV Sbjct: 686 LCGGTHVESSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745 Query: 753 QGNVVGRVEEIWEEYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806 V RV + + + + + +I +V ++ IS + S Sbjct: 746 SDEVPTRVANLVDRLKAAEKELERVRLANARAAAVNAAAGAERIGNVRVVAQRISGGITS 805 Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863 +L+S++ ++ ++ S +I L+ + + D A +L + A + Sbjct: 806 ADLRSLVGDIRGRLGSDPAVIALIAEGENDSVPYAVAANPAAQDLGIRANELIKPLAAAV 865 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+ +AQ G D A+ V S + Sbjct: 866 -DGRGGGKADLAQGSGKKPAGIDAALDAVRSEI 897 >gi|28378871|ref|NP_785763.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1] gi|38258328|sp|Q88V10|SYA_LACPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28271708|emb|CAD64614.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1] Length = 880 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 322/920 (35%), Positives = 489/920 (53%), Gaps = 63/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + S IR +L+FF + GH ++PS+SL+P +DPTL++ NSG+ K F G P Sbjct: 1 MKKLSSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVGRT RHHT FEMLGNFS G YFK+ AI AW+LLT K Sbjct: 61 PRMTSSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +LY+TVY +D +A K W + +G+ D II++ DNFW + + GP GP SEIF Sbjct: 117 WFGWDPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIF 172 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E RY+E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 173 YDRGEAFNNLADDDPENYPGGENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIAD 288 R+ +V Q N++ DLF +I +E+++ K + V+ +VI DH R+ +F I+D Sbjct: 233 RVVSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M S YP++++ IE Sbjct: 293 GALPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + SE+ RF +TL+ GL LL+ +++ + + L G AFKLYDT+G P ++ ++ Sbjct: 353 KIVASEESRFNETLNDGLNLLNNLIAETKQTGHDTLAGKDAFKLYDTYGFPFELTKEYAG 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 L +D F ++ QR RAR S ++ L + ++++GYD L Sbjct: 413 DEDL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL--- 466 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V + I+ +V+ SGQ E++F +TPFYAE GG Sbjct: 467 -------------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + D + + A H + +R + + L +D ++ Sbjct: 507 QVADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKPMRKDATYTLNVDLAFHNKVEK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LG H Q GS + PD LRFD TH +T EL +E VND I Sbjct: 567 NHTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LPV ++E GA A+ KY VRVVS+ G +S GGTHV ++ E+ Sbjct: 627 ALPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSEL 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSE+ I AG RRIEA+T + A L G+++ LK +A+ +K + + +V ++ Sbjct: 682 GLFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + + Q A + +L + + ++ I +L+ + D + K Sbjct: 742 ADLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + E K ++L+ V++D + A DL + A +GGGG GGRP +AQ+G Sbjct: 802 QYSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGG-GGRPTLAQAG 859 Query: 879 GPNGNKADQAIAGVASFLKK 898 G A+ +L + Sbjct: 860 GKKPAGLPVALKAAHEWLAE 879 >gi|126663290|ref|ZP_01734288.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria bacterium BAL38] gi|126624948|gb|EAZ95638.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria bacterium BAL38] Length = 878 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 328/928 (35%), Positives = 489/928 (52%), Gaps = 82/928 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF+ NGH ++PS+ ++ +DPTLMF NSGM FK F G P + Sbjct: 1 MKSQDIRKQFLQFFESNGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGNPKSPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWQLLTEVYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY++V++ D+EA+ +WK++ +S D+II DNFW M + GPCGPCS Sbjct: 121 KENLYVSVFEGNPDENVPFDQEAWDIWKEL--ISEDRIILGNKKDNFWEMGDQGPCGPCS 178 Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + + G + + + +EIWN VFM+F ++ LP +DTGMG Sbjct: 179 EIHVDLRTEAEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDH 278 ER+ LQ KT+NYD D+F LI+ EQ+TG+KY N + N RVIVDH Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIEKVEQITGLKYTSNEVKNISEEQNKTNIAIRVIVDH 298 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 +R+ +F IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MG + Sbjct: 299 VRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFINKLVEVLANQMGEFF 358 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PE+ + L+ +R E+ F +TL++GL LL+ V++ E+ +G AF+LYDT G P Sbjct: 359 PEIKSQQQLVTNVIREEEASFLRTLEQGLQLLENVMAETSGKEV-SGAKAFELYDTFGFP 417 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ IL +G +D FN A++EQ++R+RA S + + W L T F Sbjct: 418 IDLTALILREKGY-DLDEAGFNVAMQEQKARSRAA-----SEVSTEDWNVLIPGNVET-F 470 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GYD + RK V+ G ++V D Sbjct: 471 VGYDQTANEVKITRIRK---------------------------VDSKKDGVLYQIVLDN 503 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFY E GGQ+GD G + + I D +K+ I ++ E V ++ Sbjct: 504 TPFYPEGGGQVGDKGTLVSANETIDIIDTKKENNLILH---FAKQLPENIEAGFVAKVNT 560 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R S NHSATHL+H AL TILG+HV Q GS + P+ LRFD +H ++ EL+ +E Sbjct: 561 DLRTSTSKNHSATHLMHLALRTILGTHVEQKGSLVNPNYLRFDFSHFSKVSDDELRQVEA 620 Query: 638 NVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 +VN I L +V R + ++A+ GA AL G KY D VR++ S LCGG Sbjct: 621 SVNAQIEAQLQLVEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFGD------SKELCGG 674 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 HV +T EI I+SE ++ AGIRRIEAITG + Q+ L + LK + +V Sbjct: 675 IHVKNTAEIWHFKIISEGAVAAGIRRIEAITGDAVKDFYTSQENTLAEIKEVLK-NPQDV 733 Query: 757 VGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKS 811 + V + ++ KL+ + K++ L ++ ++F++ + ++ K Sbjct: 734 LKSVASLQDDNAKLKKQVEQLVKEKIEGLKNSLVADFQEVNGIHFLAKQV-DLSMSSTKD 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869 + A+ + + L I ++ ++ ++++L+ NA ++ R K++ G GG Sbjct: 793 LAQAIGTSKPNAFVFLASI-EDNAPNIHCYISKELVAEKGLNAGNVIRELGKLI-DGNGG 850 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897 G+P A G N +A+ V F+K Sbjct: 851 GQPFFASGKGKNVGGIKEALEKVVDFVK 878 >gi|116074098|ref|ZP_01471360.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916] gi|116069403|gb|EAU75155.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916] Length = 892 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 339/912 (37%), Positives = 505/912 (55%), Gaps = 56/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF+ GH+ S+SL+P DPT++ T +GM+PFK IF GQ++ T Sbjct: 16 SGAEIRAAFLDFFEARGHKRTASASLVPE-DPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T F LD Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQQVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI+ + + G+ Y+ + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIYPLIETAAGLAGVDYKALDEKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P + + A M AYP+L++ K +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGIAKPFLTVMGEASIALMQEAYPQLLERKEVILAELKREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ + G AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 370 ETLERGEKLLADVLAAKPAQ--IAGAQAFELYDTYGFPLELTQEIAEEHGLT-VDLAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQR RA+A ++ + + I + + AT F GYDLL Sbjct: 427 AAMEEQRQRAKAAAVSIDLTLQDAID-QVAAELEATSFRGYDLLEH-------------- 471 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 SS V+A+V GE ++A +G V+VV D TPFY E GGQ+GD G +GD Sbjct: 472 ---------SSSVQALVVNGEPAQQAGAGDAVQVVLDTTPFYGEGGGQVGDRGVLVGDGP 522 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + + + +FVH VERG L + +D RR+ NH+ATHLL Sbjct: 523 DGNGLIVVIEGVSRNRSVFVHSGRVERGSLSIGDVVHGQVDKACRRRAQANHTATHLLQA 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ + Q GS + + LRFD + + + EL+ IE +N I++ + + M Sbjct: 583 ALKQVVDPGIGQAGSLVDFERLRFDFHCPRAVKADELEQIEALINGWISEAHSLEVQEMA 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A+GA A+ G KY D V D S LCGGTHV++T EI L IV+ES Sbjct: 643 IEQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESG 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G ++L +D +K L K +V RV + +E + A Sbjct: 698 VAAGIRRIEAVAGGAVLAYLNERDLVVKQLGDRFKAQPAEIVERVLALQDELKSTGKALA 757 Query: 776 KRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L V + + ++ + + VD L+ +L ++ G +++G Sbjct: 758 AAQAELAVAKSAALASKAVAVGELQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGG 817 Query: 831 SKE----KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + K ++ + ++ A AK+ GGGG GGRP++AQ+GG +G Sbjct: 818 LPDPADQGKVILVAAFGKTVIAQGQQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDGGAL 876 Query: 886 DQAIAGVASFLK 897 D A+A L+ Sbjct: 877 DGALASAREQLE 888 >gi|313471498|sp|B9FSH5|SYAP_ORYSJ RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|222635304|gb|EEE65436.1| hypothetical protein OsJ_20798 [Oryza sativa Japonica Group] Length = 932 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 326/926 (35%), Positives = 496/926 (53%), Gaps = 70/926 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +IR FL+F+ GH++LPSSSL+P +DPT+ T +GM+ FK IF G+E T Sbjct: 36 SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 94 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI AW+L TKEF L Sbjct: 95 TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPP 150 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+I+V+ +D+EAF +W G+ ++I R+ +DNFW+ TGPCGPCSEI++D Sbjct: 151 ERLWISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYDFYPE 210 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G + R+IE +NLVFMQ+ +++ L + +IDTGMGLERMA +LQ+ N Sbjct: 211 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 269 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + + + Y + N ++I DH+R+ +LI+DG++P+N GRGY Sbjct: 270 NYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGY 329 Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 V+RR++RR + RL+G + L + P++ + I L Sbjct: 330 VVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGEL 389 Query: 352 RSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + E+ RF +TL+RG LLD +L + G L+G F LYDT+G P++I +I Sbjct: 390 QREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEI 449 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 RG+ +D+ F+ +E QR +++A + + + + T+F+GYD L Sbjct: 450 SGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGYDSL- 505 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 +++VK ++ G V G VE+ D+TPFYAE+ Sbjct: 506 ----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPFYAES 543 Query: 525 GGQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 GGQ+GD G ++I DVQK IFVH +++G + + +D Sbjct: 544 GGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDAAVDA 603 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R+ +H+ATHLL AL +I+GS SQ GS + D LRFD +P++ EL IE Sbjct: 604 KLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELMKIES 663 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN ++ + T++M+ +DA +GA A+ G KY ++VRVV V S LCGGT Sbjct: 664 LVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 718 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HVS+T EI I+SE I +G+RRIEA+ G ++ +D ++ L S LKV +V Sbjct: 719 HVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKAEDVN 778 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSV 812 GRVE I EE R + + + ++ V I + + + +VD+ LKS Sbjct: 779 GRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADGLKSA 838 Query: 813 MDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 + L ++ ++L + K S++ + ++ A AK+ GGGG GG Sbjct: 839 AEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIAKLCGGGG-GG 897 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P+ AQ+GG A+ + Sbjct: 898 KPNFAQAGGRKPENLPGALEKARDEI 923 >gi|55981800|ref|YP_145097.1| alanyl-tRNA synthetase [Thermus thermophilus HB8] gi|62296736|sp|P74941|SYA_THET8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|55773213|dbj|BAD71654.1| alanyl-tRNA synthetase [Thermus thermophilus HB8] Length = 882 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 353/912 (38%), Positives = 510/912 (55%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57 + IR FL FF+ GH LPS SLIP +DP+L+FT++GM P K F G + Sbjct: 1 MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ VTT Q+C+R G D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172 LD RL++TV+++D+EA+++W+ + G+ ++I R ++N+W GP GPC Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQ----NKQERFILPKMSIDT 226 SEIF+D+G G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +IQ +++G YEG V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG +N GRGYV+RR++RRA+ + LLG ++P + L P + +G YPE+ + Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464 RG G+D F +A+EEQ+SR+RA ++ L + GAT+F+GY+ L Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V A++ + + EA G +V+VV D+TPFYAE Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G G R ++ +K GIF+H A VE G+LR + +D RR Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ +E VN I Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703 + PV R M E+A GA AL G KY + VRVV VE G+ S LCGG HV TG Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E++ Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 E ++ + K +L L S + + + + +D+K L+ D L Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + ++L G K S + A L R A+ GG G GG+ +AQ Sbjct: 812 ARGADVALVLSGGQAVLKLS-----PKAQGMGLEAGALFRALAEKAGGRG-GGKGALAQG 865 Query: 878 GGPNGNKADQAI 889 GG + KA +A+ Sbjct: 866 GGLDPRKAREAL 877 >gi|237736819|ref|ZP_04567300.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] gi|229420681|gb|EEO35728.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] Length = 866 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 323/910 (35%), Positives = 492/910 (54%), Gaps = 92/910 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+EFF+K H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y Sbjct: 1 MLTGNQIRKEFIEFFKKKNHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QK +R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L Sbjct: 60 VTTYQKSIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIVWSWEFVTEVLGL 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L+++V+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 116 DKDKLWVSVFTTDDEAEKIWIEKCNFPKERIVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175 Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + R+IEIWNLVF ++ + LPK +IDTG GLER+ ++ Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERVTAMV 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K+NN++ DL L++ + ++T KY + + +VI DH R+ +FLI DG++P+NE Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNTKYGEDKEKDFSLKVITDHSRAVTFLINDGVIPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + RLLG +E + ++ + M AYP+L I++ ++ E+ Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQSELFLYKMVDKVVEMMNEAYPDLNDNLEHIKKVVKIEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F +TLD+G+ L++ + + + + L+GD+ F+LYDT+G P ++ ++I +G + Sbjct: 356 EKFSRTLDQGIQLVNQEIEKVKSEGGKKLSGDITFRLYDTYGFPYELTEEICEEKG-VEV 414 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +EEQ+ +ARA + + +KYGAT F+GY+ L+ + + R Sbjct: 415 SREEFEAKMEEQKEKARAAREVVMEKGQDSFIEEFYDKYGATNFVGYETLKETAKLLSIR 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + G+ ++FD TPFY E+GGQ D G Sbjct: 475 EG---------------------KDGKT----------LMIFDTTPFYGESGGQTADIGV 503 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+G ++ DVQ K +GIF H + +G + +L +D NR + NH+ATHLL Sbjct: 504 ISGNGFEGKVVDVQ-KQKGIFTHTVEIVKGEAKEGEEYLLEVDEMNRLATAKNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + LRFD H + +TS E++ +E+ VN+ IA++L V R Sbjct: 563 HKALREVLGTHVQQAGSLVNGQRLRFDFNHYEAMTSEEIEKVENLVNEKIAESLCVTVRN 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A GA AL G KY D V S LCGGTH+ + +I L I SE Sbjct: 623 MSMDEAKKEGAMALFGDKYGDVV-----RVVKVDDFSIELCGGTHIDNIAKIGLFKIESE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA+TG A + + LK +A +K + NVV RVE++ E R+ Sbjct: 678 SGIAAGVRRIEAVTGLGAYELVKKMERTLKEIAKTVKSDEANVVERVEKMTETLRENSKE 737 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K ++ + + +I V + + ++EL+ ++D+L+ K+ S +++L Sbjct: 738 IETLKAKITNYEAGSLNAAAEEINGVKVVIKTFKDKTAEELRQMVDSLKDKLGSCVVVLA 797 Query: 829 GISKEKKASVLIVVT-----------------------------------EDLLDRFNAV 853 E KA + VT +D AV Sbjct: 798 S--GEDKAVFAVGVTKDLIGKVKAGNLVKEAAQIAGGNGGGRPDFAQAGGKDASKIEEAV 855 Query: 854 DLARLSAKVL 863 R + K L Sbjct: 856 AKVRETLKTL 865 >gi|88607771|ref|YP_505615.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ] gi|123494530|sp|Q2GJ36|SYA_ANAPZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88598834|gb|ABD44304.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ] Length = 876 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 369/888 (41%), Positives = 520/888 (58%), Gaps = 54/888 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61 +VS IR FL+FF+K GH PS+ LI D +L+FTN+GMVPFK TG + Sbjct: 5 SVSGIREAFLDFFEKQGHTRYPSAPLIAEGDASLLFTNAGMVPFKQRFITGVSD--VKTA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW +TKE L Sbjct: 63 TTSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKETAIELAWRFVTKELGLS 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G + KIIRI+T+DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 123 KERLWITVYSEDQEAFDIWKKITGYTDHKIIRISTSDNFWSMGDTGPCGPCSEIFYDYGD 182 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGGLPG+ E +G RY EIWNLVFMQ+ + E LP+ IDTGMGLER+A V+Q Sbjct: 183 GVPGGLPGTDESDGARYTEIWNLVFMQYNRDESGELHKLPRGCIDTGMGLERIAAVMQGV 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ D+F+ +I S + G + HRVI DH+R++SFLIA+G+ P NEGR YV Sbjct: 243 CDNYETDMFQAIIDRSRSIFGSHDHP---IAHRVIADHVRAASFLIAEGLTPGNEGRNYV 299 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ Y + + + ++P L E MG+AYPE+++A+ I TL+ E+ Sbjct: 300 LRRIIRRAVRYIYQIVGDKFSLHEVVPVLTREGSAGYMGNAYPEIVKAEQSIVSTLKIEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 + F TL RG +L+ + L E+L+G++AFKLYDT+G PLDI D+ RGL D Sbjct: 360 DGFADTLRRGTGILEQEIRGLKSGEVLSGEIAFKLYDTYGFPLDITLDVAKERGLK-FDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ + +Q+ ++R H G SG + + K+ AT F+GY+ Sbjct: 419 DGFNRCMAKQKEQSRKHWKG--SGEAQTASSHILNKHKATSFVGYEN------------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--- 532 + V S+VK I GE V G++ V D TPFYAE+GGQ GDTG Sbjct: 464 ----------HRVKSMVKEIFCSGEAVTSMGEGEEGIAVLDITPFYAESGGQEGDTGLLK 513 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + K+ + +H V RG L+ + +D Q R +L NHSATH+ Sbjct: 514 VVTTKCGSVAEVVDTTKSNNVHLHKIRVIRGTLKVGDVVEAVVDKQRREKLRANHSATHI 573 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L L T++G + Q GS + D LRFD +H+ P+T +L+++E VN I N PV+ Sbjct: 574 LQSVLRTLIGEGIQQKGSLVAADKLRFDFSHALPLTKEQLRTVEMEVNRQIMANQPVIID 633 Query: 653 IMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + EDA+ GA AL G KYND+ VRVVS+ S LCGGTHV TG+I I+ Sbjct: 634 HCSLEDAVQEGAIALFGEKYNDQNVRVVSMGS------SKELCGGTHVRFTGDIGAFRII 687 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ I G+RRIEAITG S + E L+ +A L V V+ ++++++ E R++ Sbjct: 688 SETGIAQGVRRIEAITGHEVVSSMNRDSESLQQVAECLSVPVDQVIEKLKKVFVEQREIN 747 Query: 772 LIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A C ++ ++ S + + V +++K+ + ++ + Sbjct: 748 KKMATICYTHMNSCAKCIEVGSEIKLYVGEFSNIPVEV---VASYVKEKMHTNEVLAIST 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + K+ + ++ V E + R A D+ + ++ G GGG +A++ Sbjct: 805 TDGKRTTFIVGVGESAIKRIKATDIVKALQQI--QGKGGGNASIARAS 850 >gi|212696194|ref|ZP_03304322.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM 7454] gi|212676823|gb|EEB36430.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM 7454] Length = 867 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 312/900 (34%), Positives = 498/900 (55%), Gaps = 54/900 (6%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L FF K H +L S SLIP +D +L+ N+GM P K FTG++K T+ Sbjct: 7 NELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRATS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R G D++ VG T RH TFFEMLGNFSFG YFK AI A++ LT+ ++++ Sbjct: 67 SQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTENLEINKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L+++VY+ D+EA+K+W + GLS D+I+R DNFW + E GPCGP SEIF D+G Sbjct: 123 LLWVSVYENDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVEK 181 Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +++ +R++E+WNLVF QF + +E L +IDTGMGLERMA VLQ K Sbjct: 182 AIDENDNKPGNDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQNK 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID+ +++I+ E+++ KY + ++ RVI DH ++ +F+++DGI P+NE RG Sbjct: 242 DNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEKRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + ++ + Y EL+ K I ++ E+ F Sbjct: 302 YVLRRLIRRAFRHGKLLGIEGEFLSSVIDCVIDSYKDEYDELVDRKDKIISVIKKEEANF 361 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 T+D GL +L+ + L + L+G AFKLYDT+G PLD+ ++IL L +D Sbjct: 362 QNTIDSGLDILNEYIKDLRDKNKDTLDGKEAFKLYDTYGFPLDLTKEILTENNLK-VDTK 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +E QR+ AR + + I +++ T+F+GYD L Sbjct: 421 EFDKQMENQRNLARNARKSDAGWSLDSIN---IDEFDKTEFVGYDDLE------------ 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V + + + E V G K V+ D+T FYAE GGQ+ DTG I Sbjct: 466 -----------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLVIT 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 D + ++ +VQKK E I + +++ + +D + R ++ NH+ATHLL A Sbjct: 515 DSAKAKVYNVQKKNEIIIHYVEVIDGDLNL--AKADFIVDKERRLDITRNHTATHLLDQA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L IL V Q GS + + LRFD T+ ++ E++ IE+ +N+ I Q L V IM Sbjct: 573 LRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIRKIENEINEKIRQQLKVKKEIMPY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +++ GA L KY D VRVVS+ +S LCGG HV+++ E+++ I+ ESS Sbjct: 633 KESEKLGAIGLFEDKYKDMVRVVSI-----DDYSIELCGGCHVNNSSEVLMFKILQESSA 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +GIRRIEAITG++ +L + ++ LK + N++ + E + EE + L+L K Sbjct: 688 ASGIRRIEAITGRKVYDYLNSNLGLINVVSKVLKTNPKNILSKAESLNEEIKNLKLDIQK 747 Query: 777 RK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K + +D+ + + H D L++ + +++K + I++ ++ Sbjct: 748 LKEFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFATVN 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K V++ L +R+NA + + +K+ GG G GG+ + AQ+GG + +K D+A+ Sbjct: 808 ND-KIVFTASVSDSLTNRYNAGKIVKEVSKITGGNG-GGKKNFAQAGGKDISKLDEALKK 865 >gi|290890700|ref|ZP_06553770.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429] gi|290479675|gb|EFD88329.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429] Length = 885 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 318/921 (34%), Positives = 485/921 (52%), Gaps = 65/921 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N + IR FL+FFQ GH++ PS SLIP +DP+L++ NSG+ K F G P Sbjct: 1 MKKLNSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI AW+LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + ++ +L+IT Y D E +LW+ + A I +DNFW + E GP GP +E+F Sbjct: 117 WYGIEPEKLFITYYPRDTETKELWESQADFVAGHTIP--QDDNFWDIGE-GPSGPDTEVF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G E ERY+EIWN+VF QF + + LP +IDTG Sbjct: 174 FDRGPKFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFL 285 MGLER+ ++ + N++ DLF +I+ EQ++G +Y + V+ +VI DH+R+ +F Sbjct: 234 MGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVIADHIRAVTFA 293 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I+DG LP N GRGYV+RR++RRA+ + R LG +P + L+P + M + YPE+++ + Sbjct: 294 ISDGALPGNTGRGYVIRRLLRRAVMHGRKLGIEKPFLTQLVPIVGKIMEAYYPEILENED 353 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403 I ++SE+ RF KTL GL LLD ++ KD ++G AFKL+DT+G PL++ ++ Sbjct: 354 KIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATHISGKDAFKLFDTYGFPLELTEE 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D SF++ +++Q++RAR L + + +L + ++G Sbjct: 414 QAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQD--EALMSLKVPSVYVG---- 466 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 ++ + + AI+ + V++A +GQK ++FD+TPFYAE Sbjct: 467 ------------------WKQSSVDDAKIAAIIVDDQQVDDAKAGQKALLIFDKTPFYAE 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ D G ++ + A H L+ + L +D Sbjct: 509 MGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISDLKIGQKVNLRLDMHRHVA 568 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 +S NH+ATHLL AL ++ ++ Q GS + PD LRFD TH P+ + L IED VN Sbjct: 569 VSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDLVNQK 628 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 IA LPV + E A GA A+ G KY +VRVVS+ G + GGTH +T Sbjct: 629 IADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTHAKNT 683 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761 E+ L IVSES I AG RRIEA+TGQ A L ++ LK A FL + +V ++ Sbjct: 684 SELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVPDKIV 743 Query: 762 EIWEEYRKLQLIHAKR--KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDAL 816 ++ + +Q K D K ++++ I L+ ++D Sbjct: 744 DLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKIVDEW 803 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +++ S +I+ + + KA ++ + + A ++ + + + GG GGGRP AQ Sbjct: 804 RQRAVSDLII-IATNNNGKALLVAASAK--PNEVKAGNVVKAISPKIQGG-GGGRPDFAQ 859 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N A+A V+ +L+ Sbjct: 860 AGGKNPAGIANALASVSEYLE 880 >gi|298207536|ref|YP_003715715.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] gi|83850172|gb|EAP88040.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] Length = 870 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 330/919 (35%), Positives = 486/919 (52%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR TFLEFF+ H ++ S+ ++ +DPTLMFTN+GM FK F G P V Sbjct: 1 MTSQDIRKTFLEFFKSKKHSIVTSAPMVIKDDPTLMFTNAGMNQFKEFFLGNGDPKSSRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + ++ Sbjct: 61 TDTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWAWELLTEVYKVN 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+T+++ D EA+ WK +S D+I+ DNFW M GPCGPCS Sbjct: 121 KDNLYVTIFEGDASESLERDTEAYDFWKN--HISEDRILNGNKKDNFWEMGAQGPCGPCS 178 Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G +E+ + +EIWNLVFMQF ++ LP +DTGMG Sbjct: 179 EIHVDLRSKEEKDKVSGAELVNEDHPQVVEIWNLVFMQFNRKADGSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ VLQ+KT+NYD D F LI+ E +T Y + + RVI DH+R+ +F IA Sbjct: 239 FERLCMVLQDKTSNYDTDAFTPLIKEIETITATTYGSSEKTDIAIRVISDHVRAVAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RR + Y L EP + L+ L +MG AYPEL++ + L Sbjct: 299 DGQLPSNTGAGYVIRRILRRGIRYGFTFLNTKEPFIYKLVKTLTKQMGDAYPELVKQENL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 I ++ E+ F +TLD+GLVLLD ++ EI +G AF+LYDT+G P+D+ IL Sbjct: 359 IYNVIKEEESSFLRTLDQGLVLLDNIIEKSKSKEI-SGKKAFELYDTYGFPIDLTSLILR 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 RG + ++ F+ L++QR R+R + W +L + +FIGYD L Sbjct: 418 ERGFS-LNEAEFDAELKKQRDRSREATKTET-----GDWVTLIDD-AEQEFIGYDHLEAQ 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RK VE G+ ++VF+ TPFYAE GG Sbjct: 471 VKLTRYRK---------------------------VENKKDGEMYQLVFNLTPFYAEGGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + KK + VH + E + +D + R + + N Sbjct: 504 QVGDKGYLESPDGDVVYIVDTKKENNLVVH--FTKNLPKHPEATFKAVVDSKQRMRSASN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++LG+HV Q GS + LRFD +H +++ EL +ED VN I + Sbjct: 562 HTATHLLHQALRSVLGTHVEQKGSMVHSGNLRFDFSHFSKVSAEELTQVEDFVNARIREQ 621 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LP+ R + + A+ GA AL G KY D VR + S LCGGTHV++T EI Sbjct: 622 LPLEEQRNIPHQKALDEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVNNTSEI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I+SE ++ +GIRRIEAI+ ++ Q++ L+ + S LK + + V V + E Sbjct: 676 RHFKIISEGAVASGIRRIEAISNDAVDTYYAKQNQILEDVKSILK-NPQDTVKAVSSLQE 734 Query: 766 EYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E +L+ + K + +L I +N ++ I ++D+ +K + + ++ Sbjct: 735 ENSELKKQVEQLLKDKAKHLKAELKQELETINGINVLAKEI-DLDAGSMKDLAFEIGGEV 793 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + ++ G + KA + ++++L+ NA + R K + GGG GG+P A +G Sbjct: 794 DN-LFLVFGSNHNGKALLSCYISKNLVAEKDLNAGKIIRDLGKHIQGGG-GGQPFFATAG 851 Query: 879 GPNGNKADQAIAGVASFLK 897 G + A+ +K Sbjct: 852 GKKPDGISAALQASKDIIK 870 >gi|323359964|ref|YP_004226360.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037] gi|323276335|dbj|BAJ76480.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037] Length = 889 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 317/920 (34%), Positives = 483/920 (52%), Gaps = 59/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL+FF+K H ++PS+SL+ +DP L+FT +GMVPF +G P Y Sbjct: 1 MKTAEIAQRFLDFFEKKNHTIVPSASLV-TDDPALLFTVAGMVPFIPYLSGVVPPPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 VQKC+R ND++ VG+T RH TFF+MLGN+SFG YFKE AI+ AW+LLT Sbjct: 60 ADVQKCIRT----NDIEEVGKTPRHGTFFQMLGNWSFGDYFKEDAIRFAWELLTAPEAEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D + L++TVY+ED+EA LW K+S L ++I R+ + N+WS GP GPCSEIF Sbjct: 116 GLAFDPKDLWVTVYEEDDEARDLWLKLSTLPDERIQRLGKDTNYWSTGLPGPAGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 FD+G G G + + +RY+EIWNLVFMQ+E + + LP +IDTGMGL Sbjct: 176 FDRGPAY-GIDGGPATDDDRYVEIWNLVFMQYEITNVRSKYDFDIVGELPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A + Q N Y+ D + ++ + ++ G Y + V R++ DH+RSS L+A Sbjct: 235 ERIAFIKQGVDNMYETDQVRPVLDLAAKLAGKAYGAESHEDDVRLRIVADHVRSSLMLLA 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGY+LRRIMRRA+ RLLG L A M +YPE+ + Sbjct: 295 DGVTPSNEGRGYILRRIMRRAIRSMRLLGVEGATFPELFAASRDAMKESYPEVEADYARL 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E++ F +TL G +LD ++ L+G AF L+DT+G P+D+ +I Sbjct: 355 SAYAIAEEQTFLRTLAAGSAILDQSVAEAKNGGGTTLSGSEAFLLHDTYGFPIDLTLEIA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL+ +D +F+Q + EQR+RA+A + ++ + G T F GY L+ Sbjct: 415 EEAGLS-VDRGAFDQLMLEQRTRAKADARARKGAIADQSAYREFRALGETVFTGYTELQ- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V I+ G+ + A GQ E++ +T YAE+G Sbjct: 473 ----------------------TESKVLGILVDGQGTDRASEGQIAEIITGETALYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ D G +G G L++ DVQ+ G+ H V G + +D NR Sbjct: 511 GQVADKGTIVGPGYELEVLDVQRPVPGLISHTVEVTTGEVSVGAPATTVVDALNRHSAQQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HSATHL+H A+ LG +Q GS +RFD + ++ IED N+ + Sbjct: 571 AHSATHLVHAAIRDTLGKTATQTGSLNRAGYMRFDFSWGSALSPETRTEIEDIANNAVRD 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V TR+M+ ++A A+GA AL G KY D VR+V + GG S LCGGTHV+ + EI Sbjct: 631 NLEVTTRVMSLDEAKAAGAMALFGEKYGDTVRMVDI----GGPWSRELCGGTHVARSSEI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ +V E S+ A RR+EA+ G A L + + L++ LK + + R+ E+ Sbjct: 687 GLVNLVGEQSVGASNRRVEALVGLDAFRDLAAERAIVSQLSTSLKTPREQLTSRIAELAA 746 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819 + + A + Q L + + V ++ + + +++S+ ++ + Sbjct: 747 NLKAAEKKIAAFEAQALTGRLPQLVEAAISVGTVRVVAESLGEGASADDVRSLALQVRDR 806 Query: 820 IQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + ++ L ++ +A+V++V E +R A +A + GGGGGGRP +AQ Sbjct: 807 LGTDPAVVALASVA-GGRATVVVVTNESARERGLAAGALAKAAAGILGGGGGGRPDVAQG 865 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG + QA+ G+ + ++ Sbjct: 866 GGTDATALPQALEGIVADVR 885 >gi|313205146|ref|YP_004043803.1| alanyL-tRNA synthetase [Paludibacter propionicigenes WB4] gi|312444462|gb|ADQ80818.1| alanyl-tRNA synthetase [Paludibacter propionicigenes WB4] Length = 869 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 333/919 (36%), Positives = 480/919 (52%), Gaps = 74/919 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +FL+FF GH+++PS+ ++ +DPTLMFTN+GM FKNI G + Y V Sbjct: 1 MTSQEIRQSFLDFFASKGHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYSRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ LT+ LD Sbjct: 61 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLTEVLKLD 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+TV++ D+EA +W + L +II DNFW M +TGPCGPCS Sbjct: 121 KDRLYVTVFEGYAPEGLERDDEAAAIWAQF--LPEHRIINGNKKDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + GL + + IEIWN VFMQ+ ++ LP IDTGMG Sbjct: 179 EIHIDIRDNDERAKIDGLTLVNGSHPQVIEIWNNVFMQYNRKADGSLEGLPAKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ +Q +NYD D+F +I +V G +Y + + RVI DH+R+ +F I Sbjct: 239 FERLCMAMQGVQSNYDTDVFTPIIAEIGRVCGAEYGKDEKVDIAMRVIADHIRTIAFSIT 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG M L+ L MG AYPEL+ K L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRHAFMYKLITVLSENMGKAYPELLSQKTL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++ E+E F +TL+ G+ LLD V++ + G VAF LYDT G PLD+ + I Sbjct: 359 IEKVIKEEEESFLRTLETGIKLLDKVMADSKAAAKTEIEGKVAFTLYDTFGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L ++I FN +++Q+ RAR + T W +++E G ++F+GYD Sbjct: 419 LRENNFT-VNIDEFNSEMQKQKERARNA-----AATETGDWVTVRE--GDSEFVGYDFNE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RKV + + ++V +TPFYAE Sbjct: 471 ADTEILRYRKVKQKNQ----------------------------EYYQIVLSKTPFYAEM 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G D + I D +K+ + + TID + R+ Sbjct: 503 GGQVGDCGTLKSDHGSIDIIDTKKENNLAVHI---ANKLPEDVTETFTATIDIEKRKATE 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++++E N I Sbjct: 560 CNHSATHLLHEALREVLGTHVEQKGSFVSPDALRFDFSHFQKLTKEEIRAVEAIANRKIR 619 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N P+ R +A A GA AL G KY + VRV+ S LCGGTHVS+TG Sbjct: 620 ENYPLQERRETPIAEAQAMGAMALFGEKYGETVRVIQFGS------SVELCGGTHVSATG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I L+ +V+ESSI AGIRRIEAITG+ L Q E + L + +V+ + + Sbjct: 674 NIGLVRVVAESSIAAGIRRIEAITGKAVEELLDKQQETIGEAKELLNNAP-DVISAIRRL 732 Query: 764 WEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQK 818 EE L+ K+ + L + + + + + + K++ ++ Sbjct: 733 SEESADLKKQVEAFVHEKIMSLRDKLLAEATIVKGFKVIQYE-GSLTADQTKTLAFQIRN 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + + G + K S+ +++++DL+ NA ++AR +AK + GGG GG+P A + Sbjct: 792 VQAEKLFFVAGCVADGKPSLTVLLSDDLVAGGLNATNIAREAAKEIQGGG-GGQPFFASA 850 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N +AIA L Sbjct: 851 GGKNLAGIQKAIAKALEAL 869 >gi|148284335|ref|YP_001248425.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong] gi|205830167|sp|A5CD03|SYA_ORITB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146739774|emb|CAM79640.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong] Length = 891 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 388/890 (43%), Positives = 530/890 (59%), Gaps = 40/890 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N++ IRTTF+EFF+K GH SSSL+P NDP+L F N+G+V FK+ E Y V Sbjct: 8 NINQIRTTFIEFFKKYGHHYASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG K +QL W LTKE +D Sbjct: 68 TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWSFLTKELFID 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL +TVY D E KLW+ I+GL +IIRI T+DNFWSM GPCGPC+EIF+D G+ Sbjct: 128 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 187 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGGLPG+ E G RY+EIWN+VFMQ+EQ N+ R L K IDTG GLER+ATVLQ Sbjct: 188 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 247 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLFK+LI E +T +K G +HR+I DHLR+S+FLIADG++P+N+GRGYV Sbjct: 248 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 307 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM LG EP+M L+P L EMG Y EL + LI LR+E+E+F Sbjct: 308 LRRIMRRAMNQIHQLGCKEPVMHQLVPGLINEMGDFYKELRIRQELITYLLRNEEEKFKT 367 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL LL+ +L L+G +AFKLYDT+G P D+ QDIL R I+ F+Q Sbjct: 368 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRS-ISINKTEFDQ 426 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RAR G GS + + LKE++ AT+F+GY L + Sbjct: 427 NMLEQQNRARQLWKGQGSNKEQLLLEKLKEEFRATEFVGYSLYQ---------------- 470 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534 IV +++Q + VE Q + ++ +QTPFY ++GGQ+GD G Sbjct: 471 -------AEGIVISLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQMGDIGII 523 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + +TD K VH + G + + + ID Q R QL I+HSATH+LH Sbjct: 524 KNNECTIHVTDTIKLFGCTHVHICKIVSGKININAVVHMAIDKQYRTQLQIHHSATHILH 583 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG+H+ Q GS + D LRFDV+H I+ L IE+ VN+II N V IM Sbjct: 584 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISREILTKIENRVNEIILNNTAVKLMIM 643 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + AIA GA AL KY D VR +S+ D +S LCGGTHV TG+I I+SE Sbjct: 644 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 703 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+I AG+RR+EAI G+ E L +A V++ ++ +++ I EE L+ Sbjct: 704 SAIAAGVRRVEAIAGKHVIKQARRNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 763 Query: 774 HAKRK---LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K L L +D+ I + + I + D + ++ + K I++ +++++ Sbjct: 764 LHQLKYNQLILCEKDIQNIADDIGTIKLVYKNIEDYDLQIVRKAVSNTTKNIKNLVMVVI 823 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + +KK +++I V++++ ++ A +L + L GG GGG +AQ G Sbjct: 824 S-NNDKKNTIIIGVSDNITNKIQANNLVKEIINYL-GGSGGGSATLAQIG 871 >gi|262283148|ref|ZP_06060915.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] gi|262261400|gb|EEY80099.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] Length = 872 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 327/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP + Sbjct: 4 MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRIEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 356 VKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + S + AIV VE G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + T +KA H + L L ID R + NH Sbjct: 508 ADHGQILDATGNVVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHCVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE VN+ I + + Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI L Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + K+ +++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKKVKGHRYIASQVSVSDAGALRTFADNWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K ++ +D +A +L + A ++ G GGG+P MA +GG N Sbjct: 803 SDVLVLVAAIGDKVNVLVASKAKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857 Query: 882 GNKADQAIAGVASFL 896 K + + VA L Sbjct: 858 QAKIQELLDAVAGKL 872 >gi|322385851|ref|ZP_08059494.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100] gi|321270136|gb|EFX53053.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100] Length = 872 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 327/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L K ++ G FKLYDT+G P+++ ++I Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKKKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + S + AIV VE G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + +KA H + L L ID R ++ NH Sbjct: 508 ADHGQILDAAGNVVAKVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRLRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ILGSH +Q GS + LRFD TH + +T EL++IE VN+ I + + Sbjct: 568 TATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI L Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+TG+ A Q++ LK++A+ LKV Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKVPQLKEVPHKVEGLQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + ++ +++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K ++ T+D +A +L + A ++ G GGG+P MA +GG N Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857 Query: 882 GNKADQAIAGVASFL 896 K + + VA L Sbjct: 858 QAKIQELLDAVAGKL 872 >gi|313897393|ref|ZP_07830936.1| alanine--tRNA ligase [Clostridium sp. HGF2] gi|312957763|gb|EFR39388.1| alanine--tRNA ligase [Clostridium sp. HGF2] Length = 875 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 330/916 (36%), Positives = 498/916 (54%), Gaps = 62/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IR FL++F+ GH + P +SL+P NDPTL++ N+G+ K F G EKP Sbjct: 1 MKQLTGSQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAISFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +LY++VY +D +A+++W ++ + I++ T+DNFW + E GP GP SEIF Sbjct: 117 WIGFPKEKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 +D+GE E +RYIE+WN+VF QF+ + + ++ LP+ +IDTGM Sbjct: 174 YDRGEAYDPEGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKDYKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIA 287 GLER+ ++Q N+D DLF +I A+E T +Y + + + RVI DH+R+ SF +A Sbjct: 234 GLERLVALVQGGETNFDTDLFLPIIHATEAYTDARYADAQHKMAFRVIADHIRTVSFALA 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG L +NEGRGYVLRR++RRA+ +A+ L M L+P + M YP + + I Sbjct: 294 DGALFSNEGRGYVLRRVLRRAVRFAKKLNIQGAFMYKLVPVVYDIMKDFYPYMEEKLDYI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF TL G LL V+ + +++G AFKLYDT+G PL++ +I Sbjct: 354 ARLVKAEEERFHATLADGERLLLQVMEEKKESRVIDGKTAFKLYDTYGFPLELTVEIAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G +D F+ +++QR RARA S ++ I L E + FIGYD Sbjct: 414 SGYT-VDKDGFDAEMQQQRERARAARGDAESMGSQSI--DLMEFTQESSFIGYD------ 464 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S+ V A+ Q G V+ + +VVFD T FYAE+GGQ Sbjct: 465 -----------------VRHTSAKVIALFQDGVKVDAIS--DEGDVVFDTTVFYAESGGQ 505 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G +G++ + K + H I++ G LR ++ L +D + R ++ NH Sbjct: 506 VGDSGTICAEGVQAVVDTTIKAPHKQHLSHVIIKEGELRVGDAVELQVDEKKRDIITSNH 565 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THLL AL I+GSH+ Q GS ++ + LRFD TH + + +LK IE VN I + Sbjct: 566 SCTHLLQSALKQIVGSHIQQAGSFVSEEYLRFDFTHFEKVNEEQLKEIERLVNRYIGGHY 625 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V M E+A SGA AL KY D VRVVS+ G S CGG HV++T EI + Sbjct: 626 AVSKVEMPIEEAKKSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGV 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766 I+SE SI +GIRRI A TG A + +D+ L ++AS LK+ V +V + EE Sbjct: 681 CKIISEESIGSGIRRITAKTGYDAYAEFAKEDDTLHAVASDLKLKGISKVEEKVASVLEE 740 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +L+ A + + S ++ + + D+K +K ++ ++ + + Sbjct: 741 NVQLKKELAALQASMFALKASDLVNHMQELNGRQVLIERMDGADAKAMKDIVSNIRSQRE 800 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + ++ L + + K + + + + DL R +A ++ G GGGRP MAQSGG Sbjct: 801 NCVVFLASVHGD-KVTFVAGADKAAVSGGIKCGDLVREAA-LVCDGKGGGRPDMAQSGGK 858 Query: 881 NGNKADQAIAGVASFL 896 + +K ++A+ + + L Sbjct: 859 DASKVEEALHLIKNML 874 >gi|88802166|ref|ZP_01117694.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P] gi|88782824|gb|EAR14001.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P] Length = 872 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 329/919 (35%), Positives = 479/919 (52%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR TFL FF++ H ++PS+ ++ +DPTLMF NSGM PFK F G P + Sbjct: 1 MKSQDIRATFLNFFKEKSHLIVPSAPMVTKDDPTLMFINSGMAPFKEYFLGNAIPKNNRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D Sbjct: 61 SDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D EA+ LWKK + D+I++ DNFW M GPCGPC Sbjct: 121 KDILYVTVFEGTEDADALEMDTEAYDLWKK--HIPEDRILKGNKKDNFWEMGAQGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + + + +EIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDIRSAEEKEKVDAKTLINGDHPHVVEIWNLVFMQFNRKADGSLEDLPNKHIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ VLQ +NYD D+FK +I +T KY + RVI DHLR+ +F I Sbjct: 239 GFERLCMVLQNVQSNYDTDIFKPIISEIGTITNTKYGSNQQQDIATRVISDHLRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG+A+PELI K Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLDKKEPFIYKLVDVLSKKMGTAFPELIDQKQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE +R E+ F KTLD+GL+LLD ++S EI +G+ F+LYDT G P+D+ IL Sbjct: 359 LIENVIREEEASFLKTLDKGLLLLDVLISSTDSKEI-SGEKVFELYDTFGFPVDLTALIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G +D F + L++Q+ R+RA S + + W L E A +F+GYD L+ Sbjct: 418 AEKGYT-LDEKGFQEELQKQKKRSRAA-----SESATEDWTVLVEDAVA-EFVGYDTLKT 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + RK V G+ ++VF+ TPFY E G Sbjct: 471 SVKITRYRK---------------------------VTSVKDGEMYQLVFNLTPFYPEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + KK + +H + + ++ + R + + Sbjct: 504 GQVGDKGSLEDIHGNVVYILDTKKENNVIIH--FTKNLPKHILEGFIAVVEEKQRYRTAC 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+HV+Q GS + LRFD +H +T+ EL +E+ VN I+ Sbjct: 562 NHTATHLLHQALRKVLGTHVTQKGSAVHSKYLRFDFSHFSKLTTDELFEVENFVNARISG 621 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 LP+ R + +DAI GA AL G KY D VR + S LCGGTHV +T + Sbjct: 622 KLPLEEQRNVPMQDAIDQGAMALFGEKYGDTVRAIKFGA------SVELCGGTHVKNTSD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + I SE + +GIRRIEAIT + ++ L + L + V ++ Sbjct: 676 LWHFKIKSEVGVASGIRRIEAITNDAVKDFYAKNNKILSEIKETLN-NTKEPTKAVLKLQ 734 Query: 765 EEYRKLQLIHAKR---KLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKK 819 EE LQ + K Q +L I V+F++ + ++D+ +K++ L K Sbjct: 735 EENNFLQKQIEQLLREKAQHLSGELKSQLIDMNGVSFLAAKV-DLDANGIKNLAFDLGKD 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + ++ + KA + ++++L + ++A + R K++ GGG GG+ A + Sbjct: 794 ATNLFLLFANAPSKDKAMLTCYISKELANERGYDAGKVVRELGKLIHGGG-GGQNFFATA 852 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N +A+ ++ Sbjct: 853 GGKNPGGISKALEKAKEYV 871 >gi|284991581|ref|YP_003410135.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160] gi|284064826|gb|ADB75764.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160] Length = 897 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 314/920 (34%), Positives = 477/920 (51%), Gaps = 54/920 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FLE F GH ++PS+SL+ DP+L+FT +GMVPF TG+E Y Sbjct: 1 MQTAEIRRRFLEHFASRGHTVVPSASLVSP-DPSLLFTVAGMVPFIPYLTGREPAPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+L+T Sbjct: 60 TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAIQHAWELVTGSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D R+++TVY +D+EA + W +I+GL ++I R+ DN+W + GP GPCSEI+ Sbjct: 116 GLGFDPERIWVTVYLDDDEAAEAWHRIAGLPVERIQRLGKKDNYWHTGQPGPGGPCSEIY 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMG 229 +D+G P G P G+R++EIWNLVFMQ+E +++ + LPK +IDTGMG Sbjct: 176 YDRGPQFGPDGGPLVDTAGDRFLEIWNLVFMQYELTDVRSKEDFRIVGELPKKNIDTGMG 235 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 LER+A +LQ N Y+ID ++ + ++ G+ Y + ++ V RV+ DH+RS LI Sbjct: 236 LERVAYLLQGVDNLYEIDEVAPVLHRAAEIAGVTYGAKHDDDVRLRVVADHVRSGLMLIG 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGY+LRR++RRA+ +LLG E + LLP M ++YPEL I Sbjct: 296 DGVTPGNEGRGYILRRLLRRAVRSMKLLGVDEATLPALLPVSRDAMKASYPELETDFARI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405 +E+E F +TL G L D + L+GD AF L+DT+G P+D+ ++ Sbjct: 356 SSVAYAEEEAFRRTLSSGTALFDTAVREARAAGTASLSGDQAFSLHDTYGFPIDVTLEMA 415 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLR 464 +G+ +D F +++QR RARA + +G+ + + + L +G T + YD LR Sbjct: 416 AEQGVT-VDEEGFRALMQQQRDRARADARAKRTGSVDVLAYRRLLADHGPTDWRAYDTLR 474 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + L + T A G+ VV D+TPFYAE+ Sbjct: 475 TDSRVLGLVSELAAEEGPTSTP------------------AGPGEITRVVLDRTPFYAES 516 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G DG R ++ DVQ+ +G+ H V G LR L +D + R Sbjct: 517 GGQVADAGVLTWDGGRAEVLDVQRPVKGLVAHQVRVLEGELREGAELTAEVDREWRLSAC 576 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH++H AL +LG Q+GS P LR D +++ + IED N + Sbjct: 577 QAHSGTHVVHAALRQVLGPQALQSGSYNRPGYLRLDFAWQGALSAQQRHDIEDVANAAVR 636 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V M +A A GA AL G Y ++VRVV + GG S LCGGTHV + + Sbjct: 637 ADHRVSATYMTLPEAQAFGALALFGETYGEQVRVVEI----GGPWSRELCGGTHVQGSAQ 692 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L + ESS+ +G RR+EA+ G +L + + ++ L LK ++V RV + Sbjct: 693 IGTLALTGESSVGSGSRRVEAVVGLEGFRYLARERDLVRQLGELLKTPTDDLVERVSGML 752 Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 R + A+ + Q + V ++ + + +L+++ ++ + Sbjct: 753 ARLRDVDKELAELRAQQTLAAAGELAAGARDVGGVAVVTGAPTGLAGGDLRTLALDVRGR 812 Query: 820 IQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + ++L+ K +++ + R A D+ R +A + GG GGG+P +AQ Sbjct: 813 LSADRPAVVLLASESGGKVALVTALNPAAQARGLTASDVLRAAAAPV-GGRGGGKPDVAQ 871 Query: 877 SGGPNGNKADQAIAGVASFL 896 GG + A+ + Sbjct: 872 GGGTDPAGIPAALQAGEQAV 891 >gi|46199782|ref|YP_005449.1| alanyl-tRNA synthetase [Thermus thermophilus HB27] gi|48428512|sp|P61707|SYA_THET2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46197409|gb|AAS81822.1| alanyl-tRNA synthetase [Thermus thermophilus HB27] Length = 882 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 353/912 (38%), Positives = 510/912 (55%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57 + IR FL FF+ GH LPS SLIP +DP+L+FT++GM P K F G + Sbjct: 1 MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ VTT Q+C+R G D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172 LD RL++TV+++D+EA+++W+ + G+ ++I R ++N+W GP GPC Sbjct: 117 LRLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQ----NKQERFILPKMSIDT 226 SEIF+D+G G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +IQ +++G YEG V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG +N GRGYV+RR++RRA+ + LLG ++P + L P + +G YPE+ + Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464 RG G+D F +A+EEQ+SR+RA ++ L + GAT+F+GY+ L Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V A++ + + EA G +V+VV D+TPFYAE Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G G R ++ +K GIF+H A VE G+LR + +D RR Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ +E VN I Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703 + PV R M E+A GA AL G KY + VRVV VE G+ S LCGG HV TG Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E++ Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 E ++ + K +L L S + + + + +D+K L+ D L Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + ++L G K S + A L R A+ GG G GG+ +AQ Sbjct: 812 ARGADVALVLSGGQAVLKLS-----PKAQGMGLEAGALFRALAEKAGGRG-GGKGALAQG 865 Query: 878 GGPNGNKADQAI 889 GG + KA +A+ Sbjct: 866 GGLDPRKAREAL 877 >gi|312867236|ref|ZP_07727446.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405] gi|311097365|gb|EFQ55599.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405] Length = 872 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 323/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL+ G ++ L ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESSF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + + +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNVIKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|320449491|ref|YP_004201587.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01] gi|320149660|gb|ADW21038.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01] Length = 882 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 354/912 (38%), Positives = 497/912 (54%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57 + IR +L FF+ GH LPS SLIP NDP+L+FT++GM P K F G + Sbjct: 1 MRTAEIREKYLSFFEGKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGAKPIFGGKE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 ++ +TT QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK+ AI AW+ LT Sbjct: 61 WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTDP 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGPCG 170 K LD RL++TVY++D+EA+ +W+ + G+ +KI R ++N+W GP G Sbjct: 117 KWLGLDPDRLWVTVYEDDDEAYAIWRDLVGVPEEKIGRFGEDENYWPGGAITHGPNGPSG 176 Query: 171 PCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNK----QERFILPKMSI 224 PCSEIF+D+G G+R++EIWNLVF Q+++Q LP+ +I Sbjct: 177 PCSEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNI 236 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284 DTGMGL R+A +LQ+ + Y D F +I+ +G YEG V+HRVI DH+R+ Sbjct: 237 DTGMGLYRVAAILQDVEDFYRTDTFYPIIERVALFSGKPYEGTASVSHRVIADHIRAVVA 296 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 +ADG+ +N GRGYV+RR++RRA+ + LLG EP + L P + +G YPE+ + Sbjct: 297 ALADGVTFSNTGRGYVIRRLLRRALRHGYLLGLQEPFLHRLAPVVAELLGDFYPEMRENL 356 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 PAVEKQIRLEEERFLETLEGGLKRLDTLLSGLRPGEVLPGAEAFRLYDTYGFPLDLTVEI 416 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDL 462 RG G+D F +A+EEQ+ R+RA + ++ L + GAT+F+GY Sbjct: 417 AAERGF-GVDTEGFKRAMEEQQERSRAAMAFEREIFKKSAQVLEELYAERGATEFLGYGT 475 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L V A++ + +EEA G +V+VV D+TPFYA Sbjct: 476 LE-----------------------AEGTVLALLAGDQSLEEAGPGTEVQVVLDRTPFYA 512 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G R ++ K GIF+H A VE G LR + +D R Sbjct: 513 EGGGQIGDFGHLEWPSGRARVETTLKTERGIFLHRAKVEEGTLRVGERVRAVVDPARR-D 571 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 +H+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+T EL+ IE VN Sbjct: 572 TERHHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLTQEELERIELLVNRW 631 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSS 701 I + PV R + E+A GA AL G KY + VRVV VE GV S LCGGTHV Sbjct: 632 ILADFPVTWRYLPLEEAKREGAMALFGEKYGEVVRVVRVEGSPLPGVESKELCGGTHVRR 691 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TGEI I E ++ AG+RR+EA+ G+ A G ++++LA L V + N+ R+E Sbjct: 692 TGEIGAFLIQKEEAVSAGVRRLEAVAGEWAVRFARGALNRMRALAERLSVGEANLEERLE 751 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQ 817 + +E + + K +L +L + + + +S VD L+ D L Sbjct: 752 RLLQELKAKEKEVESLKARLVQAELKKEVALSEKGGLRYGVLELSGVDMAALRQAADDLV 811 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K ++L G K S + A L R A+ GG G GG+ +AQ Sbjct: 812 AKGADVALVLSGGQAVLKLS-----PKAQERGLEAGALFRALAERAGGRG-GGKGALAQG 865 Query: 878 GGPNGNKADQAI 889 G + KA A+ Sbjct: 866 AGLSPEKARAAL 877 >gi|157150203|ref|YP_001450848.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] gi|205830220|sp|A8AYI8|SYA_STRGC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157074997|gb|ABV09680.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] Length = 872 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 487/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++R A + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRGASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G FKLYDT+G P+++ ++I Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 416 GMT-VDREGFEVAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + S + AIV + VE G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYNASQLPSKLVAIVAENAEVEAVSEG-TASLIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + +KA H + L L ID R ++ NH Sbjct: 508 ADHGQILDATGNLVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I + + Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI L Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + ++ ++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIVSQVSVSDAGALRTFADNWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K +++ T+D +A +L + A ++ G GGG+P MA +GG N Sbjct: 803 SDVLVLVAAIGDKVNALVASKTKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857 Query: 882 GNKADQAIAGVASFL 896 K + + VA L Sbjct: 858 QAKIQELLEAVAGKL 872 >gi|167749584|ref|ZP_02421711.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702] gi|167657438|gb|EDS01568.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702] Length = 878 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 331/912 (36%), Positives = 498/912 (54%), Gaps = 53/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ +R ++L+FF+ GH + S+ L+P D +++ N+GM P K F G E+P Sbjct: 1 MKWTGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VTT QKC+R D+DNVG+T RH T+FEMLGNFSFG YFK A AW+ LTK Sbjct: 61 HRVTTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + RL++T+Y+ED+EA +W G+ D+II++ DNFW +GPCGPCSEI FD Sbjct: 117 EIPEDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFD 175 Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +GE P + E +R IEIWNLVF QF+ K L +IDTGMGLER+A V+ Sbjct: 176 RGEKYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVM 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N +++D +++++ V G+ Y V+ RVI DH+RS++F++ DGI P+NE Sbjct: 236 QDVDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + R+LG P + + + E +AYPEL + + I++ +++E+ Sbjct: 296 GRGYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E F KT+D+G+ +L + L + IL+G+ FKL+DT+G P+D+ ++IL + Sbjct: 356 ESFAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKN-I 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 GID F + + EQ+++AR++ G G E +L T F+GY L Sbjct: 415 GIDEERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + A+++ GE+ + G +V VV D TPFYAE+GGQ+GD Sbjct: 464 ---------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDC 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +Q+ D +K G F+ + VE G T+ S+ +D + R + NH+ H Sbjct: 509 GTITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG HV Q GS + P RFD +H +T EL+ IE VND I +PVVT Sbjct: 569 LLQAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A GA AL G KY D VRVV G S+ CGGTH+ +T + L I+ Sbjct: 629 EELPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKL 770 SE+S+ +G+RRIEA+TG S + ++A LK + V+ + E + E + Sbjct: 684 SETSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPTAVMQKCENMMNEMHAM 743 Query: 771 QLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + Q+ ++ + S ++S V L+ D L+ S I Sbjct: 744 QAEIDRLNGIISMSQMKNVTEGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+S K + I E + NA + + A + GG G GG+P A +G + K Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKEIAAIAGGKG-GGKPDTAMAGIADVTKI 862 Query: 886 DQAIAGVASFLK 897 D+A+ + +K Sbjct: 863 DEALLALTDIVK 874 >gi|118469604|ref|YP_887342.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] gi|205830154|sp|A0QWQ4|SYA_MYCS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118170891|gb|ABK71787.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] Length = 896 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 316/912 (34%), Positives = 468/912 (51%), Gaps = 68/912 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P + Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWNRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWTLLTNPVEEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL+ TVY +D+EA LW++++GL A++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGFDPERLWATVYLDDDEAIGLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G + E RYIEIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPEYGVEGGPEANED-RYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL + +I V Y ++ V +R+I DH R+++ +IA Sbjct: 235 ERVACLLQGVDNVYETDLLRPVIDKVAAVAPRGYGAGNHDDDVRYRIIADHTRTAAIIIA 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGYVLRR++RR + A+LLG +P+M L+ + MG +YPEL+ I Sbjct: 295 DGVSPGNEGRGYVLRRLLRRIIRAAKLLGVEQPVMGDLIATVRDAMGPSYPELVTDFERI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L + + +L+G AF L+DT+G P+D+ ++ Sbjct: 355 NRIAVAEETAFNRTLASGSKLFEDAARATKKSGATVLSGSDAFTLHDTYGFPIDLTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL+ +D F + EQR RA+A + T+ + G T+F G+D L Sbjct: 415 AEAGLS-VDQEGFRTLMAEQRQRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDELTS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEVVFDQTPFY 521 + + I G+ V +VE++ D+TPFY Sbjct: 474 -----------------------EATILGIFVDGKRVPVVSHDGLEADRVELILDRTPFY 510 Query: 522 AEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 AEAGGQ+ D G G R +TDVQK A ++ H VE G ++ +D Sbjct: 511 AEAGGQIADEGTISGTGASGTARAAVTDVQKIARTLWAHRVNVESGEFVEGDTVTAAVDP 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + RR + HS TH++H AL +LG + Q GS P LRFD P++ + IE+ Sbjct: 571 KWRRGATQGHSGTHMVHAALREVLGPNAVQAGSLNRPGYLRFDFNWQGPLSDDQRTQIEE 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N + + V T + E A A GA A+ G +Y D+VRVV + GG S LCGGT Sbjct: 631 VTNQAVEADYEVHTFVTELEKAKAMGAMAMFGERYPDQVRVVEI----GGPFSLELCGGT 686 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV ++ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V Sbjct: 687 HVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVP 746 Query: 758 GRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKS 811 RV + E + + + +L + V ++ +S + + +L+S Sbjct: 747 ARVANLVERLKAAEKELDRMRLANARAAAVNAVAGAETVGKVRLVAQRMSGGMSANDLRS 806 Query: 812 VMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868 ++ ++ K+ S ++ L+ + ++ V D A DL + A + G G Sbjct: 807 LVGDIRGKLGSEPAVVALIAEGENDAVPFVVAVNPAAQDLGLRANDLVKQFAAPVN-GRG 865 Query: 869 GGRPHMAQSGGP 880 GG+ +AQ G Sbjct: 866 GGKADLAQGSGK 877 >gi|15618801|ref|NP_225087.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae CWL029] gi|15836425|ref|NP_300949.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae J138] gi|16752144|ref|NP_445511.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39] gi|33242254|ref|NP_877195.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183] gi|6707750|sp|Q9Z714|SYA_CHLPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4377211|gb|AAD19030.1| Alanyl tRNA Synthetase [Chlamydophila pneumoniae CWL029] gi|7189887|gb|AAF38754.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39] gi|8979266|dbj|BAA99100.1| alanyl tRNA synthetase [Chlamydophila pneumoniae J138] gi|33236765|gb|AAP98852.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183] gi|269302680|gb|ACZ32780.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] Length = 872 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 335/888 (37%), Positives = 494/888 (55%), Gaps = 46/888 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++IR+ FL+F+ H +LPSS + P NDP+++FTN+GM FK+IF +EK Y Sbjct: 1 MLSNTIRSNFLKFYANRHHTILPSSPVFPHNDPSILFTNAGMNQFKDIFLNKEKVSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK AI AW++ F+ + Sbjct: 61 TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKAEAIAFAWEVSLSVFNFN 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW + L D+I R+T DNFWSMA TGPCG CSE+ FD+G Sbjct: 121 PEGIYATVHEKDDEAFALW--EAYLPTDRIFRLTDKDNFWSMANTGPCGYCSELLFDRGP 178 Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + ++ LP +DTG GLER+ +++ Sbjct: 179 SFGNASSPLDDTDGERFLEYWNLVFMEFNRTSEGSLLALPNKHVDTGAGLERLVSLIAGT 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 ++ D+ + LI +EQ++G Y ++ RVI DH+RS SF IADG+LP N RGY Sbjct: 239 HTVFEADVLRELIAKTEQLSGKVYHPDDSGAAFRVIADHVRSLSFAIADGLLPGNTERGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLR+I+RR++ Y R LG+ P + ++P+L MG AYPEL + I++ L E+E F Sbjct: 299 VLRKILRRSVNYGRRLGFRNPFLAEIVPSLADAMGEAYPELKNSLSQIQKVLTLEEESFF 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRG LL VL ++G+ AFKL DT+G+P+D + + + +D+ +F+ Sbjct: 359 KTLDRGGNLLQQVLKSSSSSSCISGEDAFKLKDTYGMPIDEISLLAKDYDYS-VDMDTFH 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +E + R+R + + GT+E I+ L + ++FIGYD L F Sbjct: 418 KLEQEAKERSRKNVV-QSQGTSESIYNEL---HLTSEFIGYDHLSCDTF----------- 462 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++AI+ + IV Q+ +V +PFYAE GGQ+GD+G Sbjct: 463 ------------IEAIISKDHIVSSLQEKQEGAIVLKVSPFYAEKGGQVGDSGEIFCSEG 510 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +T G+ VHH + +G L E ++ ++ R++++ NH+A HLLH AL Sbjct: 511 TFIVTHTTSPKAGLIVHHGRISQGSLTVEAAVTAQVNRYRRKRIANNHTACHLLHKALEI 570 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG H+ Q GS + +R D TH + I+ +L IE VN+ I +N PV R D Sbjct: 571 TLGDHIRQAGSYVDDTKIRLDFTHPQAISPEDLLCIETLVNESIRENEPVDIREALYSDV 630 Query: 660 IASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 + S G KY+D VRVVS HS LCGGTH +TG+I I E ++ Sbjct: 631 MNSSEIKQFFGDKYSDVVRVVSAG------HSHELCGGTHAEATGDIGFFRITKEHAVAM 684 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA+TG++A + + Q E L+ +A+ L+V + +V R+ +E ++ + + Sbjct: 685 GIRRIEAVTGEKAEATVHQQSEVLEEIATLLQVPRDQIVSRLTATLDERKQQDKRLNELE 744 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L L +CH+ + + H ++E ++ L+ L ++I +I L K Sbjct: 745 NSLIQTKLDKLIHNCHQRQGITCLVHHLAEHENHRLQQYAQCLHQRIPEKLISLWTTEKN 804 Query: 834 KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 K VL V++DL +A DL + GG GG+ AQ P Sbjct: 805 GKYIVLSRVSDDLITQGVHAQDLLKAVLTPC-GGRWGGKDQSAQGSAP 851 >gi|297195516|ref|ZP_06912914.1| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486] gi|297152826|gb|EDY66040.2| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486] Length = 854 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 315/889 (35%), Positives = 480/889 (53%), Gaps = 61/889 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP V Sbjct: 1 MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT Sbjct: 60 TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L+ +L+ITVY ED+EA ++W+ + G+ A++I R+ NFWSM GPCGPCSEI Sbjct: 116 GYGLEPEKLWITVYQEDDEAEQIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEIN 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + ERY+EIWNLVFMQ+E+ + + P +IDTG+GL Sbjct: 176 YDRGPEF-GEEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ D + ++ + ++TG++Y + + V+ RV+ DH+R+S+ LI D Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHGSDVSLRVVADHIRTSTMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPELI + IE Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVKDLVDVVIDTMGLQYPELITDRKRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F K L G +LD + + +L GD AF L+DT G P+D+ ++ Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAKGGTVLPGDKAFLLHDTWGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + ++EQR RA+A + +G + + + G T+F GY G Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHANLSAYREIADSSGNTEFTGYTSTEG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V ++ G A G +VEVV D+TPFYAE G Sbjct: 474 -----------------------ESTVVGLLVDGVSSPAASEGDEVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G +Q+ DVQ+ G+ VH +V+ G + S ID + RR ++ Sbjct: 511 GQLADQGRIKLHSGAVIQVRDVQQPVPGVSVHKGVVQVGEVTVGASAYAVIDVRRRRAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL H AL LG +Q GS +P RFD + L +E +N+++A Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINEVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T + Sbjct: 631 RELDVHAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ ESSI +G+RR+EA+ G A + L + + L +K + ++ + Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRSEELPEKIAAML 745 Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + + + K + + + V ++ + + +L+ ++ ++ Sbjct: 746 GKLKDAEKEIEKFRAEKVLGAAAGLAQGAKDVRGVALVTGTVPDGTSADDLRKLVLDVRG 805 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864 +I ++ + + + +V+ A DL R +AK LG Sbjct: 806 RIPGDRPAVVAVFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLG 854 >gi|303236524|ref|ZP_07323109.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN] gi|302483272|gb|EFL46282.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN] Length = 897 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 320/935 (34%), Positives = 483/935 (51%), Gaps = 88/935 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 12 MMTANEIRDSFKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 71 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L + L Sbjct: 72 RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKENAIDYAWEYLVEVLKL 131 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W K L D II +DNFW M ETGPCGPC Sbjct: 132 DPKDLYVTVFEGSPEEGIARDDEAASYWAK--HLPEDHIINGNKHDNFWEMGETGPCGPC 189 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + G +++ + IEIWN+VFMQF++++ L IDTGM Sbjct: 190 SEIHVDSRSAEEKAKVPGRELVNKDDPQVIEIWNIVFMQFQRKSDGTLEPLAMNVIDTGM 249 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273 G ER+ +LQ K +NYD D+F+ I+ E+++G KY + R Sbjct: 250 GFERLVRMLQGKNSNYDTDIFQPTIKEIERLSGKKYGFTTPSGKEGEGKTEQEKIDIAMR 309 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332 V+ DH+R+ +F IAD LP N GYV+RRI+RRA+ YA L E + LL E Sbjct: 310 VVADHMRAVAFSIADSQLPGNAKAGYVIRRILRRAVRYAYTFLEQKEAFIYKLLNTFIHE 369 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKL 390 MG+AYPEL + LI ++ E++ F +TL++G+ LL + + L+G AF+L Sbjct: 370 MGNAYPELPAQRELIARVIKEEEDSFLRTLEKGINLLTNAMDEMKAQGKTELDGKEAFRL 429 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + I G +D F + +Q++RAR ++ W LKE Sbjct: 430 FDTYGFPLDLTELICRENGFT-VDEKQFEAEMAQQKARARNAAV-----VENGDWVVLKE 483 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G +F+GYD + RKV +K Sbjct: 484 --GEQEFVGYDYTEYECHILRYRKVTQKKNTF---------------------------- 513 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + + I D +++ + E Sbjct: 514 FEIVLDHTPFYGEMGGQVGDQGVLVSEDETIDIIDTKRENNQSIHIVKQM---PKNVEAD 570 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D R + NH+ATHLL +AL +LG H Q GS ++ D LRFD +H + +T Sbjct: 571 FMACVDTDKRDASAANHTATHLLDYALKQVLGDHCEQKGSYVSADTLRFDFSHFQKVTDE 630 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VND+I Q+L R E+A GA AL G KY D+VRV+S Sbjct: 631 ELRQVERMVNDMIRQDLKCDEHRNTPLEEAKKMGAVALFGEKYGDKVRVISFGP------ 684 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S CGG H +STG I IV+ESS+ AGIRRIEA+TG++ + ++ ++ L + Sbjct: 685 SCEFCGGIHATSTGRIGFFKIVNESSVAAGIRRIEALTGEQCEEAVYELEDTMRDLKAMF 744 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEV 804 + ++ V + +E+ ++ + Q N S + V + ++ V Sbjct: 745 N-NAKDLKSVVAKYIQEHDAMKKEMESFRQQAVSRMANGLVESAETVNGVKVVKAVLP-V 802 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862 + K ++ +++ I ++ ++G + E K + I++++D++ NA + R +AK+ Sbjct: 803 EPASAKDIVFKVREAIPEKLVCVLGSTHENKPLLSIMLSDDMVKDHELNAGKIIREAAKL 862 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + GG GGG+PH AQ+GG + A+ V Sbjct: 863 IKGG-GGGQPHYAQAGGKDVEGVSAAVEKVIELAN 896 >gi|322375479|ref|ZP_08049992.1| alanine--tRNA ligase [Streptococcus sp. C300] gi|321279742|gb|EFX56782.1| alanine--tRNA ligase [Streptococcus sp. C300] Length = 872 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 324/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPADKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + + LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSDYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M + YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMENYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + + +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|322389170|ref|ZP_08062731.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903] gi|321144075|gb|EFX39492.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903] Length = 872 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 325/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPSVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G ++ L ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESSF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + + +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNVIKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|145348968|ref|XP_001418913.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|313471499|sp|A4S051|SYAP_OSTLU RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|144579143|gb|ABO97206.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 906 Score = 736 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 328/908 (36%), Positives = 472/908 (51%), Gaps = 53/908 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + ++IR FL+F++ GH +LPSSSL+P DPT++ T +GM+ FK +F GQ + ++ T Sbjct: 23 SGAAIRQRFLKFYETRGHAVLPSSSLVPE-DPTVLLTIAGMLQFKPVFMGQRERAHERAT 81 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVG T RHHTFFEMLGNFSFG YFK+ A Q AW+L T EF L+ Sbjct: 82 TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKDACQWAWELATGEFGLNP 137 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R++++V+ ED+EAF +W+ + G+ +I R+ DNFW+ TGPCGPCSE+++D Sbjct: 138 ERVWVSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYDFYPE 197 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G ++ R+IE +NLVFM+ + L +IDTGMGLERMA +LQ N Sbjct: 198 -RGLEGADLDDDSRFIEFYNLVFMELNRDADGGVTPLKNKNIDTGMGLERMAQILQGVPN 256 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I + + G+ Y N +VI DH R+ S++I+DG+ +N GRGY Sbjct: 257 NYETDLIMPIINKAASMAGIDYNACNDVQKQQLKVIGDHTRAVSYMISDGVFASNIGRGY 316 Query: 300 VLRRIMRRAMCYARLLGYTEP-----LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 ++RR++RR + RLLG + + P++ + I L E Sbjct: 317 IVRRLLRRVVRNGRLLGIKPEEGASAFTPAIAEVAISMSEGCDPQVAKNSARILAELERE 376 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 + F KTL RG +L ++ K + L+G AF LYDT+G PLDI D+ G+ + Sbjct: 377 ELSFQKTLGRGEEMLAELIETAKKTKTGLSGKDAFTLYDTYGFPLDITADVATEAGIT-V 435 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A+ EQRS ++A + + E + FIGY+ Sbjct: 436 DLEGFESAMAEQRSMSQAAHQTVDVTAGNALARVADELGAKSTFIGYESTSSDV------ 489 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V AIV GE VEEA G KV++V D TPFYAE+GGQ+GD G Sbjct: 490 ----------------SNVLAIVCGGESVEEAPEGAKVDIVLDVTPFYAESGGQVGDNGV 533 Query: 534 AIGDGIRLQITDVQKK--AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 +K I VH A V +G ++ + +D +RR+ NH+ATH Sbjct: 534 LHTADGATLEVSDVQKAGGGRIIVHTATVTKGSIKKGSQVTANVDENSRRRAKSNHTATH 593 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG VSQ GS D LRFD K T A+L +E+ VN I+Q+ + Sbjct: 594 LLQSALKKVLGEDVSQAGSLCGFDRLRFDFNSPKAPTEAQLLEVENLVNGWISQSAALTA 653 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M A GA + G KY D VRVV V S LCGGTHVS+T EI I+ Sbjct: 654 EEMPIAAAKDKGATMMFGEKYGDVVRVVDVPG-----ISMELCGGTHVSNTAEIGGFKIL 708 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ I +GIRRIEA+ G L +D +K LAS L+V + GRV + E+ R Q Sbjct: 709 SEAGIASGIRRIEAVAGAGVVELLQQRDAVVKQLASALRVPPEEITGRVSSLQEDLRATQ 768 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L V ++ + + + VD LK + L ++ G + Sbjct: 769 KLAESLRGELAVAKAGALVSQAREVGEAKVLVARLDGVDPAALKVAAENLAAQLGDGAAI 828 Query: 827 LVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++G + ++ + + + A + +AK GGGG GG+P AQ+GG + + Sbjct: 829 VLGSANGANVGLVALFDDKVQKDGGLKAGQVLGAAAKKCGGGG-GGKPGFAQAGGRDATQ 887 Query: 885 ADQAIAGV 892 D A+ Sbjct: 888 LDAALDEA 895 >gi|15609692|ref|NP_217071.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv] gi|15842093|ref|NP_337130.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] gi|148662394|ref|YP_001283917.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148823751|ref|YP_001288505.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis F11] gi|167968834|ref|ZP_02551111.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|215404504|ref|ZP_03416685.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|215427951|ref|ZP_03425870.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T92] gi|215431513|ref|ZP_03429432.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis EAS054] gi|253798364|ref|YP_003031365.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435] gi|289553655|ref|ZP_06442865.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605] gi|289746347|ref|ZP_06505725.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|289751174|ref|ZP_06510552.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92] gi|289754673|ref|ZP_06514051.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054] gi|294994334|ref|ZP_06800025.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 210] gi|297635166|ref|ZP_06952946.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207] gi|297732158|ref|ZP_06961276.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506] gi|306776829|ref|ZP_07415166.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001] gi|306780594|ref|ZP_07418931.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002] gi|306785357|ref|ZP_07423679.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003] gi|306789957|ref|ZP_07428279.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004] gi|306794037|ref|ZP_07432339.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005] gi|306798436|ref|ZP_07436738.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006] gi|306804315|ref|ZP_07440983.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008] gi|306807646|ref|ZP_07444314.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007] gi|306969847|ref|ZP_07482508.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009] gi|306972944|ref|ZP_07485605.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010] gi|307080655|ref|ZP_07489825.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011] gi|307085242|ref|ZP_07494355.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012] gi|313659492|ref|ZP_07816372.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475] gi|3122879|sp|O07438|SYA_MYCTU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830157|sp|A5U5Q5|SYA_MYCTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|3261815|emb|CAB09762.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE) (ALANINE TRANSLASE) (ALARS) [Mycobacterium tuberculosis H37Rv] gi|13882374|gb|AAK46944.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] gi|148506546|gb|ABQ74355.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148722278|gb|ABR06903.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis F11] gi|253319867|gb|ACT24470.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435] gi|289438287|gb|EFD20780.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605] gi|289686875|gb|EFD54363.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|289691761|gb|EFD59190.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92] gi|289695260|gb|EFD62689.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054] gi|308214756|gb|EFO74155.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001] gi|308326528|gb|EFP15379.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002] gi|308329949|gb|EFP18800.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003] gi|308333566|gb|EFP22417.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004] gi|308337594|gb|EFP26445.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005] gi|308341259|gb|EFP30110.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006] gi|308345967|gb|EFP34818.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007] gi|308349066|gb|EFP37917.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008] gi|308352656|gb|EFP41507.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009] gi|308357634|gb|EFP46485.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010] gi|308361576|gb|EFP50427.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011] gi|308365196|gb|EFP54047.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012] gi|323718828|gb|EGB27984.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CDC1551A] gi|328458134|gb|AEB03557.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 4207] Length = 904 Score = 736 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 327/932 (35%), Positives = 482/932 (51%), Gaps = 72/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G E RY+E+WNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A VLQ+ N Y+ DL + +I +V Y + V +R+I DH R+++ LI Sbjct: 235 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L + V S +L+G AF L+DT+G P+++ ++ Sbjct: 355 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D I F + + EQR RA+A + + + GAT+F G+D LR Sbjct: 415 AETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQ 517 + + I G+ V A GQ+VE+V D+ Sbjct: 474 -----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDR 510 Query: 518 TPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 TP YAE+GGQ+ D G G + R +TDVQK A+ ++VH VE G +++ Sbjct: 511 TPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D RR + HS TH++H AL +LG + Q GS P LRFD P+T + Sbjct: 571 AVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRT 630 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 +E+ N+ + + V T + A A GA AL G Y D VRVV + GG S L Sbjct: 631 QVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLEL 686 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHVS+T +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV Sbjct: 687 CGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPS 746 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSK 807 V RV + E R + + ++ +I +V ++ +S + + Sbjct: 747 EEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAA 806 Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 +L+S++ ++ K+ S ++ L+ + + + D A DL + A + Sbjct: 807 DLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE 866 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+ +AQ G N D A+ V S + Sbjct: 867 -GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897 >gi|254445806|ref|ZP_05059282.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235] gi|198260114|gb|EDY84422.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235] Length = 883 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 306/929 (32%), Positives = 456/929 (49%), Gaps = 90/929 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FL+FF H ++PS+SL+P + P L+FTN+GM F F G+ + + Sbjct: 1 MTSNQIRQSFLDFFASKQHAIVPSASLMP-DAPNLLFTNAGMNQFVPYFLGERESANPRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDL++VG HHTFFEMLGN+S G YFK+ AI+ AW+L+T+ + Sbjct: 60 TDTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSIGDYFKQEAIEWAWELITEVWKFP 119 Query: 122 QRRLYITVYDE--------DEEAFKLWK---KISGLSAD-KIIRITTNDNFWSMAETGPC 169 + RLY TVY D+EA+ WK + +GL II DNFW M +TGPC Sbjct: 120 KERLYATVYKPGEGDPATFDQEAYDFWKAIFEKAGLDPKVHIIYGNKKDNFWMMGDTGPC 179 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ D + + IEIWNLVF+QF + + L +DTGMG Sbjct: 180 GPCSELHIDLTPAGDTKGSLVNADSPYCIEIWNLVFIQFNATPEGDFVPLKNQHVDTGMG 239 Query: 230 LERMATVLQEK---------TNNYDIDLFKHLIQASEQVTGMKYEG-------------N 267 ER+A ++ +NY+ DLF L Q E+++G Y+ Sbjct: 240 FERVAGIMATSKNFTDFSTPPSNYNSDLFDTLFQEFEKLSGHTYQRTLPEDLENISEVEM 299 Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327 V RV+ DH+R S IADGILP NE R YVLRRI+RRA+ Y R LG L+P Sbjct: 300 KDVIFRVLADHIRCLSCSIADGILPGNESRNYVLRRILRRAVMYGRKLGLENGFFAQLVP 359 Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387 + ++G +PEL + +I++ ++SE++ FG+TLDRG+ L D + S + ++G A Sbjct: 360 IVVAQLGHVFPELKAQEEIIQKIIKSEEDAFGRTLDRGIQLFDKIASE---QDQISGLDA 416 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F LYDT+G P+D+ Q + R + +DI F +E++R ++ G+ + + Sbjct: 417 FTLYDTYGFPIDLTQLMARQRNMK-VDIAGFEAEMEKRRQQS-----KDGAKAAQILIAE 470 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 + T+F+G++ L + + K Sbjct: 471 RENDAEPTRFVGFNTLADEDELIDVVK-------------------------------GE 499 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 +VF+ +PFYAE GGQ+GDTG + + D K A G F+ H + Sbjct: 500 NNSSYLVFNHSPFYAEMGGQVGDTGSIEFEDRHFDVLDTIKDANGRFL-HKVSGDAENIL 558 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 L +D + RR + +HSATH+LH AL +LG+HV Q GS + LRFD H + I Sbjct: 559 GHHANLIVDVKRRRSIERHHSATHVLHWALRKVLGTHVHQAGSYVDDQRLRFDFAHFEAI 618 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 +L IE N+ + N V + A G KY D VRVV + Sbjct: 619 KPEQLALIEKLCNEQLLANNKVNWYETPFNEK-PKEVIAFFGDKYGDVVRVVDIGG---- 673 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S LCGGTHV +TGEI LL I SES I AG RRIEAI G SH+ + + S + Sbjct: 674 -FSIELCGGTHVRATGEIGLLKIASESGIAAGTRRIEAIVGDSLYSHINDMEATIASASK 732 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS 802 L + ++ +++ + +L+ + + + S + + ++ ++ Sbjct: 733 SLSTAPNELIKKIDIVLARNAELEKQLKSFQQKASGNLADDLLKSATETNGLKLVAAKVT 792 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAK 861 D L+ + L K+ G+++L K K SV+ +++ + A D+ R Sbjct: 793 ASDPNALRQLGATLIGKLGEGVVVLGAEVK-GKVSVVAFSSQEAVKAGHKAGDIIRDLTA 851 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 L G GGG+P A G N + + + Sbjct: 852 KL-DGRGGGKPDFAMGGATNVAELENTLK 879 >gi|319442138|ref|ZP_07991294.1| alanyl-tRNA synthetase [Corynebacterium variabile DSM 44702] Length = 911 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 323/939 (34%), Positives = 479/939 (51%), Gaps = 79/939 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F+ + K GH +PS+SLI +DP L+F N+GMVPFK F G++ P + Sbjct: 1 MQTHEIRERFINHYVKAGHAEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGEQNPPFPNG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISHAWSLLTDPVD 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD+ RL++TVY +D+EA ++W + G+ ++I R+ DN+WSM GPCGPCSE Sbjct: 116 EGGFGLDKDRLWVTVYLDDDEAAQIWHEKIGIPEERIQRLGMADNYWSMGVPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+GE G G + RYIE+WNLVFMQ E+ + + LPK +IDTGM Sbjct: 176 IYYDRGEEY-GEYGGPVVDDTRYIELWNLVFMQNERGKGIGKDDFEIVGPLPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNI 269 G+ER+A +LQ N Y+ DL +I+ +E +TG Y + Sbjct: 235 GVERVACILQGVENVYETDLLAPVIKVAEDLTGATYGRSEQLIKAGDTESADYHAAHTDD 294 Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329 + RVI DH R+ LI DG+ P NEGRGY+LRR++RR + ARLLG T M L+ + Sbjct: 295 IRFRVIADHCRTGLMLILDGVTPGNEGRGYILRRLLRRIIRSARLLGATGVTMEKLMDTV 354 Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVA 387 + M +YPE+ I E+ F KTL+ G L + V + + + L+GD A Sbjct: 355 RSTMTPSYPEIADNWERIRAVAVGEETAFLKTLESGTRLFETVAAQVKGSGLTELSGDAA 414 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F L+DTHG P+D+ ++ GL +D F+ + EQ++RA+A + + + Sbjct: 415 FSLHDTHGFPIDLTVEMAAESGLT-VDKEGFDARMAEQKARAKADNRAKKHDHADVAVYR 473 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 T F+GYD + IV G +VE A Sbjct: 474 PFVDNHPTVFLGYDSTE-----------------------AEGSILGIVAGGALVERAGE 510 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 GQKV+++ DQTPFYAEAGGQL D G G G + DVQK + +++H+ V G Sbjct: 511 GQKVQLILDQTPFYAEAGGQLADRGQITGTGGAATVDDVQKTGKKVWLHNVTVTGGEFAV 570 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + T+D+ R + HS TH++H AL +LG Q GS P LRFD + + + Sbjct: 571 GQRVTATVDHTWRHKARQAHSGTHMIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYGEQL 630 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 T+ +L+ IE N+ + + V T + ++A A GA AL G Y VRVV + GG Sbjct: 631 TADQLRRIELIANEAVDADYQVNTIETSLDEAKAMGAMALFGENYGAEVRVVEI----GG 686 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S LCGG HV + +I + ++ ESS+ +G+RRIEA +G + L Q + +LAS Sbjct: 687 PFSMELCGGIHVEHSSQIGPVAVLGESSVGSGVRRIEAYSGVDSFRFLSDQHKLSGALAS 746 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII- 801 L++ + RVE + + + A+ + L + D+ ++ + Sbjct: 747 QLRIPSEELPDRVEALTTRLNEAEKRIAQFRTAELSAKVGDYLLQATMVGDIRVVAARVP 806 Query: 802 SEVDSKELKSVMDALQKKIQS--GIIMLVGISKE-KKASVL-IVVTEDLLDRFNAVDLAR 857 + + +L+++ + + S G+I + E K + + A D+ + Sbjct: 807 DGIVAGDLRTLATEAKSRAGSDAGVIFFISSDPESGKVPFIAAATDAAVAAGVKAGDIIK 866 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A + GG GGG+P MAQ G + D A+ V + Sbjct: 867 TVAPYV-GGRGGGKPAMAQGSGSDAAGIDAAVKAVRDIV 904 >gi|148240734|ref|YP_001226121.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7803] gi|205830237|sp|A5GPF9|SYA_SYNPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|147849273|emb|CAK24824.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 7803] Length = 891 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 330/896 (36%), Positives = 494/896 (55%), Gaps = 56/896 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF++ GH+ +PS+SL+P DPT++ T +GM+PFK IF GQ++ T Sbjct: 16 TGAEIRDAFLAFFEERGHKRMPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T F LD Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVFGLDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ +D+EA ++W+++ G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 KNLVVSVFRDDDEAEQIWREVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ + + L +IDTGMGLERMA +LQ+ N Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQSNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ + G+ Y + + +VI DH R+ + LI+DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAAERAGVDYHQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P + + A M SA+P+L + + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLSERREVILAELQREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ K ++G+ AF+LYDT+G PL++ Q+I GL +D+ F Sbjct: 370 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTQEIAEEHGL-AVDLAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+QR RA+A ++ + + I + T+F GY+ L Sbjct: 427 TAMEQQRQRAKAAAVSIDLTLQDAID-QVAAGLQDTEFRGYEQLEQ-------------- 471 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 SS ++A+V GE + AV+G V+VV D TPFY E GGQ+GD G + D Sbjct: 472 ---------SSSIQALVVNGEPAQSAVAGDAVQVVLDVTPFYGEGGGQIGDRGTLVADGQ 522 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + + + +FVH V+RG L + +D RR+ NH+ATHLL Sbjct: 523 AGDGLIVMVESVSRNRSVFVHSGRVQRGALAVGDVVHGRVDRACRRRAQANHTATHLLQA 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL + + Q GS ++ D LRFD + +T+ EL+ IE +N IA + + M Sbjct: 583 ALKQEVDPGIGQAGSLVSFDRLRFDFHCPRAVTAEELERIESLINGWIADAHALEVQEMA 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A+GA A+ G KY D V D S LCGGTHV++T EI L IVSES Sbjct: 643 IEKAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSESG 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772 + AGIRRIEA+ G +L +D +K L K G ++ RV + +E + Sbjct: 698 VAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVTALQDELKATGKALA 757 Query: 773 --IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + D + + VD L+ +L ++ G +++G Sbjct: 758 AAQAELAVAKSAALATKAVAVGDFQLLVERLDGVDGTGLQGAAQSLADQLGDGAAVVLGG 817 Query: 831 SKE----KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K ++ + ++ A AK+ GGGG GGRP++AQ+GG + Sbjct: 818 LPDPADQGKVILVAAFGKAVIAQGQQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRD 872 >gi|189183879|ref|YP_001937664.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda] gi|205830168|sp|B3CST3|SYA_ORITI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|189180650|dbj|BAG40430.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 389/897 (43%), Positives = 533/897 (59%), Gaps = 40/897 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N++ IRTTF+EFF+K GH SSSL+P NDP+L F N+G+V FK+ E Y V Sbjct: 6 NINQIRTTFIEFFKKYGHHHASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG K +QL W+ LTKE +D Sbjct: 66 TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWNFLTKELFID 125 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL +TVY D E KLW+ I+GL +IIRI T+DNFWSM GPCGPC+EIF+D G+ Sbjct: 126 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 185 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGGLPG+ E G RY+EIWN+VFMQ+EQ N+ R L K IDTG GLER+ATVLQ Sbjct: 186 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 245 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLFK+LI E +T +K G +HR+I DHLR+S+FLIADG++P+N+GRGYV Sbjct: 246 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 305 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM LG EP+M L+ L EMG Y EL + LI L++E+E+F Sbjct: 306 LRRIMRRAMNQIHQLGCKEPVMHLLVQGLINEMGDFYKELRVRQELITYLLKNEEEKFKT 365 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL LL+ +L L+G +AFKLYDT+G P D+ QDIL R I+ F+Q Sbjct: 366 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRS-ISINKTEFDQ 424 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RAR G GS + +W LKE++ AT+F+GY Sbjct: 425 NMLEQQNRARQLWKGQGSNKEQLLWEKLKEEFRATEFVGY-------------------- 464 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534 IV +++Q + VE Q + ++ +QTPFY ++GGQ+GD G Sbjct: 465 ---SLCQAEGIVVSLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQIGDIGII 521 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + +TD K VH + G + + + ID Q R QL I+HSATH+LH Sbjct: 522 KNNECTIHVTDTIKLFGCTHVHICKIVSGKINLNAVVHMAIDKQYRTQLQIHHSATHILH 581 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG+H+ Q GS + D LRFDV+H I+ L IE+ VN+II N V RIM Sbjct: 582 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISKDLLTKIENRVNEIILNNTAVKLRIM 641 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + AIA GA AL KY D VR +S+ D +S LCGGTHV TG+I I+SE Sbjct: 642 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 701 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+I AG+RRIEAI G+ E L +A V++ ++ +++ I EE L+ Sbjct: 702 SAIAAGVRRIEAIAGKHVIKQARQNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 761 Query: 774 HAKRK---LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K L L +D+ I + + I + D + ++ + K IQ+ +++++ Sbjct: 762 LHQLKYNQLILCEKDIQNMADNIGKIKLVYKNIEDYDLQIVRKAVSNTTKNIQNLVMVVI 821 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +KK++++I V++++ ++ A +L + + GG GGG +AQ G +K Sbjct: 822 S-NNDKKSTIIIGVSDNITNKIQANNLVKEIINYI-GGSGGGSATLAQIGCQYTSKL 876 >gi|1565288|emb|CAA69650.1| alanyl-tRNA synthatase [Thermus thermophilus] Length = 882 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 352/912 (38%), Positives = 509/912 (55%), Gaps = 59/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57 + IR FL FF+ GH LPS SLIP +DP+L+FT++GM P K F G + Sbjct: 1 MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ VTT Q+C+R G D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172 LD RL++TV+++D+EA+++W+ + G+ ++I R ++N+W GP GPC Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQN----KQERFILPKMSIDT 226 SE F+D+G G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SETFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQAPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +IQ +++G YEG V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG +N GRGYV+RR++RRA+ + LLG ++P + L P + +G YPE+ + Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464 RG G+D F +A+EEQ+SR+RA ++ L + GAT+F+GY+ L Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V A++ + + EA G +V+VV D+TPFYAE Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G G R ++ +K GIF+H A VE G+LR + +D RR Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ +E VN I Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703 + PV R M E+A GA AL G KY + VRVV VE G+ S LCGG HV TG Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E++ Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 E ++ + K +L L S + + + + +D+K L+ D L Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + ++L G K S + A L R A+ GG G GG+ +AQ Sbjct: 812 ARGADVALVLSGGQAVLKLS-----PKAQGMGLEAGALFRALAEKAGGRG-GGKGALAQG 865 Query: 878 GGPNGNKADQAI 889 GG + KA +A+ Sbjct: 866 GGLDPRKAREAL 877 >gi|270292493|ref|ZP_06198704.1| alanine--tRNA ligase [Streptococcus sp. M143] gi|270278472|gb|EFA24318.1| alanine--tRNA ligase [Streptococcus sp. M143] Length = 872 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 330/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE G E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV + VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVAENAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNAEYTLEIDTDRRLRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGRHATQAGSLNEVEFLRFDFTHFQAVTVEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGYRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIVN-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLEAVAGKL 872 >gi|296876817|ref|ZP_06900865.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] gi|296432319|gb|EFH18118.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] Length = 872 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 486/918 (52%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL+ G ++ L ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDRDGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESSF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ +S LCGGTHV +T E Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTIGG-----YSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + + +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV + K +VL+ +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGD-KVNVLVASK---TKEVHAGNVIKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|187933980|ref|YP_001885372.1| alanyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B] gi|205830030|sp|B2THN0|SYA_CLOBB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187722133|gb|ACD23354.1| alanine--tRNA ligase [Clostridium botulinum B str. Eklund 17B] Length = 879 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 318/911 (34%), Positives = 505/911 (55%), Gaps = 50/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L FF+ H L S SL+P ND +L+ N+GM P K FTG ++P Sbjct: 1 MKFTKTNDLRDAYLNFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + +TT QKCVR G D+DNVG T+RH TFFEMLGNFSFG YFK+ I AW+ LT Sbjct: 61 KRITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L + +LY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F Sbjct: 117 ELPKEKLYVTIYLDDDEAYEYWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFS 175 Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 + + +P E + ++ IE+WNLVF QF+ K L +IDTGMGLER+A V Sbjct: 176 RTDEVPKNSEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q K + ++ID +++++ + +KY +N V+ R+I DH+RS +F+I+D I+P+N Sbjct: 236 MQNKNSIFEIDTLENILKEVGNLASVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + + LG + + +L + + SAYP+L K I++ ++ E Sbjct: 296 EGRGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCSSAYPDLEVKKEYIKKVIKIE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F +TLD G+ +L+ ++S L +++L G FKLYDT G P+++ ++IL GL+ Sbjct: 356 EDKFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEGLS- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++ ++EQR RAR+ T+ + T F GY+ Sbjct: 415 LDEDGFHEEMKEQRERARSARKTSNYMGTDVKTLDIISSEIETTFDGYEN---------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + + VK +V + + G VV D TPFYAE GGQ+GDTG Sbjct: 465 -------------DSLIAEVKTLVNGEDFADSITEGDNAVVVTDVTPFYAEMGGQIGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + +I D +K G +H G L+ + L +D R + NH+ATHL Sbjct: 512 TIYNDNFKGKILDTKKNIGGKIIHFVEAISGELKVGDKVTLEVDNARRENIKKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LGSHV Q GS ++ D LRFD +H + + EL +E VN+ I PV T Sbjct: 572 LDSALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTT 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A SGA + KY ++VRVV G +S LCGGTH+ +TG+I L I+S Sbjct: 632 EMDLQEAKNSGAVGIFDDKYAEKVRVV-----CAGEYSKELCGGTHIDNTGKIGLFKIIS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I AG RRIEA+TG A + + E LK ++ LK S+ + ++++ +E ++ + Sbjct: 687 ENGIAAGTRRIEAVTGMEAYKLVNEKAELLKQISGKLKCSEKEITSKLDQQSKEMKEKEK 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K + ++ S + +N +++ + +VD + L+ + + ++ + + + +L Sbjct: 747 EITILKSKFASMEINDIINSAKDVKGINIVAYALKDVDGEALRGLCEKVRDNVNNSLTLL 806 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K + + ++ + + + + A +LGGGG GGRP MAQ+GG K Sbjct: 807 TSSV-DGKVVICAMADKEAVSKGAHCGKVIKEVATILGGGG-GGRPDMAQAGGKLPEKIS 864 Query: 887 QAIAGVASFLK 897 +A+ V ++ Sbjct: 865 EALDSVYKIVE 875 >gi|116491184|ref|YP_810728.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1] gi|122276634|sp|Q04EQ9|SYA_OENOB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116091909|gb|ABJ57063.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1] Length = 885 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 317/921 (34%), Positives = 483/921 (52%), Gaps = 65/921 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N + IR FL+FFQ GH++ PS SLIP +DP+L++ NSG+ K F G P Sbjct: 1 MKKLNSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI AW+LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + ++ +L+IT Y D E +LW+ + A I +DNFW + E GP GP +E+F Sbjct: 117 WYGIEPEKLFITYYPRDTETKELWESQADFVAGHTIP--QDDNFWDIGE-GPSGPDTEVF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G E ERY+EIWN+VF QF + + LP +IDTG Sbjct: 174 FDRGPKFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFL 285 MGLER+ ++ + N++ DLF +I+ EQ++G +Y + V+ +VI DH+R+ +F Sbjct: 234 MGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVITDHIRAVTFA 293 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I+DG LP N GRGYV+RR++RRA+ + R L +P + L+P + M + YPE+++ + Sbjct: 294 ISDGALPGNTGRGYVIRRLLRRAVMHGRKLEIEKPFLTQLVPIVGKIMEAYYPEILENED 353 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQD 403 I ++SE+ RF KTL GL LLD ++ KD ++G AFKL+DT+G PL+ ++ Sbjct: 354 KIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATQISGKDAFKLFDTYGFPLESTEE 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D SF++ +++Q++RAR L + + +L + ++G Sbjct: 414 QAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQD--EALMSLKVPSVYVG---- 466 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 ++ + + AI+ + V++A +GQK ++FD+TPFYAE Sbjct: 467 ------------------WKQSSVDDAKIAAIIVDDQQVDDAKAGQKALLIFDKTPFYAE 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ D G ++ + A H L+ + L +D Sbjct: 509 MGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISDLKIGQKVNLRLDMHRHVA 568 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 +S NH+ATHLL AL ++ ++ Q GS + PD LRFD TH P+ + L IED VN Sbjct: 569 VSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDLVNQK 628 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 IA LPV + E A GA A+ G KY +VRVVS+ G + GGTH +T Sbjct: 629 IADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTHAKNT 683 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761 E+ L IVSES I AG RRIEA+TGQ A L ++ LK A FL + +V ++ Sbjct: 684 SELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVPDKIV 743 Query: 762 EIWEEYRKLQLIHAKR--KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDAL 816 ++ + +Q K D K ++++ I L+ ++D Sbjct: 744 DLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKIVDEW 803 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +++ S +I+ + + KA ++ + + A ++ + + + GG GGGRP AQ Sbjct: 804 RQRAVSDLII-IATNNNGKALLVAASAK--PNEVKAGNVVKAISPKIQGG-GGGRPDFAQ 859 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N A+A V+ +L+ Sbjct: 860 AGGKNPAGIANALASVSEYLE 880 >gi|307564458|ref|ZP_07626999.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A] gi|307346818|gb|EFN92114.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A] Length = 884 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 324/934 (34%), Positives = 486/934 (52%), Gaps = 88/934 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKSPEPRRR 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 61 TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLS 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 ++ +Y+TV++ D+EA K W K L D II +DNFW M +TGPCGPC+ Sbjct: 121 EKDIYVTVFEGSKDENIPRDDEAAKYWSK--HLPKDHIINGNKHDNFWEMGDTGPCGPCT 178 Query: 174 EIFFDQGE--CIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G G +++ + IEIWN+VFMQF +++ L IDTGMG Sbjct: 179 EIHIDSRPLDERNGVLGRDLVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHRV 274 ER+ +LQ K +NYD D+F+ +I+ E ++ KY + V RV Sbjct: 239 FERLVRMLQGKHSNYDTDIFQPIIKRIEALSNYKYGFTSPTGKDGECLTEQEKIDVAMRV 298 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM 333 I DHLR+ +F IADG LP+N GYV+RRI+RR + YA L E M LLP L +EM Sbjct: 299 IADHLRAVAFSIADGQLPSNAKAGYVIRRILRRGVRYAYTFLNQREAFMYKLLPTLVSEM 358 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLY 391 G+AYPEL + LI ++ E++ F +TL++G+ LL+G + L L+G AF+L+ Sbjct: 359 GAAYPELSAQEELIGRVIKEEEDSFLRTLEKGITLLNGAMDELKAHGQSCLDGKEAFRLF 418 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G PLD+ + I G +D F+ + +Q++RAR ++ T W +++ Sbjct: 419 DTYGFPLDLTELICRENGYT-VDEKQFDMEMSQQKARARNAAV-----TENGDWMIVRQ- 471 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 G F+GYD + RKV +K Sbjct: 472 -GEQTFVGYDYTEYECRILRYRKVTQKKHSF----------------------------Y 502 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 EVV D TPFY E GGQ+GD G + + + + D +++ E E S Sbjct: 503 EVVLDNTPFYGEMGGQVGDQGVLVSEQETVNVLDTKRENNQSIHII---EELPKNVEASF 559 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + +D R + NH+ATHLL +AL +LG H Q GS ++P LRFDV+H + IT E Sbjct: 560 MACVDTDKREASAANHTATHLLDYALKEVLGEHAEQKGSYVSPTTLRFDVSHFQKITDEE 619 Query: 632 LKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 L+ +E VN I + R E+A GA AL G KY D+VRVV S Sbjct: 620 LRKVERIVNGFIRADYSCDEHRDTPIEEAKKMGAVALFGEKYGDKVRVVRFGP------S 673 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 CGG H STG I IV ESS+ AG+RRIEA+TG + + Q++ L+ L L Sbjct: 674 CEFCGGIHAKSTGSIGFFKIVGESSVAAGVRRIEALTGANSEEAIYTQEDTLRDLKQMLN 733 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVD 805 + ++ +++ EE+ ++ + Q S ++ V+ + ++ VD Sbjct: 734 -NPKDLKVALKKYIEEHEAMKKDMESLRKQGVARHAKTLIESAKEVDGVHIVKAVLE-VD 791 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVL 863 S K ++ +++ S +I ++G + + +++++D++ + NA + R +A+++ Sbjct: 792 SSSAKDIVFKVREAFDSKLICVLGSVSGNRPQISVMLSDDMVKEGKKNAGKVIREAAQLI 851 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GG GGG+ H AQ+GG + + D A+ LK Sbjct: 852 KGG-GGGQAHYAQAGGKDASNIDAAVDKAVELLK 884 >gi|303258979|ref|ZP_07344958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|303261663|ref|ZP_07347610.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|303264332|ref|ZP_07350252.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397] gi|303265869|ref|ZP_07351766.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|303268202|ref|ZP_07354001.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|302637243|gb|EFL67731.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|302639922|gb|EFL70378.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|302642281|gb|EFL72629.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|302644604|gb|EFL74854.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|302646144|gb|EFL76371.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397] Length = 872 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREIEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G + + FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|291530562|emb|CBK96147.1| alanyl-tRNA synthetase [Eubacterium siraeum 70/3] Length = 878 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 330/912 (36%), Positives = 496/912 (54%), Gaps = 53/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ +R ++L+FF+ GH + S+ L+P D +++ N+GM P K F G E+P Sbjct: 1 MKWTGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VTT QKC+R D+DNVG+T RH T+FEMLGNFSFG YFK A AW+ LTK Sbjct: 61 HRVTTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + RL++T+Y+ED+EA +W G+ D+II++ DNFW +GPCGPCSEI FD Sbjct: 117 EIPEDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFD 175 Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +GE P + E +R IEIWNLVF QF+ K L +IDTGMGLER+A V+ Sbjct: 176 RGEKYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVM 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N +++D +++++ V G+ Y V+ RVI DH+RS++F++ DGI P+NE Sbjct: 236 QDVDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + R+L P + + + E +AYPEL + + I++ +++E+ Sbjct: 296 GRGYVLRRLLRRAARHGRMLDVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E F KT+D+G+ +L + L IL+G+ FKL+DT+G P+D+ ++IL R Sbjct: 356 ESFAKTVDKGMQILGEFIKELSADDTHKPILSGENLFKLHDTYGFPVDLTREILQERN-I 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 GID F + + EQ+++AR++ G G E +L T F+GY L Sbjct: 415 GIDEERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + A+++ GE+ + G +V VV D TPFYAE+GGQ+GD Sbjct: 464 ---------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDC 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +Q+ D +K G F+ + VE G T+ S+ +D + R + NH+ H Sbjct: 509 GTITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG HV Q GS + P RFD +H +T EL+ IE VND I +PVVT Sbjct: 569 LLQAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A GA AL G KY D VRVV G S+ CGGTH+ +T + L I+ Sbjct: 629 EELPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKL 770 SE+S+ +G+RRIEA+TG S + ++A LK + V+ + E + E + Sbjct: 684 SETSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHTM 743 Query: 771 QLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + Q+ ++ + S ++S V L+ D L+ S + Sbjct: 744 QAEIDRLNGIISMSQMKNVTEGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFVA 803 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+S K + I E + NA + + A + GG G GG+P A +G + K Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKEIAAIAGGKG-GGKPDTAMAGIADVTKI 862 Query: 886 DQAIAGVASFLK 897 D+A+ + +K Sbjct: 863 DEALLALTDIVK 874 >gi|309775356|ref|ZP_07670361.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916873|gb|EFP62608.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 875 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 329/916 (35%), Positives = 502/916 (54%), Gaps = 62/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IR FL++F+ GH + P +SL+P NDPTL++ N+G+ K F G EKP Sbjct: 1 MKQLTGSQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + Sbjct: 61 NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +LY++VY +D +A+++W ++ + I++ T+DNFW + E GP GP SEIF Sbjct: 117 WIGFPKEKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 +D+GE E +RYIE+WN+VF QF+ + + +E LP+ +IDTGM Sbjct: 174 YDRGEAYDPQGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKEYKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIA 287 GLER+ ++Q N+D DLF +I A+EQ T ++Y + N + RVI DH+R+ +F +A Sbjct: 234 GLERLVCLVQGGETNFDTDLFLPIIHATEQYTSLRYADAENKMAFRVIADHIRTVTFALA 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG L +NEGRGYVLRR++RR + +A+ L M L+P + M YP L + I Sbjct: 294 DGALFSNEGRGYVLRRVLRRGVRFAKKLNIQGAFMYKLVPVVYDIMKDYYPYLEEKLDYI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF TL G LL V+ +++G AFKLYDT+G PL++ +I Sbjct: 354 ARLVKAEEERFHATLADGEKLLLQVMEEKKDSHVIDGKTAFKLYDTYGFPLELTVEIAQE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G + +D F+ +++QR RARA S ++ I L E + FIGYD Sbjct: 414 SGYS-VDKDGFDAEMQQQRERARAAREAAESMGSQSI--DLMEFTRESTFIGYD------ 464 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S+ V A+ + G V+ + +V+FD T FYAE+GGQ Sbjct: 465 -----------------VRHTSATVIALFKDGVRVDAIS--DEGDVIFDTTVFYAESGGQ 505 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G +G++ + + K + H ++ G LR + ++ L +D + R ++ NH Sbjct: 506 VGDSGTLRAEGVQAVVNNTTKAPHKQHLSHVVITEGELRVQDTVTLQVDERKRDIITSNH 565 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THLL AL ++G+H+ Q GS ++ + LRFD TH + + +LK IE VN I+ + Sbjct: 566 SCTHLLQSALKQVVGTHIQQAGSFVSEEYLRFDFTHYEKVNEEQLKKIEQLVNQYISAHY 625 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V M E+A SGA AL KY D VRVV++ G S CGG HV++T EI + Sbjct: 626 TVSKVEMPIEEAKKSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGV 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766 I+SE SI +GIRRI A TG A +D L S+A+ LK+ V +V ++ +E Sbjct: 681 CKIISEESIGSGIRRITAKTGYDAYCEFAKEDATLHSIAADLKLKGISKVEEKVVQLLDE 740 Query: 767 YRKLQLIHAKRKL---QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +L+ A + L DL + + + + D+K LK ++ ++ + + Sbjct: 741 AAQLKKELAALQASMFALKANDLVHKMQPLNNRQVLIERVDGADAKALKDIVSNIRSQKE 800 Query: 822 SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + ++ L + K+ + + + + DL R +A V+ GG GGGRP MAQSGG Sbjct: 801 NCVVFLAAV-KDDRVTFVAGADALAVQSGIKCGDLVREAA-VICGGKGGGRPDMAQSGGK 858 Query: 881 NGNKADQAIAGVASFL 896 + +K ++A+ + + L Sbjct: 859 DASKVEEALHLIKNML 874 >gi|307187766|gb|EFN72738.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus] Length = 968 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 300/971 (30%), Positives = 457/971 (47%), Gaps = 84/971 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 N IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 1 MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 60 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LT Sbjct: 61 KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTD 120 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 L RLY+T + D+E LW + G+ A ++ DNFW M ETGP Sbjct: 121 VLKLPADRLYVTYFGGDEKNGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGP 179 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ +D+ + + +EIWNLVF+Q+ +++ LP+ ID G+ Sbjct: 180 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKSLPRKHIDCGL 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHL 279 GLER+ +V+Q K NYD DLF L A E+ T G + + +RV+ DH Sbjct: 239 GLERLVSVIQNKRANYDTDLFMPLFAAIEKATGAPSYQGKVGAEDVDGIDMAYRVLADHA 298 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG +P N GRGYVLRRI+RRA+ YA L L+ + +G +P Sbjct: 299 RTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVDLLGEVFP 358 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I + + E+ +F KTL RG LL+ ++ L + + GDVA++LYDT+G P+ Sbjct: 359 EVTKDPQNIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESSDTVPGDVAWRLYDTYGFPV 418 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + +GL EE + +A+ S G ++I + + Sbjct: 419 DLTQLMTEEKGLKIDI-----AGYEESKKQAQLISQNKAGGIDDQINLDIHAITEMQE-H 472 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G + + + K IV A+ + V++ SG++V ++ D+T Sbjct: 473 GI-KPTDDSPKYDYKVISSVKYEEYEFAPCIGIVIALRRAKTFVDQVTSGEEVGILLDKT 531 Query: 519 PFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + D + G +H V G LR + +D Sbjct: 532 NFYAEQGGQIYDEGFLVKVDDEATEIRVKNVQVRAGYVLHIGTVGEGTLRKGDKVYTNVD 591 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR + NHSATH L++AL +LG+ Q GS + PD LRFD T+ P+T+ ++K+ E Sbjct: 592 TARRRLVMANHSATHALNYALRKVLGTGADQKGSLVAPDRLRFDFTNKGPMTTEQVKNTE 651 Query: 637 DNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVEYEDGG-------- 687 + D++ +N + + N G A+ Y D VRV+S+ Sbjct: 652 NITADMVKENKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVISMGIPVDDLEKNPLST 711 Query: 688 ---VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 S CGGTH+ TG I I SE +I GIRRI A+TG A Sbjct: 712 AALETSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKAFRTATLLQNQ 771 Query: 745 LASFL--------KVSQGNVVGRVEEIWEE-----------------YRKLQLIH--AKR 777 L+ + V ++ E+ EE ++L+ +R Sbjct: 772 LSHLRETIETDNSGTNSKEYVKKIVELTEEIMHAVIPSWRKDNMRATLKELKKSLDDKER 831 Query: 778 KLQLNVEDLSCHKIADV-------NFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVG 829 + V + I + + ++ ++K L S + ++ +L+ Sbjct: 832 AAKAAVANTVVETIQSIIQSRVGCQVLVEVLEAYSNTKALDSALKKIRVLSPETSALLIS 891 Query: 830 ISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I ++ KK L V + + A + ++ A + G GGG+P AQ+ G N ++ Sbjct: 892 IDRDVKKIFALSSVPKSAVSKGLKANEWIQVIAPAM-QGKGGGKPESAQASGTNIACLNE 950 Query: 888 AIAGVASFLKK 898 I+ F + Sbjct: 951 IISRANEFANQ 961 >gi|261366901|ref|ZP_05979784.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176] gi|282571016|gb|EFB76551.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176] Length = 886 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 330/907 (36%), Positives = 488/907 (53%), Gaps = 44/907 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L FF+ GH L S L+P +DP+L+ NSGM P K F GQE+P VTT Sbjct: 6 LNELREKYLHFFETKGHLRLGSFPLVPKDDPSLLLINSGMAPMKKWFLGQEEPPRHRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++ VG T RH TFFEMLGNFSF YFKE I AW+ LTKE ++ Sbjct: 66 CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTKELEIPAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LYI+VY +D+EA+ +W K G+ D ++R DNFW +GPCGPCSEI++D+G Sbjct: 122 KLYISVYLDDDEAYDIWTKKVGIPEDHMVRFGKEDNFWEHG-SGPCGPCSEIYYDRGPEH 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +RY+EIWNLVF QF+ K LP+ +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPTCKVGCDCDRYMEIWNLVFSQFDSDGKGHYERLPRPNIDTGMGLERLACVMQDVG 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D ++ E+++G Y + ++ RVI DH+RS+ F+++DGILP+NEGRGY Sbjct: 241 NLFEVDTVASVLHHVERISGKHYGDSEKDDISIRVITDHIRSTVFMVSDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R+LG P + L+ + + YPEL + + I++ + +E+ERFG Sbjct: 301 VLRRLLRRAARHGRMLGIDRPFLTELVDTVIESSEAGYPELREHESYIKKVVGTEEERFG 360 Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D GL +L+ ++ + +L+G FKL DT G PLD+ ++I G +D + Sbjct: 361 RTIDAGLNILNNMIDERKAAGETVLSGSEVFKLNDTFGFPLDLTKEIAAEAGFT-VDEEA 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ + +QR RARA L F TQF GY+ L + ++ Sbjct: 420 FHAEMTKQRERARAERLAKDISGWSADLFGELAAE-PTQFDGYETLHETAKVQALSDGEE 478 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 I S + V VV D+TPFYAE GGQ+ D G Sbjct: 479 LADAIATDEAGESK-----------------EGVLVVLDRTPFYAEMGGQVADYGYIASG 521 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +L++T V+K +G FVH + G ++ + +D R + NH+ATHLL AL Sbjct: 522 DAKLKVTQVKKTPKGYFVHTCELLDGTIKVGDEVTAFVDEARRMAICRNHTATHLLQKAL 581 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS FD TH +T EL +E VN+ I +LPVV + + E Sbjct: 582 REVLGEHVHQAGSYQDDKITHFDFTHFSAVTPEELTEVERRVNEKIFASLPVVIQNLPIE 641 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY VRVV D G S+ CGGTHV +T +I I+SESS+ Sbjct: 642 EAKKMGAMALFGEKYGSVVRVV-----DAGGWSTEFCGGTHVQNTSQIGCFKILSESSVA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA TG L + + L A+ LK + +V R E + E ++ Sbjct: 697 AGIRRIEATTGFGVLRLLDERTDVLAKTAAALKANNLKDVADRAEAMAAELKETNKQLDG 756 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K ++ + + + V +S ++ + L+ ++D ++ K + + +LVG + Sbjct: 757 LKAEMAAAKVDGLFENAADVDGVRIISAYLTGTGADTLREMVDKVRDKAPNAVTVLVG-N 815 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K + + V+ + R A L + A + GG G GG+P A +G + +K D+A+ Sbjct: 816 DGSKTMMAVGVSANAKARGLKAGVLVKKIAAIAGGNG-GGKPDFAMAGIRDISKIDEALN 874 Query: 891 GVASFLK 897 V +K Sbjct: 875 AVPEIVK 881 >gi|320335628|ref|YP_004172339.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211] gi|319756917|gb|ADV68674.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211] Length = 894 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 340/923 (36%), Positives = 493/923 (53%), Gaps = 70/923 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56 + + IR +L+FF+ GH LPS SLI DPT +FT +GM PFK F G Sbjct: 8 STAEIREKYLQFFESKGHLRLPSHSLIAP-DPTTLFTVAGMQPFKPQFMGSAPKFSGVPG 66 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT- 115 ++ VTT QKC+R G D++NVGRT RH + FEMLGNFSFG YFK AI AW+ LT Sbjct: 67 EHRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMLGNFSFGDYFKRDAIHWAWEFLTG 122 Query: 116 -KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPC 169 + LD +LY+T+Y++D+EAF W + GL + R ++NFW GPC Sbjct: 123 PEWMGLDASKLYVTIYEDDDEAFGYWTQEIGLDPSHVHRFGADENFWPADAPLKGPNGPC 182 Query: 170 GPCSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQN---KQERF--ILPK 221 GPCSEI+FD+G E R++EIWNLVF QF++Q+ LP Sbjct: 183 GPCSEIYFDRGPAYGDDSWADYATTRESARFLEIWNLVFPQFDRQDPAADGSPVLADLPF 242 Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281 +IDTGMGLER+A+V+Q+ + Y D+FK L++ +++G YEG V+HRVI +H+RS Sbjct: 243 KNIDTGMGLERIASVVQDVPDFYSNDVFKPLVERVAELSGKPYEGEVSVSHRVIAEHVRS 302 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + +ADG++ +N GRGYV+R+I+RRA +A LLG EP + L+P + MG AYPE+ Sbjct: 303 VTMTVADGVVLSNTGRGYVIRKILRRASRHAYLLGLREPTLHKLVPLVVEAMGGAYPEVR 362 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 +E +RSE+ERF +TL+ G+ LD +L + + L+G+ AF LY T+G PLD+ Sbjct: 363 SEAARVEAAIRSEEERFLRTLESGMGRLDALLGKMERGATLSGEEAFTLYGTYGFPLDLT 422 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++I G +D F++ALE + ARA S G + + AT F+GYD Sbjct: 423 REIAEEYG-VSVDEAGFDKALEADQELARAGS-KYGKSELFGVVAEVLGDLPATTFVGYD 480 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L V AIV GE + +G + +VV D+TP Y Sbjct: 481 ELE-----------------------AEGRVLAIVSGGEPLSRLTAGSEAQVVLDRTPMY 517 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE GG++GDTG DG + D +K G+F+H V G L + ++ + Sbjct: 518 AEGGGEVGDTGVLTWDGGEAAVLDTRKTPGGVFLHTVEVLHGELSEGAEVRALVNPDRQ- 576 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 +H+ATHLLH AL +LGS V Q GS + PD LRFD TH +++ E+ +E VN Sbjct: 577 ATERHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHGSALSADEVAQVEALVNR 636 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY----EDGGVHSSALCGGT 697 + + PV R M ++A ASGA AL G KY D VRVVSVE D V S LCGG Sbjct: 637 WVTADFPVTWRTMPIDEARASGAMALFGEKYGDEVRVVSVEGGVPFGDTEVASRELCGGA 696 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+ TGEI I+S+ ++ AG+RR+EA+ G+ A + + AS + + + Sbjct: 697 HVTRTGEIGAFVILSDENVAAGVRRVEALAGEAAVRWVRERLGAAGRAASSVNATVDQLP 756 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELK 810 R+ ++ + + Q A K QL + ++ + +S V+ EL+ Sbjct: 757 ERIAQVQAQLKAAQGEIAGLKRQLAQAQMGGGSAGSQVRELGGFKVAAVRLSGVEGNELR 816 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 D+ ++ + + ++ G +++ T+D + R +A L A GG G G Sbjct: 817 GAADSFLEQTGADVAVVAGDKG-----LVVKATKDAVGRGAHAGQLIGKLAAAGGGKG-G 870 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 GRP MAQ+G + + A A+ Sbjct: 871 GRPDMAQAGVQDADAALGALDSA 893 >gi|260591299|ref|ZP_05856757.1| alanine--tRNA ligase [Prevotella veroralis F0319] gi|260536665|gb|EEX19282.1| alanine--tRNA ligase [Prevotella veroralis F0319] Length = 888 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 322/937 (34%), Positives = 490/937 (52%), Gaps = 90/937 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D G +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271 GMG ER+ ++Q K +NYD D+F +I+ E+++G KY + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIEEIERLSGKKYNHTFPEGPNGEGINDEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E M L+ L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYKLINVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388 EMG AYPEL + LI ++ E++ F +TLD+G+ LL+G + L L+G AF Sbjct: 359 HEMGVAYPELTAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGKTELDGKEAF 418 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + I G +D FN+ +E+Q++RAR ++ W + Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMEQQKARARNAAV-----VENGDWEIV 472 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 +E G +F+GYD + RKV +K Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + + + D +++ V+ E Sbjct: 505 --YEIVLDYTPFYGEMGGQVGDQGVLVNEDETINVIDTKRENNQSIHI---VKELPKDVE 559 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + ID R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 ADFMACIDTDKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 DEELRQVEKLVNEMIRKDYPLDEHRDTPMEEAKEMGAVALFGEKYGDKVRVVRFGP---- 675 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S CGG H STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L + Sbjct: 676 --SCEFCGGIHAKSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKA 733 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802 + ++ + + EE ++ + + Q + V+ + ++ Sbjct: 734 MFN-NAKDLKAVLTKFVEENDAMKKEVERFRAQAVDRAAKSLVDRAETVNGVHVVKAVLP 792 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860 VD K ++ +++ + ++ ++G E + + I++++D++ NA + R +A Sbjct: 793 -VDPASAKDIVFKVREALPENLVCVLGSVYENRPQLSIMLSDDMVKEHDLNAGKVIREAA 851 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 K++ GG GGG+PH AQ+GG + + + A+ V L Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGINAAVEKVIELLN 887 >gi|305666370|ref|YP_003862657.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170] gi|88708362|gb|EAR00599.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170] Length = 871 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 322/920 (35%), Positives = 485/920 (52%), Gaps = 73/920 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N IR FL+FF+ H+++PS+ ++ +DPTLMFTN+GM FK F G + Sbjct: 1 MNSKEIRAQFLDFFETKKHKIVPSAPMVIKDDPTLMFTNAGMNQFKEFFLGNSVAKSPRM 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG YFK+ AI+ AW+LLT + +D Sbjct: 61 ADTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTDKLQID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY++V++ D EA++LW I + D+II DNFW M + GPCGPC Sbjct: 121 KDSLYVSVFEGSKDSDNLEMDNEAYELWSGI--VPKDRIIMGNKKDNFWEMGDQGPCGPC 178 Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ +EIWNLVFMQ+ ++ LP+ +DTGM Sbjct: 179 SEIHVDIRPAEEKAETSGAFLVNQDHPLVVEIWNLVFMQYNRKADGALEPLPEKHVDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ VLQ +NYD D+F +I+ E +T Y N + RVI DH+R+ +F I Sbjct: 239 GFERLCMVLQGVQSNYDTDVFTPIIREIETITNADYGKNEEIDIAIRVIADHIRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP M L+ L MG+A+PEL + Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTETMGNAFPELKDQRQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE ++ E+ F TL++GLVLLD ++S +++ G AF+LYDT+G P+D+ IL Sbjct: 359 LIENVVKEEENSFLNTLEQGLVLLDNLVSKAK-GKVVQGRKAFELYDTYGFPIDLTALIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G +D F++A++EQ+ R+R+ S ++ W L + +F+GYDLL Sbjct: 418 EEKGYT-LDEKGFHEAMKEQKDRSRSA-----SEIAKEDWMVLSDD-SEQEFVGYDLLET 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + RK V G++ ++VF+ TPFY E G Sbjct: 471 NVKLVKYRK---------------------------VTSKKEGEQYQMVFNLTPFYPEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + KK VH A + T + +D + R++ + Sbjct: 504 GQVGDKGYLEAPNGDVVYILDTKKENNEIVHFA--KNLPKSTSDTFKAVVDKKQRQRTAA 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+HV Q GS + LRFD +H +T EL+ +E+ VN I Sbjct: 562 NHTATHLLHQALREVLGNHVEQKGSAVHSKYLRFDFSHFSKMTVEELREVENFVNARIEG 621 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 LP+ R + E+A+ GA AL G +Y + VR + S LCGG HV T + Sbjct: 622 QLPLDENRSVPMEEALKGGAMALFGEEYGETVRTIRFG------QSMELCGGAHVKITSD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SE ++ AGIRRIEAIT + + L + L + N V V+ + Sbjct: 676 IWHFKIKSEGAVAAGIRRIEAITYDAVKDFYFHNNRSLFEIKDLLN-NAQNPVNAVKALQ 734 Query: 765 EEYRKLQLIHAKR---KLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819 +E KL+ + K + DL ++ + F++ + ++D+ +K + + Sbjct: 735 DENAKLKKEVEQLLKDKAKNLKGDLLAELKEVNGIQFLAKKV-DLDAAGIKDLSFEMGN- 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ + +L G + KA + ++++L+ NA + R K + GGG GG+P A + Sbjct: 793 NKNNLFLLFGTEQNGKALLSCYISKELVAEKNLNAGTIVRELGKCIQGGG-GGQPFFATA 851 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG N ++A++ +L Sbjct: 852 GGKNPAGIEEALSKAEEYLN 871 >gi|294672801|ref|YP_003573417.1| alanine--tRNA ligase [Prevotella ruminicola 23] gi|294472795|gb|ADE82184.1| alanine--tRNA ligase [Prevotella ruminicola 23] Length = 887 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 319/935 (34%), Positives = 483/935 (51%), Gaps = 89/935 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F +FF+ H ++PS+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 1 MTANEIRDSFKKFFESKQHAIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRR 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI +AW+ L L+ Sbjct: 61 ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLVDVLKLN 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LY+TV++ D+EA K W K + D II +DNFW M +TGPCGPCS Sbjct: 121 PEDLYVTVFEGSPEENIPRDDEAAKYWAK--HVPEDHIINGNKHDNFWEMGDTGPCGPCS 178 Query: 174 EIFFDQGECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 EI D G +++ + IEIWN+VFMQF ++ L IDTG Sbjct: 179 EIHVDSRTPEQKAASGKTGRELVNQDDPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTG 238 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--------------NHR 273 MG ER+ ++Q K +NYD D+F+ +I+A +Q+TG+KY R Sbjct: 239 MGFERLVRMMQGKHSNYDTDVFQPIIKAEQQITGLKYFTFEEETESPISKEQDDINVAMR 298 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332 V DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L + + L+P L E Sbjct: 299 VCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQKDGFLYKLVPTLVAE 358 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKL 390 MG A+PEL + L+ + ++ E+E F +TL++G+ +L+ ++ L+G AF+L Sbjct: 359 MGGAFPELEAQQQLVTKVIKEEEESFLRTLEKGIGMLNDAMNTLKAEGKTELDGVQAFRL 418 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + I G ++ FN +++Q+ RAR + W L Sbjct: 419 FDTYGFPLDLTELICRENGFT-VNEEQFNVEMQKQKDRARNA-----AAVENSDWVELAA 472 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G QF+GYD + RKV + Sbjct: 473 --GEQQFVGYDYTEYECHIIRYRKVTQ----------------------------KKNEF 502 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + + I D +++ V++ Sbjct: 503 YELVLDNTPFYGEMGGQVGDCGVLVNEAETINIIDTKRENGQSVHI---VKQLPKDPAAQ 559 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D R + NH+ATHLL +AL ILG HV Q GS ++PD LRFD +H + +T Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQILGDHVEQKGSFVSPDTLRFDFSHFEKVTDE 619 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 +L+ +E VND+I Q++ + R + ++A GA AL G KY D+VRVV Sbjct: 620 QLREVERMVNDMIRQDIHIDEHRDVPFDEAKKLGAIALFGEKYGDKVRVVRFGP------ 673 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S CGG H SSTG I I+SESS+ AGIRRIEA TGQ L ++ LK++ +F Sbjct: 674 SCEFCGGIHASSTGRIGFFKIISESSVAAGIRRIEAKTGQECEELLYQTEDILKAVKAFF 733 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV 804 + ++ G +++ EE+ ++ + Q ++ V +S ++ + Sbjct: 734 N-NAKDLQGVIKKYIEEHDSMKKEIEAFQAQAVERAAKQLVDKAREVNGVKVVSAVLP-M 791 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862 + K + ++ ++ ++ ++G K + I++++D++ NA + R +AK+ Sbjct: 792 NPAAAKDLAFKIRAAVEGSLLCVLGTHDNNKPQLSIMMSDDMVSDHGLNAGQMVREAAKL 851 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + GG GGG+PH AQ+GG N + A+ V K Sbjct: 852 IQGG-GGGQPHFAQAGGKNADGLSAAVDKVLELAK 885 >gi|322387551|ref|ZP_08061160.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779] gi|321141418|gb|EFX36914.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779] Length = 872 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D +++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDTDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFLPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G + +++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVTEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L LTID R ++ Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLTIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A++G+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVSGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNLLVASKTKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|331266120|ref|YP_004325750.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5] gi|326682792|emb|CBZ00409.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5] Length = 872 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y ED++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPADKLYMTYYPEDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVNEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + VA L Sbjct: 855 GSNQAKIQDLLDAVAGKL 872 >gi|146299654|ref|YP_001194245.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101] gi|205830093|sp|A5FIP9|SYA_FLAJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146154072|gb|ABQ04926.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101] Length = 879 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 325/928 (35%), Positives = 484/928 (52%), Gaps = 81/928 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R FL+FF+ GH ++PS+ ++ +DPTLMF NSGM FK F G P + Sbjct: 1 MKSQDVRKQFLDFFESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY++V++ D+EA+ +WK + + D+II DNFW M + GPCGPCS Sbjct: 121 KENLYVSVFEGSKEDNVPFDQEAWDIWKTL--IDEDRIILGNKKDNFWEMGDQGPCGPCS 178 Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + + G + + + +EIWN VFM+F ++ LP +DTGMG Sbjct: 179 EIHVDLRSAEEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDH 278 ER+ LQ KT+NYD D+F LI+ E +TG KY N+ + RV+ DH Sbjct: 239 FERLCMALQGKTSNYDTDVFMPLIREIETITGAKYTTNDVTGISEEQNKMNIAIRVVADH 298 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 +R+ +F IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MG ++ Sbjct: 299 VRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQMGDSF 358 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PE+ K L +R E+ F KTLD+GL+LLD V+ + + ++G AF+LYDT+G P Sbjct: 359 PEIRTQKALCSNVIREEENSFLKTLDQGLILLDAVILN-NTGDTIDGKKAFELYDTYGFP 417 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ IL RGL +D F + L+ Q+ R+RA S T W + E +F Sbjct: 418 IDLTALILSERGLK-LDEEGFQEQLQLQKERSRAA-----SKVTAGDWNVIVEDDIQ-EF 470 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GYD L + + R+ VE G+ ++VF+ Sbjct: 471 VGYDRLSQQVKITKYRR---------------------------VESVKDGEIFQLVFNA 503 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFY E+GGQ GD G + KK +H + + +D Sbjct: 504 TPFYGESGGQTGDKGYLEAQNGDIVYIIDTKKENNQTIHL--TQSLPENITGTFNAVVDA 561 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + S NHSATHLLH L ILG+H+ Q GS + LRFD +H +T EL +E+ Sbjct: 562 NQRAKTSSNHSATHLLHQGLRKILGTHIEQKGSMVRNASLRFDFSHFSKVTDEELLEVEN 621 Query: 638 NVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN I ++LP++ + ++ A+ GA AL G KY D VR + S LCGG Sbjct: 622 FVNARIRESLPLIEKRAIPKEQALEDGAIALFGEKYGDLVRTIKFGD------SVELCGG 675 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV++T +I IVSE ++ AGIRRIEAIT + A+ + Q L + LK + + Sbjct: 676 THVANTSDIWHFKIVSEGAVAAGIRRIEAITSEAAKEYFESQAVSLAEIKEALK-NAQDP 734 Query: 757 VGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKS 811 V + + +E +L+ K K + DL+ +I V F++ + +++ + K Sbjct: 735 VKSILALQDENAQLKKQLEALLKDKAKNMKADLAKELQEINGVQFLAKQV-DLNPEGAKD 793 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869 + L + + ++ + E K + ++++++ NA + R K + GGG G Sbjct: 794 LAYELGGSY-NNLFVVFATAHEGKPMLTCYISKEIVASKNLNAGQVVRELGKYIQGGG-G 851 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897 G+P A +GG N + +A+A F+K Sbjct: 852 GQPFFATAGGKNVDGIGEALAKAVDFVK 879 >gi|326496549|dbj|BAJ94736.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 981 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 326/927 (35%), Positives = 493/927 (53%), Gaps = 71/927 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +IR FL+F+ GH++LPSSSL+P +DPT+ T +GM+ FK IF G+E T Sbjct: 84 SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 142 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI+ AW+L TKE+ L Sbjct: 143 TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKDAIKWAWELTTKEYGLPP 198 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+I+V+++D+E F +W G+ ++I R+ +DNFW+ TGPCGPCSE+++D Sbjct: 199 ERLWISVFEDDDETFSIWLNEVGVPKERIKRMGEDDNFWTSGATGPCGPCSEMYYDFHPE 258 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G L + R+IE +NLVFMQ+ + + L + +IDTGMGLERMA +LQ N Sbjct: 259 -RGSLNADLNDDSRFIEFYNLVFMQYNKNDDGSLEPLKQKNIDTGMGLERMARILQNVPN 317 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +++ + + + Y + N +VI DH+R+ +LI+DG++P+N GRGY Sbjct: 318 NYETDLIFPIMEKAASMALVSYSKADDAMRTNLKVIGDHMRAVVYLISDGVIPSNIGRGY 377 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHL--------LPALCTEMGSAYPELIQAKLLIEETL 351 V+RR++RR + RL+G + + + P++ + I L Sbjct: 378 VVRRLIRRVVRTGRLIGMRGDGHENSEGAVLPSLAETVISLSSEIDPDVESRRKSILGEL 437 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDIL 405 + E+ RF +TL RG LLD +L L+G F LYDT+G P++I +I Sbjct: 438 QREELRFVQTLGRGEKLLDELLDEALGSAGDIGVPCLSGKDVFLLYDTYGFPIEITAEIA 497 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ ID+ F+ +E QR +++A + + + + T+F+GY+ L Sbjct: 498 SERGVT-IDMKGFDIEMENQRKQSQAAHNVIKLSVGNET--EIVKSIPDTEFLGYESL-- 552 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +++VK ++ G VE G VE++ D+TPFYAE+G Sbjct: 553 ---------------------FATAVVKGLLINGSPVENVSEGTDVEILLDRTPFYAESG 591 Query: 526 GQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 GQ+GD G ++I DVQK IFVH +++G + + +D + Sbjct: 592 GQVGDNGFLYVYEEEGGKQNAVIEIKDVQKSLGNIFVHKGTIKQGSIEVGKKIDAAVDGK 651 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R+ +H+ATHLL AL +++GS SQ GS + D LRFD + +P+T EL IE Sbjct: 652 LRQGAKAHHTATHLLQSALKSVIGSETSQAGSLVAFDRLRFDFSFHRPLTEKELLEIESL 711 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN I+ + T +M +DA +GA A+ G KY ++VRVV V S LCGGTH Sbjct: 712 VNQWISDATHLETNVMALQDAKNAGATAMFGEKYGEQVRVVEVPG-----VSMELCGGTH 766 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 VS+T EI I+SE I +G+RRIEA+ G ++ +D ++ L S LKV +V Sbjct: 767 VSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCSRDNYMRHLCSSLKVKAEDVNS 826 Query: 759 RVEEIWEEYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811 RVE I EE R L+ A K + +V + + +VD+ LKS Sbjct: 827 RVETILEELRTARNESSSLRSKIAVLKAASLASKAVLVEPHNVRILVENMGDVDADGLKS 886 Query: 812 VMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869 + L +Q ++L + K S++ + ++ A AK+ GGGG G Sbjct: 887 AAEHLVGTLQDPAAVILGSSPGDGKVSLVAAFSPGVVKMGVQAGKFVGGIAKLCGGGG-G 945 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+P+ AQ+GG A+ + + Sbjct: 946 GKPNFAQAGGRKPENLPDALEKARAEI 972 >gi|297562016|ref|YP_003680990.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846464|gb|ADH68484.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 888 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 320/921 (34%), Positives = 483/921 (52%), Gaps = 62/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL FF+KNGH ++PS+SLI DPTL+ +GMVPFK F GQ P + Sbjct: 1 METAEIARRFLSFFEKNGHTVVPSASLIAE-DPTLLLVPAGMVPFKPYFLGQRTPPHDTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VG+T+RH TFF+MLGNFSFG YFKERAI LAW+L+T Sbjct: 60 TSVQKCIRT----KDIEEVGKTSRHATFFQMLGNFSFGDYFKERAIPLAWELVTTPVEEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F +D RL++TVY +D+EA +W+ G+ ++I R+ +N+W M GPCGPCSEIF Sbjct: 116 GFGIDPERLWVTVYLDDDEAEAIWRDKVGVRPERIQRMGKEENYWDMGVPGPCGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231 +D+G G G + +RYIEIWNLVFMQ+E+ + LPK +IDTG+GLE Sbjct: 176 YDRGPEY-GVDGGPEADEDRYIEIWNLVFMQYERGEGSGKEYPILGELPKKNIDTGLGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+A VLQ N Y+ D+ ++ + ++TG +Y N + RV+ DH+RS+ L+ DG Sbjct: 235 RLAAVLQGVDNIYETDIIGRVLHRAAELTGTRYGDNQEQDVMLRVVADHVRSAVMLVGDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLL-GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 + P NE GYVLRRI+RR++ RLL G + L M YP+L+ +I Sbjct: 295 VRPGNEKAGYVLRRILRRSIRNLRLLSGTETAFLHELTEVSIDAMKDIYPDLLDRADVIH 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F +TL G L + +G AF+L+DT+G P+D+ ++ Sbjct: 355 GVIDTEERNFAETLRAGTALFGRAAERTRAGGGTVFSGTDAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D SF + ++ Q+ A+A + G + ++ + E G T F+GY Sbjct: 415 EQGLS-VDESSFRELMQRQKDTAKADARSKKLGNADISLYARMLEGAGETDFLGYTESES 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S VK IV G A +G KVE+V D TPFYAE+G Sbjct: 474 -----------------------ESRVKGIVVDGVSAPAARAGDKVEIVLDSTPFYAESG 510 Query: 526 GQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL DTG + + + DVQK G+FVH V G + + ++ ID R + Sbjct: 511 GQLADTGTLTVDGRGVVDVEDVQKPLPGLFVHRGTVRSGEVVLDDTVHAGIDTGRRHAIE 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +HSATHL+H AL LG Q GS P LRFD T + L +E+ VN ++A Sbjct: 571 RSHSATHLIHSALRNALGPSAGQAGSENRPGQLRFDFTADSALGGERLAEVEEEVNTVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++PV T + ++A+ +GA A+ G KY DRVRVV + +S LCGGTHV ST Sbjct: 631 GDIPVQTEEKSLDEALKTGAMAMFGEKYGDRVRVVEM-----SDYSVELCGGTHVPSTAR 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + ++ ++ ESSI +G+RR+EA G A L + + L+ LK + + R++ + Sbjct: 686 LGIVKLLGESSIGSGVRRVEAAVGVDAFRRLSKESTLVGQLSEQLKTPREELPERIDSMV 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKELKSVMDALQK 818 R + K + ++ + +L+ ++ ++ Sbjct: 746 SRLRAAEREIEKLRAAQVLQAAGSIAEGARRHGAALVVAAPAPEGASGDDLRKLVLDVRG 805 Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ ++ + + K++ V+ A +L ++A+ LGGGG GG+P +A Sbjct: 806 RLGEDEPAVVAMTAVPKDRPVVVIATNKAAQKAGIKAGELVGIAARALGGGG-GGKPDIA 864 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG + K D+A+ V + Sbjct: 865 QGGGSDATKVDEALRAVEERV 885 >gi|298229736|ref|ZP_06963417.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254206|ref|ZP_06977792.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502666|ref|YP_003724606.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A] gi|298238261|gb|ADI69392.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A] Length = 872 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G + + FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|303254539|ref|ZP_07340643.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455] gi|301802125|emb|CBW34861.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV200] gi|302598507|gb|EFL65549.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455] Length = 872 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G + + FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|322376246|ref|ZP_08050739.1| alanine--tRNA ligase [Streptococcus sp. M334] gi|321282053|gb|EFX59060.1| alanine--tRNA ligase [Streptococcus sp. M334] Length = 872 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 329/918 (35%), Positives = 497/918 (54%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--KDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ ++F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESRF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYEASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ +KA H + L LTID R ++ Sbjct: 505 GQVADHGQILDESGKVVAIVTNVQKAPNGQALHTVEVLAPLALNQEYTLTIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|260911261|ref|ZP_05917862.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634634|gb|EEX52723.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 873 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 324/920 (35%), Positives = 488/920 (53%), Gaps = 75/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F +FF+ GH++ S+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 1 MMTANEIRESFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK AI AW+ L L Sbjct: 61 RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + + +Y+TV++ D+EA + W K L AD II +DNFW M ETGPCGPC Sbjct: 121 NPQDIYVTVFEGSEEEGIARDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + G +++ + IEIWN+VFMQF +++ LP IDTGM Sbjct: 179 SEIHLDSRSAKEKAEVPGANLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +IQ +++G+KY + V RV+ DHLR+ +F I Sbjct: 239 GFERLVRSLQGKTSNYDTDVFQPVIQEISRLSGLKYGTDEKVDVAMRVVADHLRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP N GYV+RRI+RRA+ YA LG M LLP EMG AYPEL + Sbjct: 299 ADGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LI ++ E++ F +TL++G+ +L+ + +L+G AF+L+DT+G PLD+ + Sbjct: 359 LIGRVMKEEEDSFLRTLEKGISMLNDEMERLKAEGKTMLDGAQAFRLFDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I GL +D F+ +++Q+ RAR + W L+E G F+GYD Sbjct: 419 ICRENGL-QVDAAQFDVEMQKQKERARNA-----AAVENSDWVVLRE--GEQTFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V +K E+V D TPFY E Sbjct: 471 EYECHILRYRQVTQKKNTY----------------------------FELVLDYTPFYGE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G + + + D +++ V+ E + +D R Sbjct: 503 MGGQVGDCGVLVNGEETVDVIDTKRENNQSIHI---VKALPKAPEADFMACVDTDKREAS 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+ATHLL +AL +LG HV Q GS + PD LRFD +H + +T EL+ +E VND+I Sbjct: 560 AANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 Q+LP+ R E+A A GA AL G KY D VRVV S CGG H ST Sbjct: 620 RQDLPLDEHRDTPVEEAKAMGAVALFGEKYGDTVRVVRFGP------SCEFCGGIHARST 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I + IVSESS+ AGIRR+EA+TG+R + ++ L+ + + + ++ G + + Sbjct: 674 GRIGMFKIVSESSVAAGIRRVEALTGKRCEEAMYVLEDTLRGIRNLFN-NAKDLQGVIAK 732 Query: 763 IWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE+ ++ K Q + + + + + ++ +++++ K+++ ++ Sbjct: 733 YMEEHDAMRKEIEKFSAQAVERLKDSLVANAKDVNGLKVVKAVLP-INAEQAKNLVFKVR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875 + I ++ +VG + K + I+ ++D++ NA + R +AK++ GG GGG+PH A Sbjct: 792 EAIPQNLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLIQGG-GGGQPHYA 850 Query: 876 QSGGPNGNKADQAIAGVASF 895 +GG N + A+ Sbjct: 851 SAGGKNLDGISVAVDKAVEL 870 >gi|308177509|ref|YP_003916915.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117] gi|307744972|emb|CBT75944.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117] Length = 896 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 322/919 (35%), Positives = 492/919 (53%), Gaps = 68/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +++FF GH +PS+SL+ DP+L+FT +GMVPF T +E+ Y Sbjct: 1 MKTQEIARRWVDFFVSKGHTAVPSASLVSA-DPSLLFTVAGMVPFIPYLTAREEAPYSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R G D++ VG+T RH TFF+M GNFSFG YFK+ AI AW+LLT Sbjct: 60 TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKKEAIHFAWELLTSSLEDG 115 Query: 118 -FDLDQRRLYITVYDE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LD+ RL++TVY++ D EA ++W+ G+ A++++ DN+W+ + GP GPC Sbjct: 116 GYGLDKERLWVTVYEDGDEKDTEARRIWEDEIGMPAERVVGTGKEDNYWNTGQPGPGGPC 175 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDT 226 SEI++D+G G G + + RY+EIWNLVFMQ+ + + LPK +IDT Sbjct: 176 SEIYYDRGPAY-GMEGGPAVDETRYVEIWNLVFMQYRLSAVRSKTDFDVAGELPKRNIDT 234 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVD 277 G+GLER+A +LQ N Y+ D + ++ + ++ + Y R+I D Sbjct: 235 GLGLERLAMILQGVENMYETDQVRPVLDKAAELASVTYTSTEDPADPNHATDVRLRMIAD 294 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337 H+RSS LI+D + P NEGRGYVLRR++RRA+ RL+G ++ LLP M Y Sbjct: 295 HIRSSLMLISDQVTPGNEGRGYVLRRLIRRAVRAMRLMGVDSEVLPELLPVSRDAMKGVY 354 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGL 396 PE+ I +E+ F +T+ G LD L H ++ L+GD AF L+DT+G Sbjct: 355 PEVEADFERIARIAYAEERAFRRTIASGTTRLDEALGHAKEEGKNLSGDDAFALHDTYGF 414 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ +I GL+ +D F + + EQR+RA+ + +G + ++ + G Sbjct: 415 PIDLTLEIAAEAGLS-VDEPRFRELMNEQRTRAQKDAKAKKAGHADLSVYNKLAEAGNVH 473 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F GYD L G S ++ I++ G++V A GQ++++V + Sbjct: 474 FTGYDTLEG-----------------------ESSIRGIIRDGQLVPFAEQGQEIDLVLN 510 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +TPFYAE+GGQ GD+G GDG L++TDVQ +G+ VH +V G L E + +D Sbjct: 511 ETPFYAESGGQAGDSGLITGDGFVLEVTDVQAPVKGLNVHKVVVREGELPAEALVRTQVD 570 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR HSATHL+H AL +LG +Q GS LRFD + ++ +++A +E Sbjct: 571 AMRRRSGEQAHSATHLVHAALRELLGPTATQAGSFNKAGYLRFDFSWAEALSAAARSEVE 630 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + VN I N VVT M +A GA +L G KY++ VRVV + G S LCGG Sbjct: 631 EVVNLAITSNYQVVTNEMALSEAKKLGAMSLFGEKYSNDVRVVEM----NGDWSRELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV +T I L ++SE+S+ +G RR+EA+ G A H + + L+ +V V Sbjct: 687 THVDTTARIGQLTLLSEASVGSGNRRVEALVGMEAFRHGAAERALVSELSGLFRVPSSQV 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVD-SKELK 810 RV + + + + A+ K Q + + I ++H +D + L+ Sbjct: 747 SERVNDTVAKLKAAEKQIAELKSQAMLAQSAALLEKVVTIGSTRLLAHNAGAIDSADALR 806 Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 ++ L+ K+ S +I+L+G++ + + + E + F A L R + VLGGGG Sbjct: 807 TMALDLRGKLGSEAAVIVLIGVANGRPLVLAVTNDEARANGFKAGALVRTATGVLGGGG- 865 Query: 869 GGRPHMAQSGGPNGNKADQ 887 GG+ MAQ GG + +K D Sbjct: 866 GGKDDMAQGGGQDASKIDD 884 >gi|225017450|ref|ZP_03706642.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum DSM 5476] gi|224949860|gb|EEG31069.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum DSM 5476] Length = 879 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 324/910 (35%), Positives = 512/910 (56%), Gaps = 54/910 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL FF+ GH L S LIP D +L+ NSGM P K F GQE P + VTT Sbjct: 6 LNELREKFLSFFESKGHTRLKSYPLIPQGDNSLLLINSGMAPMKKFFLGQEVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH T+FEMLGNFSFG YFK A + AW+ +TKE +L Sbjct: 66 CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATEWAWEFVTKELELPID 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 R+++++Y +D+EAF++W K G+ I+R+ DNFW + +GPCGPCSE++FD+GE Sbjct: 122 RIWVSIYQDDDEAFEIWTKERGVDPSHIVRMGKEDNFWEIG-SGPCGPCSELYFDRGEDK 180 Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +R++E WNLVF QF + + +IDTGMGLER+A ++QE Sbjct: 181 GCGSPDCRVGCECDRFVEFWNLVFSQFNGDGEGHYEPMEHPNIDTGMGLERLACIMQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D ++++ ++ G+KY+ + V RVI DH+RS++F+I DG++P+NEGRGY Sbjct: 241 NLFEVDTVQNIMNHISEIAGVKYKQDPKVDVCLRVITDHIRSTTFMIGDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + LG +P + ++ + E SAYPEL + I++ +R+E+E F Sbjct: 301 VLRRLLRRAARNGKQLGIRDPFLYKVVDTVIAENKSAYPELEENADYIKKIVRAEEENFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KT+D+G+ LL+ ++ + + +IL+G+ AFKLYDT+G P+D++++I+ +G +D Sbjct: 361 KTIDKGMELLNNIIDSIDSNIESKILSGEQAFKLYDTYGFPIDLIKEIISEQG-IDVDEA 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + + EQ++RAR L + + + ++ T+F+GY+ Sbjct: 420 RFRELMNEQKTRAREAKLNSDTVGWSSENYHITDE--PTEFVGYETYE------------ 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + + I+ + EEA G +V +VFD+TPFYAE+GGQ+GD G + Sbjct: 466 -----------CDAKLLHILTEDGEAEEAKEGDRVNLVFDRTPFYAESGGQVGDRGVFVI 514 Query: 537 DGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + I D QK G +H +V G ++ ++ L+ID R + NH+A HLL Sbjct: 515 GNSVVNILDCQKDPSGQHSLHLGLVMAGSIQKGVTGHLSIDGLKRDATARNHTAAHLLQK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LGSHV Q G + + LRFD H + +T EL ++E VN I + + V T M+ Sbjct: 575 ALRDELGSHVHQAGQLVDSERLRFDFNHFEAMTPQELLNVEQAVNAKILEAVKVTTSEMD 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A GA AL G KY D VRVV D +S LCGGTHV +T ++ L I+SESS Sbjct: 635 IESARAQGAMALFGEKYGDIVRVV-----DADGYSVELCGGTHVDNTSKLGLFKIISESS 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774 AGIRRIEA TG + + + + LKV + + R + + +E + Sbjct: 690 AAAGIRRIEATTGTGVLGLMQEGNLLIAAACGALKVTNPHELPARCKALNDELKAKDRKI 749 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + ++ + ++ V +S + + + L+++ D ++ + + +L Sbjct: 750 DELNQKIASTQMQNVFDTATEVNGVRVISASFNGMTVQALRAMGDRIK-ENPLNVAVLAN 808 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I+ + K +++ V ++ + R +A ++ R A + GG G GGRP A +G + D+A Sbjct: 809 IA-DGKGNLIAVCGKEAVARGAHAGNIVREIAALAGGKG-GGRPDSAMAGVTEIFQIDEA 866 Query: 889 IAGVASFLKK 898 + + S ++K Sbjct: 867 LTQLTSVVQK 876 >gi|150025983|ref|YP_001296809.1| alanyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86] gi|205830094|sp|A6H0Y3|SYA_FLAPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149772524|emb|CAL44007.1| Alanine--tRNA ligase [Flavobacterium psychrophilum JIP02/86] Length = 887 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 319/934 (34%), Positives = 476/934 (50%), Gaps = 85/934 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +L+FF+ GH ++PS+ ++ +DPTLMF NSGM FK F G P + Sbjct: 1 MTSKEIRQQYLKFFESKGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGTPKSPRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + Sbjct: 61 ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 ++ LY++V++ D+EA+ +WK + + D+II DNFW M + GPCGPCS Sbjct: 121 KQNLYVSVFEGSKEDNVPFDQEAWDIWKGL--IDEDRIILGNKKDNFWEMGDQGPCGPCS 178 Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G + + + +EIWN VFM+F ++ LP +DTGMG Sbjct: 179 EIHVDLRTPEEKAQVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDH 278 ER+ LQ KT+NYD D+F LI+ Q+TG KY N + N RVIVDH Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIEKVTQITGYKYTSNEVKNISEEQNKTNIAIRVIVDH 298 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 +R+ +F IADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L ++MG + Sbjct: 299 VRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFITKLVAVLASQMGEFF 358 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PE+ + L+ +R E+ F +TL++GL LLD V++ E+ +G AF+LYDT G P Sbjct: 359 PEIKSQQQLVTNVIREEEASFLRTLEQGLQLLDKVVAETKGKEV-SGAKAFELYDTFGFP 417 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ IL +G +D FN A++EQ++R+RA S + W L T F Sbjct: 418 IDLTALILREKGYE-LDEAGFNAAMQEQKNRSRAA-----SEVFTEDWSVLIPGNIET-F 470 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GYD + RK V G ++V D Sbjct: 471 VGYDKTENDVKITRIRK---------------------------VNSKKDGILYQIVLDN 503 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQ------ITDVQKKAEGIFVHHAIVERGILRTEMSL 571 TPFY E GGQ+GD G + D+ + + ++ E Sbjct: 504 TPFYPEGGGQVGDKGTLVSANDSSDSEQAKQTIDIIDTKKENNLILHFAKQLPENIETGF 563 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 V ++ R S NHSATHL+H AL +ILG+HV Q GS + PD LRFD +H ++ + Sbjct: 564 VAKVNTNLRASTSKNHSATHLMHLALRSILGTHVEQKGSLVNPDYLRFDFSHFSKVSDDQ 623 Query: 632 LKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 L+ +E +VN I L + R + ++A+ GA AL G KY D VR++ S Sbjct: 624 LRQVEASVNAQIEAQLQLTEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFGE------S 677 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGG HV +T +I I+SE ++ AGIRRIEAITG ++ Q+ L + LK Sbjct: 678 KELCGGIHVKNTAQIWHFKILSEGAVAAGIRRIEAITGDAVKAFYTNQENTLSEIKEVLK 737 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVD 805 +++ V + ++ KL+ + + N +I +NF+S + ++ Sbjct: 738 -KPQDILKSVTSLQDDNVKLKKQIEQLLKEKIEGLKNTLVSEFQEINGINFLSKQV-DLS 795 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL 863 K ++ AL + ++L I +E ++ + ++L+ NA + + K + Sbjct: 796 MSSTKDLLQALGSLKPNSFVVLASI-EENMPNIHCYIAKELVAGKGLNANVVIKELGKYI 854 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 G GGG+P A G N + +A+ F+K Sbjct: 855 E-GNGGGQPFFASGKGKNVSGIKEALQKAIEFVK 887 >gi|31793738|ref|NP_856231.1| alanyl-tRNA synthetase [Mycobacterium bovis AF2122/97] gi|121638440|ref|YP_978664.1| alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990934|ref|YP_002645621.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|260205877|ref|ZP_05773368.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85] gi|289575263|ref|ZP_06455490.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85] gi|41018172|sp|Q7TYB1|SYA_MYCBO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830151|sp|A1KLQ3|SYA_MYCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|31619332|emb|CAD94770.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE) (ALANINE TRANSLASE) (ALARS) [Mycobacterium bovis AF2122/97] gi|121494088|emb|CAL72566.1| Probable alanyl-tRNA synthetase alaS [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774047|dbj|BAH26853.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|289539694|gb|EFD44272.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85] Length = 904 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 327/932 (35%), Positives = 482/932 (51%), Gaps = 72/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G E RY+E+WNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRNNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A VLQ+ N Y+ DL + +I +V Y + V +R+I DH R+++ LI Sbjct: 235 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L + V S +L+G AF L+DT+G P+++ ++ Sbjct: 355 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D I F + + EQR RA+A + + + GAT+F G+D LR Sbjct: 415 AETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQ 517 + + I G+ V A GQ+VE+V D+ Sbjct: 474 -----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDR 510 Query: 518 TPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 TP YAE+GGQ+ D G G + R +TDVQK A+ ++VH VE G +++ Sbjct: 511 TPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D RR + HS TH++H AL +LG + Q GS P LRFD P+T + Sbjct: 571 AVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRT 630 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 +E+ N+ + + V T + A A GA AL G Y D VRVV + GG S L Sbjct: 631 QVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLEL 686 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHVS+T +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV Sbjct: 687 CGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPS 746 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSK 807 V RV + E R + + ++ +I +V ++ +S + + Sbjct: 747 EEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAA 806 Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 +L+S++ ++ K+ S ++ L+ + + + D A DL + A + Sbjct: 807 DLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE 866 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+ +AQ G N D A+ V S + Sbjct: 867 -GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897 >gi|145224345|ref|YP_001135023.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] gi|315444677|ref|YP_004077556.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1] gi|205830152|sp|A4TBW4|SYA_MYCGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145216831|gb|ABP46235.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] gi|315262980|gb|ADT99721.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1] Length = 898 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 318/915 (34%), Positives = 477/915 (52%), Gaps = 72/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P + Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+LAW LLT Sbjct: 60 TSVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIELAWSLLTNPVSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL+ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGPCSEI+ Sbjct: 116 GYGFDPERLWATVYLDDDEAIELWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPCSEIY 175 Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMG 229 +D+G G P ++E+ RYIEIWNLVFMQ E+ + + LP+ +IDTGMG Sbjct: 176 YDRGPDYGIDGGPEANED--RYIEIWNLVFMQNERGEGTSKDDFEILGPLPRKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286 +ER+A +LQ N Y+ DL + +I + Y + V +R+I DH R+++ +I Sbjct: 234 VERIACLLQGVDNVYETDLVRPVIDLVAGIAPRGYGQGNHTDDVRYRIIGDHSRTAAIII 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGYVLRR++RR + A+LLG +P+M L+ + EMG +YPEL+ Sbjct: 294 GDGVTPGNEGRGYVLRRLLRRIIRAAKLLGVEQPIMGELMATVRDEMGPSYPELVTDFER 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F +TL G L + K +L+GD AF L+DT G P+D+ ++ Sbjct: 354 INRIAIAEETAFNRTLTAGSRLFEDAAETTRKAGSTVLSGDDAFTLHDTFGFPIDLTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL+ +D F + EQR RA+A + T+ + G T+F G+D L Sbjct: 414 AAEAGLS-VDEEGFRGLMAEQRRRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDEL- 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQT 518 + + I G V Q +VE++ +++ Sbjct: 472 ----------------------TTEARILGIFVDGRRVPVVSHVQGGDAPGRVELILNRS 509 Query: 519 PFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 PFYAE+GGQ+ D G G + +TDVQK A+ ++ H VE G ++V Sbjct: 510 PFYAESGGQIADEGTVTGTGASQTAKAAVTDVQKIAKTLWAHRITVESGEFVEGDTIVAA 569 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D + R + HS TH++H AL +LG + Q GS P LRFD ++ + Sbjct: 570 VDPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDDQRSQ 629 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE+ N+ + + V E A + GA AL G Y D VRVV + GG S LC Sbjct: 630 IEEVTNEAVEADYEVHNFTTELEKAKSMGAMALFGENYPDEVRVVEI----GGPFSIELC 685 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTHV S+ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV Sbjct: 686 GGTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSD 745 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKE 808 V RVE + E R + + +L +I + ++ ++ + + + Sbjct: 746 EVPARVENLVERLRAAEKELDRLRLVNARAAAANAAAGAEQIGGIRLVAQRMAGGISAGD 805 Query: 809 LKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 L+S++ ++ K+ S ++ L+ + + ++ V + DR A DL ++ + Sbjct: 806 LRSLVGDIRGKLGSDPAVVALISEADDDTVPFVVAVNQAAQDRGLRANDLVKVLGAAVN- 864 Query: 866 GGGGGRPHMAQSGGP 880 G GGG+ +AQ G Sbjct: 865 GRGGGKADLAQGSGK 879 >gi|289167595|ref|YP_003445864.1| alanyl-tRNA synthetase [Streptococcus mitis B6] gi|288907162|emb|CBJ21996.1| alanyl-tRNA synthetase [Streptococcus mitis B6] Length = 872 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESHF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNTEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTADELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKTPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ + + K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENTELKEKAASAAAGDIFKDVKEVNAHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|225860836|ref|YP_002742345.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|225727156|gb|ACO23007.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|327389569|gb|EGE87914.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA04375] Length = 872 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G + + FYAE G Sbjct: 462 ----------------NHNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|307701921|ref|ZP_07638930.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261] gi|307616736|gb|EFN95924.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261] Length = 872 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 330/918 (35%), Positives = 496/918 (54%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILGSH +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|317124715|ref|YP_004098827.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043] gi|315588803|gb|ADU48100.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043] Length = 890 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 329/924 (35%), Positives = 505/924 (54%), Gaps = 64/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L FF+ GH ++PS+ L+ +DP L+F N+GMVPFK F GQE P Y Sbjct: 1 METAEIRRRWLSFFESRGHTVVPSAPLV-HDDPNLLFVNAGMVPFKPYFLGQETPPYARA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE A+ LAW+L+T Sbjct: 60 TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAVALAWELVTTPQSQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D++ LY +VY ED+EA +WK+++GL D+I+R+ DN+W+M GP GPCSEI Sbjct: 116 GYGFDEKDLYASVYHEDDEAIAIWKRVAGLPDDRIVRLGKKDNYWNMGVAGPGGPCSEIL 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 D+G + + RY+E WNLVFMQ + + + LPK +IDTGMGL Sbjct: 176 IDRGPEFGADRDWEAGD--RYLEFWNLVFMQDDLSAVRAKDDFDIAGPLPKRNIDTGMGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I A+E+++G +Y + V RV+ DH+RS+ LI D Sbjct: 234 ERVAYLLQGVDNLYEIDEVFPVIAAAEELSGRRYGANLEDDVRFRVVADHVRSALMLIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RRA+ RLLG P + HLLP +M ++YPEL + I Sbjct: 294 GVTPGNEGRGYVLRRLIRRAVRSMRLLGVDAPTLEHLLPVSKDQMRASYPELERGFGRIS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E++ F +TL G +LD + + L+G AF+L+DT+G P+D+ ++ Sbjct: 354 QVAYAEEDAFRRTLTAGTTILDVAVTKAKSSGSATLSGSEAFQLHDTYGFPIDLTLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGYDLLR 464 +GL +D F + + EQR RA+A + + ++ + + G +F GYD + Sbjct: 414 EQGL-NVDEAGFRRLMAEQRDRAKADARSKKMAHGDVSVYRQVADSLGRDVEFTGYDEVV 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V+ +++ GE+V A +G+++EVV D+TP YAE+ Sbjct: 473 SD-----------------------SRVRGLIRGGELVSTAHAGEEIEVVLDRTPLYAES 509 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + +G +++ DVQK G+ VH A V G T +D RR + Sbjct: 510 GGQLADRGRIRLANGALIEVRDVQKPINGLIVHRATVLEGEAVTGDDAEAVVDVVRRRSV 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 S H+ATH++H AL LG +Q GS +P LRFD P+ + IE VN ++ Sbjct: 570 SRAHTATHMVHQALREELGETATQAGSENSPGRLRFDFKAQSPVPLEAMADIEAKVNSVL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L V +M+ ++A GA AL G KY +RVRVVS+ G S LCGGTH G Sbjct: 630 LDDLAVTADVMSLDEARRMGALALFGEKYGERVRVVSI-----GDWSIELCGGTHALRVG 684 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ ++ ++ E+SI +G+RR+EA+ G A +HL + + L LKV + R+ I Sbjct: 685 QLGVVKLLGEASIGSGVRRVEALVGSDAYTHLAREAAIVGQLTDQLKVRTEELPQRIASI 744 Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVMDALQ 817 + ++ + A K + + IA V F+SH V + +L++++ ++ Sbjct: 745 LSKLKEAEKEIAAVKQAQVLGAAPGLVATARDIAGVTFVSHDAGDGVTADDLRALVLEVR 804 Query: 818 KKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 +++ + ++ + +S + ++ A R +A+VLGGGG GG+ + Sbjct: 805 RRLGTDRPSLVSMAAVSNGRPIVIVATNDRAREAGLKAGLFVRTAAQVLGGGG-GGKDDI 863 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ GG + + A+ V L + Sbjct: 864 AQGGGTDASMVSAALGAVEQQLHQ 887 >gi|87300751|ref|ZP_01083593.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701] gi|87284622|gb|EAQ76574.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701] Length = 896 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 333/914 (36%), Positives = 496/914 (54%), Gaps = 59/914 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL F++ GH + S+SL+P +DPT++ T +GM+PFK +F GQ +P T Sbjct: 17 SGAEIREAFLAFYEARGHRRMASASLVP-DDPTVLLTIAGMLPFKPVFLGQAEPPSPRAT 75 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK A+ AW+L TK F LD Sbjct: 76 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTEAMTWAWELATKVFGLDP 131 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ +D+EA +W+ G+ +I+R+ DNFW TGPCGPCSEI++D Sbjct: 132 KHLVVSVFRDDDEAAVIWRDTVGVDPRRIVRLGEADNFWVSGPTGPCGPCSEIYYDFKPE 191 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQF + + L +IDTG+GLERMA +LQ N Sbjct: 192 L-GVEHLDLEDDSRFIEFYNLVFMQFNRDAEGNLTPLENRNIDTGLGLERMAQILQGAAN 250 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI+ + + G+ Y + + +VI DH R+ + LIADG+ +N GRGY Sbjct: 251 NYETDLIYPLIETAATLAGVNYRQLDARGQTSLKVIGDHSRAITQLIADGVTASNLGRGY 310 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG T P + + A M AYP+L++ + I L E+ RF Sbjct: 311 ILRRLLRRVVRHGRLLGITTPFLTAMGEAAIALMVDAYPQLVERRDAIMAELAREEARFL 370 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VLS ++G+ AF+LYDT+G PL++ ++I GL +D+ F Sbjct: 371 ETLERGEKLLAEVLS--AGPSQISGEQAFELYDTYGFPLELTEEIAEEHGL-AVDLAGFE 427 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR RA+A S+ L T + ++ E+ AT F GY+ L Sbjct: 428 AAMEAQRQRAKAASVRLDL-TLQGAIEAMAEQLPATDFRGYEALEHP------------- 473 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC------ 533 S V A+V GE + A +G V++V D TPFY E+GGQ+GD G Sbjct: 474 ----------SQVMALVVNGEPAQGARAGDAVQIVLDSTPFYGESGGQIGDRGVLAGGAP 523 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 A + + + + VHH +ERG L ++ +D RR++ +H+ATHL Sbjct: 524 GAGAEAGVIVRIEAVSHQRKLIVHHGRIERGELALGDTVTALVDRACRRRVQAHHTATHL 583 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ ++Q GS + + LRFD I+ +L+ IE+ +N IA + R Sbjct: 584 LQAALKQLVDPSIAQAGSLVDFERLRFDFHCPHAISPEDLERIEERINGWIADAHALEVR 643 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E A ++GA A+ G KY D VRVV V S LCGGTHV++T EI L IVS Sbjct: 644 EMELERARSAGAVAMFGEKYADIVRVVDVPG-----VSMELCGGTHVANTAEIGLFRIVS 698 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AGIRRIEA+ G +L +D +++L KV G ++ RV + +E + Sbjct: 699 ESGVAAGIRRIEAVAGPAVLDYLKERDTVVRALGDRFKVQPGEILERVSGLQDELKAASR 758 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A + +L + S ++ + + V+ L++ LQ+ + S ++ Sbjct: 759 ALAAARSELALARASALATGALEVGAFRVLVARLDGVEGAALQTAAQQLQEGLGSAAAVV 818 Query: 828 VGI----SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +G + K ++ +++ A + AK GGGG GGRP +AQ+GG + Sbjct: 819 LGGLPAPEEPAKLVLVAAFGAEVIAAGPKAGSFIAVVAKRCGGGG-GGRPQLAQAGGRDA 877 Query: 883 NKADQAIAGVASFL 896 D A+ + L Sbjct: 878 ASLDPALEQARADL 891 >gi|332074964|gb|EGI85436.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA41301] Length = 872 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G + + FYAE G Sbjct: 462 ----------------NHNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|307127048|ref|YP_003879079.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] gi|306484110|gb|ADM90979.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] Length = 872 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T+ +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|182684342|ref|YP_001836089.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] gi|205830229|sp|B2IQK0|SYA_STRPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|182629676|gb|ACB90624.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] Length = 872 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T+ +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|313890705|ref|ZP_07824330.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120806|gb|EFR43920.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 873 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 318/919 (34%), Positives = 482/919 (52%), Gaps = 68/919 (7%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKTLTSAEIRQMWLDFWKSKGHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y D +++ W + G+ +I + +NFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPADTDSYNRWIAL-GVDPSHLIPL--EENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+G E +RYIEIWN+V QF K E LP +IDTG Sbjct: 173 FDRGPAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPKVPRSEYKELPSKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +IQ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIQEVEKLSGKTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG TE + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMTSYYPEILEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLTQLKEAGKDTLEGKDIFKLYDTYGFPIELTEEMA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G +D F A++EQ+ RARA + GS + +L ++F Sbjct: 413 EDAGYR-VDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEPSEF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + I+ E E GQ +VFD+TPFYAE G Sbjct: 462 ----------------SYQEETLDAKLSVIIVDNERSEMVSEGQ-ALLVFDRTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + +KA H + L L ID++ R + Sbjct: 505 GQVADHGLIKNAAGDVLAKVVDVQKAPNGQALHTVEVLASLSINAIYTLDIDHKRRYAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHKVIGQHATQAGSLNEETFLRFDFTHFEAVTAEELRRIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L V T + + A + GA AL G KY VRVV++ G +S+ LCGGTH+ +T E Sbjct: 625 NALSVTTVETDVDTAKSMGAMALFGEKYGKLVRVVTI-----GDYSAELCGGTHLGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TGQ+A +++ LK +A+ LK Q V +V + Sbjct: 680 IGLFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R LQ + + K + K +++ ++ D+ L++ D ++ Sbjct: 740 SEQVRDLQKENHELKEKAAAAQAGDLFKDVKKANGHTYIATEVAVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV E K +VL+ + +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGE-KVNVLVASRDKA---VHAGNLIKSLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFLK 897 G + + + V LK Sbjct: 855 GSDAGQIQALLLAVPELLK 873 >gi|168491286|ref|ZP_02715429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] gi|183574430|gb|EDT94958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] Length = 872 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|323344880|ref|ZP_08085104.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269] gi|323094150|gb|EFZ36727.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269] Length = 873 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 321/921 (34%), Positives = 501/921 (54%), Gaps = 73/921 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKQPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L + L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVEVLHL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+T+++ D+EA + W K L D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTIFEGSPEENIPRDDEAARYWAK--HLPTDHIIEGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 +EI D + + G +++ + IEIWN+VFMQF ++ +LP IDTGM Sbjct: 179 TEIHVDSRTPEEKAKVPGRELVNKDNPQVIEIWNVVFMQFNRKADGSLELLPMHVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLI 286 G ER+ +LQ K +NYD D+F+ +I+ +++G KY + + RV+ DHLR+ +F I Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIREISRLSGKKYGEHEDIDVAMRVVADHLRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ Y+ L E M LLP L EMG+AYPEL + Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYSYTFLDQKEAFMYKLLPVLVREMGAAYPELSAQQE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403 LI ++ E++ F +TL++G+ LL+ ++ L L+G AF+L+DT+G PLD+ + Sbjct: 359 LIARVMKEEEDSFLRTLEKGINLLNAAMNELKAAGKNCLDGAQAFRLFDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I G +D F++ +E+Q++RAR ++ W L++ G QF+GYD Sbjct: 419 ICRENGFT-VDEKQFDKEMEKQKARARNAAV-----VENGDWVVLRK--GEQQFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V +K E+V D TPFY E Sbjct: 471 EHECHILRYRQVTQKKNTF----------------------------FELVLDYTPFYGE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G + +++I D +++ V++ + +D + R Sbjct: 503 MGGQVGDQGVLVNGNEKVEIIDTKRENNQSIHI---VKQLPKEPSADFMACVDTEKRDAS 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+ATHLL +AL +LG HV Q GS ++PD LRFD +H + +T E++ +E VN++I Sbjct: 560 AANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERMVNEMI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 Q+ P+ R E+A GA AL G KY D+VRVV S CGG H ST Sbjct: 620 RQDFPLDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFGP------SCEFCGGIHAKST 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I + I+SESS+ AGIRR EA+TG+ ++ LK + + + ++ G + + Sbjct: 674 GRIGMFKIISESSVAAGIRRFEAMTGKMCEETYYALEDTLKDIRTLFN-NAKDLRGVIGK 732 Query: 763 IWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE + ++ HA+ + E + I + + I ++ K ++ +++ Sbjct: 733 YIEEHDLMKKDIEKFHAQTVERTKDEVIKRATIVNGTTVVRSILPIEPSAAKDLVFKIRE 792 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 I ++ ++G + K + +++++D++ NA + R +AK++ GG GGG+PH AQ Sbjct: 793 AIPQNLVCVIGSTVGDKPLLSVMLSDDMVKEHHLNAGQMIREAAKLIQGG-GGGQPHYAQ 851 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG N + + A+ V + Sbjct: 852 AGGKNIDGINAAVDKVIALAN 872 >gi|281492315|ref|YP_003354295.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] gi|281375979|gb|ADA65470.1| Alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] Length = 872 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 321/915 (35%), Positives = 474/915 (51%), Gaps = 67/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI AW+LLT + F+ Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFE 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LYIT Y D++ + W + G+ ++ I DNFW + GP GP +EIFFD+ Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF E LP+ +IDTGMGLE Sbjct: 176 GEVYDPEHMGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290 RM ++Q N+D DLF +I+ E+++G Y + ++ +VI DH+RS SF I DG Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +T+D G L+D +L +L + L G F+LYDT+G P+++ +++ Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKSEGKDRLEGADIFRLYDTYGFPVELTEELAEDE 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G ID F A++ Q+ RARA + GS + +L ++F+ Y+ Sbjct: 416 GFK-IDHEGFKVAMKAQQERARAAVVKGGSMGAQN--ETLSSIEVESEFL-YED------ 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + +Q EIV+E K ++VFD TPFYAE GGQ+ Sbjct: 466 -----------------KTAQGKLLVAIQDDEIVDEVSG--KAQLVFDVTPFYAEMGGQV 506 Query: 529 GDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G ++ + A H++ L+ S L ID + R + NH Sbjct: 507 ADHGVIKDAEGQVVANVLDVQHAPHGQNLHSVETLSPLKVGESYTLEIDKERRAAVVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH +T EL IE VN++I Q+L Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + A GA AL G KY VRVV + G +S LCGGTH +T EI L Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G+RRI A+TGQ+A + L +A+ +K Q V+ +V + +E Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATLVKAPQTSQVLAKVTSLQDE 741 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q + +L + +NF++ ++ D+ L+++ D ++K Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV EK + ++ + D A +L + A + G GGG+P MA +GG Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 857 AAGIPELLAAVAEKL 871 >gi|24379123|ref|NP_721078.1| alanyl-tRNA synthetase [Streptococcus mutans UA159] gi|41018215|sp|Q8CWY0|SYA_STRMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24377026|gb|AAN58384.1|AE014908_10 putative alanyl-tRNA synthetase (alanine--tRNA ligase) [Streptococcus mutans UA159] Length = 872 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 323/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ H + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FDL + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIE-CGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE G E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L+ L + L G F+LYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA+ + GS + +L + F Sbjct: 413 EDAGFK-IDHQGFQAAMKEQQERARANVVKGGSMGMQN--ETLSNITEKSTF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ + +E GQ V +VF +TPFYAE G Sbjct: 462 ----------------NYEKEALDSSLSVIIADNKRIEAVSEGQ-VLLVFSETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + G L + L ID++ R ++ Sbjct: 505 GQVADHGLIKNDKGDTVARVTDVQKAPNGQALHTVDVLGSLSVGTTYHLEIDHERRNRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G+H +Q GS + LRFD TH + +T EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + +PV T + + A GA AL G KY VRVVS+ G +S LCGGTH+ +T E Sbjct: 625 KAIPVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LK +A+ LK Q V +V + Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIATTLKAPQMNQVANKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ KLQ +A+ K + ++ + +++ + D+ L++ D ++ Sbjct: 740 QDQLHKLQKENAELKEKAAAVAAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADKWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV S KK +VL+ +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVA-SIGKKVNVLVASK---SKDIHAGNLIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + + IA VA L Sbjct: 855 GSDASAIKDLIAAVAENL 872 >gi|325268831|ref|ZP_08135456.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608] gi|324988803|gb|EGC20761.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608] Length = 888 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 323/937 (34%), Positives = 492/937 (52%), Gaps = 90/937 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEAAGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D G +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYSHTFPEGPNGEGVNEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAF 388 EMG+AYPEL + LI ++ E++ F +TLD+G+ LL+G + L + L+G AF Sbjct: 359 REMGAAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGRKELDGKEAF 418 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + I G +D FN+ + +Q++RAR ++ W L Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAKQKARARNAAV-----VENGDWEVL 472 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 +E G +F+GYD + RKV +K Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + + + D +++ V++ E Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDTKRENNQSIHI---VKQLPKNVE 559 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L + Sbjct: 676 --SCEFCGGIHAASTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802 + ++ + EE ++ K + Q + V+ + ++ Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVEMVDGVHVIKAVLP 792 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860 VD K ++ +++ + ++ ++G E + + I++++D++ NA + R +A Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKIIREAA 851 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 K++ GG GGG+PH AQ+GG + + A+ V + Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELIN 887 >gi|293365697|ref|ZP_06612406.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307703642|ref|ZP_07640584.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037] gi|291316065|gb|EFE56509.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307623049|gb|EFO02044.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037] Length = 872 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 486/918 (52%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y ED++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G + ++S L ++ G FKLYDT+G P+++ +I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVSDLKAKGQSVIAGSDVFKLYDTYGFPVELTAEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++AS LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV K ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGYKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|227488808|ref|ZP_03919124.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542195|ref|ZP_03972244.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091230|gb|EEI26542.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227182024|gb|EEI62996.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] Length = 889 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 325/918 (35%), Positives = 488/918 (53%), Gaps = 61/918 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60 IR F + F GH +PS+SLI +DPTL+F N+GMVPFK F GQ+ P ++ Sbjct: 1 MQTHEIRERFTKHFVDAGHTPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQNPPFENG 59 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTGSQD 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSE Sbjct: 116 EGGYGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMADNYWSMGIPGPCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228 I++D+G G G + RY+E+WNLVFMQ E+ N + LPK +IDTGM Sbjct: 176 IYYDRGPEY-GKDGGPVADDNRYLEVWNLVFMQNERGEGTGKDNFEILGPLPKKNIDTGM 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFL 285 G+ER+A +LQ N Y+ DL + +I A+E++TG Y + + RVI DH R++ + Sbjct: 235 GVERIACILQGVDNVYETDLLRPVIDAAERLTGSTYGEGSHEDDIRFRVIADHSRTAMMI 294 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG+ P NEGRGY+LRR++RR + ARLLG M + + M +YPE+ +A+ Sbjct: 295 ILDGVTPGNEGRGYILRRLLRRIIRSARLLGAKGNTMETFITTIMDTMTPSYPEIEKARE 354 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I +E++ F +TL+ G L + +S ++G+ AF L+DT+G P+D+ + Sbjct: 355 RILTVAVNEEKAFLRTLESGTELFEQEVSAVKGAGKTEISGEKAFTLHDTYGFPIDLTLE 414 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + +GL +D F+ + EQ++RA+A + G + + T+FIGYD L Sbjct: 415 MAREQGLT-VDEEGFHSFMAEQKARAKADNQAKKHGAADLTVYREFVDNHPTEFIGYDQL 473 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G S V +V GE + A G +VEV+ + TP YAE Sbjct: 474 EG-----------------------ESPVIGLVAGGEKIHSAKEGDEVEVIVEATPMYAE 510 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQLGD G L + DVQK + +++H + V G + L +D Q R Sbjct: 511 AGGQLGDRGTMTIGDATLNVNDVQKIGKKLWLHKSTVTAGGFEVGDTAALHVDEQWRHAA 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 HSATHL+H AL LG Q GS P LRFD +++ +T +L+ IE N+ + Sbjct: 571 RQAHSATHLIHAALRQTLGPTAVQAGSMNKPGYLRFDFNYAQALTPKQLEEIERITNEAV 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + V T M E+A A GA AL G Y D VRVV + GG S LCGGTHV+ + Sbjct: 631 DTDWTVNTNEMPLEEAKAMGAMALFGENYGDIVRVVEI----GGPFSMELCGGTHVARSA 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + ++ ESS+ +G+RRIEA +G + S+L + + LA+ LK ++ R+ ++ Sbjct: 687 QIGPVAVLGESSVGSGVRRIEAYSGLNSFSYLSKERSLAEGLATALKTPSDDLPERIAQL 746 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817 E+ + + + + + S K ++ + E V +K+L+++ L Sbjct: 747 TEKLKAAEKEIENLHAKALADRVGALVDSAKKAGSFELIAENLGETVGAKDLRAMAQDLA 806 Query: 818 KKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ S +++L G K + + A D+ ++ + +GG G GG+P++A Sbjct: 807 NRLGSCSAVVVLGGSQGGKAPFAVAATAAAVDAGIKAGDVVKVIGEHVGGKG-GGKPNLA 865 Query: 876 QSGGPNGNKADQAIAGVA 893 Q G N A V Sbjct: 866 QGSGSNPAGFTAAFDAVT 883 >gi|306829747|ref|ZP_07462936.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249] gi|304428098|gb|EFM31189.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249] Length = 872 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 487/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y ED++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G + +++ L ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++AS LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV K ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGYKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|281423902|ref|ZP_06254815.1| alanine--tRNA ligase [Prevotella oris F0302] gi|281401990|gb|EFB32821.1| alanine--tRNA ligase [Prevotella oris F0302] Length = 887 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 317/936 (33%), Positives = 485/936 (51%), Gaps = 89/936 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59 M + +R ++ +FF+ GH+++ S+ ++ +DPTLMFTN+GM +K+I G + P Sbjct: 1 MMTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L Sbjct: 61 RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLH 120 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L+ LY+TV++ D+EA W K + AD II +DNFW M +TGPCGP Sbjct: 121 LNPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178 Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 C+EI D + + G +++ + IEIWN+VFMQ+ ++ LP IDTG Sbjct: 179 CTEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272 MG ER+ +LQ+K +NYD D+F+ +I+ E ++G KY + Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAM 298 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E + LLP L Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVR 358 Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFK 389 EMG AYPEL + LI ++ E++ F +TL++G+ LL+G + L L+G AF+ Sbjct: 359 EMGQAYPELPAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTELDGTSAFR 418 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 L+DT+G PLD+ + I G +D FN+ + +Q++RAR ++ W ++ Sbjct: 419 LFDTYGFPLDLTELICREHGYT-VDEKGFNEEMAKQKARARNAAV-----VENGDWEVIR 472 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E G F+GYD + + RKV +K Sbjct: 473 E--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF--------------------------- 503 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 E+V D TPFY E GGQ+GD G + + ++I D +++ V++ + Sbjct: 504 -YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDTKRENNQSIHI---VKQLPKDLQA 559 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + +D + R + NH+ATHLL +AL +LG HV Q GS + P LRFD +H + +T Sbjct: 560 EFMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTD 619 Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 EL+ +E VN +I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 EELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP----- 674 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S CGG H STG I I+SESS+ AGIRRIEA+TGQ + + + L S Sbjct: 675 -SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSM 733 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISE 803 + ++ +++ E+ +++ K + Q + V + ++ Sbjct: 734 FN-NSKDLKATLKKFIGEHDEMRKEIEKFQAQAVERTKEELLKRAQNVNGVQVIKAVLP- 791 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAK 861 ++ K + L++ I +++++G + K + ++ ++D++ NA + R +AK Sbjct: 792 LEPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIREAAK 851 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ GG GGG+PH AQ+GG N + A+ V Sbjct: 852 LIQGG-GGGQPHYAQAGGKNLDGISAAVDKVIELAN 886 >gi|239939940|ref|ZP_04691877.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] Length = 868 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 327/902 (36%), Positives = 491/902 (54%), Gaps = 62/902 (6%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PS+SLI +DPTL+ +GMVPFK F G+ KP VT+VQKCVR D++ VG+ Sbjct: 1 MPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSVQKCVRT----PDIEEVGK 55 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137 T RH TFF+M GNFSFG YFKE AIQLAW+ LT + LD +L+ITVY +D+EA Sbjct: 56 TTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYGLDPEKLWITVYLDDDEAE 115 Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197 ++W+ G+ A++I R+ DNFWSM GPCGPCSEI +D+G G G + ERY Sbjct: 116 QIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDRGPEF-GVEGGPAVNDERY 174 Query: 198 IEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGLERMATVLQEKTNNYDIDLFKH 251 +EIWNLVFMQ+E+ + P +IDTG+GLER+A +LQ N Y+ D + Sbjct: 175 VEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERLAMILQGVQNMYETDTLRV 234 Query: 252 LIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 ++ + ++TG++Y N V+ RV+ DH+R+S LI DG+ P NEGRGYVLRRIMRRA+ Sbjct: 235 VMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGDGVTPGNEGRGYVLRRIMRRAI 294 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 RLLG T ++ L+ + MG YPELI + IE +E+ F K L G +L Sbjct: 295 RNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVALAEEAAFLKALKGGTNIL 354 Query: 370 DGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427 + + + ++L GD AF L+DT G P+D+ ++ +GL+ +D F + ++EQR Sbjct: 355 ETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQGLS-VDEDGFRRLMQEQRD 413 Query: 428 RARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 +A+A + +G + + + + GAT+F GY L G Sbjct: 414 KAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAG--------------------- 452 Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITD 545 S + ++ G A G +VEVV D+TPFYAE GGQL DTG + G +++ D Sbjct: 453 --ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGGGQLADTGRIRLDTGAVIEVRD 510 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 VQK G+ VH +V+ G + + +ID RR ++ HSATHL H AL LG Sbjct: 511 VQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAHSATHLTHQALRDALGPTA 570 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS +P RFD + L +E +N+++++ L V +M+ ++A GA Sbjct: 571 AQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSRELDVQAEVMSIDEAKKQGAI 630 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 A G KY +RVRVV++ G S LCGGTHV +T ++ L+ ++ ESSI +G+RRIEA Sbjct: 631 AEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGLVKLLGESSIGSGVRRIEA 685 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-- 783 + G A + L + + L +K + ++ + + + + K + + + Sbjct: 686 LVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGMLGKLKDAEKEIEKFRAEKVLAA 745 Query: 784 ---EDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSG---IIMLVGISKEKKA 836 S + V ++ + + +L+ ++ ++ +IQ G ++ L + + Sbjct: 746 AAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRGRIQGGRPAVVALFTTANGRPL 805 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +V+ A DL R +AK LGGGG GG+P +AQ GG N A+A V + Sbjct: 806 TVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVAQGGGTNPAAIGDAVAAVERLV 864 Query: 897 KK 898 + Sbjct: 865 SE 866 >gi|168487382|ref|ZP_02711890.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] gi|183569764|gb|EDT90292.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] Length = 872 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|302345784|ref|YP_003814137.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845] gi|302149231|gb|ADK95493.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845] Length = 887 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 322/935 (34%), Positives = 490/935 (52%), Gaps = 90/935 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 TDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVLH 120 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 LD + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCGP Sbjct: 121 LDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGP 178 Query: 172 CSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSEI D G +++ + IEIWN+VFMQF ++ L IDTG Sbjct: 179 CSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTG 238 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272 MG ER+ ++Q K +NYD D+F +I E+++G KY + Sbjct: 239 MGFERLVRLMQGKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAM 298 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVR 358 Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFK 389 EMG+AYPEL + LI ++ E++ F +TL++G++LL+G + L L+G AF+ Sbjct: 359 EMGTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQLDGKEAFR 418 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 L+DT+G PLD+ + I G +D FN+ +E+Q++RAR + W L+ Sbjct: 419 LFDTYGFPLDLTELICAENGYT-VDEKQFNEEMEQQKARARNA-----AAVENGDWEVLR 472 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E G +F+GYD + RKV +K Sbjct: 473 E--GEQEFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 E+V D TPFY E GGQ+GD G + + + + D +++ V+ E Sbjct: 504 -YELVLDYTPFYGEMGGQVGDQGVLVSEDETINVIDTKRENNQSVHI---VKELPKNLEA 559 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 DFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITD 619 Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 EELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFGP----- 674 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L S Sbjct: 675 -SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKSM 733 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISE 803 + ++ + + EE ++ + Q + V+ + ++ Sbjct: 734 FN-NAKDLKAVLTKFVEENDSIKKELESFRAQAVSRAAKNMVEHAETVNGVHIVKTVLP- 791 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861 +D K ++ +++ + ++ ++G E + + I++++D++ + NA + R +AK Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYDLNAGKIIREAAK 851 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ GG GGG+PH AQ+GG N + A+ V + Sbjct: 852 LIQGG-GGGQPHYAQAGGKNADGIRSAVDKVIELI 885 >gi|124024771|ref|YP_001013887.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] gi|205830178|sp|A2BZG2|SYA_PROM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123959839|gb|ABM74622.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] Length = 886 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 329/907 (36%), Positives = 500/907 (55%), Gaps = 53/907 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 IR F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++ T+ Sbjct: 17 DEIREAFINFFVQHNHQKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRATSS 75 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ + Sbjct: 76 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNPQN 131 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + I+V+ ED EA ++WK++ G+ A++IIR+ DNFWS TGPCGPCSE++FD + Sbjct: 132 IVISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPEL- 190 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L IDTGMGLERMA +LQ+K+NNY Sbjct: 191 GSDEIDLEDDSRFIEFYNLVFMQYNRDLEGNLEPLANCHIDTGMGLERMAQILQKKSNNY 250 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LI+A+ + ++Y N + ++I DH R+ + LI DG+ +N GRGY+L Sbjct: 251 ETDLIFPLIKAAALLAQLEYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGYIL 310 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G +P + L M +AYP+L++ K +I L+ E+ RF +T Sbjct: 311 RRLIRRMIRHGRLVGIVQPFLPQLAEMAIELMKNAYPQLLEKKKIILNELKIEESRFLET 370 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL + SH + ++++G AF+LYDT+G PL++ ++I +G +DI F Sbjct: 371 LERGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKG-ISVDINGFENE 427 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + +QR RA+ S+ + I + + T+F GY+ L Sbjct: 428 MAKQRKRAKEASVSIDLTEEGSIEREIS-LFDETRFEGYEKLE----------------- 469 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 +S V I + E V++AV G V+++ ++TPFYAE+GGQ+GD G + + Sbjct: 470 ------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGIITSQDLEV 523 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + +K + IF+H IV G+L S+ + + R++ + NH+ATHLL AL + Sbjct: 524 -SVENVRKKKNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKLSI 582 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 S VSQ GS ++ LRFD KP+T EL+ +E +N I ++ P+ + M ++A+A Sbjct: 583 DSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEVRINQWINEDHPIQIKTMPIKEAMA 642 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA A+ G KY D V D S LCGGTHV+ T ++ I++E+ I +GIR Sbjct: 643 AGALAMFGEKYGDVV-----RVVDVPGVSMELCGGTHVTRTSQLGTFKIINETGIASGIR 697 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEAI G + +D +K L+ KV +V RV + E + K K L Sbjct: 698 RIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKNDL 757 Query: 782 NVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI----SK 832 + + + + VD L+S +L + ++ G Sbjct: 758 ALAKALGLASYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQEI 817 Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K + + DL+ D +A AK+ GGGG GGRP++AQ+GG D A+ Sbjct: 818 DNKLVFVAAFSPDLVSDGLHAGKFISGVAKMCGGGG-GGRPNLAQAGGSQPQSLDLALEK 876 Query: 892 VASFLKK 898 L + Sbjct: 877 ANENLTQ 883 >gi|83596048|gb|ABC25406.1| alanyl-tRNA synthetase [uncultured marine bacterium Ant39E11] Length = 868 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 324/916 (35%), Positives = 466/916 (50%), Gaps = 75/916 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR FL FF GH ++ S+ L+ +D +LMF N+GM PFK+IFTG + + V Sbjct: 1 MTASQIRQAFLNFFANKGHTIVHSAPLVTKDDSSLMFVNAGMNPFKDIFTGAKPASHSRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT + LD Sbjct: 61 ADSQKCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKQEAIDWAWELLTDVYQLD 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T+++ D+EA W K L AD+I+ +DNFW M ETGPCGPCS Sbjct: 121 PERLYVTIFEGDKGDGLALDDEAKSHWLK--HLPADRILNGNKSDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + IE+WNLVFMQ+++ LP +DTGMG Sbjct: 179 EIHIDLRPEKERKQKDGATLVNMDHPQVIEVWNLVFMQYQRMADGSLVDLPSQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ ++ K++NYD D+F IQ E ++G Y + V RVI DH+R+ F IA Sbjct: 239 FERLVRAIEGKSSNYDTDVFAPYIQRLESMSGRTYGKDESVDVAMRVIADHVRAVGFAIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y +L + EP + L+P + MG A+PEL + L Sbjct: 299 DGQLPSNTGAGYVIRRILRRAVRYGYSVLQFKEPFIARLVPDMVENMGKAFPELKAQQTL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + + E++ F +TL GL LD + + L G F+LYDT+G PLD+ I Sbjct: 359 MTQVIEEEEQAFLRTLASGLKRLDAAMKE---GKPLMGKQCFELYDTYGFPLDLTALICK 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G +D F++A+ EQ+ R++ W + G QF+GYD Sbjct: 416 EKG-IVLDEKGFHEAMAEQKGRSKVAG-----AQKVGDWVEVAPGIGD-QFVGYDQYTTE 468 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RKV G +VV TPFY E GG Sbjct: 469 SKLLRYRKVSN----------------------------AKGDFTQVVIQPTPFYPEGGG 500 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G I R+++ + +A I AI+ + ++ ID R+ + N Sbjct: 501 QVGDRGWLIMGKDRIEVLNCSSEAGAILHLVAIM---PAKPTAAVKAVIDEGKRKASAQN 557 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL ILG HV Q GS ++ + LRFD +H + I + EL +IE +V+ I Q+ Sbjct: 558 HSATHLLHKALRDILGVHVEQRGSFVSDEYLRFDFSHFQRIAAKELMAIESHVSTAILQD 617 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 P+ R E+A A GA AL G KY D VRV+ + S LCGGTHVS+T + Sbjct: 618 HPLQEFRESTMEEAKAKGAMALFGEKYGDSVRVIQLGD------SVELCGGTHVSTTAAL 671 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSESS+ AGIRRIEA+ G A +L + +++ K + + +E + + Sbjct: 672 SPFVIVSESSVAAGIRRIEALAGHSAAIYLKQAQQSQQAILEVTKGQ--DPLEAMESMKK 729 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E +Q + + S I N M+ + ++D+ K + AL K+ Sbjct: 730 ELSAMQKALKSYQSAQAGDLKTELLQSAKAIGPYNMMAAAV-DLDAASAKDLAFALVKQD 788 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +++L +S + KA + V + LD +A + + G GGG+ A +GG Sbjct: 789 PKSVVLLA-LSNDGKAQAHMAVGKQALDVAHAGQWVKALGHYI-QGSGGGQDFYASAGGK 846 Query: 881 NGNKADQAIAGVASFL 896 + + + L Sbjct: 847 SPSGIPDLLQAFEEKL 862 >gi|15903283|ref|NP_358833.1| alanyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116515613|ref|YP_816683.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39] gi|32171540|sp|Q8DPC7|SYA_STRR6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122278431|sp|Q04JW5|SYA_STRP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15458878|gb|AAL00044.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116076189|gb|ABJ53909.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39] Length = 872 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T+ +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVDNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQPKIQELLDAVAGKL 872 >gi|221632736|ref|YP_002521957.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] gi|221155742|gb|ACM04869.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] Length = 878 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 323/909 (35%), Positives = 494/909 (54%), Gaps = 52/909 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR F+EFF + GH +PSSSLIP DPT++ T +GM F G E+P + + Sbjct: 1 MQSSEIRRAFIEFFAERGHVQVPSSSLIPS-DPTVLLTTAGMQQMVPYFLGLERPPHTRL 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T++QKC R D+D VG H TFFEMLGNFS G YFK AI AW+ LTK + Sbjct: 60 TSIQKCFRTV----DIDEVG-DESHLTFFEMLGNFSIGDYFKAEAISWAWEFLTKWLGVP 114 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 R Y TV+ +DE +++ W+ G+ ++I ++ DN+W + TGP GP SEI +D+G Sbjct: 115 AERWYPTVHPDDEFSYQYWRDQIGVPTERIFKL--EDNWWGPVGATGPNGPDSEIHYDRG 172 Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G G + R++E WNLVFM+F ++ + LP+ +IDTGMGLER++ ++Q Sbjct: 173 MEYGCGRTECGPGCDCGRFLETWNLVFMEFYKEADGTQRPLPRKNIDTGMGLERISLIMQ 232 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 + ++ DLF ++ + + G++Y+ + RVI DH R +FL+ DG+ P+NEG Sbjct: 233 GVGSVFETDLFYPILSEAATIAGVRYKEQARVDRSLRVIADHARGVTFLVGDGVFPSNEG 292 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ + +LLG P + L+ + S YP L + + I +R E+E Sbjct: 293 RGYVLRRVLRRAVRHGKLLGIERPFLNQLVDVVIELFSSYYPNLNEQRERIHRVIRHEEE 352 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F +TL GL + +L L + +++L GD AF+LYDT+G PL++ +++ G +D Sbjct: 353 HFQRTLSAGLSRFEALLDQLQRSGEQVLPGDEAFRLYDTYGFPLELTEELARESGFT-VD 411 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +ALE QR +RA ++ + T+F+GYD L Sbjct: 412 RAGFERALERQRELSRASVGRFADTQRQRAELYAQFSERPTEFVGYDRLE---------- 461 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + I+ ++ +EA +G+++E++ D+TPFY EAGGQ+GDTG Sbjct: 462 -------------TTATIVGILGLSDLRQEAEAGEEIELILDRTPFYGEAGGQVGDTGEI 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + + + D Q+ + VH V G +R S+ +D + R + NH+ATHLLH Sbjct: 509 VAETGIVTVEDTQRPTPELIVHRGRVREGSIRVGQSVRAIVDAERRAAIRRNHTATHLLH 568 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG H Q GS + PD LRFD +H + ++ +L+ IE+ VN+ I ++L V R + Sbjct: 569 AALRRVLGEHAVQAGSLVAPDRLRFDFSHHESVSPEQLRRIEEMVNEQIVRDLRVEVRYL 628 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 DA+A GA AL G KY D VRVVS++ S LCGGTHVS TGEI I E+ Sbjct: 629 PLRDALAEGAIALFGEKYGDTVRVVSIDG-----FSKELCGGTHVSHTGEIGAFLITDET 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +GIRRIEA+TG A + + A L V + +E + ++ R Q Sbjct: 684 SVASGIRRIEAVTGLAAARLARTLIDVSEEAARRLHVVPEQLPEAIERLQQQVRDQQREI 743 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + L L+ +I +S I L+ V D L+ I SG+++L G Sbjct: 744 ERLAADLAAARLAPLVERAARIDGFRVVSARIEVPSLDVLRRVGDRLRDAIGSGVVIL-G 802 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + E + +L + T D + R +A + + +LGG G GGRP +AQ GG + ++ D+A Sbjct: 803 TAIENRPMILAMATPDAVQRGVHAGQVVQAVTPLLGGRG-GGRPDIAQGGGADVSRLDEA 861 Query: 889 IAGVASFLK 897 +A ++ Sbjct: 862 LAAARGEVE 870 >gi|87123480|ref|ZP_01079331.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917] gi|86169200|gb|EAQ70456.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917] Length = 911 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 335/896 (37%), Positives = 493/896 (55%), Gaps = 56/896 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F+++ GH+ + S+SL+P DPT++ T +GM+PFK +F GQ++ T Sbjct: 35 SGEQIREAFLAFYEQRGHQRIASASLVPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 93 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L Sbjct: 94 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSP 149 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+E +W+ G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 150 KNLVVSVFREDDEGEAIWRDRVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 209 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ N Sbjct: 210 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGTLTPLENRNIDTGMGLERMAQILQAVPN 268 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI+ + Q+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 269 NYETDLIYPLIETAAQLAGVAYPALDGKGKTSLKVIGDHSRAITQLIGDGVTASNLGRGY 328 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P + + A M SAYP+L++ + +I L+ E+ RF Sbjct: 329 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERREVILAELQREEARFL 388 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ K ++G AF+LYDT+G PL++ ++I GL +D+ F Sbjct: 389 ETLERGEKLLADVLAAKPKQ--ISGAQAFELYDTYGFPLELTEEIAEEHGLT-VDLDGFE 445 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR RA+A ++ + E I + AT F GY+LL Sbjct: 446 AAMEAQRQRAKAAAVSIDLTLQEAID-QVAADLEATAFRGYELLEQ-------------- 490 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537 SS V A+V GE + AV+G V+VV D TPFY E GGQ+GD G GD Sbjct: 491 ---------SSCVVALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDGP 541 Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + + +FVH +ERG+L + +D RR+ NH+ATHLL Sbjct: 542 DGHGLIVAIEAVSRNRSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQA 601 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ + Q GS + D LRFD + +T+AEL+ IE +N I++ + + M Sbjct: 602 ALKQVVDPGIGQAGSLVDFDRLRFDFHCPRAVTAAELEQIEALINGWISEAHSLEVQEMA 661 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A+GA A+ G KY D V D S LCGGTHV++T EI L IVSES Sbjct: 662 IETAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSESG 716 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA+ G ++L +D +K L K +V RV ++ +E + Q Sbjct: 717 VAAGIRRIEAVAGPAVLAYLNERDAVVKQLGERFKAQPAEIVDRVVQLADELKASQKALV 776 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L + + + + V+ L+S L ++ G +++G Sbjct: 777 AAREELALAKSAALAGQAVAVGAHQLLVARLDGVEGGGLQSAAQGLVDQLGDGAAVVLGG 836 Query: 831 SKE----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K ++ + ++ R A AKV GGGG GGRP++AQ+GG + Sbjct: 837 LPDPGDLGKVILVAAFGKAVISRGQQAGKFIGGIAKVCGGGG-GGRPNLAQAGGRD 891 >gi|325853118|ref|ZP_08171267.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A] gi|325484492|gb|EGC87413.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A] Length = 888 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 322/937 (34%), Positives = 492/937 (52%), Gaps = 90/937 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D G +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388 EMG+AYPEL + LI ++ E++ F +TLD+G+ LL+G + L E L+G AF Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + I G +D FN+ + +Q++RAR ++ W L Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAQQKARARNAAV-----VENGDWEVL 472 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 +E G +F+GYD + RKV +K Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + + + D +++ V++ + Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDTKRENNQSIHI---VKQLPKNVK 559 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L + Sbjct: 676 --SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802 + ++ + EE ++ K + Q + V+ + ++ Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVEMVDGVHVIKAVLP 792 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860 VD K ++ +++ + ++ ++G + + + I++++D++ NA + R +A Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYDNRPQLSIMLSDDMVKEHGLNAGKIIREAA 851 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 K++ GG GGG+PH AQ+GG + + A+ V + Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELIN 887 >gi|307705063|ref|ZP_07641945.1| alanyl-tRNA synthetase [Streptococcus mitis SK597] gi|307621386|gb|EFO00441.1| alanyl-tRNA synthetase [Streptococcus mitis SK597] Length = 872 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDADALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV + K +VL+ + +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGD-KVNVLVASK---IKDLHAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|311113673|ref|YP_003984895.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931] gi|310945167|gb|ADP41461.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931] Length = 893 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 317/927 (34%), Positives = 493/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I ++EFF+K GH ++PS+SLI N+P MFT +GMVPF F G+E P + Sbjct: 1 MLSQEISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT Sbjct: 60 TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T+Y+ D EAF +W K G ++I R+ +N+WS + GP GP SEIF Sbjct: 116 GYGLDPERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G G G + + +RYIEIWNLVFMQ+++ + LPK +IDTG+G+ Sbjct: 176 YDRGPAY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + ++ A+ +++G KY + V RV+ DH+RS Sbjct: 235 ERLAMLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESPEDPGYEDDVRMRVVADHIRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 S LIADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVA 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399 I +E++ F T++ G L+ + + ++G AF L+DT+G P+D Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVATAKKDGSNSVSGAEAFALHDTYGFPID 414 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D +F + + EQR RA+A + + + F G Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGSFADLSELRKLVDERGSIFTG 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y LR + ++A+++ G V A +G K+EVV D+TP Sbjct: 474 YTELR-----------------------TETHLRALLKDGVSVPVAKAGDKIEVVLDETP 510 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQ DTG G+G + + DVQ+ +G+ VH A+V G +V +D Q Sbjct: 511 FYAEGGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQR 570 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR HS TH++H AL +LG+ +Q GS LRFD + ++ + + +E+ Sbjct: 571 RRDGEKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVA 630 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I N V+ R M +A A GA +L G KY + VR+V + GG S LCGGTHV Sbjct: 631 NLAIRDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHV 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758 ++ EI L +++E S+ +G RR+EA+ G + HL + + L +KV + Sbjct: 687 GTSSEIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPE 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813 ++ + + + + K + + + + I V ++H E+D+ ++S+ Sbjct: 747 KINQTLAKLKSAEKELEKLRREKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLA 806 Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 L+ + S ++ V + +L+ E + A L RL+A +LGGGG GG+ Sbjct: 807 LDLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAAGILGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG + +K +A+ + + + + Sbjct: 866 DDVAQGGGQDASKVSEALDAIRNAIAQ 892 >gi|291557844|emb|CBL34961.1| alanyl-tRNA synthetase [Eubacterium siraeum V10Sc8a] Length = 878 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 331/912 (36%), Positives = 497/912 (54%), Gaps = 53/912 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ +R ++L+FF+ GH + S+ L+P D +++ N+GM P K F G E+P Sbjct: 1 MKWTGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPR 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 VTT QKC+R D+DNVG+T RH T+FEMLGNFSFG YFK A AW+ LTK Sbjct: 61 HRVTTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ + RL++T+Y+ED EA +W G+ D+II++ DNFW +GPCGPCSEI FD Sbjct: 117 EIPEDRLWVTIYEEDNEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFD 175 Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 +GE P + E +R IEIWNLVF QF+ K L +IDTGMGLER+A V+ Sbjct: 176 RGEKYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVM 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N +++D +++++ V G+ Y V+ RVI DH+RS++F++ DGI P+NE Sbjct: 236 QDVDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + R+LG P + + + E +AYPEL + + I++ +++E+ Sbjct: 296 GRGYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E F KT+D+G+ +L + L + IL+G+ FKL+DT+G P+D+ ++IL + Sbjct: 356 ESFAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKN-I 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 GID F + + EQ+++AR++ G G E +L T F+GY L Sbjct: 415 GIDEERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + A+++ GE+ + G +V VV D TPFYAE+GGQ+GD Sbjct: 464 ---------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDVTPFYAESGGQVGDC 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +Q+ D +K G F+ + VE G T+ S+ +D + R + NH+ H Sbjct: 509 GTITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG HV Q GS + P RFD +H +T EL+ IE VND I +PVVT Sbjct: 569 LLQAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILSGIPVVT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A GA AL G KY D VRVV G S+ CGGTH+ +T + L I+ Sbjct: 629 EELPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKL 770 SE+S+ +G+RRIEA+TG S + ++A LK + V+ + E + E + Sbjct: 684 SETSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHAM 743 Query: 771 QLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + Q+ ++ + S ++S V L+ D L+ S I Sbjct: 744 QAEIDRLNGIISMSQMKNVTDGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+S K + I E + NA + + A + GG G GG+P A +G + K Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKKIAAIAGGKG-GGKPDTAMAGIADVTKI 862 Query: 886 DQAIAGVASFLK 897 D+A+ + +K Sbjct: 863 DEALLALTDIVK 874 >gi|300741580|ref|ZP_07071601.1| alanine--tRNA ligase [Rothia dentocariosa M567] gi|300380765|gb|EFJ77327.1| alanine--tRNA ligase [Rothia dentocariosa M567] Length = 893 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 318/927 (34%), Positives = 493/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I ++EFF+K GH ++PS+SLI N+P MFT +GMVPF F G+E P + Sbjct: 1 MLSQEISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT Sbjct: 60 TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T+Y+ D EAF +W K G ++I R+ +N+WS + GP GP SEIF Sbjct: 116 GYGLDPERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 +D+G G G + + +RYIEIWNLVFMQ+++ + LPK +IDTG+G+ Sbjct: 176 YDRGPAY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + ++ A+ +++G KY + V RV+ DH+RS Sbjct: 235 ERLAMLLQGVENFYESDQVRPVLDAASKLSGKKYHGSESPEDLGYEDDVRMRVVADHIRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 S LIADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVA 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399 I +E++ F T++ G L+ + + ++G AF L+DT+G P+D Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVATAKENGSNSVSGAEAFALHDTYGFPID 414 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D +F + + EQR RA+A + + + F G Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTG 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y LR + ++A+++ G V A +G K+EVV D+TP Sbjct: 474 YTELR-----------------------TETHLRALLKDGVSVPVAKAGDKIEVVLDETP 510 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQ DTG G+G + + DVQ+ +G+ VH A+V G +V +D Q Sbjct: 511 FYAEGGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQR 570 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR HS TH++H AL +LG+ +Q GS LRFD + ++ + + +E+ Sbjct: 571 RRDGEKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVA 630 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I N V+ R M +A A GA +L G KY + VR+V + GG S LCGGTHV Sbjct: 631 NLAIRDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHV 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758 ++ EI L +++E S+ +G RR+EA+ G + HL + + L +KV + Sbjct: 687 GTSSEIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPE 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813 ++ + + + + K + + + + I V ++H E+D+ ++S+ Sbjct: 747 KINQTLAKLKSAEKELEKLRREKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLA 806 Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 L+ + S ++ V + +L+ E + A L RL+A VLGGGG GG+ Sbjct: 807 LDLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAASVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG + +K +A+ + + + + Sbjct: 866 DDVAQGGGQDASKVSEALDAIRNAIAQ 892 >gi|225857018|ref|YP_002738529.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031] gi|225726317|gb|ACO22169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031] Length = 872 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLVIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDVVAGKL 872 >gi|148997564|ref|ZP_01825169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] gi|168575843|ref|ZP_02721758.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|194397245|ref|YP_002038030.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54] gi|307068035|ref|YP_003877001.1| alanyl-tRNa synthetase [Streptococcus pneumoniae AP200] gi|147756619|gb|EDK63660.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] gi|183578173|gb|EDT98701.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|194356912|gb|ACF55360.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54] gi|306409572|gb|ADM84999.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae AP200] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQLSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GRNQAKIQELLDAVAGKL 872 >gi|307709086|ref|ZP_07645545.1| alanyl-tRNA synthetase [Streptococcus mitis SK564] gi|307620032|gb|EFN99149.1| alanyl-tRNA synthetase [Streptococcus mitis SK564] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 + +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEADMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-IASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAAGNLVATVTNVQKAPNGQALHTVEVHAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|306824980|ref|ZP_07458323.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432807|gb|EFM35780.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 325/918 (35%), Positives = 487/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G + +++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAAGNLVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK +A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKVVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R LQ +A+ K + + +++ +S D+ L++ D ++ Sbjct: 740 QEQVRHLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|325285608|ref|YP_004261398.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489] gi|324321062|gb|ADY28527.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489] Length = 871 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 335/920 (36%), Positives = 489/920 (53%), Gaps = 73/920 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+ FLEFF+ H+++ S+ ++ +DPTLMFTN+GM FK F G + V Sbjct: 1 MKSQEIRSQFLEFFKNKTHKIVSSAPMVIKDDPTLMFTNAGMNQFKEFFLGNTEAKNTRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+LLTK F +D Sbjct: 61 VDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEDAISWAWELLTKVFKID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D+EA LWKKI + +I+ DNFW M + GPCGPC Sbjct: 121 ESSLYVTVFEGSKDKDNLEMDQEALDLWKKI--IPESQILFGNKKDNFWEMGDQGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + G + + + +EIWNLVFMQ+ ++ E LP +DTGM Sbjct: 179 SEIHVDIRSAEEKAKVSGAELVNMDHPQVVEIWNLVFMQYNRKANGELENLPAKHVDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286 G ER+ V+Q +NYD D+F +I+ E +T +Y N N RVI DH+R+ +F I Sbjct: 239 GFERLCMVMQGVQSNYDTDVFTPIIREIETITNAEYNKNEDTNIAIRVIADHIRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP M L+ L MG A+PEL + K Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTNTMGDAFPELKEQKQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE ++ E+ F KTLD+GLVLLD V++ + ++G AF+LYDT+G P+D+ IL Sbjct: 359 LIENVVKEEEHSFLKTLDQGLVLLDSVINSAS-SKTIDGRKAFELYDTYGFPIDLTALIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG +D F+ A++EQ++R+R+ S K + + + +F+GYD+L Sbjct: 418 SERGYT-LDEKGFDAAMQEQKNRSRSASE------VSKEDWEVLLQDAEQEFVGYDVLET 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + RK V G++ ++VF+ TPFYAE G Sbjct: 471 NVRLVKYRK---------------------------VTSKKEGKQYQLVFNITPFYAEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + KK +H A + T +D + R++ + Sbjct: 504 GQVGDKGYLEAQNGDVVYILDTKKENNEIIHFA--KNLPKNTTDIFKAVVDVKQRQRTAS 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+HV Q GS + LRFD +H +T+ +LK +ED VN I Sbjct: 562 NHTATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTTEQLKEVEDFVNARIEG 621 Query: 646 NLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 NLP R + ++A+ +GA AL G KY D VR++ S LCGGTHV +TG+ Sbjct: 622 NLPLEEKRNIPMQEALDAGAMALFGEKYGDTVRLIRFG------QSVELCGGTHVQNTGD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SE ++ +GIRRIEAIT + +E L + L + + V V + Sbjct: 676 IWHFKIKSEGAVASGIRRIEAITSDAVKDFYADNNEVLTDIKEVLN-NAKDPVKAVVSLQ 734 Query: 765 EEYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE KL+ + K + DL + V F++ + ++D +K + + Sbjct: 735 EENNKLKKEIEQLLKDKAKNLKGDLLNELQDVNGVQFLAKKV-DLDPAGIKDLCFNMGAN 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + +L G KA++ ++++L NA + R K + GGG GG+P A + Sbjct: 794 ATNM-FLLFGAENNGKATLSCYISKELAAEKDLNAGAIVRELGKYIQGGG-GGQPFFATA 851 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG N +A+ +++K Sbjct: 852 GGKNPGGIAEALDKAIAYIK 871 >gi|148989504|ref|ZP_01820863.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] gi|149007347|ref|ZP_01831005.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|147761151|gb|EDK68119.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|147925047|gb|EDK76128.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] gi|332074706|gb|EGI85180.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17545] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|15901237|ref|NP_345841.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] gi|111658578|ref|ZP_01409235.1| hypothetical protein SpneT_02000253 [Streptococcus pneumoniae TIGR4] gi|20532258|sp|Q97Q48|SYA_STRPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|14972870|gb|AAK75481.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVDNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQPKIQELLDAVAGKL 872 >gi|307706847|ref|ZP_07643649.1| alanyl-tRNA synthetase [Streptococcus mitis SK321] gi|307617720|gb|EFN96885.1| alanyl-tRNA synthetase [Streptococcus mitis SK321] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 329/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDEVAGKL 872 >gi|168484561|ref|ZP_02709513.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] gi|172042221|gb|EDT50267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGEL 872 >gi|15673706|ref|NP_267880.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|20532263|sp|Q9CEW0|SYA_LACLA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|12724742|gb|AAK05822.1|AE006402_10 alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|326407190|gb|ADZ64261.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56] Length = 872 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 321/915 (35%), Positives = 474/915 (51%), Gaps = 67/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI AW+LLT + F+ Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFE 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LYIT Y D++ + W + G+ ++ I DNFW + GP GP +EIFFD+ Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF E LP+ +IDTGMGLE Sbjct: 176 GEVYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290 RM ++Q N+D DLF +I+ E+++G Y + ++ +VI DH+RS SF I DG Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +T+D G L+D +L +L + L G F+LYDT+G P+++ +++ Sbjct: 356 IDREEETFNRTIDAGQKLIDELLLNLKSEGKDRLEGADIFRLYDTYGFPVELTEELAEDE 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G ID F A++ Q+ RARA + GS + +L ++F+ Y+ Sbjct: 416 GFK-IDHEGFKVAMKAQQERARAAVVKGGSMGAQN--ETLSSIEVESEFL-YED------ 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + +Q EIV+E K ++VFD TPFYAE GGQ+ Sbjct: 466 -----------------KTTQGKLLVSIQDDEIVDEVSG--KAQLVFDVTPFYAEMGGQV 506 Query: 529 GDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G ++ + A H++ L+ S L ID + R + NH Sbjct: 507 ADHGVIKDAEGQVVANVLDVQHAPHGQNLHSVETLSPLKVGESYTLEIDKERRAAVVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH +T EL IE VN++I Q+L Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + A GA AL G KY VRVV + G +S LCGGTH +T EI L Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G+RRI A+TGQ+A + L +A+ +K Q V+ +V + +E Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATMVKAPQTSQVLAKVTSLQDE 741 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q + +L + +NF++ ++ D+ L+++ D ++K Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV EK + ++ + D A +L + A + G GGG+P MA +GG Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 857 AAGIPELLAAVAEKL 871 >gi|318040735|ref|ZP_07972691.1| alanyl-tRNA synthetase [Synechococcus sp. CB0101] Length = 889 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 336/907 (37%), Positives = 498/907 (54%), Gaps = 53/907 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+F+++ GH+ + S+SL+P DPT++ T +GM+PFK +F GQ++ T Sbjct: 18 TGAEIRAAFLDFYEQRGHKPMASASLVPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 76 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T F L Sbjct: 77 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLSP 132 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 133 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 192 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ N Sbjct: 193 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQAVPN 251 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI+ + Q+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 252 NYETDLIYPLIETAAQLAGVAYPALDDKGKTSLKVIGDHSRAITQLICDGVTASNLGRGY 311 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P + + A M SAYP+L++ + +I L+ E+ RF Sbjct: 312 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLVERREVILAELQREEARFL 371 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ K ++G+ AF+LYDT+G PL++ ++I GL +D+ F Sbjct: 372 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTEEIAEEHGLT-MDLEGFE 428 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR RA+A ++ + E I + AT F GY+LL Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAID-QVAADLEATAFRGYELLEQ-------------- 473 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 SS V A+V GE + AV+G V+VV D TPFY E GGQ+GD G GD Sbjct: 474 ---------SSCVLALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDE- 523 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D + +FVH +ERG+L + +D RR+ NH+ATHLL AL Sbjct: 524 LIVAIDAVSRNRSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAALKQ 583 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD + ++++EL+ IE +N I++ + + M E A Sbjct: 584 VVDPGIGQAGSLVDFDRLRFDFHCPRAVSASELEQIEVLINGWISEAHSLEVQEMAIEKA 643 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D V D S LCGGTHV++T EI L IVSES + AG Sbjct: 644 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSESGVAAG 698 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IH 774 IRRIEA+ G ++L +D +K L K +V RV ++ +E + Q Sbjct: 699 IRRIEAVAGPAVLAYLNERDGVVKQLGERFKAQPAEIVDRVVQLADELKASQKALAAARE 758 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 + + + + + V+ L+S L ++ G +++G + Sbjct: 759 ELALAKSAALAGLAVAVGEHQLLVARLDGVEGGGLQSAAQGLADQLGDGAAVVLGGLPDP 818 Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++ + ++ A AK GGGG GGRP++AQ+GG +G D A+ Sbjct: 819 ADLGKVILVASFGKAVIAAGPKAGAFIGGIAKACGGGG-GGRPNLAQAGGRDGAALDGAL 877 Query: 890 AGVASFL 896 + L Sbjct: 878 EQARTEL 884 >gi|259649109|dbj|BAI41271.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG] Length = 912 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 315/916 (34%), Positives = 481/916 (52%), Gaps = 59/916 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 35 MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 94 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K FD Sbjct: 95 TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 150 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +RLY+TVY +D+ +LW+K G++ D I+ DNFW + E GP GP SEIF+D+ Sbjct: 151 FDPKRLYVTVYPKDKVTKELWRK-VGVADDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 206 Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ E RY+EIWN+VF + P +IDTGMGLER+ Sbjct: 207 GQSFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 266 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q ++ DLF +I+A+E+++ K + V+ ++I DH R+ +F I DG L Sbjct: 267 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFAIGDGAL 326 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + Sbjct: 327 PSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVI 386 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE+ RF +TLD G+ LL+ +++ L +D ++G AFKL+DT+G P+++ + G Sbjct: 387 ESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGADAFKLFDTYGFPVEMTNEYAEDEG 446 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + + QR RAR S ++ L + ++F G+ L Sbjct: 447 LK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH-- 501 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++AIV ++ +E +GQ +++FD+TPFYAE GGQ+ Sbjct: 502 --------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQVA 540 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + A H + + L L++D R+++S+NH+ Sbjct: 541 DHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQPYWLSVDRLRRQKVSLNHT 600 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I LP Sbjct: 601 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALP 660 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M +A GA A+ G KY D VR+VS+ G ++ GGTH ++T + L Sbjct: 661 ITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNALGLF 715 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I SES I AG+RR+EA+T + A +L Q + LK A LK+ Q NV +V ++ + Sbjct: 716 KITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQADL 775 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q A + +L + + + ++ + EL+ + D + K S Sbjct: 776 KTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLADEWKTKQAS 835 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + K ++ A DL + A +GGGG GGRP MAQ+GG Sbjct: 836 DILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKKP 894 Query: 883 NKADQAIAGVASFLKK 898 A+A + + + Sbjct: 895 AGIPSALAEAKNVISQ 910 >gi|169833050|ref|YP_001694818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] gi|205830228|sp|B1ICI3|SYA_STRPI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|168995552|gb|ACA36164.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] Length = 872 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G + + FYAE G Sbjct: 462 ----------------NHNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQPKIQELLDAVAGKL 872 >gi|168493286|ref|ZP_02717429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|221232124|ref|YP_002511277.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] gi|183576772|gb|EDT97300.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|220674585|emb|CAR69148.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] Length = 872 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAAILKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|327314000|ref|YP_004329437.1| alanine--tRNA ligase [Prevotella denticola F0289] gi|326944684|gb|AEA20569.1| alanine--tRNA ligase [Prevotella denticola F0289] Length = 888 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 324/937 (34%), Positives = 492/937 (52%), Gaps = 90/937 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D G +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388 EMG+AYPEL + LI ++ E++ F +TLD+G+ LL+G + L E L+G AF Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + I G +D FN+ + +Q++RAR ++ W L Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAQQKARARNAAV-----VENGDWEVL 472 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 +E G +F+GYD + RKV +K Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + + + D +++ V++ E Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDTKRENNQSIHI---VKQLPKNVE 559 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L + Sbjct: 676 --SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802 + ++ + EE ++ K + Q + V+ + ++ Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRTQAVDRAAKTLAERVEMVDGVHVIKAVLP 792 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860 VD K ++ +++ + ++ ++G E + + I++++D++ NA + R +A Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKIIREAA 851 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 K++ GG GGG+PH AQ+GG + + A+ V + Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELIN 887 >gi|326803428|ref|YP_004321246.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651546|gb|AEA01729.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 883 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 315/923 (34%), Positives = 487/923 (52%), Gaps = 65/923 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M IR +++F++ GH++ PS+SL+P NDPTL++ NSG+ K+ G E P Sbjct: 1 MKKLTGEEIRQMWIDFWKGKGHDIYPSASLVPDNDPTLLWMNSGVAALKHYLDGSEVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QKC+R ND++NVG T RH TFFEMLGN+S G YFKE I AW+ LT K Sbjct: 61 PRIANAQKCIRT----NDIENVGVTARHQTFFEMLGNWSVGDYFKEEVIPWAWEFLTDEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD LY+T Y +D+ + LW+K++GLS D + + DNFW + GPCGP +EIF Sbjct: 117 WLGLDPELLYMTYYPDDDVSHGLWQKVTGLSEDHFVSL--EDNFWDLG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 FD+G+ E ERY+EIWN+VF +F L + ++DTGMGLE Sbjct: 174 FDRGKAYQDLDDDDPEMFPGGENERYLEIWNIVFSEFNHMPDGSYEKLKQHNVDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288 R+++VLQE N++ DL LI+ E+++ K +VI DH+R+ SF + D Sbjct: 234 RISSVLQETPTNFETDLLFPLIKEVEKLSDGKKYGESKETDTAMKVIADHIRAVSFAVGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+NEGRGY+LRR++RR++ Y R LG + L+P + +M YPEL + + +I+ Sbjct: 294 NALPSNEGRGYILRRLIRRSVMYGRRLGIQGSFLAKLVPIVADKMEKHYPELKEKEAIIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E + E++RF +T+ G ++ ++ L + + L+G AFKLYDT+G PL++ ++ L Sbjct: 354 EVVDREEKRFQETIADGENIIKNKIAELEESGENSLDGQSAFKLYDTYGFPLELTEEYLA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G + +DI FNQA+EEQ+ RARA G + L E + F GY+ Sbjct: 414 ETGFS-VDIDGFNQAMEEQKERARAARKDQGGLAVQSTV--LGEIDVPSHFTGYEE---- 466 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + + AIV Q EI +EA + K + ++TPFY E GG Sbjct: 467 -------------------DVTETKINAIVYQDEISQEAPANSKAYFIAEKTPFYGERGG 507 Query: 527 QLGDTGCAIGDGIRLQIT--DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q+GD+G L D + +H+ + + + L +D RR + Sbjct: 508 QVGDSGKLYNLDGELLGYIRDTKHAPNDQNLHYIDTVQ-PISVGQEVRLEVDSARRRLIR 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH L +LG V+Q GS + LRFD T+ ++S +L+ +E VN+ I Sbjct: 567 NNHTATHLLHRVLKDVLGEQVNQAGSLLDEHYLRFDFTYFGQVSSDQLEEVERRVNEKIW 626 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + +PV T + A GA AL G KY +D +RV+++ S LCGGTHV + Sbjct: 627 EQIPVETIFTTVKAAKEHGAIALFGEKYLKLHDEIRVINI-----DDWSMELCGGTHVKN 681 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 TG I L I+SES I +G+RRIEA+T + A + + L + LKV + +V R+ Sbjct: 682 TGFIGLFKIISESGIGSGVRRIEALTSKAAYEYYEAKLGLLNQVRDDLKVKKAEDVPHRL 741 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDA 815 +++ E + L+ + N S + V +++ + +L+++ D Sbjct: 742 QQLEGERKSLESEVESLHAKANQMAASQIFDAVKESNGVRYIAEELDHKTMDDLRAISDE 801 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ S +++L + +K ++ V + + + A D+ + A + GG GGGRP +A Sbjct: 802 WKQNNYSDVLVLATANGDKANMLVAVSPDKVKEGLKAGDIIKELAPYINGG-GGGRPELA 860 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q+GG N A+ + L K Sbjct: 861 QAGGKNPAGIPDALKALEEVLNK 883 >gi|317505218|ref|ZP_07963150.1| alanine--tRNA ligase [Prevotella salivae DSM 15606] gi|315663647|gb|EFV03382.1| alanine--tRNA ligase [Prevotella salivae DSM 15606] Length = 916 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 314/936 (33%), Positives = 481/936 (51%), Gaps = 89/936 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59 M + +R +F +FF+ H+++ S+ ++ +DPTLMFTN+GM +K+I G + P Sbjct: 30 MMTANEVRESFKKFFESKEHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 89 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L Sbjct: 90 RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDFAWEYLVDVLH 149 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L+ LY+TV++ D+EA W K + AD II +DNFW M +TGPCGP Sbjct: 150 LNPEDLYVTVFEGAPEEGLKRDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 207 Query: 172 CSEIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 C+EI D + G +++ + IEIWN+VFMQF ++ LP IDTG Sbjct: 208 CTEIHVDSRTPEEKAKLPGRELVNKDNPQVIEIWNIVFMQFNRKADGSLEPLPMHVIDTG 267 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272 MG ER+ +LQ+K +NYD D+F+ +I+ E ++G KY + Sbjct: 268 MGFERLVRMLQDKHSNYDTDIFQPVIKQIELLSGKKYGFTTPTGENGEGKDEQEKIDIAM 327 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E + L+P L Sbjct: 328 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLVPVLVQ 387 Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFK 389 EMG AYPEL + LI ++ E++ F +TL++G+ LL+G + L L+G AF+ Sbjct: 388 EMGEAYPELSAQQELISRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTELDGTSAFR 447 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 L+DT+G PLD+ + I G +D F++ + +Q++RAR + W ++ Sbjct: 448 LFDTYGFPLDLTELICREHGYT-VDEKGFDEEMAKQKARARNA-----AAVENGDWEVVR 501 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 + G F+GYD + + RKV +K Sbjct: 502 D--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF--------------------------- 532 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 E+V D TPFY E GGQ+GD G + + I D +++ V+ E Sbjct: 533 -YEIVLDYTPFYGEMGGQVGDQGTLVSANETINIVDTKRENNQSIHI---VKELPKDIEA 588 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + +D + R + NH+ATHLL +AL ILG HV Q GS + P LRFD +H + ++ Sbjct: 589 EFMACVDVEKRNGSAANHTATHLLDYALKQILGDHVEQKGSYVDPTTLRFDFSHFQKVSD 648 Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 +L+ +E VN +I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 649 EQLRQVERLVNKMIREDYPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP----- 703 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S CGG H STG+I I+SESS+ AGIRRIEA+TG + + + L S Sbjct: 704 -SCEFCGGIHAKSTGQIGFFKIISESSVAAGIRRIEALTGVACEDTIYALQDTMNDLKSM 762 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLS--CHKIADVNFMSHIISE 803 + ++ + + E+ +++ K + Q ++L + V + ++ Sbjct: 763 FN-NAKDLKATLLKFIGEHDEMRKEIEKFQAQAVERVKDELLKRAQNVNGVQVIKAVLP- 820 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861 ++ K + L++ + ++ ++G + K + ++ ++D++ + NA + R +AK Sbjct: 821 LEPAAAKDLAFKLRETLNEKLVAVIGSTAGDKPLLTVMFSDDMVKDYALNAGKIIREAAK 880 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ GG GGG+PH AQ+GG N A+ V + Sbjct: 881 LIQGG-GGGQPHYAQAGGKNIEGISAAVDKVIELVN 915 >gi|33866890|ref|NP_898449.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8102] gi|41018174|sp|Q7U3R9|SYA_SYNPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33639491|emb|CAE08875.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 8102] Length = 889 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 320/892 (35%), Positives = 485/892 (54%), Gaps = 53/892 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL F+ + GH+ + S+SLIP DPT++ T +GM+PFK +F GQ++ T Sbjct: 16 SGEDIREAFLNFYAERGHQRMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ + +D Sbjct: 75 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTQVYGIDP 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 131 RNLVVSVFREDDEAEQIWRDVVGVNTKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ N Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQYNRDAEGNLTPLANRNIDTGMGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ + + Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADLACVDYAQLDDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + A+P +I+ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLVTMGEAAIDLLKGAHPGVIERQEVILAELQREEARFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ + ++G AF+LYDT+G PL++ Q+I + +D+ F Sbjct: 370 ETLERGEKLLAEVLAS--RPTQISGAQAFELYDTYGFPLELTQEIAEEQ-RITVDLDGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQR RA+A ++ + + I + AT F GYD L Sbjct: 427 VAMEEQRQRAKAAAVSIDLTLQDAI-EQVAGDQPATAFKGYDALDHP------------- 472 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+V G A +G V+VV D TPFY E GGQ+GD G G + Sbjct: 473 ----------STVQALVVNGAPASTASAGDVVQVVLDSTPFYGEGGGQVGDRGSLSGVDV 522 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D ++ +FVH +ERG L ++ +D RR+ NH+ATHLL AL Sbjct: 523 -IVAIDSVSRSRDVFVHSGRMERGHLAVGDTVNAQVDRSCRRRAQANHTATHLLQAALKQ 581 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD +T+ +L IE +N IA+ + + M + A Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHCPTAVTAEQLAQIETLINGWIAEAHCLEVQEMAIDQA 641 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D V D S LCGGTHV++T EI L IV+ES + AG Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESGVAAG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IH 774 IRRIEA+ G ++L +D +K L K +V RV + EE + Sbjct: 697 IRRIEAVAGPAVLAYLNERDAVVKQLGDRFKAQPAEIVDRVTALQEELKATGKALAAAQA 756 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 + + + + + V+ L+ +L ++ G +++G + Sbjct: 757 ELAVAKAGALAAKAEAVGEFQLLVERLDGVEGAGLQGAAQSLADQLGDGAAVVIGGLPDP 816 Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 K ++ + ++ + A AK GGGG GGRP++AQ+GG + Sbjct: 817 GDLGKVILVAAFGKQVIAAKLQAGKFIGGIAKQCGGGG-GGRPNLAQAGGRD 867 >gi|281420549|ref|ZP_06251548.1| alanine--tRNA ligase [Prevotella copri DSM 18205] gi|281405322|gb|EFB36002.1| alanine--tRNA ligase [Prevotella copri DSM 18205] Length = 887 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 321/936 (34%), Positives = 489/936 (52%), Gaps = 89/936 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59 M + +R +F +FF+ GH+++PS+ ++ +DPTLMFTN+GM +K+I G + P Sbjct: 1 MMTANEVRESFKKFFEGKGHKIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI +AW+ LT+ Sbjct: 61 RRVDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLTEILK 120 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L+ LY+TV++ D EA W K + AD II +DNFW M +TGPCGP Sbjct: 121 LNPADLYVTVFEGSKEEGLERDNEAAGYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178 Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSEI D + + G +++ + IEIWN+VFMQ+ ++ LP IDTG Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272 MG ER+ +LQ+K +NYD D+F+ +I+ E ++G KY + Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKEIEAISGKKYGFTTPTGENGEGKDEQEKIDIAM 298 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331 RV DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG + M L+ L Sbjct: 299 RVCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVNVLVE 358 Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFK 389 +MG+A+PEL + LI ++ E++ F +TL++G+ LL+G + L L+G AF+ Sbjct: 359 QMGAAFPELPAQQELITRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTQLDGVSAFR 418 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 L+DT+G PLD+ + I G +D FN+ +++Q+ RAR + W LK Sbjct: 419 LFDTYGFPLDLTELICRENGYT-VDAAGFNEEMKKQKERARNA-----AAVENGDWEVLK 472 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E G F+GYD + RKV +K Sbjct: 473 E--GDQNFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 E+V D TPFY E GGQ+GD G + + +Q+ D +++ V+ Sbjct: 504 -YELVLDNTPFYGEMGGQVGDKGVLVSENETIQVIDTKRENNQSIHI---VKELPKDVNA 559 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + +D +NR + NH+ATHLL + L +LG HV Q GS + D LRFD +H + +T Sbjct: 560 DFMACVDIENREGSAANHTATHLLDYCLKQVLGDHVEQKGSYVDKDTLRFDFSHFQKVTD 619 Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 EL+ +E VN++I + P+ R E+A GA AL G KY D+VRVV Sbjct: 620 EELRKVEHMVNEMIRADYPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFGP----- 674 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S+ CGG H TG+I I+SESS+ AGIRRIEA+TG+ + G + + +L Sbjct: 675 -SAEFCGGIHAKGTGKIGFFKIISESSVAAGIRRIEALTGKACEEAIYGLQDTIVALKGL 733 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISE 803 + ++ G + + +E+ L+ K + Q + +I V ++ ++ Sbjct: 734 FN-NAKDLEGVIRKYIDEHDALKKDVEKFQAQAVERAKDKLVENAKEINGVKVVTAVLP- 791 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAK 861 ++ K ++ +++ + +I +VG K + ++ ++D++ NA + R +AK Sbjct: 792 MEPAAAKDLVFKVREALPENMICVVGSVYNDKPMLSVMFSDDMVKDHGLNAGKMIREAAK 851 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ GG GGG+PH AQ+GG N + A+ V + Sbjct: 852 LIQGG-GGGQPHYAQAGGKNKDGLSAAVDKVVELAQ 886 >gi|15827174|ref|NP_301437.1| alanyl-tRNA synthetase [Mycobacterium leprae TN] gi|221229652|ref|YP_002503068.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923] gi|20532262|sp|Q9CCT0|SYA_MYCLE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13092722|emb|CAC30020.1| alanyl-tRNA synthetase [Mycobacterium leprae] gi|219932759|emb|CAR70605.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923] Length = 908 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 324/942 (34%), Positives = 478/942 (50%), Gaps = 81/942 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D+VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL+ TVY +D+EA LW++I+GL ++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMG 229 +D+G P G P +E+ RY+E+WNLVFMQ E+ + R LP+ +IDTGMG Sbjct: 176 YDRGPEFGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------EGNNIVNHRVIVDHLRSS 282 +ER+A VLQ N Y+IDL + +I Y + V +R+I DH R++ Sbjct: 234 VERIALVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPENEDTNHADNVRYRIIADHSRTA 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 + LI DG+ P N+GRGYVLRR++RR + A+LLG P++ L+ +C MG AYP L+ Sbjct: 294 AILIGDGVSPVNDGRGYVLRRLLRRIIRSAKLLGIDSPIVGDLMATVCNAMGRAYPGLVT 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDI 400 I +E+ F +TL G L D V+ ++ G AF L+DT+G P+++ Sbjct: 354 DFDRINRIAVAEETAFNRTLTSGSKLFDDVVGATVASGSTVVAGLDAFTLHDTYGFPIEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D F++ + +QR RA+ + + + G T+F G+ Sbjct: 414 TLEMAAEAGLT-VDEKGFHELMLQQRQRAKVDAAARKQAHVDLTAYRELVDAGPTEFTGF 472 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQ-----KVE 512 D L + + I +G+ V AV GQ +VE Sbjct: 473 DEL-----------------------TTEARILGIFVEGKRVPVVAHAVRGQAGITNRVE 509 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTE 568 +V D+TP YAE+GGQ+ D G G G R +TDVQK A+ + VH +E G Sbjct: 510 LVLDRTPLYAESGGQIADAGTISGIGAGASSRAAVTDVQKIAKTLHVHRVNLESGEFVEG 569 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 ++V +D RR + HS TH++H AL +LG + Q GS P LRFD +T Sbjct: 570 DTVVAVVDPGWRRGAAQGHSGTHIVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGSLT 629 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 + IE+ N+ + + V T + A A GA AL G Y D VRVV + GG Sbjct: 630 GEQRTQIEEVTNEAVQADFEVHTFTEKLDTAKAMGAIALFGEAYPDEVRVVEM----GGP 685 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S LCGGTHV +T +I + I+ ESSI +G+RR+EA G + HL + + LAS Sbjct: 686 FSLELCGGTHVHNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASS 745 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHIISE 803 L+V V RV + E + + + + I +V + +S Sbjct: 746 LQVPSEEVHARVATLVERLKAAEKELERARQANVQAAATKAAAGAEWIGNVRVVVQRMSG 805 Query: 804 -VDSKELKSVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDLA 856 + +L+ ++ ++ K+ S ++ L+ ++ + + D A DL Sbjct: 806 PIAPDDLRFLVGDIRGKLGSDPAVVALIAVTSDGPTATVPYAVAANPAAQDLGIRANDLV 865 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A ++ G GGG+ +AQ G + D A+ V + + + Sbjct: 866 EQLA-MVVDGRGGGKADLAQGSGKDPTGIDAALDTVRAQIAQ 906 >gi|329943212|ref|ZP_08291986.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10] gi|313848364|emb|CBY17368.1| putative alanyl-tRNA synthetase [Chlamydophila psittaci RD1] gi|325507370|gb|ADZ19008.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC] gi|328814759|gb|EGF84749.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10] gi|328915050|gb|AEB55883.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC] Length = 875 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 328/897 (36%), Positives = 492/897 (54%), Gaps = 48/897 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H ++ SS + P NDP+++FTN+GM FK+IF +E Y Sbjct: 1 MLSNTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+Y TV+++D+EAF LW L +++I R+T DNFWSMAETGPCG CSE+ FD+GE Sbjct: 121 PDRIYATVHEKDDEAFALW--ERHLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P EGER++E WNLVFM+F + + LP +DTG GLER+ +++ Sbjct: 179 QFGKAASPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGT 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ + LI +E+++G KY + RVI DH+RS SF IADG++P N RG Sbjct: 239 DTVFEADVLRLLISKTEELSGKKYHPDEALGAAFRVIADHVRSLSFAIADGLIPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RR++ Y + LG+T+P + ++PAL MG AYPEL + I+E + E+E + Sbjct: 299 YVLRKILRRSVNYGKRLGFTKPFLAEIVPALVDAMGEAYPELRLSASQIQEVMTIEEENY 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 K+L RG LL VL I++G+ AFKL DT+GLPLD + + + +D+ +F Sbjct: 359 FKSLHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIALLAKDYDFS-VDLDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 Q +E + R+R + TT+ ++ SL +T F+GY+ L F Sbjct: 418 YQLEKEAKERSRKNIAK-SHNTTDTVYDSLSLGENST-FVGYNDLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++AI++ GE V +K ++ +TPFYAE GGQ+GD+G Sbjct: 466 -------------IEAIIKDGEQVPYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSD 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ GI +HH V +G L ++ + R+ +S NH+ HLLH AL Sbjct: 513 GTFVVSHTTSPKAGIVIHHGEVSQGQLCPAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH K I +L SIE VN+ I +N V TR + D Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREASYSD 632 Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + G KY+D VRVVS S LCGGTH TG++ I+ E ++ Sbjct: 633 VMNSKEIKQFFGDKYSDIVRVVSAG------FSHELCGGTHAEFTGDLGCFRILKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA+TG+ A + L +A L+ + ++ +++ I +E ++ + + Sbjct: 687 TGIRRIEAVTGKEAEVLARQDTQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L ++ DV++ H + E +S L+ + L +KI + ++ L K Sbjct: 747 ENKLIYSLLDKVIDRCQQVEDVSYFIHHLPESESHRLQQYANCLHQKIPARLVSLWTTQK 806 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + +++DL+ A DL ++ GG GG+ AQ + +A Sbjct: 807 NGKYIIFSRISDDLVKQGLQAKDLLKILLTPC-GGRWGGKDIFAQGS---ADSLPEA 859 >gi|297624147|ref|YP_003705581.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093] gi|297165327|gb|ADI15038.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093] Length = 917 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 343/924 (37%), Positives = 503/924 (54%), Gaps = 62/924 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 ++ ++R FLEFF+ GH + PS+ L +DP L+F +GM FK F G Sbjct: 22 TSPDALRRKFLEFFRSKGHLIYPSAPL-KSDDPGLLFNVAGMQQFKPYFQGATPKFPGVE 80 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 V+ V T QKC+RAGGK +D++NVGRT RHHTFFEMLGNFSFG YFK AI AW+ LT Sbjct: 81 GVWPRVATSQKCMRAGGKDSDIENVGRTRRHHTFFEMLGNFSFGDYFKREAIGWAWEFLT 140 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGP 168 + LD RLY TVY +D+EA+ +WK GL ++ R +NFW +GP Sbjct: 141 APEWLGLDPERLYATVYLDDDEAYNIWKDEVGLPEARLSRFGEGENFWPANAIKDERSGP 200 Query: 169 CGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 CGPCSEIF+D+G G+R++EIWNLVF QF LP+ +IDT Sbjct: 201 CGPCSEIFYDRGPAYGSPDETGPNTGSGDRFVEIWNLVFTQFN-LENGVLTPLPQQNIDT 259 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 G GLER A V+ + + Y +LF+ +I+ E+++G+ Y V+HR+I DH+RS S I Sbjct: 260 GAGLERFAAVIADVKDAYATELFQPIIRRLERLSGVPYRDLESVHHRIIADHVRSVSMCI 319 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADGILPAN+G GYV++ ++RRA A LLG EP++ L+ + MG AYPE+ A+ Sbjct: 320 ADGILPANDGAGYVIKMLLRRASRQAYLLGLREPVLHQLVSGVVEAMGEAYPEVKDAQAR 379 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE +R+E+E F +TL+ G+ + G+L LG + L GDVAF L+ T+G PLD+ +++ Sbjct: 380 IEGIVRAEEESFLRTLESGIARVSGLLDELG-GDTLPGDVAFDLWQTYGFPLDLTEEMAQ 438 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 RG +D + A E RS +RA ++ L E +G T F+GY Sbjct: 439 ERG-VRVDREGYAHAREAARSLSRAARGEGALFGGTDVFGQLAEAHGETAFVGY------ 491 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V+A+VQ GE V EA G V+VV D TPFYAE GG Sbjct: 492 -----------------SARDAEAAVRALVQGGEAVSEAGEGTHVQVVLDTTPFYAEGGG 534 Query: 527 QLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 Q+GD G + +T K G+ VHHA V RG L+T + +D Sbjct: 535 QVGDAGVLEWRGGDHEGKALVTTTTKTKGGVVVHHARVLRGTLKTGQRVRAAVDPSRTE- 593 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 +H+ATHLLH AL ++LG+HV+Q GS + P+ LRFD +H +P++ +EL+ +E VN Sbjct: 594 TEKHHTATHLLHAALRSVLGTHVAQAGSLVAPERLRFDFSHPQPLSESELRRLEALVNRW 653 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--ALCGGTHVS 700 I + V R++ E+A A+GA L G KY VR+VSV E S LCGGTHV+ Sbjct: 654 IQADFTVSWRVVPLEEARAAGAMMLFGEKYGANVRMVSVTPERDPKSSVSTELCGGTHVA 713 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 TG + + I E ++ AG+RR+EA+ G+ A S+L L + A L V+ G + R+ Sbjct: 714 RTGTLGVFVITGEEAVSAGVRRVEALVGEAALSYLADLRATLAAAAKSLGVTPGELGPRL 773 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMD 814 E + + + Q A+ + +L L + ++ + +D+ L+ D Sbjct: 774 ERLQSDLKAAQRTAAELRDRLAAAQTAGESGLEVSEAGGFSYAVAQLGGLDASALRGAAD 833 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 L + + ++++ +++ ++ R +A L A+ GGGG GGRP+ Sbjct: 834 RLLARSGADLVVVGS-----GPLLVVKASDAAQARGAHAGRLVGEIARRAGGGG-GGRPN 887 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 +AQ+G + + +A+A + L+ Sbjct: 888 LAQAGVKDPAQLGRALAALPDILE 911 >gi|89897947|ref|YP_515057.1| alanyl-tRNA synthetase [Chlamydophila felis Fe/C-56] gi|123483857|sp|Q255X6|SYA_CHLFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89331319|dbj|BAE80912.1| alanyl tRNA synthetase [Chlamydophila felis Fe/C-56] Length = 875 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 328/887 (36%), Positives = 489/887 (55%), Gaps = 45/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H ++PSS + P NDP+++FTN+GM FK+IF +E Y Sbjct: 1 MLSNTLRSNFLKFYANRHHAIVPSSPIFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK++AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKKQAIAFAWEVSLSVFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW L +++I R+T DNFWSMAETGPCG CSE+ FD+G Sbjct: 121 PNLIYATVHEKDDEAFALW--EQHLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGA 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + LP +DTG GLER+ +++ Sbjct: 179 NFGKATSPLEDTDGERFLEYWNLVFMEFNRTADGSLLSLPSKHVDTGAGLERLVSIISGT 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ + LI +E+++G KY + RVI DH RS SF IADG+LP N RG Sbjct: 239 NTVFEADVLRLLISKTEELSGKKYHEDEALGAAFRVIADHTRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RR++ Y + LG+T+P + ++P+L MG AYPEL + I+E + +E+E + Sbjct: 299 YVLRKILRRSVNYGKRLGFTKPFLAEIVPSLVDSMGEAYPELRLSLSQIQEVMTTEEENY 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 K+L RG LL VL +++G+ AFKL DT+GLPLD + + + +D+ +F Sbjct: 359 FKSLHRGGNLLQQVLKSSSTSSLISGEDAFKLKDTYGLPLDEIALLAKDYNFS-VDLETF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 Q +E + R+R + T+ I+ SL ++FIGY+ L F Sbjct: 418 YQLEKEAKERSRKNIAK-SQNATDAIYDSLS-LGENSEFIGYNDLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++AIV +G+ V +K ++ TPFYAE GGQ+GD+G Sbjct: 466 -------------IEAIVSEGKQVSSLQEKEKGALILKSTPFYAEKGGQIGDSGEIFCSD 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ GI +HH V +G L ++ ++ R+++S NH+ HLLH AL Sbjct: 513 GTFVVSHTTSPKAGIVIHHGEVSQGQLSQAQAVTTQVNCIRRKRISNNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH K I+ +L SIE VN+ I +N V TR D Sbjct: 573 MTLGDHIRQAGSYVDDSKIRLDFTHPKAISPEDLASIELLVNEKIRENHQVETRNTLYSD 632 Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + G KY+D VRVVS S LCGGTH TG++ I+ E ++ Sbjct: 633 VVNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHAEFTGDLGYFRILKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA+TG+ A +E L +A L+ + ++ +++ I EE ++ ++ Sbjct: 687 TGIRRIEAVTGKEAEILAHQDNEDLNEIALILQSPRDQILHKLQNILEEKKEQAKQISEL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L ++ DV+F+ H + E +S L+ + L +KI S +I L K Sbjct: 747 ETKLIHSLLDKLIDHCQQVNDVSFLIHHLPESESHRLQQYANCLHQKIPSRLISLWTTQK 806 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K + +++DL+ A DL ++ GG GG+ AQ Sbjct: 807 NGKYIIFSRISDDLIKQGLQAKDLLKILLAPC-GGRWGGKDIFAQGS 852 >gi|325479403|gb|EGC82499.1| alanine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 870 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 322/911 (35%), Positives = 509/911 (55%), Gaps = 56/911 (6%) Query: 1 MSNV--SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M N+ + +R+ +L FF +NGH LL S LIP +D +L+ N+GM P K FTG++K Sbjct: 1 MKNLGMNELRSKYLNFFANENGHTLLKSFPLIPVDDDSLLLINAGMAPLKKYFTGEKKMK 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T+ QKCVR D++ VG+T RH TFFEMLGNFSFG YFK+ AI A+ LTKE Sbjct: 61 NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYQFLTKE 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 ++ + +++TV+ ED+EA+ +W GL +++I+R DNFW + E GPCGPCSEIF Sbjct: 117 LEISKDDIWVTVFKEDDEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFV 175 Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+G +++ +R++E+WNLVF QF + + L +IDTGMGLER+A Sbjct: 176 DRGSDRAVDENDVKPGNDDSDRFMEVWNLVFTQFNKDAQGNYTPLAHPNIDTGMGLERIA 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292 VLQ K N +++D+ +I E++ G+KY+ + V+ RVI DH ++ +FL+ADG++P Sbjct: 236 MVLQNKDNIFEVDVMVEIISEIERLAGIKYKEDKKADVSIRVIADHAKAMTFLVADGVIP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRR++RRA + +LLG + +++ + Y EL + + I+E ++ Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGEFLTNIIDKVIDTYKVEYEELAKNREKIKEIIK 355 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E++RF KT+D+GL L+ ++S + ++LNG+ AFKLYDT+G PLD+ ++IL + L Sbjct: 356 DEEDRFQKTIDQGLERLEVLISDMEEENKDVLNGEEAFKLYDTYGFPLDLTKEILEEKNL 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D FN+ + Q+ AR + + + + T F+GYD L Sbjct: 416 K-VDEEVFNEQMNIQKQTARQARKKDAGWSLDNLNT---DGIRKTDFVGYDDLD------ 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 V + I + + V G K ++ D+T FYAE GG++ D Sbjct: 466 -----------------VDGEILNIFVENDQVSSINEGSKGIIISDKTSFYAEGGGEVAD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG D ++ DVQK + F + V G + + +D R + NHSAT Sbjct: 509 TGFISSDNFEAKVMDVQKLKDIYFHY-VEVISGKISINDTAKFKVDRDKRFDIQRNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG + Q GS + + LRFD TH+K + + EL+ +ED VN+ IA+ V Sbjct: 568 HLLDQALRDVLGESIKQAGSLVDENKLRFDFTHNKALLTEELRQVEDIVNNEIAKQNFVK 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ + + GA L KY D+VRVVS+ G +S LCGG HV+ T +I++ I Sbjct: 628 KEVVDYKKSQEMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V ESS+ AG+RRIEAITG++A L D+ +K++A+ L + N+ R++ I +E Sbjct: 683 VQESSVSAGVRRIEAITGRKAYELLQNSDKSIKTIANKLNTNVNNISNRIDSIEKEIENY 742 Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + ++ K + + + S + +N + EL+ + ++ + II Sbjct: 743 KSEISRLKSTNSSDIISDLKNSVRNVKGINLLVKKFENASMDELREYENRIKNSFDNMII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +S K + V + L+D+++A + R A+V GG G GG+ + AQ+GG + +K Sbjct: 803 IFASVS--DKIVFTVSVDDKLVDKYDAGKIVREIAQVTGGNG-GGKKNFAQAGGKDISKL 859 Query: 886 DQAIAGVASFL 896 D+A+ V + Sbjct: 860 DEALNKVNEII 870 >gi|241896592|ref|ZP_04783888.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313] gi|241870184|gb|EER73935.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313] Length = 888 Score = 730 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 316/920 (34%), Positives = 484/920 (52%), Gaps = 61/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R+ FL FF+ GH++ PS SLIP NDPTL++ NSG+ K F G P Sbjct: 7 MKELSSAEVRSLFLRFFESKGHKIEPSQSLIPQNDPTLLWINSGVATLKKYFDGSVVPEN 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHT FEM+GNFS G YFKE AI AW+LLT + Sbjct: 67 HRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEAIPWAWELLTSPE 122 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F +D +LY+TVY D++A +W GL D + DNFW + E GP GP SEIF Sbjct: 123 WFGMDPDKLYVTVYPNDDQAKDIWLHKVGLPKDHLYE--EPDNFWDIGE-GPSGPDSEIF 179 Query: 177 FDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMG 229 +D+GE + E ERY+EIWNLVF QF + ++ LP +IDTGMG Sbjct: 180 YDRGEEFNDPDEAENYPGGENERYLEIWNLVFSQFNHLPGLTDNKDYPELPTKNIDTGMG 239 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--IVNHRVIVDHLRSSSFLI 286 LER+ +V Q N++ DLF LI +E ++ KY ++ ++ +VI DH+R+ +F I Sbjct: 240 LERVVSVFQHAKTNFETDLFLPLIHKTEDISGQFKYGEDDTKDISFKVIADHIRAVTFAI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGY++RR++RRA+ + R LG ++ + L+P + M S YPE+ + Sbjct: 300 GDGALPSNEGRGYIIRRLLRRAVLHGRKLGISQVFLKDLVPVVGEIMISYYPEIAKNADY 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDIL 405 I + +E+ RF KTL GL LLD V+ + I++G +AFKLYDT+G P ++ ++ Sbjct: 360 IASIVEAEEIRFNKTLTDGLSLLDDVIEQAKSKKGIIDGAIAFKLYDTYGFPYELTEEYA 419 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D F++ ++ Q+ RAR+ S + + + +Q++G+ L Sbjct: 420 TDEGLK-VDRDGFDEQMKAQQERARSARSNKASMGVQNELLTGLKT--PSQYVGWSELTV 476 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++ ++VEEA +GQ V+ +F +TPFYAE G Sbjct: 477 E----------------------QTELVNLIVDNKLVEEANAGQ-VQAIFAKTPFYAEMG 513 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + + + A H + L L +D +S Sbjct: 514 GQVADLGMIYDESGQAVAKVTDVQNAPNGQHLHTLSIIAPLFVGKQYKLDVDRPYHVAVS 573 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLL L +LG H +Q GS +T +GLR+D T++ + S +L+ +ED +N I Sbjct: 574 KNHTATHLLDQTLRNVLGEHTTQAGSLVTAEGLRYDFTYNGAVPSEKLQEVEDIINQKII 633 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 NLP+ + E A GA A+ KY ++VRVVS+ G +++ GGTH +ST E Sbjct: 634 DNLPISWIETDIESAKKLGAVAVFTEKYGEKVRVVSI-----GDYNAEFDGGTHANSTAE 688 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 + + IV E AG+RRIEA+TG A + D L A +K Q + ++ + Sbjct: 689 LGMFKIVGEQGTGAGVRRIEAVTGSGAMALFKLHDSWLAKAAEQVKAPQLSEINDKISGL 748 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ + A + +L ++ KI + ++ ++ L+S D ++ Sbjct: 749 QTALKEAERQAASLEQKLANQEADAAFANPQKINNYTLIATEMAVESMDVLRSTADTWKQ 808 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L +K ++ V E + A DL + A +GGGG GGRP MAQ+G Sbjct: 809 STPSDVLVLAANLGDKVNLLVAVAPEAVKKGIKAGDLVKSIAPAIGGGG-GGRPDMAQAG 867 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A A +L++ Sbjct: 868 GKNPAGIADAFKQAADWLQE 887 >gi|288927362|ref|ZP_06421209.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288330196|gb|EFC68780.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 872 Score = 730 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 323/919 (35%), Positives = 486/919 (52%), Gaps = 75/919 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F +FF+ GH++ S+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 1 MTANEIRDSFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRR 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK AI AW+ L L+ Sbjct: 61 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHLN 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA + W K L AD II +DNFW M ETGPCGPCS Sbjct: 121 PQDLYVTVFEGSEEEGIPRDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPCS 178 Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + + G +++ + IEIWN+VFMQF +++ LP IDTGMG Sbjct: 179 EIHLDSRSAKEKAEVPGASLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ LQ KT+NYD D+F+ +IQ Q++G+KY + V RVI DHLR+ +F IA Sbjct: 239 FERLVRSLQGKTSNYDTDVFQPVIQEISQLSGLKYGEDEKVDVAMRVIADHLRAVAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP N GYV+RRI+RRA+ YA LG M LLP EMG AYPEL + L Sbjct: 299 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQREL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I ++ E++ F +TL++G+ +L+ + L+G AF+L+DT+G PLD+ + I Sbjct: 359 IGRVMKEEEDAFLRTLEKGISMLNDEMERLKAEGKTTLDGTQAFRLFDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D F+ +++Q+ RAR + W L+E G F+GYD Sbjct: 419 CRENGL-QVDAAQFDVEMQKQKERARNA-----AAVENSDWVVLRE--GEQNFVGYDYTE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R+V +K E+V D TPFY E Sbjct: 471 YECRILRYRQVTQKKNTY----------------------------FELVLDNTPFYGEM 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G + + I D +++ V+ + + +D R + Sbjct: 503 GGQVGDCGVLVNGEETVDIIDTKRENNQSIHI---VKALPKDPKADFMACVDTDKREASA 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLL +AL +LG HV Q GS + PD LRFD +H + +T EL+ +E VND+I Sbjct: 560 ANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLIR 619 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 Q+LP+ R E+A A GA AL G KY D VRVV S CGG H STG Sbjct: 620 QDLPLDEHRNTPLEEAKAMGAVALFGEKYGDTVRVVRFGP------SCEFCGGIHARSTG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I + IVSESS+ +G+RR+EA+TG+R + ++ ++ + + + ++ G + + Sbjct: 674 RIGMFKIVSESSVASGVRRVEALTGKRCEEAMYALEDTIRGIRNLFN-NAKDLQGVIAKY 732 Query: 764 WEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE+ ++ K Q + + + + + ++ +++++ K+++ +++ Sbjct: 733 MEEHDAMRKEIEKFSAQAVERLKDSLVANAKDVNGLKVVKAVLP-INAEQAKNLVFKVRE 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 I ++ +VG + K + I+ ++D++ NA + R +AK++ GG GGG+PH A Sbjct: 792 AIPQHLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLIQGG-GGGQPHYAS 850 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + A+ Sbjct: 851 AGGKNLDGISVAVDKAVEL 869 >gi|125624689|ref|YP_001033172.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363] gi|205830128|sp|A2RME6|SYA_LACLM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|124493497|emb|CAL98475.1| AlaS protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071483|gb|ADJ60883.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000] Length = 872 Score = 730 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 319/915 (34%), Positives = 478/915 (52%), Gaps = 67/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF+ AI AW+LLT + F+ Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFE 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LYIT Y D++ + W + G+ ++ I DNFW + GP GP +EIFFD+ Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF + E LP+ +IDTGMGLE Sbjct: 176 GEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290 RM ++Q N+D DLF +I+ E+++G Y + ++ +VI DH+RS SF I DG Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +T+D G L+D +L +L + + G F+LYDT+G P+++ +++ Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDE 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G I+ F A++ Q+ RARA + GS + +L ++F+ Y+ Sbjct: 416 GFK-IEHEGFKVAMKAQQDRARAAVVKGGSMGAQN--ETLSSIEVDSKFL-YED------ 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + ++ E+V+E K ++VFD TPFYAE GGQ+ Sbjct: 466 -----------------KKAQAKLLVAIKDDELVDEVTG--KAQLVFDVTPFYAEMGGQV 506 Query: 529 GDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G ++ T + A H++ L+ + L ID + R + NH Sbjct: 507 ADHGVIKNADGQVVATVLDVQHAPHGQNLHSVETISPLKVGETYTLEIDEERRSAVVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH ++ EL IE VN++I Q+L Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T A GA AL G KY VRVV + G +S LCGGTH +T EI L Sbjct: 627 KVETIETYIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 I+ E I +G+RRI A+TGQ+A + L +A +K Q +V +V + +E Sbjct: 682 FKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDE 741 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q + +L + + V+F++ ++ D+K L+++ D ++K Sbjct: 742 LKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKEL 801 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S I++LV E K S+L+ ++ L A +L + A + G GGG+P MA +GG N Sbjct: 802 SDILVLVATIGE-KVSLLVA-SKSL--DVKAGNLVKELAPFV-DGRGGGKPDMAMAGGSN 856 Query: 882 GNKADQAIAGVASFL 896 + + VA L Sbjct: 857 AAGIPELLTAVAEKL 871 >gi|116512579|ref|YP_811486.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] gi|123320246|sp|Q02XE9|SYA_LACLS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116108233|gb|ABJ73373.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] Length = 872 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 315/915 (34%), Positives = 476/915 (52%), Gaps = 67/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF+ AI AW+LLT + F+ Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFE 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LYIT Y D++ + W + G+ ++ I DNFW + GP GP +EIFFD+ Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF + E LP+ +IDTGMGLE Sbjct: 176 GEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290 RM ++Q N+D DLF +I+ E+++G+ Y + ++ +VI DH+RS SF I DG Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGITYSPDSENMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +T+D G L+D +L +L + + G F+LYDT+G P+++ +++ Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDE 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G ID F A++ Q+ RARA + GS + +L ++F+ Y+ + Sbjct: 416 GFK-IDHEGFKVAMKAQQDRARAAVVKGGSMGAQN--ETLSSIEVDSKFL-YEDKKS--- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + ++ E+V+E K ++VFD TPFYAE GGQ+ Sbjct: 469 --------------------QAKLLVAIKDDELVDEVTG--KAQLVFDVTPFYAEMGGQV 506 Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + A H++ L+ + L ID + R + NH Sbjct: 507 ADHGVIKNADGQEVATVLDVQHAPHGQNLHSVETTSPLKVGETYTLEIDEERRSAVVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH +T EL IE VN++I Q+L Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + A GA AL G KY VRVV + G +S LCGGTH +T +I L Sbjct: 627 KVETIETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSQIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 I+ E I +G+RRI A+TGQ+A + L +A +K Q +V +V + +E Sbjct: 682 FKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDE 741 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q + +L + + V+F++ ++ D+ L+++ D ++K Sbjct: 742 LKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDANGLRNLADIWKQKEL 801 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV EK + ++ + D A +L + A + G GGG+P MA +GG N Sbjct: 802 SDVLVLVATIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSN 856 Query: 882 GNKADQAIAGVASFL 896 + + VA L Sbjct: 857 AAGIPELLTAVAEKL 871 >gi|301794425|emb|CBW36859.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV104] Length = 872 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LL + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLISPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T+ +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|199598086|ref|ZP_03211509.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001] gi|258507762|ref|YP_003170513.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG] gi|199591012|gb|EDY99095.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001] gi|257147689|emb|CAR86662.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus GG] Length = 881 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 315/916 (34%), Positives = 481/916 (52%), Gaps = 59/916 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 4 MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K FD Sbjct: 64 TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +RLY+TVY +D+ +LW+K G++ D I+ DNFW + E GP GP SEIF+D+ Sbjct: 120 FDPKRLYVTVYPKDKVTKELWRK-VGVADDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175 Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ E RY+EIWN+VF + P +IDTGMGLER+ Sbjct: 176 GQSFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q ++ DLF +I+A+E+++ K + V+ ++I DH R+ +F I DG L Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFAIGDGAL 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVI 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE+ RF +TLD G+ LL+ +++ L +D ++G AFKL+DT+G P+++ + G Sbjct: 356 ESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGADAFKLFDTYGFPVEMTNEYAEDEG 415 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + + QR RAR S ++ L + ++F G+ L Sbjct: 416 LK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH-- 470 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++AIV ++ +E +GQ +++FD+TPFYAE GGQ+ Sbjct: 471 --------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQVA 509 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + A H + + L L++D R+++S+NH+ Sbjct: 510 DHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQPYWLSVDRLRRQKVSLNHT 569 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I LP Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALP 629 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M +A GA A+ G KY D VR+VS+ G ++ GGTH ++T + L Sbjct: 630 ITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNALGLF 684 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I SES I AG+RR+EA+T + A +L Q + LK A LK+ Q NV +V ++ + Sbjct: 685 KITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQADL 744 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q A + +L + + + ++ + EL+ + D + K S Sbjct: 745 KTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLADEWKTKQAS 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L + K ++ A DL + A +GGGG GGRP MAQ+GG Sbjct: 805 DILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKKP 863 Query: 883 NKADQAIAGVASFLKK 898 A+A + + + Sbjct: 864 AGIPSALAEAKNVISQ 879 >gi|148985664|ref|ZP_01818818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|147922145|gb|EDK73267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|301800251|emb|CBW32870.1| alanyl-tRNA synthetase [Streptococcus pneumoniae OXC141] Length = 872 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESAF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELALII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|224542880|ref|ZP_03683419.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM 15897] gi|224524210|gb|EEF93315.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM 15897] Length = 868 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 329/914 (35%), Positives = 496/914 (54%), Gaps = 64/914 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + R FLE+F+K GH + PS+SLIP +DPTL++ N+G+ K F G EKP Sbjct: 1 MKKLTGNQTRALFLEYFKKQGHMVEPSASLIPHDDPTLLWINAGVAALKKYFDGTEKPAC 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT + Sbjct: 61 NRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKTEAIHFAWEFLTGEE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ +LYITVY +DE+A+ +W K G+ I++ T DNFW + GP GP SEIF Sbjct: 117 WLAFDKDKLYITVYTDDEDAYNVWTKECGVDPSHILK--TADNFWEIG-AGPGGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 +D+GE E +RY+EIWN+VF QF+ +++ LP +IDTGM Sbjct: 174 YDRGEKYDPDHIGERLFFEEMENDRYVEIWNIVFSQFDCDPTIDRKDYKELPHKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+ +++QE N+D DLF +I A+E++ +KY + + +RVI DH+R+ +F ++D Sbjct: 234 GLERITSIIQEGETNFDTDLFLPIIHATEELADVKY-AEDKMAYRVIADHIRTVTFALSD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G + GRGYVLRRI+RRA+ Y + +G +P + L+ + M Y L + ++ Sbjct: 293 GAMFDRAGRGYVLRRILRRAVRYGKNIGIDKPFLYTLVDVVVDNMKEFYDYLPEKAEFVK 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E ++ E+ F KTL +G + V++H D++++G AF LYDT+G PL++ +I Sbjct: 353 EAVKKEEVAFHKTLSQGEKKIKDVIAH-SDDKMIDGSTAFMLYDTYGFPLELTIEIAEES 411 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G +D F ++ Q+ RARA S ++KI L + + F+ YD Sbjct: 412 GFT-VDSEGFQVEMKAQQDRARAARGERESMASQKI--DLMDFTTPSTFV-YD------- 460 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + V + + GE V+E + E++ + T FYAE GGQ Sbjct: 461 ----------------TAPCKTTVIGLFKDGEKVDELT--DEGEIIVETTNFYAEMGGQC 502 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG A D ++T+V K G +H+ + G + ++ LT+D R + NH+ Sbjct: 503 ADTGSAHSDQFDAEVTNVLKAPNGQHLHYIKLTSGSVHVGDTVELTVDTARRTLIENNHT 562 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LGSHV Q GS + + LRFD TH +T EL ++ED VN+ I + + Sbjct: 563 ATHLLDAALKNVLGSHVGQAGSYLDENRLRFDFTHPSKMTKEELTAVEDMVNEYIFKGVD 622 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M +E+AI++GA AL KY D V G S LCGGTHVS+T +I L Sbjct: 623 VDVKEMPKEEAISAGATALFDEKYGDVV-----RVVRVGDFSVELCGGTHVSNTAKIGLF 677 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I E+S+ +G+RRIEA+T RA L +E L+ + + LK + +V + E Sbjct: 678 KIEMETSVGSGVRRIEAVTNVRAYKALRKSEETLEEVGTVLKANDLNKIVEKAESTMTTL 737 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ +LN + ++ V F+ + + D+ K + + +++S Sbjct: 738 NAMKKEIETLTSKLNALEAKNQASQVEEVNGVKFLYTHVEK-DNAAAKQMAFDFRDQLES 796 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GI+++ E K S + +T+DL + + A L + +VL G GGG+P AQ G P Sbjct: 797 GIVVVTSTF-EGKNSYFVGITKDLTNTYKAGVLVKAMNEVL-DGRGGGKPDFAQGGAPTL 854 Query: 883 NKADQAIAGVASFL 896 +K D+AI V S L Sbjct: 855 DKIDEAITAVKSKL 868 >gi|225859149|ref|YP_002740659.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585] gi|225720312|gb|ACO16166.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585] Length = 872 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T+ +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L +L ID R ++ Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYILAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|237651172|ref|ZP_04525424.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974] Length = 872 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 493/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T+ +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|331701288|ref|YP_004398247.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929] gi|329128631|gb|AEB73184.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929] Length = 880 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 320/918 (34%), Positives = 497/918 (54%), Gaps = 63/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKQLSSGQIRQMYLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K Sbjct: 61 PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAITWAYELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +LY+TVY +D++A W+K G++ D II I DNFW + + GP GP SEIF Sbjct: 117 WFGWDPDKLYMTVYPKDKDAKMYWEK-VGVAPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 172 Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ P E R++E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 173 YDRGKDFDNLAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIAD 288 R+ ++ Q N++ DLF +I+ +E+++ K N R+I DH R+ + I D Sbjct: 233 RVVSIFQHARTNFETDLFLPMIRKTEELSDNKKYDTNKKDNEAFRIIADHARAITVAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYV+RR++RRA+ + LG E + L+P + + S YP++++ K I Sbjct: 293 GALPSNVGRGYVIRRLIRRAIVNGQRLGINEAFLYKLVPVVGQTLESYYPDVLKQKDYIA 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE++RF +TL GL L + V+ + ++G AFKLYDT+G P+++ ++ Sbjct: 353 KVVRSEEDRFNETLTDGLKLFNQVVKDAKANHQTTIDGPTAFKLYDTYGFPVELTEEEAN 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL+ +D F +++Q+ RAR G S ++ L E ++++GYD L Sbjct: 413 DAGLS-VDKPGFEVEMQKQKDRARKARSGAKSMGVQRDL--LIEIKDPSEYVGYDTLDVD 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV+ ++V+ G VEV+FD+TPFYAE GG Sbjct: 470 H----------------------AELLEIVENEKLVDH-SKGGSVEVIFDKTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + ++ + A H + + L + L +D ++ Sbjct: 507 QVADRGVVLDEEGDKVADVVDVQHAPNGQNLHTLKTQEPLEKGKTYHLIVDKLFHSRVEK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL +L +LG H Q GS + P+ LRFD H +T +L+ +ED VN I Sbjct: 567 NHTATHLLDQSLRNVLGGHTQQAGSLVEPNYLRFDFNHFGQVTDEDLQKVEDMVNRQIFN 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + + + GA AL KY D+VRVVS+ G S CGGTHV++T +I Sbjct: 627 EIDVNTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVNNTRDI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 L IVSES + AG+RRIEA+T + A L +++LK +A LKV + RV+++ Sbjct: 682 GLFKIVSESGVGAGVRRIEAVTAKDAFKLLNDHEKELKQIAGDLKVTQIKDTPKRVDQLL 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E + L + +L + + ++ II + +L+ + D + K Sbjct: 742 GEIKDLTQKQQSLEAKLAGQQAQNVFADKKTAGKYSIITGIIKDAGMDQLRQLADTWRSK 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L S + KA++++ V ++ + A DL + A + GGG GGRP+MAQ+G Sbjct: 802 HLSDVLVLGTGSGD-KANLIVAVADEQIKAGIKAGDLIKSIAGNIKGGG-GGRPNMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G + D+A++ +L Sbjct: 860 GKDPAGLDKAMSAAVDWL 877 >gi|195977801|ref|YP_002123045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974506|gb|ACG62032.1| alanyl-tRNA synthetase AlaS [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 872 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 329/918 (35%), Positives = 498/918 (54%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I + +NFW + GP GP +EIF Sbjct: 117 WFDFPKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + L+G FKLYDT+G P+++ +++ Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLAQLKAKGQDRLDGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA ++ GS + +L ++F+ Y+ Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T V+S + I+ E E GQ +VFDQTPFYAE G Sbjct: 465 -------------------TETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L L ID++ R + Sbjct: 505 GQVADHGVIKNDKGDPVARVIDVQKAPNGQPLHTVEVLASLALNTVYTLAIDHKRRYAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHKIIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L + T + E A A GA AL G KY VRVV + G +S LCGGTH+S++ E Sbjct: 625 KALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L I+ E I +G RRI A+TGQ+A Q++ LK +A LKV Q + +V + Sbjct: 680 IGLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R LQ A+ K + + D+ +++ +S D+ L++ D ++ Sbjct: 740 SEQIRDLQKEIAELKEKAAAAQAGDVFKKVQEANDLRYIASEVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L E K +VL+ ++D R +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A V L Sbjct: 855 GSDASKLSELLAAVPEHL 872 >gi|256545145|ref|ZP_05472511.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170] gi|256399186|gb|EEU12797.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170] Length = 870 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 323/905 (35%), Positives = 501/905 (55%), Gaps = 54/905 (5%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L FF K H +L S SLIP +D +L+ N+GM P K FTG++K T+ Sbjct: 7 NELRKEYLNFFGSKKNHTVLKSFSLIPEDDESLLLINAGMAPLKKYFTGEKKMKNNRATS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R G D++ VG T RH TFFEMLGNFSFG YFK AI A++ LT ++D+ Sbjct: 67 SQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTVNLEIDKN 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L+++VY+ D+EAF +W G++ D+I+R DNFW + E GPCGP SEIF D+G Sbjct: 123 LLWVSVYENDDEAFDIWHDEIGIAKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGIEK 181 Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +++ +R++E+WNLVF QF + +E L +IDTGMGLERMA VLQ K Sbjct: 182 AVDENDNKPGNDDSDRFMEVWNLVFTQFNKNANKEYIPLAHPNIDTGMGLERMAMVLQNK 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N +++D+ +++I+ E+++ KY + ++ RVI DH ++ +F+++DGI P+NE RG Sbjct: 242 DNIFEVDVNQNIIKEIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEKRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + ++ + Y EL + I + E+E F Sbjct: 302 YVLRRLIRRAFRHGKLLGIEGEFLSSIVDCVIDSYKVEYDELTNNREKIINIIEKEEENF 361 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KT+D GL +L+ + L +IL G AFKLYDT+G PLD+ ++IL L +D Sbjct: 362 QKTIDSGLDILNSYIKELKENNKDILKGKDAFKLYDTYGFPLDLTKEILDENDLK-VDTK 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +E QR+ AR + E I +++ T F+GY+ Sbjct: 421 EFDEYMENQRNLARNARKSDAGWSLESIN---VDEFKQTDFVGYENFE------------ 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++S + + E V G K +V D+T FYAE GGQ+ DTG I Sbjct: 466 -----------INSNIIGLFDSKEKVNFIKKGHKGIIVSDKTSFYAEGGGQVADTGFIIT 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 D + ++ +VQKK + + +H+ VE G + + ++ Q R ++ NH+ATHLL A Sbjct: 515 DDAKARVYNVQKK-KDVILHYVEVEEG-KLESCNALFKVNKQRRLDITRNHTATHLLDQA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +L V Q GS + LRFD T+ +T E+K IED VN+ I + LPV IM+ Sbjct: 573 LRNLLSDEVKQAGSLVDEYKLRFDFTYPNALTKDEIKKIEDEVNEKIREQLPVKKEIMSY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +++ GA L KY D VRVVSV +S LCGG HV+++ EI++ I+ ESS Sbjct: 633 KESEKLGAIGLFEDKYKDMVRVVSV-----SDYSKELCGGCHVNNSSEILMFKIIQESSA 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +GIRRIEAITG++ +L E + S++ LK + N++ R + + EE ++L+ K Sbjct: 688 ASGIRRIEAITGKKVYEYLNNNIELINSISDELKTNPKNILSRAKSLNEEIKQLKDDIQK 747 Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K + + I +N + H D L++ + ++ K + II+ + Sbjct: 748 LKEFNEKDIYKDMESEVKDINGINLLVHKFDNEDLDTLRNFENRIKDKYKDLIIVFATV- 806 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K+ K V++ L D++NA + + +K+ GG G GG+ + AQ+GG + +K D+A+ Sbjct: 807 KDNKIIFTASVSDSLTDKYNAGKIVKEVSKITGGNG-GGKKNFAQAGGKDISKLDEALEK 865 Query: 892 VASFL 896 V + Sbjct: 866 VYDLI 870 >gi|319952367|ref|YP_004163634.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237] gi|319421027|gb|ADV48136.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237] Length = 871 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 332/919 (36%), Positives = 484/919 (52%), Gaps = 73/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR+ FLEFF+ H+++ S+ ++ +DPTLMFTN+GM FK F G P V Sbjct: 1 MKSQEIRSKFLEFFKDKEHKIVASAPMVIKDDPTLMFTNAGMNQFKEFFLGNTVPKDTRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+ LT +D Sbjct: 61 TDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAITWAWEFLTDVCKID 120 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D EA LWK I + +I+ DNFW M + GPCGPC Sbjct: 121 KTSLYVTVFEGSKDADNLDQDSEALALWKNI--VPESQILFGNKKDNFWEMGDQGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + G + + + +EIWNLVFMQ+ ++ + LP +DTGM Sbjct: 179 SEIHVDIRSAEEKAKVSGASLVNNDHPQVVEIWNLVFMQYNRRANGQLESLPAKHVDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ V+Q +NYD D+F +I+ E +T Y + + RVI DH+R+ SF I Sbjct: 239 GFERLCMVMQGVQSNYDTDVFTPIIREIEAITKSTYGKDEKIDIAIRVIADHIRAVSFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DG LP+N G GYV+RRI+RRA+ Y L EP M L+ LC MG+A+PEL K Sbjct: 299 SDGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFMYRLVNVLCDSMGAAFPELKNQKQ 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 LIE ++ E+ F KTLD+GLVLLD ++S+ +I++G AF+LYDT G P+D+ IL Sbjct: 359 LIENVIKEEEHSFLKTLDQGLVLLDSIISNAD-TKIIDGRKAFELYDTFGFPIDLTALIL 417 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RGL +D F+ A++EQ+ R+R+ S K +++ +FIGY+ L Sbjct: 418 SERGL-NLDEKGFDVAMQEQKKRSRSASE------ISKEDWTVLSSDLEQEFIGYEFLES 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + RK V G++ + VF+ TPFYAE G Sbjct: 471 NVKLVKYRK---------------------------VTSKKDGEQYQFVFNLTPFYAEGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + KK +H A + + +D + RR+ Sbjct: 504 GQVGDKGYLEAANGDVIYILDTKKENNETIHFA--KNLPKEVRETFKAVVDQKQRRRTEA 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL ILG+HV Q GS + LRFD +H +T+ EL +E VN I Sbjct: 562 NHTATHLLHQALREILGAHVEQKGSAVHSKYLRFDFSHFSKMTADELAEVERFVNARIEG 621 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 NLP+ R + + AI GA AL G KY D VR + S LCGGTHV +TG+ Sbjct: 622 NLPLEEGRNIPMQTAIEQGAMALFGEKYGDAVRTIRFG------KSIELCGGTHVKNTGD 675 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SE ++ +GIRRIEAIT + + L + L + + V + + Sbjct: 676 IWHFKIKSEGAVASGIRRIEAITSDAVKDFYSENNNVLSEVKHLLN-NSKDPVKALSSLQ 734 Query: 765 EEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE KL+ + K + DL I ++F++ + ++D+ +K + + + Sbjct: 735 EENAKLKKEVEGLLRDKAKNLKGDLLNEIQSINGIDFLAKKV-DLDAGGIKDLSFEM-GQ 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + + +L+ E KA + ++++L+ +AV + R K++ GGG GG+P A + Sbjct: 793 NKDNLFLLLAAENEGKALLSCYISKELVANKELSAVTVVRELGKLIQGGG-GGQPFFATA 851 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N +A+ ++L Sbjct: 852 GGKNPEGIAEALEQAKNYL 870 >gi|302866800|ref|YP_003835437.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029] gi|302569659|gb|ADL45861.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029] Length = 893 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 334/911 (36%), Positives = 495/911 (54%), Gaps = 72/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I+ FL F+ NGH ++PS+ L +DP L+F N+GMV F F GQ+ P Y Sbjct: 1 MKTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK AI LAWDL TK Sbjct: 61 TSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAG 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD R++ TVY +D+EA+ +W+ +G+ A++I+R DNFWSM GPCGPCSE++ Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + +RY+E WNLVFMQFE+ + P +IDTGMGL Sbjct: 176 YDRGPAY-GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA++LQ N Y+ID K ++ + ++TG +Y + V RVI DH+R Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 +S LI DG+ P+NEGRGYVLRRIMRRA+ RLLGY + + LLP M +YPEL Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPL 398 + I + +E++ F TL G +LD ++ L+GD AF+L+DT+G P+ Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKAALSGDKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457 D+ +I +GL +D F + + +QRSRA+A + +G T+ + S+ + G +F Sbjct: 415 DLTLEIAAEQGL-QVDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVEF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY L S V+A++ G V AV G +E+V D Sbjct: 474 TGYTEL-----------------------SRESRVRALLSGGAAVSAAVEGDTIELVLDT 510 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R+ + ID Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEIDV 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L +E Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVEQ 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+++ +L V + ++E+A GA AL G KY +RVRVV V G ++ LCGGT Sbjct: 631 QVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+ + ++ L+ I+SE+S+ +G+RRIEA+ G A L + + LA +V V Sbjct: 686 HVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQVA 745 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811 RVE+ + R + K + Q L + DV ++++ + ++++ Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAKDVRGVAYVGTEAPEGAAANDVRT 805 Query: 812 VMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +I + ++ V KAS+++ V + R +A DL + + G G Sbjct: 806 LAQEIRGRIDAARPAVIAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS----GRG 861 Query: 869 GGRPHMAQSGG 879 GG +AQ GG Sbjct: 862 GGSDDLAQGGG 872 >gi|91217166|ref|ZP_01254128.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755] gi|91184766|gb|EAS71147.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755] Length = 872 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 316/930 (33%), Positives = 466/930 (50%), Gaps = 93/930 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R FLEFF+ H ++ S+ ++ +DPTLMF N+GM FK F G P Sbjct: 1 MKSTL-LRRQFLEFFKSKSHTIVNSAPIVLKDDPTLMFINAGMNQFKPYFLGNSIPKETR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG YFK+ AI AW+ LT ++ Sbjct: 60 VTDSQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEFLTDVLEI 119 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+T+++ D+ EA+ LWK + + DKI+ DNFW M + GPCGP Sbjct: 120 SKDNLYVTIFEGDKVDGLQKDSEAYDLWKTL--VKEDKILLGDKKDNFWEMGDQGPCGPA 177 Query: 173 SEIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + +EIWNLVF+Q+ ++ LP IDTGM Sbjct: 178 SEIHVDLRSKEEKAKIPGKDLVNRDHPQVVEIWNLVFIQYNRKADGSLESLPAKHIDTGM 237 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLI 286 G ER+ V+Q KT+NYD D+F LI+ E +TG Y RVI DH+R+ +F I Sbjct: 238 GFERLCMVVQGKTSNYDTDVFTPLIREIETITGTTYGKTEDTDIAIRVISDHIRAVTFAI 297 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L P + L+ L +MG A+PELI K Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNIQTPFIYKLVEVLSKQMGDAFPELISQKN 357 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 L E + E++ F KTL++GL LLD +++ +I++G AF+LYDT G P+D+ IL Sbjct: 358 LCENVIHEEEKSFLKTLEQGLGLLDSIVNE-SSSKIISGQKAFELYDTFGFPIDLTTLIL 416 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G +D F L++Q+ R++A T + + + +FIGYD Sbjct: 417 SEKGY-ALDQKGFEVQLQKQKQRSKAA------AQTSSSDWVVLKTDDQGEFIGYDDTEA 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RK V G+ ++VF+ TPFY E G Sbjct: 470 DVSITKYRK---------------------------VTSKKEGELYQLVFNLTPFYPEGG 502 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G KK +H + + +D R++ + Sbjct: 503 GQVGDKGYLETPNGDTVFVIDTKKENNQIIHI--TKSLPKDLQKDFKAVVDLSQRQRTAS 560 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +ILG+HV Q GS + LRFD +H +T EL++IED VN I + Sbjct: 561 NHTATHLLHQALRSILGTHVEQKGSMVHSGYLRFDFSHYSKLTQEELQAIEDFVNARIKE 620 Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 NL R + + AI GA AL G KY D VR V S LCGGTHV +T + Sbjct: 621 NLTFEEERTIPYDVAIDKGAIALFGEKYGDTVRFVKFGN------SKELCGGTHVENTSK 674 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + I +E+S+ +GIRRIEAIT A+ L + + L + S L +V+ VE + Sbjct: 675 LWHFIINNEASVASGIRRIEAITSDAAKEFLTKESDVLSQVKSILN-KPQDVLKSVESLQ 733 Query: 765 EEYRKLQLIHAK---RKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE L+ + KL+ ++ I + F++H + +D+ +K + L + Sbjct: 734 EENTTLKKEIEQLNVLKLKQVKTEVQSQLKDINGIQFLAHQV-NLDANAMKDLAFQLGGE 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGGG 867 ++L + KA + +++ L+ +NA + + K + Sbjct: 793 HTDLFVVLAS-KQNGKALLACYISKALVESKSWNAGKIIKSLGKHIQGGGGGQAFFA--- 848 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +GG N QA+A + ++ Sbjct: 849 --------TAGGRNPEGIPQALAEAKTIVE 870 >gi|148993058|ref|ZP_01822652.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|168489547|ref|ZP_02713746.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|147928259|gb|EDK79276.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|183571933|gb|EDT92461.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|332073690|gb|EGI84169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17570] Length = 872 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ + +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDSSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T+ +SS + AIV V G ++F +T FYAE G Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|319947341|ref|ZP_08021574.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641] gi|319746583|gb|EFV98843.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641] Length = 872 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 325/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y D +++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPADTDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G + +++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDATGNVVATVTDVQKAPNGQALHTVEVHAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAVAGDVFKHVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|149019336|ref|ZP_01834698.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|225854830|ref|YP_002736342.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA] gi|147931206|gb|EDK82185.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|225722331|gb|ACO18184.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA] Length = 872 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PCITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|284097293|ref|ZP_06385431.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3] gi|283831199|gb|EFC35171.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3] Length = 734 Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats. Identities = 339/761 (44%), Positives = 458/761 (60%), Gaps = 35/761 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N +R +FL+FF H ++PS+SL+P DPTL+FTN+GM FK +F G+E+ Y Sbjct: 4 NAHELRQSFLDFFHAADHAVVPSASLLPQADPTLLFTNAGMNQFKRVFLGEEQRSYSRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ A+ WD LTK L Sbjct: 64 SVQRCMRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKKDAVHYGWDYLTKTLGLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L++TV+ +D+EAF+LW+ G+ A +I+R+ DNFW M ETGPCGPCSEI DQG Sbjct: 124 DQLWVTVFQDDDEAFELWENSVGVPAARIVRLGYKDNFWQMGETGPCGPCSEIHIDQGAA 183 Query: 183 IPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + G + +RY+EIWNLVFMQF++ + LPK SIDTGMGLER+A V+Q Sbjct: 184 LGCGRASCAVGCDCDRYLEIWNLVFMQFDRDAEGNLHPLPKPSIDTGMGLERLAAVVQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY DLF L+ A TG Y + + RVI DHLR+ +F+I DGILP+NEGRG Sbjct: 244 DSNYATDLFMPLLSAIAVRTGCGYGKDEASDRSMRVIADHLRAITFMIVDGILPSNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA + RLLG TEP + L + TEM AYPEL QA + + E+ERF Sbjct: 304 YVLRRILRRASRHGRLLGVTEPFLYELTGTVATEMEGAYPELAQAGDTCRKVVEGEEERF 363 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD+GL +L+ +++ L+G+ FKLYDT+G PLD++++ +GL D+ F Sbjct: 364 IGTLDQGLPILNRMVAEAEAGS-LDGESVFKLYDTYGFPLDLIEEAAREQGL-VADLEGF 421 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +ALE QR RAR ++ + + L ++ T+F+GY L+ Sbjct: 422 QRALEAQRDRARKSAVFVAEQ-EKPFITELTQRLRPTEFLGYQALQS------------- 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S+V+A+++ + +E V G VE+V D TPFY E GGQ+GD G G Sbjct: 468 ----------ESVVQAMLKGDALADEVVEGDDVELVLDATPFYPEGGGQVGDQGTLTGRE 517 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R+QI + K + + +H V G +RT L T+D R + NH+ATHLLH AL Sbjct: 518 GRIQIRETTKVSGKLLLHKGTVVAGRVRTGEPLAATVDSVTRHGAARNHTATHLLHAALR 577 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG V Q GS + P+ LRFD ++ KP+ + +L+ IE VN + N V T +M ++ Sbjct: 578 EVLGPQVKQYGSLVAPNRLRFDFSYFKPLRTRDLEEIEAMVNFHVLGNTFVRTDVMGIQE 637 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA A G KY +RVRVV V G S LCGGTH TGEI I SE I + Sbjct: 638 AIHAGALAFFGDKYGERVRVVGV-----GEFSKELCGGTHCQHTGEIGSFRITSEGGIAS 692 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 G+RRIEA+TG A H + ++ LA LK S VV + Sbjct: 693 GVRRIEALTGTGALDHGKKLESDVRELAELLKSSPSEVVPK 733 >gi|288924681|ref|ZP_06418618.1| tRNA ligase [Prevotella buccae D17] gi|315607688|ref|ZP_07882682.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574] gi|288338468|gb|EFC76817.1| tRNA ligase [Prevotella buccae D17] gi|315250624|gb|EFU30619.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574] Length = 881 Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats. Identities = 328/928 (35%), Positives = 495/928 (53%), Gaps = 83/928 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59 M + +R ++ +FF+ GH+++ S+ ++ +DPTLMFTN+GM +K+I G + P Sbjct: 1 MMTANEVRESYKKFFETKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L Sbjct: 61 RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLH 120 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L+ LY+TV++ D+EA + W K + AD II +DNFW M +TGPCGP Sbjct: 121 LNPEDLYVTVFEGSPEENLSRDDEAARFWGK--HVPADHIINGNKHDNFWEMGDTGPCGP 178 Query: 172 CSEIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSEI D + G +++ + IEIWN+VFMQ+ ++ LP IDTG Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278 MG ER+ +LQ K +NYD D+F+ +I+ E++TG+KYE + V RV+ DH Sbjct: 239 MGFERLVRMLQGKHSNYDTDIFQPIIKEIERLTGLKYEDAHGDSRTQTNIDVAMRVVADH 298 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 LR+ +F IADG LP+N GYV+RRI+RRA+ YA L E M L+P L EMG+AY Sbjct: 299 LRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNRKEAFMYKLVPVLVQEMGAAY 358 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395 PEL + LI ++ E++ F +TLD+G+ LL+G + L L+G AF+L+DT+G Sbjct: 359 PELPAQQELIARVMKEEEDSFLRTLDKGINLLNGDMDELKAHGKTELDGAAAFRLFDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ + I G +D F++ +E+Q++RAR ++ W +KE G Sbjct: 419 FPLDLTELICRENGYT-VDGKGFDEEMEKQKARARNAAV-----VENGDWEVVKE--GEQ 470 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +F+GYD + RKV +K E+V Sbjct: 471 EFVGYDYTEYECHILRYRKVTQKKNTF----------------------------FELVL 502 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D TPFY E GGQ+GDTG + +++ D +++ V++ + + Sbjct: 503 DHTPFYGEMGGQVGDTGVLVSADETVEVIDTKRENNQSIHI---VKQLPKDIRADFMACV 559 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ATHLL +AL +LG HV Q GS ++ D LRFD +H + +T EL+ + Sbjct: 560 DIDKRDGSAANHTATHLLDYALKQVLGDHVEQKGSYVSADTLRFDFSHFQKVTDEELRQV 619 Query: 636 EDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 E VND+I Q+ P+ R E+A A GA AL G KY D+VRVV S C Sbjct: 620 ERIVNDMIRQDFPLDEHRDTPLEEAKALGAIALFGEKYGDKVRVVRFGP------SCEFC 673 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GG H STG I I+ ESS+ AGIRRIEA+TG+ + + L + + + Sbjct: 674 GGIHAKSTGRIGFFKIIGESSVAAGIRRIEALTGKACEEAIYALQDTLTDVRALFN-NAK 732 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-----MSHIISEVDSKEL 809 ++ G V + EE+ ++ K + Q VE L + V + + E++ Sbjct: 733 DLKGVVGKYIEEHDAMKKDIEKFRAQ-TVERLKDELVKRVKLMNGVQVVRAVIEMEPSAA 791 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867 K ++ +++ + ++ ++G +K + +++++D++ NA + R +AK++ GG Sbjct: 792 KDLVFKIREALPENLLCVIGSKAHEKPMLSVMLSDDMVKGHSLNAGQMIREAAKLIQGG- 850 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASF 895 GGG+PH AQ+GG N + + A+ V Sbjct: 851 GGGQPHYAQAGGKNIDGLNAAVDKVIEL 878 >gi|288803286|ref|ZP_06408720.1| tRNA ligase [Prevotella melaninogenica D18] gi|288334327|gb|EFC72768.1| tRNA ligase [Prevotella melaninogenica D18] Length = 887 Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats. Identities = 323/935 (34%), Positives = 490/935 (52%), Gaps = 90/935 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 TDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGNYFKEGAIDYAYEYLVDVLH 120 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 LD + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCGP Sbjct: 121 LDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGP 178 Query: 172 CSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSEI D G +++ + IEIWN+VFMQF ++ L IDTG Sbjct: 179 CSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTG 238 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272 MG ER+ ++Q+K +NYD D+F +I E+++G KY + Sbjct: 239 MGFERLVRLMQDKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAM 298 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVR 358 Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFK 389 EMG+AYPEL + LI ++ E++ F +TL++G++LL+G + L L+G AF+ Sbjct: 359 EMGTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQLDGKEAFR 418 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 L+DT+G PLD+ + I G +D FN+ +E+Q++RAR + W L+ Sbjct: 419 LFDTYGFPLDLTELICAENGYT-VDEKQFNEEMEQQKARARNA-----AAVENGDWEVLR 472 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E G +F+GYD + RKV +K Sbjct: 473 E--GEQEFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 E+V D TPFY E GGQ+GD G + + + I D +++ V+ E Sbjct: 504 -YELVLDYTPFYGEMGGQVGDQGVLVSEDETISIIDTKRENNQSVHI---VKELPKNLEA 559 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 DFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITD 619 Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 EELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFGP----- 674 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L S Sbjct: 675 -SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLRSM 733 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISE 803 + ++ + + EE ++ + Q + V+ + ++ Sbjct: 734 FN-NAKDLKAVLTKFVEENDSIKKELESFRTQAVSRAAKNMVEHAETVNGVHVVKTVLP- 791 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAK 861 +D K ++ +++ + ++ ++G E + + I++++D++ NA + R +AK Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYNLNAGKIIREAAK 851 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ GG GGG+PH AQ+GG N + A+ V + Sbjct: 852 LIQGG-GGGQPHYAQAGGKNADGIRSAVDKVIELI 885 >gi|254430394|ref|ZP_05044097.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001] gi|197624847|gb|EDY37406.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001] Length = 907 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 335/925 (36%), Positives = 493/925 (53%), Gaps = 69/925 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR+ FL F+++ GH +PS+SL+P +DPT++ T +GM+PFK +F GQ + T Sbjct: 18 SGADIRSAFLAFYEQRGHRRMPSASLVP-DDPTVLLTIAGMLPFKPVFLGQAERPAPRAT 76 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L Sbjct: 77 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSP 132 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L ++V+ ED EA +W+++ G++ +IIR+ DNFW+ TGPCGPCSEI++D Sbjct: 133 ANLVVSVFREDHEAEAIWREVVGVNPRRIIRMDEADNFWASGPTGPCGPCSEIYYDFRPE 192 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + G E+ R+IE +NLVFMQ+ + + L SIDTGMGLERMA +LQ N Sbjct: 193 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGSLTPLANRSIDTGMGLERMAQILQGVPN 251 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI+ + + G+ Y + +VI DH R+ + LI DG+ +N GRGY Sbjct: 252 NYETDLIYPLIETAAALAGVDYRQLEQKGQTSLKVIGDHSRAITQLIGDGVSASNLGRGY 311 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG P + + A +M AYP+L + + +I L E+ RF Sbjct: 312 ILRRLLRRVVRHGRLLGIDRPFLKTMGEAAIAQMRQAYPQLDERRTVILAELEREEGRFL 371 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ ++GD AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 372 ETLERGEKLLADVLA--TGPRQISGDQAFELYDTYGFPLELTQEIAEEQGLT-VDLEGFE 428 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR RA+A ++ + E I ++ AT F GY+ L Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAID-AVAADLEATAFRGYEALEHP------------- 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--- 536 S V A+V GE E A +G V++V D TPFY E GGQ+GD G +G Sbjct: 475 ----------SCVLALVVNGEPAERAAAGDAVQIVLDSTPFYGEGGGQVGDRGVLLGGGD 524 Query: 537 ----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + + + +FVH VERG L + +D RR+ NH+ATHL Sbjct: 525 QTAVDAGVIVSIEAVSRNRSVFVHSGRVERGALAVGDLVTARVDGACRRRAQANHTATHL 584 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ + Q GS + D LRFD + +T EL+ IE +N I++ +V Sbjct: 585 LQAALKQVVDPDIGQAGSLVDFDRLRFDFHCPRAVTPEELERIEALINAWISEGHALVVE 644 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M + A A+GA A+ G KY + V D S LCGGTHV++T EI + IV+ Sbjct: 645 EMAIDQARAAGAVAMFGEKYGEVV-----RVVDVPGVSMELCGGTHVANTAEIGVFKIVA 699 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AGIRRIEA+ G S+L +D +K+L K G +V RV + ++ + Q Sbjct: 700 ESGVAAGIRRIEAVAGPAVLSYLQERDAVVKALGDRFKAQPGEIVERVTALQDDLKASQK 759 Query: 773 IHAKRKLQLNVEDLSC---------------HKIADVNFMSHIISEVDSKELKSVMDALQ 817 A + +L + + + + V+ L++ L Sbjct: 760 ALASARQELALARSAALVTQAEAVGAAAAGDGGGEPFQLLVARLDGVEGAALQNAAQELV 819 Query: 818 KKIQSGIIMLVGISKE----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRP 872 ++ + +++G + K ++ L+ A AK GGGG GGRP Sbjct: 820 DQLGATAAVVLGGLPDPTDLGKVVLVAAFGAALVAAGQKAGPFIGAVAKACGGGG-GGRP 878 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 ++AQ+GG NG D A+ L+ Sbjct: 879 NLAQAGGRNGAALDGALEQARQSLR 903 >gi|188589293|ref|YP_001920519.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|251779892|ref|ZP_04822812.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|205830029|sp|B2V3W2|SYA_CLOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|188499574|gb|ACD52710.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|243084207|gb|EES50097.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 879 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 317/911 (34%), Positives = 506/911 (55%), Gaps = 50/911 (5%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+FF+ H L S SL+P ND +L+ N+GM P K FTG ++P Sbjct: 1 MKFTKTNDLRDAYLKFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + +TT QKCVR G D+DNVG T+RH TFFEMLGNFSFG YFK+ I AW+ LT Sbjct: 61 KRITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L + +LY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F Sbjct: 117 ELPKEKLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFS 175 Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 + + +P E + ++ IE+WNLVF QF+ K L +IDTGMGLER+A V Sbjct: 176 RTDEVPTNSEKFVELSDEDKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVV 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q K + ++ID +++++ + +KY +N V+ R+I DH+RS +F+I+D I+P+N Sbjct: 236 MQNKNSIFEIDTLENILKEVGNLANVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + + LG + + +L + + GSAY +L K I++ ++ E Sbjct: 296 EGRGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCGSAYSDLEAKKDYIKKVIKIE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F +TLD G+ +L+ ++S L +++L G FKLYDT G P+++ ++IL Sbjct: 356 EDKFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEIL-EDEDLS 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++ ++EQR RAR+ T+ + T F GY+ Sbjct: 415 LDEDGFHKEMKEQRERARSARKTSNYMGTDVKTLDVISGEIETTFDGYEN---------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + + VK +V + + G VV D TPFYAE GGQ+GDTG Sbjct: 465 -------------DSLIAEVKTLVNGEDFTNSIIEGNNAVVVTDVTPFYAEMGGQIGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + ++ D +K G +H G L+ + L +D R + NH+ATHL Sbjct: 512 TIYNDNFKGKVLDTKKNIGGKIIHFVEAISGELKVGDKVKLEVDNARRENIKRNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LGSHV Q GS ++ D LRFD +H + + EL +E VN+ I PV T Sbjct: 572 LDAALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTT 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A SGA + KY ++VRVV G +S LCGGTH+ +TG+I L I+S Sbjct: 632 EMDLQEAKNSGAVGIFDDKYAEKVRVV-----CAGEYSKELCGGTHIDNTGKIGLFKIIS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I AG RRIEA+TG A + + E LK ++ LK S+ + ++++ +E ++ + Sbjct: 687 ENGIAAGTRRIEAVTGIEAYKWVNEKAELLKHISGKLKCSEKEITIKLDQQSKEIKEKEK 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K + ++ S + +N +++ +++VD + L+ + + ++ K+ + + +L Sbjct: 747 EITNLKSKFASMEINDIINSVKDVKGINVVTYALTDVDGEALRGLCEKVRDKVNNSLTLL 806 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 S + K + + ++ + + + + +A +LGGGG GGRP MAQ+GG K Sbjct: 807 TS-SIDGKVVICAMADKEAVSKGAHCGKVIKEAATILGGGG-GGRPDMAQAGGKLPEKIS 864 Query: 887 QAIAGVASFLK 897 A+ V ++ Sbjct: 865 DALDSVYKIVE 875 >gi|291513841|emb|CBK63051.1| alanyl-tRNA synthetase [Alistipes shahii WAL 8301] Length = 873 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 320/928 (34%), Positives = 478/928 (51%), Gaps = 93/928 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++PS+ ++ DPTLMFTN+GM FK+IF G Y Sbjct: 1 MESNKIRQAFLDFFESKGHAIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+S+G YFK+ AI+ AW+LL + L Sbjct: 61 ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLHGVYGLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y TV++ D+EA+ W + L AD IIR +DNFW M ETGPCGPCS Sbjct: 121 AERMYATVFEGSEEDGVPFDQEAYDYWLRY--LPADHIIRGNKHDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI FD + G + + IEIWNLVFMQF ++ LP ++DTGMG Sbjct: 179 EIHFDLRDEAEIAAKPGREMVNASHPQVIEIWNLVFMQFNRKANGSLEELPARNVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ +LQ K +NYD D+F+ I +++G KY + V RVI DHLR+ +F IA Sbjct: 239 FERLCMILQGKKSNYDTDVFQPTIGRIAEMSGKKYGEDRKADVAMRVIADHLRAIAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG+TEP + L+P L +MG +PEL + L Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTLCRLVPGLVGQMGGQFPELKAQQGL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ + E+ F +TL G+ LLDGV+S E+++G AF+LYDT G P+D+ + I Sbjct: 359 IEKVIEEEESSFLRTLATGINLLDGVISRTKGEGKELISGKDAFELYDTFGFPIDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +G G+D+ +F + L+ Q+ R+R + + + F GYD L Sbjct: 419 AREQG-VGVDLAAFEKELQAQKERSRNA------AAVDTDDWVELFPIRESVFTGYDTLT 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R+V + ++VFD+TPFY + Sbjct: 472 EKVRIARYRRVTSKGKTS----------------------------YQLVFDRTPFYGNS 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G R+ + +K+ I V + +D + R+ + Sbjct: 504 GGQVGDIGMIESANERIPVVATEKENGLIIHI---VNQLPENPAAEFTARVDPEKRQAAA 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHL+H AL +LG+HV Q GS +TP+ LRFD +H + +T EL+ +E VN I Sbjct: 561 NNHTATHLMHEALRKVLGAHVEQKGSLVTPEILRFDFSHFQKVTPEELRKVEQLVNRAIR 620 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N P+V R +E+A GA L G KY D+VR+V S LCGGTH +TG Sbjct: 621 ANYPLVENREATKEEAEKCGAMMLFGEKYGDKVRMVRFGS------SVELCGGTHTGATG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I I+SES+I AG+RRIEA+TG++A L ++ ++++A +L VV V+++ Sbjct: 675 NIGFFKILSESAISAGVRRIEAVTGEQAEKVLYAAEDTMRNIAEYLNNP--QVVQAVKKM 732 Query: 764 WEEYRKLQLIHAKRKLQLNVE--DLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKK 819 E L + + + D + + M ++ D +K + L+++ Sbjct: 733 LESNETLSKEVESMRREQVAQWADKIAASTPERHGMQLFATQTDRRPDFVKDLAYNLRQR 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM---- 874 + ++ + + K ++ +++ +++ NA + R +AK+ M Sbjct: 793 SPRLVFVVGSVW-DGKPTLTVMLGDEITACGVNAGAVVREAAKL-----------MQGGG 840 Query: 875 ------AQSGGPNGNKADQAIAGVASFL 896 A +GG N + AI + Sbjct: 841 GGQAFFATAGGKNPDGLQAAIDKAVELI 868 >gi|260942927|ref|XP_002615762.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720] gi|238851052|gb|EEQ40516.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720] Length = 964 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 300/966 (31%), Positives = 485/966 (50%), Gaps = 92/966 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + S++R+TFL++F+ H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 19 SASTVRSTFLDYFKNKSHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPTSEFAT 78 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLT+ Sbjct: 79 LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 138 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD+ RLY+T ++ DE EA + W G++ D I+ +DNFW M + GPC Sbjct: 139 YKLDKDRLYVTYFEGDEKNGLEPDLEAKEYWLS-VGVAPDHILPGDAHDNFWEMGDQGPC 197 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +E+WN+VF+Q+ ++ LP IDTGMG Sbjct: 198 GPCSEIHYDRI-GGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKPLPSKHIDTGMG 256 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F+ + + +TG++ +RVI DH+R Sbjct: 257 FERLVSVLQDKSSNYDTDVFQPIFEEIRNITGVRPYTGKFGAEDVDGIDTAYRVIADHVR 316 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F I+DG +P NEGRGYVLRRI+RR Y R L+ + S +P Sbjct: 317 TLTFAISDGGVPNNEGRGYVLRRILRRGARYVRKYMNCPIGSFFQQLVDVVIENNSSIFP 376 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396 E+ + K +++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+G Sbjct: 377 EIAKNKDMLKEILMEEEVSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 436 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID +F +A EE R ++A + G+ + +L E Sbjct: 437 PVDLTRLMAEEAGLK-IDEEAFEKAKEESREASKATNTKGGATLIKLDVHALSE------ 489 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + + S + AI + V+ GQ+ ++ Sbjct: 490 -----------LDNNESITKTNDVYKYGLDNIESKIVAIYDGSKFVDTISEAGQQFGIIL 538 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+TPFYAE GGQ DTG + DG + +H + G L+ +++ T Sbjct: 539 DRTPFYAEQGGQEYDTGSLVIDGSAEFAVTNVQSYGSYILHTGTMVEGTLKLNDNVIATY 598 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG + Q GS + P+ LRFD +H + +T EL+ + Sbjct: 599 DELRRWPIRNNHTGTHVLNFALKEVLGDGIDQKGSLVAPEKLRFDFSHKQALTPKELEQV 658 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ ++II N V + A +G A+ G Y D VRVVS+ Sbjct: 659 ENISSEIIKSNKQVYAEEVELTKAKQIAGVRAVFGETYPDPVRVVSIGVAVADLLKDPTN 718 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736 +D S CGGTHV+ TG+I I+ ES I GIRRI A+TG A+ Sbjct: 719 QDWTKLSIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTGHEAQEVQRIAREFSA 778 Query: 737 ------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIH 774 ++++ K L LK +V+ + + I + + Q Sbjct: 779 SLDSADKLSFGPEKEQRAKELGVALKQLSISVLDKQKLNEKFTKLDKSIKDHLKAKQKEE 838 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +K+ L+ L + + F + ++K + ++ ++K+ + + L+ + E Sbjct: 839 SKKTLEAVNGWLKDEEKSKTAFFVAHVPISANAKAITEAINLIKKQHKDKSLYLLTGTSE 898 Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K + ++++ + +A +LA+ + + GG GG+ ++ Q G + D A+ V Sbjct: 899 -KVAHGCYISDEAISKGIDASELAKAVSAHI-GGKAGGKGNVVQGMGDSPEGIDAAVETV 956 Query: 893 ASFLKK 898 L + Sbjct: 957 TKLLAE 962 >gi|315613410|ref|ZP_07888319.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296] gi|315314645|gb|EFU62688.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296] Length = 874 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 324/920 (35%), Positives = 494/920 (53%), Gaps = 70/920 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G + +++ L ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG--EIVEEAVSGQKVEVVFDQTPFYAE 523 + + S + AIV VE G ++F +TPFYAE Sbjct: 462 ----------------NYNASQLPSKLVAIVVDNAEAEVETVSEG-TASLIFAETPFYAE 504 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ D G + + ++ T +KA H + L + + L+ID R + Sbjct: 505 MGGQVADHGQILDESGKVVATVTDVQKAPNGQPLHTVEVLAPLSLDKNYKLSIDKNRRHR 564 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE VN+ Sbjct: 565 VMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEK 624 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I + + V T + + A GA +L G KY VRVV++ G +S LCGGTHV +T Sbjct: 625 IWEAIAVETVETDIDTAKEMGAMSLFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNT 679 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761 EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V +VE Sbjct: 680 SEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVE 739 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + E+ R+LQ +A+ K + + + +++ +S D+ L++ D Sbjct: 740 GLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNW 799 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++K S +++LV + K +VL+ + +A +L + A ++ G GGG+P MA Sbjct: 800 KQKDYSDVLVLVAA-IDDKVNVLVASK---IKEVHAGNLVKELAPIV-DGRGGGKPDMAM 854 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N K + + VA L Sbjct: 855 AGGSNQAKIQELLDAVAGKL 874 >gi|225868896|ref|YP_002744844.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] gi|225702172|emb|CAW99880.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] Length = 872 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 500/918 (54%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I + +NFW + GP GP +EIF Sbjct: 117 WFDFPKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGQAYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L+G FKLYDT+G P+++ +++ Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLAQLKEKGQDRLDGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA ++ GS + +L ++F+ Y+ Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T V+S + I+ E E GQ +VFDQTPFYAE G Sbjct: 465 -------------------TETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L ID++ R + Sbjct: 505 GQVADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEVLASLALDTVYTLAIDHKRRYAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHKVIGKHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L + T + E A A GA AL G KY VRVV + G +S LCGGTH+S++ E Sbjct: 625 KALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L I+ E I +G RRI A+TGQ+A Q++ LK +A LKV Q + +V + Sbjct: 680 IGLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R LQ A+ K + + D+ +++ +S D+ L++ D ++ Sbjct: 740 SEQIRDLQKEIAELKEKAAAAQAGDVFKKVQEANDLRYIASEVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + S +++L E K +VL+ ++D R +A +L + A ++ G GGG+P MA +G Sbjct: 800 RDYSDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A V L Sbjct: 855 GSDASKLSELLAAVPEHL 872 >gi|326693841|ref|ZP_08230846.1| alanyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 338/931 (36%), Positives = 504/931 (54%), Gaps = 72/931 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKELTSAEVRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFKE I AW+LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEVIPWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD+ RLY+TVY +D+EA K+W++ + L A I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDKERLYVTVYPKDQEAKKIWEEKTDLPAGHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G E ERY+EIWN+VF QF + + LP +IDTG Sbjct: 174 FDRGPAFQDLPDDDPEMYPGGENERYLEIWNIVFSQFNHLPGMTDNSQYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282 MGLER+ +V Q N+D DLF +IQA+E + KY+G + +VI DH+R+ Sbjct: 234 MGLERVVSVFQNGRTNFDTDLFLPIIQATEALSPNFKYDGTKDSDSNTSFKVIADHIRAI 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I+DG +P+NEGRGYV+RR++RRA+ + + LG + L+P + M S YPE+++ Sbjct: 294 TFAISDGAMPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTQLVPIVGEIMQSYYPEVLE 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 I++T+ +E++RF TL GL LLD V+ + ++G AFKL DT+G PL++ Sbjct: 354 NAARIQKTVAAEEKRFNATLTGGLALLDDVIAAAKADGKTQISGADAFKLSDTYGFPLEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q+ GL +D+ FN+AL+ QR+RARA S + L + A++++G+ Sbjct: 414 TQEQAAEAGLT-VDVDGFNEALQAQRARARAARSNDKSMGVQNAV--LTDLKVASEYVGW 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-----GEIVEEAVSGQKVEVVF 515 + S+ V AI+ Q ++++AV+G++ ++VF Sbjct: 471 SEIAVD----------------------SAEVVAIIGQDADGIDALLDQAVAGEQRQLVF 508 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYAE GGQ+ D G + + + +KA H + + ++ L Sbjct: 509 DKTPFYAEMGGQVADFGTVLNKQGDVVAEVIDVQKAPNGQHVHTVNVLADITLGENVDLR 568 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D +S NH+ATH+L AL +LG V Q GS + PD LRFD T+ P+++A+L Sbjct: 569 VDMARHIAVSKNHTATHMLDQALRNVLGGDVHQAGSLVEPDYLRFDFTNEGPVSAADLDR 628 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE VN IA+N P+ + E A GA A+ G KY D VRVVS+ G + Sbjct: 629 IEAMVNAEIAKNAPISWMETDIETAQQMGAVAVFGEKYGDVVRVVSI-----GDFNKEFD 683 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQ 753 GGTH ST E+ L IVSES I AG+RRIEA+TG A + ++ LK++A+ +K Sbjct: 684 GGTHAQSTAELGLFKIVSESGIGAGVRRIEAVTGLEALALYKAEENALKAVAAQVKAQKI 743 Query: 754 GNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKE 808 +V ++ E + Q + KL D + + N ++I++++ Sbjct: 744 TEAPAKVADLQAELKATQRTLESVEAKLANAAADEVFNDVKTSNGHTYIVAQLPVSGMDG 803 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGG 867 L+ V D + S +++L + K ++++ + + A DL + +GGGG Sbjct: 804 LRQVADNWKATYPSEVLVLAA-DIDGKVNLIVAASPEANAAGIKAGDLIKAITPRVGGGG 862 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP MAQ+GG N A A VA FL + Sbjct: 863 -GGRPDMAQAGGKNPAGIPDAFAAVADFLAQ 892 >gi|312379940|gb|EFR26076.1| hypothetical protein AND_08072 [Anopheles darlingi] Length = 975 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 296/967 (30%), Positives = 456/967 (47%), Gaps = 83/967 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 S IR FL+FF + H + SSS+IP +DPTL+F N+GM FK IF G P Sbjct: 12 TASQIRKIFLDFFAEKKHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPSSEMAR 71 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AW+LLT+ Sbjct: 72 WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWELLTER 131 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L + RLY+T + + D E +W ++ G+ ++ + DNFW M ETGPC Sbjct: 132 LRLPKDRLYVTYFGGHPESGLEPDLECRSIWIEL-GIPEAHVLPGSMKDNFWEMGETGPC 190 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ FD+ +++ +EIWNLVF+Q+ ++ +LPK ID GMG Sbjct: 191 GPCSELHFDRIGGGRSVPELVNQDDPDVLEIWNLVFIQYNREQDGSLKLLPKKHIDCGMG 250 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 ER+ +V+Q+K +NYD D+F L A G + + +RV+ DH R Sbjct: 251 FERLVSVIQDKRSNYDTDVFVPLFDAIRAGTGAPPYGGRVGAEDTDGVDMAYRVLADHAR 310 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G +PE Sbjct: 311 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVDTVVELLGDTFPE 370 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G P+D Sbjct: 371 VRKDPQHIKNVIGEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD 430 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + Q + + ++ ID+ + +A E ++ + T + ++ E Sbjct: 431 LTQLMAEEKEMS-IDMEGYERAKHESYLISQGK-EKSKTATIDLDVHAISELQAKQL--- 485 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 R + G + A+ G VEE +GQ+ V+ D+T Sbjct: 486 --APTDDSTKYRYRAESTDPQAQYVFEGCRGRIVALRFGGAFVEEVTAGQECGVILDKTN 543 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE+GGQ+ D G + G +V G +V H V G LR + +D Sbjct: 544 FYAESGGQIYDQGYLVKVGDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVDCHLDTV 603 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R+ NHSATH L+H+L +LG Q GS + P+ LRFD T+ +T ++ E Sbjct: 604 RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKAAMTIEQVGEAERL 663 Query: 639 VNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YEDG 686 +++ +N+ V + N G ++ Y D VRV+S + G Sbjct: 664 TREVVRKNVQVFAKETNLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLAADPTSDAG 723 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL- 745 ++S CGGTH+ +G ++ I SE +I GIRRI A+TG A L + + + Sbjct: 724 VLNSVEFCGGTHLHQSGHMVDFVITSEEAIAKGIRRIVALTGPEALKALQKTESLEQEVR 783 Query: 746 --------ASFLKVSQGNVVGRVEEIWEE-----------------YRKLQLIHAKRKLQ 780 + + V R+ E+ E+ + L+ R+ Sbjct: 784 QLREKIEASGTVTTGAKEFVRRIVELTEDVSQAVIPYVKKDELRTVLKNLKKTLDDRERA 843 Query: 781 LNV---------EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGI 830 D + H + ++K L S + ++K + V + Sbjct: 844 AKAAVSVEVIVRAKELSEANRDAPVLVHRLEAFSNTKALDSALKEVRKINPEQSALFVSV 903 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ K L V + +++ A + A L GG GGG+P AQ+ G + KAD+ Sbjct: 904 DEDAGKIFCLASVPKGAVEKGLKANEWISHVAP-LMGGKGGGKPESAQASGGSWQKADEI 962 Query: 889 IAGVASF 895 + SF Sbjct: 963 LELARSF 969 >gi|319939471|ref|ZP_08013831.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] gi|319811457|gb|EFW07752.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] Length = 872 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 324/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D +++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWIS-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPEHQGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G ++ L + +++G FKLYDT+G P+++ ++I Sbjct: 353 EKIIKSEEESFARTLHSGQHFAQSIVEELKEKGQSVISGTDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASVVKGGSMGMQN--ETLQNITAESHF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +S+ + AIV + VEE SG K +VF +TPFYAE G Sbjct: 462 ----------------NYEKEALSAKLVAIVADDKEVEEVTSG-KAYLVFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + +KA H + L L ID+ R ++ Sbjct: 505 GQVADHGQIFDLAGNLVAQVVDVQKAPNGQPLHTVEVVAPLALNQEYKLEIDHNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG H +Q GS + LRFD TH + +T+ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQEVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + + T + + A GA AL G KY VRVV++ G +S LCGGTH+ +T E Sbjct: 625 EAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHMKNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+T + A +++ LK++A+ LKV Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDALKAIATTLKVPQMKEVSRKVEAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + + +F++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----IHAGNLIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N + + V L Sbjct: 855 GSNQAAIQELLTAVPEKL 872 >gi|255994094|ref|ZP_05427229.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989] gi|255993762|gb|EEU03851.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989] Length = 878 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 331/913 (36%), Positives = 497/913 (54%), Gaps = 66/913 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR FL FF+ GH S L+P +D +L+ NSGM P K F+G++ P + +TT Sbjct: 13 VNEIREKFLSFFEGKGHLRAHSFPLVPQDDDSLLLINSGMAPLKPFFSGEKTPPAERMTT 72 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D+DNVG T RH TFFEMLGNFSFG YFK+ +I+ ++ +T + Sbjct: 73 SQKCIRTG----DIDNVGHTARHGTFFEMLGNFSFGDYFKKESIEWGYEFITDVLKIPSE 128 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L+ITVY +D+EA+K+W + G+ +++ R+ +DNFW + GPCGPCSEIF+D+GE Sbjct: 129 KLHITVYKDDDEAYKIWNEDVGIPGERLYRLGKDDNFWEIG-NGPCGPCSEIFYDRGEEY 187 Query: 184 PGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + +RY+E WN VF QF + + L +IDTGMGLERMA ++Q Sbjct: 188 GCGSKECSPGCDCDRYLEFWNHVFTQFNKTQDGKYEPLSHPNIDTGMGLERMACIMQGVE 247 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR----VIVDHLRSSSFLIADGILPANEGR 297 + +DID + E + + VI DHLRS++F+++DGILP+NEGR Sbjct: 248 SIFDIDTISFIKGFIEGKAMDAKVRLSSEDFNTGLNVITDHLRSATFMLSDGILPSNEGR 307 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RR++ +A LG ++ + AYPEL+ K I ++ E + Sbjct: 308 GYVLRRLLRRSIIHANKLGLDSDALVETAGKVIETSEGAYPELVAQKEHIFTEIKDECAQ 367 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTLD G +L+G + L ++ +IL+G+ AFKLYDT G P+++ +IL +D Sbjct: 368 FKKTLDSGESILNGYIDALKEEGSDILDGERAFKLYDTFGFPIELTAEIL-EGFSMKVDF 426 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + +E Q+ AR GSG L E +F GY+ Sbjct: 427 EGFKKHMEYQKELARKGRKNEGSGF---DMVELGESIEPCEFTGYES------------- 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++ V +V EA S V+ D+TPFY GGQ DTG + Sbjct: 471 -------------AAEVAKVV----FCTEADSEGVFYVILDRTPFYPRGGGQEPDTGKLV 513 Query: 536 GDGIRLQITDVQKKAEGIFV------HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + DV KK + I + + + T+D +NR NH+A Sbjct: 514 ISGNEFCVLDVSKKKDVIVHAVKFAGKEGKGSKISINKGDEVSATVDLKNRNAAMANHTA 573 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL ++ ++Q GS ++ DGLRFD+ + KP++ EL+ IE VND IA LPV Sbjct: 574 THLMHAALRELISKDITQAGSKVSCDGLRFDINYKKPLSYEELRDIEVWVNDRIASWLPV 633 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 RIM +++AI SGA L KY D VRVVS+E SS LCGG HV +TG I Sbjct: 634 TKRIMKKDEAIKSGAIGLFSDKYKDDVRVVSIE-----DASSELCGGLHVDNTGYIGSFK 688 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV ES++ +G RRIEAITG+ A ++L+ D + K L S K GN+ +V++++ E + Sbjct: 689 IVKESAVSSGTRRIEAITGRAASNYLLQLDAEKKKLESLTKTQDGNIYDKVQKLYSEIKD 748 Query: 770 LQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 L+ +K K +D+S + V F S I+ +++ ++K + +L ++ ++ ++ Sbjct: 749 LKADLSKLKKGRASDDISGSIEIKDVEGVKFGSAILGDMEIPDMKDLATSLTQRDKNLVL 808 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L + +K ++++ ED +D+ ++A DL + A + G GGG+P MAQ+GG + Sbjct: 809 LLAS--QGEKFTMVMACGEDAVDKGYSAGDLIKQVAPIC-GAKGGGKPKMAQAGGGDEKL 865 Query: 885 ADQAIAGVASFLK 897 D V S LK Sbjct: 866 FDDVCKAVLSALK 878 >gi|55820540|ref|YP_138982.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55822431|ref|YP_140872.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] gi|81559736|sp|Q5M126|SYA_STRT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|81560908|sp|Q5M5L5|SYA_STRT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|55736525|gb|AAV60167.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55738416|gb|AAV62057.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] Length = 872 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 322/916 (35%), Positives = 494/916 (53%), Gaps = 68/916 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FDL + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + ++ +VI DH+RS +F I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L++L K + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F+ Y+ Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + IV + SGQ +VF+QTPFYAE G Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + ++A H + G L + L ID+ R ++ Sbjct: 505 GQVADHGTISDAAGTTVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHSRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G+H Q GS + LRFD TH + +T EL++IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + PV T + + A + GA AL G KY RVRVVS+ G +S LCGGTHV++T E Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + I+ E I +G RRI A+T + A +++ LKS+A+ LK Q V +V + Sbjct: 680 IGMFKIIKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ LQ +A K + + V +++ + D+ L++ D ++ Sbjct: 740 QEQLHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L +EK ++ +E+ +A +L ++ A ++ G GGG+P MA +G Sbjct: 800 ADYSDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVAS 894 G + N ++ VA Sbjct: 855 GSDANSIQDLLSAVAE 870 >gi|315221813|ref|ZP_07863725.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211] gi|315189046|gb|EFU22749.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211] Length = 872 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D +++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWIS-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF E LP +IDTG Sbjct: 173 FDRGEAFDPEHQGLRLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKNYNPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG +P + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINDPFLYKLVPTVGKIMESYYPEVLEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G ++ L +++G FKLYDT+G P+++ Q+I Sbjct: 353 EKIIKSEEESFARTLHSGQHFAQSIVEELKAKGQSVISGTDVFKLYDTYGFPVELTQEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFETAMKEQQERARASVVKGGSMGMQN--ETLQNITAESHF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +S+ + AIV E VEE +G K +VF +TPFYAE G Sbjct: 462 ----------------NYEKEALSAKLVAIVAADEEVEEVSTG-KAYLVFSETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + +KA H + L L ID+ R ++ Sbjct: 505 GQVADHGHIFDSEGQLIAQVVDVQKAPNGQPLHTVEVVAPLTLNQEYKLEIDHNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG H +Q GS + LRFD TH + +T+ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQEVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + + T + + A GA AL G KY VRVV++ G +S LCGGTH+ +T E Sbjct: 625 EAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHMKNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+T + A +++ LK++A+ LKV Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEDALKAIATTLKVPQMKEVSRKVEAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + + H++ +F++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAASGEIFKNVHEVNGCSFIASQVSVSDAGALRTFADTWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAISEKVNVLVASKTKD----IHAGNLIKELAPIVN-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N + +A V L Sbjct: 855 GSNQAAIQELLAAVPEKL 872 >gi|227877600|ref|ZP_03995654.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|256849054|ref|ZP_05554487.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] gi|262047536|ref|ZP_06020491.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] gi|227862794|gb|EEJ70259.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|256713830|gb|EEU28818.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] gi|260572112|gb|EEX28677.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] Length = 879 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 321/919 (34%), Positives = 487/919 (52%), Gaps = 62/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I +E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ KD+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ + Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDRKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL +D + R L Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV +T +I Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I SES++ AG+RRIEA+T ++A +L + + L + +K N+V +++ + Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q ++N + D+ ++ +L+ + D + Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L + K ++ + + L A +L +++A + GGGG GGRP+MAQ+GG Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFLKK 898 N + AI V + K Sbjct: 860 KNPAGLNDAIKAVIDEISK 878 >gi|225011405|ref|ZP_03701843.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A] gi|225003908|gb|EEG41880.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A] Length = 870 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 484/918 (52%), Gaps = 73/918 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R FL+FF+ H+++PS+ ++ NDPTLMFTN+GM PFK F G P + Sbjct: 1 MKSF-EVRQQFLDFFESKKHKVVPSAPMVIKNDPTLMFTNAGMNPFKEYFLGNAVPSSKR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFK+ AI+ AW+LLT+ + + Sbjct: 60 VTDTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTEVYKI 119 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D +LY+T+++ D EAF WK I L ++I+ DNFW M + GPCGPC Sbjct: 120 DPNKLYVTIFEGAPEEGIEKDNEAFDFWKAI--LPEERILLGNKQDNFWEMGDQGPCGPC 177 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IE+WNLVF++F ++ LP+ IDTGM Sbjct: 178 SEIHVDIRSEEEKAKVSGAELVNQDHPQVIEVWNLVFIEFNRKANGSLEKLPEKHIDTGM 237 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ VLQ T+NYD D+F LI+ E +T Y + + RVI DH+R+ F I Sbjct: 238 GFERLCMVLQNTTSNYDTDVFTPLIREIETLTKSTYGEKQDTDRAIRVIADHIRTVYFAI 297 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG+A+PELI+ + Sbjct: 298 ADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIHLLVNTLSQQMGTAFPELIREQQ 357 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 L +R E+ F KTLD+GLVLL+ ++++ +I +G F+LYDT G P D+ I Sbjct: 358 LAFNVIREEENSFLKTLDQGLVLLESLITNSKSKKI-DGSKVFELYDTFGFPFDLTALIA 416 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G + +D F +A+E + + + W L+E +F+GYD L Sbjct: 417 GEKGFS-VDEEGFQKAMEV-----QKKRSRAAAASKAGDWVILQEDNVE-EFVGYDHLSV 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + RK+ A G ++VF+ TPFY E G Sbjct: 470 KVKITRYRKMT---------------------------TAKEGDFYQLVFNLTPFYPEGG 502 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + KK + VH + E + +D + R++ S Sbjct: 503 GQVGDKGYLEASNGDIFYVLDTKKENNLIVHQTKSI--PSKLESTFTAVVDPKQRQRSSS 560 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHL+H AL ++LG+HV Q GS + RFD +H +T+ ELK++E VN I + Sbjct: 561 NHTATHLMHQALRSVLGNHVEQKGSMVHSGMFRFDFSHFAKVTAEELKAVEQFVNARIQE 620 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +P+ R AI GA AL G KY D VR + S LCGGTHV++T Sbjct: 621 GIPLEEGRNTPYNSAIKEGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVANTAV 674 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SES++ +GIRRIEAITG A+ + Q L+++ LK +Q + ++ + Sbjct: 675 IWHFKITSESAVASGIRRIEAITGDAAKKYFEEQTSLLENVNELLKQAQDPL-KAIQSLQ 733 Query: 765 EEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E L+ +K K Q+ +DL I + F + + ++D + +K + + + Sbjct: 734 SENTALKKELSVLSKLKTQILKDDLLQKIKTIDGIQFAASEV-DIDPQGMKDLSFEIGSQ 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + + +I+++G K K + V++ L+ +A R K + GGG GG+P A + Sbjct: 793 LDN-VILVLGSVKSGKPLLSCYVSKSLVADKGKDASAFIRDLGKFIQGGG-GGQPFYATA 850 Query: 878 GGPNGNKADQAIAGVASF 895 GG N ++A+ Sbjct: 851 GGKNNEGMNEALDAAQGI 868 >gi|217077683|ref|YP_002335401.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B] gi|217037538|gb|ACJ76060.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B] Length = 859 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 352/906 (38%), Positives = 518/906 (57%), Gaps = 57/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FLEFF+K GH++LPS+SLIP DP L+FT +GMVPFK IF G+ PVY + Sbjct: 1 MRSDEIRRLFLEFFEKKGHKILPSASLIPE-DPQLLFTIAGMVPFKPIFWGKVDPVYTRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ +T+ + Sbjct: 60 ATCQKCVRT----TDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFVTQVLKIP 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + RL+I+VY +D EA+++W+K G+ + KI+++ DNFW TGPCGP +EIF+D Sbjct: 116 EERLWISVYKDDNEAYEIWRK-IGVPSSKILKLGKEDNFWGPAGPTGPCGPDTEIFYDTQ 174 Query: 181 ECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 + G P + R++EIWNLVF +F Q L + +IDTG GLER+A ++ Sbjct: 175 RDVPTSDGKEPTPANTEGRFVEIWNLVFTEFYQDENGNLLPLKRKNIDTGAGLERVAAMM 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q NN+D DLF +I+ + ++Y+ + V+ RVI DH+R+ FLI+DG+ P+NE Sbjct: 235 QGVYNNFDTDLFAPIIEGICNILNVEYKKDEKIDVSIRVIADHIRALVFLISDGVFPSNE 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA + +LLG P + L+ + +MG+ YPE+++ K +E + E+ Sbjct: 295 GRGYVLRRILRRAARHGKLLGANAPFLHKLVDFVVNKMGNVYPEIVEKKEFTKEIILGEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +RF + L++GL L++ V+ + ++G++AFKLYDT+G PLDI++D+ G +D Sbjct: 355 KRFLQNLNKGLELVEKVVRE--NNGKISGEMAFKLYDTYGFPLDILRDLAEENGY-VLDE 411 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ +E+QR A + G T + LK K ++F+GY+ Sbjct: 412 QGFNEYMEKQRLLA-KSAAGDVEFTKRTGYEDLKLK---SEFVGYEKYEEY--------- 458 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V AI + E V EA E+V ++TPFYAE GGQ+ DTG Sbjct: 459 --------------SKVLAI-KVSEFVNEAQDAD-CEIVLERTPFYAEKGGQVSDTGIIK 502 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+ + V EGI VH +G L + ID + R+ + NH+ATHLLH Sbjct: 503 GENGEFLVEYVYSPTEGIIVHRG-KLKGRLSVGEKVYAKIDIEKRKATARNHTATHLLHA 561 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + + LRFD TH ++ E++ +E VN++I + + V+ + Sbjct: 562 ALRKVLGTHVRQAGSLVESEKLRFDFTHFNALSVDEIEQVEKMVNNVILEAIDVIVEEKD 621 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A+ GA AL KY D+VRVV V G S LCGGTHV +TGEI L IVSE S Sbjct: 622 YDEAVKEGAMALFEEKYGDKVRVVKV-----GNFSEELCGGTHVKNTGEIGLFKIVSEGS 676 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRR+EAITG + +L + + L+V+ V R+E + EE +KL Sbjct: 677 VSAGIRRVEAITGLNSLMYLQRLENNWLKVRKVLEVNDEEVFRRIENMKEEIKKLNSEIK 736 Query: 776 KRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ D + I +V ++ ++ L+ + D L K +++L Sbjct: 737 SLKQKMVDIDSIYKNKKVINNVEYIVEKFEGLEVDVLRDLADRLVDK-GVDLVVLFDKVG 795 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 EK ++ + L +A ++A+ +KVLGGGG GGRP AQ+GG + K +AI + Sbjct: 796 EKVILIVKKKKSNQL--LHAGNIAKELSKVLGGGG-GGRPDFAQAGGKDFGKVQEAIKKL 852 Query: 893 ASFLKK 898 L++ Sbjct: 853 EEILRE 858 >gi|86142096|ref|ZP_01060620.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217] gi|85831659|gb|EAQ50115.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217] Length = 849 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 322/897 (35%), Positives = 477/897 (53%), Gaps = 72/897 (8%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 + S+ ++ NDPTLMFTN+GM FK F G P VT QKC+R GKHNDL+ VG+ Sbjct: 1 MASAPMVIKNDPTLMFTNAGMNQFKEFFLGNGTPKDTRVTDTQKCLRVSGKHNDLEEVGK 60 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE-------- 134 HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ +LY+T+++ D+ Sbjct: 61 DTYHHTMFEMLGNWSFGDYFKQDAIDWAWELLTEVYKIDKNKLYVTIFEGDDSEGLERDA 120 Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI----PGGLPGS 190 EA+ +WKK ++ D+I+ DNFW M + GPCGPCSEI D G Sbjct: 121 EAYDMWKK--HVAEDRILNGNKKDNFWEMGDQGPCGPCSEIHVDLRSEEEKAKTPGAELV 178 Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250 + + + +EIWNLVF+QF ++ LP IDTGMG ER+ VLQ+KT+NYD D+F Sbjct: 179 NADHPQVVEIWNLVFIQFNRKADGSLENLPARHIDTGMGFERLCMVLQDKTSNYDTDVFT 238 Query: 251 HLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308 LI+ E + KY + + RVI DH+R+ +F IADG LP+N G GYV+RRI+RRA Sbjct: 239 PLIREIETIAHSKYGQSEETDIAIRVIADHVRAVAFSIADGQLPSNTGAGYVIRRILRRA 298 Query: 309 MCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367 + Y L EP + L+ L EM A+PEL + + LI ++ E++ F +TLD+GLV Sbjct: 299 VRYGFTFLNTKEPFIYKLVSVLVDEMSKAFPELKKQQNLIFNVIKEEEQSFLRTLDQGLV 358 Query: 368 LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427 LLD +++ E+ +G AF+LYDT+G P+D+ IL +G +D +F L++Q+ Sbjct: 359 LLDSIIAETKGKEV-SGAKAFELYDTYGFPIDLTALILSEKGYT-LDEKAFQTELQKQKD 416 Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487 R+RA G E +++ E+ +F+GYD L+ + RK Sbjct: 417 RSRAA------GKIEAGDWTIVEEDSEEEFVGYDTLQTPVRITRYRK------------- 457 Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547 + G + ++VF+ TPFYAE GGQ+GD G + Sbjct: 458 --------------INTKKEGDQYQLVFNLTPFYAEGGGQVGDKGYLEAANGDVVYITDT 503 Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607 KK + +H + + + +D + R + NHSATHLLH AL +LG+HV Q Sbjct: 504 KKENNLIIHLS--KNLPKNLNETFTAVVDAKQRHRTQANHSATHLLHQALRAVLGTHVEQ 561 Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAA 666 GS + LRFD +H +T+ ELK IE VN I + LP+ R + + AIA GA A Sbjct: 562 KGSMVHSGYLRFDFSHFSKVTAEELKDIEQFVNARIQEQLPLEEQRAIPYDQAIAEGAIA 621 Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 L G KY D VR + S LCGGTH +T +I I SES++ +GIRRIEAI Sbjct: 622 LFGEKYGDAVRTIRFG------KSMELCGGTHAENTADIWYFKIKSESAVASGIRRIEAI 675 Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784 TG + QDE+L+++ S L + +E + E +L+ + Sbjct: 676 TGDAVMQYFEEQDEQLEAVRSLLN-NAKEPAKSIESLQSENNELKKQLEVLLAEKAKNVK 734 Query: 785 ---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 ++ V F++ + ++D+ +K + L ++ + +L+ + KA + Sbjct: 735 GELKTEIQEVNGVQFLAKEV-DLDANGIKDLAFQLGGEVDD-LFLLLASRQGGKALLSCY 792 Query: 842 VTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + ++L NA + R K + GGG GG+P A +GG N + QA+ V ++L Sbjct: 793 IDKELAKAKDLNAGTIVRELGKFIQGGG-GGQPFFATAGGKNPDGIAQALNEVKTYL 848 >gi|159037443|ref|YP_001536696.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205] gi|205830198|sp|A8LXY8|SYA_SALAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157916278|gb|ABV97705.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205] Length = 892 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 324/928 (34%), Positives = 495/928 (53%), Gaps = 72/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L F+ NGH ++PS+ L +DP L+F +GM+ F F GQ+ Y+ Sbjct: 1 MKTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAWDL TK Sbjct: 61 VSVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWDLATKSVDAG 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD R++ TVY +D+EA+++W+ G+ AD+I+R DNFWSM GPCGPCSE+F Sbjct: 117 GFGLDPERIWPTVYLDDDEAYEVWRS-VGVPADRIVRRGKADNFWSMGIPGPCGPCSELF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + + +RY+E WNLVFMQFE+ + P +IDTGMGL Sbjct: 176 YDRGPEY-GLEGGPAVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA++LQ N Y+ID + ++ + ++TG +Y + V RV+ DH+R Sbjct: 235 ERMASILQGVDNLYEIDEVRPILDRAAELTGKRYGAHSGHVASESHPDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 ++ LI DG+ P+NEGRGYVLRRIMRRA+ RLLG+ E M LLP M +YPEL Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSPSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398 I + +E++ F TL G +LD ++ ++G AF+L+DT+G P+ Sbjct: 355 AADFGRIADYAYAEEDAFLSTLRAGTTILDTAIAESRTAGRRAISGAQAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457 D+ +I +G+ +D F + + +QR+RA+A + +G + + ++ ++ G F Sbjct: 415 DLTLEIANEQGM-QVDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY + S V+A++ + AV G VE+V D Sbjct: 474 TGYHEV-----------------------SRESTVRAVLGEAGPRAAAVEGDTVELVLDT 510 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R + ID Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRAGETGFAEIDA 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L+ +E Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ + +L V + + +A GA AL G KY ++VRVV V G ++ LCGGT Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+ +G++ L+ I+SESSI +G+RR+EA+ G A + L + + LA +V V Sbjct: 686 HVARSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHII-SEVDSKELKS 811 RVE+ + R + K + QL + + ++ V ++ ++++ Sbjct: 746 DRVEQTVSQLRDAEKELEKLRAQLVLGGAAALAAQATEVRGVAYVGTEAPEGASGNDVRT 805 Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +I ++ V KAS+++ V + R +A DL + + G G Sbjct: 806 LAQEIRGRIDPARPAVVAVAARSNGKASLVVAVNQAARSRGLSAADLVKAAFA----GRG 861 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG P +AQ GG +A + V + + Sbjct: 862 GGSPELAQGGGLPAAEAPGLLRTVENAI 889 >gi|149011620|ref|ZP_01832816.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] gi|147764051|gb|EDK70983.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] Length = 872 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 325/918 (35%), Positives = 493/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ + +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEVE-VDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINELFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +T FYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + ++ T +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L V T + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V + E + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKAEGL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ +A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+DL +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVAGKL 872 >gi|302834443|ref|XP_002948784.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f. nagariensis] gi|300265975|gb|EFJ50164.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f. nagariensis] Length = 980 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 322/939 (34%), Positives = 478/939 (50%), Gaps = 86/939 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL FF+ GH LPSSSL+P DPT++ T +GM+ FK +F GQ Sbjct: 81 MSGAEIREAFLSFFESKGHTRLPSSSLVPE-DPTVLLTIAGMLQFKPVFLGQAPRKVPTA 139 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T F L Sbjct: 140 TTTQKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIRWAWELSTGVFGLP 195 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R++++V++ED EA +W+ + G+ ++I R+ DNFWS TGPCGPCSE+++D Sbjct: 196 PERVWVSVFEEDGEAEAIWRDVVGVPPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHP 255 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G S E+ R+IE +NLVFMQ ++ L +IDTGMGLERMA +LQ Sbjct: 256 E-RGTEGASLEDDTRFIEFYNLVFMQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVP 314 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNY+ DL ++Q + ++ + Y + +VI DH R+ +++++DG+ P+N GRG Sbjct: 315 NNYETDLIFPIVQKAAEIAAVDYHSASPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRG 374 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RR + RLLG E + G P + + I + L E+ F Sbjct: 375 YVLRRLLRRVVMKGRLLGIREVFTPAVAAVAVGLSGPCDPAVQKNAQRIYDELAREEGLF 434 Query: 359 GKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TL+RG LD +LS ++ G AF LYDT G PL++ Q++ ARG +D+ Sbjct: 435 VATLERGQKQLDELLSAATASTGSRVIGGADAFMLYDTFGFPLELTQELAEARG-VEVDV 493 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--------------------GAT 455 F+ +E QR R++ + + + + G T Sbjct: 494 AGFDGEMEAQRQRSKESRETVDLTAQAGLAQLAAQTHSRSWLPPGVRIPIRTQRMRVGPT 553 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 F GY RG V ++++G+ VE +G + EV+ Sbjct: 554 SFTGYSATRGC-----------------------GRVVGLMREGKPVERVHAGDRCEVLL 590 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK---------KAEGIFVHHAIVERGILR 566 D TPFYAE+GGQ+GD G + + + +FVH V G L Sbjct: 591 DVTPFYAESGGQVGDMGRLVLPAAAGEAEVAAEVAVRDCQKAAGGSVFVHSCEVVAGELG 650 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D RR++ +H+ATHLL AL +LG Q GS + LRFD ++ Sbjct: 651 VGDAVNALVDDDLRRRVRAHHTATHLLQSALKIVLGPDTCQQGSLVNFQRLRFDFNLARA 710 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 ++ +EL +E VN +AQ P+ TR+M ++A A+GA A+ G KY+D VRVV V Sbjct: 711 MSPSELTEVERLVNCWVAQAAPLETRVMGLQEAKAAGATAMFGEKYDDVVRVVDVPG--- 767 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S LCGGTHV +T EI I+SES I +GIRR+EA+ G A +L D ++ LA Sbjct: 768 --ISMELCGGTHVGNTAEIGAFKILSESGIASGIRRVEAVAGTAAVEYLHTVDGLVRGLA 825 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED------LSCHKIADVNFMSHI 800 LKV V RV + E R + + ++ K QL V + + + Sbjct: 826 GQLKVKLEEVPSRVAALQSELRSTEKLLSELKAQLAVAQSQSLVGEAVTAPGGLKVLVAE 885 Query: 801 ISE-VDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLAR 857 + V++K ++ + ++L + + K + + ++ + A + Sbjct: 886 LPGEVEAKAMQGAL------GDPAAVLLASRAVDGSKVNFVAALSPGAVKGGLQAGKVVG 939 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 AKV GGGG GG+P +AQ+GG + +K ++A+ L Sbjct: 940 AVAKVCGGGG-GGKPALAQAGGRDASKTEEALEVGRKLL 977 >gi|183982183|ref|YP_001850474.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M] gi|205830153|sp|B2HNC1|SYA_MYCMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|183175509|gb|ACC40619.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M] Length = 901 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 314/932 (33%), Positives = 466/932 (50%), Gaps = 72/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L+ TVY +D+EA LW++++GL AD+I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G E RY+EIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPDYGPEGGPVVNED-RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL + +I Y + V +R+I DH R+++ LIA Sbjct: 235 ERVALILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIA 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LL ++ L+ + MG +YPEL I Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDFDRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L D V + +++G AF L+DT+G P+++ ++ Sbjct: 355 NRIAVAEETAFNRTLASGSRLFDEVAGTTRSSGVSVVSGSDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D F + + +QR RA+A + + + G T+F G+D L Sbjct: 415 SEAGLT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-----QKVEVVFDQTPF 520 + + I G+ V G +VE+V D+TP Sbjct: 474 -----------------------EARILGIFVDGKRVPVVAHGQAVDADRVELVLDRTPL 510 Query: 521 YAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 YAE+GGQ+ D G G R +TDVQK A+ +++H VE G +V D Sbjct: 511 YAESGGQIADVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAAD 570 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R+ + HS TH++H AL +LG + Q GS P LRFD P+T + IE Sbjct: 571 AGWRKGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIE 630 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N + + V T E A A GA AL G Y D VRVV + GG S LCGG Sbjct: 631 EVTNQAVQADFAVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSIELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+++ +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV V Sbjct: 687 THVATSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHII-SEVDSKELK 810 RV + E + + + +L +I +V ++ + SE+ +L+ Sbjct: 747 PARVASLVERLKAAEKELERARLASVRAAAVNAAAGAERIGNVWLVAQRMSSEMTPADLR 806 Query: 811 SVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 +++ ++ K+ S ++ L+ + ++ A +L + A + Sbjct: 807 TLVGDIRGKLGSDPAVVALIAAPAGGESSTVPYVVAANRAAQGLGLGANELIKHLATAV- 865 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+ +AQ G D A+ + + + Sbjct: 866 DGRGGGKADLAQGSGKKPAGIDAALEALRAEI 897 >gi|167753580|ref|ZP_02425707.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216] gi|167658205|gb|EDS02335.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216] Length = 847 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 317/893 (35%), Positives = 475/893 (53%), Gaps = 75/893 (8%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++ NDPTLMFTN+GM FK+IF G Y QKC+R GKHNDL+ VG HH Sbjct: 1 MVVKNDPTLMFTNAGMNQFKDIFLGNIPRPYPRAADTQKCLRVSGKHNDLEEVGHDTYHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKL 139 T FEMLGN+SFG YFK+ AI AW+LLT + LD+ R+Y TV++ D+EA+ + Sbjct: 61 TMFEMLGNWSFGDYFKKEAIGWAWELLTGVYGLDKSRMYATVFEGSPEDGVPFDQEAYDI 120 Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP----GGLPGSSEEGE 195 W + L AD IIR +DNFW M + GPCGPCSEI +D + G ++ Sbjct: 121 WLQY--LPADHIIRGNKHDNFWEMGDVGPCGPCSEIHYDLRDESEIAAVPGREMVNQGSP 178 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 IEIWNLVFMQF ++ L IDTGMG ER+ +LQ K +NYD D+F+ IQ Sbjct: 179 LVIEIWNLVFMQFNRKANGSLEPLAANCIDTGMGFERLCMILQGKKSNYDTDVFQPTIQR 238 Query: 256 SEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313 ++G Y + V RV+ DHLR+ SF IADG LP+N GYV+RRI+RRA+ Y Sbjct: 239 IAAMSGKTYGADEKCDVAMRVVADHLRAISFSIADGQLPSNVKAGYVIRRILRRAVRYGY 298 Query: 314 L-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372 LG+ EP + L+ L +MG +PEL + LIE+ + E+ F +TL G+ LLDGV Sbjct: 299 TYLGFNEPFICRLVAGLVDQMGGQFPELKAQQTLIEKVIEEEESSFLRTLATGINLLDGV 358 Query: 373 LSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430 ++ + K E ++G AF LYDT+G P+D+ + I +G +D+ +F + L+ Q+ R+R Sbjct: 359 MAEVRKSGGERISGKDAFLLYDTYGFPIDLTELIAREQG-IEVDLEAFEKELQAQKERSR 417 Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490 + + ++FIGYD L + R+V + Sbjct: 418 NA------AAVDTDDWKELIHIKQSEFIGYDTLSAEVKIARYRRVSSKGRVS-------- 463 Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550 ++VFD+TPFY +GGQ+GD G R+ + +K+ Sbjct: 464 --------------------YQLVFDRTPFYGNSGGQIGDIGYIETANERIPVVATEKEN 503 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610 I + T M++V D + R+ + NH+ATHL+H AL +LG+HV Q GS Sbjct: 504 GLIIHIVTQLPENPEATFMAVV---DPEKRQAAANNHTATHLMHEALRKVLGTHVEQKGS 560 Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLG 669 +TP+ LRFD +H + +T EL+ +E VN I N P R +E+A A+GA L G Sbjct: 561 LVTPEYLRFDFSHFQKVTHEELRRVEQLVNRAIRANYPLEEKRDATKEEAAAAGAMMLFG 620 Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 KY DRVR+V S LCGGTHVS+TG I I++ES+I AG+RRIEA TG Sbjct: 621 EKYGDRVRMVRFG------TSVELCGGTHVSATGNIGFFKILNESAISAGVRRIEATTGA 674 Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789 +A + ++ ++++A +L ++ +++I E L+ + + E + Sbjct: 675 KAEEVIYAAEDTMRNVADYLNNP--QILQSIKKIMESNEALKHEMEAIRREQVAEWAAKI 732 Query: 790 -----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844 + + M+ +K + A++ + ++ I++++G + K ++ + + + Sbjct: 733 VDSTPERGGMRLMATQTDRR-PDFIKDLAFAVRSRSKN-IVLVIGSINDGKPTLTVALGD 790 Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 D++ NA + R +AK + GG GGG+P +A +GG N + AI + Sbjct: 791 DIVAQGVNAGVVVREAAKAINGG-GGGQPFLATAGGKNPDGIQAAIDKAVELI 842 >gi|302541105|ref|ZP_07293447.1| alanine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653] gi|302458723|gb|EFL21816.1| alanine-tRNA ligase [Streptomyces himastatinicus ATCC 53653] Length = 828 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 306/863 (35%), Positives = 471/863 (54%), Gaps = 66/863 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ +P Y+ Sbjct: 1 MMESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPFFLGEVQPPYKR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117 +VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 AVSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTGSVAD 115 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 + LD RL+ITVY++D+EA ++W+ + G+ A++I R+ N+WSM GPCGPCSEI Sbjct: 116 GGYGLDPERLWITVYEQDDEAERIWRDVVGVPAERIQRLGMGPNYWSMGVPGPCGPCSEI 175 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMG 229 +D+G G G + ERY+EIWNLVFMQ+E+ + + P +IDTG+G Sbjct: 176 NYDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGPGEGKENFPILGELPSKNIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIA 287 LER+A +LQ N Y+ D + ++ + ++TG+ Y ++ + RV+ DH+R+S LI Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVAYGSSHDSDVSLRVVADHMRTSVMLIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGYVLRRIMRRA+ R+LG EP++ L+ + MG YPEL+ + I Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRILGAAEPVVGELVDVVLKTMGQQYPELLTDRKRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E +E+ F KTL G +LD + + +L GD AF L+DT G P+D+ ++ Sbjct: 355 ETVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLPGDKAFLLHDTWGFPIDLTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464 +GL+ +D F + + EQR RA+A + +G + + + + G+T+F GY Sbjct: 415 AEQGLS-VDEDGFRRLMREQRERAKADAKAKKTGHADLSAYREVADTSGSTEFTGYSDTS 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 G S V ++ G A G +VEVV D+TPFYAE Sbjct: 474 G-----------------------ESTVVGLLVDGVSSPAASEGDEVEVVLDRTPFYAEG 510 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL DTG + G +++ DVQ+ G+ VH +V+ G + ID + RR + Sbjct: 511 GGQLADTGKIKLASGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGSGAYAEIDVRRRRAI 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + HSATHL H AL LG +Q GS +P RFD + L +E +N+++ Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPSAVPGGVLTDVEQKINEVL 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++ L V +M+ +DA GA A G KY DRVRVV++ G S LCGGTHV +T Sbjct: 631 SRELDVTAEVMSMDDAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTA 685 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ L+ ++ ESSI +G+RR+EA+ G A + L + + L +K + ++ + Sbjct: 686 QLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVKGRPEELPEKISGM 745 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQ 817 + R + + + + ++ + DV ++ + + +L+ ++ ++ Sbjct: 746 LAKLRDAEKEIERFRAEKVLQAAAGLAEGAKDVRGVALASGRVPDGTTADDLRKLVLDVR 805 Query: 818 KKIQ--------SGIIMLVGISK 832 ++ +I L ++ Sbjct: 806 GRLDQKSGAVDRPAVIALFTVAN 828 >gi|225870098|ref|YP_002746045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] gi|225699502|emb|CAW93052.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] Length = 872 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 326/918 (35%), Positives = 499/918 (54%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I + +NFW + GP GP +EIF Sbjct: 117 WFDFPKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L+G FKLYDT+G P+++ +++ Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLAQLKEKGQDRLDGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA ++ GS + +L ++F+ Y+ Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T V+S + I+ E E GQ +VFDQTPFYAE G Sbjct: 465 -------------------TETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L ID++ R + Sbjct: 505 GQVADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEVLASLALDTVYTLAIDHKRRYAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHKVIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L + T + E A A GA AL G KY VRVV + G +S LCGGTH+S++ E Sbjct: 625 KALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L I+ E I +G RRI A+TGQ+A Q++ LK +A LKV Q + +V + Sbjct: 680 IGLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDILKEIAHTLKVPQIEQLPSKVVSL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R LQ A+ K + + + +++ +S D+ L++ D ++ Sbjct: 740 SEQLRDLQKEMAELKEKAAAAQAGDVFKKVQEANGLRYIASEVSVSDAGVLRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + S +++L E K +VL+ ++D R +A +L + A ++ G GGG+P MA +G Sbjct: 800 RDYSDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A V L Sbjct: 855 GSDASKLSELLAAVPEHL 872 >gi|15675313|ref|NP_269487.1| alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71910945|ref|YP_282495.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] gi|20532260|sp|Q99Z57|SYA_STRP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13622492|gb|AAK34208.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71853727|gb|AAZ51750.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] Length = 872 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAEIV 872 >gi|196231110|ref|ZP_03129970.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428] gi|196224940|gb|EDY19450.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428] Length = 925 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 317/969 (32%), Positives = 465/969 (47%), Gaps = 119/969 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 + IR +FL+FF++ H ++PSSSL+P + P L+FTN+GM F IF G+ K Sbjct: 1 MTSAQIRQSFLDFFREKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGERKADVSSW 59 Query: 59 ---------------------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97 QKC+RAGGKHNDLD+VG HHTFFEMLGN+S Sbjct: 60 ADAVNWFGEKNRDGTLNKTSDTRAADTQKCIRAGGKHNDLDDVGLDTYHHTFFEMLGNWS 119 Query: 98 FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWKKI---S 144 FG YFK+ AI+ AW+L+ + +RLY T+Y D DEEA+ LW + Sbjct: 120 FGDYFKKEAIEWAWELVVGRWKFPPQRLYATIYNPDKSIGDPADRDEEAWNLWAEKFRAV 179 Query: 145 GL-SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203 GL A I+ DNFW M ETGPCGPCSE+ D ++ IEIWNL Sbjct: 180 GLDPAVHIVNGNKKDNFWMMGETGPCGPCSELHVDLTPAGDTKGALVNKGTAECIEIWNL 239 Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE----------KTNNYDIDLFKHLI 253 VF+QF LP +DTGMG ER+++++Q K +NY+ D+F+ + Sbjct: 240 VFIQFNANPDGTFSPLPAKHVDTGMGFERVSSIIQGTKDFTDFANAKISNYETDIFRPIF 299 Query: 254 QASEQVTGMKY------------------EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 E+ G +Y + V RVI DH+R+ SF IADGI P N Sbjct: 300 DEIEKQCGKRYTSTLPQPNAQGQIIPESEQEKVDVAFRVIADHIRTLSFAIADGIQPGNT 359 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 R YVLRRI+RRA+ Y R LG+TEP L+ L MG +PE+ + +EE L+ E+ Sbjct: 360 DRNYVLRRILRRAVRYGRTLGFTEPFFYKLVGVLARTMGDVFPEIRAKQKHVEEVLKREE 419 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F +TLD+G+ L ++ K + L+G AFKLYDT+G PLD+ + + RGL +DI Sbjct: 420 ESFNRTLDKGIELFTSFVAS-EKQQQLSGTSAFKLYDTYGFPLDLTELMARERGLT-VDI 477 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +E+QR RAR + I S E T FIGYD ++E Sbjct: 478 AGFEVEMEKQRKRAREAQ------VRDVIELSEIETKTPTHFIGYDHNHTGADVQEV--- 528 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + +G+ V V+ + + YAE GGQ+GD+G Sbjct: 529 -------------------LSVKGKTV----------VIANNSVCYAEMGGQVGDSGEMT 559 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G G +K+ ++H G + + +D R + +H+ THLLH Sbjct: 560 GHGGNSWRIANTQKSGNTWLHFLEEADGP-AVGDHVTIQLDGARRGAIQRHHTVTHLLHW 618 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ +Q GS + PD L FD S +T +++ IE VN+ I +N V M Sbjct: 619 ALHEVVSKEATQKGSFVGPDKLTFDFN-SAALTPVQVRDIERLVNERIVENGSVSWIEMP 677 Query: 656 REDAIASG-AAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVS 712 + G G KY + VRVV + + +S LC GTH +TGEI L I + Sbjct: 678 YAEVRGRGDIMQFFGDKYGETVRVVQIGGQATKLDGYSMELCAGTHTRATGEIGLFRINA 737 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES+I AG+RRIEA G A ++L +LA+ + + R+E + + ++L+ Sbjct: 738 ESAIAAGVRRIEAAAGLNAYDLANADTQRLHALATKVGSPLPELEKRIEGLLAQQKELEK 797 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + I + + D L++V DAL+ G+ +L Sbjct: 798 ALKAAQQREAAGRAKDLLANAATINGTPAIIANLGAADGDTLQTVADALKSNGFKGVTVL 857 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + +++ V+ D + A + + A ++GG G GG+P A+ GG + +K ++ Sbjct: 858 GGTAN-GAVALVAAVSPDFTAKVQAGKIIQTIAPLVGGKG-GGKPEGARGGGKDPSKLEE 915 Query: 888 AIAGVASFL 896 A+A + L Sbjct: 916 ALAQAKALL 924 >gi|325956136|ref|YP_004286746.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC] gi|325332701|gb|ADZ06609.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC] gi|327182944|gb|AEA31391.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118] Length = 879 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 328/921 (35%), Positives = 500/921 (54%), Gaps = 66/921 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++FK+W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ +E Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q+ D G L ++ DVQ + H + + +L +D + R L Sbjct: 506 QVADHGNIYSQDGELVAKVIDVQHAPNDQNL-HFVDLILPVEKGKEYILKLDKERREGLR 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+K++E+ VN I Sbjct: 565 HSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T I E+ GA AL KY D+VRVV + G SS CGGTHV +T + Sbjct: 625 EAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQ 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I + I SES++ AG+RRIEA+T ++A +L + L + +K N++ +++ + Sbjct: 680 IGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDDIQEDVKATKPDNIIDKIDSL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + Q ++N + + D+ +S I + +L+ + D + Sbjct: 740 ESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMNDLRELADNWKS 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +S +++L + + KA+++I + + L A DL +++A + GGGG GGRP+MAQ+ Sbjct: 800 GNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIFGGGG-GGRPNMAQA 857 Query: 878 GGPNGNKADQAIAGVASFLKK 898 GG + AI V + K Sbjct: 858 GGKKPEGLNDAIKAVIDEISK 878 >gi|293381586|ref|ZP_06627573.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1] gi|290921856|gb|EFD98871.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1] Length = 879 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 321/919 (34%), Positives = 487/919 (52%), Gaps = 62/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I +E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ KD+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ + Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL +D + R L Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV +T +I Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I SES++ AG+RRIEA+T ++A +L + + L + +K N+V +++ + Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q ++N + D+ ++ +L+ + D + Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L + K ++ + + L A +L +++A + GGGG GGRP+MAQ+GG Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFLKK 898 N + AI V + K Sbjct: 860 KNPAGLNDAIKAVIDEISK 878 >gi|145594371|ref|YP_001158668.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440] gi|205830200|sp|A4X5Z0|SYA_SALTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145303708|gb|ABP54290.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440] Length = 892 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 323/928 (34%), Positives = 491/928 (52%), Gaps = 72/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L F+ NGH ++PS+ L +DP L+F +GM+ F F GQ+ Y+ Sbjct: 1 MKTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAW+L TK Sbjct: 61 VSVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWELSTKPVDAG 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD R++ TVY +D+EAF++W+ G+ AD+I+R DNFWSM GPCGPCSE+F Sbjct: 117 GLGLDPDRIWPTVYLDDDEAFQIWRS-VGVPADRIVRRGKADNFWSMGIPGPCGPCSELF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + +RY+E WNLVFMQFE+ + P +IDTGMGL Sbjct: 176 YDRGPEY-GREGGPEVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA++LQ N Y+ID + ++ + ++TG +Y + V RV+ DH+R Sbjct: 235 ERMASILQGVDNLYEIDEVRPILAKAAELTGKRYGAHSGQVASESHPDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 ++ LI DG++P+NEGRGYVLRRIMRRA+ RLLG+ E M LLP M ++YPEL Sbjct: 295 TALMLIGDGVIPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSASYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398 I + +E++ F TL G +LD ++ ++G AF+L+DT+G P+ Sbjct: 355 ATDFGRIADYAYAEEDAFLSTLRAGTTILDTAIAETRTAGRRAISGAKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457 D+ +I +GL +D F + + +QR+RA+A + +G + + ++ ++ G F Sbjct: 415 DLTLEIASEQGL-QVDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY + S V+A++ AV G+ VE+V D Sbjct: 474 TGYQEV-----------------------SRESTVRAVLGAASPHAAAVEGETVELVLDT 510 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R + ID Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRVGETGFAEIDT 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L+ +E Sbjct: 571 DRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ + +L V + + +A GA AL G KY ++VRVV V G ++ LCGGT Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV +G++ L+ I+SESSI +G+RR+EA+ G A + L + + LA +V V Sbjct: 686 HVGRSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKS 811 RVE+ + R + K + QL ++ V ++ ++++ Sbjct: 746 ERVEQTVTQLRDAEKELEKLRAQLVLGGAAALAAQASEVRGVAYVGTEAPEGAAGNDVRT 805 Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGG 868 + ++ +I ++ V KAS+++ V +A DL +++ G G Sbjct: 806 LAQEIRSRIDPARPAVVAVAARANGKASLVVAVNPAARSQGLSAADLVKVAFA----GRG 861 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG P +AQ GG +A + V + + Sbjct: 862 GGSPELAQGGGLPAAEAPGLLRTVENAI 889 >gi|315037651|ref|YP_004031219.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] gi|312275784|gb|ADQ58424.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] Length = 879 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 328/921 (35%), Positives = 501/921 (54%), Gaps = 66/921 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++FK+W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ +E Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q+ D G L ++ DVQ + H + + +L +D + R L Sbjct: 506 QVADHGNIYSQDGELVAKVIDVQHAPNDQNL-HFVDLILPVEKGKEYILKLDKERREGLR 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+K++E+ VN I Sbjct: 565 HSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V T I E+ GA AL KY D+VRVV + G SS CGGTHV +T + Sbjct: 625 EAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQ 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I + I SES++ AG+RRIEA+T ++A +L + L ++ +K N++ +++ + Sbjct: 680 IGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDNIQEDVKATKPDNIIDKIDSL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + Q ++N + + D+ +S I + +L+ + D + Sbjct: 740 ESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMNDLRELADNWKS 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +S +++L + + KA+++I + + L A DL +++A + GGGG GGRP+MAQ+ Sbjct: 800 GNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIFGGGG-GGRPNMAQA 857 Query: 878 GGPNGNKADQAIAGVASFLKK 898 GG + AI V + K Sbjct: 858 GGKKPEGLNDAIKAVIDEISK 878 >gi|300919279|ref|ZP_07135796.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1] gi|300413634|gb|EFJ96944.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQTDVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|299141813|ref|ZP_07034948.1| alanine--tRNA ligase [Prevotella oris C735] gi|298576664|gb|EFI48535.1| alanine--tRNA ligase [Prevotella oris C735] Length = 886 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 315/935 (33%), Positives = 483/935 (51%), Gaps = 89/935 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQA 60 + +R ++ +FF+ GH+++ S+ ++ +DPTLMFTN+GM +K+I G + P Sbjct: 1 MTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 61 RVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLHL 120 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY+TV++ D+EA W K + AD II +DNFW M +TGPCGPC Sbjct: 121 NPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 +EI D + + G +++ + IEIWN+VFMQ+ ++ LP IDTGM Sbjct: 179 TEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273 G ER+ +LQ+K +NYD D+F+ +I+ E ++G KY + R Sbjct: 239 GFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAMR 298 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332 V+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E + LLP L E Sbjct: 299 VVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVQE 358 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKL 390 MG AYPEL + LI ++ E++ F +TL++G+ LL+G + L L+G AF+L Sbjct: 359 MGQAYPELSAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTELDGTSAFRL 418 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + I G +D FN+ + +Q++RAR ++ W ++E Sbjct: 419 FDTYGFPLDLTELICREHGYT-VDEKGFNEEMAKQKARARNAAV-----VENGDWEVIRE 472 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G F+GYD + + RKV +K Sbjct: 473 --GEQVFVGYDYTEYTCHILRYRKVTQKKNTF---------------------------- 502 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + ++I D +++ V++ + Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDTKRENNQSIHI---VKQLPKDLQAE 559 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D + R + NH+ATHLL +AL +LG HV Q GS + P LRFD +H + +T Sbjct: 560 FMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTEE 619 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VN +I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 ELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP------ 673 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S CGG H STG I I+SESS+ AGIRRIEA+TGQ + + + L S Sbjct: 674 SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSMF 733 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV 804 + ++ +++ E+ +++ K + Q + V + ++ + Sbjct: 734 N-NSKDLKATLKKFIGEHDEMRKEIEKFQAQAVERTKEELLKRAQNVNGVQVIKAVLP-L 791 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862 + K + L++ I +++++G + K + ++ ++D++ NA + +AK+ Sbjct: 792 EPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIHEAAKL 851 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + GG GGG+PH AQ+GG N + A+ V Sbjct: 852 IQGG-GGGQPHYAQAGGKNLDGISAAVDKVIELAN 885 >gi|295692276|ref|YP_003600886.1| alanyl-tRNA synthetase [Lactobacillus crispatus ST1] gi|295030382|emb|CBL49861.1| Alanyl-tRNA synthetase [Lactobacillus crispatus ST1] Length = 879 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 322/919 (35%), Positives = 487/919 (52%), Gaps = 62/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T K G N ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ + Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL +D + R L Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV +T +I Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I SES++ AG+RRIEA+T ++A +L + + L + +K N+V +++ + Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q ++N + D+ ++ +L+ + D + Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L + K ++ + + L A +L +++A + GGGG GGRP+MAQ+GG Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFLKK 898 N + AI V + K Sbjct: 860 KNPAGLNDAIKAVIDEISK 878 >gi|323188423|gb|EFZ73709.1| alanyl-tRNA synthetase [Escherichia coli RN587/1] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 493/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F+ A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKS 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|254779785|ref|YP_003057891.1| alanyl-tRNA synthetase [Helicobacter pylori B38] gi|254001697|emb|CAX29926.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Helicobacter pylori B38] Length = 847 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 324/892 (36%), Positives = 485/892 (54%), Gaps = 57/892 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++ G + + ++ Y +F+GY+ Sbjct: 418 EQVKRSKTSWKGKQNNA---DFSAILNAYAPNEFVGYETTE------------------- 455 Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + V + + EA Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 456 ----CPAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLLKDNEEAA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + LRFD +H+K + + EL+ +ED VN I ++L M A Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNNEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKDK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RR Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 736 SMDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + A+ + Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839 >gi|28895717|ref|NP_802067.1| alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1] gi|73919472|sp|Q878X3|SYA_STRP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28810966|dbj|BAC63900.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1] Length = 872 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAEIV 872 >gi|62185445|ref|YP_220230.1| alanyl-tRNA synthetase [Chlamydophila abortus S26/3] gi|81312406|sp|Q5L512|SYA_CHLAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|62148512|emb|CAH64283.1| putative alanyl-tRNA synthetase [Chlamydophila abortus S26/3] Length = 875 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 324/897 (36%), Positives = 488/897 (54%), Gaps = 48/897 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H ++ SS + P NDP+++FTN+GM FK+IF +E Y Sbjct: 1 MLSNTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+Y TV+++D+EAF LW L +++I R+T DNFWSMAETGPCG CSE+ FD+GE Sbjct: 121 PDRIYATVHEKDDEAFALW--EQHLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGE 178 Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P EGER++E WNLVFM+F + + LP +DTG GLER+ +++ Sbjct: 179 SFGTATSPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGT 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ + LI +E ++G KY + RVI DH+RS SF I DG++P N RG Sbjct: 239 NTVFEADVLRLLISKTETLSGEKYHADEPLGAAFRVIADHVRSLSFAIVDGLIPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RR++ Y + LG+T+P + ++PAL MG AYPEL + I+E + E+E + Sbjct: 299 YVLRKILRRSVNYGKRLGFTQPFLAEIVPALVDAMGEAYPELRLSVSQIQEVMTIEEENY 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 K+L RG LL VL ++G+ AFKL DT+GLPLD + + + +D+ +F Sbjct: 359 FKSLHRGGNLLQQVLKSSSSSSTISGEDAFKLKDTYGLPLDEIALLAKDYNFS-VDLDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 Q +E + R+R + + T+ ++ +L +T F+GY L F Sbjct: 418 YQLEKEAKERSRKNVIK-SHNATDTVYDALSLGENST-FVGYHDLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++AI++ GE V +K ++ +TPFYAE GGQ+GD+G Sbjct: 466 -------------IEAIIKNGEQVSYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSD 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ +HH V +G L + ++ + R+ +S NH+ HLLH AL Sbjct: 513 GTFIVSHTTSPKAGMVIHHGEVSQGQLHSAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH K I +L SIE VN+ I +N V TR D Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAAYSD 632 Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + G KY+D VRVVS S LCGGTH TG++ I+ E ++ Sbjct: 633 VMNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHADFTGDLGYFRILKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA+TG+ A ++ L +A L+ + ++ +++ I +E ++ + + Sbjct: 687 TGIRRIEAVTGKEAEVLARQDNQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + +L L +I DV++ + + E +S L+ + L +KI ++ L K Sbjct: 747 ENKLIYSLLDKVIDRCQQIEDVSYFIYHLPESESHRLQQYANCLHQKIPVRLVSLWTTQK 806 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K + +++DL+ A DL ++ GG GG+ AQ + QA Sbjct: 807 NGKYIIFSRISDDLVKQGLKAKDLLQVLLTPC-GGRWGGKDIFAQGS---ADSLPQA 859 >gi|58336754|ref|YP_193339.1| alanyl-tRNA synthetase [Lactobacillus acidophilus NCFM] gi|227903315|ref|ZP_04021120.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] gi|75358009|sp|Q5FLW6|SYA_LACAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58254071|gb|AAV42308.1| ala-tRNA synthetase [Lactobacillus acidophilus NCFM] gi|227868944|gb|EEJ76365.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] Length = 879 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 328/918 (35%), Positives = 491/918 (53%), Gaps = 64/918 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T K G N ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENDEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEIMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIEKAKNSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S + + +L ++F Sbjct: 413 DAGLK-VDKKGFDAEMQAQKDRARKARGDLQSMGRQDV--TLMNIKDKSEF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------EYGVYEEPHAKLIDIVVDDKLVDKAN-GEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID + R L Sbjct: 506 QVADHGGIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPMEKGQEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELKS+E+ VN I Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPRELKSVEELVNQKIWD 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + SS CGGTHV +T +I Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----SDFSSEFCGGTHVDNTDQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I SES++ AG+RRIEA+T ++A +L + L + +K N+V +++ I Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEVVKATKPENIVDKIDSIE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E R Q ++N + + D+ ++ I +L+ + D + Sbjct: 741 NELRDSQKQVEALTKKINQAKAGEIFDNVKQAGDLTVIAAIADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + KA+++I + + L A DL + +A + GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLDQRALDKGLKAGDLIKKAAPLFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFL 896 G + AI V + Sbjct: 859 GKKPEGLNDAIKAVIDEI 876 >gi|300975107|ref|ZP_07172874.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1] gi|300308788|gb|EFJ63308.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 343/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + E+ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|300781084|ref|ZP_07090938.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030] gi|300532791|gb|EFK53852.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030] Length = 893 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 320/927 (34%), Positives = 478/927 (51%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59 IR F + F GH +PS+SLI +DPTL+F N+GMVPFK F GQ+ P + Sbjct: 1 MQTHEIRDRFTQHFVDAGHIPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFDSG 59 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+LAW LLT Sbjct: 60 TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIELAWSLLTNSQA 115 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 F LD RL++TVY ED+EA ++W+ G+ A++I R+ DNFWSM GPCGP SE Sbjct: 116 DGGFGLDPERLWVTVYTEDDEAAEIWENKIGVPAERIQRMGMEDNFWSMGVPGPCGPSSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGM 228 I++D+G G G + RY+EIWNLVFM+ + K I LP +IDTG+ Sbjct: 176 IYYDRGPE-HGKEGGPIADDNRYMEIWNLVFMESIRGEGDKKGGFEILGELPNKNIDTGL 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSS 282 G+ER+A +LQ N Y+ DL +I+A+E++TG Y + V RVI DH R++ Sbjct: 235 GIERLACILQGVDNVYETDLLHPVIEATEKLTGTTYGAGGKEGELSDVRFRVIADHSRTA 294 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +I DG+ P+NEGRGY+LRR++RR + ARLLG + + + M ++PE+ Q Sbjct: 295 MMIILDGVTPSNEGRGYILRRLLRRIVRSARLLGAQGTTIETFMNTIMDTMAPSFPEIEQ 354 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDI 400 + I +E++ F KTL+ G D + +L G AF+L+DT+G P+D+ Sbjct: 355 NRERILRVAVNEEKAFLKTLESGTHRFDEAAATVKGSGQTVLPGGQAFELHDTYGFPIDL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D+ +F+ A++EQR RA+A S +G ++ + T+F+G+ Sbjct: 415 TLEMAAEAGLE-VDMAAFDAAMKEQRDRAKADSKAKKTGNIDESLYREWVDAHPTEFVGF 473 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L S V +V+ GE V E G +VEV+ D TP Sbjct: 474 DTLDHD-----------------------SKVIGLVRGGEKVGEVGQGDEVEVILDITPM 510 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQN 579 YAE GGQL D G + L + DVQK ++VH A VE G L ++ ++ Sbjct: 511 YAEGGGQLADRGRIVVGDTVLSVHDVQKVGNKKLWVHKATVENGGLDLGQTVRTEVNPTW 570 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R H+ATHL+H AL +LG Q GS P LRFD ++ +TSA+L I Sbjct: 571 RHGARQAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTSAQLDEIAVIA 630 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N + + V T + E A GA AL G Y D VRVV + GG S LCGGTHV Sbjct: 631 NQAVDADFAVNTFETSLERAKEMGAMALFGENYGDEVRVVEI----GGPFSIELCGGTHV 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 + +I + ++ ESS+ +G RRIEA +G + + + LA LK + R Sbjct: 687 EHSSQIGPVAVLGESSVGSGARRIEAYSGMDSFAFFSKEAALASGLAEELKTPTDQLPER 746 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVM 813 + ++ E R + + + I D+ F++ + + +++++ Sbjct: 747 IAQLTERLRAAEKEIENLRKKELANQTGELVKQAETIGDIKFLAVKLPDGLTGGDMRTMA 806 Query: 814 DALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ ++ S ++++ S + K + T +D+ A + +GG G GG+ Sbjct: 807 TDLRGRLGSDPAVIVLASSTDGKVPFAVAATPGAVDKGIKAGQYVGMFGGYVGGKG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P +AQ G + + + + + K Sbjct: 866 PDLAQGSGSDASGIEAGFTALREEIGK 892 >gi|300976926|ref|ZP_07173678.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1] gi|301027052|ref|ZP_07190429.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1] gi|301049555|ref|ZP_07196510.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1] gi|300298680|gb|EFJ55065.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1] gi|300395217|gb|EFJ78755.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1] gi|300409940|gb|EFJ93478.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1] gi|315293661|gb|EFU53013.1| alanyl-tRNA synthetase [Escherichia coli MS 153-1] gi|315298718|gb|EFU57972.1| alanyl-tRNA synthetase [Escherichia coli MS 16-3] gi|324005757|gb|EGB74976.1| alanyl-tRNA synthetase [Escherichia coli MS 57-2] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|327251414|gb|EGE63100.1| alanyl-tRNA synthetase [Escherichia coli STEC_7v] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVNFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|300930550|ref|ZP_07145945.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1] gi|300947031|ref|ZP_07161254.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1] gi|300954931|ref|ZP_07167347.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1] gi|301645328|ref|ZP_07245276.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1] gi|312973095|ref|ZP_07787268.1| alanyl-tRNA synthetase [Escherichia coli 1827-70] gi|300318120|gb|EFJ67904.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1] gi|300453345|gb|EFK16965.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1] gi|300461571|gb|EFK25064.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1] gi|301076398|gb|EFK91204.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1] gi|310333037|gb|EFQ00251.1| alanyl-tRNA synthetase [Escherichia coli 1827-70] gi|315615081|gb|EFU95718.1| alanyl-tRNA synthetase [Escherichia coli 3431] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|312965610|ref|ZP_07779840.1| alanyl-tRNA synthetase [Escherichia coli 2362-75] gi|312289759|gb|EFR17649.1| alanyl-tRNA synthetase [Escherichia coli 2362-75] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LNEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|222153358|ref|YP_002562535.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J] gi|222114171|emb|CAR42689.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J] Length = 873 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 324/916 (35%), Positives = 495/916 (54%), Gaps = 66/916 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + F Sbjct: 64 TNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y ED +++ W + G+ +I + +NFW + GP GP +EIFFD+ Sbjct: 120 FPKEKLYMTYYPEDMDSYNRWISL-GVDPSHLIPL--EENFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I E+++G Y+ + + ++ +VI DH+R+ SF I DG Sbjct: 236 RLVAVMQGAKTNFETDLFMPIISEVEKLSGKPYDQDGDNMSFKVIADHIRALSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA+ + R LG TE + L+ + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMESYYPEILEKRDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E+E F +T+D G LD +L+ L ++ + L G FKLYDT+G P+++ +++ Sbjct: 356 IKREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDIFKLYDTYGFPVELTEELAEDA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G ID F A++EQ+ RARA + GS + +L A+ F Sbjct: 416 GYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGITEASVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + IV E + GQ +VFD+TPFYAE GGQ+ Sbjct: 462 -------------SYEEETLTANLSVIVVDNERSDMVSEGQ-ALLVFDRTPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G D + +KA H + L + S VL ID++ R + NH Sbjct: 508 ADHGVIKNDKGDILAKVTDVQKAPNGQALHTVDVLASLSIDSSYVLEIDHKRRYAVEKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G H +Q GS + LRFD TH + +T+ EL+ IE+ VN I + Sbjct: 568 TATHLLHAALHNIIGDHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIWNAI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + + A + GA AL G KY VRVV++ G +S LCGGTH+S+T EI L Sbjct: 628 AVNTIETDVDTAKSMGAMALFGEKYGKVVRVVTI-----GDYSVELCGGTHLSNTSEIGL 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+TGQ+A +++ LK +A+ LK Q V +V + E+ Sbjct: 683 FKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVASLSEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R LQ +A+ K + + + +++ +S D+ L++ D ++K Sbjct: 743 VRDLQKENAELKEKAAAAQAGDLFKDVKEANGIRYIAKQVSVSDAGALRTFADNWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S I++LV EK ++ T+D +A +L + A ++ G GGG+P MA +GG + Sbjct: 803 SDILVLVASIGEKVNVLVASQTKD----VHAGNLIKELAPIVS-GRGGGKPDMAMAGGSD 857 Query: 882 GNKADQAIAGVASFLK 897 ++ + ++ VA +K Sbjct: 858 ASQIETLLSSVADKMK 873 >gi|300899932|ref|ZP_07118138.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1] gi|300356519|gb|EFJ72389.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1] Length = 784 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGTNFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|111224623|ref|YP_715417.1| alanyl-tRNA synthetase [Frankia alni ACN14a] gi|111152155|emb|CAJ63885.1| alanyl-tRNA synthetase [Frankia alni ACN14a] Length = 884 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 480/915 (52%), Gaps = 56/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR+ FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + Sbjct: 4 MDTAEIRSRFLNHFARRGHTIVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLATPWPRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQK VR D++NVGRT RH +FF+M GNFSFG YFK AI A++LL F Sbjct: 63 TSVQKVVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFK 118 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+ TVY +D+EA +W+++ L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 119 PDDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGA 176 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236 G G + ERY+E+WNLVFMQ+E+ LP +IDTGMGLERMAT+ Sbjct: 177 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATI 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ + Q+TG +Y + + V RV+ DH R+++ LIADG++P+N Sbjct: 236 LQGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M L A+ T MG YPEL+ I +E Sbjct: 296 EGRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL G + D + + L GD AFKL+DT+G P+D+ ++ GL+ Sbjct: 356 EASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS- 414 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR A+A G + + + + GAT F GY+ L Sbjct: 415 VDEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL-------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V +V G + G +V VV D TPFYAE+GGQ Sbjct: 467 ---------------SRESGVVGLVGIADGAGLTVVGEGDEVGVVLDATPFYAESGGQEP 511 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G DG +++ DVQ+ + +H V G LR + +D RR +S +H+A Sbjct: 512 DFGLLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTA 571 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H A LG +Q GS +P LRFD + + L +ED +N++ ++LPV Sbjct: 572 THLVHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPV 631 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + +E+A GA AL G KY D VRVV D G ++ LCGGTHV+S+ ++ + Sbjct: 632 RAFVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVK 686 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++SESSI AG RR+E + G A +L + + L++ LK + RV +I R Sbjct: 687 LLSESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRD 746 Query: 770 LQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823 + + + + V ++ + +++ + ++ ++ Sbjct: 747 AERELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGR 806 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ + + + V++ + A +L R S L GG GGG+P +AQ GG N Sbjct: 807 PAVVAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGNSE 865 Query: 884 KADQAIAGVASFLKK 898 A + + + Sbjct: 866 MIPAVFAKLRGLVAE 880 >gi|205830106|sp|Q0RF65|SYA_FRAAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 881 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 480/915 (52%), Gaps = 56/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR+ FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + Sbjct: 1 MDTAEIRSRFLNHFARRGHTIVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLATPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQK VR D++NVGRT RH +FF+M GNFSFG YFK AI A++LL F Sbjct: 60 TSVQKVVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFK 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+ TVY +D+EA +W+++ L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 116 PDDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGA 173 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236 G G + ERY+E+WNLVFMQ+E+ LP +IDTGMGLERMAT+ Sbjct: 174 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATI 232 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ + Q+TG +Y + + V RV+ DH R+++ LIADG++P+N Sbjct: 233 LQGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSN 292 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M L A+ T MG YPEL+ I +E Sbjct: 293 EGRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAE 352 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL G + D + + L GD AFKL+DT+G P+D+ ++ GL+ Sbjct: 353 EASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS- 411 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR A+A G + + + + GAT F GY+ L Sbjct: 412 VDEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V +V G + G +V VV D TPFYAE+GGQ Sbjct: 464 ---------------SRESGVVGLVGIADGAGLTVVGEGDEVGVVLDATPFYAESGGQEP 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G DG +++ DVQ+ + +H V G LR + +D RR +S +H+A Sbjct: 509 DFGLLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H A LG +Q GS +P LRFD + + L +ED +N++ ++LPV Sbjct: 569 THLVHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + +E+A GA AL G KY D VRVV D G ++ LCGGTHV+S+ ++ + Sbjct: 629 RAFVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++SESSI AG RR+E + G A +L + + L++ LK + RV +I R Sbjct: 684 LLSESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRD 743 Query: 770 LQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823 + + + + V ++ + +++ + ++ ++ Sbjct: 744 AERELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGR 803 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ + + + V++ + A +L R S L GG GGG+P +AQ GG N Sbjct: 804 PAVVAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGNSE 862 Query: 884 KADQAIAGVASFLKK 898 A + + + Sbjct: 863 MIPAVFAKLRGLVAE 877 >gi|116627351|ref|YP_819970.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9] gi|122268047|sp|Q03LZ8|SYA_STRTD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116100628|gb|ABJ65774.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9] Length = 872 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 324/916 (35%), Positives = 495/916 (54%), Gaps = 68/916 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FDL + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + ++ +VI DH+RS +F I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L++L K + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F+ Y+ Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + IV + SGQ +VF+QTPFYAE G Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + ++A H + G L + L ID+ R ++ Sbjct: 505 GQVADHGTISDAAGTTVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHSRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G+H Q GS + LRFD TH + +T EL++IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + PV T + + A + GA AL G KY RVRVVS+ G +S LCGGTHV++T E Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LKS+A+ LK Q V +V + Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ LQ +A K + + V +++ + D+ L++ D ++ Sbjct: 740 QEQLHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L +EK ++ +E+ +A +L ++ A ++ G GGG+P+MA +G Sbjct: 800 ADYSDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPNMAMAG 854 Query: 879 GPNGNKADQAIAGVAS 894 G + N ++ VA Sbjct: 855 GSDANSIQDLLSAVAE 870 >gi|163840721|ref|YP_001625126.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] gi|205830238|sp|A9WSC4|SYA_RENSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|162954197|gb|ABY23712.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] Length = 896 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 323/928 (34%), Positives = 477/928 (51%), Gaps = 68/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +L+FF GH ++PS+SLI DP+++F +GMVPF +G+EK Y Sbjct: 1 MKTQDIAQRWLDFFAAKGHTVVPSASLISA-DPSILFNIAGMVPFVPYLSGREKAPYDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D+D VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 TSVQKCIRTA----DIDEVGKTVRHGTFFQMCGNFSFGDYFKEGAITFAWELLTSSIADG 115 Query: 118 -FDLDQRRLYITVY----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LD RL+ TVY ++DEEA +W+ G+ ++I DNFWS + GP GPC Sbjct: 116 GYGLDPSRLWATVYVDGTEKDEEARAIWRDKIGIPEERIQGTGKADNFWSTGQPGPGGPC 175 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDT 226 SEI++D G G G + RYIEIWNLVFMQ++ + + LP +IDT Sbjct: 176 SEIYYDLGAKY-GQEGGPIVDETRYIEIWNLVFMQYQLSAVRSKTDFDIAGDLPNRNIDT 234 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVD 277 G+GLER+A +LQ N Y+ D + ++ A+ ++ G Y + V RV+ D Sbjct: 235 GLGLERLAMILQGVENLYETDQVRPVLDAAAELAGKDYTSTVDPADPHHADDVRLRVVAD 294 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337 H+RS+ LIADG+ P+NEGRGYVLRR++RRA+ RL+G +P + LLP M Y Sbjct: 295 HIRSALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLMGVEKPCLPALLPVSREAMKGFY 354 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGL 396 P + + I +E++ F +T+ G LD ++ K++ L+G AF L+DT+G Sbjct: 355 PAVEEDFERISRIAYAEEKSFLRTIASGTARLDEAVTESKAKNQPLSGAEAFALHDTYGF 414 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ ++ GL +D F + EQR RA+A S SG + F+ G T Sbjct: 415 PIDLTLEMAAEAGL-AVDETGFRALMLEQRQRAQADSREKKSGHADLSAFNELLAQGQTV 473 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F GY L G S ++ ++ G+ + +A GQ++E+V Sbjct: 474 FTGYSELDG-----------------------ESAIRGLLSGGQPIAKASQGQEIELVLA 510 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +TPFYAEAGGQ DTG GDG +++ DVQ+ + + VH AIV G + S+ +D Sbjct: 511 ETPFYAEAGGQAADTGLISGDGFVIEVLDVQRPVKDLSVHKAIVREGEVAIGASVRAAVD 570 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R H+ TH++H AL ILG Q GS LRFD + +++A IE Sbjct: 571 RERRHAAEQAHTGTHIVHAALHQILGPEALQRGSFNKAGYLRFDFAWGEGLSTATRSEIE 630 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N I N V T M ++A A GA AL G Y RVRVV + G S LCGG Sbjct: 631 EVANIAIRNNYSVQTTEMPIDEAKALGAMALFGENYGSRVRVVEI----DGAWSRELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV +T I L ++ E S+ G RR+EA G A HL + + L +KV + Sbjct: 687 THVDTTSRIGSLTLLGEQSVGYGNRRVEAFVGMDAFRHLAAERALVSELTEIMKVPSTQL 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELK 810 R+ + R + + + ++ ++H + ++ + EL+ Sbjct: 747 ADRIGATLAKLRATEKELDRLRKAQLTAAAGELTTKAQQVGKTRLLTHDVGQIGGADELR 806 Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 S+ L++++ S ++ L G S ++ ++ A L +L+A VLGGGG Sbjct: 807 SLALDLRERLGSEAAVVALTGESNDRPMVLVATNEAARAAGVKAGALVKLAAGVLGGGG- 865 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+ +AQ GG N + A+A + + Sbjct: 866 GGKDDVAQGGGSNVGQIPAALAAINQAV 893 >gi|300941066|ref|ZP_07155582.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1] gi|300454193|gb|EFK17686.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1] Length = 784 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|315289216|gb|EFU48614.1| alanyl-tRNA synthetase [Escherichia coli MS 110-3] Length = 784 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 493/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNESRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F+ A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|157115817|ref|XP_001658296.1| alanyl-tRNA synthetase [Aedes aegypti] gi|108883466|gb|EAT47691.1| alanyl-tRNA synthetase [Aedes aegypti] Length = 966 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 296/969 (30%), Positives = 456/969 (47%), Gaps = 90/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 IR FL+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 6 TAKQIRNAFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMAK 65 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT Sbjct: 66 WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDR 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L + RLY+T + + D E ++W K+ G+ + I+ + DNFW M ETGPC Sbjct: 126 LKLPKDRLYVTYFGGHPESGLEPDLECREIWIKL-GVKEEHILPGSMKDNFWEMGETGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ FD+ + + +EIWNLVF+QF ++ +LPK ID GMG Sbjct: 185 GPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 ER+ +V+Q+K +NYD D+F L +A ++ G + +RV+ DH R Sbjct: 244 FERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPSYQGRVGADDVDGVDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G +PE Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVFLLGDTFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G P+D Sbjct: 364 VKKDPQNIKNIINEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPID 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQF 457 + Q + + + ID+ + +A E ++ + + L+EK T Sbjct: 424 LTQLMAEEKNMT-IDMEGYEKAKHESYILSQGKEKSKAATVDLDVHAISELQEKKVPT-- 480 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 K K + V A+ V+E +GQ+ V+ D+ Sbjct: 481 -------TDDSFKYRYKADVDPMAEYKFEPCNGKVLALRANNIFVDEVQAGQECAVILDK 533 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ D G + G +V G ++ H V GILR + +D Sbjct: 534 TNFYAESGGQIYDQGYLVKVGDESTEFNVNLVYNRGGYIIHIGVVEGILRVGDEVACHMD 593 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R+ NHSATH L+H+L +LG Q GS + P+ LRFD T+ +T ++ E Sbjct: 594 TLRRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKSAMTVEQVAESE 653 Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 +++ +N+ + + G ++ Y D VRV+S E Sbjct: 654 RLTREVVKKNMQIYAKESKLSVAKSIKGLRSVFDEVYPDPVRVISFGVPVENLEANPEGE 713 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 +G S CGGTH+ +G + I +E +I GIRRI A+TG A L + Sbjct: 714 EGVETSVEFCGGTHLHQSGHMWDFVITTEEAIAKGIRRIVALTGPEALKALKKTELLENE 773 Query: 745 LASFLKVSQG---------NVVGRVEEIWEE-----------------YRKLQLIHAKRK 778 L + LK + +V ++ E+ E+ + L+ ++ Sbjct: 774 L-NALKSTIEADKTGKDSKELVKKIVELNEDVSQAVIPYVKKDEIRNVLKSLKKTLDDKE 832 Query: 779 LQL---------NVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLV 828 D F+ H + ++ K L S + ++K + V Sbjct: 833 RAARAAVSTTVVEKAKELSESNKDAPFLVHRMEAYNNTKALDSALKEVRKINPEQSALFV 892 Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + KK L V + +++ A + + + GG GGG+P AQ+ G N +K + Sbjct: 893 SSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM-GGKGGGKPESAQASGANFDKVE 951 Query: 887 QAIAGVASF 895 + + F Sbjct: 952 EILELARQF 960 >gi|313157475|gb|EFR56894.1| alanine--tRNA ligase [Alistipes sp. HGB5] Length = 873 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 315/929 (33%), Positives = 473/929 (50%), Gaps = 95/929 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++PS+ ++ DPTLMFTN+GM FK+IF G Y Sbjct: 1 MESNKIRRAFLDFFESKGHVIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+S+G YFK+ AI+ AW+LL + L Sbjct: 61 ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLGGVYKLP 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y TV++ D+EA+ WK+ L D IIR +DNFW M ETGPCGPCS Sbjct: 121 ADRMYATVFEGSEEDGVPFDQEAYDYWKQF--LPEDHIIRGNKHDNFWEMGETGPCGPCS 178 Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI FD + G + + IEIWNLVFMQF ++ LP ++DTGMG Sbjct: 179 EIHFDLRDEAEIAAKPGREMVNAGHPQVIEIWNLVFMQFNRKANGSLEPLPARNVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ +LQ K +NYD D+F+ IQ Q++G Y + V RVI DHLR+ +F IA Sbjct: 239 FERLCMILQGKKSNYDTDVFQPTIQRISQLSGKAYGADAKCDVAMRVIADHLRAIAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y LG+TEP + L+P L +MG +PEL + L Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTICKLVPGLVEQMGEQFPELKAQQSL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ + E+ F +TL G+ LLDGV+ E+++G AF+LYDT G P+D+ + I Sbjct: 359 IEKVIEEEEASFLRTLATGINLLDGVIEKTKGEGRELISGKDAFELYDTFGFPIDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +G G+D+ +F L+ Q+ R+R + + + F GYD L Sbjct: 419 AREQG-VGVDLAAFETELQAQKERSRNA------AAVDTDDWVELFPIRESLFTGYDTLT 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R+V + ++VFD+TPFY + Sbjct: 472 EQVRIARYRRVTSKGKTS----------------------------YQLVFDRTPFYGNS 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G R+ + +K+ I + ++V R+ + Sbjct: 504 GGQIGDIGYIENADERIAVVATEKENGLIIHIVKELPENPAAGFTAVVDAA---KRQSAA 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHL+H AL +LG HV Q GS +TP+ LRFD +H + +T EL+ +E VN + Sbjct: 561 NNHTATHLMHEALRKVLGQHVEQKGSMVTPEVLRFDFSHFQKMTPQELREVEMLVNRAVR 620 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N P+ R +E+A GA L G KY D+VR+V S LCGGTH S+TG Sbjct: 621 ANYPLEENREATKEEAEKCGAMMLFGEKYGDKVRMVRFGS------SVELCGGTHTSATG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I I++ES+I AG+RRIEA+TG+RA + ++ ++ ++ +L V+ V+++ Sbjct: 675 NIGFFKILNESAISAGVRRIEAVTGERAEQIIYAAEDTMRDISDYLHNP--QVLQAVKKM 732 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIA-----DVNFMSHIISEVDSKELKSVMDALQK 818 +E L + + + + V ++ ++ + +K + L+ Sbjct: 733 FESNEALSKEVETMRREQVAQWADKIIASTPERRGVQLIATQ-TDRTPEFVKDLAYCLRA 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM--- 874 + ++++ G + K + +++ E++ NA + R +AK+ M Sbjct: 792 RAPK-LVLVQGSVNDGKPMLTVMLGEEITAQGVNAGAVVREAAKL-----------MQGG 839 Query: 875 -------AQSGGPNGNKADQAIAGVASFL 896 A +GG N + AI + Sbjct: 840 GGGQAFFATAGGKNPDGLQAAIDKAVELI 868 >gi|256844557|ref|ZP_05550043.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] gi|256613635|gb|EEU18838.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] Length = 879 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 321/919 (34%), Positives = 487/919 (52%), Gaps = 62/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I +E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ KD+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ + Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL +D + R L Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV +T +I Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I SES++ AG+RRIEA+T ++A +L + + L + +K N+V +++ + Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q ++N + D+ ++ +L+ + D + Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L + K ++ + + L A +L +++A + GGGG GGRP+MAQ+GG Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKALKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFLKK 898 N + AI V + K Sbjct: 860 KNPAGLNDAIKAVIDEISK 878 >gi|313648345|gb|EFS12789.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] Length = 784 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 344/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ ID R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADIDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IMN E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMNLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|332087414|gb|EGI92542.1| alanyl-tRNA synthetase [Shigella boydii 5216-82] Length = 784 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMALEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|302801948|ref|XP_002982730.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii] gi|300149829|gb|EFJ16483.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii] Length = 934 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 315/941 (33%), Positives = 487/941 (51%), Gaps = 86/941 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ--------- 53 + +IR TFL FF GH LLP SSL+P +DPT++ T +GM+ FK IF GQ Sbjct: 23 SGDAIRRTFLNFFAARGHHLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDSVLL 81 Query: 54 ----EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109 + T QKC+R ND++NVGRT+RHHTFFEMLGNFSFG YFK AI+ Sbjct: 82 SRAQVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRW 137 Query: 110 AWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 AW+L T E+ L R++++VY +D+EA +W+ G+ ++I ++ DNFW+ TGPC Sbjct: 138 AWELATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPC 197 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE++FD + R++E +NLVFMQ+ + + + +L + +IDTG+G Sbjct: 198 GPCSEMYFDFHPERGTDDAVDLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLG 257 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLI 286 LERMA +LQ+ NNY+ DL +IQ + ++ G+ Y + +VI DH R+ +LI Sbjct: 258 LERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLI 317 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYP 338 +DG+ P+N GRGY++RR++RR + RLLG + L + + + P Sbjct: 318 SDGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVVSMSSNVDP 377 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--------GKDEILNGDVAFKL 390 ++ Q I E L E+ RF +TL+RG LL L +L+G F L Sbjct: 378 DVKQNAGRIFEELDKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSAKPVLSGKDVFML 437 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS--LGLGSGTTEKIWFSL 448 YDT+G P++I +++ +D+ F +E QR +++ + L +G T SL Sbjct: 438 YDTYGFPVEITEEVAGE-NDVQVDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSL 496 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 E T+F+GY L + V+A++ +G +V E G Sbjct: 497 VE----TKFVGYTTLESI-----------------------AEVRALIARGGLVTEVREG 529 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGI 564 +VE+V D TPFYAE+GGQ+GD G + G +Q+ DVQK + +H IV++G Sbjct: 530 DEVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGT 589 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 + ++ ++ RR+ H+ATHLL AL +LGS SQ GS + D LRFD T S Sbjct: 590 MAVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLS 649 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684 + + E+ +E VN+ I+ +P+ ++M +A SGA A+ G KY ++VRVV V Sbjct: 650 RKMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVPG- 708 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 S LCGGTHVS+T EI IV I +G++RIEA+ G H+ ++ L+ Sbjct: 709 ----ISKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGDAFIDHIFARENALRQ 764 Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFM 797 + S LK ++ R+ + +E + L+ + ++ + + V + Sbjct: 765 ICSSLKAKPEDLPARISGLQDELKALKSDATSLRAKVAIAEADVLTGRALLVGPGGVRIL 824 Query: 798 SHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL 855 + D L++ ++ +L +++ K S++ + ++ A Sbjct: 825 VGALETTDVDSLRAAVEHCVALHGDPSATLLGACTEDGKVSLVAAFSPSVVKHGLKAGAF 884 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 AK+ GGGG GGRP AQ+GG +K AI + L Sbjct: 885 VGSVAKLCGGGG-GGRPDFAQAGGKLPDKLPGAIEKAKADL 924 >gi|94988809|ref|YP_596910.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94992695|ref|YP_600794.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] gi|205830223|sp|Q1JB08|SYA_STRPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830224|sp|Q1JL53|SYA_STRPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94542317|gb|ABF32366.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94546203|gb|ABF36250.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] Length = 872 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKHDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|332088620|gb|EGI93733.1| alanyl-tRNA synthetase [Shigella dysenteriae 155-74] Length = 784 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|302823356|ref|XP_002993331.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii] gi|300138840|gb|EFJ05593.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii] Length = 920 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 316/941 (33%), Positives = 489/941 (51%), Gaps = 87/941 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ--------- 53 + +IR TFL FF GH+LLP SSL+P +DPT++ T +GM+ FK IF GQ Sbjct: 10 SGDAIRRTFLNFFAARGHQLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDNVLL 68 Query: 54 ----EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109 + T QKC+R ND++NVGRT+RHHTFFEMLGNFSFG YFK AI+ Sbjct: 69 SRAQVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRW 124 Query: 110 AWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 AW+L T E+ L R++++VY +D+EA +W+ G+ ++I ++ DNFW+ TGPC Sbjct: 125 AWELATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE++FD G + R++E +NLVFMQ+ + + + +L + +IDTG+G Sbjct: 185 GPCSEMYFDFHPE-RGTDDADLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLI 286 LERMA +LQ+ NNY+ DL +IQ + ++ G+ Y + +VI DH R+ +LI Sbjct: 244 LERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLI 303 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYP 338 +DG+ P+N GRGY++RR++RR + RLLG + L + + + P Sbjct: 304 SDGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVISMSSNVDP 363 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--------GKDEILNGDVAFKL 390 ++ Q I E L E+ RF +TL+RG LL L +L+G F L Sbjct: 364 DVKQNAGRIFEELEKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSTKPVLSGKDVFML 423 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS--LGLGSGTTEKIWFSL 448 YDT+G P++I +++ +D+ F +E QR +++ + L +G T SL Sbjct: 424 YDTYGFPVEITEEVAGE-NDVQVDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSL 482 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 E T+F+GY L + V+A++ +G +V E G Sbjct: 483 VE----TKFVGYTTLESI-----------------------AEVRALIARGGLVTEVREG 515 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGI 564 +VE+V D TPFYAE+GGQ+GD G + G +Q+ DVQK + +H IV++G Sbjct: 516 DEVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGT 575 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 + ++ ++ RR+ H+ATHLL AL +LGS SQ GS + D LRFD T S Sbjct: 576 MAVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLS 635 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684 + + E+ +E VN+ I+ +P+ ++M +A SGA A+ G KY ++VRVV V Sbjct: 636 RKMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVPG- 694 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 S LCGGTHVS+T EI IV I +G++RIEA+ G H+ ++ L+ Sbjct: 695 ----ISKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGNAFIDHIFARENALRQ 750 Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFM 797 + S LK ++ R+ + +E + L+ + ++ + + V + Sbjct: 751 ICSSLKAKPEDLPARISGLQDELKALKSEATSLRAKVAIAEADVLTGRALLVGPGGVRIL 810 Query: 798 SHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL 855 + D L++ ++ +L +++ K S++ + ++ A Sbjct: 811 VGALETTDVDSLRAAVEHCVALHGDPSATLLGACTEDGKVSLVAAFSPSVVKHGLKAGAF 870 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 AK+ GGGG GGRP AQ+GG +K AI + L Sbjct: 871 VGSVAKLCGGGG-GGRPDFAQAGGKLPDKLPGAIEKAKADL 910 >gi|50914453|ref|YP_060425.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] gi|59798488|sp|Q5XBH1|SYA_STRP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50903527|gb|AAT87242.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] Length = 872 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++++++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELIEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|300820470|ref|ZP_07100621.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300906808|ref|ZP_07124489.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300924257|ref|ZP_07140242.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1] gi|301305420|ref|ZP_07211514.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1] gi|301326280|ref|ZP_07219656.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1] gi|309795155|ref|ZP_07689574.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7] gi|300401409|gb|EFJ84947.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300419533|gb|EFK02844.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1] gi|300526734|gb|EFK47803.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300839340|gb|EFK67100.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1] gi|300847020|gb|EFK74780.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1] gi|308121126|gb|EFO58388.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7] gi|315254472|gb|EFU34440.1| alanyl-tRNA synthetase [Escherichia coli MS 85-1] gi|323154906|gb|EFZ41098.1| alanyl-tRNA synthetase [Escherichia coli EPECa14] gi|323159803|gb|EFZ45775.1| alanyl-tRNA synthetase [Escherichia coli E128010] gi|323167133|gb|EFZ52851.1| alanyl-tRNA synthetase [Shigella sonnei 53G] gi|323183219|gb|EFZ68616.1| alanyl-tRNA synthetase [Escherichia coli 1357] gi|324017048|gb|EGB86267.1| alanyl-tRNA synthetase [Escherichia coli MS 117-3] Length = 784 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|225010000|ref|ZP_03700472.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C] gi|225005479|gb|EEG43429.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C] Length = 879 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 339/926 (36%), Positives = 489/926 (52%), Gaps = 80/926 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL FF+ H+++PSS ++ +DPTLMFTN+GM PFK F G P Q V Sbjct: 1 MKSQDIRAQFLAFFKDKNHQIVPSSPMVIKDDPTLMFTNAGMNPFKPYFLGNTLPKNQRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-------GYFKERAIQLAWDLL 114 QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG GYFK+ AIQ AW LL Sbjct: 61 ADTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGVAKNNVDGYFKQEAIQWAWSLL 120 Query: 115 TKEFDLDQRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 F +D LY+TV++ D EA LWK I + +I+ DNFW M + Sbjct: 121 VDVFKIDPNSLYVTVFEGSKDADQLEMDAEALSLWKAI--VPESQILFGNKKDNFWEMGD 178 Query: 166 TGPCGPCSEIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221 GPCGPCSEI D + G + + + +EIWNLVFMQF ++ LP Sbjct: 179 QGPCGPCSEIHVDIRTPEEKASVSGASLVNMDHPQVVEIWNLVFMQFNRKANGILEPLPA 238 Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +DTGMG ER+ VLQ +NYD D+F +I+ E ++G Y + + RVI DH+ Sbjct: 239 KHVDTGMGFERLCMVLQGVQSNYDTDVFTPIIKEIEVISGHSYGKDTPTDIAIRVIADHI 298 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338 R+ +F IADG LP+N G GYV+RRI+RRA+ Y L EP M L+ L MG A+P Sbjct: 299 RAVAFSIADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMFKLVQVLSKTMGDAFP 358 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL K LI+ ++ E++ F +TL++GL LLD ++ D++L G+ AF+LYDT+G P+ Sbjct: 359 ELNSQKQLIQNVIKEEEQSFLRTLEQGLQLLDTLILTAK-DKVLAGEKAFELYDTYGFPI 417 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ IL RG +D F ++++ Q+ R+RA S +++ W L E +FI Sbjct: 418 DLTALILSERGY-ALDQSGFEKSMQVQKQRSRAA-----SEVSKEDWEVLLED-DTQEFI 470 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GYDLL + + RK V G+ ++VF+ T Sbjct: 471 GYDLLETQVKIAKYRK---------------------------VTSKKEGEMYQLVFNLT 503 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFY E GGQ+GD G + KK +H + +S ++D + Sbjct: 504 PFYPEGGGQVGDKGYLEAPNGDVTYIVDTKKENNEIIHFS--STLPKDPRVSFKASVDKK 561 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R + S NH+ATHLLH AL ILG+HV+Q GS + LRFD +H +TS +LK IED Sbjct: 562 QRDRTSKNHTATHLLHQALRAILGTHVAQKGSAVHSKYLRFDFSHFSKVTSEQLKEIEDY 621 Query: 639 VNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I ++P+ R A A GA AL G KY D VR + HS LCGGT Sbjct: 622 VNARIDGHIPLEEHRNRPLVQAQADGAMALFGEKYGDTVRSIRFG------HSIELCGGT 675 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV +TG+I I ES++ +GIRRIEAIT + + + D+ L+ + + L+++ V Sbjct: 676 HVKNTGDIWQFKITGESAVASGIRRIEAITSDAVKDYYLKTDQTLQQVLNQLQINTDPV- 734 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSV 812 + ++ EE+ +L+ + + + S +I V F++ +S +D+ +K + Sbjct: 735 TAITKLQEEFAQLKTTLTALQKEKAGDVGKSLAASFEEINGVRFLAAEVS-LDASAMKDL 793 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGG 870 L + + +L+G E KA + ++++LL NA + + + + GGG GG Sbjct: 794 CFELAAQSPNT-FLLLGAQYEGKALLACYISKELLTEKSLNAGQVVKTLGQYIQGGG-GG 851 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P A +GG N +AIA F+ Sbjct: 852 QPFFATAGGKNPEGIAEAIAHAKDFI 877 >gi|71903788|ref|YP_280591.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] gi|83305861|sp|Q48SS4|SYA_STRPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71802883|gb|AAX72236.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] Length = 872 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|293400450|ref|ZP_06644595.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305476|gb|EFE46720.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 893 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 331/916 (36%), Positives = 499/916 (54%), Gaps = 63/916 (6%) Query: 1 MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ + IR FL++F+K+GH + P +SLIP NDPTL++ N+G+ K F G KP Sbjct: 20 MKNLTGNQIRQLFLDYFKKHGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGTVKPEC 79 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT E Sbjct: 80 PRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEE 135 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ RLYITVY +DEEA+ +W G+ I++ T DNFW + E GPCGP +EIF Sbjct: 136 YIGFDKDRLYITVYIDDEEAYDIWTNEIGVDPSHILK--TADNFWQIGE-GPCGPDTEIF 192 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 +D+GE E +RYIE+WN VF QF+ + ++ LP+ +IDTGM Sbjct: 193 YDRGEAYDPEGLGEKLFFEEMENDRYIEVWNNVFSQFDAKEGVARKDYKELPQKNIDTGM 252 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-NNIVNHRVIVDHLRSSSFLIA 287 GLER+ ++Q N+D DLF LI A EQ T M+YE N + RVI DH+R+ +F +A Sbjct: 253 GLERLTCLVQNGETNFDTDLFLPLIHACEQYTSMRYEDAENKMAFRVIADHIRTVTFALA 312 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG L ANEGRGYVLRR++RRA+ + R L M L+P + M YP + + I Sbjct: 313 DGALFANEGRGYVLRRVLRRAVRFGRKLKIEGAFMYKLVPVVYEIMKDFYPYIEEKIDYI 372 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E+ +++E+ERF TL G LL V+ +++L+G AFKLYDT+G PL++ +I Sbjct: 373 EKLVKAEEERFHATLADGEKLLLDVMEKNKDNKLLDGVTAFKLYDTYGFPLELTCEIAEE 432 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G +D+ F++ +++QR RAR + S +++ L ++FIGYD Sbjct: 433 SGY-QVDVQGFDEEMKKQRERARNAREDVESMSSQSA--DLMAFTQDSKFIGYDE----- 484 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + V A+ + G+ V+ + +++ + T FYAE+GGQ Sbjct: 485 ------------------RTCDAQVIALFKDGKQVDAIS--DEGDIILNTTVFYAESGGQ 524 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G +G +I + K +H ++E G L L L +D + R ++ NH Sbjct: 525 IGDSGSFMG-DALGRIVNTVKAPHKQHLHKVVIEEGCLHVGSKLQLAVDNKKRDIITSNH 583 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THLL AL ++G+H+ Q GS ++ + LRFD TH + ++ +LK IE VN I+++ Sbjct: 584 SCTHLLQSALKKVVGNHIQQAGSFVSDEYLRFDFTHFEKVSVQQLKEIEQLVNRFISEHH 643 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV M E+A SGA AL KY D VRVV++ G S CGG HV++T EI + Sbjct: 644 PVSKVEMPIEEAKQSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGI 698 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766 I+SE SI +GIRRI A TG A +++ L+ +A LK+ NV +VE++ E Sbjct: 699 CKIISEESIGSGIRRITAKTGYSAYEEFAAEEKTLRHIADDLKMKSIVNVDTKVEQVLHE 758 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +L+ A + ++ + + + + D+ LK + ++ + + Sbjct: 759 NAQLKKELAALQSEMFTLKANELIHEVKECNGRHVLIKRMDGADANALKDIASTIKAQ-K 817 Query: 822 SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +I+ + K + + + D DL + +A +L G GGGR +AQ+GG Sbjct: 818 EHVIVFLASVCNDKVVFVAGADKLAVADGIKCGDLVKEAA-MLCDGKGGGRADLAQAGGK 876 Query: 881 NGNKADQAIAGVASFL 896 + K D+A+ + + L Sbjct: 877 DVTKVDEAVEFIKNKL 892 >gi|309786227|ref|ZP_07680855.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617] gi|308925972|gb|EFP71451.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617] Length = 784 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779 >gi|195397897|ref|XP_002057564.1| GJ18196 [Drosophila virilis] gi|194141218|gb|EDW57637.1| GJ18196 [Drosophila virilis] Length = 967 Score = 725 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 301/973 (30%), Positives = 455/973 (46%), Gaps = 86/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R T+L FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKFLTAKEVRDTYLNFFKEKQHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT +L + RLY+T + + D E ++W + GL + I+ + DNFW M E Sbjct: 121 LTVRLNLPKDRLYVTYFGGDVASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ +++ +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + G + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTH 394 A+PE+ + I + + E+ +F KTL RG LL+ + L + GDVA++LYDT+ Sbjct: 359 AFPEVKKDPQQIMDIINEEELQFLKTLTRGRNLLNRTIEKLGANQTTIPGDVAWRLYDTY 418 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ Q + + + + + + S G G+ E+I + Sbjct: 419 GFPVDLTQLMAEEKS-----LQIDMAGYDAAKQNSYILSQGKGASKIEEINLDVHAISQL 473 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + G F + V ++ + +S + A+ + + V+E SGQK +V Sbjct: 474 QE-QG-VPPTNDSFKYKYEAVSNERDSAYNYSECTSKIVALRYENKFVQEISSGQKAGIV 531 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE+GGQ+ D G + + G ++ H V G L + L Sbjct: 532 LDKTNFYAESGGQIYDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLAVGDEVQL 591 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 HIDAERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVA 651 Query: 634 SIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 E D++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 KTEQLTRDMVYKNMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLEAQP 711 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 E G S CGGTH+ ++G IM I SE +I GIRRI A+TG A L + Sbjct: 712 DAEAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAF 771 Query: 742 LKSLASFL------KVSQG------NVVGRVEEI---------WEEYRKLQLIHAK---- 776 + ++ K + +V E+I +E R L K Sbjct: 772 QQEISKLQATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDD 831 Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 R L+ V + N + + ++ K L + + ++ ++ M Sbjct: 832 KERALRAAVSVTVVERAKALCEANPQANVLVQQLEAYNNTKALDAALKQVRSQLPDAAAM 891 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 V + + KK L V + +++ A + + + VL GG GGG+P AQ+ G N + Sbjct: 892 FVSVDADSKKIFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFER 950 Query: 885 ADQAIAGVASFLK 897 D+ + F + Sbjct: 951 VDEIVQLARKFAQ 963 >gi|209559623|ref|YP_002286095.1| alanyl-tRNA synthetase [Streptococcus pyogenes NZ131] gi|209540824|gb|ACI61400.1| Alanyl-tRNA synthetase [Streptococcus pyogenes NZ131] Length = 872 Score = 725 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|119716634|ref|YP_923599.1| alanyl-tRNA synthetase [Nocardioides sp. JS614] gi|205830163|sp|A1SJC7|SYA_NOCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119537295|gb|ABL81912.1| alanyl-tRNA synthetase [Nocardioides sp. JS614] Length = 896 Score = 725 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 332/926 (35%), Positives = 515/926 (55%), Gaps = 67/926 (7%) Query: 2 SNVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 + + IR F+ F+ N H +PS+SL+ +DP L+F N+GMVPFK F GQE P Sbjct: 1 MDTAEIRRRFVAHFEHNTTVGAHTPVPSASLL-LDDPNLLFVNAGMVPFKPYFLGQEAPP 59 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 Y T+VQKCVR D+++VG+T RH TFFEM GNFSFG YFKE AI+LAWDL+T+ Sbjct: 60 YPRATSVQKCVRT----PDIEDVGKTTRHGTFFEMCGNFSFGDYFKEGAIELAWDLVTRP 115 Query: 118 F-----DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 L++ +LY +VY++D EA LWKK++GL ++IIR+ +N+WSM GP GPC Sbjct: 116 LADGGWGLEESKLYPSVYEDDPEAVALWKKVTGLPEERIIRLGKRENYWSMGVPGPGGPC 175 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDT 226 SEI +D+G + +RY+EIWNLVFMQ E +++ LPK +IDT Sbjct: 176 SEILYDRGPDYGPDGDFGPKGEDRYLEIWNLVFMQDELSAVRSKEDFDIAGSLPKKNIDT 235 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLER+A +LQ K N Y+ID+ +IQ +E++TG +Y + ++ V RV+ DH+RSS Sbjct: 236 GMGLERVAFLLQGKANMYEIDVMFPVIQKAEELTGRRYGADHDDDVRFRVVADHVRSSMM 295 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P NE RGYVLRR++RRA+ RLLGY +P + L P +MG Y L + Sbjct: 296 LIGDGVTPGNEARGYVLRRLLRRAVRSMRLLGYEDPALPELFPISRDKMGETYTALHRDW 355 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402 I +E+ F +TL G + D + L + L+GD AF L+DT+G P+D+ Sbjct: 356 ERISTVAYAEEHAFRQTLRSGTTIFDQATAELKQAGGSQLSGDKAFALHDTYGFPIDLTL 415 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGY 460 ++ +GL +D + F + + EQR RA+ + + + + + G +F GY Sbjct: 416 EMAAEQGL-AVDEVGFRRLMNEQRQRAKDDAKAKKGQHRDASAYRQVADSLGRPVEFTGY 474 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D++ + V+ +V G +V A G VE++ D+TPF Sbjct: 475 DVVTD-----------------------EASVRGLVAAGGVVSSAGPGDDVEIILDRTPF 511 Query: 521 YAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 YAE GGQL D G D R+++ DVQ G+ VHHA V G + + +D + Sbjct: 512 YAEGGGQLADQGVIELDNGARVEVRDVQSPVRGLIVHHATVLSGEVSIGLGAHALVDVER 571 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR +S +H+ATH++H A LG +Q GS +P RFD + + + + +E V Sbjct: 572 RRSISRSHTATHMVHKAFREALGETATQAGSENSPGRFRFDFSAVGAVPESVMADVEARV 631 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+++ +L V +M++ DA+ SGA AL G KY DRVRVVSV G + LCGGTH Sbjct: 632 NEVVLDDLAVHAEVMSQADAVKSGAMALFGEKYGDRVRVVSV-----GDWARELCGGTHA 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 S+G++ ++ ++ ESSI +G+RR+EA+ G A L + + L+ LKV + R Sbjct: 687 GSSGKLGVVKLLGESSIGSGVRRVEALVGSDAYRFLAREHVLVAQLSDTLKVRPEQLPER 746 Query: 760 VEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 V ++ E+ R+ + + ++ K+ VN ++H +++++ Sbjct: 747 VHDLVEKLREAEKEIERVRVGQLLAAAGELAAGAAKVGPVNLVAHRADGAGGGDVRTLAL 806 Query: 815 ALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870 ++ ++ G+++++G + K +V+ + ++ R +A +L R ++GG G GG Sbjct: 807 DVRGRLPQGEPGVVVVIGAV-DGKVAVVAALNDEARARGLSANELVRAVGPLVGGKG-GG 864 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + +AQ GG + ++ D+AI V + + Sbjct: 865 KDDVAQGGGTDASRIDEAITLVTAEV 890 >gi|319744847|gb|EFV97185.1| alanine--tRNA ligase [Streptococcus agalactiae ATCC 13813] Length = 872 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGENMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKSEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTESVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L I+ + R + Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVSVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ + + K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA L Sbjct: 855 GSDASKIAELLAAVAENL 872 >gi|300725879|ref|ZP_07059342.1| alanine--tRNA ligase [Prevotella bryantii B14] gi|299776816|gb|EFI73363.1| alanine--tRNA ligase [Prevotella bryantii B14] Length = 888 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 312/937 (33%), Positives = 483/937 (51%), Gaps = 90/937 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L++F+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKYFESKGHVIVPSAPIVVKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+R GKHNDL+ VGR + HHT FEMLGN+SFG YFKE AI +A++ L Sbjct: 61 RADTQKCLRVSGKHNDLEEVGRDSALSHHTMFEMLGNWSFGDYFKEGAIDMAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ D+EA K W+K + I+ +DNFW M + GPCG Sbjct: 121 KLDPKDLYVTVFEGDEAENLERDDEAAKFWEK--HFPKNHIVNGNKHDNFWEMGDQGPCG 178 Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PC+EI D G +++ + IEIWN VFMQ+ ++ L IDT Sbjct: 179 PCTEIHIDFRSEEEKAKVPGEELVNKDHPKVIEIWNNVFMQYNRKADGTLEPLKMQVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPIIDEIERISGKKYNHTFPEGDNGEGINEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ Y L E M LLP L Sbjct: 299 IRVVADHLRAVAFAIADGQLPSNAKAGYVIRRILRRAVRYYYTFLDQKEAFMFKLLPTLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAF 388 EMG AYPEL + LI ++ E++ F +TL++G+ LL+G + L+G AF Sbjct: 359 AEMGGAYPELKAQQELIGRVMKEEEDSFLRTLEKGINLLNGDMETLKANGKTELDGASAF 418 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + I G +D FN+ + +Q++RAR + W + Sbjct: 419 RLFDTYGFPLDLTELICTENGYT-VDEKGFNEEMAKQKARARNA-----AAVENGDWQVI 472 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 KE G +F+GYD + R+V +K Sbjct: 473 KE--GEQEFVGYDYSEYPCHILRYRQVTQKKNTF-------------------------- 504 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + + +TD +++ V++ Sbjct: 505 --YELVLDHTPFYGEMGGQVGDCGTLVSENETVTVTDTKRENNQSIHI---VKKLPEDLN 559 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D R + NH+ATHLL +AL +LG HV Q GS + LRFD +H + +T Sbjct: 560 AEFMACVDLDKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDDKVLRFDFSHFQKVT 619 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 E++ +E VN +I Q+LP+ R E+A GA AL G KY D+VRVV Sbjct: 620 DEEIRQVERIVNAMIRQDLPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFGP---- 675 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S+ CGG H STG I I+SESS+ AG+RRIEA+TG+ L + L + S Sbjct: 676 --SAEFCGGIHAQSTGRIGFFKIISESSVAAGVRRIEALTGKACEETLYTLQDTLSDVKS 733 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIIS 802 + ++ +++ +E+ ++ K + Q+ N +I V + ++ Sbjct: 734 LFN-NAKDLHAVIQKYIDEHDAMKKEVEKFQAQMVERTKNDLVSKAQEINGVKVVKAVLP 792 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860 ++ K ++ +++ I ++ ++G + K + ++ ++D++ NA + R +A Sbjct: 793 -LEPNAAKDLVFKIREAIPENLVAVIGSTSNDKPMLSVMFSDDMVKNHDLNAGKMIREAA 851 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 K++ GG GGG+PH AQ+GG + A+ + Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDVEGIHAAVDKIIELAN 887 >gi|94994635|ref|YP_602733.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] gi|205830226|sp|Q1J5Z4|SYA_STRPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94548143|gb|ABF38189.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] Length = 872 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 321/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|94986300|ref|YP_605664.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300] gi|205830044|sp|Q1IW89|SYA_DEIGD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94556581|gb|ABF46495.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300] Length = 885 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 336/915 (36%), Positives = 490/915 (53%), Gaps = 61/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ--EKPVY-- 58 + IR FL FF+ GH LPS SLI DPT +FT +GM PFK F G + P Y Sbjct: 6 TTAEIREKFLSFFESKGHLRLPSHSLIAP-DPTTLFTVAGMQPFKPQFMGAPAKFPGYGE 64 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 + VTT QKC+R G D++NVGRT RH + FEM+GNFSFG YFK AI AW+ LT Sbjct: 65 NRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKREAILWAWEFLTSP 120 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCG 170 + +D R+Y+T+Y++D EAF W + GL D I R ++NFW GPCG Sbjct: 121 EWLGMDPARMYVTIYEDDNEAFGYWTQDVGLPEDHIHRFGADENFWPADAPAKGPNGPCG 180 Query: 171 PCSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI++D+G E R++E+WNLVF Q+++Q+ LP +IDTG Sbjct: 181 PCSEIYYDRGPHYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDGGVLADLPFKNIDTG 240 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287 MGLER+A+V+Q+ + Y D+F+ L++ +++G YEG V+HRV+ +H+RS + IA Sbjct: 241 MGLERVASVVQDVPDFYSNDVFRPLVEKVAELSGKPYEGEVSVSHRVVAEHIRSVAMTIA 300 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ +N GRGYV+R+I+RRA +A LLG EP + L+P + MG AYPEL+ + + Sbjct: 301 DGVALSNTGRGYVIRKILRRASRHAYLLGLHEPTLYRLVPLVVQAMGGAYPELVTEEARV 360 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +R+E+ERF KTL+ G+ L G+L + + +L G+ AF LYDT+G PLD+ ++I Sbjct: 361 TAAIRAEEERFLKTLESGMQRLSGLLEGMERGAVLPGEEAFLLYDTYGFPLDLTKEIAEE 420 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G ++ + ++LE + ARA S G E TQF+GYD L Sbjct: 421 YG-ISVNEAEYAESLERAQETARAAS-KYGKSELFGGSQEALEGLPPTQFVGYDELE--- 475 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 V A+V GE ++ ++G + VV +TPFYAE GG+ Sbjct: 476 --------------------AQGEVLALVGAGERLDHLMAGSEATVVLSRTPFYAEGGGE 515 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG +G R + D +K GI++H +VE G L +++ + + + + +H Sbjct: 516 VGDTGVLEWEGGRGLVRDTRKTPAGIWLHDVLVEEGELTPGVTVRGVVSSERQ-AIQRHH 574 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG V Q GS + P+ LRFD TH +T+ EL +E V+ + N Sbjct: 575 TATHLLHAALRAVLGPGVRQAGSLVAPERLRFDFTHGAALTADELGQVERLVSRWVTANF 634 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVSSTG 703 PV R M +A A+GA AL G KY D VRVV + + D V S LCGG HV+ TG Sbjct: 635 PVTWREMPLAEAKAAGATALFGEKYGDTVRVVRVEGGIPFGDATVTSMELCGGAHVTRTG 694 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I IVS+ ++ AG+RRIEA+ G+ A + + Q + ++ L S + RV + Sbjct: 695 DIGAFVIVSDENVAAGVRRIEALAGEAATAWVRAQLNNVHRVSGLLNTSPDTLETRVIGL 754 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + R Q A+ + QL + ++ +S ++ EL+ D L Sbjct: 755 QSQLRAAQQETAQARRQLAEAQMGGASTQQVRELGGFKVAVLRLSGIEGGELRGAADKLL 814 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + + + ++ K V+ + +A L A GG G GGRP MAQ+ Sbjct: 815 DQSGADLAVIAS----DKGLVVKASKTAVARGAHAGQLIGKLAAAGGGKG-GGRPDMAQA 869 Query: 878 GGPNGNKADQAIAGV 892 G N A A+ Sbjct: 870 GIGNPEAALAALDTA 884 >gi|194759416|ref|XP_001961945.1| GF14684 [Drosophila ananassae] gi|190615642|gb|EDV31166.1| GF14684 [Drosophila ananassae] Length = 966 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 307/973 (31%), Positives = 455/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKFLTAKEVRDAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW Sbjct: 61 EMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWQF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT+ L + RLY+T + + D E +LW + GL + I+ + DNFW M E Sbjct: 121 LTERLGLPKDRLYVTYFGGDKASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+QF +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L +A + G + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGTDDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQATIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSL-QIDMEGYEA----AKHNSYILSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E SGQK +V Sbjct: 474 E-QG-VAPTNDSFKYKYEAVSDERDSAYNYGECTSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELQLH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVAK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E+ +++ N+P+ + G ++ Y D VRV+S Sbjct: 652 TENLTKEMVYNNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEKTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776 + + LK + +V E+I +E R L K Sbjct: 772 QEIVK-LKATIDADTSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830 Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 R L+ V K D + + ++ K L + + ++ ++ + M Sbjct: 831 KERALRAAVSTTVVEKAKELCEKNPDAIVLVEQLEAFNNTKALDAALKQVRSQLPNAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 891 FFSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949 Query: 885 ADQAIAGVASFLK 897 D+ + F + Sbjct: 950 VDEIVELATKFAQ 962 >gi|71891957|ref|YP_277687.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|83305841|sp|Q493M6|SYA_BLOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71796063|gb|AAZ40814.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 879 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 356/897 (39%), Positives = 522/897 (58%), Gaps = 56/897 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 N+ IR FL FF+K GH+++ SS+LIP +D TL+FTNSGM FKNIF G +KP+++ V Sbjct: 3 KNIDDIRQEFLNFFKKKGHKIISSSTLIPNSDQTLLFTNSGMNQFKNIFLGIDKPLFKRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119 T Q+CVRAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK AIQ AW+LLT F+ Sbjct: 63 ATAQRCVRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKNEAIQFAWELLTDVNWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPC 172 L + +L++TV++ D E++ +W + + I++I +DNFW M GPCGPC Sbjct: 123 LSKNKLWVTVHNCDGESYDIWSNQIDIPNEHIVKIGSNTNDFCDSDNFWQMGNIGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D+G+ GG PGS EE GERY+EIWNLVF+QF++Q LP +S+DTGMGLE Sbjct: 183 SEIFYDRGDRFQGGPPGSLEEFGERYVEIWNLVFIQFDRQENGRLLSLPMLSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ ++LQ +N+ ID+FK LI + ++ + N + VI DH+R+ SFLI DG+L Sbjct: 243 RITSILQGVNSNFSIDVFKKLISSISRIMKINDIYIN-RSVYVIADHIRACSFLIQDGVL 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 PANEGRGYVLRRI+RRA+ + + LG + L+ L M L + K I E L Sbjct: 302 PANEGRGYVLRRIIRRAILHGKKLGVNDIFFYKLVSPLIKYMQHIADILHEKKDFIAEIL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 SE++ F TL RGL LL+ L L LNG++AF LYDT+G P ++ QD+ RG+ Sbjct: 362 LSEEKLFQDTLKRGLELLEKQLIRLK-GNCLNGEIAFNLYDTYGFPFELTQDVCLKRGIH 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+QA+ Q+ + + + + L ++ F+GYD L Sbjct: 421 -VDQEGFDQAMLTQKKYTKELNKF------DISYEKLSLCNVSSIFVGYDKL-------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V A+ Q + + + + ++ V+ + TPFY E+GGQ+GD Sbjct: 466 ---------------ICKSRVMALFQNNKSINKIYTKEEGIVILNNTPFYGESGGQIGDC 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G Q+++ +K + H IV G + +V +D R+ +S+NHSATH Sbjct: 511 GQLNTISGFFQVSNTKKYGQT-IGHLGIVNSGTISVGEEIVAQVDQHKRKCISLNHSATH 569 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL ALS +LGSHV+Q GS + LRFD H +T+ ++ ++E+ VN+ I +N P+ Sbjct: 570 LLRAALSQVLGSHVTQKGSLVNDRYLRFDFYHHATMTTTQMNTVENIVNEQIWKNAPITV 629 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M E A SGA L+ +Y+ +VRV+ + G S+ LCGGTH TGEI + I Sbjct: 630 DVMPIELARNSGAVILINKQYDKKVRVLKI-----GNFSTELCGGTHAEHTGEIGVFMIT 684 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E SI AGIRR+EA+T A S + LK++ + N++ ++ E Y+KL+ Sbjct: 685 KECSIAAGIRRVEAVTNNVALSAIHQYKMLLKNIFQSTQSDDKNILSKIHEFKCRYQKLE 744 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + Q ++ + I DV + + + SK L ++ D ++ +++SG+I+ Sbjct: 745 KEIDTLRNQQIIQQSLSFIKDVYYIKDVRILVKQVVNMTSKTLFNMTDCIKHQLKSGVIV 804 Query: 827 LVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L+ ++ KK ++++ VT+DL++ R NA+ L K+LGG G GGRP AQ+G N Sbjct: 805 LINLNTNKKINLVVAVTKDLIERNRINALSLVHYIIKILGGKG-GGRPDFAQAGINN 860 >gi|228477888|ref|ZP_04062502.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126] gi|228250378|gb|EEK09618.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126] Length = 872 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS +F I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L++L K + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F+ Y+ Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + IV + SGQ +VF+QTPFYAE G Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + V ++A H + G L + L ID+ R ++ Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHTRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H Q GS + LRFD TH + +T EL++IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + PV T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T E Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ LQ +A K + + V +++ + D+ L++ D ++ Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L EK ++ ++D +A +L ++ A ++ G GGG+P MA +G Sbjct: 800 ADYSDVLVLAAHIGEKVNVLVASKSKD----VHAGNLIKVLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + N ++ VA L Sbjct: 855 GSDANGIQDLLSAVAEQL 872 >gi|251782836|ref|YP_002997139.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391466|dbj|BAH81925.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 872 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 321/916 (35%), Positives = 494/916 (53%), Gaps = 68/916 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y ED++++ W + G+ +I + +NFW + GP GP +EIF Sbjct: 117 WFDFPKEKLYMTYYPEDKDSYNRWLAL-GVDPSHLIPL--EENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKDIFKLYDTYGFPVELTEEMA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++ F+ Y+ Sbjct: 413 EEAGYK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGITESSTFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T V + + I+ E E GQ +VFDQTPFYAE G Sbjct: 465 -------------------TETVDARLAVIIVDNERSEVVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + +KA H + L + L ID++ R + Sbjct: 505 GQVADRGVIKNANGDIVARVIDVQKAPNGQALHTVDVLASLALDTVYTLDIDHKRRYAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS + LRFD TH + +T EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + L + T + E A + GA AL G KY VRVV + G +S LCGGTH+++T E Sbjct: 625 KALAITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L I+ E I +G RRI A+TGQ+A Q++ LK +A LK Q V +V + Sbjct: 680 IGLFKILKEEGIGSGTRRILAVTGQQAFESFRKQEDALKEIAHTLKAPQMDQVPAKVVSL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R LQ +A+ K + ++ + +++ +S D+ L++ D ++ Sbjct: 740 SEQLRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ +++ +A ++ ++ A ++ G GGG+P MA +G Sbjct: 800 KDYSEVLVLVAAIGEKVNVLVASKSKE----VHAGNMIKVLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVAS 894 G + +K +A V Sbjct: 855 GSDASKISDLMAAVPE 870 >gi|308184987|ref|YP_003929120.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180] gi|308060907|gb|ADO02803.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180] Length = 847 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 321/892 (35%), Positives = 484/892 (54%), Gaps = 57/892 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + ++I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTE------------------- 455 Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + V + + EA Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 456 ----CLAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDNEEAA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A Sbjct: 570 LHVSQAGSLVESKRLRFDFSHPKALNDEELERVEDLVNAQIFKHLNSQVEHMPLNQAKDK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RR Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 DL K+ V+ + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 736 SMDLPIEKVHGVSLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVF-KKENERITLACGV 791 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + K A+ + Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839 >gi|227894659|ref|ZP_04012464.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047] gi|227863554|gb|EEJ70975.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047] Length = 879 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 324/920 (35%), Positives = 493/920 (53%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF+++AI AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDQAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +D + K+W+K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKDKLYCTVYPKDVASQKVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTPGKKYGVNKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LL ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLSLLADLIDKAKKSPDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S + + +L ++F Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSEF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------EYGVYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID + R L Sbjct: 506 QVADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEQLVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + G SS CGGTHV +T +I Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I SES++ AG+RRIEA+T ++A +L + L + +K N++ +++ + Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEDVKATKPDNIIDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + + Q ++N + D+ ++ I +L+ + D + Sbjct: 741 SDLHESQKQVEALNKKINQAKAGQIFDDVKQAGDLTVIATIADVNSMNDLRELADNWKSS 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + + KA+++I + + LDR A DL + +A + GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLAA-NNDGKANMIISLDKKALDRGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G + AI V + K Sbjct: 859 GKKPEGLNDAIKAVIDEISK 878 >gi|25010884|ref|NP_735279.1| alanyl-tRNA synthetase [Streptococcus agalactiae NEM316] gi|41018224|sp|Q8E600|SYA_STRA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|23095263|emb|CAD46473.1| Alanyl-tRNA synthetase [Streptococcus agalactiae NEM316] Length = 872 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ + + K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA L Sbjct: 855 GSDASKIAELLAAVAENL 872 >gi|170016825|ref|YP_001727744.1| alanyl-tRNA synthetase [Leuconostoc citreum KM20] gi|205830134|sp|B1MXP8|SYA_LEUCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169803682|gb|ACA82300.1| Alanyl-tRNA synthetase [Leuconostoc citreum KM20] Length = 894 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 323/930 (34%), Positives = 478/930 (51%), Gaps = 70/930 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S +R FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKELTSSEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFK I AW+LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSVGDYFKAEVIPWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD+ LY+TVY +D+EA K+W + + L I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDKDLLYVTVYPKDQEAKKIWLEKTDLPEGHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G E ERY+EIWN+VF QF + + LP +IDTG Sbjct: 174 FDRGPAFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282 MGLER+ +V Q N+D DLF +I+A+E++ Y+ + +VI DH+R+ Sbjct: 234 MGLERLVSVFQNGRTNFDTDLFLPIIRATEKMSPDYTYDATKDSESNTSFKVIADHIRAI 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I DG LPANEGRGYV+RR++RRA+ + + LG + L+P + M S YPE+ Sbjct: 294 TFAIGDGALPANEGRGYVIRRLLRRAVLHGQKLGIQGEFLTKLVPIVAEIMQSYYPEIAD 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400 I++T+ +E++RF TL GL LL+ V++ ++++G AFKL DT+G PL++ Sbjct: 354 NTEKIQKTIAAEEKRFNATLTGGLSLLNDVIAKAKASGQQVISGADAFKLSDTYGFPLEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q+ GL + + ++ A S G + LK + ++G+ Sbjct: 414 TQEQAADEGLTVDVVGFNDALQAQRTRARAARSNDKSMGVQNAVLTDLK---VPSDYVGW 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE----EAVSGQKVEVVFD 516 S ++IV I + V+ A G V++VFD Sbjct: 471 SETEVSN---------------------AAIVAIIGHDNQGVDALLANAEPGDSVQLVFD 509 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-AEGIFVHHAIVERGILRTEMSLVLTI 575 +TPFYAE GGQ+ D G + + + A H + + + L + Sbjct: 510 KTPFYAEMGGQVADQGEVLNKQGEVVARVTDTQSAPNGQHVHTVEVVTSFKLGDQVALKV 569 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 + +S NH+ATHLL L ++G V Q GS + P+ LRFD TH P++ L+ I Sbjct: 570 NLARHVAISKNHTATHLLDQTLRNVIGGDVHQAGSLVEPEYLRFDFTHEGPVSEQNLEKI 629 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN +IA NLP+ + E A GA A+ G KY D VRVVS+ G + G Sbjct: 630 ETMVNQVIANNLPITWVETDIESAKKMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDG 684 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754 GTH +T E+ L IVSES I AG+RRIEA+TG A S +++ LK +A LK + Sbjct: 685 GTHAQTTAELGLFKIVSESGIGAGVRRIEAVTGLAALSQFKAEEQALKVIADSLKAQKLT 744 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKEL 809 + +VE++ E + LQ + QL +++ + L Sbjct: 745 DAPAKVEDLQVEIKTLQRHLTSVEAQLANAAAQDVFKDVKTQNGYQYITAQLQVSGMDGL 804 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + V+D ++ S +++L + K S+++ + + + F A DL + A +GGGG Sbjct: 805 RQVVDTWRENYPSDVLVLA-THVDDKVSLIVAASPEANKKGFKAGDLIKAIAPKIGGGG- 862 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP MAQ+GG N + A + V++FL + Sbjct: 863 GGRPDMAQAGGKNPAGINDAFSAVSTFLDE 892 >gi|322391767|ref|ZP_08065232.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780] gi|321145247|gb|EFX40643.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780] Length = 872 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 327/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQIRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWVE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPDHIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +TL G G+++ L +++G FKLYDT+G P+++ ++I Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKAKGQSVIDGQDVFKLYDTYGFPVELTEEIA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ ID F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 413 EEAGMT-IDRDGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESHF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +SS + AIV VE G ++F +TPFYAE G Sbjct: 462 ----------------NYNASQLSSKLVAIVADNTEVEAVSEG-TASLIFAETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + + +KA H + L L ID R ++ Sbjct: 505 GQVADHGQILDAVGNVVANVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE VN+ I Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + + T + + A GA AL G KY VRVV++ G +S LCGGTHV++T E Sbjct: 625 EAIAIKTIETDIDTAKEMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVANTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG+ A Q++ LK A+ LK Q V +VE + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYRQQEDALKVAAAALKAPQLKEVPHKVEAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ ++LQ +A+ K + + +F++ +S D+ L++ D ++ Sbjct: 740 QEQVKQLQKENAELKEKAAAVAAGDVFKHVQEANGHSFIASQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNVVKELASIV-DGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G N K + + VA L Sbjct: 855 GSNQAKIQELLDAVADKL 872 >gi|22536974|ref|NP_687825.1| alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|76799299|ref|ZP_00781465.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21] gi|41018221|sp|Q8E0C4|SYA_STRA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|22533828|gb|AAM99697.1|AE014228_18 alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|76585342|gb|EAO61934.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21] Length = 872 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 321/918 (34%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L I+ + R + Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ + + K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA L Sbjct: 855 GSDASKIAELLAAVAENL 872 >gi|320528371|ref|ZP_08029533.1| alanyl-tRNA synthetase [Solobacterium moorei F0204] gi|320131285|gb|EFW23853.1| alanyl-tRNA synthetase [Solobacterium moorei F0204] Length = 900 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 314/915 (34%), Positives = 473/915 (51%), Gaps = 62/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R FL+FF G + P +SLIP NDPTL++ N+G+ K F G EKP + Sbjct: 29 SGNEVRQKFLDFFASKGCMIEPGASLIPHNDPTLLWINAGVSALKKYFDGSEKPASNRIC 88 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVGRT RHHTFFEMLGNFS G YFK+ AI AW+ LT + Sbjct: 89 NAQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKKEAITWAWEFLTSPEWIGF 144 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RLY+TVY +D+EA+ W G+ I R T DNFW + GP GP +E+++D+G Sbjct: 145 DPKRLYVTVYPDDDEAYNQWV-QVGMIPSHIRR--TEDNFWEIGR-GPGGPDTELYYDRG 200 Query: 181 ECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQ----ERFILPKMSIDTGMGLE 231 E E +RYIE+WN+VF Q++ + + E LP+ +IDTGMGLE Sbjct: 201 EKYDPEGIGEKLFFEDLENDRYIEVWNIVFSQYDCRPGEVDRHEYKELPQKNIDTGMGLE 260 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGI 290 R+ ++Q+ N+D DLF +I A+E+ Y + +RVI DH+R+ +F IADG Sbjct: 261 RLVCLIQDGETNFDTDLFLPIIHATEKYAKHSYSEKEYKMAYRVIADHIRTVTFAIADGA 320 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 + +NEGRGYVLRR++RRA+ Y LG M L+ + M S YP L + LIE+ Sbjct: 321 MFSNEGRGYVLRRVLRRAVRYGIKLGIDGAFMYKLVKVVADIMISYYPYLQEKISLIEKL 380 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+E F KTL G LL L+ +IL G+V FKLYDT+G P ++ +I G Sbjct: 381 VKQEEESFHKTLANGEALLQNALAEHADTKILPGEVMFKLYDTYGYPKELTTEIAEEEGY 440 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F++ ++ Q++RAR + S + L + ++F GY Sbjct: 441 R-VDSEGFDKEMQAQKTRAREARGNIQSMHGQSA--DLMDFTQESKFTGYTDTHSR---- 493 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 V + + G V+ + +++ D+T FYAE+GGQ D Sbjct: 494 -------------------GKVIGLFKDGVRVDTLT--DEGDIILDETCFYAESGGQCAD 532 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG D + +T+VQK +HH + G + L DY+ R++ NHS+ Sbjct: 533 TGVVWNDHFKANVTNVQKAPHKQPLHHIAIVEGTVSEGNVLEGEYDYEKRQRTRANHSSL 592 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG H++Q GS + RFD TH + T +L +E VN IA P+V Sbjct: 593 HLLQAALKKVLGDHIAQAGSYNCAEYGRFDFTHFEKPTEEQLNEVERLVNKQIALAQPIV 652 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M E A SGA AL KY D VRVVS+ G S CGGTH ++T ++ + I Sbjct: 653 TEVMAVEAAKNSGAIALFDEKYGDTVRVVSM-----GDFSKEFCGGTHANNTADLCVFKI 707 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRK 769 SE SI +GIRRI + T A +++ L A +K+ ++ + EE + Sbjct: 708 TSEESIGSGIRRITSETKFDAYKDFKDEEQYLLECAKLMKLQSWQGFKEKLVALQEENAQ 767 Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ + K + I ++ + + D+ LK+ + ++ K+ G Sbjct: 768 LRKDNDAHKQAELLSSADTAVQKAETINGLSCVLLSLDGFDTNSLKTYAENVRNKLVDGF 827 Query: 825 IMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + + + + K + + ++ + A D+ + +A+ L GG GGGRP MAQ+GG + + Sbjct: 828 VFV-SNTTDGKVTFVCASSKTAIAKGKKAGDIVKAAAQ-LTGGNGGGRPDMAQAGGKDTS 885 Query: 884 KADQAIAGVASFLKK 898 K +A + V L + Sbjct: 886 KVQEAHSLVREILAQ 900 >gi|323352646|ref|ZP_08087616.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66] gi|322121682|gb|EFX93428.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66] Length = 872 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 321/915 (35%), Positives = 487/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G FKLYDT+G P+++ ++I Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA ++ GS + +L+ + F Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + S + AIV VE G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGKLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQEANGHRFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|86741900|ref|YP_482300.1| alanyl-tRNA synthetase [Frankia sp. CcI3] gi|123750882|sp|Q2J821|SYA_FRASC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86568762|gb|ABD12571.1| alanyl-tRNA synthetase [Frankia sp. CcI3] Length = 881 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 320/915 (34%), Positives = 481/915 (52%), Gaps = 56/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR+ FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + Sbjct: 1 MDTAEIRSRFLNHFARRGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQKCVR D++NVG T RH +FF+M GNFSFG YFK AI A++LLT+ F Sbjct: 60 ASVQKCVRTV----DIENVGHTARHASFFQMCGNFSFGDYFKAEAIPFAFELLTEGFGFK 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+ TVY +D+EA +W+K+ L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 116 ADDLWATVYLDDDEAEGIWRKL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGC 173 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236 G G + ERY+E+WNLVFMQ+E+ LP +IDTGMGLERMAT+ Sbjct: 174 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPIERELPARNIDTGMGLERMATI 232 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ A+ ++TG +Y + + V RVI DH R+++ LI+DG++P+N Sbjct: 233 LQGVDNLYEIDISRPVLDAAGRLTGRRYGADPADDVRLRVIADHTRTAAMLISDGVVPSN 292 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M L + + MG+ YPEL+ I +E Sbjct: 293 EGRGYVLRRMLRRAIRNARLLGAHEPVMSELFAVVGSAMGTIYPELLDNAETITGVAVAE 352 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++ F +TL G + D L G+ AFKL+DT+G P+D+ ++ GL+ Sbjct: 353 EQAFAETLRTGTTIFDTAARQARSLGSTTLGGEAAFKLHDTYGFPIDLTLEMAAEAGLS- 411 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + ++ QR A+A G + + + + G T F GY+ L + + Sbjct: 412 VDEAGFRRLMDRQRQAAKADRAARRIGNVDLSAFRPILARSGPTTFTGYEELSRTSGVVG 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V VV D TPFYAE+GGQ D Sbjct: 472 LVGIADGAGLAAAGEDTE---------------------VGVVLDATPFYAESGGQEPDL 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G DG +++ DVQ+ + +H V G LR + + +D RR +S +H+ATH Sbjct: 511 GRLRFDGGEVEVLDVQRPVPDLVLHRVRVLGGELRLGVEVFAEVDADRRRAVSRSHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H A LG +Q GS +P LRFD + + L +ED +N++ ++LPV Sbjct: 571 LVHTAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLADVEDEINEVALRDLPVRA 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +E+A GA AL G KY D VRVV D G ++ LCGGTHV+S+ ++ + ++ Sbjct: 631 FVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVKLL 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+SI AG RR+E + G A +L + + L++ LK +V RV +I R + Sbjct: 686 SEASISAGTRRVEGLVGLDAFRYLAREHLLVSQLSTALKARPDELVDRVTDIVGRLRDAE 745 Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII 825 + + ++A V ++ + +++ + ++ ++ Sbjct: 746 RELERLRAAAVLAGAGALAEGAEEVAGVAVVTAEVPAGTAPDDVRLLALDVRGRLAGRPA 805 Query: 826 MLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ + S ++VVT+D A DL R S L GG GGG+P +AQ GG N Sbjct: 806 VVAVAKADG--SSIVVVTDDAARGRGLRAGDLVRQSWASL-GGKGGGKPDVAQGGGGNPQ 862 Query: 884 KADQAIAGVASFLKK 898 A + + + Sbjct: 863 LVPAVFARLRGLVAE 877 >gi|120403625|ref|YP_953454.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] gi|205830159|sp|A1T8E8|SYA_MYCVP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119956443|gb|ABM13448.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] Length = 898 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 307/914 (33%), Positives = 461/914 (50%), Gaps = 70/914 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P + Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT Sbjct: 60 ASVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVEAG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL+ TVY +D+EA W++++GL ++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGFDPERLWATVYLDDDEAIGYWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G + E RYIEIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL + I + Y + V +R+I DH R+++ +I Sbjct: 235 ERVACLLQGVDNVYETDLLRPAIDLVAGIAPRGYGQGVHEDDVRYRIIADHSRTAAIIIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGYVLRR++RR + A+LLG +P+M L+ + M +YPEL I Sbjct: 295 DGVSPGNEGRGYVLRRLLRRIIRAAKLLGVDDPIMAELMATVRDAMSPSYPELAADFDRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E+ F +TL G L D + E L+G AF L+DT+G P+++ ++ Sbjct: 355 QRIAVAEETAFNRTLASGSKLFDDAARATKASGAEKLSGRDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 L+ +D F + EQR RA+A + + + G T+F G+D L Sbjct: 415 AEADLS-VDEEGFRALMAEQRQRAKADAAARKQAHADLSAYRELVDAGPTEFTGFDELSS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA------VSGQKVEVVFDQTP 519 + + I G+ V + ++VE++ D++P Sbjct: 474 -----------------------EARILGIFVDGKRVPVVAHTGREGAQERVELILDRSP 510 Query: 520 FYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE+GGQ+ D G G + + +TDVQK A+ ++ H VE G ++V + Sbjct: 511 FYAESGGQIADEGTVTGTGASETAKAAVTDVQKIAKTLWAHRINVESGEFVEGDTVVAAV 570 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + R + HS TH++H AL +LG + Q GS P LRFD +T + I Sbjct: 571 DPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRSQI 630 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E+ N + + V + + A A GA AL G Y D VRVV + GG S LCG Sbjct: 631 EEVTNQAVEADFEVHSFTTELDKAKAMGAMALFGENYPDEVRVVEI----GGPFSLELCG 686 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV S+ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV Sbjct: 687 GTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEE 746 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKEL 809 V RV + E+ R + + +L +I DV ++ ++ + +L Sbjct: 747 VPARVATLVEKLRAAEKELDRLRLAGARSAAVNAAAGAEQIGDVRLVAQRMAGGISGADL 806 Query: 810 KSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866 +S++ ++ K+ S ++ L+ ++ V DR A +L ++ + G Sbjct: 807 RSLVGEIRGKLGSDPAVVALIAEGDNDSVPFVVAVNPAAQDRGVRADELVKVMGAAVN-G 865 Query: 867 GGGGRPHMAQSGGP 880 GGG+ +AQ G Sbjct: 866 RGGGKADLAQGSGK 879 >gi|312977883|ref|ZP_07789629.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05] gi|310895190|gb|EFQ44258.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05] Length = 879 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 322/919 (35%), Positives = 487/919 (52%), Gaps = 62/919 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T K G N ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ + Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL +D + R L Sbjct: 506 QVADHGDIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV +T +I Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I SES++ AG+RRIEA+T ++A +L + + L + +K N+V +++ + Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q ++N + D+ ++ +L+ + D + Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L + K ++ + + L A +L +++A + GGGG GGRP+MAQ+GG Sbjct: 801 NKSDVLVLAAENAGKANMIIALDQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFLKK 898 N + AI V + K Sbjct: 860 KNPAGLNDAIKAVIDEISK 878 >gi|78187794|ref|YP_375837.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273] gi|123582508|sp|Q3B1I7|SYA_PELLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78167696|gb|ABB24794.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273] Length = 887 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 331/913 (36%), Positives = 491/913 (53%), Gaps = 67/913 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FL+FF H ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 1 MHSREIRQSFLDFFAAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRPYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+KE AI AW+LLT+ + L Sbjct: 61 ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTEVWKLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY TVY +D+E+ ++W + + + I+R DNFW M ETGPCGPCSEI D Sbjct: 121 ADRLYATVYHDDDESARIWAEKTSIEPSHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + R IE+WNLVF+Q+++Q LP+ +DTGMG ER+ V+Q K Sbjct: 181 D-GSGKELVNAGDHRAIELWNLVFIQYDRQPDGRLEPLPQRHVDTGMGFERVCAVMQSKA 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F L Q ++TG+ Y +G + RVI DH R+ +F ++DG +P+NEGR Sbjct: 240 SNYDTDVFLPLFQRLSELTGVTYGASMDGRQDIAMRVIADHARTLTFALSDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y+R LG + P++ L+ L MG + EL + +E +R+E+E Sbjct: 300 GYVLRRILRRALRYSRDLGCSGPILHQLVGTLADSMGDVFGELRDRRDAVERIIRAEEES 359 Query: 358 FGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + + +L G+ AFKLYDT+G P D+ + + GL +D Sbjct: 360 FITTLDRGMEIFGELAAATARAGGRMLKGEDAFKLYDTYGFPFDLTRLLATEAGL-DVDG 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F ++EQ+SRAR+ + AT F+GYD L + Sbjct: 419 EGFEHCMQEQKSRARSDRREKQQTGDGAGSWQWFSDSHATTFLGYDRLAMPSTI------ 472 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + A + + +V +TPFYAE+GGQ GD G Sbjct: 473 --------------------------IGAAHASGHLLLVLAETPFYAESGGQTGDRGWLE 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-----------MSLVLTIDYQNRRQLS 584 R+Q+TD +K + + + TE + +++ R++ Sbjct: 507 SAAYRMQVTDTRKDGDSFVHVVSRAFDKVRDTEIDPMDIVIEEATPVDASVERILRQETE 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILGSHV Q GS +T + LRFD +H +T E++++E VN+ I Sbjct: 567 RNHTATHLLHAALRRILGSHVQQKGSFVTSERLRFDFSHFSKMTPEEIQAVEAEVNEHIR 626 Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 V + ++AIA GA A G KY +RVR+V V LCGGTHV + G Sbjct: 627 CAAHVSKHADLPYDEAIAKGALAFFGDKYAERVRMVEVPGISA-----ELCGGTHVDNIG 681 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762 +I + I+SESS AGIRRIEA+TG+ A L + +L+ + LK+ V ++ E Sbjct: 682 QIGIFKIISESSAAAGIRRIEALTGRAAEMLLWKEYHELQDVRQQLKLKADEAVAEKLAE 741 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE ++L+ A K ++ L S +I ++ ++ VD+ L+S AL+ Sbjct: 742 LQEEKKELEKELAGLKSASVIDALVRDATSAEEIGGCRIVTKVLEGVDADTLRSAAMALR 801 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +K+ +L I+ + K S+ ++ + +A L RL+A + GGG GGR +A Sbjct: 802 EKLPVSAGLLCSIA-DGKVSLAAFSSDVAVKEKGIDAGKLIRLAAAAVKGGG-GGRAELA 859 Query: 876 QSGGPNGNKADQA 888 +GG N + +A Sbjct: 860 TAGGKNPDGVAEA 872 >gi|298735738|ref|YP_003728263.1| alanyl-tRNA synthetase [Helicobacter pylori B8] gi|298354927|emb|CBI65799.1| alanyl-tRNA synthetase [Helicobacter pylori B8] Length = 847 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 325/892 (36%), Positives = 485/892 (54%), Gaps = 57/892 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F ++ Sbjct: 359 SGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTE------------------- 455 Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + V + + EA Q+V V+ ++TPFYAE GG +GD G D Sbjct: 456 ----CPAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEAA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RR Sbjct: 630 GALALFSEKYAENVRVVSFKE-----VSIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 DL KI V+ + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 736 SMDLPIEKIHGVSLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + K A+ + Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839 >gi|195115683|ref|XP_002002386.1| GI12987 [Drosophila mojavensis] gi|193912961|gb|EDW11828.1| GI12987 [Drosophila mojavensis] Length = 967 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 302/974 (31%), Positives = 458/974 (47%), Gaps = 88/974 (9%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKFLTAKEVRDAYLNFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT +L + RLY+T + + D E ++W + GL + I+ + DNFW M E Sbjct: 121 LTDRLNLPKDRLYVTYFGGDAANGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + G + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVTTVVELLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTH 394 A+PE+ + I + + E+++F KTL RG LL+ + L + + GDVA++LYDT+ Sbjct: 359 AFPEVKKDPQHIMDIINEEEQQFLKTLSRGRNLLNRTIEKLGADQKTIPGDVAWRLYDTY 418 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ Q + + L ID+ ++ + + S G G+ ++I + Sbjct: 419 GFPVDLTQLMAEEKSL-QIDMDGYDA----AKHNSYILSQGKGASKIDEINLDVHAISEL 473 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + G F ++ + +S + A+ + + V+E SGQK +V Sbjct: 474 QE-KG-VPPTNDSFKYIYEAESNERDSAYKFSDCTSKIVALRYENKFVQEITSGQKAGIV 531 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE+GGQ+ D G + + G ++ H V G L + L Sbjct: 532 LDKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLAVGDEVQL 591 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 HIDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVA 651 Query: 634 SIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 E D++ + +P+ + G ++ Y D VRV+S Sbjct: 652 KTEQLTRDMVYKEMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLESQP 711 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 E G S CGGTH+ ++G IM I SE +I GIRRI A+TG A L + Sbjct: 712 DSEAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEGF 771 Query: 742 LKSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK--- 776 K ++ LK + +V E+I +E R L K Sbjct: 772 EKEIS-TLKATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLD 830 Query: 777 ---RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGII 825 R L+ V + N + + ++ K L + + ++ ++ Sbjct: 831 DKERALRAAVSVTVVEQAKALCEANPKANVLVQQLEAYNNTKALDAALKQVRSQLPDAAA 890 Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 M V + + KK L V + +++ A + + + VL GG GGG+P AQ+ G N Sbjct: 891 MFVSVDADSKKVFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFE 949 Query: 884 KADQAIAGVASFLK 897 + D+ + + F + Sbjct: 950 RVDEIVQLASKFAQ 963 >gi|171779579|ref|ZP_02920535.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281681|gb|EDT47115.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 872 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 324/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ +R E+E F +T+D G +LD +L+ L + + G FKLYDT+G P+++ +++ Sbjct: 353 EKIVRREEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ID F A++EQ+ RARA + GS + +L + F Sbjct: 413 EDKGFK-IDHAGFEAAMKEQQERARASVVKGGSMGMQN--ETLSSITEESVF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ E E GQ +VF +TPFYAE G Sbjct: 462 ----------------SYEEEVLESTLSVIIADKERTEAVSEGQ-ALLVFAKTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + + +KA H + L + L ID + R + Sbjct: 505 GQVADHGVIKNDKGDIVARVIDVQKAPNGQALHTVEVLASLSVGTTYTLEIDAKRRHSVI 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHHVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PV+T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T E Sbjct: 625 NAIPVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+TG+ A ++E LK++A LKV Q V +V + Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ KLQ +A+ K + + + F++ ++ D+ L++ D ++ Sbjct: 740 QEQLHKLQKENAELKEKAAAAQAGNVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L EK ++ ++D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + K +A VA L Sbjct: 855 GSDAAKIADLLAAVAENL 872 >gi|317014630|gb|ADU82066.1| alanyl-tRNA synthetase [Helicobacter pylori Gambia94/24] Length = 847 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 326/892 (36%), Positives = 489/892 (54%), Gaps = 57/892 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKFVSV--DRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L+ ++TG+ Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMAEISELTGLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFENCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTE------------------- 455 Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S+ V + + EA Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 456 ----CSAKVLGFFDSDFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDDEEAA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RFEIAKHHSATHLLQSALREVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A + Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKSR 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY + VRVVS + S LCGG HV +TG I I+ ES + +G+RR Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGVHVENTGLIGGFRILKESGVSSGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G+ + ++LK+ LK + +V+ + ++ E + Q Sbjct: 685 IEAVCGKAFYQLAKEESKELKNAKILLKNN--DVIAGINKLKESVKNSQK-------APV 735 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 DL KI V+ + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 736 SMDLPVEKIHGVSLVVGVVEQGD---IKEMIDRLKNKHERLLAMVF-KKENERINLACGV 791 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + K A+ + Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839 >gi|290580864|ref|YP_003485256.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025] gi|254997763|dbj|BAH88364.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025] Length = 872 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 323/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ H + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FDL + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIE-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE G E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG EP + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L+ L + L G F+LYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA+ + GS + +L + F Sbjct: 413 EDAGFK-IDHQGFQAAMKEQQERARANVVKGGSMGMQN--ETLSNITEKSTF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ E +E GQ V +VF +TPFYAE G Sbjct: 462 ----------------NYEKEALDSSLSVIIADNERIEAVSEGQ-VLLVFSETPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + G L + L ID++ R ++ Sbjct: 505 GQVADHGLIKNDKGDTVARVTDVQKAPNGQALHTVDVLGSLSVGTTYHLEIDHERRNRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G+H +Q GS + LRFD TH + +T EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + +PV T + + A GA AL G KY VRVVS+ G +S LCGGTH+ +T E Sbjct: 625 KAIPVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LK +A+ LK Q V +V + Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIAATLKAPQMNQVANKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ KLQ +A+ K + ++ + +++ + D+ L++ D ++ Sbjct: 740 QDQLHKLQKENAELKEKAAAATAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV + KK +VL+ +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLV-TNIGKKVNVLVASK---SKDIHAGNLIKTLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + + IA VA L Sbjct: 855 GSDASAIKDLIAAVAENL 872 >gi|312277863|gb|ADQ62520.1| Alanyl-tRNA synthetase AlaS [Streptococcus thermophilus ND03] Length = 872 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 322/916 (35%), Positives = 493/916 (53%), Gaps = 68/916 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FDL + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A ++Q N++ DLF +I+ E+++G Y+ + ++ +VI DH+RS +F I Sbjct: 233 GLERLAAIMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L++L K + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F+ Y+ Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + IV + SG K +VF+QTPFYAE G Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSG-KALLVFEQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + ++A H + G L + L ID+ R ++ Sbjct: 505 GQVADHGTISDAAGTTVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHSRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G+H Q GS + LRFD TH + +T EL++IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + PV T + + A + GA AL G KY RVRVVS+ G +S LCGGTHV++T E Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LKS+A+ LK Q V +V + Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ LQ +A K + + V +++ + + L++ D ++ Sbjct: 740 QEQLHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSAAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L +EK ++ +E+ +A +L ++ A ++ G GGG+P MA +G Sbjct: 800 ADYSDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVAS 894 G + N ++ VA Sbjct: 855 GSDANSIQDLLSAVAE 870 >gi|77408860|ref|ZP_00785587.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1] gi|77172546|gb|EAO75688.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1] Length = 872 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFXVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDATAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ + + K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA L Sbjct: 855 GSDASKIAELLAAVAENL 872 >gi|116617672|ref|YP_818043.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272127|sp|Q03YQ2|SYA_LEUMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116096519|gb|ABJ61670.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 319/928 (34%), Positives = 481/928 (51%), Gaps = 70/928 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKDLSSAEIRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFKE+AI AW+LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +LY+TVY +D+EA K+W++ + L I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G E ERY+EIWNLVF QF + + LP +IDTG Sbjct: 174 FDRGSSFQDLPDDDPEMYPGGENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282 MGLER+ +V Q N+D DLF +I+A+E++ Y+ + + +VI DH+R+ Sbjct: 234 MGLERVVSVFQNGRTNFDTDLFLPIIRATEKLSNQFTYDDSQDSEVNTSFKVIADHIRAI 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I DG LP+NEGRGYV+RR++RRA+ + + LG + +L+P + M S YPE+ Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEVKA 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400 I++T+ +E++RF TL GL LL+ V+ K ++G AFKL DT+G PL++ Sbjct: 354 NTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGADAFKLSDTYGFPLEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q+ GL ++ ++ A S G + L+ ++++G+ Sbjct: 414 TQEQAEDAGLTVDVDRYNDELQAQRVRARAARSNTKSMGVQNAVLTDLRVD---SKYVGW 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVF 515 + + + AI+ + E +++ A V+V F Sbjct: 471 SQTEVNH----------------------AEIVAIIGEDEQGVDALLDNADVDATVQVAF 508 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574 D TPFYAE GGQ+ D G + + + A H + + L Sbjct: 509 DVTPFYAEMGGQVPDFGDVLNTNGDVIAHVTDVQTAPNGQHIHTVDVISSFTLGDKVDLK 568 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D +S NH+ATH+L +L +LG V Q GS + P+ LRFD + P++S +L Sbjct: 569 VDMARHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE +N IA+NLPV + E A GA A+ G KY D+VRVVS+ G + Sbjct: 629 IESMMNQEIAKNLPVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753 GGTH +ST E+ L IVSES I AG+RRIEA+TG +A S Q++ LK +A+ LK + Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKE 808 + +V ++ + R +Q + +L + +++ + Sbjct: 744 TDAPEKVYDLQADLRTVQRHAESLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGMDG 803 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 L+ V D ++ S +++L ++ EK + ++ + A +L + A +GGGG Sbjct: 804 LRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHIGGGG- 862 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGRP MAQ+GG A A V++FL Sbjct: 863 GGRPDMAQAGGKKPAGIPDAFAAVSAFL 890 >gi|325109123|ref|YP_004270191.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305] gi|324969391|gb|ADY60169.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305] Length = 869 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 321/915 (35%), Positives = 486/915 (53%), Gaps = 73/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R +L FF++ G PS L+P NDPT++FT +GM FKN F G K + Sbjct: 1 MKTDELRDAYLSFFEEKGCIRRPSDVLVP-NDPTVLFTPAGMNQFKNEFLGIGKLEFTKA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+R G D+ NVG T HHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 60 TTCQKCLRTG----DIGNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLG 115 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSE 174 LD RL +TVY +D+EAF +W+ GL ++I R +NFW G CGPCSE Sbjct: 116 LDGERLTVTVYLDDDEAFGIWENEIGLPKNRIKREDEYENFWPAGAPTEGPDGVCGPCSE 175 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232 I++ G + +EIWNLVF QF + LP +IDTGMGLER Sbjct: 176 IYYH------------PPTGGKEVEIWNLVFTQFNRVGNPPDNLKPLPMKNIDTGMGLER 223 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 A VLQ +N++ID K L + V G+KY + R I DH+R+ + + + + Sbjct: 224 TAAVLQGVESNFEIDTLKPLCETVGDVLGVKYNFGGEHGRAMRRIADHVRAVTMCVHENV 283 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP N+ +GYV+R+++RRA+ + L+G EP++ L+P + +G YPEL + ++ Sbjct: 284 LPDNKEQGYVVRQLLRRAVLESYLIGKQEPVLHLLVPKVVELLGKPYPELKETVGSVQSA 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F T++RGL + L I++G AF+L+ T G ++ + L Sbjct: 344 IQEEENAFLDTIERGLNRFERCLDGAKSSGIISGKDAFQLHTTDGFLYELTDALAARHNL 403 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D I F++ +EE + A S E ++++ G T+F+GY+ Sbjct: 404 K-VDRIGFDKLMEEHGIISNAG--KQKSVMAEGPLDAIRKTSGGTEFLGYEAT------- 453 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG---QKVEVVFDQTPFYAEAGGQ 527 V I+ + ++V+E + VV D+TPFYAE+GGQ Sbjct: 454 ----------------SAEGKVVGIIAEKQLVDEVTEVGHRDVIAVVIDRTPFYAESGGQ 497 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G DGI + D QK + +++H +++G L +L +D + R + H Sbjct: 498 VGDIGSLTADGIEFVVQDTQKDGD-LWLHIGHLKQGKLEVGQTLTAEVDGERRDAIRRAH 556 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+HHAL LG + +Q GS + D LRFD H KP++ EL+ IED VN IA Sbjct: 557 SATHLMHHALRETLGENATQRGSKVQQDELRFDFAHKKPVSPEELRRIEDMVNSHIANGN 616 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T +M EDA A GA AL G KY D VRVVS+ G +S LCGGTH+S+TG++ + Sbjct: 617 DVATDLMKIEDARAKGAMALFGEKYPDLVRVVSM-----GDYSIELCGGTHLSNTGQVGV 671 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766 I++E + G+RR+ A TG++A ++E L+ L LKVS +++ +V+ + E Sbjct: 672 FKIIAEEPVAKGVRRLVAYTGEKAIEESRKKEELLRELMLELKVSAPEDLIRKVQSLQAE 731 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + + + + Q +++ + K+ DV ++ VD L+ D L+ K + Sbjct: 732 LKDTKKKLSDQMRQSVGDEVDTLLQNAEKVGDVAVITFQPENVDKDVLRDYADRLRTKQK 791 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +L+ + K ++L V++DL+ NA D + +AK++ GG GGGRP +A++GG Sbjct: 792 --AAVLLAAEIDGKVALLAAVSKDLVKQGVNASDCVKAAAKLVKGG-GGGRPDLAEAGGK 848 Query: 881 NGNKADQAIAGVASF 895 + +K +A+ A F Sbjct: 849 DPSKISEALKAGAEF 863 >gi|108563608|ref|YP_627924.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1] gi|122386244|sp|Q1CS22|SYA_HELPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|107837381|gb|ABF85250.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1] Length = 847 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 328/891 (36%), Positives = 483/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG P T+ Sbjct: 2 DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPHPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + ++ Y +F+GY+ Sbjct: 418 EQVKRSKASWKGKQDNA---DFSAILNAYAPNEFVGYETTECPAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G D I Sbjct: 467 --------------DFKEIIEANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFGEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ + ++LK+ + LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + A+ + Sbjct: 793 NAP---IKANVWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839 >gi|320546404|ref|ZP_08040719.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812] gi|320448789|gb|EFW89517.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812] Length = 891 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 323/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 20 MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 79 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT + Sbjct: 80 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPE 135 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIF Sbjct: 136 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 191 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 192 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 251 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 252 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 311 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 312 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFI 371 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L+ L + + G FKLYDT+G P+++ +++ Sbjct: 372 EKIVKREEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 431 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ID F A++EQ+ RARA + GS + + +L + F Sbjct: 432 EDKGFK-IDHAGFEAAMKEQQERARASVVKGGSMSMQN--ETLSNITEESVF-------- 480 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ E E GQ +VF +TPFYAE G Sbjct: 481 ----------------SYEEEVLDSTLSVIIADNECTEAVSEGQ-ALLVFAKTPFYAEMG 523 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L ID + R + Sbjct: 524 GQVADHGVIKNDKGDIVARVTDVQKAPNGQALHTVEVLASLSVGTTYTLEIDSKRRHSVI 583 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 584 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIW 643 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PV+T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T E Sbjct: 644 NAIPVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 698 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+TG+ A ++E LK++A LKV Q V +V + Sbjct: 699 IGIFKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSL 758 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ KLQ +A+ K + + + F++ ++ D+ L++ D ++ Sbjct: 759 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQ 818 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L EK ++ ++D +A +L + A ++ G GGG+P MA +G Sbjct: 819 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKTLAPIVS-GRGGGKPDMAMAG 873 Query: 879 GPNGNKADQAIAGVASFL 896 G + K +A VA L Sbjct: 874 GSDAAKIADLLAAVAENL 891 >gi|77410746|ref|ZP_00787105.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111] gi|77163282|gb|EAO74234.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111] Length = 872 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 318/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + I+ E E GQ +VF QTPFYAE G Sbjct: 462 ----------------DYGADSLESNLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L I+ + R + Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ + + K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA L Sbjct: 855 GSDASKIAELLAAVAENL 872 >gi|288904885|ref|YP_003430107.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34] gi|288731611|emb|CBI13166.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34] Length = 872 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 323/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L+ L + + G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ID F A++EQ+ RARA+ + GS + +L + F Y+ Sbjct: 413 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ E E GQ +VF +TPFYAE G Sbjct: 466 --------------------EVLDSTLSVIIADNERTEAVSEGQ-ALLVFAKTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L ID + R ++ Sbjct: 505 GQVADHGVIKNDKGDIVARVTDVQKAPNGQALHTVDVLSSLSVGTTYTLEIDSKRRHRVI 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T E Sbjct: 625 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ KLQ +A+ K + + V +++ ++ D+ L++ D ++ Sbjct: 740 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L EK ++ ++D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + K +A VA L Sbjct: 855 GSDAAKIADLLAAVAENL 872 >gi|306830937|ref|ZP_07464099.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426960|gb|EFM30070.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 888 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 17 MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 76 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT + Sbjct: 77 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 132 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIF Sbjct: 133 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 188 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 189 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 248 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 249 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 308 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 309 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFI 368 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L+ L + + G FKLYDT+G P+++ +++ Sbjct: 369 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 428 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ID F A++EQ+ RARA+ + GS + +L + F Y+ Sbjct: 429 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 481 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ + E GQ +VF +TPFYAE G Sbjct: 482 --------------------EVLDSTLSVIIADNKRTEAVSEGQ-ALLVFAKTPFYAEMG 520 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L ID + R ++ Sbjct: 521 GQVADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDVLASLSVGTTYTLEIDSKRRHRVI 580 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 581 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 640 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T E Sbjct: 641 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 695 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + Sbjct: 696 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 755 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ KLQ +A+ K + + V +++ ++ D+ L++ D ++ Sbjct: 756 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 815 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L EK ++ ++D +A +L + A ++ G GGG+P MA +G Sbjct: 816 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 870 Query: 879 GPNGNKADQAIAGVASFL 896 G + K +A VA L Sbjct: 871 GSDAAKIADLLAAVAENL 888 >gi|296270020|ref|YP_003652652.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833] gi|296092807|gb|ADG88759.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833] Length = 889 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 322/921 (34%), Positives = 491/921 (53%), Gaps = 63/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL FF++NGH ++PS+SL+ DPTL+ N+GMVPFK F GQ+KP ++ Sbjct: 1 MESAEIARRFLRFFEENGHTVVPSASLVAE-DPTLLLVNAGMVPFKPYFLGQQKPPFRRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH +FF+MLGNFSFG YFKE AI AW+LLT+ Sbjct: 60 TSLQKCVRTL----DIDEVGKTPRHASFFQMLGNFSFGDYFKEGAIPFAWELLTRPVSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + RL++TVY +D+EA ++W+K G+ A++I R DN+W M GP GPCSEI+ Sbjct: 116 GFGFPEDRLWVTVYLDDDEAQEIWRK-VGVPAERIQRRGLADNYWHMGVPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + RY+E+WNLVFMQ + + + LP +IDTGMGL Sbjct: 175 YDRGPQY-GREGGPIADENRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ERMA +LQ N Y+ID +I+ + ++T +Y + + RV+ DH+R+ L+ D Sbjct: 234 ERMAAILQGVDNIYEIDTTSKIIKRAAELTETRYGRDERSDICLRVVADHMRAGVMLVGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP-ALCTEMGSAYPELIQAKLLI 347 G+LP+NEGRGYVLRR++RR + RLLG E M L M YPEL + I Sbjct: 294 GVLPSNEGRGYVLRRMLRRTIRNLRLLGAGEERYMRELTATTIEAMSGLYPELKTEEARI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E+ F TL G + D ++ + +L+G+ AF+L+DT+G P+D+ ++ Sbjct: 354 HTVIEAEEASFLGTLRTGTAIFDAAVAETKRKGGTVLSGEQAFQLHDTYGFPIDLTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLR 464 +GL +D F + ++EQR RA+A + +G + FS + EK G F+GYD Sbjct: 414 AEQGLK-VDEEGFRRLMQEQRERAKADAKAKKTGHADISVFSGILEKAGKIDFVGYDRT- 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V ++ G V A G +E+V D+TPFYAE Sbjct: 472 ----------------------TAEATVVGLIVNGVSVPAAGEGTSLEIVLDRTPFYAEG 509 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQL D G G +++ DVQ +G+ VH V G + ID + RR +S Sbjct: 510 GGQLADQGVIRTSGAEIEVLDVQSPIDGLIVHRGKVRSGEVLVGDQAHAEIDVERRRAIS 569 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +H+ATH++H LG +Q GS +P RFD T + + + L+ +ED VN ++ Sbjct: 570 RSHTATHMVHRGFRNALGESAAQAGSENSPGRFRFDFTSAGAVPPSVLRDVEDEVNAVLI 629 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +LPV ++ +A A GA AL G KY D VRVV V G +S LCGGTHV+++G+ Sbjct: 630 NDLPVRAFYTSQAEARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVATSGQ 684 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ I+ ESS+ AG+RR+EA+ G A L + + L+ LK + + R+E I Sbjct: 685 LGLIKILGESSVGAGVRRVEALVGLDAFRFLAKESVLVSQLSEQLKARREELPERIEGIV 744 Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 R + + + + + V+ ++H + +L+ + ++ Sbjct: 745 SRLRAAEKELERLRSAQVLAVAGELAAGARDVHGVSLVTHRAPDGTTADDLRKLALDVRG 804 Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 + + ++++ G+ + V+ A L ++AK LGGGG GGR +A Sbjct: 805 RFPADRAAVVVVAGVPANRPVVVVAANEAARERGVKAGQLVGVAAKALGGGG-GGRDDVA 863 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG + A+ V + + Sbjct: 864 QGGGSRPEAIEDALRAVEAAV 884 >gi|323127641|gb|ADX24938.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 872 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 320/912 (35%), Positives = 491/912 (53%), Gaps = 66/912 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 5 SSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT K F Sbjct: 65 NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPKWFGF 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY+T Y +D++++ W + G+ +I + DNFW + GP GP +EIFFD+G Sbjct: 121 PKEKLYMTYYPDDKDSYNRWISL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIFFDRG 176 Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232 G E +RYIEIWN+V QF + E LP +IDTG GLER Sbjct: 177 TEFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLER 236 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291 + V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I DG L Sbjct: 237 LVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNMSFKVIADHIRALSFAIGDGAL 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + IE+ + Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFIEKIV 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ G Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKNIFKLYDTYGFPVELTEEMAEEAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F A++EQ+ RARA + GS + +L ++ F+ Y+ Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGITESSTFL-YE-------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T V + + I+ E E GQ +VFDQTPFYAE GGQ+ Sbjct: 465 ---------------TETVDARLAVIIVDNERSEVVSEGQ-ALLVFDQTPFYAEMGGQVA 508 Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + +KA H + L + L ID++ R + NH+ Sbjct: 509 DRGVIKNANGDIVARVIDVQKAPNGQALHTVDVLASLALDTVYTLDIDHKRRYAVEKNHT 568 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL I+G H +Q GS + LRFD TH + +T EL+ IE+ VN I + L Sbjct: 569 ATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIWKALA 628 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T + E A + GA AL G KY VRVV + G +S LCGGTH+++T EI L Sbjct: 629 ITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSEIGLF 683 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 I+ E I +G RRI A+TGQ+A Q+ LK +A LK Q V +V + E+ Sbjct: 684 KILKEEGIGSGTRRILAVTGQQAFESFRKQEYALKEIAHILKAPQMDQVPAKVVSLSEQL 743 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 R LQ +A+ K + ++ + +++ +S D+ L++ D ++K S Sbjct: 744 RDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQKDYS 803 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++LV EK ++ +++ +A ++ ++ A ++ G GGG+P MA +GG + Sbjct: 804 EVLVLVAAIGEKVNVLVASKSKE----VHAGNMIKVLAPIVS-GRGGGKPDMAMAGGSDA 858 Query: 883 NKADQAIAGVAS 894 +K +A V Sbjct: 859 SKISDLMAAVPE 870 >gi|210633873|ref|ZP_03297888.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279] gi|210159042|gb|EEA90013.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279] Length = 884 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 334/893 (37%), Positives = 494/893 (55%), Gaps = 46/893 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR+ +L FF+ G +L PSSSL+P +DP+L+ N+GM FK + G++ Sbjct: 8 MTTAEIRSAYLNFFESKGCKLYPSSSLVP-DDPSLLLANAGMNQFKEFYQGKKVMKEIGA 66 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKCVR ND+D +G RH +FFEMLGNF+FGG K +A A++L+T+ F L Sbjct: 67 CSCQKCVRT----NDIDIIGADGRHASFFEMLGNFAFGGVTKGQACAWAYELITEVFKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RLY TV+ ED+E +W+ + G+ D I R+ +DNFW+ TGPCGPCSEI+FD GE Sbjct: 123 KDRLYFTVFTEDDETEAVWRSL-GVEPDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGE 181 Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G + +R++E WNLVF QF++Q LP ++DTGMGLERMA ++Q Sbjct: 182 EVGCGCDTCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANE 295 K++ +D D+ + LI+ E ++G Y ++ + R+I DH RS +FLI+DG+LP NE Sbjct: 242 KSSFFDGDVMQSLIKLGEDISGKTYVDDDYTGASRSLRIIADHARSVNFLISDGVLPGNE 301 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + RLLG + + + A+ MG AYP L++ L++ + +E+ Sbjct: 302 GRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPSLLENVGLVKGIVEAEE 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF TL+ G V LD LS L + E L G AF L+DT G P+D+ +I G +DI Sbjct: 362 ERFSTTLNNGRVYLDEQLSALAEGEQLPGSAAFMLHDTFGFPIDLTVEIAEGAGH-AVDI 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN + EQ++RARA + G G+ +W L ++ AT+F+GYD Sbjct: 421 EGFNAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFVGYDNESIEG-------- 472 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V AIV GE VE A + + VV D+TP YAE GGQ+GD G Sbjct: 473 --------------AHVLAIVVNGERVERAENAAEAAVVLDRTPLYAEMGGQMGDHGLID 518 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + +++ K H G L ++ D R L NH+ATHLL Sbjct: 519 TDDAQFFVSNTTAKGGLYV--HEGKLIGALSEGDTVFAGYDLNRRGLLCRNHTATHLLDA 576 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I PVVT++M Sbjct: 577 ALKEVLGDHVNQAGSLVSPENLRFDFTHFEAMTSEQIRAVEDLVNEQILAAQPVVTQVMG 636 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A ASGA AL G KY V V E S LCGGTH +T E+ L IVSESS Sbjct: 637 IDEAKASGAVALFGEKYGGVV-RVVSVGEGAEPFSRELCGGTHAKNTAELGLFKIVSESS 695 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +RRIEA+T A ++L + ++ A+ LK V RV + E R++ Sbjct: 696 TGSNVRRIEAVTSTGAIAYLEERAALAETAAASLKCRVEEVPARVHALQAELREVNQKLK 755 Query: 776 KRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K + + + + +S +++ +L++V D ++ K+ S ++ Sbjct: 756 KALTGGSSDAIASAIDAAVDMGGYQLVVAELSGLEAADLRNVWDTIRGKLSSACACVLAT 815 Query: 831 SKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 EK A + + F+A ++ + A ++ G GGGRP MAQ+GG N Sbjct: 816 VTEKGTPALIAAATDDAAAAGFHAGNVIKQIAPLV-DGRGGGRPTMAQAGGKN 867 >gi|325977827|ref|YP_004287543.1| alanyl-tRNA synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177755|emb|CBZ47799.1| alaS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 872 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L+ L + + G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ID F A++EQ+ RARA+ + GS + +L + F Y+ Sbjct: 413 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ + E GQ +VF +TPFYAE G Sbjct: 466 --------------------EVLDSTLSVIIADNKRTEAVSEGQ-ALLVFAKTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L ID + R ++ Sbjct: 505 GQVADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDVLASLSVGTTYTLEIDSKRRHRVI 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T E Sbjct: 625 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ KLQ +A+ K + + V +++ ++ D+ L++ D ++ Sbjct: 740 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L EK ++ ++D +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + K +A VA L Sbjct: 855 GSDAAKIADLLAAVAENL 872 >gi|312864541|ref|ZP_07724772.1| alanine--tRNA ligase [Streptococcus downei F0415] gi|311099668|gb|EFQ57881.1| alanine--tRNA ligase [Streptococcus downei F0415] Length = 873 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 319/918 (34%), Positives = 490/918 (53%), Gaps = 67/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF+++AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDQAIEWGYELLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FDL + +L++T Y +D++ + W G+ A ++ I DNFW + GP GP +EIF Sbjct: 117 WFDLPKDKLFVTYYPDDKDTYNRWIA-CGMEASHMVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF K ++ LP +IDTG Sbjct: 173 FDRGEDFDPDHVGLKLLAEDIENDRYIEIWNIVLSQFNADPKLDRKDYQELPSKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +V+ DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIRKVEKLSGKTYDPDGDNMSFKVVADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVPTVGKIMESYYPEILEKQDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 ++ ++ E+E F +T+D G L+ +L+ L D + L G FKLYDT+G P+++ +++ Sbjct: 353 QKIVKREEETFARTIDAGTGHLEELLAQLKADGKDTLEGKDIFKLYDTYGFPVELTEEMA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ID F A++EQ+ RARA + S + +L + F Sbjct: 413 QDKGYK-IDHAGFQAAMKEQQERARAAVVKGSSMGMQN--ETLAGIVEESTF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ + V+EA +GQ+ +VF +TPFYAE G Sbjct: 462 ----------------SYEKEALDSSLSVIIVDNKRVQEAETGQEALLVFKETPFYAEMG 505 Query: 526 GQLGDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G ++ +KA H + L+ + L ID++ R + Sbjct: 506 GQVADKGDIQDKAGQVLARVLDVQKAPNGQALHKVELLADLQVGQTYHLEIDHKRRYAVE 565 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G+H +Q GS + LRFD TH + +T+ EL+ IE+ VN I Sbjct: 566 KNHTATHLLHAALHKVIGNHATQAGSLNEEEFLRFDFTHFEAVTAQELRRIEEEVNQQIW 625 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 Q + V T + + A GA AL G KY VRVV + G +S LCGGTH+ +T E Sbjct: 626 QAVAVKTIETDIDTAKEMGAMALFGQKYGKEVRVVMI-----GDYSIELCGGTHLGNTSE 680 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TGQ+A Q++ LK +A+ LKV Q V +V + Sbjct: 681 IGLFKIVKEEGIGSGTRRILALTGQQAFEAFRKQEDALKKVAATLKVPQLEQVPAKVASL 740 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E R LQ A+ K + + A +++ + D+ L++ D ++ Sbjct: 741 NEANRDLQKEVAELKEKAAAAAAGDVFKDVKEAAGHRYIASQVQVSDAGALRTFADKWKQ 800 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L + K +VL+ + + A L + A ++ G GGG+P MA +G Sbjct: 801 ADYSDVLVLAAAIGQ-KVNVLVASKDKAVP---AGKLIKELAPIVS-GRGGGKPDMAMAG 855 Query: 879 GPNGNKADQAIAGVASFL 896 G + + VA L Sbjct: 856 GSEPSAIQALLDAVADKL 873 >gi|295099596|emb|CBK88685.1| alanyl-tRNA synthetase [Eubacterium cylindroides T2-87] Length = 875 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 320/915 (34%), Positives = 487/915 (53%), Gaps = 62/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL++F+ GH + P +SL+P NDPTL++ N+G+ K F G EKP Sbjct: 1 MKYLTGNQVRQMFLDYFKSKGHMIEPGASLVPNNDPTLLWINAGVAALKKYFDGSEKPRC 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + Sbjct: 61 NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSEE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +D+ +LY++VY +D++A+K+W ++ + I++ T DNFW + + GP GP SEIF Sbjct: 117 WMGIDKDKLYVSVYTDDDQAYKIWTEVCKVDPSHILK--TYDNFWEIGK-GPGGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RY+E+WN+VF Q++ + ++ LP+ +IDTGM Sbjct: 174 FDRGEKYDPEGLGEKLFFEEMENDRYVEVWNVVFSQYDCDPELDRKDYKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+ ++Q+ N+D DLF +I A+E++ YEG + +RVI DH+R+ +F ++D Sbjct: 234 GLERLVALIQDGETNFDTDLFLPIIHATEKLAKYPYEGEYKMAYRVIADHIRTLTFALSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G +N GRGYVLRR++RRA+ + LG + + L+P + M YP L + + Sbjct: 294 GANFSNSGRGYVLRRVLRRAVRFGLKLGLEDAFLYKLVPVVADTMQDFYPYLQEHVEFNQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + ++ E++ F KTL G LLD +S + L+G+V FKLYDT+G P ++ Q+I Sbjct: 354 KLIKVEEDTFKKTLKNGQALLDEEISKAKDGK-LSGEVVFKLYDTYGFPFELTQEIASES 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL F+ + +Q+ RAR S T+ L + FIGYD + Sbjct: 413 GLEVS-REEFDVEMNKQKERARNARNTKDSFATQNA--ELMNFTQESTFIGYDHME---- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + A+ + G +V+ + +V+ D T FYAE+GGQ+ Sbjct: 466 -------------------CDGKIIALFKDGHMVDTLS--DEGQVILDTTCFYAESGGQV 504 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G DG+ ++TDVQK +H +E GIL MSL +D R+ + NHS Sbjct: 505 ADAGTLSADGVMCKVTDVQKARNKQHIHSVEIESGILEVGMSLHCHVDEAKRKATTANHS 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 THLL AL ++G H+ Q GS + + LRFD H + +T+ +L IED VN IA P Sbjct: 565 CTHLLQSALKEVVGEHIHQAGSYVCDEYLRFDFNHFEKLTTKQLDEIEDLVNQYIAGAYP 624 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V IM+ E+A SGA AL KY DRVRVV++ G S C G HV +T +I L Sbjct: 625 VTKEIMDIEEAKKSGATALFNEKYGDRVRVVTM-----GDVSKEFCAGCHVENTSQIGLC 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767 I+SE SI + RRI A TG +A + L+++A K N+ +V+ ++ Sbjct: 680 KIISEESIGSDARRIVAKTGYQAYKECASEKNMLENIAISAKQKGIKNIDTKVDAAYQNM 739 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 LQ + K Q+ + VN + + +D+ LK ++ L+ K + Sbjct: 740 HALQKEIEQLKNQIFALKSNEWVNETVSLGSVNALIKKVEGMDAGALKDIVSNLKAKDPN 799 Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I+ G K + +D + +A L + +A++ G GGG+P MAQ+GG + Sbjct: 800 -IVCFFGNVSNDKIVFVSGAGKDAVSKGVHAGQLVKKAAQLCS-GNGGGKPDMAQAGGKD 857 Query: 882 GNKADQAIAGVASFL 896 +K ++A + S L Sbjct: 858 ISKLNEAFEAIKSEL 872 >gi|94990711|ref|YP_598811.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] gi|205830225|sp|Q1JG77|SYA_STRPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94544219|gb|ABF34267.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] Length = 872 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 320/918 (34%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R Q +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|15612227|ref|NP_223880.1| alanyl-tRNA synthetase [Helicobacter pylori J99] gi|6707753|sp|Q9ZJY5|SYA_HELPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4155760|gb|AAD06738.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99] Length = 847 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 324/891 (36%), Positives = 488/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FFQ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++TG+ Y + RV+ DH R+ +FL+A + EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTGLDYASEFQPSFRVVADHARAVAFLLAQEVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNVHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L+HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFENCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECLANALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G D + Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEAAL 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLTKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + ++ + ++ ++ V Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAIVF-KKENERITLACGV- 791 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +++ A A A++L GG GGGR A +GG + A+ + Sbjct: 792 KNVP--IKANAWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839 >gi|76788418|ref|YP_329556.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909] gi|123601966|sp|Q3K1P7|SYA_STRA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|76563475|gb|ABA46059.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909] Length = 872 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 318/918 (34%), Positives = 488/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ + L Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTE-EL 411 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 ID F A++EQ+ RARA + GS + +L ++F Sbjct: 412 AEDADYKIDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRF-------- 461 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + S + I+ E E GQ +VF QTPFYAE G Sbjct: 462 ----------------DYGADSLESNLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L I+ + R + Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ + + K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA L Sbjct: 855 GSDASKIAELLAAVAENL 872 >gi|306827097|ref|ZP_07460394.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782] gi|304430731|gb|EFM33743.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782] Length = 872 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 321/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSLD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R Q +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|288801454|ref|ZP_06406907.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288331665|gb|EFC70150.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 872 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 311/920 (33%), Positives = 489/920 (53%), Gaps = 77/920 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++ +FF GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MTANEIRESYKQFFASKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L LD Sbjct: 61 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAIDYAWEYLVDVLHLD 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D++A W+K L D II +DNFW M +TGPCGPCS Sbjct: 121 PKDLYVTVFEGSKEDNIARDDDAASFWRK--HLPEDHIINGNKHDNFWEMGDTGPCGPCS 178 Query: 174 EIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G +++ + IEIWN+VFMQF +++ L IDTGMG Sbjct: 179 EIHLDSRTPEEKLKVKGSELVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLSMNVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ LQ K +NYD D+F+ +I+ +++ Y +N V RVI DHLR+ +F IA Sbjct: 239 FERLVRALQGKNSNYDTDIFQPIIKEICKLSHKNYGEDNAVDVAMRVIADHLRAVAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ YA L E + L+P L EMG AYPEL + L Sbjct: 299 DGQLPSNAKAGYVIRRILRRAIRYAYTFLHQREAFIYRLIPTLIAEMGQAYPELTAQREL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I ++ E++ F +TL++G+ +L+ + L+G AF+L+DT+G PLD+ + I Sbjct: 359 IGRVIKEEEDSFLRTLEKGISMLNDAIEVLKKEGKSELDGVQAFRLFDTYGFPLDLTELI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 ++ F++ + +Q+ RAR ++ W L G QF+GYD Sbjct: 419 CREH-QITVNAEQFDEEMRKQKERARNAAV-----VESTDWVELAA--GEQQFVGYDYTE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R+V +K E+V + TPFY E Sbjct: 471 YECQILRYRQVTQKKNTY----------------------------FELVLNNTPFYGEM 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G + + ++I D +++ V+ + S + +D NR + Sbjct: 503 GGQVGDKGVLVNEDETIEIIDTKRENGQSIHI---VKTLPKDVKASFMACVDTDNRNASA 559 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHL+ +AL +LG HV Q GS ++ + LRFD +H + +T +L+ +E VN +I Sbjct: 560 ANHTATHLVDYALKQVLGDHVEQKGSYVSTESLRFDFSHFQKVTDEQLREVERLVNQLIR 619 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++ P+ R E+A GA ++ G KY D+VRVV S CGG H +STG Sbjct: 620 EDYPMDEHRDTPIEEAREMGAVSIFGEKYGDKVRVVRFGP------SCEFCGGIHATSTG 673 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 + + IV+E+S+ AG+RRIEAITG+ + ++ ++++ + + ++ G VE+ Sbjct: 674 RLGMFKIVTETSVAAGVRRIEAITGENCEELVYSLEDTIRAVKALFN-NTKDLKGAVEKF 732 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE ++ K K Q NVE L + + ++ ++ +D+ + K ++ ++ Sbjct: 733 IEENEAMKKEVEKFKAQ-NVERLKEFLLKGAKQQNGITIVTGVLP-IDASDAKDLVFKVR 790 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875 + S ++ ++G + K + +++++DL+ NA + R +AK++ GG GGG+PH A Sbjct: 791 EANPSHLLCVIGTTAGNKPLLSVMLSDDLVKEHNLNAGAMIREAAKLIKGG-GGGQPHYA 849 Query: 876 QSGGPNGNKADQAIAGVASF 895 +GG + + AI V Sbjct: 850 SAGGKDLEGLNAAIEKVIEL 869 >gi|169350062|ref|ZP_02867000.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552] gi|169293275|gb|EDS75408.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552] Length = 869 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 335/914 (36%), Positives = 502/914 (54%), Gaps = 65/914 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF+ GH++ PS SLIP +DPTL++ N+G+ K F G KP Sbjct: 1 MKQLTGNQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAALKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+LLT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDFAWELLTDEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D+ +LYITV+D DEEA+ W + G+ +++ T NFW + E GPCGP SEIF Sbjct: 117 WFAFDKDKLYITVHDHDEEAYNYWVDVIGVEPSHMLK--TPGNFWEIGE-GPCGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 +D+GE E +RYIEIWNLVF Q+ Q + LP+ +IDTGM Sbjct: 174 YDRGEKYDPEGLGLKLFYEELENDRYIEIWNLVFSQYNSQEGVDRNDYEELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+ +++Q+ N+D D F +I +E++ + Y N + +RVI DH+R+ +F +AD Sbjct: 234 GLERITSIIQDGETNFDTDFFLPIIHEAEKLANVSY-QENKMAYRVIADHIRTVTFALAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G L N GRGYVLRRI+RRA+ Y + +G + M +L+ + M Y L + I Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKQIGIEKAFMYNLVGVVSEIMKEFYDYLPEKVSYIS 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + ++ E+E F KTL G LL G++ D I++G AFKLYDT+G P ++ +I Sbjct: 353 DLVKKEEEAFHKTLSNGEKLLSGLIKK-NSDGIISGKDAFKLYDTYGFPFELTLEIAQES 411 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D F + L+ Q+ R+R + S T++K L + F YD Sbjct: 412 NLK-VDEEGFKEELKLQQMRSRGARVDNESMTSQK--PDLMAFDLPSSFE-YDPT----- 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + +V + + G ++ E+VFD T FYAE GGQ Sbjct: 463 ------------------NIRGVVIGLFKDGVKTDQL--NDYGEIVFDVTTFYAEMGGQC 502 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + ++ +V K +H +E G ++ L L ID + R +++ NH+ Sbjct: 503 ADTGIVYNDECKAKVVNVLKAPNQQHLHFVELESGSIKVGDVLTLEIDKEKRGKITANHT 562 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+L AL ++GSH++Q GS + + LRFD TH + IT+ +LK++E VND+I + + Sbjct: 563 ATHILQAALKEVIGSHINQAGSYVDDNRLRFDFTHFEKITNEQLKAVEQKVNDVIFKGID 622 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V M++E+A+ASGA AL KY D VRVVSV G +S LCGG HV+++ I L Sbjct: 623 VEIANMSKEEALASGAMALFDEKYGDTVRVVSV-----GNYSKELCGGCHVTNSSNIGLF 677 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 I +E S+ +GIRRIEA+TG+ A L+ + E + +++S LK+ ++ VV +V + EE Sbjct: 678 KIETEESVGSGIRRIEAVTGKIAYEALVLEKETVDTISSILKLKNRKEVVNKVTSLTEEL 737 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++ +LN + + I V + +++S + K + L+ KI S Sbjct: 738 NAVKKEVEALNSKLNALNAANRMNDIQDINGVKVLFVE-EDMESNKAKQLAFDLRDKIDS 796 Query: 823 GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 GI++LV +E K S + V++D + A D+ + ++ G GGG+P AQ G P Sbjct: 797 GIVILVSKFEE-KCSYFVGVSKDYVASGIKAGDVVKKINAIV-DGRGGGKPDFAQGGCPV 854 Query: 882 GNKADQAIAGVASF 895 K D + +F Sbjct: 855 NEKIDTIKDELKNF 868 >gi|269959066|ref|YP_003328855.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel] gi|269848897|gb|ACZ49541.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel] Length = 882 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 377/910 (41%), Positives = 513/910 (56%), Gaps = 54/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT G + Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L Sbjct: 65 VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS +G R+ E+WNLVFMQF + E LP IDTGMGLER A V+Q Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD DLFK +I+ S+ V G N + HRVI DH+R+++FLI++G+LP NEGR YV Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSPD---NSIAHRVIADHIRAAAFLISEGLLPGNEGRNYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TL RG+ LL + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 362 EGFVDTLRRGMALLAKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ + EQ+ R+R H +G G + ++W L+ ++ T+F+GYD Sbjct: 421 EGFNKGMGEQKERSRRHWVGSGEDASHRLWEELQAQHKNTRFVGYDC------------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V +I + G V+ SG+K ++ D +PFYAE+GGQ GD G Sbjct: 468 ----------CSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517 Query: 536 GDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G + +KA + +H + G+ ++ ID R +L NHS Sbjct: 518 GVSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N P Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637 Query: 649 VVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V+T + E A+ GA AL G KY VRVVS+ S LCGGTHV TG+I Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGA 691 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES I G+RRIEAITGQ L + L ++ L V G V +E + +E Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 751 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +L+ ++ +S V + + M + + K + GI Sbjct: 752 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA 810 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + + KA ++I V + A DL + A + G GGG +A+ Sbjct: 811 -IATAVDGKAVLIIGVGDTASKVLGASDLVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 866 Query: 887 QAIAGVASFL 896 +A++ + + + Sbjct: 867 EALSTILNKV 876 >gi|77413130|ref|ZP_00789330.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515] gi|77160831|gb|EAO71942.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515] Length = 872 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWXIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNXNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R LQ + + K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA L Sbjct: 855 GSDASKIAELLAAVAENL 872 >gi|322517303|ref|ZP_08070179.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124] gi|322124086|gb|EFX95636.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124] Length = 872 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 321/916 (35%), Positives = 489/916 (53%), Gaps = 68/916 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS +F I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L++L K L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F+ Y+ Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQERARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + IV + SGQ +VF+QTPFYAE G Sbjct: 465 -------------------AETAESHLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + V ++A H + G L + L ID+ R ++ Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHTRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H Q GS + LRFD TH + +T EL++IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + PV T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T E Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ LQ +A K + + V +++ + D+ L++ D ++ Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L E K +VL+ +A ++ ++ A ++ G GGG+P MA +G Sbjct: 800 ADYSDVLVLAAHIGE-KVNVLVASK---SKGVHAGNVIKVLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVAS 894 G + N ++ VA Sbjct: 855 GSDANGIQDLLSAVAE 870 >gi|161506983|ref|YP_001576937.1| alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] gi|205830127|sp|A8YTJ0|SYA_LACH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160347972|gb|ABX26646.1| Alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] Length = 879 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 321/920 (34%), Positives = 490/920 (53%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E++RF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEKRFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID + R L Sbjct: 506 QVADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + G SS CGGTH S+T +I Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K N++ +++ + Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q Q+N + D+ ++ + +L+ + D + Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + KA+++I + + L A DL + A + GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKVAPIFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G + AI V + K Sbjct: 859 GKRPEGLNDAIKAVIEEISK 878 >gi|218281062|ref|ZP_03487629.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989] gi|218217684|gb|EEC91222.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989] Length = 876 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 323/916 (35%), Positives = 484/916 (52%), Gaps = 61/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL++F+ GH + P +SLIP NDPTL++ N+G+ K F G EKP Sbjct: 1 MKQLTGNQIRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPAS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVGRT RHHTFFEMLGNFS G YFK+ AIQ AW+ LT + Sbjct: 61 NRIANAQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKDEAIQFAWEFLTSEE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +D+ RLY++VY +D A+++W I G+ I++ T+DNFW + + GP GP SEIF Sbjct: 117 WMGIDKDRLYVSVYTDDARAYEVWTTICGVDPSHILK--TDDNFWEIGK-GPGGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RY+E+WN+VF Q++ ++ LP+ +IDTGM Sbjct: 174 FDRGEKYDPEGLGEKLFFDEMENDRYVEVWNVVFSQYDCDPSIDRKDYKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+ ++Q+ N+D DLF +I+A+E + YEG + +RVI DH+R+ +F ++D Sbjct: 234 GLERLVALVQDGETNFDTDLFLPIIRATEAMAKHPYEGEYKMAYRVIADHVRTVTFALSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G +N GRGYVLRR++RRA+ Y LG EP + L+P + M YP L + + Sbjct: 294 GANFSNSGRGYVLRRVLRRAVRYGLKLGLDEPFLYKLVPVVADLMEDFYPYLQEHVEFNQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + ++ E+E F KTL G LLD +S + L+G+V FKLYDT+G P ++ Q+I Sbjct: 354 KLIKVEEETFKKTLKVGQALLDDEISKAKDGK-LSGEVVFKLYDTYGFPFELTQEIAEES 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ F+ + +Q+ RAR S ++ L ++FIGYD L Sbjct: 413 GITVS-HEDFDAQMNKQKERARNARNVKDSFASQN--EELMNFNEPSEFIGYDHL----- 464 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + A+ +G++V+ + ++ D+T FYAE+GGQ Sbjct: 465 ------------------TCDGKIIALFNAEGKMVDSLE--DEGMIILDKTCFYAESGGQ 504 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G DG+ +++ DVQK +H + G+L MSL ++ ++R + NH Sbjct: 505 VADKGTFSADGVDVEVLDVQKTRNKQHIHTVKINGGVLEKGMSLHGEVNVKDRLATTANH 564 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THLL AL +LG H+ Q GS P+ LRFD H + +T+ +L +E VN+ I+ Sbjct: 565 SCTHLLQSALVKVLGDHIHQAGSYNCPEYLRFDFNHYEKVTAEQLAEVERIVNEYISAAY 624 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV IM E+A SGA AL KY D VRVV++ G S C G HV +T +I L Sbjct: 625 PVTKEIMPIEEAKKSGATALFDEKYGDTVRVVTM-----GDVSKEFCAGCHVENTAQIGL 679 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766 I+SE SI + RRI A T A + L+++A K N+ +VE ++ Sbjct: 680 CKIISEESIGSDSRRITAKTKFAAYQDFASEHAMLENIADSAKQKGIKNIDTKVEAAYKT 739 Query: 767 YRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +Q K L+ VN + +S +D+ LK ++ L+ Sbjct: 740 MHDMQKEIDNLKNQIFTLKSKEWATEAKDFGKVNVLIKSVSGMDAGALKDIVSNLKANDD 799 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ V + EK V E + +A L + +A++ G GGG+P MAQ+GG + Sbjct: 800 KMVVFFVNTNGEKVVFVSGAGKEAVKAGVHAGQLVKKAAQICS-GNGGGKPDMAQAGGKD 858 Query: 882 GNKADQAIAGVASFLK 897 +K D+AI + LK Sbjct: 859 ASKVDEAINAITEELK 874 >gi|126434971|ref|YP_001070662.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS] gi|205830155|sp|A3PZ44|SYA_MYCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126234771|gb|ABN98171.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS] Length = 897 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 302/913 (33%), Positives = 461/913 (50%), Gaps = 69/913 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P YQ Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQS 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L+ TVY +D+EA +LW++++GL ++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGFDPEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 D+G + E RYIEIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 VDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL + +I A Y ++ V +R+I DH R+++ LI Sbjct: 235 ERVACLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LLG + ++ L+ + MG +YPEL+ I Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E+ F +TL G L + + L+G AF L+DT+G P+++ ++ Sbjct: 355 QRIAVAEETAFNRTLSSGSRLFEEAAQSTKAAGADRLSGRDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 L +D F + EQR RA+A + T+ + TQF G+D L Sbjct: 415 AEADL-AVDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL-- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTPF 520 + + I G V + A + ++E+V D++PF Sbjct: 472 ---------------------TTEARILGIFVDGRRVPVVGHDTATAQHRIELVLDRSPF 510 Query: 521 YAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 YAE+GGQ+ D G G + ++DVQK A+ ++VH VE G ++ +D Sbjct: 511 YAESGGQIADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVD 570 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R + HS TH++H AL +LG + Q GS P LRFD +T + IE Sbjct: 571 PRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIE 630 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N+ + + V + E A + GA AL G Y D VRVV + GG S LCGG Sbjct: 631 EVTNEAVEADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV S+ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V Sbjct: 687 THVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810 RV + E + + + +L ++ V ++ ++ + + +L+ Sbjct: 747 PARVAGLVERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLR 806 Query: 811 SVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 +++ ++ K+ ++ L+ ++ V D A +L + + G Sbjct: 807 TLVGDIRGKLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANELVKQFGAAVN-GR 865 Query: 868 GGGRPHMAQSGGP 880 GGG+ +AQ G Sbjct: 866 GGGKADLAQGSGK 878 >gi|327461590|gb|EGF07921.1| alanine--tRNA ligase [Streptococcus sanguinis SK1] gi|327489449|gb|EGF21242.1| alanine--tRNA ligase [Streptococcus sanguinis SK1058] Length = 872 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 324/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE SG ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A + ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|108799313|ref|YP_639510.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119868429|ref|YP_938381.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS] gi|123178848|sp|Q1B9I0|SYA_MYCSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830156|sp|A1UFI3|SYA_MYCSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108769732|gb|ABG08454.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119694518|gb|ABL91591.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS] Length = 897 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 302/913 (33%), Positives = 461/913 (50%), Gaps = 69/913 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P YQ Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L+ TVY +D+EA +LW++++GL ++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGFDPEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230 D+G + E RYIEIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 VDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL + +I A Y ++ V +R+I DH R+++ LI Sbjct: 235 ERVACLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LLG + ++ L+ + MG +YPEL+ I Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E+ F +TL G L + + L+G AF L+DT+G P+++ ++ Sbjct: 355 QRIAVAEETAFNRTLSSGSRLFEEAAQSTKAAGADRLSGRDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 L +D F + EQR RA+A + T+ + TQF G+D L Sbjct: 415 AEADL-AVDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL-- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTPF 520 + + I G V + A + ++E+V D++PF Sbjct: 472 ---------------------TTEARILGIFVDGRRVPVVGHDTATAQHRIELVLDRSPF 510 Query: 521 YAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 YAE+GGQ+ D G G + ++DVQK A+ ++VH VE G ++ +D Sbjct: 511 YAESGGQIADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVD 570 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R + HS TH++H AL +LG + Q GS P LRFD +T + IE Sbjct: 571 PRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIE 630 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N+ + + V + E A + GA AL G Y D VRVV + GG S LCGG Sbjct: 631 EVTNEAVEADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV S+ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V Sbjct: 687 THVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810 RV + E + + + +L ++ V ++ ++ + + +L+ Sbjct: 747 PARVAGLVERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLR 806 Query: 811 SVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 +++ ++ K+ ++ L+ ++ V D A +L + + G Sbjct: 807 TLVGDIRGKLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANELVKQFGAAVN-GR 865 Query: 868 GGGRPHMAQSGGP 880 GGG+ +AQ G Sbjct: 866 GGGKADLAQGSGK 878 >gi|224064089|ref|XP_002186563.1| PREDICTED: alanyl-tRNA synthetase [Taeniopygia guttata] Length = 968 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 316/969 (32%), Positives = 481/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SSS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASQIRQRFIDFFRENKHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA +LLTKE Sbjct: 66 LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALELLTKE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D E ++W + GL+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRIGDRD-ASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYLGQVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+++F KTL RG +LD + LG +++ GD A+ LYDT+G P D Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSLGDSKVIPGDTAWLLYDTYGFPAD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + + + + G Sbjct: 424 LTGLIAEEKGL-VVDMEGFEE----ERKNAQLKSQGKGAGGEDLLMLDI-YAIEELRAQG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + VKAI ++ + VEE +GQ+ +V D+T Sbjct: 478 LEVTDDSPK----YNYASDLSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + LTI Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQVHLTI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ E+K + Sbjct: 594 DEARRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQEIKKV 652 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE-----------Y 683 E N +I ++ V + +A G A+ Y D VRVVS+ Sbjct: 653 EGIANQMIEESKTVYAKDCPLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLADPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDE 740 G + S CGGTH+ ++ IVSE +I GIRRI A+TG AR L + Sbjct: 713 PGGSITSIEFCGGTHLQNSSHAGSFVIVSEEAIAKGIRRIVAVTGAEARKALRKVDSLRK 772 Query: 741 KLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 L +L + +KV +V + ++ E +++K +L A + L+ ++DL Sbjct: 773 LLSALEAKVKVQTAPNKDVQKEITDLGETLATAIIPQWQKDELREAVKALKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 AD+ + + + +K L + + ML + Sbjct: 833 SKADIQKRVLEKTKQVIESHPNQPWVIMEMENGASAKALNESLKLFKTNSPQTAAMLFAV 892 Query: 831 SKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E + + L V ++ A + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGRITCLCQVPQETANKGLKASQWVQEVSG-LMDGKGGGKDISAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + F + Sbjct: 952 LKLATDFAR 960 >gi|284801894|ref|YP_003413759.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284995036|ref|YP_003416804.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923] gi|284057456|gb|ADB68397.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284060503|gb|ADB71442.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923] Length = 832 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 331/869 (38%), Positives = 481/869 (55%), Gaps = 56/869 (6%) Query: 46 FKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105 K F G P + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE Sbjct: 1 MKKYFDGSVIPDNPRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEG 56 Query: 106 AIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163 AI AW+ LT K D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + Sbjct: 57 AIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDI 114 Query: 164 AETGPCGPCSEIFFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFIL 219 GP GP SEIF+D+G E ERY+EIWNLVF QF L Sbjct: 115 G-IGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPL 173 Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVD 277 PK +IDTGMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI D Sbjct: 174 PKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIAD 233 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337 H+R+ +F I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S Y Sbjct: 234 HIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFY 293 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHG 395 PE+ I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G Sbjct: 294 PEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFG 353 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+++ ++ GL +D F ++EQR+RARA + S + L + Sbjct: 354 FPVELTEEYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKS 410 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 F+GY+ S + ++Q +V+E +G + +V+F Sbjct: 411 AFVGYNSTEHV-----------------------SEILYLIQNDTLVDEVAAGNEAQVIF 447 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +TPFYAE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L + Sbjct: 448 KETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAV 507 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR+ NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL + Sbjct: 508 DRVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKM 567 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E+ VN+ I + + VV M +A GA AL G KY D VRVV V G +S LCG Sbjct: 568 EEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCG 622 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 G HV +T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + Sbjct: 623 GVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKE 682 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELK 810 +VE + + R+++ + +L + +I V ++ ++ D +L+ Sbjct: 683 TPQKVELLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLR 742 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869 +D + K GI++L + + K +++ V+E+ + ++A L + A GG GG Sbjct: 743 QFVDNWKDKKIGGILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGG 800 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP MAQ+GG N + A+ V++++K+ Sbjct: 801 GRPDMAQAGGKNPAELRTALDYVSTWVKE 829 >gi|56416520|ref|YP_153594.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries] gi|81599193|sp|Q5PBJ0|SYA_ANAMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56387752|gb|AAV86339.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries] Length = 882 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 375/910 (41%), Positives = 514/910 (56%), Gaps = 54/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT G + Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L Sbjct: 65 VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS +G R+ E+WNLVFMQF + E LP IDTGMGLER A V+Q Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD DLFK +I+ S+ V G N + HRVI DH+R+++FLI++G+ P NEGR YV Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSPD---NSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TL RG+ LL+ + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 362 EGFVDTLRRGMALLEKEIGGLSPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ + EQ++R+R H +G G + ++W L+ ++ T+F+GYD Sbjct: 421 EGFNKGMGEQKARSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYDC------------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V +I + G V+ SG+K ++ D +PFYAE+GGQ GD G Sbjct: 468 ----------CSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517 Query: 536 GDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G + +KA + +H + G+ ++ ID R +L NHS Sbjct: 518 GVSGVKNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N P Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637 Query: 649 VVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V+T + E A+ GA AL G KY VRVVS+ S LCGGTHV TG+I Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGA 691 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES I G+RRIEAITGQ L + L ++ L V G V +E + +E Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 751 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +L+ ++ +S V + + M + + K + GI Sbjct: 752 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA 810 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + + KA ++I V + A +L + A + G GGG +A+ Sbjct: 811 -IATAVDGKAVLIIGVGDTASKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 866 Query: 887 QAIAGVASFL 896 +A++ + + + Sbjct: 867 EALSTILNKV 876 >gi|313124260|ref|YP_004034519.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280823|gb|ADQ61542.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685733|gb|EGD27811.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 877 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 323/917 (35%), Positives = 484/917 (52%), Gaps = 62/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 DLD+ +LY+TVY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLDLDKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF +F P +IDTGMGLE Sbjct: 174 YDRGQENNDVPEDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E+++ KY + + ++I DH+R+ SF I D Sbjct: 234 RVLSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDTSFKIIADHIRAISFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP N GRGYVLRR++RRA R LG + L+P + M S YPE+ I Sbjct: 294 GALPGNTGRGYVLRRLLRRAALNGRKLGIAGAFLYKLVPVVGDIMKSHYPEVSDQAEFIS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RFG TL+ GL LLD ++ +D+ ++G AFK++DT+G P ++ + Sbjct: 354 KVIKNEEDRFGVTLEAGLTLLDDLIDKAEKSEDKTISGKDAFKMFDTYGFPYELTVEAAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F+ +E Q+ RAR L S ++ +L + + F Sbjct: 414 DKGLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF--------- 461 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+ ++V++A G+K ++FD+TPFYAE GG Sbjct: 462 ---------------EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + L + L ID R L Sbjct: 506 QVADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVILPLVKGQTYKLKIDRARREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 ++ V T + E GA AL KY D+VRVV + S CGGTH +T +I Sbjct: 626 SIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SE +I AG+RRIEA+T + A +L G+ + L + + +K ++ ++ + Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASLQ 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R + +A K Q+N + D+ ++ I +L+ + D + + Sbjct: 741 EELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L S++K ++ + + L A DL + A + GGGG GGRP+MAQ+GG Sbjct: 801 GKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFL 896 AI S L Sbjct: 860 KKPEGLQDAIDAAVSQL 876 >gi|295425855|ref|ZP_06818535.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] gi|295064458|gb|EFG55386.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] Length = 879 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 323/920 (35%), Positives = 491/920 (53%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF+ AI AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRNEAITWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD+ +LY TVY +D ++ K+W+K +G+ + I ++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLDKSKLYCTVYPKDIDSQKVWEK-AGMPKNHIFKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQGAPTNFETDLFLPIIHATEEMTPGKKYGVNKADTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNNGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD +++ ++ ++G AFKL+DT+G P ++ + Sbjct: 353 NVIQNEEERFQATLDSGLTLLDELIAKAKKSDNKTISGKDAFKLFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL ID F++ ++ Q+ RAR L S + + +L ++F Sbjct: 413 DAGLK-IDKKGFDKEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSEF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + IV ++V +A G++ +VFD+TPFYAE GG Sbjct: 461 --------------EYGKYEEDHAKLIDIVVNDKLVNKA-DGEEAILVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + L VL ID + R L Sbjct: 506 QVADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDIILPLEKGQEYVLKIDRERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHTATHLLHAALRQVLGEHTHQAGSLVEPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + E+ GA AL KY D+VRVV V G SS CGGTH +T +I Sbjct: 626 AIQVKTTVTTPEEGKKMGALALFNGKYGDKVRVVQV-----GDFSSEFCGGTHCDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + +K ++ +++ + Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLADRSTLLDDIQEHVKATKPDGIMDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 Q ++N + K D+ ++ +L+ + D+ + Sbjct: 741 SSLHDAQKQIEDLTKKINQAKAGEIFDNVQKAGDLTVIAATADVSGMNDLRELADSWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + KA+++I + + LD+ A DL + +A + GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLAA-KNDGKANMIISLNKKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G D+AI V S + K Sbjct: 859 GKKPEGIDEAIKTVISEISK 878 >gi|222474888|ref|YP_002563303.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida] gi|255002859|ref|ZP_05277823.1| alanyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico] gi|222419024|gb|ACM49047.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida] Length = 882 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 374/910 (41%), Positives = 514/910 (56%), Gaps = 54/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT G + Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L Sbjct: 65 VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS +G R+ E+WNLVFMQF + E LP IDTGMGLER A V+Q Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD DLFK +I+ S+ V G NN + HRVI DH+R+++FLI++G+ P NEGR YV Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TL RG+ LL+ + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 362 EGFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ + EQ+ R+R H +G G + ++W L+ ++ T+F+GYD Sbjct: 421 EGFDKGMGEQKERSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYDC------------- 467 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V +I + G V+ SG++ ++ D +PFYAE+GGQ GD G Sbjct: 468 ----------CSTKASVLSITRDGMAVQSVNSGERACLLLDVSPFYAESGGQEGDKGSIT 517 Query: 536 GDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G + +KA + +H + G+ ++ ID R +L NHS Sbjct: 518 GVSGVNNSGGVNIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N P Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKP 637 Query: 649 VVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V+T + E A+ GA AL G KY VRVVS+ S LCGGTHV TG+I Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGA 691 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES I G+RRIEAITGQ L + L ++ L V G V +E + +E Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 751 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +L+ ++ +S V + + M + + K + GI Sbjct: 752 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA 810 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + + KA ++I V + A +L + A + G GGG +A+ Sbjct: 811 -IATAVDGKAVLIIGVGDTASKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 866 Query: 887 QAIAGVASFL 896 +A++ + + + Sbjct: 867 EALSTILNKV 876 >gi|330466938|ref|YP_004404681.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032] gi|328809909|gb|AEB44081.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032] Length = 892 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 329/931 (35%), Positives = 498/931 (53%), Gaps = 74/931 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I+ +L F+ NGH ++PS+ L +DP L+F N+GMV F F GQ+ P + Sbjct: 1 MKTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQSPPFPRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK+ AI AWDL TK Sbjct: 61 VSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDGAIPFAWDLATKSVEAG 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD R++ TVY +D+EA+ +W +G+ A++I+R DNFWSM GP GPCSE++ Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWL-HTGVPAERIVRRGKKDNFWSMGIPGPAGPCSELY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + +RY+E WNLVFMQ+E ++ + LPK +IDTGMGL Sbjct: 176 YDRGPEY-GLEGGPEVDEDRYLEFWNLVFMQYEIADVRSKEEFRIVGELPKKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA++LQ N Y+ID + +++ + ++TG +Y + V RV+ DH+R Sbjct: 235 ERMASILQGVDNLYEIDEVRPILERAAELTGKRYGAQSGQAANQSHPDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 ++ LI DG+ P+NEGRGYVLRRIMRRA+ RLLG+ E + LLP M +YPEL Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398 I +E++ F TL G +LD ++ L+GD AF+L+DT+G P+ Sbjct: 355 ATDFDRISAYAYAEEDAFLATLRAGTTILDTAITETKSAGKPALSGDKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457 D+ +I +GL +D F + + +QR+RA+A + +G T+ + S+ + G F Sbjct: 415 DLTLEIAAEQGL-DVDQEGFRRLMADQRARAKADAQARKTGHTDLSAYRSVLDAGGPVTF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY S V+A++ AV G VE+V D Sbjct: 474 TGYTET-----------------------ARESTVRAVLGTDGPRAAAVEGDMVELVLDT 510 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R + ID Sbjct: 511 TPFYAEGGGQQPDLGMITVGGGQVEVLDVQQPVPGLIVHRARVIRGEVRAGETGYAEIDT 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR +S +H+ATHL+H + LG +Q GS P LRFD + + + L+ +E Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTATGVAPSVLRDVEQ 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+++ +L V + + ++A GA AL G KY D+VRVV V G ++ LCGGT Sbjct: 631 QVNEVLLADLEVHAFVTSLDEARRIGAMALFGEKYGDQVRVVEV-----GDYARELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HVS +G++ L+ I+SESSI +G+RR+EA+ G A + L + + LA +V V Sbjct: 686 HVSRSGQLGLVKILSESSIGSGVRRVEALVGMDAFNFLAREHLLVSRLAELYRVPSEQVA 745 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVE--DLSCHKIADVNFMSHI----ISEVDSKELKS 811 RVE+ + R + K + QL + + DV ++++ ++++ Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAAAFAAQAKDVRGVAYVGIEAPEGAAGNDVRT 805 Query: 812 VMDALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867 + ++ +I G++ + S KAS+++ V R A DL + + G Sbjct: 806 LAQEIRGRIDAARPGVVAVASRSN-GKASLVVSVNPAARSRGLAANDLVKAAFS----GR 860 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGG P +AQ GG ++ + V + + Sbjct: 861 GGGSPDLAQGGGLPESEVPTLLLTVEKAIAE 891 >gi|194863135|ref|XP_001970293.1| GG23450 [Drosophila erecta] gi|190662160|gb|EDV59352.1| GG23450 [Drosophila erecta] Length = 966 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 304/973 (31%), Positives = 456/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LTK L + RLY+T + DE E ++W + GL + I+ + DNFW M E Sbjct: 121 LTKRLALPKDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + G + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGPDDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E SGQK +V Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H + G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGIVEGTLKVGDELELH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTDQKGSLVVPEKLRFDFNSKAAMTIEQVAK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E +++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDDLEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776 + + LK + +V E+I +E R L K Sbjct: 772 QEI-VRLKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830 Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 R L+ V + + + + ++ K L + + ++ ++ M Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEK 949 Query: 885 ADQAIAGVASFLK 897 D+ + + F + Sbjct: 950 VDEIVQLASKFAQ 962 >gi|89890332|ref|ZP_01201842.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7] gi|89517247|gb|EAS19904.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7] Length = 873 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 323/906 (35%), Positives = 475/906 (52%), Gaps = 72/906 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR TFL+F++ HE++ S+ ++ NDPTLMF N+GM PFK F G Y + Sbjct: 1 MKSQQIRQTFLDFYKSKQHEVVASAPMVIKNDPTLMFVNAGMNPFKEYFLGINDSKYSRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D Sbjct: 61 ADSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+T+++ D EA+ WK++ ++ D+I+ DNFW M + GPCGPCS Sbjct: 121 KDCLYVTIFEGDTSENLERDTEAYDYWKEL--IAEDRILNGNKKDNFWEMGDQGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G + + + +EIWNLVFMQ+++ LP +DTGMG Sbjct: 179 EIHVDIRTAEEKAAVDGASLVNADHPQVVEIWNLVFMQYKRMADGSLKNLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A V+Q +NYD D+F LI+ E +TG Y + RVI DH+R+ SF IA Sbjct: 239 FERLAMVMQGVQSNYDTDVFTPLIREIETITGHAYGKTEQEDIAIRVIADHVRAVSFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K L Sbjct: 299 DGQLPSNNGAGYVIRRILRRAIRYGFTYLNKKEPFIYMLVNTLSKQMGDAFPELKSQKNL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I ++ E++ F + LD+GLVLLD ++ + I++G+ AF+LYDT+G P+D+ I Sbjct: 359 ILNVIKEEEQSFLRALDQGLVLLDSMITAAKSNSQNIIDGNKAFELYDTYGFPIDLTALI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +G+ +D F +A+ Q+ R+RA S TT W L+ +FIGYD L Sbjct: 419 LREKGME-LDEAGFEKAMAAQKQRSRAA-----SETTTSDWTELRSD-DTQEFIGYDKLE 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RK V G ++VF+ TPFY E+ Sbjct: 472 ADVRISRYRK---------------------------VTTKKDGDLYQLVFNMTPFYGES 504 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ GD G KK G VH + E S +D R + S Sbjct: 505 GGQTGDKGYLESPSGDTIYIIDTKKENGQTVHL--TKNLPKDLEGSHKAVVDANQRHRTS 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q GS + LRFD +H +T +L+ +E+ VN I Sbjct: 563 SNHTATHLLHQALRKVLGDHVEQKGSMVRSASLRFDFSHFAKVTPEQLQEVENFVNARIR 622 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + LP+ R + A+ GA AL G KY D VR + S LCGGTHV++T Sbjct: 623 EQLPLEENRTNTYDAAVEDGAMALFGEKYGDVVRTIKFG------KSYELCGGTHVANTA 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ I+SE ++ AGIRRIEAI+ + Q + + LK + N + ++ Sbjct: 677 DVWHFKIMSEGAVAAGIRRIEAISSDAVKDFFAEQSRHFDEIKTILKSNTKNPADAIAQL 736 Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E L+ + S I VNF++ +++D+K +K + +++ Sbjct: 737 QDENAALKKEIEQLLKAKAGNLKGDLIASAQDINGVNFIATQ-TDLDAKSVKELAFEIER 795 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ + + +++G S KA++ ++++++L+ NA + R K + GGG GG+ H A Sbjct: 796 EMDN-LFLIIGASNGDKATLTVMISKNLVEEKDLNAGSIVRELGKHIQGGG-GGQAHFAT 853 Query: 877 SGGPNG 882 +GG N Sbjct: 854 AGGKNP 859 >gi|146421805|ref|XP_001486846.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC 6260] gi|146387967|gb|EDK36125.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC 6260] Length = 964 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 311/965 (32%), Positives = 485/965 (50%), Gaps = 94/965 (9%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 S +R+TFL++F +K+GH+ +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 22 ASKVRSTFLDYFKEKHGHQFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASEMST 81 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI+ AW+LLT Sbjct: 82 WKRAVNSQKCIRAGGKHNDLEDVGQDSYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTDV 141 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY+T ++ DE EA + W G++ D I+ DNFW M + GPC Sbjct: 142 YKLDPDRLYVTYFEGDEKLGLGPDLEAKQFWLD-RGVAEDHILTGDAKDNFWEMGDQGPC 200 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWNLVFMQ+ ++ LP IDTG+G Sbjct: 201 GPCSEIHYDRIGN-RNAAHLVNMDDPNVLEIWNLVFMQYNREPDSSLRPLPAKHIDTGLG 259 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ+K++NYD D+F+ + +++G++ +RVI DH+R Sbjct: 260 FERLVSILQQKSSNYDTDVFQPIFDKIREISGVRPYTGKFGSEDKDGIDTAYRVIADHVR 319 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F I DG +P NEGRGYVLRRI+RR Y R L+P + + +P Sbjct: 320 TLTFAITDGGVPNNEGRGYVLRRILRRGARYVRKYLNCPIGSFFQQLVPVVIEQNSEIFP 379 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396 E+++ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+G Sbjct: 380 EILRNMQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 439 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID F +A E ++A S G++Q Sbjct: 440 PVDLTRLMAAEAGLK-IDEEGFEKARLESWEASKASSNK-----------------GSSQ 481 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + D+ S+ + V + V I V+ GQ+V ++ Sbjct: 482 LVKLDVHALSELDSNANIPKTNDSYKYGLDDVKAEVVGIYDGSSFVDSVSEVGQQVGILL 541 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ D G + DG D + G +H + G L+ + ++ Sbjct: 542 DKTSFYAEQGGQEYDKGKIVIDGSAEFEVDNVQVYGGYVLHTGSIVYGTLKVKDEVLACY 601 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + +T AEL + Sbjct: 602 DELRRWPIRNNHTGTHVLNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQGLTPAELTKV 661 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEY 683 E N I+ N V + + DA +G A+ G Y D VR + + Sbjct: 662 EAISNKYISDNKEVFAKDVPLADAQQINGLRAVFGETYPDPVRVVSVGVPVEDLLKDPKR 721 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---------- 733 ++ S CGGTHV+ TGEI L I+ ES I GIRRI A+TG A Sbjct: 722 DEWHQVSVEFCGGTHVAKTGEIKDLVIIEESGIAKGIRRIVAVTGTEAHRVQKLAKDYDS 781 Query: 734 ---------HLMGQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIH 774 +++K K L +K +V+ + + I ++ + Q Sbjct: 782 QLSEAEAMPFGSSKEQKTKELGVAIKKLSISVLDKQMLNTKFTKLDKSIKDQLKAKQKEE 841 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +K+ L+ L+ +D F+SHI ++K + ++ ++K+ S I L S Sbjct: 842 SKKVLEAVNNWLTSEDSSDY-FVSHIDISANAKAITDAINLIKKEHNSKTIYLFAGS--D 898 Query: 835 KASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + V++D + N+ DLA L++ + GG GG+ ++ Q G + ++A+ + Sbjct: 899 KVAHGCYVSDDAISKGVNSNDLAALASTSI-GGKAGGKGNVVQGMGDKPSGIEKAVEDIT 957 Query: 894 SFLKK 898 + L K Sbjct: 958 AALSK 962 >gi|328462753|gb|EGF34642.1| alanyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463] Length = 879 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 321/920 (34%), Positives = 490/920 (53%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF LD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID + R L Sbjct: 506 QVADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + G SS CGGTH S+T +I Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQI-----GDFSSEFCGGTHCSNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K N++ +++ + Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q Q+N + D+ ++ + +L+ + D + Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + KA+++I + + L A DL + +A + GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G + AI V + K Sbjct: 859 GKRPEGLNDAIKAVIEEISK 878 >gi|260102891|ref|ZP_05753128.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075] gi|260083304|gb|EEW67424.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075] Length = 879 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 321/920 (34%), Positives = 490/920 (53%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + + LG + L+P + M S YPE++ + IE Sbjct: 293 GALPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIE 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF LD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 353 NVIQNEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S + + +L + F Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID + R L Sbjct: 506 QVADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + G SS CGGTH S+T +I Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K N++ +++ + Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q Q+N + D+ ++ + +L+ + D + Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + KA+++I + + L A DL + +A + GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G + AI V + K Sbjct: 859 GKRPEGLNDAIKAVIEEISK 878 >gi|15834749|ref|NP_296508.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg] gi|270284916|ref|ZP_06194310.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg] gi|270288943|ref|ZP_06195245.1| alanyl-tRNA synthetase [Chlamydia muridarum Weiss] gi|13878778|sp|Q9PLH5|SYA_CHLMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|7190160|gb|AAF39003.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg] Length = 875 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 322/906 (35%), Positives = 494/906 (54%), Gaps = 47/906 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYTNRNHTPVASSPVFPYNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L ++I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKATSPLEDADGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLSET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++ + Y RVI DH+RS SF I DG+LP N RG Sbjct: 239 DTVFEADVLRHLIAKVENLSEITYSPTESKGSAFRVIADHVRSLSFAITDGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL A+ I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGKRLGFHRPFLAEIVPSLIETMGEAYPELQAAETQIQEVLTTEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + +D+ +F Sbjct: 359 FKTLQRGGNLLHQVLKSSASLSKISGEDAFKLKDTYGLPIDEIALLAKDHNYT-VDMDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R +++ F + ++F+GYD+L F Sbjct: 418 RKLEMEAKERSRKNTVKN--KNDSDSIFQDVDPTNTSEFVGYDMLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ IV+ EI G++ ++ TPFYAE GGQ+GD+G + Sbjct: 466 -------------IEGIVKYNEIASTLEEGEEGAIILRTTPFYAEKGGQVGDSGEIFCES 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ HH + +G L+T M++ ++ R++++ NH+ HLLH AL Sbjct: 513 GTFLVSHTTTPKAGLIAHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D +H+K ++ EL +IE VN+ I +N+PV R D Sbjct: 573 VSLGEHIRQAGSYVDSQKIRLDFSHNKALSPEELLTIETLVNEKIRENVPVTIREALYSD 632 Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + S G KY D VRVVS S LCGGTH +TG+I I E ++ Sbjct: 633 VMNSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHARATGDIGYFRITKEHAVS 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA TG+ A + GQD L +A+ ++ + ++ ++ + EE + L A Sbjct: 687 TGIRRIEATTGEDAENIARGQDTDLNEIATIIQSPKDQLLVKLRNVMEEKKDLAKQLANL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + K+ + +++ + ++E + + ++ + L K++ + I L K Sbjct: 747 ENQLVQQQVKSLLTSCDKVNETSYLVYHLTEEEGQRIQHYANTLHKEVPAKFISLWVTEK 806 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + VL+ V++DL+ +A L GG GG+ AQ + + + Sbjct: 807 NDRYIVLVRVSDDLVKQGIDAQALLEELLAP-YGGRCGGKAVSAQGSSKELPQI-EVLNT 864 Query: 892 V-ASFL 896 + ++ Sbjct: 865 ILRQWI 870 >gi|325694024|gb|EGD35942.1| alanine--tRNA ligase [Streptococcus sanguinis SK150] Length = 872 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 324/915 (35%), Positives = 491/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE +G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L IDY R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVKDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDYSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|195438477|ref|XP_002067163.1| GK24844 [Drosophila willistoni] gi|194163248|gb|EDW78149.1| GK24844 [Drosophila willistoni] Length = 967 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 294/977 (30%), Positives = 451/977 (46%), Gaps = 98/977 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +R +L FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 4 MTAKMVRDAYLGFFKEKKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEMS 63 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT Sbjct: 64 KWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTD 123 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 L + RLY+T + DE E +LW + G+ + ++ + DNFW M ETGP Sbjct: 124 RLKLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GIKPEHVLPGSMKDNFWEMGETGP 182 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ FD+ +++ +EIWNLVF+Q+ +++ LPK ID GM Sbjct: 183 CGPCSELHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCGM 241 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279 G ER+ +V+Q K +NYD DLF+ L + + G + +RV+ DH Sbjct: 242 GFERLVSVIQNKRSNYDTDLFQPLFEHIQSSTGAPAYQGRVGADDSDGIDMAYRVLADHA 301 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A+P Sbjct: 302 RTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLKAKPGMFASLVNTVVELLGDAFP 361 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397 E+ + I + + E+++F KTL RG LL+ + L +I+ GDVA++LYDT+G P Sbjct: 362 EVKKDPQHIIDIINEEEQQFLKTLTRGRNLLNRTIEKLGADQKIIPGDVAWRLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEK 451 +D+ Q + + + E + + S G GS E+I L+++ Sbjct: 422 VDLTQLMAEEKS-----LEIDMAGYEAAKQNSYILSQGKGSSKIEEINLDVHAISQLQDQ 476 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 T F + ++ SS + AI + + V+ +GQK Sbjct: 477 GVPT--------TNDSFKYKYEAESEERDSPYNYETCSSKILAIRFENQFVQSISNGQKA 528 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMS 570 +V D T FYAE+GGQ+ D G + + G ++ H V G L Sbjct: 529 GIVLDNTNFYAESGGQIYDQGALVKANDEANEFLVDRVYNRGGYILHIGVVEGTLAVGDD 588 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 L L ID R NHSATH L+H L +LG Q GS + P+ LRFD +T Sbjct: 589 LQLHIDVTRRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKGAMTIE 648 Query: 631 ELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE------- 682 ++ E+ ++ +N+P+ + G ++ Y D VRV+S Sbjct: 649 QVAKTEELTRQMVYKNVPIYAKESKLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLE 708 Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A + Sbjct: 709 EQPNGEAGDNTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEAIKAIKKS 768 Query: 739 DEKLKSLASFLKVSQG---------NVVGRVEEIWEE-----------------YRKLQL 772 ++ + + LK + V ++ E+ E+ + L+ Sbjct: 769 EQFEQEI-VTLKATIEADTTGKDSKQHVKQIVELTEQISHATIPYVKKDEMRNLLKSLKK 827 Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQS 822 ++ L C + + + ++ K L + + ++ ++ Sbjct: 828 TLDDKERALRAAVSVTVVERAKALCEENPTATVLVQQLEAYNNTKALDAALKQVRSQLPD 887 Query: 823 GIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 M + + KK L V + +++ A + + ++ L GG GGG+P AQ+ G Sbjct: 888 TAAMFFSVDVDSKKIFCLSSVPKSAVEKGLKANEWVQHLSQSL-GGKGGGKPESAQASGT 946 Query: 881 NGNKADQAIAGVASFLK 897 N D+ + F + Sbjct: 947 NYESVDEILQLATKFAQ 963 >gi|301604154|ref|XP_002931707.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Xenopus (Silurana) tropicalis] Length = 968 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 323/974 (33%), Positives = 485/974 (49%), Gaps = 96/974 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 S IR F++FF++N H + SS+ +P +DPTL+F N+GM FK IF P + Sbjct: 5 MTASEIRQKFIDFFKENAHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMA 64 Query: 59 --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTK Sbjct: 65 KLNRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTK 124 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 EF +D RLY+T + + D E ++W + GL +I+ + DNFW M +TGP Sbjct: 125 EFGIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLPESRILPGSMKDNFWEMGDTGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI FD+ + + +EIWNLVF+QF ++ LPK SIDTGM Sbjct: 184 CGPCSEIHFDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTGM 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ +VLQ K +NYD DLF +A E+ TG + + +RV+ DH Sbjct: 243 GLERLVSVLQNKMSNYDTDLFVPYFEAIEKGTGARPYTGKVGAEDVDGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG P N GRGYVLRRI+RRA+ YA L ++ L+ + +G+A+P Sbjct: 303 RTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFATLVDVVVQSLGNAFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + ++++ + E+ +F KTL+RG +LD ++ LG+ +++ GD A+ LYDT+G P+ Sbjct: 363 ELKKDPDMVKDIINEEETQFLKTLNRGRRILDRKINSLGEHKVIPGDTAWLLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ I RGL +D+ SF + +R A+ S G G+G + + + Sbjct: 423 DLTSLIAEERGLT-LDLESFEE----ERKAAQLKSQGKGTGDEDLLMLDIYAI------- 470 Query: 459 GYDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + LR D K + + + VKAI + VEEA +GQ+ +V Sbjct: 471 --EELRSQGLEPTDDLPKYKYTSNADGVYEFESLIATVKAIRRDKMFVEEASTGQECGLV 528 Query: 515 FDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 D+T FYAE GGQ D G + + + T + G +V H G L+ Sbjct: 529 LDKTCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHMGTLYGHLKVGDQ 588 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L +D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ Sbjct: 589 VCLYVDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 647 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE------- 682 E++ E+ NDII +N V + +A G A+ Y D VRVVS+ Sbjct: 648 EIRKTEEIANDIIKENKVVYALDCSLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLL 707 Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G + S CGGTH+ ++G IV+E +I GIRRI A+TG A+ L Q Sbjct: 708 ADPSSPAGSITSVEFCGGTHLQNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQ 767 Query: 739 DEKLKSLASFLK------VSQGNVVGRVEEI-----------------WEEYRKLQL--- 772 D +L+ K +V + ++ E+ + L+ Sbjct: 768 DALKVNLSDLEKKVKKQNSPNKDVQKEIADLSENLATASIAQWQKDVLREQLKTLKKTMD 827 Query: 773 ---IHAKRKLQLNVEDLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQSGII 825 +K +Q V +++ I + + + + +K L + L+ + Sbjct: 828 DLDRASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPHTAA 887 Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 M+ + + K + L V +D D+ A + + + L G GGG+ AQ+ G N Sbjct: 888 MIFSVDNDAGKITCLCQVPQDTADKGLKANEWVQQVSD-LMDGRGGGKDTSAQATGKNVG 946 Query: 884 KADQAIAGVASFLK 897 Q + F K Sbjct: 947 CLSQVLKLAEDFAK 960 >gi|109946744|ref|YP_663972.1| alanyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba] gi|122973456|sp|Q17ZF3|SYA_HELAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|109713965|emb|CAJ98973.1| alaS [Helicobacter acinonychis str. Sheeba] Length = 847 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 322/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG P T+ Sbjct: 2 DIRNEFLQFFKNKGHEIYPSMPLVP-NDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EAFKLW+K + DKI ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAFKLWEKF--VPTDKIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RR++ + L+G E + ++ +C + + L ++K ++ + E++RF +TL+ Sbjct: 299 ILRRSLRHGYLMGLKEAFLYRVVGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL ++I +G +AFKLYDT G PLD+ D+L G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRNHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKRNNA---DFSTILNAYAPNVFVGYETTECFSQALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + E Q+V V+ ++TPFYAE GG +GD G + D + Sbjct: 467 --------------DFKEMTETNPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAAL 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + + R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLKIKKALKKGDQVIAQVSNE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +HSK + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I I+ ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +++ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNARILLKNN--DLIAGINKLKESVKNSQK-------ASVP 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL I + + ++ + D +K ++D L+ K + + M+ + ++ S+ V Sbjct: 737 MDLPIETINGTSVVVGVVEQGD---IKEMIDRLKNKHEKLLAMVF-KQENERISLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + K A+ + Sbjct: 793 NAP---IKAHVWANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAALNAAKN 839 >gi|269795075|ref|YP_003314530.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] gi|269097260|gb|ACZ21696.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] Length = 895 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 323/923 (34%), Positives = 494/923 (53%), Gaps = 65/923 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L +F+ GH ++PS+SL+ DP+ +FT +GMVPF TGQ+ ++ Sbjct: 1 MRTAEIRQRWLTYFEDRGHTVVPSASLVSP-DPSTLFTIAGMVPFIPYMTGQQTAPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AWD +T Sbjct: 60 TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEEAIAYAWDFITGSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +++TV+ ED+EA ++WK+++GL+ ++I DNFWS GP GPCSEI+ Sbjct: 116 KLGFDPELVWVTVFHEDDEAREIWKRVAGLTDERIQSRGMRDNFWSTGARGPAGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 D+G G G + +RYIEIWNLVFMQFE+ + + P +IDTGMGL Sbjct: 176 IDRGPEY-GAEGGPVVDEDRYIEIWNLVFMQFERADGGTKDDFPILGPLASRNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I+ +++++G Y + V RV+ DH+RS+ LI D Sbjct: 235 ERVAFLLQGVDNMYEIDEVFPVIEVAQRLSGKTYGAVEADDVRMRVVADHIRSAVMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 GI P+NEGRGYVLRR++RR++ RLLG EP + L+PA M ++YPEL + I Sbjct: 295 GIRPSNEGRGYVLRRLIRRSVRAMRLLGVEEPALPALVPASIEVMKASYPELGEGSDRIL 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQD 403 +E+E F +TL G +L+ + +L G AF+L+DT+G P+D+ + Sbjct: 355 SIALAEEEAFRRTLTAGTTILETAVGSALSTSGPGKAVLGGAEAFQLHDTYGFPIDLTLE 414 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGATQFIGYD 461 + G+ +D +F ++EQR+RARA +L SG +K + + +F+GY Sbjct: 415 MASEHGVT-VDETAFRTLMQEQRTRARADALAKRSGGADKAAYEALQTGLGAPVEFLGYT 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 S + ++ G A + VEV+ D+TPFY Sbjct: 474 DT-----------------------TARSTIVGLIVDGVPGPVATAPATVEVILDRTPFY 510 Query: 522 AEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQL D G + G +++ DVQ +G+ VH V G++ S TID R Sbjct: 511 AEAGGQLADQGTIVLDGGGTIEVDDVQAPIKGLSVHRGRVVDGVVTMGESGTATIDTARR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + +S HSATH++H AL LG +Q GS P +RFD S+ + + L IE+ VN Sbjct: 571 KAISRAHSATHMIHKALQESLGKDATQAGSENAPSRIRFDFRSSQAVPTGALAEIEERVN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 +A++L V ++MN ++A A GA AL G KY DRVRVVS+ GG S LC GTHV Sbjct: 631 TQLAEDLEVTEQVMNIDEARALGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVK 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +G++ L+ ++ E+SI +G+RR++A+ G A + + L L V + R+ Sbjct: 687 RSGQLGLVTLLGEASIGSGVRRVDALVGDGAYGFQAKEHALVGQLTGMLNVRTEELPDRI 746 Query: 761 EEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMD 814 + ++ + A + S + D ++H EV + +L+++ Sbjct: 747 GGLITRLKEAEKELAAVRQGQLLAAAGQLAASAEMVGDARVVTHDAGEVASADDLRALAL 806 Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 ++ ++ ++ + G+SK++ V++ A + ++ VLGGGG GG+ Sbjct: 807 DVRGRLGESAPTVVAVAGVSKDRPLVVVVTNATARERGLKAGAFVKAASGVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVAS 894 MAQ GG + A+AG+ Sbjct: 866 DDMAQGGGQDVTAVPAALAGLRD 888 >gi|195473021|ref|XP_002088795.1| GE11031 [Drosophila yakuba] gi|194174896|gb|EDW88507.1| GE11031 [Drosophila yakuba] Length = 966 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 304/973 (31%), Positives = 456/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT+ L + RLY+T + DE E ++W + GL + I+ + DNFW M E Sbjct: 121 LTQRLSLPKDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + G + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E SGQK +V Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVSK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E +++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776 + + LK + +V E+I +E R L K Sbjct: 772 QEIIR-LKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830 Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 R L+ V + + + + ++ K L + + ++ ++ M Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEK 949 Query: 885 ADQAIAGVASFLK 897 D+ + + F + Sbjct: 950 VDEIVQLASKFAQ 962 >gi|6176442|gb|AAF05593.1|AF188718_1 alanyl-tRNA synthetase [Drosophila melanogaster] Length = 966 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 301/973 (30%), Positives = 454/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT+ L + RLY+T + + D E ++W + GL + I+ + DNFW M E Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L S++ + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLSMPSKRALVPQPYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E SGQK +V Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD + S+ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMPSSRCPR 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 +++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 RSSLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776 + + LK + +V E+I +E R L K Sbjct: 772 QEI-VRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830 Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 R L+ V + + + + ++ K L + + ++ ++ M Sbjct: 831 KERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949 Query: 885 ADQAIAGVASFLK 897 D+ + + F + Sbjct: 950 VDEIVQLASKFAQ 962 >gi|325690091|gb|EGD32095.1| alanine--tRNA ligase [Streptococcus sanguinis SK115] Length = 872 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 322/915 (35%), Positives = 489/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + F Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE +G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDVAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|322372372|ref|ZP_08046908.1| alanine--tRNA ligase [Streptococcus sp. C150] gi|321277414|gb|EFX54483.1| alanine--tRNA ligase [Streptococcus sp. C150] Length = 872 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 323/918 (35%), Positives = 493/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++LIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHAVEPSANLIPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS +F I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDNMSFKVIADHIRSLAFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGKIMESYYPEVLEKKDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L++L K + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F+ Y+ Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YED--- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + IV + SGQ +VF+QTPFYAE G Sbjct: 466 --------------------EAAESRLSVIVADDARHDTVNSGQ-ALLVFEQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + V ++A H + G L + L ID+ R ++ Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQPLHTVEVEGELVVGANYKLEIDHTRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G+H Q GS + LRFD TH + +TS EL++IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIIGNHAVQAGSLNEQEFLRFDFTHFEAVTSEELRAIEEQVNEEIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + PV T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T E Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ LQ +A K + + V +++ + D+ L++ D ++ Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L EK ++ ++D +A ++ ++ A ++ G GGG+P MA +G Sbjct: 800 ADYSDVLVLAAHIGEKVNVLVASKSKD----VHAGNVIKVLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + N ++ VA L Sbjct: 855 GSDANGIQDLLSAVAEQL 872 >gi|238855615|ref|ZP_04645916.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3] gi|260665325|ref|ZP_05866173.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|282933011|ref|ZP_06338405.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] gi|313473100|ref|ZP_07813584.1| alanine--tRNA ligase [Lactobacillus jensenii 1153] gi|238831759|gb|EEQ24095.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3] gi|239528663|gb|EEQ67664.1| alanine--tRNA ligase [Lactobacillus jensenii 1153] gi|260560829|gb|EEX26805.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|281302865|gb|EFA95073.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] Length = 878 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 321/920 (34%), Positives = 501/920 (54%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R +L+FF+++GH +LPS SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD+ +LY TVY +D ++ ++W+K +G+ D II++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLDKDKLYCTVYPKDVDSQRVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ E P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I +E+++ KY + V ++I DH+R+ SF I D Sbjct: 233 RVLSILQDAPTNFETDLFMPMIHETEKMSAGKKYATNKEDDVAFKIIADHVRAVSFAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE+++ I+ Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKVMESHYPEVLKQAPFIQ 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RFG TL+ GL LLD ++ D+ ++G AFKL+DT+G P ++ + Sbjct: 353 KVIKNEEDRFGATLESGLTLLDDLIEKASANDDKTISGKDAFKLFDTYGFPYELTFEAAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F++ +E Q+ RAR L S + +L ++F Sbjct: 413 DKGLK-VDKAGFDKEMEAQKERARKARGDLQSMGRQD--ETLMNIKDKSEF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 461 --------------EYGVYEEKHAKLIDIVVNDKLVDKA-DGESATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID R L Sbjct: 506 QVADHGDIYDQDGDLVAKVIDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAHRREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHL+H AL +LG H Q GS + PD LRFD T P+T E++++E VN I + Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+ V T I + E GA AL KY D+VRVV V S CGGTH ++T +I Sbjct: 626 NIEVKTTITDPETGKKMGALALFNGKYGDKVRVVQV-----NDFSIEFCGGTHCANTAQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SE +I AGIRRIEA+T ++A +L +D L+ + +K ++ ++ + Sbjct: 681 GIFKIISEQAIGAGIRRIEAVTSEKAYEYLANRDALLEEIKKEVKATKAEDIKTKITSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE Q ++ + ++N S ++ + ++ I + +L+ + D + Sbjct: 741 EELHASQKKASELESEINAAKASDIFENVQEVNGLKVIAAIANVNGMNDLRELADNWKSS 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + + KA+++I +T+ LD+ A +L +++A + GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLA-CANDGKANMVISLTDAALDKGLKAGNLIKVAAPIFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N AIA V + + K Sbjct: 859 GKNPAGLKDAIAAVINEINK 878 >gi|312864171|ref|ZP_07724405.1| alanine--tRNA ligase [Streptococcus vestibularis F0396] gi|311100172|gb|EFQ58381.1| alanine--tRNA ligase [Streptococcus vestibularis F0396] Length = 872 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 321/916 (35%), Positives = 488/916 (53%), Gaps = 68/916 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS +F I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L++L K L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F+ Y+ Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQERARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + IV + SGQ +VF+QTPFYAE G Sbjct: 465 -------------------AETAESHLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + V ++A H + G L + L ID+ R ++ Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHTRRHRVM 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H Q GS + LRFD TH + +T EL++IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + PV T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T E Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ LQ +A K + + V +++ + D+ L++ D ++ Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L E K +VL+ +A ++ ++ A ++ G GGG+P MA +G Sbjct: 800 ADYSDVLVLAAHIGE-KVNVLVASK---SKGVHAGNVIKVLAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVAS 894 G + N + VA Sbjct: 855 GSDANGIQDLLLAVAE 870 >gi|17861846|gb|AAL39400.1| GM03058p [Drosophila melanogaster] Length = 966 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 301/973 (30%), Positives = 456/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT+ L + RLY+T + + D E ++W + GL + I+ + DNFW M E Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + TG + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E SGQK +V Sbjct: 474 E-QG-VPPTNDTFKYKYDAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E +++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQGN---------VVGRVEEIWEE-----------------YRKLQLIHAK 776 + + LK + N V + E+ E+ + L+ Sbjct: 772 QEI-VRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830 Query: 777 RKLQLNV---------EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 ++ L C + + + ++ K L + + ++ ++ M Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949 Query: 885 ADQAIAGVASFLK 897 D+ + + F + Sbjct: 950 VDEIVQLASKFAQ 962 >gi|327458679|gb|EGF05027.1| alanine--tRNA ligase [Streptococcus sanguinis SK1057] Length = 872 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ K IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G G+++ L + +++G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAQGIVADLKEKGQTVISGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESTF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE +G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + + S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPIALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + ++ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQDQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV + K +VL +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGD-KVNVLAASK---TKEVHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|170039921|ref|XP_001847766.1| alanyl-tRNA synthetase [Culex quinquefasciatus] gi|167863508|gb|EDS26891.1| alanyl-tRNA synthetase [Culex quinquefasciatus] Length = 967 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 294/969 (30%), Positives = 461/969 (47%), Gaps = 89/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 IR FL+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 6 TAKQIRNIFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSK 65 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT Sbjct: 66 WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDR 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L RLY+T + + D E +W K+ G+ + I+ + DNFW M ETGPC Sbjct: 126 LKLPSDRLYVTYFGGHPESGLEPDLECRDIWLKL-GVKEEHILPGSMKDNFWEMGETGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ FD+ + + +EIWNLVF+QF ++ +LPK ID GMG Sbjct: 185 GPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +V+Q+K +NYD D+F L QA ++ TG + +RV+ DH R Sbjct: 244 YERLVSVIQDKRSNYDTDVFVPLFQAIQKGTGAPDYQGRVGAEDVDGVDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G +PE Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFATLVDTVVELLGDTFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G P+D Sbjct: 364 VKKDPQHIKNIINEEEQQFLKTLSRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQF 457 + + + + ID+ + +A + ++ + + L+EK T Sbjct: 424 LTGLMAEEKNMT-IDMEGYEKAKHQSYIISQGKEKSKTATVDLDVHAISELQEKKVPT-- 480 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 F + + + V A+ V+E +GQ+ V+ D+ Sbjct: 481 ------TNDTFKYHYKAESTDPLAAYVFEPCTGKVLALRYNNAFVDEVQAGQECAVILDK 534 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ D G + +V G +V H V G+LR + +D Sbjct: 535 TNFYAESGGQIYDQGYLLKVNDESTEFNVNLVYNRGGYVLHIGVVEGVLRVGDEVACHMD 594 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R+ NHSATH L+H+L +LG Q GS + P+ LRFD T+ +T ++ E Sbjct: 595 VVRRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKAAMTIEQVAEAE 654 Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 +++ +N+ V + G ++ Y D VRV+S Sbjct: 655 RLTREVVKKNMQVYAKESKLASAKAIKGLRSVFDEVYPDPVRVISFGVPVEDLEANPEGV 714 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ +G ++ I +E +I GIRRI A+TG A L + Sbjct: 715 AGTETSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEAIKALKKTELLEGE 774 Query: 745 LASFLKVSQG---------NVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLS 787 L + LK + V ++ E+ E+ +K ++ + + L+ ++D Sbjct: 775 L-NALKATIDADKTGADSREHVKKIVELNEDVSQAVIPYVKKDEIRNQLKSLKKTLDDKE 833 Query: 788 --------------CHKI----ADVNFMSHIISEV-DSKELKSVMDALQK-KIQSGIIML 827 ++ D F+ H + ++K L S + ++K ++ + + Sbjct: 834 RAARAAVATTVVEAAKELCAANKDAPFIVHRLEAFSNTKALDSALKEVRKLNVEQSALFV 893 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 KK L V + +++ A + + + GG GGG+P AQ+ G +K + Sbjct: 894 SSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM-GGKGGGKPESAQASGGAFDKVE 952 Query: 887 QAIAGVASF 895 + + +F Sbjct: 953 EILELARAF 961 >gi|295396122|ref|ZP_06806305.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294971063|gb|EFG46955.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 884 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 323/916 (35%), Positives = 489/916 (53%), Gaps = 56/916 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I+ +LEFF+ GH ++PS+S+I +DP+++F +GMV F TG+E + Sbjct: 1 MKTAEIKRRWLEFFESKGHTVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFK AI +AW+LLT Sbjct: 60 TSVQKCVRTA----DIEEVGQTTRHGTFFQMNGNFSFGDYFKREAISMAWELLTTLEDKG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D L++TV+ +D + LW + + + ++I DNFW + GP G CSEI+ Sbjct: 116 GLGFDPNLLWVTVHQDDAASIDLWLEETSMPRERIQMRGNEDNFWHTGQPGPGGYCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 FD+G G G + +RYIEIWNLVFM+FE + + + LP +IDTGMGL Sbjct: 176 FDRGPAY-GKEGGPVADEDRYIEIWNLVFMEFELSEVRTKVDFDIKGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A + Q N Y+ID +I+ +E+++G Y ++ V RV+ DH+RS+ +I D Sbjct: 235 ERVAFLKQGVENMYEIDEVYPVIKKAEELSGRAYGTNHDDDVRMRVVADHVRSALVIIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR++ RLLG T+P++ HLLP M +YPEL I Sbjct: 295 GVRPGNEGRGYILRRLLRRSIRAMRLLGVTQPVLPHLLPVSKDAMKQSYPELDTDFDRIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + +E+ F +TL+ G LL ++ +GK ++G VAF L+DTHG P+D+ ++ Sbjct: 355 KIAYAEETAFLRTLESGTQLLTRTVAEVGKGGTIDGAVAFTLHDTHGFPIDLTVEMAHEA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G +D+ F +EEQR RA+A + G +S + G ++F+GYD L Sbjct: 415 G-VEVDVDGFKAHMEEQRQRAKADAKSKKGGGANLTAYSHLLEAGTSEFVGYDNLNTL-- 471 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V+ I++ GE V A +G V+VV D TPFYAE+GGQ Sbjct: 472 ---------------------ATVRGIIKDGEAVPVAHAGDTVDVVLDITPFYAESGGQT 510 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G ++ ++TDVQ G+ H VE G L T + +D +R Q HS Sbjct: 511 ADIGHLTGPDLKARVTDVQNILAGLPTHKVTVETGELETGALITAQVDPDHRYQAQQAHS 570 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LGS+ +Q GS P LRFD ++ + ++ A + IE+ N + N Sbjct: 571 ATHLIHAALREVLGSNATQAGSLNNPGYLRFDYSYPEALSPAARQEIEECANTAVRDNFE 630 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + E+A SGA AL G +Y + VRVV + G S LCGGTHV+ T EI + Sbjct: 631 VGYDFLPFEEAKKSGAMALFGERYPEIVRVVDI----NGTWSRELCGGTHVTRTAEIGPI 686 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + SE+S+ +G RRIEA G A L + + L+ LKV V RV + + + Sbjct: 687 SLTSEASVGSGTRRIEASVGLDAMKQLARERSTVAQLSELLKVPGPEVYERVTGLMDRIK 746 Query: 769 KLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQS 822 + + A + + S K+ ++ + +V ++ +++S + ++ ++ Sbjct: 747 EAERTIAHLNQEKVLARATDAAASAQKLGPATVVTTELGDVANAADVRSFVLDVRNRLND 806 Query: 823 GIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ++ + K +V+I V + A L + K LGGGG GG+P +AQ GG Sbjct: 807 PAHVIAAVGLANGKPAVVIAVGPEAQKAGLKAGALVTSACKTLGGGG-GGKPDLAQGGGQ 865 Query: 881 NGNKADQAIAGVASFL 896 + K QA V + Sbjct: 866 DATKVSQAFQDVRDQV 881 >gi|24582809|ref|NP_523511.2| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|45552267|ref|NP_995656.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster] gi|75027177|sp|Q9VLM8|SYAC_DROME RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|7297398|gb|AAF52657.1| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|45445248|gb|AAS64737.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster] Length = 966 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 304/973 (31%), Positives = 457/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT+ L + RLY+T + + D E ++W + GL + I+ + DNFW M E Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + TG + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E SGQK +V Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E +++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776 + + LK + +V E+I +E R L K Sbjct: 772 QEI-VRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830 Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 R L+ V + + + + ++ K L + + ++ ++ M Sbjct: 831 KERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949 Query: 885 ADQAIAGVASFLK 897 D+ + + F + Sbjct: 950 VDEIVQLASKFAQ 962 >gi|323465940|gb|ADX69627.1| Alanyl-tRNA synthetase [Lactobacillus helveticus H10] Length = 894 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 321/920 (34%), Positives = 489/920 (53%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 16 MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 75 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 76 HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 131 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF Sbjct: 132 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 187 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ + P +IDTGMGLE Sbjct: 188 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 247 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E++T KY + ++I DH+R+ SF IAD Sbjct: 248 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 307 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 308 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIE 367 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +++E+ERF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 368 NVIQNEEERFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 427 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F+ ++ Q+ RAR L S + + +L + F Sbjct: 428 DAGLK-VDKKGFDAEMQAQKERARKARGALQSMGRQDV--TLMNIKDKSVF--------- 475 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D + + IV ++V++A G+ +VFD+TPFYAE GG Sbjct: 476 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 520 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID + R L Sbjct: 521 QVADHGNIYDQDGELVAKVTDVQHAPNDQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 580 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 581 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 640 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY +VRVV + G SS CGGTH S+T +I Sbjct: 641 AIDVKTTITTPEEGEKMGALALFDGKYGHKVRVVQM-----GDFSSEFCGGTHCSNTNQI 695 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K N++ +++ + Sbjct: 696 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPNNIIDKIDSLE 755 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q Q+N + D+ ++ + +L+ + D + Sbjct: 756 SDLHDCQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 815 Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + KA+++I + + L A DL + +A + GGGG GGRP+MAQ+G Sbjct: 816 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 873 Query: 879 GPNGNKADQAIAGVASFLKK 898 G + AI V + K Sbjct: 874 GKKPEGLNDAIKAVIEEISK 893 >gi|315503215|ref|YP_004082102.1| alanyl-tRNA synthetase [Micromonospora sp. L5] gi|315409834|gb|ADU07951.1| alanyl-tRNA synthetase [Micromonospora sp. L5] Length = 893 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 334/911 (36%), Positives = 494/911 (54%), Gaps = 72/911 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I+ FL F+ NGH ++PS+ L +DP L+F N+GMV F F GQ+ P Y Sbjct: 1 MKTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK AI LAWDL TK Sbjct: 61 TSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAG 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD R++ TVY +D+EA+ +W+ +G+ A++I+R DNFWSM GPCGPCSE++ Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230 +D+G G G + +RY+E WNLVFMQFE+ + P +IDTGMGL Sbjct: 176 YDRGPAY-GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA++LQ N Y+ID K ++ + ++TG +Y + V RVI DH+R Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 +S LI DG+ P+NEGRGYVLRRIMRRA+ RLLGY + + LLP M +YPEL Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPL 398 + I + +E++ F TL G +LD ++ L+GD AF+L+DT+G P+ Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKAALSGDKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457 D+ +I +GL +D F + + +QRSRA+A + +G T+ + S+ + G +F Sbjct: 415 DLTLEIAAEQGL-QVDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVEF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY L S V+A++ G V AV G +E+V D Sbjct: 474 TGYTEL-----------------------SRESRVRALLSGGAAVSAAVEGDTIELVLDT 510 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R+ + ID Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEIDV 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L +E Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVEQ 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+++ +L V + ++E+A GA AL G KY +RVRVV V G ++ LCGGT Sbjct: 631 QVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+ + ++ L+ I+SE+S+ +G+RRIEA+ G A L + + LA +V V Sbjct: 686 HVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQVA 745 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811 RVE+ + R + K + Q L + DV ++++ + ++++ Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAKDVRGVAYVGTEAPEGAAANDVRT 805 Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +I ++ V KAS+++ V + R +A DL + + G G Sbjct: 806 LAQEIRGRIDAARPAVVAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS----GRG 861 Query: 869 GGRPHMAQSGG 879 GG +AQ GG Sbjct: 862 GGSDDLAQGGG 872 >gi|296394106|ref|YP_003658990.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985] gi|296181253|gb|ADG98159.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985] Length = 892 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 328/921 (35%), Positives = 482/921 (52%), Gaps = 62/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL F KNGHEL PS+SLI +DP L+F N+GMV F F GQ P + Sbjct: 1 MRTAEIIERFLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRL 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKERAIQLAW LLT Sbjct: 60 TSIQKCVRT----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKERAIQLAWTLLTSSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL+ TVY++D+EA LWKK++GL +++ R DN+WSM GP GPCSEI+ Sbjct: 116 GYGFDPERLWATVYEDDDEAITLWKKVAGLPDERVQRRGPADNYWSMGIPGPSGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + +RY+EIWNLVFMQ E + + LPK +IDTGMG+ Sbjct: 176 YDRGPEY-GADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ D+ + +I +EQ+TG +Y + RVI DH R++ LIA Sbjct: 235 ERVAFLLQGVDNVYETDVVRPVISVAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIA 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + ARLLG TE L+ + + M YPEL I Sbjct: 295 DGVNPGNDGRGYVLRRLLRRIVRAARLLGATELATPALVAQVVSSMSPMYPELSHEAARI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E T E+ F T+D G L + V + +I+ G AF L+DT+G PL++ ++ Sbjct: 355 ERTAAGEEHAFRNTIDSGSKLFEQVAAGALGSSRKIIPGTEAFALHDTYGFPLELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D F Q + EQR RA+A + ++ + T+F G+D L Sbjct: 415 REVGLE-VDQEGFAQLMAEQRRRAKADAKSRKQAHEDQSAYQALLDGPPTEFTGFDELSS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + +V G++ E +GQ+ +++ D+TP YAE+G Sbjct: 474 -----------------------FGTILGVVVDGQLANEVRAGQEAQIILDRTPLYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQL DTG G +++DVQK A+ +F H V G T + +D + R + Sbjct: 511 GQLADTGSISAPGAFAEVSDVQKIAKRLFAHRVKVVEGAFATGQEVTAQVDSKWRHGANQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS THL+H AL +LG +Q GS P LRFD ++ + IE V + + Sbjct: 571 GHSGTHLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPQAKQEIESVVGEAVET 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + PV T + + + A A GA AL G Y +RVRVV + GG S LCGGTHV S+ ++ Sbjct: 631 DYPVNTFVTDIDRARAMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVPSSAKV 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + ++ ESS +G RR+EA+ G AR HL + L ++AS + +V + E Sbjct: 687 GPVVLLGESSTGSGTRRVEALVGYDAREHLAKERALLAAVASAVGAPAPEAPDKVRALVE 746 Query: 766 EYRKLQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + L+ A++ + S ++ + + +EVDS +L+ + ++++ Sbjct: 747 RVKTLEREIARQAQAQARAQAGNLAQSASPVRLCSGAVVEFVSAEVDSDDLRGLAASMKE 806 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875 S + L S E K + ++ T+ + A +L R A + G GGG+ +A Sbjct: 807 AFGSRAAVAALFHKSGE-KVAFAVLATKAANELGAKAGELLRAVAPAVN-GRGGGKDDLA 864 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q G + + A A + + Sbjct: 865 QGSGTDPSAVPAAQAKLREEI 885 >gi|118617374|ref|YP_905706.1| alanyl-tRNA synthetase [Mycobacterium ulcerans Agy99] gi|205830158|sp|A0PPG6|SYA_MYCUA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118569484|gb|ABL04235.1| alanyl-tRNA synthetase AlaS [Mycobacterium ulcerans Agy99] Length = 901 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 312/921 (33%), Positives = 461/921 (50%), Gaps = 72/921 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L+ TVY +D+EA LW++++GL AD+I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G E RY+EIWNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPDYGPEGGPVVNED-RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ DL + +I Y + V +R+I DH R+++ LIA Sbjct: 235 ERVALILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIA 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LL ++ L+ + MG +YPEL I Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDSDRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L D V + +++G AF L+DT+G P+++ ++ Sbjct: 355 NRIAVAEETAFNRTLASGSRLFDEVAGATRSSGVSVVSGSDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D F + + +QR RA+A + + + G T+F G+D L Sbjct: 415 SEAGLT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-----QKVEVVFDQTPF 520 + + I G+ V G +VE+V D+TP Sbjct: 474 -----------------------EARILGIFVDGKRVPVVAHGQAVDADRVELVLDRTPL 510 Query: 521 YAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 YAE+GGQ+ D G G R +TDVQK A+ +++H VE G +V D Sbjct: 511 YAESGGQIADVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAAD 570 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R+ + HS TH++H AL +LG + Q GS P LRFD P+T + IE Sbjct: 571 AGWRKGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIE 630 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + N + + V T E A A GA AL G Y D VRVV + GG S LCGG Sbjct: 631 EVTNQAVQADFAVHTFTEQLEKAKAMGAMALFGECYPDEVRVVEI----GGPFSIELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+++ +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV V Sbjct: 687 THVATSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHII-SEVDSKELK 810 RV + E + + + +L +I +V ++ + SE+ +L+ Sbjct: 747 PARVASLVERLKAAEKELERARLASVRAAAVNAAAGAERIGNVRLVAQRMSSEMTPADLR 806 Query: 811 SVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 +++ ++ K+ S ++ L+ + ++ + A +L + A + Sbjct: 807 TLVGDIRGKLGSDPAVVALIAAPAGGESSTVPYVVAANQAAQGLGLGANELIKHLAAAV- 865 Query: 865 GGGGGGRPHMAQSGGPNGNKA 885 G GGG+ +AQ G Sbjct: 866 DGRGGGKADLAQGSGKKPAGI 886 >gi|326927213|ref|XP_003209787.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Meleagris gallopavo] Length = 968 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 316/969 (32%), Positives = 478/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SSS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASQIRQRFIDFFKENRHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTKE Sbjct: 66 LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D E ++W + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLDEGRILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRIGDRD-ASHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+++F KTL RG +LD + +G + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + + + + G Sbjct: 424 LTGLIAEEKGL-VVDMEGFEE----ERKNAQLKSQGKGAGGEDLLMLDI-YAIEELRARG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + VKAI ++ + VEE +GQ+ +V D+T Sbjct: 478 LEVTDDSPKYG----YTSDPSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L+I Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQVHLSI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ E+K + Sbjct: 594 DETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQEIKKV 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E N +I + V R G A+ Y D VRVVS+ Sbjct: 653 EGIANQMIEEAKTVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVDELLADPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---E 740 G + S CGGTH+ ++G IVSE +I GIRRI A+TG AR L + + Sbjct: 713 PAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALRKVESLKK 772 Query: 741 KLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 L +L + +KV +V + ++ E +++K +L A + L+ ++DL Sbjct: 773 LLSALDAKVKVQTAPNKDVQKEITDLSEMLATAVIPQWQKDELREAVKALKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 AD+ + + + +K L + + ML + Sbjct: 833 SKADIQKRVLEKTKQVIESHPNQPLVIMEMENGASAKALNESLKLFKTHSPQTATMLFAV 892 Query: 831 SKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E + + L V ++ A + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGRITCLCQVPQETAQKGLKANQWVQEVSA-LMDGKGGGKDISAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + F + Sbjct: 952 LRLATDFAR 960 >gi|254366760|ref|ZP_04982803.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str. Haarlem] gi|134152271|gb|EBA44316.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str. Haarlem] Length = 904 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 326/932 (34%), Positives = 482/932 (51%), Gaps = 72/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKC+R D+D VG T RH+TFF+M GNFSFGG F+ R I+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGGLFQTRVIELAWALLTNSLAAG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI+ Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G E RY+E+WNLVFMQ E+ + LP+ +IDTGMG+ Sbjct: 176 YDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A VLQ+ N Y+ DL + +I +V Y + V +R+I DH R+++ LI Sbjct: 235 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L + V S +L+G AF L+DT+G P+++ ++ Sbjct: 355 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D I F + + EQR RA+A + + + GAT+F G+D LR Sbjct: 415 AETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQ 517 + + I G+ V A GQ+VE+V D+ Sbjct: 474 -----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDR 510 Query: 518 TPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 TP YAE+GGQ+ D G G + R +TDVQK A+ ++VH VE G +++ Sbjct: 511 TPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D RR + HS TH++H AL +LG + Q GS P LRFD P+T + Sbjct: 571 AVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRT 630 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 +E+ N+ + + V T + A A GA AL G Y D VRVV + GG S L Sbjct: 631 QVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLEL 686 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHVS+T +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV Sbjct: 687 CGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPS 746 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSK 807 V RV + E R + + ++ +I +V ++ +S + + Sbjct: 747 EEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAA 806 Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 +L+S++ ++ K+ S ++ L+ + + + D A DL + A + Sbjct: 807 DLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE 866 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+ +AQ G N D A+ V S + Sbjct: 867 -GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897 >gi|324993321|gb|EGC25241.1| alanine--tRNA ligase [Streptococcus sanguinis SK405] Length = 872 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 491/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + F Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE SG ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A + ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|227432461|ref|ZP_03914448.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351782|gb|EEJ42021.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 317/928 (34%), Positives = 478/928 (51%), Gaps = 70/928 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR FL+FF GHE +PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKDLSSAEIRQMFLDFFASKGHEAVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFKE+AI AW+LLT + Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +LY+TVY +D+EA K+W++ + L I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G E ERY+EIWNLVF QF + + LP +IDTG Sbjct: 174 FDRGSSFQDLPDDDPEMYPGGENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282 MGLER+ +V Q N+D DLF +IQ +E++ Y+ + + +VI DH+R+ Sbjct: 234 MGLERVVSVFQNGRTNFDTDLFLPIIQDTERLSNQFTYDDSQDSEVNTSFKVIADHIRAI 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I DG LP+NEGRGYV+RR++RRA+ + + LG + +L+P + M S YPE+ Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEVKA 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400 I++T+ +E++RF TL GL LL+ V+ K ++G AFKL DT+G PL++ Sbjct: 354 NTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGADAFKLSDTYGFPLEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q+ GL ++ ++ A S G + L+ ++++G+ Sbjct: 414 TQEQAEDAGLIVDVDGYNDELQAQRVRARAARSNTKSMGVQNAVLTDLRVD---SKYVGW 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVF 515 + + + AI+ + E +++ A V+V F Sbjct: 471 SQTEVNH----------------------AEIVAIIGEDEQGVDALLDNADVDATVQVAF 508 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574 D TPFY+E GGQ+ D G + + + A H + + L Sbjct: 509 DVTPFYSEMGGQVPDFGDVLNTNGDVIAHVTDVQTAPNGQHIHTVDVISSFTLGDKVDLK 568 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D +S NH+ATH+L +L +LG V Q GS + P+ LRFD + P++S +L Sbjct: 569 VDMVRHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE +N IA+NL V + E A GA A+ G KY D+VRVVS+ G + Sbjct: 629 IESMMNQEIAKNLSVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753 GGTH +ST E+ L IVSES I AG+RRIEA+TG +A S Q++ LK +A+ LK + Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKE 808 + +V ++ + R +Q + +L + +++ + Sbjct: 744 TDAPEKVYDLQADLRTVQRHAESLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGMDG 803 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 L+ V D ++ S +++L ++ EK + ++ + A +L + A +GGGG Sbjct: 804 LRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHIGGGG- 862 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGRP MAQ+GG A A V++FL Sbjct: 863 GGRPDMAQAGGKKPAGIPDAFAAVSAFL 890 >gi|325688315|gb|EGD30334.1| alanine--tRNA ligase [Streptococcus sanguinis SK72] Length = 872 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 322/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + + AIV VE +G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELIAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDKAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + ++D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGDKVNVLAASKSKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|327468935|gb|EGF14407.1| alanine--tRNA ligase [Streptococcus sanguinis SK330] Length = 872 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 493/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ++RARA + GS + +L+ + F Sbjct: 416 GMT-VDRSGFEAAMKEQQNRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE +G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGKLVAQVTDVQKAPNGQPLHTVEVFAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY +VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKKVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQETNGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|19746355|ref|NP_607491.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] gi|24418690|sp|Q8P0E6|SYA_STRP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|19748550|gb|AAL97990.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] Length = 872 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 319/918 (34%), Positives = 488/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF+ AI ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIGWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ F I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALLFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKERGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R Q +A+ K + + V F++ + D+ L++ D ++ Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|125717605|ref|YP_001034738.1| alanyl-tRNA synthetase [Streptococcus sanguinis SK36] gi|205830231|sp|A3CLY3|SYA_STRSV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|125497522|gb|ABN44188.1| Alanyl-tRNA synthetase, putative [Streptococcus sanguinis SK36] Length = 872 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 322/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L +++G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVISGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 DMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE +G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|160915324|ref|ZP_02077537.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991] gi|158433123|gb|EDP11412.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991] Length = 874 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 322/915 (35%), Positives = 489/915 (53%), Gaps = 61/915 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR FL++F GH + P +SL+P NDPTL++ N+G+ K F G EKP Sbjct: 1 MKELTGNQIRQMFLDYFASKGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + Sbjct: 61 NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPQ 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + +LY++VY +D +A+++W ++ G+ I++ T NFW + E GP GP SEIF Sbjct: 117 WIGFPKEKLYVSVYTDDHDAYRIWTEVCGVDPSHILK--TEGNFWEIGE-GPGGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RYIE+WN+VF QF+ + + E LP+ +IDTGM Sbjct: 174 FDRGEEYDPEGLEEKLFFEEMENDRYIEVWNVVFSQFDCKPELDRSEYKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIA 287 GLER+ ++Q N+D DLF +I +E+ T Y+ N + RVI DH+R+ +F +A Sbjct: 234 GLERLVCLVQGGETNFDTDLFLPIIHETEKYTSCSYQVNENKMAFRVIADHIRTVTFALA 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG L +NEGRGYVLRR++RRA+ + + L M L+P + M YP L + I Sbjct: 294 DGALFSNEGRGYVLRRVLRRAVRFGKKLKIEGAFMYKLVPVVYEIMQDFYPYLGEKLDYI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + +++E+ERF TL G L+ V+ + + ++G AFKLYDT+G P ++ ++ Sbjct: 354 AKLVKAEEERFQATLSDGEKLMREVMERNKETKTIDGATAFKLYDTYGFPFELTLEMAEE 413 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G +D F +++Q+ RAR S +++ L + F+GYD Sbjct: 414 SGYF-VDKDGFQAEMKQQKERARNAREEQESMSSQSA--DLMNCTLESTFVGYD------ 464 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + V A+ + G V+E V + +V+FDQT FYAE+GGQ Sbjct: 465 -----------------ACCCDARVIALFKDGVKVDELV--EDGDVMFDQTVFYAESGGQ 505 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG I + + + K +H + G L + L +D + R ++ NH Sbjct: 506 VGDTGT-ISKAVEAVVENTVKAPHKQHLHRVHINAGALHVGDEVSLKVDEKRRAVITSNH 564 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THLL AL ++G H++Q GS ++ + LRFD TH + ++ +L++IE+ VN+ IA + Sbjct: 565 SCTHLLQSALKRVVGEHIAQAGSFVSDEYLRFDFTHFEKVSEEQLRNIENLVNEFIAGHY 624 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V M E+A SGA AL KY D VRVVS+ G S CGG HV++T EI + Sbjct: 625 SVSKVEMPIEEAKQSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGV 679 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766 I+SE SI +GIRRI A TG A D+ L ++A+ LK+ N+ +V + EE Sbjct: 680 CKIISEESIGSGIRRITAKTGYDAYKEFAAGDQMLHAIAADLKMKGIANLEAKVANVVEE 739 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +L+ A + Q+ + + + +S D LK + + L+ K + Sbjct: 740 ANELKKQLATLQSQMLALKANDLENTIEECNGHKLLFANLSGADGNALKDIANNLKAKYE 799 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ L S++K V + + DL R +A ++ G GGGRP +AQSGG + Sbjct: 800 DIVVFLASASEDKITFVAAAGKAAVANGVKCGDLVRQAA-MICDGKGGGRPDLAQSGGKD 858 Query: 882 GNKADQAIAGVASFL 896 +K ++A+ V + L Sbjct: 859 PSKCEEAMKFVKNML 873 >gi|327473314|gb|EGF18734.1| alanine--tRNA ligase [Streptococcus sanguinis SK408] Length = 872 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 325/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ K IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE SG ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A + ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|196003434|ref|XP_002111584.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens] gi|190585483|gb|EDV25551.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens] Length = 959 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 292/964 (30%), Positives = 461/964 (47%), Gaps = 84/964 (8%) Query: 3 NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 IR F++FF + H +PSSS +P +DPTL+F N+GM FK I+ G P Sbjct: 6 TSEQIRQMFIDFFVEKYNHLFVPSSSTVPHDDPTLLFANAGMNQFKPIYLGTVDPKSEMA 65 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG +FK+ +I AW+LL Sbjct: 66 TYRRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKKESIDWAWELLVD 125 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + R+Y+T + DE E +W G++ ++++ DNFW M +TGP Sbjct: 126 VYKMPAERMYVTYFGGDEKSGLQPDYETKNIWLAK-GIAPERVLPFGLQDNFWEMGDTGP 184 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D+ + + +E+WNLVF QF ++ + LP+ +DTG Sbjct: 185 CGPCTEIHYDRI-GGRDAAYLVNMDDPEVLEVWNLVFTQFNREADKSLRPLPRKYVDTGA 243 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHL 279 GLER+ +V+Q +NYD DLFK L +TG + + +RV+ DH Sbjct: 244 GLERVTSVIQGVMSNYDTDLFKPLFDKIRSLTGAREYRGLLGDADVDGIDMAYRVLADHA 303 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + I+DG P + GRGYVLRRI+RRA+ YA L + L+ ++G A+P Sbjct: 304 RTLTIAISDGGKPDSTGRGYVLRRILRRAVRYATEKLDAKPGMFAQLVNVAVEKLGGAFP 363 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + ++ + + E+ +F KTL RG + + + D +L G VA++LYDT+G P+ Sbjct: 364 EVTKDPQMVIDIINEEEAQFLKTLSRGRRMFEREVLKAK-DGVLPGFVAWRLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + +GL+ ID+ + +A ++ + +R G+ I ++K+ Sbjct: 423 DLTHIMAEEKGLS-IDMDGYEKAKQDSQELSRGKDTGVDDTVALGI-HAIKDLE------ 474 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 DL +G+++ + A+ + V E ++G + ++ D++ Sbjct: 475 --DLAIPLTDTSPKYNYESDGNGGYTIHGIAAKISALRYEKSFVNEVLTGSRCGIILDKS 532 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + V +V H + G + ++ L +D Sbjct: 533 CFYAEQGGQIYDLGFIVNSDDEDTEFKVTDVQIMGGYVLHVGITEGTFKVGDTVQLQVDS 592 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + RR + NH+ATH+L+ AL LG Q GS + PD LRFD T +T+ ++K+ E+ Sbjct: 593 ERRRTVMNNHTATHILNFALREQLG-EADQRGSLVAPDRLRFDFTAKGAMTTQQIKATEE 651 Query: 638 NVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE-----------YED 685 V +II Q V + A G + Y D VR+VSV Sbjct: 652 IVGNIIEQKQQVFAKDATLAKASAIQGLRQVFAETYPDPVRIVSVGVSVDDLLEDPTGPS 711 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 G S CGGTH+ ++G++ I SE I GIRRI A+TG A+ + E L L Sbjct: 712 GLKTSVEFCGGTHLKNSGDMEAFVISSEEPIAKGIRRIIALTGSDAKKKVTKLQESLSEL 771 Query: 746 ASF-------LKVSQGNVVG-------------RVEEIWEEYRK-------LQLIHAKRK 778 LK + + R +E+ E +K ++ ++ Sbjct: 772 MKLGRADQTSLKAKKRQITELNDSIAAVTLQQWRKDELRETLKKVKKTIIDIEKAADSKR 831 Query: 779 LQLNVEDLS--CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEK- 834 Q VE + D++ + ++ + SK L S + + ML + E Sbjct: 832 SQEVVEKAKEIASQSKDLSAVVEVLEAGLSSKVLDSALKQFHSIAPNTAAMLFSVDSEGR 891 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 + + L V E ++ + +A D + VL G GGG+P AQ G N + A+ Sbjct: 892 RVTCLCQVPEAIMKKGLSASDWVKSVMNVLE-GKGGGKPTSAQGSGTNVAGLNNALNLAK 950 Query: 894 SFLK 897 F K Sbjct: 951 EFAK 954 >gi|296110668|ref|YP_003621049.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154] gi|295832199|gb|ADG40080.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154] Length = 893 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 328/931 (35%), Positives = 491/931 (52%), Gaps = 72/931 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKEFSSAEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ I AW+LLT + Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKDDVIPWAWELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD+ LY+TVY +D+EA K+W++ + +S D I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDKELLYVTVYPKDQEAKKIWQEKTDISNDHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G E ERY+EIWN+VF QF + + LP +IDTG Sbjct: 174 FDRGTSFQDLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSQYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-----TGMKYEGNNIVNHRVIVDHLRSS 282 MGLER+ +V Q N+D DLF +IQA+ ++ + ++ + +VI DH+R+ Sbjct: 234 MGLERLVSVFQNGRTNFDTDLFLPIIQATSELSNNFVYDSNKDSDSNTSFKVIADHIRAI 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I DG LP+NEGRGYV+RR++RRA+ + + LG + L+P + M S YPE+ + Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTTLVPIVGEIMKSYYPEISE 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDI 400 I++T+ +E++RF TL GL LL+ V+S L L+G VAFKL DT+G PL++ Sbjct: 354 NTAKIQKTIAAEEKRFNATLTGGLALLNDVISDVKLAGKTQLSGAVAFKLSDTYGFPLEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q+ GL + ++ A S G + LK ++++G+ Sbjct: 414 TQEQASDAGLTVDVVGFNEALQAQRTRARAARSTDKSMGVQNAVLTDLK---VPSKYVGW 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVF 515 + V AI+ Q E +++ AV+ ++++VF Sbjct: 471 SETAVDG----------------------AEVVAIIGQNETGIDALLQTAVANSQLQLVF 508 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D TPFYAE GGQ+ D G + D + + A H + + + L Sbjct: 509 DTTPFYAEMGGQVADFGDVLNDENTLIGKIIDVQNAPNGQHIHTVEVLSDFKLGDKVNLR 568 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D +S NH+ATH+L AL ++G + Q GS + P LRFD TH P++ A+L + Sbjct: 569 VDMARHTAVSKNHTATHMLDQALRNVIGGDIHQAGSLVEPKYLRFDFTHEGPVSEADLDA 628 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 I+ +N IA+NLPV + E A GA A+ G KY + VRVVS+ G + Sbjct: 629 IDTLINAEIAKNLPVSWLETDIETAKKMGAVAVFGEKYGELVRVVSI-----GEFNKEFD 683 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753 GGTHV++T E+ L IVSES I AGIRRIEA+TG +A + +++ LK +A+ +K + Sbjct: 684 GGTHVNATSELGLFKIVSESGIGAGIRRIEAVTGLQALALYKSEEKALKEIANAVKAQKL 743 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKE 808 V +V ++ E + Q + + QL I D ++++ + Sbjct: 744 TEVPTKVADVQTELKAAQRMIESLEKQLANAAADDVFTHIETINDHSYITAKLQVSGIDG 803 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGG 867 L+ V D ++ S I++L + K ++++ + D A DL + A +GGGG Sbjct: 804 LRQVADNWKETKPSDILVLAA-DVDGKVNLIVAASPDANAAGIKAGDLIKAIAPKVGGGG 862 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP MAQ+GG N D A A VA FL + Sbjct: 863 -GGRPDMAQAGGKNPAGIDAAFASVADFLAE 892 >gi|241956830|ref|XP_002421135.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36] gi|223644478|emb|CAX41294.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36] Length = 969 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 305/965 (31%), Positives = 464/965 (48%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S +R+TFL++F++ H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 25 TASKVRSTFLDYFKQQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK Sbjct: 85 LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T + DE EA W K G+ D I+ + DNFW M + GPC Sbjct: 145 YGLKEDRLYVTYFGGDEKQGLEPDLEAKNFWLK-VGVPEDHILPGSVKDNFWEMGDQGPC 203 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + IE+WN+VF+Q+ ++ LP IDTGMG Sbjct: 204 GPCSEIHYDRI-GGRNASDLVNMDDPNVIEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ K +NYD D+F + ++TG++ +RVI DH+R Sbjct: 263 FERLVSILQNKFSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F I DG +P NEGRGYVLRRI+RR Y R L+ + + +P Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 E+ ++E L E+ F KTLDRG L + ++ ++ L+G ++LYDT+G Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID F +A EE R ++ G + +L E Sbjct: 443 PVDLTRLMAEEAGLK-IDEDGFERAKEESREASKGSGTKDGKTLVKLDVHALSE------ 495 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515 + D V + V I + VE + ++ Sbjct: 496 -----------LDQNDTIPKTNDEFKYGLENVKAKVVGIYDGSKFVESIEDPSIQYGILL 544 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+TPFYAE GGQ DTG + DG + G +H + G L ++ T Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYAGYVLHTGNIVDGKLNVGDEIIATY 604 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD ++ + +T EL+ I Sbjct: 605 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSYKQAVTPKELEKI 664 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 E N I N V + ++ A +G A+ G Y D VRVVS+ Sbjct: 665 EAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTN 724 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDE 740 S CGGTHV+ TG+I L IV ES I GIRRI A+TG A ++ Sbjct: 725 AKWHEISIEFCGGTHVAKTGDIKDLVIVEESGIAKGIRRIVAVTGHDAHHVQKVANEFEQ 784 Query: 741 KLKSLASF----------------LKVSQGNVVGRV----------EEIWEEYRKLQLIH 774 ++ + AS LK +V+ + + I + + Q Sbjct: 785 EIDAAASLPFGVVKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKARQKEE 844 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K+ L + L+ + +SH+ ++K + ++ ++K+ +S I L+ + Sbjct: 845 TKKTLDVVNNWLNDKENVSSFLVSHVPITANAKAITEAINLIKKQDKSKSIYLLTGETD- 903 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + V+++ + + NA +LA+ ++ + GG GG+ ++ Q G + AI V Sbjct: 904 KVAHGCYVSDEAIAKGINANELAKSVSENI-GGKAGGKGNIVQGMGDKPEGINTAIEEVT 962 Query: 894 SFLKK 898 K+ Sbjct: 963 KLFKE 967 >gi|260903835|ref|ZP_05912157.1| alanyl-tRNA synthetase [Brevibacterium linens BL2] Length = 884 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 327/919 (35%), Positives = 489/919 (53%), Gaps = 58/919 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I+ +L++F+ NGH ++PS+S+I +DP+++F +GMV F TG+E + Sbjct: 1 MKTAEIKQRWLDYFEANGHAVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFNRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D++ VG+T RH TFF+M GNFSFG YFK AI+ AW LLT Sbjct: 60 TSVQKCVRTG----DIEEVGKTTRHGTFFQMNGNFSFGDYFKREAIRFAWGLLTNSVDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ L+ TV+++D E LW + + + ++I DNFW + GP G CSEI+ Sbjct: 116 GLGFDKNLLWATVHEDDLETIDLWLEETSIPRERIQPRDNEDNFWHTGQPGPGGYCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 FD+G G G + +RYIEIWNLVFM+FE + + LP +IDTGMGL Sbjct: 176 FDRGPDY-GVEGGPVADEDRYIEIWNLVFMEFELSEVRSKVDFDIAGELPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID +I+A+ +++G +Y ++ + RV+ DH+RSS +I D Sbjct: 235 ERVAFLLQGVENMYEIDEVFPVIEAASRLSGHRYGADHDADVQMRVVADHVRSSLIIIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RRA+ RLLG T ++ LLP M +YPEL I Sbjct: 295 GVRPGNEGRGYILRRLLRRAVRAMRLLGVTSEVLPELLPVSMESMKLSYPELETDFDRIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E++ F +TL+ G L + L D+ L+GDVAF L+DTHG P+D+ ++ Sbjct: 355 RIAYAEEKAFLRTLESGTQLFQNAAASLPASDKTLSGDVAFALHDTHGFPIDLTLEMASE 414 Query: 408 RGLAGIDIISFNQALEEQRSR-ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G +D F + EQR+R G G + +S + GA++F+GYD L Sbjct: 415 QG-VNVDEEGFRALMSEQRTRAKADAKAKKGGGHADLSAYSALLEDGASEFVGYDRLEAD 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S V+ IV G E GQ +++ D TPFYAEAGG Sbjct: 474 -----------------------SRVRGIVVDGLAQEVLTPGQTADLILDLTPFYAEAGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q D G G G ++ DVQ +G+ H V G + ++ +D+ +R Q S Sbjct: 511 QRADIGLIKGHGFTARVLDVQNPIKGLPAHRVEVIDGEIHVGAEVLAVVDHDHRFQGSQA 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHL+H AL ILG+H Q GS P +RFD + + + IED N + N Sbjct: 571 HTATHLVHAALREILGTHAVQAGSMNQPGYMRFDYSFPEAPSQQMRAEIEDVANLAVRSN 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + EDA SGA AL G KY + VRVV + GG S LCGGTHV S+ E+ Sbjct: 631 YEVGTEFLPFEDARKSGAMALFGEKYPNIVRVVDI----GGPFSRELCGGTHVGSSSEVG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++SE+S+ +G+RRIEA G A L + + SL+ LKV +V RV ++ + Sbjct: 687 PISVLSEASVGSGVRRIEAAVGMDAFRSLAAERSIVSSLSDMLKVPGTDVKERVGDLMSK 746 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820 + + A+ Q + + + F+ + +V ++ ++++V+ L+ ++ Sbjct: 747 LKDAEKEIARLNSQQLLASAGKFLDNAETVGSTLFVVADLGDVTNAGDIRTVVTDLRGRV 806 Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLDRFN-AVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++L + K V+I T + + A L L+ LGGGG GG+P +AQ G Sbjct: 807 NERSAVVLGIGTGNSKPVVVIATTAAAREEGHQAGKLVSLACGELGGGG-GGKPDLAQGG 865 Query: 879 GPNGNKADQAIAGVASFLK 897 G + + AIA V + L+ Sbjct: 866 GSDVSAIPSAIAAVKAALQ 884 >gi|324995376|gb|EGC27288.1| alanine--tRNA ligase [Streptococcus sanguinis SK678] Length = 872 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 322/915 (35%), Positives = 489/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + F Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEDFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 VMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE SG ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDAAGNLVAQVRDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPALLAAVAEKL 872 >gi|108804197|ref|YP_644134.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941] gi|122381811|sp|Q1AWA6|SYA_RUBXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108765440|gb|ABG04322.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941] Length = 882 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 309/919 (33%), Positives = 467/919 (50%), Gaps = 73/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF + H + PSSSLIP +DPT++ T +G+ F F GQEKP + Sbjct: 4 MKSAEIRRRFLDFFAERDHRIYPSSSLIPHDDPTVLLTTAGVQQFIPYFLGQEKPPHPRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQKC R DL+ VG H TFFEMLGNFSFG YFK+ AI AW+ LT+ + Sbjct: 64 ASVQKCFRT----QDLEEVG-DPSHLTFFEMLGNFSFGDYFKKEAIGWAWEFLTEGLGIP 118 Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSE 174 RL++T+++ DE EA + W + G+ KI + ++N+W ETGPCGPCSE Sbjct: 119 PERLWVTIFEGDENAPEDLEAKRFWME-VGVPEHKIFGLPKSENWWGPAGETGPCGPCSE 177 Query: 175 IFFDQGECIPGGLPGSS--------EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 I++D GE G P E R++E+WNLVF Q+EQ L + IDT Sbjct: 178 IYYDYGEEFGPGDPLEDARYGPGGEEGDARFLEVWNLVFNQYEQLRDGSLRPLEQTGIDT 237 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSF 284 GMGLER+A V+Q + Y+ DL+ +I+ + + TG+ R++ DH R +F Sbjct: 238 GMGLERIAAVMQGARSVYETDLYAPVIERAREYTGVALGDGEETDRALRILADHARGMAF 297 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 LIADG+ P N+ R YVLRRI+RRA A G + L + MG + EL +A Sbjct: 298 LIADGVRPGNQRREYVLRRIIRRATREAYGRFGLDAGRIASLAETVADYMGGFWGELREA 357 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I + SE RF G+ LL+ +S L G+VAF L+DT+G P+++ ++ Sbjct: 358 RDEIRRVVESEAARFIDIYHSGMRLLEAEISRLEGGR-FPGEVAFTLHDTYGFPVEVTRE 416 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +L RG +D F +A+E QR RAR G + +++ ++F+GY+ Sbjct: 417 VLAERG-ISLDEAGFRRAMERQRERAREALEGHERAVA-----AFRDREIRSRFVGYER- 469 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + AI E V +A ++ +V ++ PFYA Sbjct: 470 ----------------------EQAETRILAI----EPVPDAEG--ELYLVLEENPFYAT 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ DTG + +L++ D + + A VERG +V +I+ R+Q+ Sbjct: 502 GGGQVADTGWISSEKGQLEVVDAIPAGDYQVL-RARVERGRFEAGDEVVASINRVRRQQI 560 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATH+LH AL +LG V Q GS + PD LRFD +S +T EL +++ I Sbjct: 561 EANHTATHILHWALRAVLGKEVVQAGSYVGPDRLRFDYRYSGRVTEEELARVQELCLLKI 620 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N PV E+A GA L G KY + VRVV V+ S LCGGTHV T Sbjct: 621 TENQPVRYYTTTLEEARKLGAIMLFGEKYGELVRVVEVDG-----FSRELCGGTHVRGTA 675 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEE 762 EI I S A + RIE ITG+ A +L E + LA+ L++ + V Sbjct: 676 EIGAFKITSNRRHGADLYRIEVITGREALYYLTRAAETAERLAAELRLPGVEELPEAVSR 735 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE ++ + ++ L+ +E++ + I ++ ++ D ++L+ + D ++ Sbjct: 736 LREELQQAREELRQQALKRGLEEVGSLVENAESIDGTKVVTGRVAAADVRDLRQISDDVR 795 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ + +++ + KA ++ ++ R A D+ R +A +LGGGG GG P MAQ+ Sbjct: 796 NRVGGPVAVVLAADLDGKAVLVANFHPEVSKRVKAGDVVREAAGILGGGG-GGSPTMAQA 854 Query: 878 GGPNGNKADQAIAGVASFL 896 GG N A+ V L Sbjct: 855 GGGNLEAIPAALERVRQIL 873 >gi|319935502|ref|ZP_08009937.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1] gi|319809533|gb|EFW05950.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1] Length = 869 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 321/913 (35%), Positives = 502/913 (54%), Gaps = 65/913 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL++F+ GH + P +SLIP NDPTL++ N+G+ K F G E+P Sbjct: 1 MKQLTGNQVRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEQPAC 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + Sbjct: 61 HRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEDAIPFAWEFLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ +LY+TVY +D++A+++W ++ + I++ T+ NFW + E GP GP SEIF Sbjct: 117 WIGFDKEKLYVTVYTDDDDAYRIWTEVCHVDPSHILK--TDGNFWEIGE-GPGGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 +D+G E +RYIEIWN+VF QF+ ++E LP+ +IDTGM Sbjct: 174 YDRGVEYDPDGLGEKLFFEELENDRYIEIWNVVFSQFDCNPTIDRKEYKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+ +++Q N+D D F +I A+E++T ++Y +N + +RVI DH+R+ +F ++D Sbjct: 234 GLERLVSIIQGGETNFDTDFFLPIIHATEEMTNVRY-EDNKMAYRVIADHIRTVTFALSD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G L N GRGYVLRRI+RRA+ Y + +G M L+ + M Y L + Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKKIGIDHSFMYKLVYVVADIMKEFYDYLPAKADYVS 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E+E F KTL G LL+ +L + L+G AFKLYDT+G PL++ +I Sbjct: 353 GLVKKEEEAFHKTLSNGEKLLNQMLKKTIDQQ-LDGKDAFKLYDTYGFPLELTVEIAEET 411 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G +D F ++ Q+ RAR S +++K L +QF+ YD Sbjct: 412 GFT-VDEAGFKAEMKAQQVRARNARGDNESMSSQK--PDLMAFDTPSQFV-YDH------ 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + +++ V A G +E + + E++ DQT FYAE GGQ Sbjct: 462 -----------------SPITAKVIATFIDGVKCDEITT--QGEIILDQTTFYAEMGGQC 502 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG + L +T V + +H ++ G ++ L+L +D R + NH+ Sbjct: 503 ADTGTMSNETTLLDVTYVSRAPRLQHLHVIKIKNGSVKVGDELILKVDAHKRALIQNNHT 562 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL T+LG HVSQ+GS + + LRFD TH + +T E++ +ED VN+ I L Sbjct: 563 ATHLLQKALKTVLGEHVSQSGSYVDAERLRFDFTHPQKMTDEEIRKVEDQVNEQIFNGLN 622 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V M++++A+ SGA AL KY D+VRVVSV G +S LCGG HVS++ +I L Sbjct: 623 VQIEFMSKDEAMHSGAMALFDEKYGDQVRVVSV-----GDYSKELCGGCHVSNSAQIALF 677 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 I SE S+ +GIRRIEA+T Q+A + +E +++++ K+ ++ +V +V + +E Sbjct: 678 KIESEESVGSGIRRIEAVTAQKAYQSMKKSEETIQTISELFKLKNRNEIVEKVTQFIDET 737 Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +++ + +LN + +I V F+ ++ D+ K + L+ ++ + Sbjct: 738 HEVKKERDQYLDKLNSIEAKEKSKNIEEINGVQFL-YVSESKDASIAKQMTFELRDQLTN 796 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+++LV E K S + +T ++ + A DL ++ + + GG GGG+P AQ G P+ Sbjct: 797 GVVVLVS-EYEGKTSYFVGLTASMVKNGYKAGDLVKMINE-VTGGRGGGKPDFAQGGCPS 854 Query: 882 GNKADQAIAGVAS 894 + AI + S Sbjct: 855 QEHINDAIKQIKS 867 >gi|306833055|ref|ZP_07466186.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338] gi|304424764|gb|EFM27899.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338] Length = 888 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 323/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 17 MKQLTSAQVRQIWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 76 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT + Sbjct: 77 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 132 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIF Sbjct: 133 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 188 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 189 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 248 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I Sbjct: 249 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 308 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + I Sbjct: 309 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIKETFLYKLVPTVGKIMESYYPEILEKQDFI 368 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G +LD +L+ L + + G FKLYDT+G P+++ +++ Sbjct: 369 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 428 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G ID F A++EQ+ RARA+ + GS + +L + F Y+ Sbjct: 429 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 481 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S + I+ E E GQ +VF +TPFYAE G Sbjct: 482 --------------------EVLDSTMSVIIADNERTEAVSEGQ-ALLVFAKTPFYAEMG 520 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G D + +KA H + L + L ID + R ++ Sbjct: 521 GQVADHGVIKNDKGDIVARVTDVQKAPNGQALHTVEVLASLSVGTTYTLEIDSKRRHRVI 580 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 581 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 640 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T E Sbjct: 641 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 695 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + Sbjct: 696 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 755 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ KLQ +A+ K + + V +++ ++ D+ L++ D ++ Sbjct: 756 QEQLHKLQKENAELKEKAAAAQAGDVFEDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 815 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L EK ++ +D +A +L + A ++ G GGG+P MA +G Sbjct: 816 KDYSDVLVLAAAIGEKVNVLVASKAKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 870 Query: 879 GPNGNKADQAIAGVASFL 896 G + K +A VA L Sbjct: 871 GSDAAKIADLLAAVAENL 888 >gi|297748879|gb|ADI51425.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-EC] gi|297749759|gb|ADI52437.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-LC] Length = 924 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 327/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 50 MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 109 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 110 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 169 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 170 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 227 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 228 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 287 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RG Sbjct: 288 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 347 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 348 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 407 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + ID+ +F Sbjct: 408 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 466 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R ++ + F + ++FIGYD L F Sbjct: 467 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 514 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 515 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 561 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL Sbjct: 562 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 621 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D Sbjct: 622 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 681 Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 ++S G KY D VRVVS S LCGGTH +TG+I I E ++ Sbjct: 682 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 735 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L A Sbjct: 736 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 795 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 796 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 855 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + VL V++DL R A L GG GG+ AQ Sbjct: 856 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 901 >gi|328945496|gb|EGG39647.1| alanine--tRNA ligase [Streptococcus sanguinis SK1087] Length = 872 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAIPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVIKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + AIV VE +G ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A + ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|195155623|ref|XP_002018701.1| GL25810 [Drosophila persimilis] gi|194114854|gb|EDW36897.1| GL25810 [Drosophila persimilis] Length = 966 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 300/973 (30%), Positives = 449/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKFLTAKEVRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEF 120 Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT L + RLY+T + DE E +LW + GL + I+ + DNFW M E Sbjct: 121 LTNRLHLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L +A + G + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG I+ GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + + E + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKS-----LEIDMAGYEAAKQNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E +GQK +V Sbjct: 474 E-QG-VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIVALRFENQFVNEISNGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELQLH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDEERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E D++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 TEQLTKDMVYKNVPIYAKESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A + + Sbjct: 712 AEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFE 771 Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAKRKLQ 780 + + LK + +V E+I +E R L K Sbjct: 772 QEIVK-LKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDD 830 Query: 781 LNVEDLSCHKIA-------------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 + + N + + ++ K L + + ++ ++ M Sbjct: 831 KERSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N ++ Sbjct: 891 FFSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDR 949 Query: 885 ADQAIAGVASFLK 897 ++ I F + Sbjct: 950 VEEIIQLATKFAQ 962 >gi|329116323|ref|ZP_08245040.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020] gi|326906728|gb|EGE53642.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020] Length = 872 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 322/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKKLTSAEIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y D +++ W + G+ +I + +NFW + GP GP +EIF Sbjct: 117 WFDFPKEKLYMTYYPADTDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGESFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+ V+Q N++ DLF +I+ E ++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREVETLSGKTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG + + L+ + M S YPE+++ K I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINQTFLYKLVMVVGQIMESYYPEILEKKDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L ++ + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDIFKLYDTYGFPVELTEEMA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLANITELSEFN-YDR--- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + IV E E GQ +VFDQTPFYAE G Sbjct: 466 --------------------EKLEGQLSVIVVDNERSEAVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + D + + +KA H + L +L +D++ R + Sbjct: 505 GQVADHGVILNDNGEVIANVIDVQKAPNGQALHTVEVLANLSVGTKYMLKVDHKRRFAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS + LRFD TH + +T+ EL+ IE+ VN I Sbjct: 565 KNHTATHLLHAALHNIIGKHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + E A + GA AL G KY VRVV + G +S LCGGTHVS+T E Sbjct: 625 NAIKVQTIESDVETAKSMGAMALFGEKYGKLVRVVVI-----GDYSVELCGGTHVSNTSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+T ++A +++ LK +AS +K Q V +V + Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTSKQAFEAYRKEEDALKEIASTIKAPQIEQVPTKVASL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E+ R+LQ A+ K + ++ +++ +S D+ L++ D ++ Sbjct: 740 NEQVRELQKEVAELKEKAAAAQAGDVFKDVKEVNGHTYIATQVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S I++LV EK ++ +++L +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDILILVAAIGEKVNVLVASKSKEL----HAGNVIKALAPIVS-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + + V + L Sbjct: 855 GSDASKINDLLNEVPNQL 872 >gi|307637915|gb|ADN80365.1| Alanyl-tRNA synthetase [Helicobacter pylori 908] gi|325998103|gb|ADZ50311.1| Alanyl-tRNA synthetase [Helicobacter pylori 2017] Length = 847 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 327/892 (36%), Positives = 484/892 (54%), Gaps = 57/892 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FFQ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFEHCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTE------------------- 455 Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S+ G + + EA Q+V V+ ++TPFYAE GG +GD G + Sbjct: 456 ----CSAKALGFFDSGFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKGDEEAA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RFEIAKHHSATHLLQSALREVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RR Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKILLKNN--DVIAGINKLKESVKNSQK-------APV 735 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 DL KI V+ + ++ + D +K ++D L+ K + + M+ E ++ V Sbjct: 736 PMDLPVEKIHGVSLVVGVVEQGD---IKEMVDRLKSKHERLLAMVFKKENEH-ITLACGV 791 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + K A+ + Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839 >gi|116514511|ref|YP_813417.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274757|sp|Q048Z3|SYA_LACDB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830262|sp|Q1G947|SYA_LACDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116093826|gb|ABJ58979.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126223|gb|ADY85553.1| Ala-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 877 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 323/917 (35%), Positives = 483/917 (52%), Gaps = 62/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 DLD+ +LY+TVY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLDLDKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF +F P +IDTGMGLE Sbjct: 174 YDRGQENNDVPEDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E+++ KY + ++ ++I DH+R+ SF I D Sbjct: 234 RVLSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP N GRGYVLRR++RRA R LG + L+P + M S YPE+ I Sbjct: 294 GALPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFIS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RFG TL+ GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 354 KVVKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F+ +E Q+ RAR L S ++ +L + + F Sbjct: 414 DKGLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF--------- 461 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+ ++V++A G+K ++FD+TPFYAE GG Sbjct: 462 ---------------EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + L + L ID R L Sbjct: 506 QVADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQTYKLKIDRARREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + E GA AL KY D+VRVV + S CGGTH +T +I Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SE +I AG+RRIEA+T + A +L G+ + L + + +K + ++ + Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQ 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R + +A + Q+N + D+ ++ I +L+ + D + + Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L S++K ++ + + L A DL + A + GGGG GGRP+MAQ+GG Sbjct: 801 GKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFL 896 N AI S L Sbjct: 860 KNPEGLQDAIDAAVSQL 876 >gi|238883003|gb|EEQ46641.1| alanyl-tRNA synthetase [Candida albicans WO-1] Length = 969 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 302/965 (31%), Positives = 465/965 (48%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S +R+TFL++F+K H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 25 TASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK Sbjct: 85 LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T + DE EA W K G+ D I+ + DNFW M + GPC Sbjct: 145 YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLK-VGVPEDHILPGSVEDNFWEMGDQGPC 203 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WN+VF+Q+ ++ LP IDTGMG Sbjct: 204 GPCSEIHYDRIGGRNASA-LVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ K +NYD D+F + ++TG++ +RVI DH+R Sbjct: 263 FERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F I DG +P NEGRGYVLRRI+RR Y R L+ + + +P Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 E+ ++E L E+ F KTLDRG L + ++ ++ L+G ++LYDT+G Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID F +A EE R ++ G + +L E Sbjct: 443 PVDLTRLMAEEAGLK-IDEEGFERAKEESREASKGSGTKDGKTLVKLDVHALSE------ 495 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515 + D V + V I + V+ + ++ Sbjct: 496 -----------LDQNDAIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPSIQYGILL 544 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+TPFYAE GGQ DTG + DG + G +H + G L ++ T Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYAGYVLHTGNIVDGKLNVGDEIIATY 604 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + +T+ EL+ I Sbjct: 605 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAVTAKELEKI 664 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 E N I N V + ++ A +G A+ G Y D VRVVS+ Sbjct: 665 EAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTN 724 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDE 740 S CGGTHV+ TG+I L I+ ES I GIRRI A+TG A ++ Sbjct: 725 TKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQKVANEFEQ 784 Query: 741 KLKSLASF----------------LKVSQGNVVGRV----------EEIWEEYRKLQLIH 774 ++ + +S LK +V+ + + I + + Q Sbjct: 785 EIDNASSLPFGVAKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKAKQKEE 844 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K+ L + L+ + A ++H+ ++K + ++ ++K+ ++ I L+ + Sbjct: 845 TKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSIYLLTGETD- 903 Query: 835 KASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + V+++ + NA +LA+ ++ + GG GG+ ++ Q G + AI V Sbjct: 904 KVAHGCYVSDEAIVKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGINTAIEEVT 962 Query: 894 SFLKK 898 K+ Sbjct: 963 KLFKE 967 >gi|319760313|ref|YP_004124251.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF] gi|318039027|gb|ADV33577.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF] Length = 884 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 336/915 (36%), Positives = 501/915 (54%), Gaps = 55/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R FL FF K H+++ SSSLIP ND TL+FTNSGM FKNIF G EK +++ V Sbjct: 3 KSIVDVRQEFLNFFHKKEHQIISSSSLIPENDQTLLFTNSGMNQFKNIFLGIEKVLFKRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119 T Q+C+RAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW+LLT F Sbjct: 63 VTAQRCMRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKDSAIEFAWELLTDSNWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +++IT + D E++ +W K G+S ++I+I + DNFW M GPCGPC Sbjct: 123 LSKDKIWITTHICDNESYDIWTKHIGISKKRVIKIGSKNGHYSDSDNFWKMGNIGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 SEIF+D G+ PG P + ERY+EIWNLVFMQF Q++ LP +S+DTGMGL Sbjct: 183 SEIFYDLGDKFPGVPPNNDMTASSERYVEIWNLVFMQFNQRSNGNLESLPMLSVDTGMGL 242 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+ +LQ +NY ID+FK+LI + +V +K + + VI DH+R+ +FLI DGI Sbjct: 243 ERITAILQGMCSNYLIDVFKNLIISISEVMNVK-KSIADRSLYVIADHIRACAFLIKDGI 301 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+C+ R LG L+ L + M L LIE+ Sbjct: 302 IPDNEGRGYVLRRIIRRAVCHGRKLGVNGIFFYKLVTPLISSMSYITEILCDQVDLIEKI 361 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L +E++ F TL++GL LL L L ++IL+G VAF+LY T+G PLD+ QDI + Sbjct: 362 LFNEEKLFENTLNKGLKLLRKSLIELKNNKILSGRVAFQLYSTYGFPLDLTQDICHEYNI 421 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID + F+Q + +++ +++ + I + ++ F+GY + Sbjct: 422 K-IDQLEFDQIMLKEKKQSKQLNRFCRVSGDITIPIDI-----SSIFVGYKHVTYR---- 471 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + A+ Q E V+ S + V+ D TPFY E+GGQ+GD Sbjct: 472 -------------------AKIIALFQNNEAVKIVKSNTESMVILDFTPFYGESGGQIGD 512 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + + KK I V I++ G + + ++ R+ + +NHSAT Sbjct: 513 CGYLRAESGGVFEVRNTKKYGNITVQIGILKSGKINVGEEVFAQVNPLKRKLICLNHSAT 572 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ILGSHV+Q GS I LRFD +H +T ++ S+E+ +N I N + Sbjct: 573 HLLHAALLEILGSHVTQKGSLINDRCLRFDFSHYDAMTEKQINSVENFINQQIWSNWVIT 632 Query: 651 TRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +M E A + L +YN VRVV + G SS LC GTH +TG+I L Sbjct: 633 EDLMPIESAYNNTDIIMLSKKQYNQEVRVVRI-----GNFSSELCTGTHSKNTGKIGLFV 687 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV E I AGIRRIEA T A S + + ++++ + +++ ++ + K Sbjct: 688 IVKELGIGAGIRRIEATTKDLALSIIQRKRTLIQNIIQIMHTDDDHLLNKIHALKLFSNK 747 Query: 770 LQLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ K + + + I +V + I ++ + + ++ +++ ++SG+ Sbjct: 748 LEKEIRVLKNKQETQKILSSAHEVYYIKNVPILVKQIENIELETVFYMVGCIKRHLKSGL 807 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L+ +++ VTEDL++R N++D+ + GG GGG+ AQ+ N Sbjct: 808 IVLINTRINNSIHLIVSVTEDLIERNHINSLDVVHYIMHNV-GGKGGGKSDFAQAKIDNV 866 Query: 883 NKADQAIAGVASFLK 897 + +A V L+ Sbjct: 867 INKSEFVANVKLLLR 881 >gi|322783659|gb|EFZ10997.1| hypothetical protein SINV_01057 [Solenopsis invicta] Length = 952 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 300/950 (31%), Positives = 457/950 (48%), Gaps = 65/950 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 N IR +++FF+ GHE + SSS IP +DP+L+FTN+GM FK IF G P Sbjct: 5 MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPSLLFTNAGMNQFKPIFLGTVDPNSDMA 64 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LT Sbjct: 65 KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTD 124 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 L RLY+T + D+E LW + G+ A ++ DNFW M ETGP Sbjct: 125 VLKLPADRLYVTYFGGDMKSGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ +D+ + + +EIWNLVF+Q+ ++ LPK ID G+ Sbjct: 184 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNREPDGSLKPLPKKHIDCGL 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ +V+Q+K NYD DLF L A E+ TG + +RV+ DH Sbjct: 243 GLERLISVIQDKRANYDTDLFMPLFDAIEKGTGAPPYKGKIGADDVDGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG +P N GRGYVLRRI+RRA+ YA L L+ + +G +P Sbjct: 303 RTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGDVFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I E + E+ +F KTL RG LL+ ++ L ++ GDVA++LYDT+G P+ Sbjct: 363 EVKRDPQSIIEIINEEEIQFLKTLSRGRNLLNRTIAKLESTNVVPGDVAWRLYDTYGFPI 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + +GL ID+ + + + +A+ S G ++I + + T+ Sbjct: 423 DLTQLMTEEKGLK-IDMTGYEE----AKKQAQLISQNKAGGVDDQINLDV---HAITELQ 474 Query: 459 GYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + K D KV + + V A+ + V+E SG++V ++ D+ Sbjct: 475 NQGVKPTDDSPKYDYKVTNTVQYNEYDFAPCTGTVIALRRAKAFVDEVSSGEEVGILLDR 534 Query: 518 TPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 T FYAE GGQ+ D G + D + G +H V G LR + + Sbjct: 535 TNFYAEQGGQIFDEGFLVKVDDEATEIRVKNVQVRAGYVLHIGTVGEGKLRKGDKVHTNV 594 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + RR + NHSATH L++AL +LG+ Q GS + PD LRFD T+ P+T+ +L Sbjct: 595 DTKRRRFVMANHSATHALNYALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTKQLLDT 654 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E ++I N + T+ + G A+ Y D VRVVS+ Sbjct: 655 EVATQEMIKDNKQIYTKESSLAIAKTIQGLRAMFEETYPDPVRVVSMGVSVEKLESDPLS 714 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDE 740 + S CGGTH+ T I I SE +I GIRRI A+TG A L + Sbjct: 715 KAALETSVEFCGGTHLHYTAHIGDFVIASEDAIAKGIRRIVALTGPEATKALRTSTLLQQ 774 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADV---- 794 ++ +L + S+ NV + + + L+ +R + V + Sbjct: 775 QILALKEMIANSEINVKE-CDNMRNTLKDLKKSLDDKERAAKAAVATSVVQTAQSIIESN 833 Query: 795 ---NFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD- 848 + ++ ++K L + ++ Q ML+ + K L V++ +D Sbjct: 834 PECKVLVEVMEAYSNTKALDLALKKIKAISQETSAMLISVDHNVNKIYALSSVSKSGIDE 893 Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A + + ++ G GGG+ AQ+ G N ++ ++ F + Sbjct: 894 GLKANEWVQAIVPLMK-GKGGGKAESAQASGTNIACLNEIVSKAKEFANQ 942 >gi|300811577|ref|ZP_07092061.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497437|gb|EFK32475.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 877 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 321/917 (35%), Positives = 484/917 (52%), Gaps = 62/917 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S R FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLNSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 DLD+ +LY+TVY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF Sbjct: 117 WLDLDKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF +F P +IDTGMGLE Sbjct: 174 YDRGQENNDVPEDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I A+E+++ KY + ++ ++I DH+R+ SF I D Sbjct: 234 RVLSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP N GRGYVLRR++RRA R LG + L+P + M S YPE+ I Sbjct: 294 GALPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFIS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RFG TL+ GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 354 KVVKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F+ +E Q+ RAR L S ++ +L + + F Sbjct: 414 DKGLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF--------- 461 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+ ++V++A G+K ++FD+TPFYAE GG Sbjct: 462 ---------------EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + L + L ID R L Sbjct: 506 QVADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQTYKLKIDRARREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + E GA AL KY D+VRVV + S CGGTH +T +I Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764 + I+SE +I AG+RRIEA+T + A +L + + L + + +K ++ + + ++ + Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLASRSDILDQIQAQVKATKADGIQSKIASLQ 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R + +A + Q+N + D+ ++ I +L+ + D + + Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +S +++L S++K ++ + + L A DL + A + GGGG GGRP+MAQ+GG Sbjct: 801 GKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGG 859 Query: 880 PNGNKADQAIAGVASFL 896 AI S L Sbjct: 860 KKPEGLQDAIDAAVSQL 876 >gi|68475751|ref|XP_718082.1| hypothetical protein CaO19.5746 [Candida albicans SC5314] gi|68475886|ref|XP_718016.1| hypothetical protein CaO19.13169 [Candida albicans SC5314] gi|74586350|sp|Q5A8K2|SYA_CANAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|46439761|gb|EAK99075.1| hypothetical protein CaO19.13169 [Candida albicans SC5314] gi|46439836|gb|EAK99149.1| hypothetical protein CaO19.5746 [Candida albicans SC5314] Length = 969 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 302/965 (31%), Positives = 466/965 (48%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S +R+TFL++F+K H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 25 TASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK Sbjct: 85 LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T + DE EA W K G+ D I+ + DNFW M + GPC Sbjct: 145 YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLK-VGVPEDHILPGSVEDNFWEMGDQGPC 203 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WN+VF+Q+ ++ LP IDTGMG Sbjct: 204 GPCSEIHYDRIGGRNASA-LVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ K +NYD D+F + ++TG++ +RVI DH+R Sbjct: 263 FERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F I DG +P NEGRGYVLRRI+RR Y R L+ + + +P Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 E+ ++E L E+ F KTLDRG L + ++ ++ L+G ++LYDT+G Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID F +A EE R ++ G + +L E Sbjct: 443 PVDLTRLMAEEAGLK-IDEEGFERAKEESREASKGSGTKDGKTLVKLDVHALSE------ 495 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515 + D V + V I + V+ + ++ Sbjct: 496 -----------LDQNDAIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPSIQYGILL 544 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+TPFYAE GGQ DTG + DG + G +H + G L ++ T Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYAGYVLHTGNIVDGKLNVGDEIIATY 604 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + +T+ EL+ I Sbjct: 605 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAVTAKELEKI 664 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 E N I N V + ++ A +G A+ G Y D VRVVS+ Sbjct: 665 EAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTN 724 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDE 740 S CGGTHV+ TG+I L I+ ES I GIRRI A+TG A ++ Sbjct: 725 TKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQKVANEFEQ 784 Query: 741 KLKSLASF----------------LKVSQGNVVGRV----------EEIWEEYRKLQLIH 774 ++ + +S LK +V+ + + I + + Q Sbjct: 785 EIDNASSLPFGVAKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKAKQKEE 844 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K+ L + L+ + A ++H+ ++K + ++ ++K+ ++ I L+ + Sbjct: 845 TKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSIYLLTGETD- 903 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + V+++ + + NA +LA+ ++ + GG GG+ ++ Q G + AI V Sbjct: 904 KVAHGCYVSDEAIAKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGINTAIEEVT 962 Query: 894 SFLKK 898 K+ Sbjct: 963 KLFKE 967 >gi|324990574|gb|EGC22510.1| alanine--tRNA ligase [Streptococcus sanguinis SK353] Length = 872 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 323/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + A+V VE SG ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAVVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQETNGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 858 QSAIPDLLAAVAEKL 872 >gi|195339200|ref|XP_002036208.1| GM12994 [Drosophila sechellia] gi|194130088|gb|EDW52131.1| GM12994 [Drosophila sechellia] Length = 966 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 301/973 (30%), Positives = 456/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +++FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKLLTAKEVRNAYMDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT+ L + RLY+T + + D E ++W + GL + I+ + DNFW M E Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + TG + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ SS + A+ + + V E SGQK +V Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCSSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E +++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALQKSETFE 771 Query: 743 KSLASFLKVSQGN---------VVGRVEEIWEE-----------------YRKLQLIHAK 776 + + LK + N V + E+ E+ + L+ Sbjct: 772 QEI-VRLKATIENDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830 Query: 777 RKLQLNV---------EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 ++ L C + + + ++ K L + + ++ ++ M Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949 Query: 885 ADQAIAGVASFLK 897 D+ + + F + Sbjct: 950 VDEIVQLASKFAQ 962 >gi|139473577|ref|YP_001128293.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] gi|205830227|sp|A2RDY3|SYA_STRPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134271824|emb|CAM30058.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] Length = 872 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 318/918 (34%), Positives = 489/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVITEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+GE E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++ E+E F +T+D G LD +L+ L + + L G FKLYDT+G P+++ +++ Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G ID F A++EQ+ RARA + GS + +L ++F YD Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + S + I+ E E GQ +VF QTPFYAE G Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ DTG D + +KA H + L + L I+ + R + Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ I Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L + T + E A GA AL G KY VRVV + G +S LCGGTH++++ E Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V+ + Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + R Q +A+ K + + V ++ + D+ L++ D ++ Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRIIASQVDVADAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV EK ++ T+D +A ++ + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A VA + Sbjct: 855 GSDASKIAELLAAVAETV 872 >gi|161502129|ref|YP_001569241.1| hypothetical protein SARI_00146 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863476|gb|ABX20099.1| hypothetical protein SARI_00146 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 784 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 338/820 (41%), Positives = 488/820 (59%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT F L + RL++TVY+ D+EA+ +W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYGIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRTLIEAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA EL + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQ-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERDIK-VDEAGFETAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVNGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 VE +GQ+ VV DQTPFYAE+GGQ+GD G G G + D QK H + Sbjct: 388 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVGFTFAVNDTQKYG-QAIGHLGKLS 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ + +D R ++ +NHSATHL+H AL +LG+HV+Q GS ++ LRFD Sbjct: 447 AGALKVGDVVQADVDEARRARIRLNHSATHLMHAALRQVLGAHVAQKGSLVSDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + +E++ +ED VN I +NLP+ T IM E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPSEIREVEDLVNAQIRRNLPIETHIMELEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH TG+I L I+SES AG+RRIEA+TG+ A + + Q ++ Sbjct: 567 -----GDFSTELCGGTHARRTGDIGLFRIISESGTAAGVRRIEAVTGEGAMATVHAQSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LNDIAHLLKGDSQNLGDKVRAVLERSRQLEKELQQLKDQAAAQESASLSSKAVDLNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + ++ V+ K L++++D L+ ++ S +I+L + E K S++ V++D+ R A +L Sbjct: 682 LVSELAGVEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTGRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVQDWV 779 >gi|154508867|ref|ZP_02044509.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC 17982] gi|153798501|gb|EDN80921.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC 17982] Length = 902 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 311/935 (33%), Positives = 483/935 (51%), Gaps = 74/935 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IRT +L++F+K GHE+ PS SL+ P+++FT +GMVPF TG E + Sbjct: 1 MRTSEIRTRWLDYFEKQGHEIRPSVSLVSPE-PSILFTIAGMVPFIPYITGVEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 ASVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R ++T++D+D+EAF + K G+ I+R+ +NFW + GP GPC+E Sbjct: 116 KYGLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWH 175 Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228 +D+G G+RY+E+WNLVF Q+ + + P K +IDTG Sbjct: 176 YDRGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMR-GEGSGKDYPLLGELDKKAIDTGA 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVD 277 GLER+A V+Q+K N Y+ID +I+A+ Q++G +Y ++ V RV+ D Sbjct: 235 GLERLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVAD 294 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337 H+RSS LI DG+ P N+GRGYVLRR++RRA+ RLLG E M LL A M ++Y Sbjct: 295 HVRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASY 354 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTH 394 PEL I E +E++ F +TL G +LD ++ +++G AF L+DT+ Sbjct: 355 PELEINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTY 414 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--Y 452 G P+D+ ++ +G +D F + EQ+ RARA + +G T+ F EK Sbjct: 415 GFPIDLTLEMAAEQG-VSVDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMG 473 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 G + F+GY + V+A++ G A + +VE Sbjct: 474 GGSTFLGYTE-----------------------QAAEATVEALLVDGVAAPAASAPAEVE 510 Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V+ D+TPFYAE GGQL D G + G +++ DVQ G+ VH + G + Sbjct: 511 VILDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKA 570 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 ID + R ++ H+ATH+++ L ++ ++Q GS +P LRFD H + ++ Sbjct: 571 YAEIDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQ 630 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691 L IE VN+ +A++L V T +M+ + A +GA AL G KY VRVV++ Sbjct: 631 LSDIEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTIGD----GFDR 686 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 LCGGTHV +TG I + ++SE S+ +G+RRI+A+ G A + + L+ + Sbjct: 687 ELCGGTHVPATGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGG 746 Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVD- 805 + R+E + + R+ + K + + S I V ++ + E+ Sbjct: 747 RADELPERIESLLAKLRESEKELEKIRTAQALSQGADLAASAKAIGPVTVVASAVGEMPS 806 Query: 806 SKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV 862 + L+++ ++ ++ + G ++ +G K S+++ E + A L R K Sbjct: 807 ADALRTLALDVRDRLGNDRGTVVALGGVIGGKPSLVVATNEAAREASAKAGALVRAVGKH 866 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +GGGG GGR +AQ GG AI + ++ Sbjct: 867 MGGGG-GGRDDIAQGGGTKPEGIADAIDAIRKEIE 900 >gi|317011441|gb|ADU85188.1| alanyl-tRNA synthetase [Helicobacter pylori SouthAfrica7] Length = 847 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 326/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF+ NGH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFKNNGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 L+I+V+++D+EA KLW+K + AD+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LHISVHEKDDEAVKLWEKF--VPADRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++TG+ Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMKEISELTGLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKDMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL ++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ S Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNIFVGYETTECSSQALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + E Q+V V+ ++TPFYAE GG +GD G + D + Sbjct: 467 --------------DFKEMTETNPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAL 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ L+ ++ + + +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLQIKK-TLKKGDQVIAQVSDER-LEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +HSK + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I I+ ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E R Q A Sbjct: 686 EAVCGKAFYQLAKEENKELKNARILLKNN--DVIAGINKLKESVRNSQKTPAPM------ 737 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL I + + ++ + D KE ++D L+ K + + M+ + ++ ++ V Sbjct: 738 -DLPIETINGTSVVVGVVEQGDVKE---MIDRLKNKHEKLLAMVF-KQENERIALACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + K A+ + Sbjct: 793 NAP---IKAHAWANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAALNVAKN 839 >gi|261839960|gb|ACX99725.1| alanyl-tRNA synthetase [Helicobacter pylori 52] Length = 847 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 322/891 (36%), Positives = 480/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + S L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEYKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECLAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+V V+ ++TPFYAE GG +GD G D I Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLFKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I I+ ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++L GG GGGR A +GG + A+ + Sbjct: 793 NAP---IKANVWANEVAQIL-GGKGGGRSDFASAGGKDIENLQAALNLAKN 839 >gi|303277145|ref|XP_003057866.1| predicted protein [Micromonas pusilla CCMP1545] gi|313471752|sp|C1MR42|SYAP_MICPC RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|226460523|gb|EEH57817.1| predicted protein [Micromonas pusilla CCMP1545] Length = 899 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 311/928 (33%), Positives = 458/928 (49%), Gaps = 78/928 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FLEF++ H LPSSSL+P DPT++ T +GM+ FK +F GQE+ T Sbjct: 10 SGAGIRRRFLEFYEARDHARLPSSSLVPE-DPTVLLTIAGMLQFKPVFMGQEERKVPTAT 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVG T RHHTFFEMLGNFSFG YFK+ AI AW++ TKE+ LD Sbjct: 69 TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIAWAWEISTKEYGLDA 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R++I+V+ ED+EA+ +W+ G+ ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 125 SRIWISVFREDDEAYAIWRDEIGIPENRIKRMDEADNFWAAGPTGPCGPCSELYWDFHPE 184 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 ++ R+IE +NLVFM+ + L + +IDTGMGLERMA +LQ K N Sbjct: 185 RGVDGSEDLDDDSRFIEFYNLVFMESVRDTDGNMKPLKRKNIDTGMGLERMAQILQGKPN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL + +I A+ + G+ Y+ + +VI DH R+ +LI+DG+LP+N GRGY Sbjct: 245 NYETDLIRPIIDAAASMAGISYDDADDATKLKLKVIGDHTRAVCYLISDGVLPSNVGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 ++RR++RR + RLLG + + ++++ I + L E Sbjct: 305 IVRRLLRRVVRCGRLLGVKAPDGAGAFTPAIARVAIGLSEACDANVLKSSQKICDELERE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + RF TL RG +L +L+ L G+ AF LYDT+G PLDI D+ G Sbjct: 365 ELRFATTLGRGEEILADMLAAAKTKDANAPKLTGEDAFTLYDTYGFPLDITTDVATEAG- 423 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D+ F +A+ R +R + + + + E T+F GY + Sbjct: 424 VDVDVDGFEKAMAAARDLSRDARVAVDVTVGDLLGAIADELGEPTRFTGYGSVTEEGV-- 481 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 V+A+++ GE V A +G VEVV D TPFYAE GGQ+GD Sbjct: 482 --------------------KVRALLKGGERVASAGAGDTVEVVLDATPFYAEGGGQVGD 521 Query: 531 TG--CAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G D +L + D +K +FVH +V G++ ++ T+ +RR+ NH Sbjct: 522 EGEIILSDDRGKLVVGDCRKAAGGRLFVHSCVVSEGVVGEGDAVTATVSAASRRRAKANH 581 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +G VSQ GS + + LRFD T EL +E VN I + Sbjct: 582 TATHLLQSALKMTIGEDVSQAGSLVNFERLRFDFNAPSAPTPEELARVESLVNGWIGDAI 641 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + M A GA A+ G KY D V D S LCGGTHV +T EI Sbjct: 642 DLTAEEMAISRAKEKGATAMFGEKYGDVV-----RVVDVPGVSMELCGGTHVKNTAEIGG 696 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I+SES I AG+RRIEA++G L +D +K+LA L+V + GRV + E+ Sbjct: 697 FKILSESGIAAGVRRIEAVSGPGVVDLLQERDGTVKALAGSLRVPPEEIAGRVSALMEDL 756 Query: 768 RKLQLIHAKRKLQLNVED---LSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q + +L V L+ I + + VD LK+ ++L + Sbjct: 757 KTSQKEAEALRGELAVAKATALASQAIDAPGGAKVLVARMDGVDPAALKAAAESLVAALG 816 Query: 822 SGI-IMLVGISKEKKASVLIVVTEDLLD--RFNAVDLA----------RLSAKVLGGGGG 868 + ++L + K ++ TE + A + Sbjct: 817 DDVAVVLGSGGDDGKVGLVASFTEGVQKAGGLKAGVVLGATAKACGGGGGGKPGFA---- 872 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 Q+GG + + D A+ + Sbjct: 873 -------QAGGRDASALDAALEDAKKTI 893 >gi|307210107|gb|EFN86804.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator] Length = 972 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 298/971 (30%), Positives = 456/971 (46%), Gaps = 84/971 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 5 MSGKQIRQAYIDFFKNKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 64 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LT+ Sbjct: 65 KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICSWAWEFLTE 124 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 L RLY+T + DE E +LW + G+ A ++ DNFW M ETGP Sbjct: 125 TLKLPADRLYVTYFGGDEKNGLAPDNECKELWLSL-GIPASHVLPGNMKDNFWEMGETGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ +D+ + + +EIWNLVF+Q+ ++ LPK ID G+ Sbjct: 184 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNREADGNLKPLPKKHIDCGL 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279 GLER+ +V+Q K NYD DLF L A E+ G + +RV+ DH Sbjct: 243 GLERLVSVIQNKRANYDTDLFMPLFAAIEKGTGAPPYQGKIGTDDVNRVDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG +P N GRGYVLRRI+RRA+ YA L L+ + +G +P Sbjct: 303 RTITIALADGGIPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGEVFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I + + E+ +F KTL RG LL+ ++ L ++ + GDVA++LYDT+G P+ Sbjct: 363 EVTKDPQSIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESNDTVPGDVAWRLYDTYGFPI 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + +GL ID+ + + + +A+ S G ++I + + Sbjct: 423 DLTQLMTEEKGLK-IDMAGYEE----SKKQAQLISQNKVGGVDDQINLDVHSITELQE-R 476 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G + V + + V++ SG++V ++ D+T Sbjct: 477 GI-KPTDDSPKYNYKITSTTTYKEYEFAPCIGTVIELRRAKTFVDQVSSGEEVGILLDRT 535 Query: 519 PFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + D + G +H V GIL+ + +D Sbjct: 536 NFYAEQGGQIYDEGFLVKVDDEATEIRIKNVQVRAGYVLHIGTVGEGILKKGDQVHANVD 595 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR + NHSATH L+HAL +LG+ Q GS + PD LRFD T+ P+T+ ++K+ E Sbjct: 596 TTRRRLVMANHSATHALNHALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTEQVKNAE 655 Query: 637 DNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 + ND+I N + + N G A+ Y D VRVVS+ Sbjct: 656 NITNDMIKDNKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVVSMGVPIEELEKNPLSP 715 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 S CGGTH+ TG I I SE +I GIRRI A+TG A L Sbjct: 716 VATQTSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKALKKATLLQNQ 775 Query: 745 L--------ASFLKVSQGNVVGRVEEIWEE--------YRKLQ-----------LIHAKR 777 L A + V ++ E+ E+ +RK + L R Sbjct: 776 LTQLQTTIEADKCGANSKEYVKKIVELTEDISHAVIPGWRKDEMRGMLKKLKKSLDDKDR 835 Query: 778 KLQLNVEDLSCHKIADV-------NFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVG 829 + + ++ + + ++ ++K L S + ++ +L+ Sbjct: 836 AAKAAIANMVVETAQSIIQSKVGCQVLVEVLEAYSNTKALDSALKKIRAVSPETSALLIS 895 Query: 830 ISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + ++ KK L V + + A + + A ++ G GGG+ AQ+ G + ++ Sbjct: 896 VDQDVKKIFALSSVPKSAVSKGLKANEWIQAIAPMM-QGKGGGKSESAQASGADITCLNE 954 Query: 888 AIAGVASFLKK 898 ++ F + Sbjct: 955 IVSKANEFANQ 965 >gi|255311581|ref|ZP_05354151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276] gi|255317882|ref|ZP_05359128.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276s] Length = 875 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 327/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RG Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + ID+ +F Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R ++ + F + ++FIGYD L F Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL Sbjct: 513 GTFLVSHTIAPKTGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632 Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 ++S G KY D VRVVS S LCGGTH +TG+I I E ++ Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L A Sbjct: 687 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + VL V++DL R A L GG GG+ AQ Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852 >gi|166154091|ref|YP_001654209.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] gi|166154966|ref|YP_001653221.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335296|ref|ZP_07223540.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1] gi|205830022|sp|B0B8X5|SYA_CHLT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830023|sp|B0BAK4|SYA_CHLTB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|165930079|emb|CAP03562.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] gi|165930954|emb|CAP06516.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 875 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 328/887 (36%), Positives = 483/887 (54%), Gaps = 45/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RG Sbjct: 239 KTVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + ID+ +F Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R ++ + F + ++FIGYD L F Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ I++ EI G + ++ TPFYAE GGQ+GD+G + Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCES 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632 Query: 659 AIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 ++S G KY D VRVV S LCGGTH +TG+I I E ++ Sbjct: 633 VMSSSEIKQFCGDKYGDIVRVVLAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA TG+ A + GQD L +A+ ++ + ++ ++ + EE + L A Sbjct: 687 TGIRRIEATTGEDAENIARGQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + VL V++DL R A L GG GG+ AQ Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852 >gi|15605482|ref|NP_220268.1| alanyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX] gi|76789490|ref|YP_328576.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] gi|237805100|ref|YP_002889254.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT] gi|6707747|sp|O84754|SYA_CHLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123606616|sp|Q3KKU4|SYA_CHLTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|6578113|gb|AAC68344.2| Alanyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX] gi|76168020|gb|AAX51028.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] gi|231273400|emb|CAX10315.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436296|gb|ADH18470.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9768] gi|296438155|gb|ADH20316.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11074] gi|297140656|gb|ADH97414.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9301] Length = 875 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 327/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RG Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + ID+ +F Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R ++ + F + ++FIGYD L F Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632 Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 ++S G KY D VRVVS S LCGGTH +TG+I I E ++ Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L A Sbjct: 687 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + VL V++DL R A L GG GG+ AQ Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852 >gi|125987341|ref|XP_001357433.1| GA12250 [Drosophila pseudoobscura pseudoobscura] gi|54645764|gb|EAL34502.1| GA12250 [Drosophila pseudoobscura pseudoobscura] Length = 966 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 299/973 (30%), Positives = 449/973 (46%), Gaps = 87/973 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L FF++ H + SSS IP +DPTL+F N+GM +K IF G P Sbjct: 1 MKFLTAKEVRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQYKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEF 120 Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT L + RLY+T + DE E +LW + GL + I+ + DNFW M E Sbjct: 121 LTNRLHLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L +A + G + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG I+ GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + + E + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKS-----LEIDMAGYEAAKQNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E +GQK +V Sbjct: 474 E-QG-VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIVALRFENQFVNEISNGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELQLH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDEERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E D++ +N+P+ + G ++ Y D VRV+S Sbjct: 652 TEQLTKDMVYKNVPIYAKESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A + + Sbjct: 712 AEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFE 771 Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAKRKLQ 780 + + LK + +V E+I +E R L K Sbjct: 772 QEIVK-LKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDD 830 Query: 781 LNVEDLSCHKIA-------------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826 + + N + + ++ K L + + ++ ++ M Sbjct: 831 KERSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAM 890 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N ++ Sbjct: 891 FFSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDR 949 Query: 885 ADQAIAGVASFLK 897 ++ I F + Sbjct: 950 VEEIIQLATKFAQ 962 >gi|282932649|ref|ZP_06338063.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] gi|281303223|gb|EFA95411.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] Length = 878 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 317/920 (34%), Positives = 499/920 (54%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R +L+FF+++GH +LPS SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD+ +L+ TVY +D ++ K+W+K +G+ D II++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLDKDKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ E P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I +E+++ KY + + ++I DH+R+ SF I D Sbjct: 233 RVLSILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE+++ I+ Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQ 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RFG TL+ GL LLD ++ D+ ++G AFKL+DT+G P ++ + Sbjct: 353 KVIKNEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F++ ++ Q+ RAR L S + +L ++F Sbjct: 413 DKGLK-VDKAGFDKEMDAQKERARKARGDLQSMGRQD--ETLMNIKDKSEF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 461 --------------EYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID R L Sbjct: 506 QVADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAHRREGLCH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHL+H AL +LG H Q GS + PD LRFD T P+T E++++E VN I + Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+ V T I + E GA AL KY D+VRVV + S CGGTH S+T +I Sbjct: 626 NIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHCSNTAQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SE +I AG+RRIEA+T ++A +L +D L+ + +K ++ ++ + Sbjct: 681 GIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKTKITSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE Q A+ + ++N S ++ + ++ + +L+ + D + Sbjct: 741 EELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELADNWKAS 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + + KA+++I + + LD+ A +L +++A V GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLA-CANDGKANMVISLADAALDKGLKAGNLIKVAAPVFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N +AI V + + K Sbjct: 859 GKNPAGLKEAITAVINEINK 878 >gi|10803041|gb|AAG23689.1|AF297520_1 alanyl-tRNA synthase [Haemophilus ducreyi] Length = 783 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 322/820 (39%), Positives = 474/820 (57%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 M+GNFSFG YFK AIQ AW+ LT K L + +LY+TVY+ D+EA+ +W K G+ ++ Sbjct: 1 MMGNFSFGDYFKHDAIQFAWEFLTSEKWLHLPKEKLYVTVYETDDEAYDIWHKTVGVPSE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 IIRI N DNFW+M +TGPCGPC+EIF+D GE GGLPG++E +G+RYIE+W Sbjct: 61 HIIRIGDNKGVPYASDNFWAMGDTGPCGPCTEIFYDHGESFWGGLPGTAEEDGDRYIEVW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLERM V+Q +NY+ D+F+ LI+ + Sbjct: 121 NIVFMQFNRQADGTLAKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLH 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + + RVI DH+R+ S+LI DG++P+NEGRGYVLRRI+RRA+ + LLG E Sbjct: 181 VAD--LDNKSLRVIADHIRACSYLIVDGVIPSNEGRGYVLRRIIRRAVRHGNLLGAKEAF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+P L MG A L + I++TL++E+E+F +TL+RGL LL+ L+ + ++ Sbjct: 239 FYKLVPTLAKVMGQAGEILTDKQSYIQKTLKTEEEQFARTLERGLALLEEALTKVE-NQT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+VAFKLYDT+G PLD+ D+ R ID SF + QR RA++ S Sbjct: 298 LSGEVAFKLYDTYGFPLDLTADVCRERD-IVIDEASFEIEMTAQRERAKSSSNFG----- 351 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + S+ + T FIGYD + V A+ G+ Sbjct: 352 -ADYNSVIKVEAETAFIGYDCF-----------------------NAEAKVIALFSNGQA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V++ SG+ VV D+TPFYAE GGQ+GD+G + + D QK +F H V Sbjct: 388 VDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLITTAFCQFAVADTQKYG-QVFGHIGQVV 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L + +D R+ ++ NHSATHLLH AL +LG HV Q GS ++ + LRFD Sbjct: 447 SGSLAIGDIISAQVDIARRQAITANHSATHLLHSALRQVLGEHVVQKGSLVSENVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 + S+ ++ A+L+ IE VN I QNL V M+ E A G AL G KY D VRVV + Sbjct: 507 SQSQAVSKAQLEEIERIVNRQIRQNLAVTIETMDIETAKEKGTVALFGEKYGDVVRVVGM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 S LCGGTHV TGEI L ++SES++ AGIRR+EA+T + A + L Q + Sbjct: 567 T-----DFSIELCGGTHVKHTGEIGLFKLISESAVAAGIRRVEALTAENAINWLHNQQKI 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNF 796 + A LK ++V ++ ++ ++ ++ + K +L + +I +N Sbjct: 622 IHQSAELLKTDSLSLVDKIYQLQDKIKRNEKELQHFKDKLAAQAGAELAKQVVQINGINV 681 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + + ++SK L++++D L+ ++ S I++ +S + K ++++ VT+DL ++ NA +L Sbjct: 682 VIQKLEGIESKSLRTMVDDLKNQLSSVIVVFGSVSAD-KVNLIVGVTKDLSNKVNAGELV 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 L A+ + GG GGGRP MA +GG D A+A ++ Sbjct: 741 GLIAQQV-GGKGGGRPDMAMAGGTEPQHLDTALAFAKQWI 779 >gi|308805977|ref|XP_003080300.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri] gi|122158402|sp|Q015G2|SYAP_OSTTA RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116058760|emb|CAL54467.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri] Length = 945 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 311/918 (33%), Positives = 451/918 (49%), Gaps = 73/918 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FLEF++ GH PS+SL+P DPT++ T +GM+ FK +F GQ + TT QK Sbjct: 67 IRRRFLEFYEARGHSRQPSASLVPE-DPTVLLTIAGMLQFKPVFMGQREREMPRATTTQK 125 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND++NVG T RHHTFFEMLGNFSFG YFK A + AW+L T EF L+ R++ Sbjct: 126 CVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREACEWAWELATNEFGLNPERVW 181 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V+ ED+EAF +W+ + G+ +I R+ DNFW+ TGPCGPCSE+++D Sbjct: 182 VSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYDFHPERGLD 241 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 ++ R+IE +NLVFM+ + L +IDTGMGLERMA +LQ +NNY+ Sbjct: 242 GADLDDDS-RFIEFYNLVFMELNRDADGGIKPLKNKNIDTGMGLERMAQILQGVSNNYET 300 Query: 247 DLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL + +I + + G+ Y +VI DH R+ +++I+DG+ +N GRGY++RR Sbjct: 301 DLIRPIIDKAASMAGLDYASCSATQKQQLKVIGDHTRAVTYMISDGVFASNIGRGYIVRR 360 Query: 304 IMRRAMCYARLLGY-----TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 ++RR + RLLG + + P++++ I L E+ F Sbjct: 361 LLRRVVRNGRLLGIKPADGQSAFTPSIAEVAISMSEECDPQVVKNTARILAELEREELSF 420 Query: 359 GKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTL RG +L ++ + L+G AF LYDT+G PLDI D+ G +D+ Sbjct: 421 QKTLGRGEEMLAELIEKAKDSKSGLSGKDAFTLYDTYGFPLDITTDVASEAG-IAVDLEG 479 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A+ EQRS ++A + + E ++FIGYD + Sbjct: 480 FEKAMAEQRSMSQAAHQTVDVTAGNALAQVADELGAMSEFIGYDNISSDV---------- 529 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S V AIV GE VEEA G +V+VV D TPFYAE+GGQ+GD G Sbjct: 530 ------------SNVLAIVSGGESVEEASGGARVDVVLDVTPFYAESGGQVGDNGFLHSA 577 Query: 538 GIRLQITDVQKK--AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +K I VH A V +G ++ + +D RR+ NH+ATHLL Sbjct: 578 DGAVLKVTDVQKAGGGRIIVHSATVVKGSIKKGSQVSANVDENARRRARNNHTATHLLQS 637 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG VSQ GS D LRFD K +T A+L +E VN I+Q+ + M Sbjct: 638 ALKKVLGDDVSQAGSLCGFDRLRFDFNCPKAVTEAQLLEVETLVNGWISQSADLTAEEMP 697 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A GA + G KY D VRVV V S LCGGTHVS+T EI I+SE+ Sbjct: 698 IAAAKEKGATMMFGEKYGDVVRVVDVPG-----ISMELCGGTHVSNTAEIGGFKIISEAG 752 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +GIRRIEA+ G L +D +K LAS L+V + RV + ++ Q + Sbjct: 753 IASGIRRIEAVAGAGVVELLQQRDAVVKQLASTLRVPPEEIASRVSGMQKDLVAAQKLAE 812 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L V + + + + VD LK + L ++ G +++G Sbjct: 813 SLRGELAVAKANALVSEARAVGESKVLVARLDGVDPGALKVAAENLATQLGDGAAVILGS 872 Query: 831 SKEKKASVLIVVTEDLLD--RFNAVDLA----------RLSAKVLGGGGGGGRPHMAQSG 878 + ++ + + A + Q+G Sbjct: 873 ANGDNVGLVALFDTKVQKDGDLKAGQVLGAAAKRCGGGGGGKPGFA-----------QAG 921 Query: 879 GPNGNKADQAIAGVASFL 896 G + + D A+ L Sbjct: 922 GRDATQLDAALDEALQTL 939 >gi|296437225|gb|ADH19395.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11222] Length = 874 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 327/886 (36%), Positives = 482/886 (54%), Gaps = 44/886 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGY Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 299 VLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFF 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RG LL VL ++G+ AFKL DT+GLP+D + + ID+ +F Sbjct: 359 KTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTFE 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + E + R+R ++ + F + ++FIGYD L F Sbjct: 418 KLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF----------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 465 ------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESG 512 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL Sbjct: 513 TFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEM 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D Sbjct: 573 TLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDV 632 Query: 660 IASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 ++S G KY D VRVVS S LCGGTH +TG+I I E ++ Sbjct: 633 MSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVAT 686 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L A + Sbjct: 687 GIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLE 746 Query: 779 LQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 QL + + KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 747 NQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEKN 806 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + VL V++DL R A L GG GG+ AQ Sbjct: 807 GRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 851 >gi|256852223|ref|ZP_05557609.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260661745|ref|ZP_05862656.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|297205611|ref|ZP_06923007.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16] gi|256615269|gb|EEU20460.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260547492|gb|EEX23471.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|297150189|gb|EFH30486.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16] Length = 878 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 317/920 (34%), Positives = 499/920 (54%), Gaps = 64/920 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S R +L+FF+++GH +LPS SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + +T+ QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K Sbjct: 61 RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD+ +L+ TVY +D ++ K+W+K +G+ D II++ DNFW + E GPCGP +EIF Sbjct: 117 WLGLDKDKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ E RY+EIWN+VF Q+ E P +IDTGMGLE Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ ++LQ+ N++ DLF +I +E+++ KY + + ++I DH+R+ SF I D Sbjct: 233 RVLSILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYVLRR++RRA + LG + L+P + M S YPE+++ I+ Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQ 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RFG TL+ GL LLD ++ D+ ++G AFKL+DT+G P ++ + Sbjct: 353 KVIKNEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQ 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F++ ++ Q+ RAR L S + +L ++F Sbjct: 413 DKGLK-VDKAGFDKEMDAQKERARKARGDLQSMGRQD--ETLMNIKDKSEF--------- 460 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + + IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 461 --------------EYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + A H + + VL ID R L Sbjct: 506 QVADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAHRREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHL+H AL +LG H Q GS + PD LRFD T P+T E++++E VN I + Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+ V T I + E GA AL KY D+VRVV + S CGGTH S+T +I Sbjct: 626 NIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHCSNTAQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 + I+SE +I AG+RRIEA+T ++A +L +D L+ + +K ++ ++ + Sbjct: 681 GIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKTKITSLE 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE Q A+ + ++N S ++ + ++ + +L+ + D + Sbjct: 741 EELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELADNWKAS 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L + + KA+++I + + LD+ A +L +++A V GGGG GGRP+MAQ+G Sbjct: 801 NKSDVLVLA-CANDGKANMVISLADAALDKGLKAGNLIKVAAPVFGGGG-GGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N +AI V + + K Sbjct: 859 GKNPAGLKEAITAVINEINK 878 >gi|256371739|ref|YP_003109563.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256008323|gb|ACU53890.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 854 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 331/886 (37%), Positives = 473/886 (53%), Gaps = 64/886 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R F E+F + GH +PS+SL+P DPTL+FT +GMVPFK F G+E P Y+ Sbjct: 1 MDSNDLRRAFREYFVERGHVPVPSASLVPH-DPTLLFTVAGMVPFKPYFLGEEVPPYRRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T++QKC+RAGGKHNDLD VG T RH TFFEMLGNFSFG YFKE AI AW L+T+ LD Sbjct: 60 TSIQKCMRAGGKHNDLDQVGTTARHLTFFEMLGNFSFGDYFKEGAIPYAWGLVTEVLGLD 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ITV+ D+EA ++W + G+ ++I R+ DN+W M ETGPCGPCSEI++D+GE Sbjct: 120 PDRLWITVHTSDDEAERIWIEACGVRPERIQRL-DEDNWWQMGETGPCGPCSEIYYDKGE 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + ER++EIWNLVFMQ+++ LP IDTG GLER+ VLQ Sbjct: 179 SYGAGGGPAVGSDERFLEIWNLVFMQYDRHPDGSLTPLPAPCIDTGAGLERIVPVLQGHD 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN------IVNHRVIVDHLRSSSFLIADGILPANE 295 + ++ DL L++ ++ +TG +Y G V R++ DH R+++FL+ADG++P NE Sbjct: 239 SVFETDLMWPLMEEAQSLTGRRYGGRFGADAGGDVGLRIMADHARATTFLLADGVVPTNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RR + A+LLG P++ ++ MG AYPE+ + I + E+ Sbjct: 299 GRGYVLRRIIRRLVARAQLLGAKGPVVEPMVRMTAAVMGEAYPEVARELETIVQHAAREE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF TL G LLD L + G +AFKL+DT+GLP+++ ++ RG +D Sbjct: 359 ERFAATLALGRPLLDAALE----GGSVPGALAFKLHDTYGLPIELTMELAAERG-VSVDR 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A+ QR RAR LG + + ++G ++F GY+ Sbjct: 414 AGFEEAMAAQRERARQAGLG-TEAVEHPVSAEVLREHGRSEFTGYEATE----------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +G ++ A G + V D+TPFY E GGQLGDTG Sbjct: 462 ---------------------DEGRLLALASEGDVLVAVLDRTPFYPEGGGQLGDTGTIE 500 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 GDG RL I D + G+ HH G + +D + R L ++H+ATHLLH Sbjct: 501 GDGFRLTIIDTDQPVAGVIRHHVGAVEGEPVIGALVRAVVDAERREGLRVHHTATHLLHW 560 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD LRFD TH P+T E++ IE V I ++ V +M+ Sbjct: 561 ALREVLGPHVKQQGSLVAPDHLRFDFTHWGPLTPDEIEEIERRVAAEIIRDSVVTVELMD 620 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 R++AI GA A G +Y D VRVV G S LCGGTH+ G I L I SESS Sbjct: 621 RDEAIRRGAVAFFGDRYGDVVRVV-----HAGESSVELCGGTHLDRLGRIGHLRITSESS 675 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I A RR+EA+ A L L + + + RV+ I E ++ + A Sbjct: 676 IGANTRRVEAVVQLAALEVAHRDRRLLDELERIVPGGRDGIGERVDRIVERAKRAESELA 735 Query: 776 KRKLQLNVE--DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + + + E + + +D + ++ + ++ + + +++G Sbjct: 736 RERTRTLAERARALAETRGADGLVVARVDGLDQRGVRELAMLVRD-HEGVLGVVIGGVAN 794 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--------GGR 871 ++ V E R A +L R A+ +GGG G GGR Sbjct: 795 GVVALAAAVREGAPWR--ADELLRPVAQAVGGGVGRAEVVAVSGGR 838 >gi|189217804|ref|NP_001121342.1| alanyl-tRNA synthetase [Xenopus laevis] gi|171846704|gb|AAI61712.1| LOC100158432 protein [Xenopus laevis] Length = 968 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 324/972 (33%), Positives = 484/972 (49%), Gaps = 96/972 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59 S IR F++FF+ NGH + SS+ +P +DPTL+F N+GM FK IF P + Sbjct: 5 MTASEIRQKFIDFFKDNGHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMA 64 Query: 60 ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTK Sbjct: 65 KLTRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTK 124 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 EF +D RLY+T + + D E ++W + GL+ +I+ + DNFW M +TGP Sbjct: 125 EFGIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLAESRILPGSMKDNFWEMGDTGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI FD+ + + +EIWNLVF+QF ++ LPK SIDTGM Sbjct: 184 CGPCSEIHFDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTGM 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH Sbjct: 243 GLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGDEDVDGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG P N GRGYVLRRI+RRA+ YA L ++ L+ + +G+A+P Sbjct: 303 RTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFSTLVDVVVQSLGNAFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + ++++ + E+ +F KTL+RG +LD + LG+ +++ GD A+ LYDT+G P+ Sbjct: 363 ELKKDPDMVKDIINDEETQFLKTLNRGRRILDRKIQSLGEHKVIPGDTAWLLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ I RGL +D+ SF + +R A+ S G G+G + + + Sbjct: 423 DLTSLIAEERGLT-LDMESFEE----ERKAAQLKSQGKGAGDEDLLMLDIYAI------- 470 Query: 459 GYDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + LR D + + + + VKAI ++ VEEA +GQ+ +V Sbjct: 471 --EELRSRGLEPTDDLPKYTYTSNAEGVYEFDNLLATVKAIRREKMFVEEASTGQECGLV 528 Query: 515 FDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 D+T FYAE GGQ D G + + + T + G +V H G L+ Sbjct: 529 LDKTCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHVGTLYGNLKVGDQ 588 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +T+ Sbjct: 589 VHLYIDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMTTQ 647 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE------- 682 E++ E+ NDII +N V A G A+ Y D VRVVS+ Sbjct: 648 EIRKTEEIANDIIKENKVVYALDCPLATAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLL 707 Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G V S CGGTH+ ++G IV+E +I GIRRI A+TG A+ L Q Sbjct: 708 ADPSSPAGSVTSVEFCGGTHLKNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQ 767 Query: 739 DEKLKSLASFLKV------SQGNVVGRVEEI-----------------WEEYRKLQL--- 772 D SL+ K +V + ++ E+ + L+ Sbjct: 768 DAIKVSLSDLEKKVKKQTDPNKDVQKEIADLSENLATVVIAQWQKDVLREQLKTLKKTMD 827 Query: 773 ---IHAKRKLQLNVEDLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQSGII 825 +K +Q V +++ I + + + + +K L + L+ + Sbjct: 828 DLDRASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPQTAA 887 Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 M+ + + K + L V ++ D+ A + + ++ L G GGG+ AQ+ G N Sbjct: 888 MIFSVDSDAGKITCLCQVPKETADKGLKANEWVQQVSE-LMDGKGGGKDTSAQATGKNVG 946 Query: 884 KADQAIAGVASF 895 Q + F Sbjct: 947 CLSQVLKLAEDF 958 >gi|237803179|ref|YP_002888373.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] gi|231274413|emb|CAX11208.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] Length = 875 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 326/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L ++I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RG Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + ID+ +F Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R ++ + F + ++FIGYD L F Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632 Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 ++S G KY D VRVVS S LCGGTH +TG+I I E ++ Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L A Sbjct: 687 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + VL V++DL R A L GG GG+ AQ Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852 >gi|255349144|ref|ZP_05381151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70] gi|255503681|ref|ZP_05382071.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70s] gi|255507361|ref|ZP_05383000.1| alanyl-tRNA synthetase [Chlamydia trachomatis D(s)2923] gi|289525793|emb|CBJ15274.1| alanyl-tRNA synthetase [Chlamydia trachomatis Sweden2] gi|296435369|gb|ADH17547.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/150] gi|296439086|gb|ADH21239.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/11023] Length = 875 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 328/887 (36%), Positives = 483/887 (54%), Gaps = 45/887 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RG Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + ID+ +F Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R ++ + F + ++FIGYD L F Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ I++ EI G + ++ TPFYAE GGQ+GD+G + Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCES 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632 Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 ++S G KY D VRVV S LCGGTH +TG+I I E ++ Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVLAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEA TG+ A + GQD L +A+ ++ + ++ ++ + EE + L A Sbjct: 687 TGIRRIEATTGEDAENIARGQDMDLNEIATVIQSPKDQILIKIRSVMEEKKDLAKQVADL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + VL V++DL R A L GG GG+ AQ Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852 >gi|291301348|ref|YP_003512626.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728] gi|290570568|gb|ADD43533.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728] Length = 885 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 312/921 (33%), Positives = 476/921 (51%), Gaps = 65/921 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I+ FL F+ NGH ++PS+ L DP L+F N+GMV F FTGQ+ P + Sbjct: 1 MRTAEIKRRFLAHFEANGHTVVPSAPLPAIEDPNLLFINAGMVQFVPYFTGQQTPPWTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VG T RH TFF+M GNFSFG YFKE+AI+LAWDL+T+ Sbjct: 61 TSVQKCIRT----PDIEEVGITTRHGTFFQMNGNFSFGDYFKEKAIELAWDLMTRPQSQG 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ +LY +VY +D+EA LWK+I+GL ++I R+ ++NFWSM GPCGPCSEI Sbjct: 117 GLGFDESKLYPSVYVDDDEAIGLWKRIAGLPDERIPRLGKSENFWSMGIPGPCGPCSEIL 176 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------EQQNKQERFILPKMSIDTGMGL 230 D G + + RY+E+WNLVFMQ +++ + LP +IDTGMGL Sbjct: 177 LDLGPEFGEEGDFLNGD--RYMELWNLVFMQNLRGEGTNKEDFEILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N ++ID + LI + ++TG +Y + V RVI DH+R+ LI D Sbjct: 235 ERVAYMLQGVNNMFEIDEVRPLIDRASELTGKRYGASRPDDVRFRVIADHVRTGLMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRRI+RRA+ RLLG+ + + LLP M +YPEL + I Sbjct: 295 GVTPSNEGRGYVLRRILRRAIRAIRLLGFEDKALPELLPVARDCMSPSYPELSEDFERIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+E F TL +G +LD + +L G AF+L+DT+G P+D+ ++ Sbjct: 355 SYAYGEEEAFRSTLRQGTTILDTAVKDTKASGGTLLPGAKAFELHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL +D F Q + EQR RA+A + + + + L G T + Y+ L Sbjct: 415 EQGLK-VDEEGFRQLMAEQRRRAKADAQSRKTAHADMSAYRELLTAGGPTDWKAYETL-- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V ++ +G ++ A GQ VEVV D+TPFYAE+G Sbjct: 472 ---------------------NTESTVLGMLAEGSPIQVAKEGQLVEVVLDKTPFYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G G + ++ DVQ+ +G+ VH V +G L ++ +D + R Sbjct: 511 GQHADAGTITGASVSAEVVDVQRPIKGLVVHQVRVLKGELAVGTAVKADVDPEWRLGARQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG Q+GS P LR D + ++ +E+ N + + Sbjct: 571 AHSGTHVVHAALREVLGPAALQSGSFNRPGYLRLDFSWRSKLSDESRSEVEEAANRAVRK 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +LPV + M +A GA AL G Y++ VRVV + GG S LCGGTHV +I Sbjct: 631 DLPVAVKYMTLPEAREFGALALFGETYDETVRVVEI----GGEWSRELCGGTHVQHAAQI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I SE+S+ +G RR+EA+TG A +L + + + +A L + + R+ + + Sbjct: 687 GPVVITSEASVGSGQRRVEAVTGLEAFHYLARERDLVSQIADELGAPRAELPERISALMQ 746 Query: 766 EYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819 + + A + + KI DV + + + + ++ Sbjct: 747 RAKDAEKELANLRAKELRDSAATFAAQAKKIGDVAVAAVQAPDGTGGGDARKLATEIRGH 806 Query: 820 I---QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875 + + GI + + KAS++++V + +A L + + G GGG +A Sbjct: 807 LDPNKPGIAAVAATA-GGKASLVVIVNKTGTAQGLSAQALVKGALS----GRGGGNDEVA 861 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG ++A + V++ + Sbjct: 862 QGGGVPADQASALLQAVSAQV 882 >gi|308485186|ref|XP_003104792.1| CRE-AARS-2 protein [Caenorhabditis remanei] gi|308257490|gb|EFP01443.1| CRE-AARS-2 protein [Caenorhabditis remanei] Length = 966 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 286/976 (29%), Positives = 457/976 (46%), Gaps = 97/976 (9%) Query: 1 MS--NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S +R+TF+ FF +K H + SSS+IP +DPTL+F N+GM FK +F G P Sbjct: 1 MKHLTASEVRSTFINFFKEKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPN 60 Query: 58 Y-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112 + QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG YFK+ I AW+ Sbjct: 61 SDLAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWE 120 Query: 113 LLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164 LLT + + RLY++V+ DE EA ++W+ G+ ++I+ DNFW M Sbjct: 121 LLTTVYGIPSERLYVSVFGGDEATGVPADSEAREIWRS-VGVPDERILNFGMKDNFWEMG 179 Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 + GPCGPCSEI +D+ + + +EIWNLVF+QF ++ LP I Sbjct: 180 DVGPCGPCSEIHYDRIGNRD-ASHLVNADDPMVVEIWNLVFIQFNREEGGSLKTLPAKHI 238 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275 D G+GLER+ V+Q+KT+NYD D+F+ + QA + +G++ + + +RV+ Sbjct: 239 DCGLGLERLIAVMQDKTSNYDTDIFQPIFQAINKGSGVRAYTGHIGDDDKDGIDMAYRVV 298 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334 DH+R+ + ++DG P N GRGYVLRRI+RR + YA L L+P + + +G Sbjct: 299 ADHIRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFASLVPVVISILG 358 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDT 393 +PEL + + + + E+++F KTL RG VL + L + GDVA++LYDT Sbjct: 359 ETFPELSRDPETVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDVAWRLYDT 418 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEK 451 +G P D+ Q + +GL+ +D+ +F +A ++ + A + + L++K Sbjct: 419 YGFPADLTQLMAEEKGLS-VDLTAFEEARKKAIETSSAGTGKFRDTLDLDVHALADLQQK 477 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 T + + AI + G+ V+E V+G++ Sbjct: 478 GVPT--------TDDTPKYAYSFTGEGADAVYKFEPCVGKILAIRRDGKFVDELVAGEEG 529 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ+ D G + + G ++ G + Sbjct: 530 AILLDRTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQVRGGYIVLVGSSEGNFKIGDD 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + D ++ + NH+ TH+L++AL +L Q GS + PD +RFD T+ +TS Sbjct: 590 VNQRFDEDRKQLIMKNHTGTHVLNYALRKVLA-DSDQKGSLVAPDRMRFDFTNKAAMTSE 648 Query: 631 ELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEY------ 683 ++K E+ +I V + + +G A+ Y D VRVV+V Sbjct: 649 QVKQAEEYAQQLINTKGQVYAKNSPLADAKKINGLRAMFDETYPDPVRVVAVGTSVEQLL 708 Query: 684 -----EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 +G + CGGTH+ + I + I SE +I GIRRI A+TG A + Sbjct: 709 QNPDAPEGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEADRAIARA 768 Query: 739 DEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ---------------LIHAKRKLQ-- 780 D L K ++ ++ E +K+Q ++K + Sbjct: 769 DRLEARLVEESKHAKNQELLANKDKFKELQKKIQEIVDEANGALLPSWRKDSLRKKAKDV 828 Query: 781 --------LNVEDLSCHKI-ADVN----------FMSHII-SEVDSKELKSVMDALQKKI 820 + K+ + + H+ S +SK + + + L+ Sbjct: 829 QKDMDGYSKAQQAAVAEKVLGEAKELAAASEQPAVLVHVFTSNANSKAIDNALKLLKDT- 887 Query: 821 QSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +M ++++ K L V + L+ A + VL GG GGG+ AQ G Sbjct: 888 --KAVMAFSVNEDTGKVLCLAKVDKSLVSSLKANEWVNEVCTVL-GGKGGGKDANAQLTG 944 Query: 880 PNGNKADQAIAGVASF 895 N +K D A+ F Sbjct: 945 ENVDKLDAAVELAQKF 960 >gi|284044488|ref|YP_003394828.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684] gi|283948709|gb|ADB51453.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684] Length = 888 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 324/923 (35%), Positives = 483/923 (52%), Gaps = 69/923 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 IR TFL FFQ+ H L S+ L+P +DP+++ T +GM P K F G E+P Sbjct: 3 MTSDEIRETFLSFFQQREHLRLQSAPLVPTAHDPSVLLTTAGMHPLKPYFQGVEQPPATR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T+ QKC RA D++NVG T RH T FEMLGNFS G YFKE I AW+L T+ F L Sbjct: 63 LTSCQKCFRA----TDIENVGNTLRHLTCFEMLGNFSIGDYFKEEVIAFAWELSTQGFGL 118 Query: 121 DQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D R+++TV+ DEE A +LW+K G+ ++I+ + DNFW TGPCGPC Sbjct: 119 DPERIWVTVFGGDEELGLGADEEAIELWQK-VGVPRERIVECSREDNFWQAGPTGPCGPC 177 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SE++ D+G + E ER++E WNLVFMQ++Q LP +IDTG+GL R Sbjct: 178 SELYLDRGLDFGAPDDLPAGENERFLEFWNLVFMQYDQNPVNTLAPLPSKNIDTGLGLNR 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 A +LQ K + ++ D F LI+ ++++G Y + R++ DH R+ +FL+ADG+ Sbjct: 238 FAAMLQGKESVFETDQFWPLIELGQELSGRSYGQDEATTRALRILADHSRAMTFLVADGV 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NE RGY+LRR+MRRA+ + R +G + + MG+AYPE+++ I + Sbjct: 298 VPSNEDRGYILRRVMRRAIQHGRRIGIEPGFLPKFAARVEQIMGAAYPEIVEHSDAIRKW 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 L +E+E FG+TL++G LLD +++ ++ L + F+L+DT+G P+DI ++I Sbjct: 358 LVAEEESFGRTLEQGTKLLDELIAQAKREGEEGLGAEDVFRLHDTYGFPIDITREIAAEH 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA---TQFIGYDLLRG 465 L G+D F Q +++QR+RARA + G G+ + + GA ++F GY Sbjct: 418 DL-GVDEPGFEQLMDQQRARARAGAGGKGATGDGLRERAQELAGGAAFQSEFTGY----- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T + V A+ EA +V V ++PFYA G Sbjct: 472 ------------------ATTAQETTVGAL--------EAEDDGRVLVKLVESPFYAAGG 505 Query: 526 GQLGDTGCAIGDGIRLQI---TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GQ+ D+G + ++ V ERG L+ + +D Q R Sbjct: 506 GQVSDSGWVECADGDCRAEVLDVLRVAGGADQVVVVRPERGALKPGEHVHAVVDRQARHA 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NH+ATHLLH AL LG HV Q GS + PD LRFD TH + ++ EL+ +ED VN+ Sbjct: 566 TEANHTATHLLHAALRRRLGGHVRQAGSAVQPDKLRFDFTHGQALSPDELRDVEDEVNEW 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + N PV ++A GA AL G KY D VR+V V G S LCGGTHV ST Sbjct: 626 VLANFPVRALTTTLDEAKRLGAMALFGEKYGDVVRMVEVG---DGSFSRELCGGTHVRST 682 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EI L + +E+S A +RRIEAITG A L D L+ A+ L+ + V V++ Sbjct: 683 AEIGLFRVTAETSSAANVRRIEAITGPAAVRLLREHDGALRDAATALRATPEQVPAEVDK 742 Query: 763 IWEEYRKLQLIHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 + ++L+ + N + ++ I D K L V D Sbjct: 743 LRVRVKELEKAAKQGAGAGNGALDVDALVAGATEHGGGARVVAAAIELPDPKALPDVADR 802 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 L+ K+ I+L +S + + ++ V L++R A + +++A+V GGGG GGR M Sbjct: 803 LKGKLGDAAIVLGTVS-DGRVHLVASVAPALVERGVKAGAIVKVAAEVTGGGG-GGRDTM 860 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 A++GG + K +AI + ++ Sbjct: 861 ARAGGRDPEKLSEAIDAARTAIE 883 >gi|209862801|ref|NP_001093987.1| alanyl-tRNA synthetase, cytoplasmic [Rattus norvegicus] gi|261260086|sp|P50475|SYAC_RAT RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149038198|gb|EDL92558.1| alanyl-tRNA synthetase [Rattus norvegicus] Length = 968 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 473/969 (48%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ +F++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAREIRERFINYFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEAKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCQTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAKG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ V+E V+GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYHSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G LR + L I Sbjct: 534 FYAEQGGQIFDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLRVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-DADQKGSLVAPDRLRFDFTAKGAMSTEQIKKT 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T G A+ Y D VRVVS+ Sbjct: 653 EEIVNGMIEAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772 Query: 744 SLASFL------KVSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL++ +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSAMEVKVKAQSAPNKDVQKEIADLGEVLATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|325697162|gb|EGD39049.1| alanine--tRNA ligase [Streptococcus sanguinis SK160] Length = 872 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 320/913 (35%), Positives = 489/913 (53%), Gaps = 66/913 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P + Sbjct: 4 MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT + FD Sbjct: 64 TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+ Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175 Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231 GE G E +RYIEIWN+V QF + E LP +IDTG GLE Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290 R+ V+Q N++ DLF +I+ E+++ Y+ + + ++ +VI DH+RS SF I DG Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSSKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGRGYVLRR++RRA + + L EP + L+P + M S YPE+++ + IE+ Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLDINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F A++EQ+ RARA + GS + +L+ + F Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +++ + A+V VE SG ++F +TPFYAE GGQ+ Sbjct: 462 -------------NYEKEELTAELLAVVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + +KA H + L S L ID+ R ++ NH Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE VN+ I + L Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T + + A GA AL G KY VRVV++ G +S LCGGTHV +T EI + Sbjct: 628 AIETVETDIDTAKGMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A + ++E LK++A+ LK Q V +VE + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R+LQ +A+ K + + + +F++ +S D+ L++ D ++K Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV +K + T+D +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857 Query: 882 GNKADQAIAGVAS 894 + +A VA Sbjct: 858 QSAIPALLAAVAE 870 >gi|327281303|ref|XP_003225388.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Anolis carolinensis] Length = 969 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 319/974 (32%), Positives = 469/974 (48%), Gaps = 97/974 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F+ FF +N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFINFFVENQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A + A DLLTKE Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKFALDLLTKE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D + ++W + GL D+I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGNEAAGLQPDLDCKQIWLDL-GLPEDRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ +D+ +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 185 GPCSEMHYDRI-GGRDASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGCRPYTGQVGEDDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ YA L L+ + +G A+PE Sbjct: 304 TITVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAPRGFFATLVDVVVESLGGAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL+RG +LD + LG ++++ GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLNRGRRILDRKIQSLGDNKVIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G G + I + Sbjct: 424 LTGLIAEEKGLK-VDMEGFEE----ERKAAQLKSQGKGGGDEDLIILDIYAI-------- 470 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + LR D + VKA+ ++ VEE +GQ+ +V Sbjct: 471 -EELRSKGLKATDDSLKYNYASDPSGTYEFQSPVATVKALRREKVFVEEVSTGQECGIVL 529 Query: 516 DQTPFYAEAGGQLGDTGC-----AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 DQT FYAE GGQ+ D G G + + T + G +V H G L+ + Sbjct: 530 DQTCFYAEQGGQIYDEGYLVKEEDEGSEDKTEFTVKNVQVRGGYVLHVGTVYGSLKVGDT 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L ID RR + NH+ATH+L+ AL +LG Q GS + PD LRFD T +++ Sbjct: 590 VRLYIDEPRRRPVMSNHTATHILNFALRAVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 648 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE------- 682 E+K E VN +I + V + G A+ Y D VRVVS+ Sbjct: 649 EIKKAEAIVNQMIQEAKVVYAKECALAAAKAIQGLRAVFDETYPDPVRVVSIGIPIEDML 708 Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L Sbjct: 709 ADPSNAAGAITSVEFCGGTHLQNSSHAGHFVIVSEEAIAKGIRRIVAVTGAEAQKALRKV 768 Query: 739 D---EKLKSLASFLKVSQ--------------GNVVGRV------EEIWEEYRKLQLIHA 775 + + L L + +KV ++ V +E+ E + L+ I Sbjct: 769 ESLKKLLADLEAKVKVQTAPNKDVQHEIADLGESLATAVIPQWQKDELRESLKALKKIMD 828 Query: 776 ------KRKLQLNVEDLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQSGII 825 K +Q V D I + + S +K L + L+ Sbjct: 829 DLDRACKADIQKRVLDKMKQLIEAHPNQPLVILEMESGASAKALNESLKLLKTHSPETAA 888 Query: 826 MLVGISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ML + + K + L V +D++ A + + + L G GGG+ AQ+ G N + Sbjct: 889 MLFTVDNDAGKITCLCQVPQDVVSKGLKASEWVQQVSG-LMDGKGGGKDLSAQATGKNTD 947 Query: 884 KADQAIAGVASFLK 897 +A+ F K Sbjct: 948 CLKEALEVATDFAK 961 >gi|83305847|sp|Q3YSV8|SYA_EHRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 887 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 369/909 (40%), Positives = 533/909 (58%), Gaps = 60/909 (6%) Query: 1 MSNVS---SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M + IR F++FF KNGH+L PSS LI +DP+L+FTN+GMV FK++FT Sbjct: 1 MKESNLVGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNAN 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW +TKE Sbjct: 61 VGTAVSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKE 120 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 L++ +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM TGPCGPCSEIF+ Sbjct: 121 LALNKDKLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFY 180 Query: 178 DQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE I GGLP E+G R+ EIWNLVFMQ+ +++ E LPK IDTGMGLER++ V Sbjct: 181 DYGEDIEGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAV 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NYDI+LFK LI+ S++ +G NN + HRVI DH+RS++FLIA+G+ P NEG Sbjct: 241 MQGVHDNYDINLFKDLIKVSKKQSGNT---NNELAHRVIADHVRSAAFLIAEGLTPGNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETL 351 R Y+LRRI+RRA Y +L Y LM + P+L E M YPELI AK LI L Sbjct: 298 RDYILRRIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISIL 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E F TL + L LL+ L L +L GD+AFKLYDT+G P+DI DI+ +G+ Sbjct: 358 KIEEENFKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK 417 Query: 412 GIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F +++Q+ R++ + + K+W +KE YG T+F+GY+ Sbjct: 418 -FDEQGFYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---- 472 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V +I+ +G + E A G +V V+ D TPFYAE+GGQ G Sbjct: 473 -------------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKG 513 Query: 530 DTGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 DTG + +++ D +K + +++H +++ G L + ++ + Sbjct: 514 DTGVFNVIVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEK 573 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ L NHSATHLLH+ L +++ + Q GS ++ D LRFD ++ +T +L IED + Sbjct: 574 RKNLCANHSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKM 633 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTH 698 +I N PVVT I + ++AIA GA AL KY D VRV+++ S LC GTH Sbjct: 634 FSLIRNNSPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIGD------SKELCCGTH 687 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TGEI IVSE+S+ G+RRIEA+TGQ A + Q++ L +A +K N++ Sbjct: 688 VRYTGEIGCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILI 747 Query: 759 RVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +++++ ++L+ + +N++ ++ KI ++F+ ++ V ++ ++ Sbjct: 748 QIDKLNRNNQELKQKLSDAYFSVINLQGIATDKIGSIDFLYSSLNSVPIDVVRKFINE-- 805 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + + +IM + +I V +L + A D + +V+ GGG +AQ Sbjct: 806 -HLVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKS-KGGGNNQLAQI 863 Query: 878 GGPNGNKAD 886 G + D Sbjct: 864 SGEYIKEVD 872 >gi|269837587|ref|YP_003319815.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786850|gb|ACZ38993.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] Length = 879 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 325/912 (35%), Positives = 494/912 (54%), Gaps = 54/912 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR F+EFF + GH +PSSSL+P NDPT++ T +GM F G E+P + Sbjct: 1 MKSNEIRRIFVEFFAERGHLHVPSSSLVPHNDPTVLLTTAGMQQMTPYFLGLERPPSVRM 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T++QKC R D+D VG H TFFEMLGNFS G YFK AI AW+LLT+ F + Sbjct: 61 TSIQKCFRTV----DIDEVG-DEEHLTFFEMLGNFSVGDYFKAEAISWAWELLTERFGIP 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + RL +V+ DE AF W+ G+ I R+ N+W + TGP GP SEIF+D+G Sbjct: 116 RERLRPSVHRNDEFAFAFWRDEIGIPEHLIARLGDEHNWWGPVGTTGPNGPDSEIFYDRG 175 Query: 181 ECIPGGLPGSSEEGERY---IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E + G P + +EIWNLVFM+F ++ + LP+ +IDTGMGLER++ VL Sbjct: 176 EELGCGRPDCGPGCDHCNRFLEIWNLVFMEFYKEEDGSQRPLPRKNIDTGMGLERISMVL 235 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q + ++ DL+ ++ + ++ G++Y + + RVI DH R+ +FLI DG+ P NE Sbjct: 236 QGVGSVFETDLYMPVLLKAAELAGVQYRQDPKVDRSLRVIADHGRAVTFLIGDGVFPGNE 295 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GR YVLRR++RRA+ + RL+G P + + + YP L + + I + +R E+ Sbjct: 296 GRSYVLRRVLRRAVRHGRLIGIDRPFLTEVADVVIDMFAEHYPNLREQQERIRQVIRHEE 355 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E FG+TL G+ + + + L ++ G AF+LYDT+G P ++ +++ GL + Sbjct: 356 EHFGRTLATGIGRFETLAADLRARGETVVPGAEAFRLYDTYGFPYELTEELASDAGLT-V 414 Query: 414 DIISFNQALEEQRS--RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F++A+ QR RA A + T ++ +L +K T F+GY+ Sbjct: 415 DREGFDRAMAAQREQSRASAAIFSDEARTRAALYANLTDK--PTVFLGYETTE------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V I+ E A +G++VE+V DQTPFY E GGQ+GDT Sbjct: 466 ----------------ATGTVVGILGAEAAQESAEAGEQVEIVLDQTPFYPEGGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G D ++ D Q+ A G+ VH IV G ++ + +D Q R + NH+ATH Sbjct: 510 GNIQTDTGVFEVEDTQRPAPGVIVHRGIVREGYIQVGQTAEARVDAQRRADIRRNHTATH 569 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + PD LRFD T +P+ +A L+ +++ VN I + PV Sbjct: 570 LLHTALRRVLGEHVQQAGSLVAPDRLRFDFTSLEPVGAAALREVQEIVNQQILADSPVQA 629 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I ++AIA GA AL G KY D VRVV++ S LCGGTHV+ TGEI L I Sbjct: 630 EIKPYQEAIAEGAIALFGEKYGDNVRVVTIPS-----FSKELCGGTHVNHTGEIGLFVIT 684 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ESS+ +G+RR+EA+TG+ A + + E + L L V + +V + E R+ + Sbjct: 685 EESSVASGVRRVEALTGRAAAEYALRLQEMSQRLVRDLHVPLDELPAQVAALQERLRERE 744 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +++L + + ++ + + L + D L+ K+ SG+++ Sbjct: 745 REIERLRVELASVQIGDLIEKAVTVDGTRVLAARVEAPNRDTLLQMGDRLRDKLASGVVV 804 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + + + ++L +VT DL+ R +A L R V+GG G GGRP +AQ GG + ++ Sbjct: 805 LGAV-IDDRPALLAMVTRDLVQRGVDAGKLIREITPVVGGRG-GGRPELAQGGGTDPSRL 862 Query: 886 DQAIAGVASFLK 897 D A+ S ++ Sbjct: 863 DAALETARSVVE 874 >gi|116331894|ref|YP_801612.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280371|sp|Q04QG6|SYA_LEPBJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116125583|gb|ABJ76854.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 940 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 316/975 (32%), Positives = 471/975 (48%), Gaps = 119/975 (12%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y Sbjct: 1 MKRQSVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI A D Sbjct: 61 TRATSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFF 177 D+ ++++TVY +D+EA K+W G+ ++I R+ DNFW ++G CGPCSE++ Sbjct: 117 GFDKEKIWVTVYTDDDEAEKIWITK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYL 175 Query: 178 DQGECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D+G G G + +R++E WN+VF QF Q + L + IDTG GLE Sbjct: 176 DRGVEKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-------------------NNIVNH 272 R+A +LQ + YD + + +I E+++G+KY+ N Sbjct: 236 RVALLLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAF 295 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RV+ DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L+ + Sbjct: 296 RVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEI 355 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390 YPEL + I++T+ +E+E F KTL+ GL ++ +++ I +G AF L Sbjct: 356 YKPRYPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKTIFSGADAFLL 415 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 Y T+G P ++ ++I+ +GL D F + LE+ R +R K+ + Sbjct: 416 YGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQLSRESWK------ANKVSLMTGQ 468 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 T+F+GY L G + + + + GQ Sbjct: 469 SVEKTEFLGYSSLSG-----------------------KGNIIHLFNENKPAGALKEGQA 505 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 +V ++TPFY E GGQ+GDTG ++ D +K + +H V G Sbjct: 506 GAIVLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDT-QKENDVILHFGEVLSGEFSIAQE 564 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 L ++ R +L +HS THLL+ AL +LG HV Q GS ++P+ LRFD +H +TS Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 E++ IE VN+ I +N PVVT+ + EDA GA A G KY DRVRVV + G S Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDAS 679 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 CGGTHVS TGEI +I ESS AG RRIE + G + +L L Sbjct: 680 VEFCGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLN 739 Query: 751 VS--------------------QGNVVGRVEE-----------IWEEYRKLQLIHAK--R 777 + + ++E+ + EE Sbjct: 740 LKIKSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFL 799 Query: 778 KLQLNVEDLSCHKIADV--------------NFMSHIISEVDSKELKSVMDALQKKIQSG 823 K++ ++E A V +S I + D LK + D L+ + ++ Sbjct: 800 KMKKSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVREKNL 859 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++L + + + V+ ++ + + DL R ++L GG GGG+P MAQ GG Sbjct: 860 LVILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQ 918 Query: 884 KADQAIAGVASFLKK 898 + AI+ K+ Sbjct: 919 NLESAISFAIQLAKQ 933 >gi|183220780|ref|YP_001838776.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910880|ref|YP_001962435.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205830131|sp|B0SGD3|SYA_LEPBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830132|sp|B0SPT4|SYA_LEPBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167775556|gb|ABZ93857.1| Alanine--tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779202|gb|ABZ97500.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase; AlaRS) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 919 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 331/952 (34%), Positives = 490/952 (51%), Gaps = 96/952 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 V I + +FQ GH ++PSSSLIP DPTL+FT +GMV FK +FTG + Y Sbjct: 4 KTVQEIARLYTNYFQDKGHTIVPSSSLIPKGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQKCVR DL+ VG+T RH TFFEMLGNFSFG YFK+ AI+ A D ++ Sbjct: 64 ASVQKCVRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKKEAIEYALDFSLNHLEIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + ++++T+Y +D+EA K W + G+ ++I+R+ DNFW ++G CGPCSE++ D+G Sbjct: 120 KDKIWVTIYLDDDEAKKFWMDL-GIPEERIVRLGKKDNFWGPAGDSGACGPCSELYLDRG 178 Query: 181 ECIPGGLPGSS------EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G G++ + +RY+E WNLVF QF Q E L + IDTG GLER+A Sbjct: 179 PEKGGPTCGNNPNCKPGCDCDRYLEYWNLVFNQFNQTVSGELLPLKQTGIDTGSGLERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQE + YD D K +I+ E ++G KY+ + RVI DH RS F + DGI P Sbjct: 239 MLLQEVDSVYDTDELKSIIKQIEILSGYKYDETTKQSFRVITDHSRSVFFSLGDGIYPDR 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYV+RR++RRA +AR LG EP + L+ L YPEL IE L+ E Sbjct: 299 TGRGYVIRRLIRRASLFARKLGIHEPFLYKLVSTLKDLYSLRYPELKDKAKDIESILKKE 358 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E F TL+ GL L+ VL HL K ++ G F+LY T+G P ++ ++++ RG + Sbjct: 359 EELFLHTLEVGLEELETVLEHLKKEKQTVVTGKEGFRLYSTYGFPREMTKELVEERGFSF 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F + LE+ R +RA G S T+F+GY + Sbjct: 419 DD-KGFEEELEKDRYLSRASWKGKKIQYLTGFSAS---PELKTEFLGYTETK-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + G+ V G++ +V D+TPFYAE GGQ+GDTG Sbjct: 467 ---------------AKSRVLHLFVDGKSVTSTKQGEEAVIVLDKTPFYAEGGGQIGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G + Q+ D +K F+H ++ +G L + I+ + R+ L+ +HS THL Sbjct: 512 YLKKEGFQFQVQDT-QKENDTFLHMGMILKGNLSVGDVVDSEIEVERRQNLANHHSGTHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L+ AL ILGSHV+Q GS ++ D LRFD +H K ++ E+ IE +VN+ ++ N+PV T Sbjct: 571 LNGALRRILGSHVTQKGSIVSADYLRFDFSHPKALSKEEIIQIETDVNEAVSANIPVKTE 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++ A SGA ++ KY VRV+S+ G S CGGTHVS+T EI IV Sbjct: 631 VLEIGQAKESGALSMFDEKYGSVVRVISM-----GDKSKEFCGGTHVSNTKEIGFFAIVK 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKS---------------------------- 744 E S AG RRIEAI G+ ++ + Q + L S Sbjct: 686 EGSPGAGNRRIEAICGESVVNYFLHQFQTLASKIETHNLSAKETFGDLKEFGITKEVPSP 745 Query: 745 --LASFLKVSQGNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794 L + VV R+ + I E + L AK+K + ++ + + Sbjct: 746 EILQTMFHQDGKEVVTRLRKLREELEIELEEKSSALFKAKKKREQKEFQMNPELVDGLLQ 805 Query: 795 --------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 ++ + VD+K LK + D+L+ K I+ L G ++ + ++++ + + L Sbjct: 806 KAHHFPKGKVVTEVFPSVDAKSLKDLADSLKAKEPE-ILCLFGTTEGESSTLVFMCNKVL 864 Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +R + D+ + + V+ G GGGRP MAQ GG +++ S K Sbjct: 865 NERGIHCGDILKETL-VMLDGKGGGRPDMAQGGGKKPESVAKSLEFALSLAK 915 >gi|256752916|ref|ZP_05493749.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256748196|gb|EEU61267.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 757 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 323/785 (41%), Positives = 472/785 (60%), Gaps = 43/785 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + VTT Sbjct: 7 NEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L R Sbjct: 67 QRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVNR 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++++Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGP SEI+FD+GE Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEKG 181 Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R+IE WNLVF QF + + LP +IDTGMGLER+AT++Q + Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVDS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +D+D+ + + Q+ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGYV Sbjct: 242 IFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA + +LLG + + ++ ++ G AYPE+I K I+ ++ E+ERF + Sbjct: 302 LRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFKE 361 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+D+GL +L ++ L +L G AFKLYDT+G PLD+ ++IL G+ +D + Sbjct: 362 TIDQGLTILQDYINELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEGY 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + LE+QR RAR+ S + I+ +L + T+F+GYD Sbjct: 421 TKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYES------------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +S V AIV+ E+VEEA +G V ++ D TPFYAE+GGQ+GD G + Sbjct: 466 ----------NSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILENEN 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +++ D +K + F+H +ERG++ + ID +RR + NH+ATHLLH AL Sbjct: 516 VLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKALK 574 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V ++ Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYDE 634 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA AL KY D+VRVV + +S LCGGTHV +T EI + IVSES++ A Sbjct: 635 AVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVGA 689 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A +L ++E LK + LK +V ++E + + + + K Sbjct: 690 GLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQLK 749 Query: 779 LQLNV 783 +++ Sbjct: 750 IKMAS 754 >gi|148679537|gb|EDL11484.1| alanyl-tRNA synthetase, isoform CRA_a [Mus musculus] Length = 1055 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 93 TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 152 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 153 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 212 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 213 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 271 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 272 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 330 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 331 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 390 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 391 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 450 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 451 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 510 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 511 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 564 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ V+E V+GQ+ VV D+T Sbjct: 565 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 620 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 621 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 680 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 681 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 739 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T+ G A+ Y D VRVVS+ Sbjct: 740 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 799 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 800 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 859 Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL++ +K +V + ++ E +++K + + L+ ++DL Sbjct: 860 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 919 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 920 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 979 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 980 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 1038 Query: 889 IAGVASFLK 897 + SF + Sbjct: 1039 LQLATSFAQ 1047 >gi|73666779|ref|YP_302795.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake] gi|72393920|gb|AAZ68197.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake] Length = 891 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 369/909 (40%), Positives = 533/909 (58%), Gaps = 60/909 (6%) Query: 1 MSNVS---SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M + IR F++FF KNGH+L PSS LI +DP+L+FTN+GMV FK++FT Sbjct: 5 MKESNLVGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNAN 64 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW +TKE Sbjct: 65 VGTAVSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKE 124 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 L++ +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM TGPCGPCSEIF+ Sbjct: 125 LALNKDKLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFY 184 Query: 178 DQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE I GGLP E+G R+ EIWNLVFMQ+ +++ E LPK IDTGMGLER++ V Sbjct: 185 DYGEDIEGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAV 244 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NYDI+LFK LI+ S++ +G NN + HRVI DH+RS++FLIA+G+ P NEG Sbjct: 245 MQGVHDNYDINLFKDLIKVSKKQSGNT---NNELAHRVIADHVRSAAFLIAEGLTPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETL 351 R Y+LRRI+RRA Y +L Y LM + P+L E M YPELI AK LI L Sbjct: 302 RDYILRRIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISIL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E F TL + L LL+ L L +L GD+AFKLYDT+G P+DI DI+ +G+ Sbjct: 362 KIEEENFKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK 421 Query: 412 GIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F +++Q+ R++ + + K+W +KE YG T+F+GY+ Sbjct: 422 -FDEQGFYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---- 476 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V +I+ +G + E A G +V V+ D TPFYAE+GGQ G Sbjct: 477 -------------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKG 517 Query: 530 DTGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 DTG + +++ D +K + +++H +++ G L + ++ + Sbjct: 518 DTGVFNVIVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEK 577 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ L NHSATHLLH+ L +++ + Q GS ++ D LRFD ++ +T +L IED + Sbjct: 578 RKNLCANHSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKM 637 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTH 698 +I N PVVT I + ++AIA GA AL KY D VRV+++ S LC GTH Sbjct: 638 FSLIRNNSPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIGD------SKELCCGTH 691 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TGEI IVSE+S+ G+RRIEA+TGQ A + Q++ L +A +K N++ Sbjct: 692 VRYTGEIGCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILI 751 Query: 759 RVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +++++ ++L+ + +N++ ++ KI ++F+ ++ V ++ ++ Sbjct: 752 QIDKLNRNNQELKQKLSDAYFSVINLQGIATDKIGSIDFLYSSLNSVPIDVVRKFINE-- 809 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + + +IM + +I V +L + A D + +V+ GGG +AQ Sbjct: 810 -HLVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKS-KGGGNNQLAQI 867 Query: 878 GGPNGNKAD 886 G + D Sbjct: 868 SGEYIKEVD 876 >gi|212550874|ref|YP_002309191.1| alanyl-tRNA synthetase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549112|dbj|BAG83780.1| alanyl-tRNA synthetase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 872 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 311/921 (33%), Positives = 463/921 (50%), Gaps = 76/921 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +F ++F+ H+++ SS +I NDPTLMFTN+GM FK++ G Y + Sbjct: 1 MTAKKIRQSFKDYFENKNHKIVSSSPMIIKNDPTLMFTNAGMNQFKDVILGNALVKYTRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 VQKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ LT+ LD Sbjct: 61 ANVQKCLRVNGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEYAWEYLTEILKLD 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T+++ D EA W K L II DNFW M GPCGPCS Sbjct: 121 KDRLYVTIFEGNSSEKLERDNEAANYWGKY--LPKSHIIDGNKKDNFWEMGNMGPCGPCS 178 Query: 174 EIFFDQGECIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D S ++ + IEIWNLVFMQF ++ LP+ IDTGMG Sbjct: 179 EIHIDIRSDEEREKVDSLTLINKNHPQVIEIWNLVFMQFNRKIDGSLENLPQKVIDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ V+Q K +NYD D+F+ +IQA +T Y N+ + RV+ DH+R+ +F IA Sbjct: 239 FERLCMVVQGKASNYDTDVFQTIIQAISTITKFSYGQNSQRDIAIRVVADHIRTIAFSIA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N GYV+RRI+RRA+ Y+ L + L+P+L MG YPELI K + Sbjct: 299 DGQLPSNTKAGYVIRRILRRAVRYSYTFLEQKRAFIYRLIPSLVDSMGEVYPELIAQKKM 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 +++ ++ E+ F +TL+ G LL+ + + +NG F LYDT+G PLD+++ I Sbjct: 359 MQKVIKEEENSFLQTLEIGTKLLNKKIQEAKTKNKTTINGVDVFILYDTYGFPLDLIKLI 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L + + +D SF+ + +Q+ RAR + W L+E G TQF+GYD + Sbjct: 419 LHEQNMK-MDKASFDAEMSKQKERARNA-----TTIETGDWIVLQE--GDTQFVGYDTIT 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RKV + + ++V D+TPFYAE Sbjct: 471 TQARILRCRKVKQKNT----------------------------EYYQIVLDKTPFYAEM 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD+G I K + +H + + +D + RR Sbjct: 503 GGQIGDSGQLIDSNGISISIIDTKCENNLVIHII--NQLPENLYDTFNAEVDARKRRATE 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG+HV Q GS ++ + LRFD +H K +T E++ +E + I Sbjct: 561 CNHTATHLLHEALRLVLGTHVEQKGSYVSSEVLRFDFSHFKKVTEKEIRQLEKIITKKIR 620 Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 QN+ R + +A GA AL KY + VRV+ S LCGGTH +STG Sbjct: 621 QNIALEEKRHIPLVEARRLGAIALFYEKYEENVRVIKFGS------SIELCGGTHTTSTG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I I+SE SI AGIRRIEAIT ++ S Q + + + L +++ ++++ Sbjct: 675 YIGNFRIISEFSISAGIRRIEAITAEKVESFFYAQQDIIHNAKMLLN-HTSDLLQSIKKL 733 Query: 764 WEEYRKLQLIHAKRK------LQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816 E L+ ++ V + +N I+ + +K + + Sbjct: 734 ISENILLKKQVETYNREKTIFIKNQVIKTKKQTPSGINLF--ILEGFFPASIVKDIAFQI 791 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875 + E K + I+++ DL+ NA + R ++K++ G GGG+ H A Sbjct: 792 GSEFTEKSYFAAATVAEGKPLLTIMISNDLVKNGLNASQIVREASKIIK-GNGGGQSHFA 850 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + N A+ + + + Sbjct: 851 TAGGKDINGLPMALKEILNKV 871 >gi|26336489|dbj|BAC31927.1| unnamed protein product [Mus musculus] Length = 968 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 314/969 (32%), Positives = 477/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ V+E V+GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS +TPD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVTPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772 Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL++ +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|323486958|ref|ZP_08092273.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum WAL-14163] gi|323399730|gb|EGA92113.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum WAL-14163] Length = 817 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 314/850 (36%), Positives = 474/850 (55%), Gaps = 48/850 (5%) Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L Sbjct: 1 MTTCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGL 56 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLY +VY ED+EAF +W K G+ ++I R DNFW GPCGPCSEI++D+G Sbjct: 57 DPDRLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRG 115 Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P E +RYIE+WN VF QF L +IDTGMGLER+A V+Q Sbjct: 116 EKYGCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQ 175 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 E + + +D K L+ ++ KY+ N+ V+ R++ DH++S +F+I+DGI+P+NEG Sbjct: 176 EVDSLFTVDTNKALLDRVCELAHTKYQENHETDVSLRIVADHIKSCTFMISDGIMPSNEG 235 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG M L + YPEL + +I + L E++ Sbjct: 236 RGYVLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEED 295 Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F KT+D+GL +L + + + + +L+GD AFKLYDT+G P+D+ ++IL + L+ +D Sbjct: 296 KFNKTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LD 354 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+++Q+ +ARA + + + T+F GY L Sbjct: 355 EDGFTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGYGKL----------- 403 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S + + + EIVE GQ ++ +TPFYA GGQ D G Sbjct: 404 ------------AEESEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVI 451 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D K G H V +G+ +T ++ L +D +NR NHSATHLLH Sbjct: 452 TAQDAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLH 511 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LG+HV Q GS +T D LRFD TH +T E+ ++E VND IA LPV T +M Sbjct: 512 KALRTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVM 571 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A +GA AL G KY D VRVV + G S+ LCGGTHV +T I IVSE+ Sbjct: 572 TLDEAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEA 626 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+T ++ +++L A +K + + ++E + +E + L + Sbjct: 627 GIAAGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSEN 686 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K +L + L ++ V ++ + +VD L+++ D L++K+ G++++ Sbjct: 687 EKLKSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIAS 746 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + ++ K +++ VT + + +A +L + A ++GGGG GGRP+MAQ+GG N A Sbjct: 747 V-QDGKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGIPDA 804 Query: 889 IAGVASFLKK 898 + A +++ Sbjct: 805 LKKAAETVQE 814 >gi|34610207|ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus] gi|47117019|sp|Q8BGQ7|SYAC_MOUSE RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|23270912|gb|AAH33273.1| Alanyl-tRNA synthetase [Mus musculus] gi|26351767|dbj|BAC39520.1| unnamed protein product [Mus musculus] gi|148679538|gb|EDL11485.1| alanyl-tRNA synthetase, isoform CRA_b [Mus musculus] Length = 968 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ V+E V+GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772 Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL++ +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|300173639|ref|YP_003772805.1| alanyl-tRNa synthetase [Leuconostoc gasicomitatum LMG 18811] gi|299888018|emb|CBL91986.1| alanyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 329/932 (35%), Positives = 492/932 (52%), Gaps = 74/932 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N S IR FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKELNSSQIRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSAVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFKE I AW+LLT K Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEGIPWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD+ LY+TVY +D EA K+W++ + + I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDKELLYVTVYPKDTEAKKIWQEKTDIPEGHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 FD+G+ E ERY+EIWN+VF QF + + LP +IDTG Sbjct: 174 FDRGKDFQDLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY----EGNNIVNHRVIVDHLRSS 282 MGLER+ +V Q+ N+D DLF +I+A+E ++ KY + + +VI DH+R+ Sbjct: 234 MGLERVVSVFQKGRTNFDTDLFLPIIKATEALSDGFKYDSLVNSESNTSFKVIADHIRAV 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I DG LP+NEGRGYV+RR++RRA+ + + LG T + L+P + M S YPE+++ Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGITGEFLTQLVPVVGDIMQSYYPEILE 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 I++ + +E++RF TL GL LL+ V+ + L+G AFKL DT+G PL++ Sbjct: 354 NTPKIQKIIAAEEKRFNATLTGGLALLNQVINQAKAEGKTQLSGIDAFKLSDTYGFPLEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q+ L + ++ A + G + LK A+Q++G Sbjct: 414 TQEQAAEADLTVDIQGFNDALQAQRTRARAARANDKSMGIQNAVLTDLK---VASQYVG- 469 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVE----EAVSGQKVEVVF 515 +T ++ + AI+ Q + V+ AV GQK+++VF Sbjct: 470 ---------------------WSVTAVDNAKIMAIIGQDDQGVDALLSSAVKGQKLQLVF 508 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+TPFYAE GGQ+ D G + ++ ++ DVQ G +H V T+ + L Sbjct: 509 DKTPFYAEMGGQVADYGEVLTATGKVIARVIDVQNAPNGQHIHTVDVLCDFKLTDT-VNL 567 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D +S NH+ATH+L +L I+G + Q GS + P+ LRFD T+ P++ ++ Sbjct: 568 QVDMARHIAVSKNHTATHMLDQSLRNIIGGDIHQAGSLVEPEYLRFDFTNEGPVSEENIE 627 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE +N IA NLPV + E A GA A+ G KY VRVVS+ G + Sbjct: 628 KIETLMNHEIANNLPVSWLETDIESAKKMGAVAVFGEKYGALVRVVSI-----GDFNKEF 682 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 GGTHV ST E+ L IVSES I AG+RRIEA+TG +A + ++ LK++A+ +K + Sbjct: 683 DGGTHVKSTAELGLFKIVSESGIGAGVRRIEAVTGLQAIALYQAEENALKAIATTVKAQR 742 Query: 754 -GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSK 807 +V +V ++ E + Q + QL ++++ + Sbjct: 743 LTDVPSKVADMQLELKATQRKLESLESQLANAAATEVFSDVKTSHGHSYITAQLQVSGMD 802 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGG 866 L+ V D + S +++L + + ++++ + A +L + A +GGG Sbjct: 803 GLRQVADNWKMSYPSDVLVLAATV-DGRVNLIVTASPSANAAGIKAGELIKAIAPRVGGG 861 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 G GGRP MAQ+GG N +A A VA+FL K Sbjct: 862 G-GGRPDMAQAGGKNPAGIAEAFADVANFLAK 892 >gi|116327492|ref|YP_797212.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122284708|sp|Q054G6|SYA_LEPBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116120236|gb|ABJ78279.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 940 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 316/975 (32%), Positives = 472/975 (48%), Gaps = 119/975 (12%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y Sbjct: 1 MKRQSVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI A D Sbjct: 61 TRATSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFF 177 D+ ++++TVY +D+EA K+W G+ ++I+R+ DNFW ++G CGPCSE++ Sbjct: 117 GFDKEKIWVTVYTDDDEAEKIWITK-GIPKERIMRLGKKDNFWGPAGDSGACGPCSELYL 175 Query: 178 DQGECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D+G G G + +R++E WN+VF QF Q + L + IDTG GLE Sbjct: 176 DRGVEKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-------------------NNIVNH 272 R+A +LQ + YD + + +I E+++G+KY+ N Sbjct: 236 RVALLLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAF 295 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RV+ DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L+ + Sbjct: 296 RVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEI 355 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390 YPEL + I++T+ +E+E F KTL+ GL ++ +++ I +G AF L Sbjct: 356 YKPRYPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKTIFSGADAFLL 415 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 Y T+G P ++ ++I+ +GL D F + LE+ R +R K+ + Sbjct: 416 YGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWK------ANKVSLMTGQ 468 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 T+F+GY L G + + + + GQ Sbjct: 469 SVEKTEFLGYSSLSG-----------------------KGNIIHLFNENKPAGALKEGQA 505 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 +V ++TPFY E GGQ+GDTG ++ D +K + +H V G Sbjct: 506 GAIVLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDT-QKENDVILHFGEVLSGEFSIAQE 564 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 L ++ R +L +HS THLL+ AL +LG HV Q GS ++P+ LRFD +H +TS Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 E++ IE VN+ I +N PVVT+ + EDA GA A G KY DRVRVV + G S Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDAS 679 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 CGGTHVS TGEI +I ESS AG RRIE + G + +L L Sbjct: 680 VEFCGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLN 739 Query: 751 VS--------------------QGNVVGRVEE-----------IWEEYRKLQLIHAK--R 777 + + ++E+ + EE Sbjct: 740 LKIKSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFL 799 Query: 778 KLQLNVEDLSCHKIADV--------------NFMSHIISEVDSKELKSVMDALQKKIQSG 823 K++ ++E A V +S I + D LK + D L+ + ++ Sbjct: 800 KMKKSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVREKNL 859 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++L + + + V+ ++ + + DL R ++L GG GGG+P MAQ GG Sbjct: 860 LVILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQ 918 Query: 884 KADQAIAGVASFLKK 898 + AI+ K+ Sbjct: 919 NLESAISFAIQLAKQ 933 >gi|73957022|ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) isoform 1 [Canis familiaris] Length = 968 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 314/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +G+ +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGM-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S V + V A+ + VEE +GQ+ VV D+T Sbjct: 478 LEATEDSPK----YNYHSDSSGSYTFENVVATVVALRRDKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + +++ T + G +V H G LR + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L + Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKN 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL+ + +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPETSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E + + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|149699352|ref|XP_001501062.1| PREDICTED: similar to LOC510933 protein [Equus caballus] Length = 968 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 314/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYAGKVGADDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG+ + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGESKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ + VEE +GQ+ VV D+T Sbjct: 478 LEATDDSPKYNYY----SDSSGSYVFESAVATVMALRRDKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I PV T+ + G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772 Query: 744 SLASFLK------VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL+ +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSVMEGKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|83814294|ref|YP_445665.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855] gi|123528738|sp|Q2S2B6|SYA_SALRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83755688|gb|ABC43801.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855] Length = 966 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 320/981 (32%), Positives = 484/981 (49%), Gaps = 123/981 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FFQ GHE++PS+SL+P D TL+FTN+GM FK++F G + Y Sbjct: 19 SSEEIRQDFLQFFQAKGHEVVPSASLVPDGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAV 78 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFK AI+ AW+LL + + L Sbjct: 79 DTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAP 138 Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 RLY TV++ D+ EA+ LW + L ++++ + +NFW M +TGPCGPCSE Sbjct: 139 DRLYATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSE 198 Query: 175 IFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 + D G + + + +E+WNLVF+Q+ Q L +DTGMG Sbjct: 199 LHVDLRPPEARQETPGRELVNVDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGF 258 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQAS------EQVTGMKYEGNNIV--------NHRVIV 276 ERM VLQ K + YD DLF L+QA E++ G RV+ Sbjct: 259 ERMVAVLQGKESTYDTDLFAPLLQAMADRSPREEIRGYDDLHIEDDDEHEQVRIALRVVA 318 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335 DH+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y L EP + L+ L +MG Sbjct: 319 DHIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGG 378 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL---------------------- 373 + L + + IE+ +RSE+E F +TL G+ + V+ Sbjct: 379 PFDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALR 438 Query: 374 --------------------------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + + L G +AF L+DT+G P+D+ + + Sbjct: 439 EDAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARE 498 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 R L +D+ + ++ Q+ RARA S + + W S+ A+ F+GYD Sbjct: 499 RDL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVS-PGEASVFVGYDR----- 551 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + V+A+ V E Q+ EV +TPFYAEAGGQ Sbjct: 552 -----------------AVVPDAEVRAV-----RVVETGDTQQYEVELSRTPFYAEAGGQ 589 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG +Q+ D Q++ E I V+ + + +D + R + +H Sbjct: 590 VGDTGTLRFGDESVQVLDTQREGERIAHT---VDTLPEPLDGPVEAAVDAERRNHIRAHH 646 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHL+H L LG HV Q GS + PD LRFD +H + L+ IE VN I QN+ Sbjct: 647 TATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQNI 706 Query: 648 PVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P R + ++A+ GA AL +Y DRVRV++ + S LCGGTHV +TGEI Sbjct: 707 PKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDP----DFSMELCGGTHVDATGEIG 762 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L +SE S+ +G+RR+EA+ G+ A H+ + E L + ++ + E+ EE Sbjct: 763 LFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQEE 822 Query: 767 YRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 +L + + + L + + + ++ + +L+ + + K+ Sbjct: 823 RDRLAGEVDQLRRGQLSDQLDTFIAENAASVDGITVVTGRLDRASMDDLQELGQQFRDKL 882 Query: 821 QSGII-MLVGISKEK-KASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 G + +L + ++ KA V+ V +DL+D A DL LGGGG GGRP +A Sbjct: 883 GEGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRLGGGG-GGRPSLAS 941 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG + D + GV + ++ Sbjct: 942 AGGRDPEALDTVLDGVPALVR 962 >gi|195033960|ref|XP_001988798.1| GH11356 [Drosophila grimshawi] gi|193904798|gb|EDW03665.1| GH11356 [Drosophila grimshawi] Length = 967 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 297/970 (30%), Positives = 456/970 (47%), Gaps = 84/970 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +R +L+FF++ H + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 4 MTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTADPNSEMS 63 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ Sbjct: 64 KWVRTVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 123 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 L + RLY+T + D E + W + GL + I+ + DNFW M ETGP Sbjct: 124 RLRLPKDRLYVTYFGGDAASGLQPDLECKQFWMDL-GLKPEHILPGSMKDNFWEMGETGP 182 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ FD+ +++ +EIWNLVF+QF +++ LPK ID GM Sbjct: 183 CGPCSELHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCGM 241 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279 G ER+ +V+Q K +NYD DLF L A + G + +RV+ DH Sbjct: 242 GFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHA 301 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G A+P Sbjct: 302 RTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVSTVVDLLGDAFP 361 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397 E+ + I + + E+ +F KTL RG LL+ + L + GDVA++LYDT+G P Sbjct: 362 EVKKDPQHIMDIINEEELQFLKTLTRGRNLLNRTIEKLGTSQTTIPGDVAWRLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ Q + + L ID+ + + + S G G+ ++I + + Sbjct: 422 VDLTQLMAEEKSL-QIDMAGYEA----AKQNSYILSQGKGASKIDEITLDVHAISELQE- 475 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 G F V ++ + +S + A+ + + V+E SGQK +V D+ Sbjct: 476 KGLPSTD-DSFKYNYEAVSVERDAAYNFSECTSKIVALRFENKFVQEISSGQKAGIVLDK 534 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ D G + + G ++ H V G L L L ID Sbjct: 535 TNFYAESGGQIYDQGVLVKLNDEANEFLVDRVYNRGGYILHIGVVEGNLAVGDELQLHID 594 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 595 VERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNCKAAMTIDQVARTE 654 Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 D++ QN+P+ + G ++ Y D VRV+S E Sbjct: 655 KLTRDMVYQNMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDRLESQPDAE 714 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ ++G IM I SE +I GIRRI A+TG A + + + Sbjct: 715 TGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQE 774 Query: 745 LASFLKVSQGNVVGR--------VEEIWEEY--------RKLQLIH-----------AKR 777 ++ + + G+ + E+ E+ +K ++ + +R Sbjct: 775 ISQLQATIEADQSGKESKMYVKLIVELTEQISHATIPHVKKDEMRNLLKLLKKSLDDKER 834 Query: 778 KLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829 L+ V + + H + ++ K L + + ++ ++ M V Sbjct: 835 ALRAAVSVTVVERTKALCEAEPQAKVLVHQLEAYNNTKALDAALKQVRLQLPEAAAMFVS 894 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KK L V + +++ A + + + +L GG GGG+ AQ+ G N + D+ Sbjct: 895 VDADSKKIFCLCSVPKAAVEKGLKANEWVQHVSSIL-GGKGGGKAESAQASGSNFERVDE 953 Query: 888 AIAGVASFLK 897 + F + Sbjct: 954 IVQLANQFAQ 963 >gi|167756780|ref|ZP_02428907.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402] gi|237734498|ref|ZP_04564979.1| alanyl-tRNA synthetase [Mollicutes bacterium D7] gi|167702955|gb|EDS17534.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402] gi|229382318|gb|EEO32409.1| alanyl-tRNA synthetase [Coprobacillus sp. D7] Length = 869 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 328/913 (35%), Positives = 493/913 (53%), Gaps = 63/913 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + +R FL+FF+ GH++ PS SLIP +DPTL++ N+G+ K F G P Sbjct: 1 MKQLTGNQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAAIKKYFDGTITPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+LLT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKDAIDFAWELLTDEK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F ++ +LYITV+D DEEA+ W + G++ D +++ T NFW + E GPCGP SEIF Sbjct: 117 WFAFEKDKLYITVHDHDEEAYDYWVNVKGVAVDHMLK--TPGNFWEIGE-GPCGPDSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228 +D+GE E +RYIEIWNLVF Q+ Q ++ LP+ +IDTGM Sbjct: 174 YDRGEKYDPDGLGTKLFYEELENDRYIEIWNLVFSQYNSQEGVAREDYKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+ +++Q N+D D F +I E++ + Y N + +RVI DH+R+ +F +AD Sbjct: 234 GLERITSIIQGGETNFDTDFFLPIIHEVEKLANVSY-QENKMAYRVIADHIRTVTFALAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G L N GRGYVLRRI+RRA+ Y + +G + M L+ + M Y L + I Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKQIGIEKAFMYDLVDVVSEIMKEFYDYLPEKVSYIS 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + ++ E+E F KTL G LL +++ D +++G AFKLYDT+G P ++ +I Sbjct: 353 DLVKKEEEAFHKTLTNGEKLLSSIIAK-NTDGVISGKDAFKLYDTYGFPFELTLEIAEES 411 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D +F L+ Q+ R+R S ++K L + F YD Sbjct: 412 DLK-VDEEAFRAELKVQQERSRGARTDSESMASQK--PDLMAFDLPSNFE-YDPT----- 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ++S+V + + G + EV+FD T FYAE GGQ Sbjct: 463 ------------------NINSVVIGLFKDGVKTDRI--DDYGEVIFDTTTFYAEMGGQC 502 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG + + ++ +V K +H ++ G +R L L +D R ++ NHS Sbjct: 503 ADTGYVYNENCQGEVINVLKAPNQQHLHFVKLKTGTIRVGDILTLDVDKAKRNKIIANHS 562 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+L AL I+G H++Q GS + LRFD TH + IT+ +LK IE+ VN++I + Sbjct: 563 ATHILQAALKEIIGKHINQAGSYVDDHRLRFDFTHFEKITNEQLKLIENQVNNVIFDGVA 622 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V M +++AI SGA AL KY D+VRVVS+ G +S LCGG HVS++ I L Sbjct: 623 VDIAHMTKDEAINSGAMALFDEKYGDKVRVVSI-----GDYSMELCGGCHVSNSANIGLF 677 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 I +E S+ +G+RRIEA+TG+ A L+ + E + +++ LK+ ++ VV +V + EE Sbjct: 678 KIEAEESVGSGVRRIEAVTGKTAYQALVQEKETVDIISNILKLKNRKEVVAKVTALTEEL 737 Query: 768 RKLQLIHAKRKLQLNV--EDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSG 823 + QLN + I ++N + + E +D+ + K + + KI+ G Sbjct: 738 SNTKKEIEILSGQLNALNAASKANDIQEINGVKVLFVEEMIDAAKAKQLAFDFRDKIEEG 797 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++LV E K S + VT++ + + A D+ + V+ G GGG+P AQ G P Sbjct: 798 IVILV-TQFEDKCSYFVGVTKNYVATGYKAGDIIKKINAVV-DGRGGGKPDFAQGGCPIN 855 Query: 883 NKADQAIAGVASF 895 +K + +F Sbjct: 856 DKISNIKGELKNF 868 >gi|328781428|ref|XP_395392.3| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Apis mellifera] Length = 1194 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 304/972 (31%), Positives = 455/972 (46%), Gaps = 86/972 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59 M IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 4 MMTAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGIVDPNSDM 63 Query: 60 ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LT Sbjct: 64 AKLVRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICTWAWEFLT 123 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + L RLY+T + DEE ++W + GLS ++ DNFW M ETG Sbjct: 124 VKLKLSSDRLYVTYFGGDEKNNLKPDEECKQIWLSL-GLSPTHVLPGNMKDNFWEMGETG 182 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGP SEI +D+ +++ +EIWNLVF+QF ++N +LPK ID G Sbjct: 183 PCGPSSEIHYDRIGN-REAAHLVNQDDPDVLEIWNLVFIQFNRENDGNLKLLPKKHIDCG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDH 278 +GLER+ +++Q K+ NYD DLF L A ++ T + + +RV+ DH Sbjct: 242 LGLERLVSIIQNKSANYDTDLFMPLFDAIQKGTKAPSYQGKVGKEDINGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG +P N GRGYVLRRI+RRA+ YA L L+ + +G + Sbjct: 302 ARTITIALADGGVPDNTGRGYVLRRILRRAVRYAIEKLNAKPGFFGSLVNVVVDLLGDVF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PE+ + I + + E+ +F KTL RG LL+ + L IL GDVA++LYDT+G P Sbjct: 362 PEVTKDPQHIIDIINEEETQFLKTLSRGRNLLNRTIVKLESSNILPGDVAWRLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQ 456 D+ Q + +GL I + A+ S ++I + + Sbjct: 422 FDLTQLMAEEKGLKVDVIGYEEA-----KKEAQLISQNKSGEVDDQINLDIHAITELQNE 476 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 I + + + S + A+ + V+E SG++V ++ D Sbjct: 477 KI---KPTNDIPKYNYKVISNKIYEEYEFAPCFSTIIALRRAKTFVDEVSSGEEVGILLD 533 Query: 517 QTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 QT FYAE GGQ+ D G I D + G +H IV +G L+ + Sbjct: 534 QTNFYAEQGGQIYDEGFLTKIDDEDSEVHIKNVQVRGGYILHIGIVSQGKLKKNDKVFSN 593 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID RR L NH+ATH+L++AL ILG+ V Q GS + PD LRFD T+ +T+ +++ Sbjct: 594 IDTTRRRLLMSNHTATHVLNYALREILGTEVDQKGSLVAPDRLRFDFTNKGAMTTEQIRK 653 Query: 635 IEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE----------- 682 +E+ N+II +N V + N G A+ Y D VRVVS+ Sbjct: 654 VEEITNNIINENKMVYAKECNLGLAKTIQGLRAMFEETYPDPVRVVSIGIPVEDLEKNPL 713 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QD 739 D S CGGTH+ TG I IVSE +I GIRRI A+TG A Sbjct: 714 SSDALKTSVEFCGGTHLHYTGHIKNFIIVSEEAIAKGIRRIVALTGPEAIKAQKKTSMLQ 773 Query: 740 EKLKSL-----ASFLKVSQGNVVGRVEEIWEE-----------------YRKLQLIHAKR 777 L L A ++ + ++ E+ ++ + L+ I + Sbjct: 774 NYLDELQITIEADKNGINTKEHIKKIIELTDDVSHAIISSWKKDEIRKMLKDLKKILDDK 833 Query: 778 KLQLNVEDLSC---------HKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIML 827 + + + + + I+ ++K L S + ++ +L Sbjct: 834 ERAIKTAITNVVLDNIQQIIQQNIGCLVLVEILQAYSNTKALDSALKKIRTISPETSALL 893 Query: 828 VGISKE-KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + I + KK L V++ + A + + ++ G GGG+ AQ+ G N + Sbjct: 894 ISIDPDAKKIFALSSVSKFAINKGLKANEWIQEIVPLME-GKGGGKSESAQASGTNISCV 952 Query: 886 DQAIAGVASFLK 897 + I +F Sbjct: 953 TKLIYTAKNFAN 964 >gi|149640710|ref|XP_001506284.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 2 [Ornithorhynchus anatinus] Length = 963 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 320/968 (33%), Positives = 476/968 (49%), Gaps = 91/968 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L ++ L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + LR D K + S VKA+ ++ V+E +GQ+ VV D+ Sbjct: 471 -EELRARDLEVTDDSPKYNYRANASGSYGRFPSTVKALRREKTFVDEVSTGQECGVVLDK 529 Query: 518 TPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ+ D G + D T + G +V H G L+ + L ID Sbjct: 530 TCFYAEQGGQIFDEGYLVKDDDGSEDFTVKNVQVRGGYVLHIGTVYGNLKVGDQVRLFID 589 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ E+K E Sbjct: 590 EPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQEIKKTE 648 Query: 637 DNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 + N +I PV + G A+ Y D VRVVS+ Sbjct: 649 EIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELLEDPSSP 708 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK--- 741 G + S CGGTH+ ++G IVSE +I GIRRI A+TG A+ L + Sbjct: 709 AGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKALRKAESLKTA 768 Query: 742 LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHK 790 L L + +K +V + ++ E ++ K +L A + L+ ++DL Sbjct: 769 LSVLEAKVKAQTAPNKDVQKEIADLGETLATAVVPQWHKDELREALKALKKIMDDLDRAS 828 Query: 791 IADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 ADV + + S +K L + + ML + Sbjct: 829 KADVQKRVLEKTKQLIESQPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 888 Query: 832 KE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K + L V ++ ++ A + + + L G GGG+ AQ+ G N +A+ Sbjct: 889 NEAGKITCLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLPEAV 947 Query: 890 AGVASFLK 897 SF + Sbjct: 948 QLATSFAQ 955 >gi|57238881|ref|YP_180017.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58578810|ref|YP_197022.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|81557351|sp|Q5HC27|SYA_EHRRW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57160960|emb|CAH57866.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58417436|emb|CAI26640.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] Length = 887 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 382/913 (41%), Positives = 538/913 (58%), Gaps = 58/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS +R F++FF KNGH+ PSS L+ +DP+L+FTN+GMV FK FT + + Sbjct: 7 VSDLRRLFIDFFVKNGHQFFPSSQLVIKDDPSLLFTNAGMVQFKQRFTSVDDRSINTAVS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAWD +TKE LD++ Sbjct: 67 SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKERAIELAWDFVTKELALDKK 126 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLYITVY +D++AF LWKKIS S DKII+I TNDNFWSM GPCGPCSEIF+D GE + Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186 Query: 184 PGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLP E+G R+ EIWNLVFM++ + + E +LP+ IDTGMGLER+A V+Q + Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTEEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI+LFK LI S++ +G + + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 247 NYDINLFKALIAMSKKESGNS---SCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L YT+ LM + P L E M YPEL +AK LI L++E+E Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELFKAKDLIISILKTEEEN 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL R L LL+ L++L ++L+GD+ F+LYDT+G P+DI DI+ RG D Sbjct: 364 FKDTLVRALPLLEKELTYLSTGDVLSGDIIFRLYDTYGFPVDITLDIIKERG-IRFDEKG 422 Query: 418 FNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +E+Q++R+R + KIW +++ Y T+F+GYD + Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQ------------ 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-- 533 V S + ++V + V A G KV ++ D TPFYAEAGGQ DTG Sbjct: 471 -----------VQSKILSMVMNNDRNVTVANVGDKVSILMDITPFYAEAGGQQADTGLLS 519 Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 G +T+ + +G+++H IV+ G L + I+ R+ L Sbjct: 520 VVRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIVKSGSLIIGDIVSAEINSHRRKDLCA 579 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH+ L + +++ Q GS + D LRFD +++ +T ++K IE+ + D+I Q Sbjct: 580 NHSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQ 639 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N PV T I N ++A+ +GA AL KY N VRVV++ S LC GTHV TGE Sbjct: 640 NHPVETNICNLQNAMDNGAIALFTEKYDNHEVRVVNIGN------SKELCCGTHVKYTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I+SESSI GIRRIEA+TGQ A + Q++ L +A +K +V+ ++++I Sbjct: 694 IGCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKIN 753 Query: 765 EEYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 E ++L Q + A ++++ ++ KI ++NF+ +S V ++ + K++ Sbjct: 754 RENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSSVPIDVVRKF---IMKRLVKD 810 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +IML ++ V L + A D ++ V+ GGG +AQ Sbjct: 811 MIMLFSNVVNHNKIYVVGVGNSLHSKVKAADFVKIIGCVVKS-KGGGNAQLAQISTEYIA 869 Query: 884 KADQAIAGVASFL 896 + D I + L Sbjct: 870 EVD-VIQHIKDEL 881 >gi|332020821|gb|EGI61219.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior] Length = 1010 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 305/969 (31%), Positives = 451/969 (46%), Gaps = 86/969 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 N IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 42 MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 101 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK AW+ LT Sbjct: 102 KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKNEICAWAWEFLTD 161 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 L RLY+T + D+E LW + G+ A ++ DNFW M ETGP Sbjct: 162 VLKLPADRLYVTYFGGDEKSGLAPDDECKNLWLSL-GVPASHVLPGNMKDNFWEMGETGP 220 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ +D+ + + +EIWNLVF+Q+ ++ LPK ID G+ Sbjct: 221 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNRELNGSLKSLPKKHIDCGL 279 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ +V+Q K NYD D+F L A E+ TG + +RV+ DH Sbjct: 280 GLERLVSVIQNKRANYDTDVFMPLFAAIEEGTGAPPYQGKVGADDVNGIDMAYRVLADHA 339 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG +P N GRGYVLRRI+RRA+ YA L + L+ + +G +P Sbjct: 340 RTLTIALADGGVPDNTGRGYVLRRILRRAVRYATEKLNAKQGFFGSLVNVVVDLLGDVFP 399 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I E + E+ +F KTL RG LL+ ++ L + + GDVA++LYDT+G P+ Sbjct: 400 EVRKDPQSIIEIINEEESQFLKTLSRGRNLLNRTIAKLESADTVPGDVAWRLYDTYGFPI 459 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + +GL EE + +A+ S G ++I F + + T+ Sbjct: 460 DLTQLMTEEKGLKIDI-----AGYEESKKQAQLISQNKAGGVDDQINFDV---HAITELQ 511 Query: 459 GYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + K D KV + K + V A+ + V+E SG++V ++ D+ Sbjct: 512 KQGVKPTDDSPKYDYKVTTEIKYKEYEFAPCTGTVIALRRAKTFVDEVSSGEEVGILLDR 571 Query: 518 TPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 T FYAE GGQ+ D G + D + G +H V G LR + + Sbjct: 572 TNFYAEQGGQIYDEGFLVKVDDETTEIRIKNVQIRAGYVLHIGTVGEGTLRKGDKVHTNV 631 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + RR + NHSATH+L++AL +LG+ Q GS + PD LRFD T+ P+T +L+ Sbjct: 632 DTERRRFVMANHSATHVLNYALRKVLGTKADQKGSLVAPDRLRFDFTNKGPMTGGQLQDT 691 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E N++I +N + + N G A+ Y D VRVVSV Sbjct: 692 EQLANNVITENEKIYAKESNLAIAKTIQGLRAMFEETYPDPVRVVSVGIPVENLEKDPLS 751 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 S CGGTH+ T I IVSE +I GIRRI A+TG A L + Sbjct: 752 TAALETSVEFCGGTHLHYTSHIGNFTIVSEDAIAKGIRRIVALTGPEAAKALRTGMLLQR 811 Query: 744 SLASFL--------KVSQGNVVGRVEEIWEE-----------------YRKLQLIHAKRK 778 L+ F + + V + E+ EE + L+ ++ Sbjct: 812 QLSQFQASIEDDKSETNSKEYVREIVELTEEISHALIPAYWKDHMRNTLKNLKKSLDDKE 871 Query: 779 LQLNV---------EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLV 828 + ++ ++K L + ++ +L+ Sbjct: 872 RAAKATVATTVVQTAQSIIESKVGCQVLVEVLEAYSNTKALDQALKKIRAISPETSALLI 931 Query: 829 GISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 I + KK L V + + A + + L G GGG+ AQ+ G N + Sbjct: 932 SIDHDVKKIFALSSVPKSAVSKGLKANEWIQAITS-LMQGKGGGKSESAQASGSNIVCLN 990 Query: 887 QAIAGVASF 895 + ++ F Sbjct: 991 EIVSKANEF 999 >gi|268561116|ref|XP_002646367.1| C. briggsae CBR-ARS-2 protein [Caenorhabditis briggsae] gi|187029911|emb|CAP31121.1| CBR-AARS-2 protein [Caenorhabditis briggsae AF16] Length = 967 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 280/977 (28%), Positives = 453/977 (46%), Gaps = 98/977 (10%) Query: 1 MS--NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S +R+TF+EFF +K H + SSS+IP +DPTL+F N+GM FK +F G P Sbjct: 1 MKHLTASEVRSTFIEFFREKKNHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPN 60 Query: 58 Y-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112 + QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG YFK+ I AW+ Sbjct: 61 SDLAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWE 120 Query: 113 LLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164 LLT + + RLY++V+ DE EA ++W+ G+ ++I+ DNFW M Sbjct: 121 LLTTVYGIPAERLYVSVFGGDEANGVPADSEAREIWRS-VGVPEERILNFGMKDNFWEMG 179 Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 + GPCGPCSEI +D+ + + +EIWNLVF+QF ++ LP I Sbjct: 180 DVGPCGPCSEIHYDRIGNRD-ASHLVNADDPMVVEIWNLVFIQFNREEGGALKSLPAKHI 238 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275 D G+GLER+ V+Q+KT+NYD D+F+ + + + +G++ + + +RV+ Sbjct: 239 DCGLGLERLIAVMQDKTSNYDTDIFQPIFEEITKKSGVRAYTGHIGDEDKDGVDMAYRVV 298 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334 DH+R+ + ++DG P N GRGYVLRRI+RR + YA L L+P + + +G Sbjct: 299 ADHIRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFAALVPVVISILG 358 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDT 393 +PEL + + + + + E+++F KTL RG VL + L + GD+A++LYDT Sbjct: 359 DTFPELKRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDIAWRLYDT 418 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEK 451 +G P D+ Q + +GL+ +D +F A ++ + A + + L++K Sbjct: 419 YGFPADLTQLMAEEKGLS-VDETAFEDARKKAIETSSAGAGKFRDTLDLDVHALAELQQK 477 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 T + + AI + G+ V++ V+G++ Sbjct: 478 GIPT--------TDDSPKYAYSFTGEGSEAVYKFEPCVGKILAIRRDGKFVDQLVAGEEG 529 Query: 512 EVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 V+ D+T FYAE GGQ+ D G + + + G ++ G + Sbjct: 530 AVLLDRTNFYAEQGGQIYDVGVLSKSGDESNEFNVSNCQVRGGYIVLVGSAEGSFSVGDN 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + D ++ + NH+ TH+L++AL +L Q GS + PD +RFD T+ +T Sbjct: 590 VNQRFDEDRKQLIMKNHTGTHVLNYALRKVLA-DSDQKGSLVAPDRMRFDFTNKAAMTPE 648 Query: 631 ELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYE----- 684 ++K E+ +I V + + +G A+ Y D VRVV+V Sbjct: 649 QVKQAEEYAQQLINAKGQVYAKNSPLEDAKKINGLRAMFDETYPDPVRVVAVGTPVEQLL 708 Query: 685 ------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G + CGGTH+ + I + I SE +I GIRRI A+TG A + Sbjct: 709 QNPEAEAGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEADRAIARA 768 Query: 739 DEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ---------------LIHAKRKLQ-- 780 + L K ++ ++ E +K+Q ++K + Sbjct: 769 ERLEARLVDESKHAKNQEILSNKDKFKELQKKIQEIVDEANGAQLPYWRKDALRKKAKDV 828 Query: 781 --------LNVEDLSCHKIADVN------------FMSHIISEVDSKELKSVMDALQKKI 820 + K+ + S +SK + + + L+ Sbjct: 829 QKDMDGYSKAQQAAVAEKVLGEAKELAAAAEQPPVLVHVFASNANSKAIDNALKLLKDT- 887 Query: 821 QSGIIMLVGISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +M ++++ K L V + L+ + A + +L GG GGG+ AQ Sbjct: 888 --KAVMAFSVNEDTGKVLCLAKVDKSLVSNGLKANEWVNEVCTIL-GGKGGGKEANAQLT 944 Query: 879 GPNGNKADQAIAGVASF 895 G N +K D A+ F Sbjct: 945 GENVDKLDDAVELAQKF 961 >gi|24216106|ref|NP_713587.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str. 56601] gi|41018228|sp|Q8F0T4|SYA_LEPIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24197348|gb|AAN50605.1|AE011499_4 alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str. 56601] Length = 977 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 324/987 (32%), Positives = 480/987 (48%), Gaps = 110/987 (11%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y Sbjct: 4 KSVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D F D Sbjct: 64 TSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIEYALDCSVNHFGFD 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + ++++TVY +D+EA K+W G+ ++I R+ DNFW ++G CGPCSE++ D+G Sbjct: 120 KNKIWVTVYTDDDEAEKIWLSK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRG 178 Query: 181 ECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G G + +R++E WN+VF QF Q + L + IDTG GLER+A Sbjct: 179 IEKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------------------- 268 +LQE + YD + + +I E+++G+ YE Sbjct: 239 LLLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQ 298 Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325 RV+ DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L Sbjct: 299 DSRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKL 358 Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILN 383 + + + YPEL + I +T+ E+E F KTL+ GL ++ ++ I + Sbjct: 359 VDKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFS 418 Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443 G AF LY T+G P ++ ++I+ +GL D F + LE+ R +R Sbjct: 419 GADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTG 477 Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKE----DRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 + T+F+GY + G + K +D S+ Sbjct: 478 LNVD------KTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDS 531 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 + V GQ +V ++TPFY E GGQ+GD G ++ D QK+ + I Sbjct: 532 KQVSSLKEGQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSIIHF-GE 590 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 V G L ++ R +L +HS THLL+ AL T+LG HV Q GS ++P+ LRF Sbjct: 591 VLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEYLRF 650 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 D +H +TS E++ IE VN+ I +N PV T+ ++ EDA +GA A G KY +RVRVV Sbjct: 651 DFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERVRVV 710 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + G S CGGTHVS TGEI +I ESS AG RRIE + G + Sbjct: 711 QM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRF 765 Query: 740 EKLKSLASFLKVSQ------------------------------------------GNVV 757 +L L + N+ Sbjct: 766 SELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSENIA 825 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSV 812 ++EE + K++ A+R + N + + V +S I + D LK + Sbjct: 826 TKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSLKGL 885 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR 871 D L+ + ++ +++L + E AS++I + +L + +L + + ++L GG GGGR Sbjct: 886 SDNLKVREKNLLVILGSRNSEN-ASIVITCSSELTLKGIHCGNLIKTACELL-GGKGGGR 943 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ GG + AIAGV + K+ Sbjct: 944 PDMAQGGGKEKQNLESAIAGVINEAKQ 970 >gi|74213943|dbj|BAE29394.1| unnamed protein product [Mus musculus] Length = 968 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 312/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMRDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ V+E V+GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772 Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL++ +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A V + + S +K L + + ML + Sbjct: 833 SKAGVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|155371881|ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus] gi|151553989|gb|AAI48084.1| AARS protein [Bos taurus] gi|296478238|gb|DAA20353.1| alanyl-tRNA synthetase [Bos taurus] Length = 968 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAGEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F++ +R A+ S G G+G + I + + G Sbjct: 424 LTALIAEEKGL-VVDMDGFDE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ + VEEA +GQ+ VV D+T Sbjct: 478 LEATDDSPK----YSYHSDSSGTYVFESAVATVMALRRDRMFVEEASTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVRGGYVLHIGTLYGSLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I PV T + G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL + +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLCVVEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFRENLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSSPNQPLVILEVESGASAKALNEALKLFKMHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E + + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|58616869|ref|YP_196068.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] gi|75356993|sp|Q5FH56|SYA_EHRRG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58416481|emb|CAI27594.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] Length = 887 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 378/893 (42%), Positives = 533/893 (59%), Gaps = 57/893 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS +R F++FF KNGH+ PSS LI +DP+L+FTN+GMV FK IFT + + Sbjct: 7 VSDLRRLFIDFFVKNGHQFFPSSPLIIKDDPSLLFTNAGMVQFKQIFTSVDGRSINTAVS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW+ + KE LD++ Sbjct: 67 SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKEHAIELAWNFVIKELALDRK 126 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLYITVY +D++AF LWKKIS S DKII+I TNDNFWSM GPCGPCSEIF+D GE + Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186 Query: 184 PGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLP E+G R+ EIWNLVFM++ + + E +LP+ IDTGMGLER+A V+Q + Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTKEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI+LFK LI S++ +G + + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 247 NYDINLFKALIAMSKKESGNS---SCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L YT+ LM + P L E M YPEL++AK +I L++E+E Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELLKAKDMIISILKTEEEN 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL R L LL+ L++L ++L+GDV F+LYDT+G P+DI DI+ RG D Sbjct: 364 FKDTLVRALPLLEKELTYLSAGDVLSGDVIFRLYDTYGFPVDITLDIIKERG-IRFDEKG 422 Query: 418 FNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +E+Q++R+R + KIW +++ Y T+F+GYD + Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQ------------ 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-- 533 V S + ++V + V A G KV ++ D TPFYAEAGGQ DTG Sbjct: 471 -----------VQSKILSMVMNNDRNVTVANVGDKVSILMDVTPFYAEAGGQQADTGLLS 519 Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 G +T+ + +G+++H I++ G L + I+ R+ L Sbjct: 520 VVRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIIKSGSLIIGDIVSAEINSHRRKDLCA 579 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH+ L + +++ Q GS + D LRFD +++ +T ++K IE+ + D+I Q Sbjct: 580 NHSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQ 639 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N PV T I N +DA+ +GA AL KY N VRVV++ S LC GTHV TGE Sbjct: 640 NHPVETNICNLQDAMDNGAIALFTEKYDNHEVRVVNIGN------SKELCCGTHVKYTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I+SESSI GIRRIEA+TGQ A + Q++ L +A +K +V+ ++++I Sbjct: 694 IGCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKIN 753 Query: 765 EEYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 E ++L Q + A ++++ ++ KI ++NF+ +S V ++ + K++ Sbjct: 754 RENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSGVPIDVVRKF---IMKRLVKD 810 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +IML ++ V L + A D ++ V+ GGG +AQ Sbjct: 811 MIMLFSNVVNHNRIYVVGVGNSLHSKVKAADFVKIINCVVKS-KGGGNAQLAQ 862 >gi|149640708|ref|XP_001506178.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 1 [Ornithorhynchus anatinus] Length = 968 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 318/973 (32%), Positives = 476/973 (48%), Gaps = 96/973 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L ++ L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKEDRKVLCQK----PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + LR D + VKA+ ++ V+E +GQ+ VV Sbjct: 471 -EELRARDLEVTDDSPKYNYRANASGSYEFESPVATVKALRREKTFVDEVSTGQECGVVL 529 Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ+ D G + G + + T + G +V H G L+ + Sbjct: 530 DKTCFYAEQGGQIFDEGYLVKDDDGSEDKTEFTVKNVQVRGGYVLHIGTVYGNLKVGDQV 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ E Sbjct: 590 RLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQE 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682 +K E+ N +I PV + G A+ Y D VRVVS+ Sbjct: 649 IKKTEEIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELLE 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++G IVSE +I GIRRI A+TG A+ L + Sbjct: 709 DPSSPAGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKALRKAE 768 Query: 740 EK---LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785 L L + +K +V + ++ E ++ K +L A + L+ ++D Sbjct: 769 SLKTALSVLEAKVKAQTAPNKDVQKEIADLGETLATAVVPQWHKDELREALKALKKIMDD 828 Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L ADV + + S +K L + + M Sbjct: 829 LDRASKADVQKRVLEKTKQLIESQPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAM 888 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + E K + L V ++ ++ A + + + L G GGG+ AQ+ G N Sbjct: 889 LFTVDNEAGKITCLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGC 947 Query: 885 ADQAIAGVASFLK 897 +A+ SF + Sbjct: 948 LPEAVQLATSFAQ 960 >gi|300121464|emb|CBK21983.2| unnamed protein product [Blastocystis hominis] Length = 935 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 306/952 (32%), Positives = 452/952 (47%), Gaps = 88/952 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 + +R TF+EFF++ GH + SS ++P +DPTL+F N+GM +K IF GQ P Sbjct: 11 SAKVRQTFIEFFEERGHTFVKSSPVVPLDDPTLLFANAGMNQYKPIFLGQVDPSSPLAKL 70 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLTK + Sbjct: 71 KRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEGAINFAWELLTKVY 130 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY T ++ DEEA+ +W+ + L D I++ +DNFW M E GPCG Sbjct: 131 KLDPSRLYATYFEGSEEDGVPCDEEAYAIWR--THLPDDHILKGNKHDNFWEMGEVGPCG 188 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ +++ +EIWNLVFMQF + + LP +DTGMG Sbjct: 189 PCSEIHYDRI-GGRNAADLVNKDDPNVLEIWNLVFMQFSRDSTGALHPLPAKHVDTGMGF 247 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRS 281 ER+ ++LQ K +NYD D+F L +A V+G+ + +RV+ DH+R+ Sbjct: 248 ERITSILQNKMSNYDTDVFLPLFKAIHAVSGVSEYTGLVAGQNGAQKDMAYRVVADHIRT 307 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 + I DG P+N GRGYVLRRI+RR + Y + L L+P + M SA+PEL Sbjct: 308 LTMAITDGAAPSNTGRGYVLRRILRRGVRYGQQILKCKPGFFSQLVPTVVENMKSAFPEL 367 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPL 398 + ++E + E+ F +TL++GL +++ GDVAF LY T G P+ Sbjct: 368 EEKMCFVQEVILDEELSFNRTLEKGLKRFAQEAEACQASGAKVITGDVAFFLYGTLGFPI 427 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + + GL +D+ FNQA+E R A+ + TT + Sbjct: 428 DLTELMAEEAGLK-VDMEGFNQAIERARMEAKTNKKNGAEQTTLVM-------------- 472 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--AVSGQKVEVVFD 516 + + S K V P + S V A + E A V VV Sbjct: 473 --EAEQVSHLQKSGVPVTDDLPKYTWFETLESEVVAFYGADKSFPEQIAPESGVVGVVLK 530 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 QTPFYAE+ GQ+ D G G + V +H +VE+G LR ++ ++D Sbjct: 531 QTPFYAESEGQIADRGSLSGANGSFSVQQVLSYGGY-VLHIGVVEQGTLRLHDAVTCSVD 589 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 Y R ++ NH+ TH+++ AL +L + V Q GS + LRFD H+K ++ A+L IE Sbjct: 590 YDYRLLIAPNHTLTHVMNWALRRVLQTEVDQKGSLVDDQKLRFDFNHTKAVSPAQLSEIE 649 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTK-YNDRVRVVSVEYEDGGVHSSALC 694 VN+ + L V T++ ++A A+ G Y R +S C Sbjct: 650 RLVNEKVHDALKVFTKVCPIDEARKICSLRAVFGEAGYPSNPR--------WMDYSVEFC 701 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTH+S+ + IV E SI GIRRI AITG RA ++ ++ L+ + Sbjct: 702 GGTHLSNLAQAKFFAIVEEGSISKGIRRIVAITGDRANESIVLANQIDGMLSHARSLHGK 761 Query: 755 NVVGRVEEIW-----------------EEYRKLQLIHAKRKLQLNVEDLSCH-------- 789 + V E+ EE +KL+ + + + L Sbjct: 762 ELEAAVAELQQTIPTAVISVATKATFKEELKKLEKTMMAERKEQIAKQLESAIAEAEKVV 821 Query: 790 ----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 + + + + + +DS +M +++ + + K A +V E Sbjct: 822 KEVKEKQEGGRVFYTVEGIDSSNASKLMQKIRELDSESSYFIFSVDTAKVAMYALVAKEK 881 Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 F+A A V GG GGG P AQ + + + A A LK Sbjct: 882 ASKTFSAKTWISEVAAVC-GGKGGGSPMQAQGQSKDPSNVEAAFAKAEEILK 932 >gi|242798694|ref|XP_002483222.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC 10500] gi|218716567|gb|EED15988.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC 10500] Length = 1002 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 297/969 (30%), Positives = 466/969 (48%), Gaps = 95/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R+ F+++F++ GH +PSSS++P DPTL+F N+GM +K+IF G P Sbjct: 53 TAERVRSEFIDYFKERGHTFVPSSSVVPHADPTLLFANAGMNQYKSIFLGTVDPQSDFAH 112 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI +W+LLTK Sbjct: 113 LKRAVNSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAITYSWELLTKV 172 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F LD RLY+T ++ D EA ++W+ G+ D I+ DNFW M + GPC Sbjct: 173 FGLDPSRLYVTYFEGNESGGLEPDLEAKEIWRN-VGVPEDHILPGNMKDNFWEMGDQGPC 231 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 232 GPCSEIHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 290 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L + +++ G + +RV+ DH+R Sbjct: 291 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAPEYQGRFGAEDADGVDTAYRVVADHVR 350 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +P Sbjct: 351 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVEQMGVMFP 410 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 E+ + + + E L E+ F KTLDRG + + L+G ++LYDT G Sbjct: 411 EIKEKQAEVMEVLNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 470 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL+ ID F + R +A+ S G E + + + Sbjct: 471 PVDLTQIMAEERGLS-IDEAEFEE----ARLKAKEASKGQKKAAAETVKLDVHDLG---- 521 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513 K + + SIVKAI ++ G+++ V Sbjct: 522 ----------KLDNMSDVPKTDDSSKFDSPRIESIVKAIYYSKNFIQSTADVPEGEQIGV 571 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG DG + G +H ++ G L S++ Sbjct: 572 ILDRTNFYAEQGGQENDTGIISIDGKAELEVGDVQSYGGYVLHTGFIKYGSLAVGDSVMC 631 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D + R+ + NH+ TH+L+ AL ILG ++Q GS + + LRFD +H ++ EL Sbjct: 632 EFDDRRRQPIRNNHTGTHILNFALREILGDGINQKGSLVAAEKLRFDFSHKAAVSDKELD 691 Query: 634 SIEDNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681 IE + I QN + +G A+ G Y D VR + V Sbjct: 692 QIERKSTEYIRQNCGVYSKEVPLATAREITGVRAVFGETYPDPVRVVSVGVEVEEILKDV 751 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH------L 735 + S CGGTHVS +GEI L I+ ES I GIRRI A+TG A Sbjct: 752 KDPRWNDISIEFCGGTHVSRSGEIRELVILEESGIAKGIRRIIAVTGDEALQAQLTAVEF 811 Query: 736 MGQDEKLK----------------------SLASFLKVSQGNVVGRV-EEIWEEYRKLQL 772 + EKL+ ++++ K ++ R+ +++ ++ + LQ Sbjct: 812 EKRLEKLRTLEHGPAKEMEMKQVQLELNQLAISAVQKAKFRDLFARINKQVLDDQKALQK 871 Query: 773 IHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + K+ L + D F++ + + ++K + ++ ++ K+ + + Sbjct: 872 VELKKAQDLIKAYFGAEENKDRTTFVTKLPATSNAKVVSESINFIKSKMADKTVYFIAPD 931 Query: 832 -KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K + V + + + + A + + + GG GGR A G N +K D+ + Sbjct: 932 PSGNKVAHGCHVAKAASELGLSPSEWANVVSGAV-GGKAGGRAPTAIGNGTNVDKVDEGV 990 Query: 890 AGVASFLKK 898 A +L+K Sbjct: 991 ALATEYLQK 999 >gi|308183349|ref|YP_003927476.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4] gi|308065534|gb|ADO07426.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4] Length = 847 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 322/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRH 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECCAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839 >gi|213966126|ref|ZP_03394313.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46] gi|213951224|gb|EEB62619.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46] Length = 886 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 329/910 (36%), Positives = 482/910 (52%), Gaps = 61/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR F++ F K GH +PS+SL+ +DP L+F N+GMVPFK F G E P + Sbjct: 1 MQTHEIRNRFIQHFVKAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGNETPDFSTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116 T++QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWSLLTGAVEDG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +L++TVY +D+EA +W + G+ ++I R DN+WSM GPCGPCSEIF Sbjct: 116 GFGIPAEKLWVTVYLDDDEAHDIWHEKVGVPEERIQRRGMADNYWSMGVPGPCGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 +D+G G G + +RYIEIWNLVFM+ E+ + + LPK +IDTGMG+ Sbjct: 176 YDRGPEY-GADGGPEADEDRYIEIWNLVFMENERGEGTGKDSFEILGPLPKKNIDTGMGI 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ DL + +I +E++TG KY N+ N RVI DH R+ L+ D Sbjct: 235 ERVAFLLQGVDNVYETDLLRPVIDEAEKLTGSKYSSNHQDNIRFRVIADHSRTGLMLMLD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N RGY+LRR++RR + ARLLG P++ L+ M +YPE+ + I Sbjct: 295 GVTPSNSDRGYILRRLLRRIIRSARLLGANGPVLEKLIGIAAETMTPSYPEIAENWNRIR 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E++ F KTL G L + + +L+G AF L+DTHG P+D+ ++ Sbjct: 355 RVAVAEEKAFTKTLSAGEELFERAATKAKAEGKTVLSGHDAFTLHDTHGFPIDLTIEMAE 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL ID F++ + EQR+RA+A S T+ + T F GYD L Sbjct: 415 EAGLT-IDREEFDREMAEQRARAKADSQAKKQSHTDLHVYREFIDEHPTSFTGYDRLAD- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + I+ G+ A G ++EV+ D+TP YAEAGG Sbjct: 473 ----------------------ESTILGIIADGQKQSFAAEGDEIEVILDRTPLYAEAGG 510 Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G G + I DVQK + +++H IV G +S +D Q R Sbjct: 511 QLADRGRIVTDSGAVVHINDVQKVGKKLWLHKGIVTAGEFTPGVSAEALVDEQWRHGARQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 H+ATHL+H AL +LG V+Q GS P LRFD + + +T +L+ IE N+ + Sbjct: 571 AHTATHLIHGALRQVLGDTVTQAGSMNKPGYLRFDFKYGEQLTPEQLREIEQITNEAVDN 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T M E+A A+GA AL Y D VRVV V GG S LCGGTHVS + +I Sbjct: 631 DWAVNTAEMPLEEAKATGAMALFNENYGDIVRVVEV----GGPFSIELCGGTHVSHSSQI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + ++ ESS+ +G+RRIEA +G + +L + + LA+ K + R+ + E Sbjct: 687 GPVAVLGESSVGSGVRRIEAYSGMDSFRYLSTERLLAERLATEFKAPSAELPDRIAALAE 746 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819 + + + A K + + S I DV ++ + + K+++S+ + L K+ Sbjct: 747 KLKAAEKQLADFKAGQLLANAASHLESARTIGDVTYLGLKLPDGTEMKDIRSLANDLAKR 806 Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + +I L+ + K V+++ ++R A DL +L +GG G GG+P MAQ Sbjct: 807 LGDRPSVIALIS-NASGKVPFAASVSDEAVNRGIKAGDLVKLMGAEVGGKG-GGKPAMAQ 864 Query: 877 SGGPNGNKAD 886 G + + D Sbjct: 865 GSGSDASGID 874 >gi|37903407|gb|AAP57355.1| Alanyl-tRNA synthase [Mus musculus] Length = 968 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ V+E V+GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHEGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772 Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL++ +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|320103497|ref|YP_004179088.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644] gi|319750779|gb|ADV62539.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644] Length = 874 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 316/916 (34%), Positives = 476/916 (51%), Gaps = 67/916 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R ++L+FF G L PS L+P +DPT++FT +GM FK F G P ++ Sbjct: 1 MTTDELRQSYLDFFVSKGCVLKPSDVLVPRDDPTVLFTPAGMNQFKREFMGLGDPTFKKA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+R G D+DNVGRT H TFFEMLGNFSFG YFK AI AW+ LTK +D Sbjct: 61 VTCQKCLRTG----DIDNVGRTAFHETFFEMLGNFSFGDYFKREAIHWAWEYLTKILKID 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIF 176 RL +TVY +D+EAF +W GL + +I R+ DNFW S+ G CGPCSEIF Sbjct: 117 PDRLSVTVYLDDDEAFAIWNNEIGLPSSRITRMDEADNFWPASAPSLGPNGVCGPCSEIF 176 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 F G + +EIWNLVF QF + ++ LP +IDTGMGLER A Sbjct: 177 FH-------------GNGPKEVEIWNLVFTQFNRVGFRQLEPLPHKNIDTGMGLERAAAC 223 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ + DLF+ ++ +V Y+ + V R + DH R+ +F I + + P+N Sbjct: 224 LQGVPTVFMTDLFRPIVARVAEVLDQPYQADSPDGVRMRRMADHARALTFCIHENVRPSN 283 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 E +GYVLRR++RRA+ LG EP + L P + +M YPE++ + I+ +R E Sbjct: 284 EKQGYVLRRLLRRAVLDGYHLGRREPFLYQLPPIVAQQMSGPYPEVVGSVPRIQAVIREE 343 Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E F + L+ G+ LL+ + ++L+G AFKL+ THG+P+++++ + R L Sbjct: 344 EEDFLRNLEHGMKLLEDTFRKTKAAGSDVLDGSTAFKLHATHGIPIEVVESLAAERELT- 402 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EE +R S + K T+F+GY+ R Sbjct: 403 VDRPGFEAAVEEHARISRGTSEAAAVFEVGPLDELKKAHPQGTRFLGYETTR-------- 454 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ----KVEVVFDQTPFYAEAGGQL 528 + V ++Q +V+ +G + +V DQ+PFY E+GGQ+ Sbjct: 455 ---------------ATGKVIGLIQGPALVDSVAAGTGDHAQAAIVLDQSPFYGESGGQV 499 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG G L + +K +H VE G + ++ +D + R + HS Sbjct: 500 GDTGRLTGPDGFLFLVTDTQKKNDFLLHLGRVEHGAIVPGATVEAEVDAERREAIRRAHS 559 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLHHAL LG H Q GS + PD LRFD + + + LK+IE VN+++ + P Sbjct: 560 ATHLLHHALHKHLGEHAQQAGSKVEPDRLRFDFANPEAVGRDRLKAIEATVNNLVLGDAP 619 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + IM + A GA AL G KY + VRVV++ G +S LCGGTH+ +I + Sbjct: 620 ITWTIMPLDQARKLGAMALFGEKYPENVRVVTM-----GDYSRELCGGTHLDHVSQIGVF 674 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SE S+ AG RRI A+TG+ A +L +D L+ +A+ LKV RV + EE + Sbjct: 675 AILSEESVAAGTRRITALTGRAALDYLKERDAVLEEIAATLKVPVAQAPARVAALLEEVK 734 Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ +RK + + ++ V ++ +I +E++ + D ++KK Sbjct: 735 TLKKQATQRKSAQTLGSIDSFLNEAVEVDGVQLVARVIDGGTVEEMRQLCDVMRKKAGER 794 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + +L+G E K +++ T DL+ + NA ++ A ++GGGG GG+P MA +GG Sbjct: 795 LAILLGSVVEGKVNLVAAFTPDLVAQRKANAGQWLKILAPIVGGGG-GGKPEMATAGGKL 853 Query: 882 GNKADQAIAGVASFLK 897 +K + + L+ Sbjct: 854 PDKLPEVVRRAPETLR 869 >gi|301791808|ref|XP_002930871.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Ailuropoda melanoleuca] Length = 968 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 310/969 (31%), Positives = 467/969 (48%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGDDLIMLDIYAIEELRE-KG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + V A+ + VEE +GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G LR + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ +VSE +I GIRRI A+TG A+ L + Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKN 772 Query: 744 SLASFL-KVSQGNVVGR--------------------------------VEEIWEEYRKL 770 SL+ KV V + +++I ++ + Sbjct: 773 SLSIMEAKVKAQTVPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++++ + L + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + ASF + Sbjct: 952 LQLAASFAQ 960 >gi|315604258|ref|ZP_07879324.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313964|gb|EFU62015.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] Length = 901 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 308/933 (33%), Positives = 486/933 (52%), Gaps = 71/933 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IRT +L++F GH + PS SLI P+++FT +GMVPF G E + Sbjct: 1 MRTSEIRTRWLDYFASKGHHVAPSVSLISPE-PSILFTVAGMVPFIPYILGTESAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 TSVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDYAWELLTTPQARG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T++++DE +F W K G+ +++ R+ + WS + GP G C EI Sbjct: 116 GYGLDGDRLWMTIWEKDEVSFNHWTKTIGVDPERVQRLPFEEISWSTGQPGPAGACCEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGL 230 +D+G P G P G+R++EIWNLVF +F + + R L K +IDTG GL Sbjct: 176 YDRGPAYGPDGGPIVDVAGDRFLEIWNLVFDEFVRGEGEGRDFELVGTLDKTAIDTGAGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279 ER+A ++Q+K N Y+ID +I+A+++++G Y ++ V RV+ DH+ Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIEAAQEMSGKTYGLGAAGPNAGGAYDDDVRMRVVADHV 295 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS+ LI+DG+ P N+GRGYVLRR++RRA+ RLLG + + LL A M +YPE Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVEDAALPTLLTASKNVMSLSYPE 355 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGL 396 L I++ +E++ F +TL G +LD ++ +++G AF L+DT+G Sbjct: 356 LDSNWETIQDVAYAEEDAFRRTLSAGTTILDAAVASAKETTGAPVISGASAFSLHDTYGF 415 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGA 454 P+D+ ++ +G +D F + EQ+ RARA + +G T+ F EK G Sbjct: 416 PIDLTLEMAAEQG-VAVDEEGFRSLMAEQKERARADARSKKTGHTDVRVFHEIEKQMGGG 474 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + F+GY + V+A++ G A + +VEV+ Sbjct: 475 STFLGYTE-----------------------EAADATVQALLVDGASAPAASAPAEVEVI 511 Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+TPFYAE GGQL D G + G +++ DVQ G+ VH + G + Sbjct: 512 LDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGTMSVGEKAYA 571 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ID R ++ H+ATH+++ L +++ +Q GS +P LRFD HS + +++L Sbjct: 572 QIDGARRLAIARAHTATHMVYAGLRSVVSKDATQAGSENSPSRLRFDFRHSSAVDASQLG 631 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE VN+ +A++L V T M+ ++A A GA AL G KY RVRVV++ L Sbjct: 632 DIEALVNEKLAEDLTVTTEEMSLDEAKAQGAIALFGEKYGSRVRVVTIGD----GFDREL 687 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHV +TG I + ++ E SI +G+RRI+A+ G A + + L+ + Sbjct: 688 CGGTHVPTTGHIGRITLLGEGSIGSGVRRIDALVGDGAYEFQAKEHALVAQLSHLVGGRA 747 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVD-SK 807 + R+E + + R + K + + + S + VN + ++ + + Sbjct: 748 EELPERIENLLAKLRDSEKELEKVRTEQALSRGSELAASARAVGAVNLVGAVVGAMPSAD 807 Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864 L+++ ++ ++ + G ++ +G K S+++ E + A L R K +G Sbjct: 808 ALRTLALDVRDRLGNERGAVVALGGIVAGKPSLVVATNEAAREHSIKAGALVRAVGKHMG 867 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGG GGR +AQ GG + AI + ++ Sbjct: 868 GGG-GGRDDVAQGGGTKPEGLEAAIDAIRREIE 899 >gi|251773418|gb|EES53967.1| alanyl-tRNA synthetase [Leptospirillum ferrodiazotrophum] Length = 884 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 336/874 (38%), Positives = 476/874 (54%), Gaps = 45/874 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +F FF+ GH +PSSSLIP DPTL+FTN+GMVPFK+ F G E P Sbjct: 1 MDSLRIRNSFHGFFEGVGHRRVPSSSLIPPGDPTLLFTNAGMVPFKDAFLGTEPPPAPRC 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 ++Q+CVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI AW+ LTK L Sbjct: 61 VSIQRCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAIAFAWEYLTKTLGLS 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L++TV+ +D+EA LW+ ++G+ +I+R+ DNFW M TGPCGPCSEI DQG Sbjct: 121 PSVLWVTVFTDDDEAASLWQSVAGVDPSRIVRLGEKDNFWQMGNTGPCGPCSEILVDQGS 180 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVFMQ+++ + LP+ SIDTGMGLER+A+VLQ Sbjct: 181 AFSCGRPTCAVGCDCDRYLEIWNLVFMQYDRNDAGILTPLPRPSIDTGMGLERLASVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N++ DLF L++A + T + Y +G +RVI DH+R+S+FL+ +G++P+NEG Sbjct: 241 SQSNFETDLFLPLMEAIGKKTRIPYGRGQGEKDFAYRVIADHVRASTFLVWEGLVPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR +RRAM ++ L P + L M + YPEL + L SE+E Sbjct: 301 RGYVLRRFIRRAMQFSLDLALPTPFLPDLSRRFAELMAAPYPELAAGMDRVVTVLASEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF KTL+ GL L+ + + +L G+ F LYDTHGLP+D++ D G+ +D Sbjct: 361 RFMKTLETGLPLVQELARSARERGETVLTGEELFWLYDTHGLPVDVVGDWAAPLGVT-LD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + EQ+ + R +G+ +F GY+ L Sbjct: 420 TEGFAVRMGEQKEQGRRSW----TGSRASFPLPASRLSSPVRFEGYERLESP-------- 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + + V+ G+++ V D +PFY E GGQ+GD G Sbjct: 468 ---------------ARLLLLASGESEVQSVREGEEIWAVTDVSPFYPEGGGQVGDQGRL 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + G + I+ + G V G++ ++ L +D R ++H+ATHLLH Sbjct: 513 VAPGGIVSISGAYRPYPGWIALRGKVLSGVVTQGETVQLQVDRSLRLGARVHHTATHLLH 572 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + PD LRFD +H PIT +++ IE VN I + PV Sbjct: 573 AALRKVLGSHVRQAGSLVLPDRLRFDFSHGAPITDGQIEEIEGMVNRWIGEGAPVEISEK 632 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N+ DA+ASGA A KY DRVRVV + S LCGGTH ST EI +I+SES Sbjct: 633 NKADALASGAMAFFDEKYGDRVRVVEIPG-----MSVELCGGTHALSTSEIGSFFILSES 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG RRIEA+ G A G +L +A LKVS G ++ R+ E +++ Sbjct: 688 GVAAGTRRIEAVAGAAATRTAAGWRAELHRIAGDLKVSPGRILDRIAAEKREREEIEKEL 747 Query: 775 AKRKLQ---LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K + L + L + +V + ++ D +L+ MD L+ +I SG ++L G Sbjct: 748 SRSKSRLFDLETQSLLDESMMVGEVRILVAVVESRDLADLRLRMDVLKGRIPSGAVILAG 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 + + + +L T DL F R A+ L Sbjct: 808 KAGDDRVLLLGWATPDLEKTFPVNTWVRSMAQTL 841 >gi|126305114|ref|XP_001362507.1| PREDICTED: similar to Alanyl-tRNA synthetase [Monodelphis domestica] Length = 968 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 315/971 (32%), Positives = 469/971 (48%), Gaps = 96/971 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRRRFIDFFKRNQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPAHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LNRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPVDRLYVTYFGGNEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRIGDRD-AAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ G + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARQYTGCVGADDVDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNAKRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDHIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + LR D + VKA+ ++ V+E +GQ+ VV Sbjct: 471 -EELRIKGLQVTDDSLKYNYQSDSSGTYEFENPVATVKALRREKMFVDEVSTGQECGVVL 529 Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ+ D G + + + T + G +V H G LR + Sbjct: 530 DKTCFYAEQGGQIYDEGYLVKEDDSSEDKTEFTVKDAQVRGGYVLHIGTVYGSLRVGDRV 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ + Sbjct: 590 RLYIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQ 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682 L+ E N +IA PV + G A+ Y D VRVVS+ Sbjct: 649 LRETETIANGMIAAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVAKLLD 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++ L IVSE +I GIRR+ A+TG A+ L D Sbjct: 709 DPSGPAGSLTSVEFCGGTHLQNSSHAGALVIVSEEAIAKGIRRVVAVTGVEAQKALRKAD 768 Query: 740 EK---LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785 L L + +K ++ + + E +++K +L + L+ ++D Sbjct: 769 SLKSSLSELETKVKAQTAPNKDIQREISDFGELLATTVVPQWQKDELRENLKALKKVMDD 828 Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L ADV + + S +K L + + M Sbjct: 829 LDRANKADVQKRVLEKTRQLIESHPNQPLVIMEMESGASAKALNEALKLFKTHSPETSAM 888 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + E K L V ++ ++ A + + + L G GGG+ AQ+ G N Sbjct: 889 LFTVDSEANKIICLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGC 947 Query: 885 ADQAIAGVASF 895 +A++ SF Sbjct: 948 LQEALSLATSF 958 >gi|257068797|ref|YP_003155052.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810] gi|256559615|gb|ACU85462.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810] Length = 902 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 323/931 (34%), Positives = 508/931 (54%), Gaps = 71/931 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L FF K HE++PS+SL+ +DP+++FT +GMVPF G E Y Sbjct: 1 MRTSEIHRRWLAFFAKKDHEIVPSASLV-SSDPSILFTIAGMVPFIPYIVGTETAPYPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND++NVGRT RH TFF+M GNFSFG YFK+ AI +W+ LT Sbjct: 60 ASVQKCIRT----NDIENVGRTTRHGTFFQMAGNFSFGDYFKQGAIDYSWEFLTTPQDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL+ TV+++DEE+++ ++ GL +++R+ + FW + GP GPC E Sbjct: 116 GLGFDPERLWFTVWEQDEESYRHVTEVIGLDPQRVVRLPREEIFWDTGQPGPAGPCGEWH 175 Query: 177 FDQGECIPGGL--------PGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KM 222 FD+G PG + +RYIEIWNLVF Q+ + + P + Sbjct: 176 FDRGPEHGPEAVTGTVPEWPGDEQAEDRYIEIWNLVFDQYLR-GEGSGKDYPLLGELEQK 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280 SIDTG+G+ER+A +LQ K N Y+ID +I+ ++++TG +Y + V+ R+I DH+R Sbjct: 235 SIDTGLGVERVAFLLQGKQNMYEIDQIFPVIEKAQELTGRRYGAVEEDDVHLRIIGDHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S+ L+ADG+ P NEGRGYVLRR++RRA+ RLLGYT+P M LLP + M +YPEL Sbjct: 295 SALMLVADGVRPGNEGRGYVLRRLIRRAVRSMRLLGYTQPSMPQLLPISHSLMVESYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPL 398 I E + +E+E F +TL+ G + +GV+ +L G+ AF+L+DT+G P+ Sbjct: 355 EADFARISEIVHAEEEAFRRTLETGTTIFEGVVGAVKEEGGRVLPGEDAFRLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQ 456 D+ ++ GL +D +F A++EQR RARA + +G T+ +S L ++ G Sbjct: 415 DLTMEMASEVGL-QVDAEAFRSAMQEQRERARADAAAKKAGHTDTALYSRLLSQRGGEVP 473 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F+GY + V++ V++++ G++V+ + +VEVV Sbjct: 474 FVGYTE-----------------------DTVATTVESVLVDGQLVDTVHAPAQVEVVLA 510 Query: 517 QTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 TPFYAEAGGQL D G ++ G +++ DVQK G+ VH + G L S + TI Sbjct: 511 TTPFYAEAGGQLADQGQISLTGGGLIEVDDVQKPVRGLIVHRGRLLEGELAQGASAIATI 570 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R ++ H+ATH++H +L LG +Q GS +P +RFD + + + + L+ I Sbjct: 571 DVARRGAIARAHTATHMVHESLREELGGSATQAGSENSPGRMRFDFRYGQAVPKSVLEQI 630 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN ++ L V + M+ ++A A GA AL G KY D VRVVS+ GG S LCG Sbjct: 631 EGRVNTLLQDELTVTDQQMSLDEAKALGAQALFGEKYGDIVRVVSI----GGDWSRELCG 686 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QG 754 GTHV STG I + ++ E+SI +G+RR++A+ G A H + + L+ LKV Sbjct: 687 GTHVDSTGAIGTVQLMGEASIGSGVRRVDALVGLSAYRHQAKEHALVSQLSELLKVGAAE 746 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKE 808 + RV + + + ++ A + Q + S +A V ++H + + + Sbjct: 747 ELPERVRALTQRMKDMEKQLAALRGQQLQAEAGKLVESASDVAGVRLIAHDAGEGIAAGD 806 Query: 809 LKSVMDALQKKIQSGIIMLVGIS--KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 L+++ L+ ++ + + + ++ +A+++I +R A + R +A+ + G Sbjct: 807 LRTLALDLRSRLGEDVPVTIAVAGHDGGRAALVIATNATARERGLAAGTMLRGAAEAM-G 865 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P +AQ GG + A+ V + Sbjct: 866 GRGGGKPDLAQGGGGEPARIPAALTAVREAI 896 >gi|256832583|ref|YP_003161310.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603] gi|256686114|gb|ACV09007.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603] Length = 895 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 329/920 (35%), Positives = 498/920 (54%), Gaps = 64/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L+FF+ H ++PS+SLI DP+++FT +GMVPF G++K + Sbjct: 1 MRTAEIRHRWLQFFESRDHHVVPSASLISP-DPSVLFTIAGMVPFIPYMLGEQKAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R G D+D VG+T RH TFF+M GNFSFG YFK AI AW+ +T Sbjct: 60 TSVQKCIRTG----DIDEVGKTTRHGTFFQMNGNFSFGDYFKREAITFAWEFITGSEESG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +++TVY +D+EA LW+ ++GL ++I R DNFW + GP GPCSEI+ Sbjct: 116 CLGFDPELIWVTVYHDDDEAASLWRDVAGLPEERIQRRGKKDNFWHTGQPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------EQQNKQERFILPKMSIDTGMGL 230 D+G G G + +RY+EIWNLVFMQ+ +++ L + +IDTGMGL Sbjct: 176 VDRGPQY-GAEGGPVVDEDRYLEIWNLVFMQYSLENVTSKESFDIVGPLRQHNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A + Q N Y+ID +I+A+E+++G Y NN + RV+ DH+RSS LI D Sbjct: 235 ERVALLKQGVNNMYEIDEVYPVIEAAEKLSGRTYGENNDDDVRFRVVADHIRSSLMLIGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRR++RR++ RLLG TEP + L+ A M ++YP L + I Sbjct: 295 GVRPSNEGRGYVLRRLLRRSIRAMRLLGVTEPAIPALITASKEAMKASYPYLEENFATIL 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDI 404 T +E++ F +TL++GL +LD +S L G+ AF L+DT+G P+D+ ++ Sbjct: 355 ATASTEEDVFRRTLNQGLTILDAAVSDAKSQGGSSAALTGEQAFTLHDTYGFPIDLTLEV 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKY-GATQFIGYDL 462 +G +D +F ++EQR RARA +L G + ++ SL +F+GY Sbjct: 415 AAEQG-VSVDETAFRSLMQEQRDRARADALAKKQGHGDLGVYQSLLASMAAPVEFLGYTD 473 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + V A++ G+ V + VE+V D+TPFYA Sbjct: 474 AQAP-----------------------AKVTALLVDGQPVATVTAPADVEIVLDRTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQL D G + + I DVQ G+ VH + G L ++V ID RR Sbjct: 511 EKGGQLADHGRVYSEQGATVDIADVQSPVSGLSVHRGALVDGTLSVSDAVVAEIDVVRRR 570 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 Q+S H+ATH++H AL LG+ +Q GS +P+ +RFD S+ + ++ L IE VND Sbjct: 571 QISQAHTATHMIHKALQETLGADSTQAGSENSPNRIRFDFRQSQAVPTSALAEIEGRVND 630 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + +NL V + + +DA A GA AL G KY DRVRVVS+ GG S LC GTHV + Sbjct: 631 QLRENLEVTDIVTSLDDARAMGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVPT 686 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 +GE+ ++ I+ E+SI +G+RR++A+ G A H + + L+ L V + RVE Sbjct: 687 SGELGIVTILGEASIGSGVRRVDALVGAGAYGHHARERALVSQLSGLLNVRSEELPTRVE 746 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDA 815 + + R + + + S + V +++ EV L++++ Sbjct: 747 SLVGKLRDAEKELTTLRQAQLLARAGEIASSAATVGAVRVVTYDAGEVATPDALRTLVLD 806 Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 ++ ++ ++ + G+SK + V+ A L R +A VLGGGG GG+ Sbjct: 807 VRGRLGDSQGSVVAVAGVSKGRPVVVIATNASAREAGVKAGALVRTAAGVLGGGG-GGKD 865 Query: 873 HMAQSGGPNGNKADQAIAGV 892 +AQ GG N +A+A V Sbjct: 866 DLAQGGGQNPTAITEALAAV 885 >gi|330752589|emb|CBL87535.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium] Length = 873 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 324/919 (35%), Positives = 485/919 (52%), Gaps = 73/919 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF+ HE++ S+ ++ +DPTLMFTN+GM PFK F G +P + Sbjct: 1 MKSF-DIRKQFLDFFESKAHEIVSSAPMVIKDDPTLMFTNAGMNPFKEFFLGFAQPTSKR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFK+ AI+ AW+LL + + Sbjct: 60 LADTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLIDIYKI 119 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D RLY+T+++ D EA+ LWK I L D+I+ + DNFW M + GPCGPC Sbjct: 120 DAERLYVTIFEGSLGEKLEKDTEAYNLWKAI--LPEDRILLGSKKDNFWEMGDQGPCGPC 177 Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G +++ + IE+WNLVF++F + LPK IDTGM Sbjct: 178 SEIHIDTRPKTEWEKTPGSALVNKDHPQVIELWNLVFIEFNRNADGGLEKLPKKHIDTGM 237 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ VLQ K +NYD D+F +I E++T Y + V RVI DH+R+ F I Sbjct: 238 GFERLCMVLQGKISNYDTDVFTPIINEIEKITKYNYGVSEKSDVAIRVIADHIRTVFFAI 297 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N G GYV+RRI+RRA+ Y L +P + L+ + ++ +PEL + K Sbjct: 298 ADGQLPSNIGAGYVIRRILRRAIRYGFTFLDQKKPFIHLLVEIISKQLSDIFPELKKEKK 357 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 L + ++ E+E F KTLD+GLVLL+ V+ +L +I GD F+LYDT G P D+ I Sbjct: 358 LAQNVIKKEEESFLKTLDQGLVLLENVIKNLKAKKI-PGDKVFELYDTFGFPFDLTTLIA 416 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RGL ID F +A+ +Q+SR+R +L + W +KE +F+GYD L Sbjct: 417 NERGLE-IDKEGFEKAMGKQKSRSRGATL-----SKVGDWIVIKESKKE-EFVGYDTLES 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RK+ G ++ FD+TPFY E G Sbjct: 470 NILITRYRKMNTN---------------------------KDGDFYQLTFDKTPFYPEGG 502 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + + KK + +HH + + ++ + R S Sbjct: 503 GQVGDQGYLELENGEILNITDTKKENNLVIHHCKSLPKKMDISFKVF--VNPELRLNTSS 560 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHL+H AL +LG+HV Q GS + RFD +H + + +LK++E VN+ I + Sbjct: 561 NHTATHLVHQALRFVLGNHVQQKGSMVNSKMFRFDFSHFSKLKNEQLKNVEKFVNERILE 620 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +P+ R + + A+ GA AL G KY VR + S LCGGTHV +T + Sbjct: 621 KIPLEEQREIPHDKALEEGAIALFGEKYGKNVRTIRFG------KSIELCGGTHVKNTSD 674 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I+SES++ +G+RRIEA+TG +++ Q LK++ LK SQ V + + Sbjct: 675 IWYFKIISESAVASGVRRIEAVTGSAVKNYFENQTTILKNINQLLKQSQDPV-KAILNLQ 733 Query: 765 EEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 E L+ +K K + +L I+ VNF++ I +D++ +K + + K+ Sbjct: 734 SENIFLKKEISALSKLKSKTLKSELLKEIKIISGVNFLAKEIE-IDAQGMKDLSFEIGKE 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + II++ G K K + +++ L+ D +A + + + + GGG GG+ A + Sbjct: 793 F-NKIILVFGSRKTGKPLISCYISKQLVNEDGRDASQIIKYLGQYIDGGG-GGQSFYATA 850 Query: 878 GGPNGNKADQAIAGVASFL 896 GG + A+ L Sbjct: 851 GGKKIEGINLALDEAKKIL 869 >gi|262189584|ref|ZP_06047986.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93] gi|262034534|gb|EEY52872.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93] Length = 781 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 336/809 (41%), Positives = 470/809 (58%), Gaps = 69/809 (8%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151 MLGNFSFG YFKE AIQ AW+ LT L + RL +TVY+ D+EAF +W K G+ AD+I Sbjct: 1 MLGNFSFGDYFKEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRI 60 Query: 152 IRITTN--------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWN 202 IRI DNFW M +TGPCGPC+EIF+D GE I GG PGS E+G+R+IEIWN Sbjct: 61 IRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGEHIWGGPPGSPEEDGDRFIEIWN 120 Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262 VFMQF + LPK S+DTGMG+ER++ ++Q +NY+ID+F+ LI+A+ G Sbjct: 121 NVFMQFNRHADGTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIG- 179 Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322 Y+ + RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ + LG Sbjct: 180 -YQDLTNQSLRVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFF 238 Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382 L+ L MG+A EL + + L+E+ LR E+E FG+TLDRG+ +L+ L L ++L Sbjct: 239 HKLVGPLAEVMGTAGAELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQLS-GQVL 297 Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442 +G+ FKLYDT+G P D+ D+ RG + ID F QA+EEQR RAR G Sbjct: 298 DGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAREA------GQFG 350 Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502 + SL + T+F GY RG S+V+ + +G V Sbjct: 351 TDYNSLIKSATNTEFCGYTASRG-----------------------QSVVREMFVEGAEV 387 Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562 +G K +V D TPFYAE+GGQ GDTG D + D QK HH ++ + Sbjct: 388 STLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGN-AIAHHGVLAQ 446 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 G+L T + +D + R +S+NHSATHLLH AL +LG HV+Q GS + + LRFD + Sbjct: 447 GVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFS 506 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682 H + +T AE+K +E VN I N + T IMN ++A A GA AL G KY+D+VRV+S+ Sbjct: 507 HLEAMTPAEIKEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM- 565 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 G S+ LCGG H S+TG+I L I+SE I AGIRRIEA+TG+ A +L Q Sbjct: 566 ----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQA-- 619 Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFM 797 +V E+ + + L+ + K +L ++ + +IA VN + Sbjct: 620 ------------QHDAKVSEMAAKAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNVL 667 Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857 ++ D+K L+ ++D L+ ++ SGIIML ++ E K ++ VT DL ++ A +L Sbjct: 668 VAQLNGADNKALRGMVDDLKNQLSSGIIMLGNVA-EGKVGLIAGVTNDLTNKVKAGELVN 726 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + A + GG GGGRP MAQ+GG + + Sbjct: 727 MVALQV-GGKGGGRPDMAQAGGTDAHALP 754 >gi|254571161|ref|XP_002492690.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115] gi|238032488|emb|CAY70511.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115] Length = 981 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 309/971 (31%), Positives = 485/971 (49%), Gaps = 100/971 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R+TF +FF+ H +PSSS+IP +DPTL+FTN+GM +K IF G P Sbjct: 32 TANKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFAT 91 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + T QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI W+LLTK Sbjct: 92 LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKV 151 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L++ RLY++ + + D EA + WK + G++ D I+ + DNFW M + GPC Sbjct: 152 YGLEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPC 210 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN+VF+QF ++ LP IDTGMG Sbjct: 211 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGMG 269 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ +NYD D+F L +++TG++ + +RV+ DH+R Sbjct: 270 FERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHVR 329 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L PAL ++ +P Sbjct: 330 TLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETFP 389 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396 E+ + I E L E+ F +TLDRG L + +++ ++ L G ++LYDT+G Sbjct: 390 EVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 449 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL D F A E R ++ + G + L E ++ Sbjct: 450 PVDLTRLMAEETGLKIDD-EGFEIAKEASREASKGNGKTQGKELVKLDVHVLGELEKNSE 508 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513 T + + + AI E+++ E Q++ + Sbjct: 509 -----------------VPKTDDSYKYGTKNIEASIVAIYNGKELIQSTSEVADDQQLGI 551 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+TPFYAE GGQ+ DTG + DG+ + + G +H VE G+L ++ Sbjct: 552 LLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYAGYVLHTGYVEEGVLSVSDKIIA 611 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H K +T +EL+ Sbjct: 612 GYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSELQ 671 Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 +ED N++I +N+PV + +G A+ G Y D VRVVS+ Sbjct: 672 KVEDISNEVIKKNVPVFASDVTLAVGKEINGLRAVFGETYPDPVRVVSIGVPVEELVKNP 731 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQ 738 + S CGGTHV+ TG+I I+ ES I GIRRI A+T A + Sbjct: 732 SNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQRIAREK 791 Query: 739 DEKLKSLASF-----------------------------LKVSQGNVVGRVEEIWEEYRK 769 +++L ++A LK N+ V+ +E + Sbjct: 792 NDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVK---DELKV 848 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV- 828 Q +K+ L + + H+ + F++H+ ++K L ++K+I + L+ Sbjct: 849 RQKAESKKTLDTVKDYFNEHEDSPF-FVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLIV 907 Query: 829 GISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K + V+++ L A ++ ++++ + GG GG+ ++ Q G N ++ Sbjct: 908 GNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFI-GGKAGGKGNICQGVGTNPEGINK 966 Query: 888 AIAGVASFLKK 898 AI V LK+ Sbjct: 967 AIEAVTKILKE 977 >gi|146318890|ref|YP_001198602.1| alanyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|253751968|ref|YP_003025109.1| alanyl-tRNA synthetase [Streptococcus suis SC84] gi|253753793|ref|YP_003026934.1| alanyl-tRNA synthetase [Streptococcus suis P1/7] gi|253755331|ref|YP_003028471.1| alanyl-tRNA synthetase [Streptococcus suis BM407] gi|205830232|sp|A4VVR3|SYA_STRSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145689696|gb|ABP90202.1| Alanyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|251816257|emb|CAZ51885.1| alanyl-tRNA synthetase [Streptococcus suis SC84] gi|251817795|emb|CAZ55547.1| alanyl-tRNA synthetase [Streptococcus suis BM407] gi|251820039|emb|CAR46252.1| alanyl-tRNA synthetase [Streptococcus suis P1/7] gi|319758333|gb|ADV70275.1| alanyl-tRNA synthetase [Streptococcus suis JS14] Length = 872 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 315/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A + Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +T+ G + ++ L + ++G FKLYDT+G +++ +++ Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +DI F A++EQ+ RARA + GS + +L + F+ Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + IV E GQ +VFDQTPFYAE G Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + T + +KA H + + + L I+ + R+ + Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V +VE + Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ R LQ +A K + + + +++ + D+ L++ D ++ Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ + D +A +L ++ A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + + + VA L Sbjct: 855 GSDASAIQTLLNSVADNL 872 >gi|17506981|ref|NP_491281.1| Alanyl tRNA Synthetase family member (ars-2) [Caenorhabditis elegans] gi|74955985|sp|O01541|SYAC_CAEEL RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=AlaRS A; AltName: Full=Alanine--tRNA ligase gi|1938531|gb|AAB52339.1| Alanyl trna synthetase protein 2 [Caenorhabditis elegans] Length = 968 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 281/978 (28%), Positives = 453/978 (46%), Gaps = 99/978 (10%) Query: 1 MS--NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57 M S +R+TF+ FF +K H + SSS+IP +DPTL+F N+GM FK +F G P Sbjct: 1 MKHLTASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPN 60 Query: 58 Y-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112 + QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG YFK+ I AW+ Sbjct: 61 SDLAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWE 120 Query: 113 LLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164 LLT + + RLY++V+ DE EA +W+ G+ ++I+ DNFW M Sbjct: 121 LLTTVYGIPAERLYVSVFGGDEANGVPADSEARDIWRS-VGVPDERILNFGMKDNFWEMG 179 Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 + GPCGPCSEI +D+ + + +EIWNLVF+QF ++ LP I Sbjct: 180 DVGPCGPCSEIHYDRIGNRD-ASHLVNADDPMVVEIWNLVFIQFNREEGGVLKPLPAKHI 238 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275 D G+GLER+ V+Q+KT+NYD D+F+ + +A + +G++ + + +RV+ Sbjct: 239 DCGLGLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVV 298 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334 DH+R+ + ++DG P N GRGYVLRRI+RR + YA L L+P + + +G Sbjct: 299 ADHVRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYASEKLNAQPGFFASLVPVVISILG 358 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDT 393 +PEL + + + + + E+++F KTL RG VL + L + GDV+++LYDT Sbjct: 359 ETFPELSRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVQSLPEGTMTFPGDVSWRLYDT 418 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEK 451 +G P D+ Q + +GL+ +D +F +A + + A + + L++K Sbjct: 419 YGFPADLTQLMAEEKGLS-VDNTAFEEARRKAIETSSAGTGKFRDTLDLDVHALAELQQK 477 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 T + + AI + G+ V++ +G++ Sbjct: 478 GVPT--------TDDSPKYAYTFTGEGSDAVYKFEPCVGKILAIRRDGKFVDQLAAGEEG 529 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ+ D G + + G ++ G Sbjct: 530 AILLDRTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQVRGGYIVLVGSAEGSFSVGDQ 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + D ++ + NH+ TH+L++AL +L Q GS + PD +RFD T+ +T Sbjct: 590 VNERFDEDRKQLIMKNHTGTHVLNYALRKVLA-DSDQKGSLVAPDRMRFDFTNKAGMTVQ 648 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----- 684 ++K E+ +I V + +A G A+ Y D VRVV+V Sbjct: 649 QVKKAEEYAQQLIDTKGQVYAKNSPLGEAKKVKGLRAMFDETYPDPVRVVAVGTPVEQLL 708 Query: 685 ------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 +G + CGGTH+ + I + I SE +I GIRRI A+TG A + Sbjct: 709 QNPDAEEGQNTTVEFCGGTHLQNVSHIGRIVIASEEAIAKGIRRIVALTGPEAERAIARA 768 Query: 739 DEKLKSLASFLK--VSQGNVV----------GRVEEIWEE---------YRKLQLIHAKR 777 D L K + ++ +++EI +E + AK Sbjct: 769 DRLTARLEEESKHADKKDELLANKDKFKALQKKIQEIVDEANGAQLPYWRKDSIREKAKA 828 Query: 778 KLQ------LNVEDLSCHKI-ADVNFMSHIIS-----------EVDSKELKSVMDALQKK 819 + + K+ + ++ + +SK + + + L+ Sbjct: 829 IQKTLDGYTKAQQAAVAEKVLGEAKELAAVAEQPTVLVHVFAANANSKAIDNALKLLKDT 888 Query: 820 IQSGIIMLVGISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +M ++++ K L V + L+ + A + VL GG GGG+ AQ Sbjct: 889 ---KAVMAFSVNEDSGKVLCLAKVDKSLVSNGLKANEWVNEVCTVL-GGKGGGKDANAQL 944 Query: 878 GGPNGNKADQAIAGVASF 895 G N +K D A+ F Sbjct: 945 TGENVDKLDAAVELAQKF 962 >gi|74196486|dbj|BAE34378.1| unnamed protein product [Mus musculus] Length = 968 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYLGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ V+E V+GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772 Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL++ +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|262527561|sp|A4W221|SYA_STRS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 872 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 315/918 (34%), Positives = 491/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A + Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +T+ G + ++ L + ++G FKLYDT+G +++ +++ Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +DI F A++EQ+ RARA + GS + +L + F+ Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + IV E GQ +VFDQTPFYAE G Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + T + +KA H + + + L I+ + R+ + Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V +VE + Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ R LQ +A K + + + +++ + D+ L++ D ++ Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ + D +A +L ++ A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + + + VA+ L Sbjct: 855 GSDASAIQTLLNSVANNL 872 >gi|328353302|emb|CCA39700.1| alanyl-tRNA synthetase [Pichia pastoris CBS 7435] Length = 959 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 309/971 (31%), Positives = 485/971 (49%), Gaps = 100/971 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R+TF +FF+ H +PSSS+IP +DPTL+FTN+GM +K IF G P Sbjct: 10 TANKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFAT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + T QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI W+LLTK Sbjct: 70 LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKV 129 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L++ RLY++ + + D EA + WK + G++ D I+ + DNFW M + GPC Sbjct: 130 YGLEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN+VF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ +NYD D+F L +++TG++ + +RV+ DH+R Sbjct: 248 FERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L PAL ++ +P Sbjct: 308 TLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396 E+ + I E L E+ F +TLDRG L + +++ ++ L G ++LYDT+G Sbjct: 368 EVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL D F A E R ++ + G + L E ++ Sbjct: 428 PVDLTRLMAEETGLKIDD-EGFEIAKEASREASKGNGKTQGKELVKLDVHVLGELEKNSE 486 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513 T + + + AI E+++ E Q++ + Sbjct: 487 -----------------VPKTDDSYKYGTKNIEASIVAIYNGKELIQSTSEVADDQQLGI 529 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+TPFYAE GGQ+ DTG + DG+ + + G +H VE G+L ++ Sbjct: 530 LLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYAGYVLHTGYVEEGVLSVSDKIIA 589 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H K +T +EL+ Sbjct: 590 GYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSELQ 649 Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 +ED N++I +N+PV + +G A+ G Y D VRVVS+ Sbjct: 650 KVEDISNEVIKKNVPVFASDVTLAVGKEINGLRAVFGETYPDPVRVVSIGVPVEELVKNP 709 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQ 738 + S CGGTHV+ TG+I I+ ES I GIRRI A+T A + Sbjct: 710 SNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQRIAREK 769 Query: 739 DEKLKSLASF-----------------------------LKVSQGNVVGRVEEIWEEYRK 769 +++L ++A LK N+ V+ +E + Sbjct: 770 NDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVK---DELKV 826 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV- 828 Q +K+ L + + H+ + F++H+ ++K L ++K+I + L+ Sbjct: 827 RQKAESKKTLDTVKDYFNEHEDSPF-FVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLIV 885 Query: 829 GISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K + V+++ L A ++ ++++ + GG GG+ ++ Q G N ++ Sbjct: 886 GNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFI-GGKAGGKGNICQGVGTNPEGINK 944 Query: 888 AIAGVASFLKK 898 AI V LK+ Sbjct: 945 AIEAVTKILKE 955 >gi|104774413|ref|YP_619393.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423494|emb|CAI98396.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 866 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 319/906 (35%), Positives = 479/906 (52%), Gaps = 60/906 (6%) Query: 10 TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69 FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P + +T+ QK +R Sbjct: 1 MFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRITSSQKSIR 60 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127 ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT DLD+ +LY+ Sbjct: 61 T----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDLDKDKLYV 116 Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC----- 182 TVY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF+D+G+ Sbjct: 117 TVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVP 173 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 E RY+EIWN+VF +F P +IDTGMGLER+ ++LQ+ Sbjct: 174 EDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERVLSILQDAPT 233 Query: 243 NYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DLF +I A+E+++ KY + ++ ++I DH+R+ SF I DG LP N GRGY Sbjct: 234 NFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGALPGNTGRGY 293 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA R LG + L+P + M S YPE+ I + +++E++RFG Sbjct: 294 VLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKVVKNEEDRFG 353 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+ GL LLD ++ D+ ++G AFK++DT+G P ++ + +GL +D Sbjct: 354 ATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDKGLK-VDKDG 412 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ +E Q+ RAR L S ++ +L + + F Sbjct: 413 FDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF-------------------- 450 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + I+ ++V++A G+K ++FD+TPFYAE GGQ+ D G Sbjct: 451 ----EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGGQVADHGDIYDQ 505 Query: 538 GIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + A H + L + L ID R L +HSATHLLH A Sbjct: 506 EGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQTYKLKIDRARREGLRHSHSATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + + V T + Sbjct: 566 LRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWEAIQVKTTETDP 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E GA AL KY D+VRVV + S CGGTH +T +I + I+SE +I Sbjct: 626 ETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQIGVFKIISEQAI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEA+T + A +L G+ + L + + +K + ++ + EE R + +A Sbjct: 681 GAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQEELRSAEKQNA 740 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + Q+N + D+ ++ I +L+ + D + + +S +++L Sbjct: 741 AYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEGKSDVLILGAK 800 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S++K ++ + + L A DL + A + GGGG GGRP+MAQ+GG N AI Sbjct: 801 SEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGGKNPEGLQDAID 859 Query: 891 GVASFL 896 S L Sbjct: 860 AAVSQL 865 >gi|294507557|ref|YP_003571615.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8] gi|294343885|emb|CBH24663.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8] Length = 966 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 319/981 (32%), Positives = 483/981 (49%), Gaps = 123/981 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FFQ GHE++ S+SL+P D TL+FTN+GM FK++F G + Y Sbjct: 19 SSEEIRQDFLQFFQAKGHEVVSSASLVPEGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAV 78 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFK AI+ AW+LL + + L Sbjct: 79 DTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAP 138 Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 RLY TV++ D+ EA+ LW + L ++++ + +NFW M +TGPCGPCSE Sbjct: 139 DRLYATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSE 198 Query: 175 IFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 + D G + + + +E+WNLVF+Q+ Q L +DTGMG Sbjct: 199 LHVDLRPPEARQETPGRELVNIDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGF 258 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQAS------EQVTGMKYEGNNIV--------NHRVIV 276 ERM VLQ K + YD DLF L+QA E++ G RV+ Sbjct: 259 ERMVAVLQGKESTYDTDLFAPLLQAMADRSPREEIRGYDDLHIEDDDEHEQVRIALRVVA 318 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335 DH+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y L EP + L+ L +MG Sbjct: 319 DHIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGG 378 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL---------------------- 373 + L + + IE+ +RSE+E F +TL G+ + V+ Sbjct: 379 PFDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALR 438 Query: 374 --------------------------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + + L G +AF L+DT+G P+D+ + + Sbjct: 439 EDAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARE 498 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 R L +D+ + ++ Q+ RARA S + + W S+ A+ F+GYD Sbjct: 499 RDL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVS-PGEASVFVGYDR----- 551 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + V+A+ V E Q+ EV +TPFYAEAGGQ Sbjct: 552 -----------------AVVPDAEVRAV-----RVVETGDTQQYEVELSRTPFYAEAGGQ 589 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG +Q+ D Q++ E I V+ + + +D + R + +H Sbjct: 590 VGDTGTLRFGDESVQVLDTQREGERIAHT---VDTLPEPLDGPVEAAVDAERRNHIRTHH 646 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHL+H L LG HV Q GS + PD LRFD +H + L+ IE VN I QN+ Sbjct: 647 TATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQNI 706 Query: 648 PVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P R + ++A+ GA AL +Y DRVRV++ + S LCGGTHV +TGEI Sbjct: 707 PKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDP----DFSMELCGGTHVDATGEIG 762 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L +SE S+ +G+RR+EA+ G+ A H+ + E L + ++ + E+ EE Sbjct: 763 LFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQEE 822 Query: 767 YRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 +L + + + L + + + ++ + +L+ + + K+ Sbjct: 823 RDRLAGEVDQLRRGQLSDQLDTFIAENAASVDGITVVTGRLDRASMDDLQELGQQFRDKL 882 Query: 821 QSGII-MLVGISKEK-KASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 G + +L + ++ KA V+ V +DL+D A DL LGGGG GGRP +A Sbjct: 883 GQGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRLGGGG-GGRPSLAS 941 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG + D + GV + ++ Sbjct: 942 AGGRDPEALDTVLDGVPALVR 962 >gi|45656657|ref|YP_000743.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|48428508|sp|P61703|SYA_LEPIC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|45599893|gb|AAS69380.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 977 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 324/987 (32%), Positives = 480/987 (48%), Gaps = 110/987 (11%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y Sbjct: 4 KSVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D F D Sbjct: 64 TSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGNYFKEEAIEYALDCSVNHFGFD 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180 + ++++TVY +D+EA K+W G+ ++I R+ DNFW ++G CGPCSE++ D+G Sbjct: 120 KNKIWVTVYTDDDEAEKIWLSK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRG 178 Query: 181 ECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G G + +R++E WN+VF QF Q + L + IDTG GLER+A Sbjct: 179 IEKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------------------- 268 +LQE + YD + + +I E+++G+ YE Sbjct: 239 LLLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQ 298 Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325 RV+ DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L Sbjct: 299 DSRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKL 358 Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILN 383 + + + YPEL + I +T+ E+E F KTL+ GL ++ ++ I + Sbjct: 359 VDKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFS 418 Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443 G AF LY T+G P ++ ++I+ +GL D F + LE+ R +R Sbjct: 419 GADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTG 477 Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKE----DRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 + T+F+GY + G + K +D S+ Sbjct: 478 LNVD------KTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDS 531 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 + V GQ +V ++TPFY E GGQ+GD G ++ D QK+ + I Sbjct: 532 KQVSSLKEGQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSIIHF-GE 590 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 V G L ++ R +L +HS THLL+ AL T+LG HV Q GS ++P+ LRF Sbjct: 591 VLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEYLRF 650 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 D +H +TS E++ IE VN+ I +N PV T+ ++ EDA +GA A G KY +RVRVV Sbjct: 651 DFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERVRVV 710 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + G S CGGTHVS TGEI +I ESS AG RRIE + G + Sbjct: 711 QM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRF 765 Query: 740 EKLKSLASFLKVSQ------------------------------------------GNVV 757 +L L + N+ Sbjct: 766 SELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSENIA 825 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSV 812 ++EE + K++ A+R + N + + V +S I + D LK + Sbjct: 826 TKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSLKGL 885 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR 871 D L+ + ++ +++L + E AS++I + +L + +L + + ++L GG GGGR Sbjct: 886 SDNLKVREKNLLVILGSRNSEN-ASIVITCSSELTLKGIHCGNLIKTACELL-GGKGGGR 943 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ GG + AIAGV + K+ Sbjct: 944 PDMAQGGGKEKQNLESAIAGVINEAKQ 970 >gi|327349463|gb|EGE78320.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188] Length = 1088 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 302/965 (31%), Positives = 462/965 (47%), Gaps = 95/965 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 126 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 185 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +WDLLTK + L+ Sbjct: 186 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 245 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW G++ D ++ DNFW M E GPCGPCS Sbjct: 246 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 304 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP IDTGMG ER+ Sbjct: 305 EIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGYERL 363 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L ++TG + +RV+ DH+R+ +F Sbjct: 364 VSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRTLTF 423 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 424 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPEIRR 483 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG L + + L+G ++LYDT G P+D+ Sbjct: 484 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFPVDL 543 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL N EE R +A+ S G G T + + ++ + Sbjct: 544 TQLMAEERGLTID-----NAEFEEARLKAKEASKGQGKQTADVVKLTVHDLG-------- 590 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 + ++S +KAI + V+ G++ ++ D+ Sbjct: 591 ------LLETMNNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGIILDR 644 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 645 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 704 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L+ IE Sbjct: 705 LRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 764 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + + SG A+ G Y D VRVVSV Sbjct: 765 ISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 824 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HLMGQD 739 S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A + Sbjct: 825 WKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 884 Query: 740 EKLKSL---------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776 ++ + A L+V + V +V +++ E + Q + +K Sbjct: 885 QRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQKLESK 944 Query: 777 RKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834 + L + D + + + + K + ++ ++ K+ + + + K Sbjct: 945 KALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMHNKSVYVFAADKGAG 1004 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + L + A + ++ GG GG+ +A G K + AI Sbjct: 1005 KVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDAIKAAT 1063 Query: 894 SFLKK 898 +L+K Sbjct: 1064 EYLEK 1068 >gi|88658226|ref|YP_507768.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas] gi|123492839|sp|Q2GFL5|SYA_EHRCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88599683|gb|ABD45152.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas] Length = 887 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 380/918 (41%), Positives = 549/918 (59%), Gaps = 60/918 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N VS++R +F++FF KNGH++ PSS LI +DP+L+FTN+GMV FK +FT Sbjct: 2 MKNNLVSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANV 61 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE Sbjct: 62 NTATSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKEL 121 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L + RLY TVY +D+EAF LWKKISG+S +II+ITT+DNFWSM TGPCGPCSEIF+D Sbjct: 122 SLSKDRLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYD 181 Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + GGLP E+G R+ EIWNLVFMQ++++ E +LPK IDTGMGLER+A V+ Sbjct: 182 YGDNVKGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVM 241 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 Q +NYDI LFK LI AS++ +G N + HRVI DH+RS++FLIA+G+ P NEGR Sbjct: 242 QGVHDNYDISLFKALIAASKEQSGNS---TNELAHRVIADHVRSAAFLIAEGLTPGNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLR 352 Y+LRRI+RRA Y +L Y + LM + P L E M YPELI AK LI L+ Sbjct: 299 NYILRRIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILK 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E F TL R L LL+ L +L +IL+GD+ FKLYDT+G P+DI DI+ +G+ Sbjct: 359 IEEENFKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK- 417 Query: 413 IDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + +Q+ R++ + + E+ W +KE+ G+T+F+GY+ Sbjct: 418 FDEQGFYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKFVGYERYD------- 470 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V +IV G + VE A G KV ++ D TPFYAE+GGQ GD Sbjct: 471 ----------------TKATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGD 514 Query: 531 TGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 G + ++ D +K + +++H I+++G L + ID + R Sbjct: 515 VGIFNVIVRQEKELFANDNIAEVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERR 574 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 R L NHSATHLLH+ L + + S + Q GS ++ + LRFD ++ +T +L IED + Sbjct: 575 RNLCANHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMY 634 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699 +I+ N PV++ + + +DA+A GA AL KY + VRVVS++ S LC GTHV Sbjct: 635 SLISGNNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIKD------SKELCCGTHV 688 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 T EI IVSE+SI GIRRIEA+TG+ A + Q++ L S+A +KV NV+ + Sbjct: 689 KYTSEIGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQ 748 Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++++ ++ ++L+ + + N++ ++ KI +V+F+ +S + ++ ++ K Sbjct: 749 IDKLDKKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---K 805 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + I+L + ++ V L + AVD ++ ++ GGG +AQ Sbjct: 806 HLTADRIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMVKS-KGGGNAQLAQIN 864 Query: 879 GPNGNKADQAIAGVASFL 896 G + D ++ V S L Sbjct: 865 GEYVKEID-IMSNVKSKL 881 >gi|320581101|gb|EFW95323.1| Cytoplasmic alanyl-tRNA synthetase [Pichia angusta DL-1] Length = 954 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 299/967 (30%), Positives = 472/967 (48%), Gaps = 95/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R TFL++F+ GH + SSS+IP +DPTL+F N+GM +K IF G P Sbjct: 6 TATKVRNTFLDYFKDRGHTFVSSSSVIPHDDPTLLFANAGMNQYKPIFLGTVDPSSSFAS 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +WDLLT Sbjct: 66 LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTNV 125 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L++ RLY+T ++ D EA + WK G++ D I+ DNFW M + GPC Sbjct: 126 YGLNKDRLYVTYFEGDAANGLEPDLEAKQYWKD-VGVADDHILPGNAKDNFWEMGDQGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+QF ++ LP +DTGMG Sbjct: 185 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEIWNNVFIQFNREQDGSLKPLPAKHVDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ +NYD D+F+ L +++TG++ +RV+ DH+R Sbjct: 244 FERLVSVLQNVRSNYDTDVFQPLFSKIQEITGVRPYSGKFGKDDLDGIDTAYRVLADHVR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR Y R L P L ++ +P Sbjct: 304 TLTFALADGGVPNNEGRGYVLRRILRRGARYVRKYMNYPIGKFFSQLAPTLIEQVKDIFP 363 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396 E+ I E L E+ F +TLDRG L + +++ ++ L G ++LYDT+G Sbjct: 364 EVATNTDTIFEILDEEEASFARTLDRGEKLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 423 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID F +A ++A G + L Sbjct: 424 PVDLTRLMAEEAGL-NIDEEGFEKARLASLEASKAGGSKSGKTLLKLDVHIL-------- 474 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEV 513 + + + + I E++ E +GQ++ V Sbjct: 475 ---------GALDSNKDIPVTDDSYKYGNQDIKTKIVGIYNGKELLGSTEGTEAGQQLGV 525 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + ++TPFYAE GGQ DTG + DG+ + + G +H V G ++ Sbjct: 526 LLEKTPFYAEQGGQEYDTGKIVIDGVAEFEVENVQSYAGYVLHTGHVVEGKFSVGDQVIA 585 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL ILG V Q GS + + LRFD ++ +T +L+ Sbjct: 586 GYDELRRWPIRNNHTGTHILNLALREILGDGVDQKGSLVAAEKLRFDFSNKAAVTLEQLE 645 Query: 634 SIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 IE N II ++PV ++ + G A+ G Y D VRVVS+ Sbjct: 646 KIEAICNKIIKDSMPVYSKPVALNVAKSIYGLRAVFGETYPDPVRVVSIGVPVEELLAKP 705 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS-------- 733 ++ +S CGGTHV+ T +I L IV ES I GIRRI A+TG A Sbjct: 706 DNKEWYDYSVEFCGGTHVAKTSDIKELVIVEESGIAKGIRRIVAVTGTEAHEVQRIAKEF 765 Query: 734 -----------HLMGQDEKLKSLASFL---------KVSQGNVVGRVEE-IWEEYRKLQL 772 +++KLK ++ L K + ++++ + +E + Q Sbjct: 766 DEQLDAIEKMPFGEAKEKKLKETSTKLGQLSISVLQKAQLKDKFAKIDKAVKDEVKARQK 825 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K+ L E + H+ D F+ I ++K + ++ ++K+ + + L+ Sbjct: 826 ADTKKALDAVKEFFAEHE--DAPFLVKHIDISANAKIITETINMIKKENKEKSLFLITGQ 883 Query: 832 KEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K+ + + + ++++ L + A ++A ++A + GG GG+ ++ Q G + D+AI+ Sbjct: 884 KDDARVAQGVYISDEHLGKVQATEVANVAASYI-GGKAGGKGNVCQGMGTEAAQIDKAIS 942 Query: 891 GVASFLK 897 V L+ Sbjct: 943 AVEKLLE 949 >gi|256825088|ref|YP_003149048.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] gi|256688481|gb|ACV06283.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] Length = 893 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 301/885 (34%), Positives = 453/885 (51%), Gaps = 64/885 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L +F+ H ++PS+ LI +DP L+F N+GMVPFK GQ+ P +Q Sbjct: 1 METAEIRRRWLAYFEGKDHAVVPSAPLI-HDDPNLLFVNAGMVPFKPYLLGQQTPPWQRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR G D++ VG+T+RH TFF+M GNFSFG YFK AI +AW+ LT Sbjct: 60 TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKAGAISMAWEFLTTPEAGG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L + L+ TVY++D+EAF LW +++ L A++I+R DN+WSM GP GP SEIF Sbjct: 116 GLGLRKDDLWATVYNDDDEAFDLWLELTDLPAERIVRRDEEDNYWSMGVPGPGGPSSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 D+G G G + + +R++EIWNLVFMQ E + + LP+ +IDTGMGL Sbjct: 176 LDRGAEY-GRDGGPAVDEDRFMEIWNLVFMQHELSAVRSKSDFDIAGNLPQQNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ER+A+VLQ N Y+ID ++ + ++ G++Y + V+ RV+ DH+R Sbjct: 235 ERIASVLQGVDNLYEIDQVYPVLDRAAEMAGVEYGASSGHIASESHPHDVHLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S LI DG++P NEGRGYVLRR++RRA+ RLLG T+P + LLP MG +YPEL Sbjct: 295 SGLMLIGDGVVPGNEGRGYVLRRMLRRAVRSMRLLGVTDPALPELLPISRDLMGESYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398 + I + +E++ F +TL+ G + D ++ GD AF L+DT+G P+ Sbjct: 355 VSGWDRISQIAYAEEDAFRRTLEAGTTIFDVAAGQTKDAGQKVFPGDKAFALHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR RA+A + SG + GAT + Sbjct: 415 DLTLEMAAEQGL-AVDEAGFRGLMTEQRERAKADARAKKSGHANTEVWRELRSLGATDWR 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 Y L V +V+ GE V G+ +VV D T Sbjct: 474 AYTDLATD-----------------------GRVVGLVRDGERVGGLSQGETGQVVLDTT 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE+GGQ+ D G DG RL++ DVQ+ +G+ H V G + +D Sbjct: 511 SFYAESGGQVADAGIITLDGARLEVVDVQRPVKGLVAHTVKVASGEVTEGADARAEVDPT 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R + + HS TH++H AL +LG Q+GS P LR D + + +A +E+ Sbjct: 571 WRIEAAQAHSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWNGALDAATRSELEEV 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N + +LPV M+ A GA AL G Y++ VRV+ + GG S LCGGTH Sbjct: 631 ANLAVRDDLPVSAHWMSLPAAREWGALALFGETYDEDVRVIEI----GGPWSRELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V + +I L + ESS+ +G RR+EA G A HL + + L++ V + Sbjct: 687 VQHSSQIGALTLTGESSVGSGSRRLEAFVGLNALRHLATERALVAELSTIAGVQPTELKD 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVM 813 +V ++ ++ + K Q ++ + ++ + EVD +L++V Sbjct: 747 KVSQLVARLKETEREITAMKRQQAQGATAGLVDEAEQVGGIRLVTKELPEVDGGDLRTVA 806 Query: 814 DALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLA 856 ++ + + +S K V++ T+ D A L Sbjct: 807 QDVRGRFGDAAAAVALVSTAGAKPVVVVATTQAARDAGVKAGALV 851 >gi|15807291|ref|NP_296021.1| alanyl-tRNA synthetase [Deinococcus radiodurans R1] gi|20532268|sp|Q9RS27|SYA_DEIRA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|6460111|gb|AAF11848.1|AE002062_1 alanyl-tRNA synthetase [Deinococcus radiodurans R1] Length = 890 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 334/923 (36%), Positives = 491/923 (53%), Gaps = 72/923 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-------IFTGQEK 55 + IR +L FF+ GH LPS S I DPT +FT +GM PFK +F GQ Sbjct: 6 TTAEIRERYLYFFETKGHLRLPSHSTIAP-DPTTLFTVAGMQPFKENFMGAPAVFDGQ-- 62 Query: 56 PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + VTT QKCVR G D++NVGRT RH + FEM+GNFSFG YFK AI AW+ LT Sbjct: 63 -PSKRVTTAQKCVRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIHWAWEFLT 117 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGP 168 + +D+ ++Y+TVY +D+EAF W + GL A+ I R ++NFW GP Sbjct: 118 GPEWMGMDKDKMYVTVYKDDDEAFGYWTQDIGLPAEHIHRFDADENFWPANAPLEGPNGP 177 Query: 169 CGPCSEIFFDQGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILP 220 CGPCSEI++D+GE G + E R++E+WNLVF Q+++Q+ LP Sbjct: 178 CGPCSEIYYDRGENYGDDTWGDYYQTRESARFLEVWNLVFPQYDRQDLDASGQPVLKDLP 237 Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLR 280 +IDTGMGLER+A+V+Q+ + Y D+FK +++ +++G YEG V+HRV+ +H+R Sbjct: 238 FKNIDTGMGLERVASVVQDVPDFYSNDVFKPIVERVAELSGKPYEGETSVSHRVVAEHIR 297 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S S ++ADG +N GRGY R+IMRRA+ + +LG EP + L+ + MG AYPEL Sbjct: 298 SVSMIVADGTAFSNTGRGYTARKIMRRAIRHGYMLGLREPQLYRLVELVVDSMGGAYPEL 357 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + +E ++R+E+E+F KTL+ G+ L G+LS + K L G AF+LYDT+G P+D+ Sbjct: 358 QHNQSRVEASVRAEEEQFLKTLEGGIKRLGGLLSGMEKGSTLVGKDAFELYDTYGFPVDL 417 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++I G +D + ++LE + ARA S G + ATQF+GY Sbjct: 418 TKEIAEEYG-VSVDEAGYAESLEHAQEIARAGS-KYGKSELFGGHQEALDGLPATQFVGY 475 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D G V A++ GE + +G + VV QTPF Sbjct: 476 DQTSGD-----------------------GQVLALLSGGERLSHLPAGSEATVVLSQTPF 512 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 Y E GG++GDTG DG + D QK +G+F+H +VE+G L+ + + + Sbjct: 513 YGEGGGEVGDTGRLEWDGGAGIVRDTQKTKQGVFLHDVLVEQGELKEGTRVRGVVSPER- 571 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + +H+ATHLLH AL +LG V Q GS + D LRFD +H +++ E+ +E V+ Sbjct: 572 AAIQRHHTATHLLHAALRAVLGGGVQQKGSRVAADQLRFDFSHGAAMSAEEIAQVETLVS 631 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGG 696 ++ N PV R M +A A+GA AL G KY D VRVV VE + V S LCGG Sbjct: 632 RWVSANFPVSWREMPIAEAKAAGATALFGEKYGDVVRVVRVEGDVDFGGHAVSSMELCGG 691 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 HVS TG+I IVS+ ++ AG+RRIEA+ G++A + L G+ A+ L S + Sbjct: 692 AHVSRTGDIGAFVIVSDENVAAGVRRIEALAGEQATAWLRGRLNASAKAAALLNTSPEGL 751 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVED-------LSCHKIADVNFMSHIISEVDSKEL 809 RV + + + + A+ + QL ++ S +S ++ EL Sbjct: 752 EERVSGLQGQLKAAEKETAQARRQLAEAQMGGGGSAAQTRELGGFKVASLKLSGIEGNEL 811 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 + D L + + ++++ K V+ + + +A L A GG G G Sbjct: 812 RGAADKLLDQSGADLVVIAS----DKGLVVKATKDAVAKGAHAGQLVSKLAAAGGGKG-G 866 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 GRP MAQ+G + A A+ Sbjct: 867 GRPDMAQAGITDAAGALGALDTA 889 >gi|288918208|ref|ZP_06412563.1| alanyl-tRNA synthetase [Frankia sp. EUN1f] gi|288350378|gb|EFC84600.1| alanyl-tRNA synthetase [Frankia sp. EUN1f] Length = 880 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 326/915 (35%), Positives = 480/915 (52%), Gaps = 60/915 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + Sbjct: 1 MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFVGDLTAPWSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQKCVR D++NVGRT RH +FF+M GNFSFG YFK AI A++L+T+ + + Sbjct: 60 TSVQKCVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELVTEGYGFN 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+ TVY +D+EA +W+ + L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 116 PDDLWATVYLDDDEAESIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 173 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236 G G + +RY+EIWNLVFMQ+ + E LP +IDTGMGLERMAT+ Sbjct: 174 EY-GRDGGPEADEDRYLEIWNLVFMQYARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ A+ ++TG +Y + V RV+ DH R+++ LI+DG+ P+N Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGARYGADPAADVRLRVVADHTRTAAMLISDGVSPSN 292 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M LL + MG YPEL+ I +E Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMAELLAEVRQAMGPIYPELVDQAEAITAVAVAE 352 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL G L D ++ L+G+ AF+L+DT+G P+D+ D+ GL Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSAQLSGESAFRLHDTYGFPIDLTIDMAADAGLT- 411 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR A+A G + + + G T F GY L Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V IV G G++V +V D TPFYAE GGQ Sbjct: 464 ---------------TRESGVVGIVGIGDGSSRVAVGEGEEVGIVLDTTPFYAEGGGQEA 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G DG ++ DVQ+ + +H V RG LR + + +D + RR +S +H+A Sbjct: 509 DLGVIRFDGGECEVLDVQRPVADLVMHRVKVLRGELRVGADVAVEVDVERRRAVSRSHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H A LG +Q GS +P LRFD + + L +ED VN++ ++L V Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEVALRDLEV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + + +A GA AL G KY D+VRVV D G ++ LCGGTHVSS+ ++ + Sbjct: 629 RWYVTTQAEARRLGAMALFGEKYGDQVRVV-----DVGDYARELCGGTHVSSSAQLGAIK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++SESSI AG RR+EA+ G A L + + L++ LK + RV +I R Sbjct: 684 LLSESSISAGTRRVEALVGIDAFRFLAREHVLVSQLSTALKARPDELTDRVADIVGRLRD 743 Query: 770 LQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823 + + + + +V ++ + + +++ + ++ ++ Sbjct: 744 AERELERLRAQAVLAGAAALAAGAEAVGEVALVTAQVPAGTPADDVRLLALDIRGRLAGR 803 Query: 824 IIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++V E A V+ T+D A DL R S LGG G GG+P +AQ G + Sbjct: 804 PAVVVVTEAEGAAIVVA--TDDAARGRGLRAGDLIRQSWAALGGKG-GGKPDVAQGGRGD 860 Query: 882 GNKADQAIAGVASFL 896 + + A + + Sbjct: 861 ASMIPKVFARIRELV 875 >gi|223933644|ref|ZP_03625622.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591] gi|223897674|gb|EEF64057.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591] Length = 872 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 315/918 (34%), Positives = 489/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIDIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A + Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +T+ G + ++ L + ++G FKLYDT+G +++ +++ Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +DI F A++EQ+ RARA + GS + +L + F+ Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + IV E GQ +VFDQTPFYAE G Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + T + +KA H + + + L I+ + R+ + Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V +VE + Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ R LQ +A K + + +++ + D+ L++ D ++ Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ + D +A +L ++ A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + + + VA L Sbjct: 855 GSDSSAIQTLLNSVAENL 872 >gi|302023989|ref|ZP_07249200.1| alanyl-tRNA synthetase [Streptococcus suis 05HAS68] gi|330833035|ref|YP_004401860.1| alanyl-tRNA synthetase [Streptococcus suis ST3] gi|329307258|gb|AEB81674.1| alanyl-tRNA synthetase [Streptococcus suis ST3] Length = 872 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 315/918 (34%), Positives = 489/918 (53%), Gaps = 68/918 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A + Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +T+ G + ++ L + ++G FKLYDT+G +++ +++ Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +DI F A++EQ+ RARA + GS + +L + F+ Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + IV E GQ +VFDQTPFYAE G Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + T + +KA H + + + L I+ + R+ + Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V +VE + Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ R LQ +A K + + +++ + D+ L++ D ++ Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++LV +K ++ + D +A +L ++ A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + + + VA L Sbjct: 855 GSDSSAIQTLLNSVAENL 872 >gi|195577578|ref|XP_002078646.1| GD22412 [Drosophila simulans] gi|194190655|gb|EDX04231.1| GD22412 [Drosophila simulans] Length = 948 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 292/962 (30%), Positives = 447/962 (46%), Gaps = 83/962 (8%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56 M +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 1 MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ Sbjct: 61 EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT+ L + RLY+T + + D E ++W + GL + I+ + DNFW M E Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSE+ FD+ + + +EIWNLVF+Q+ +++ LPK ID Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276 GMG ER+ +V+Q K +NYD DLF L A + TG + +RV+ Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + + L ID+ + + + S G G+ E+I + Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G F + V ++ +S + A+ + + V E SGQK +V Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ D G + + G ++ H V G L+ L L Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 E +++ +N+P+ + G ++ Y D VR S+ Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVR-------PANKPPSSF 704 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 + +G IM I SE +I GIRRI A+TG A L + + + LK + Sbjct: 705 AAAPTLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEI-VRLKATI 763 Query: 754 GN---------VVGRVEEIWEE-----------------YRKLQLIHAKRKLQLNV---- 783 N V + E+ E+ + L+ ++ L Sbjct: 764 DNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAVSV 823 Query: 784 -----EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKE-KKA 836 C + + + ++ K L + + ++ ++ M + + + KK Sbjct: 824 TVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDADSKKI 883 Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 L V + +++ A + + + L GG GGG+P AQ+ G N K D+ + + F Sbjct: 884 FCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQLASKF 942 Query: 896 LK 897 + Sbjct: 943 AQ 944 >gi|262527560|sp|B1HUK4|SYA_LYSSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 908 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 326/933 (34%), Positives = 492/933 (52%), Gaps = 85/933 (9%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +LEFF++ GH PS+ L+P NDP+L++ NSG+ K F G+ P + Sbjct: 22 MKAVDIRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRI 81 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K Sbjct: 82 TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 137 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D L IT++ ED+EA+ +W + G+ +++IR+ NFW + E GP GP SEIF+D+ Sbjct: 138 FDPELLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 194 Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G E ERY+EIWNLVF QF LPK +IDTGMGLER+ + Sbjct: 195 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 254 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281 V+Q N+D DLF +I+ E+ KY+ + V+ +VI DH+R+ Sbjct: 255 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRT 314 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YPE+ Sbjct: 315 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 374 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399 + I+ +++E+ RF +TLD GL + + V + + G AF+LYDT+G P++ Sbjct: 375 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGADAFRLYDTYGFPIE 434 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D F A+EEQR RARA + S + L A++F+G Sbjct: 435 LTEEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 491 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 +D L ++ + A++ G++ + A GQ+ V+ +TP Sbjct: 492 FDTL-----------------------VANTEIAAMIVNGQVEKVASEGQEALVILAKTP 528 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQ+ D+G D + DVQK G +H IVE G + E ++ + + Sbjct: 529 FYAEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDD 588 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + NH+ATH++ AL +LG HV+Q GS + PD LRFD +H +T EL+ IE V Sbjct: 589 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 648 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ + ++ VV M + A A GA AL G KY D VRVVS+ G +S LCGG HV Sbjct: 649 NEKVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 703 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 + EI IVSE I AG RRIEA+TG+ A + ++ L A+ LK + ++V + Sbjct: 704 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTK 763 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIIS--EVDSKELKSVMD 814 V+ + +Y++LQ + ++ + + S D+ L+ +MD Sbjct: 764 VQALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHSSFYKSRSKDNNLLRQMMD 823 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN----------AVDLARLSAKVLG 864 L+ + +I+L + + ++ +T +++R+ L + Sbjct: 824 DLKALMPKAVIVLGAVDGDLSDAMCRGIT--IINRWQLPCWKYREIWCQKLVVVI----- 876 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GG RP MA +G + +K D+A+ V ++K Sbjct: 877 ---GGVRPDMAMAGAKDASKLDEALLSVYDYVK 906 >gi|81871231|sp|Q8CFX8|SYAC_MESAU RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|26522952|dbj|BAC44844.1| alanyl trna synthetase [Mesocricetus auratus] Length = 968 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 314/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FAIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDAKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGLLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAKG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ ++ VEE V+GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYHSDSSGAYVFECTVATVLALRREKMFVEEVVTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKEA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ VN +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIVNAMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + + Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLRR 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL+ + +K +V + ++ E +++K + + L+ ++DL Sbjct: 773 SLSIMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|330794423|ref|XP_003285278.1| alanyl-tRNA synthetase [Dictyostelium purpureum] gi|325084730|gb|EGC38151.1| alanyl-tRNA synthetase [Dictyostelium purpureum] Length = 944 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 298/969 (30%), Positives = 458/969 (47%), Gaps = 98/969 (10%) Query: 2 SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 +V+ IR TF+EFF H +PSS++IP +DPTL+F N+GM FK IF GQ P Sbjct: 1 MDVNQIRKTFIEFFVNKAEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT Sbjct: 61 AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAISWAWELLT 120 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + LD+ RLY+T + + D EA LW + L ++++ +NFW M + G Sbjct: 121 EVYGLDKERLYVTYFRGDPEKGLEPDNEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSEI +D+ G P + + IEIWNLVF+QF ++ + LP +DTG Sbjct: 179 PCGPCSEIHYDKVPGRNG-APFVNADDPTLIEIWNLVFIQFNREADKSLRPLPNKHVDTG 237 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVD 277 MGLER+ +++Q+ NYD D+FK + +A ++VTG + + +RVI D Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFKPIFEAIQEVTGYPEPYGGKVGAEDSQQVDMAYRVIAD 297 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ SF IADG P+ +GRG VLRRI+RRA+ Y + L L+ + G Sbjct: 298 HIRTLSFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVVQNFGEF 357 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 YPEL + I L E++ F KTL++G+ + ++ D +L+ A+ L G Sbjct: 358 YPELRKKPEHIRMVLTREEDMFNKTLEKGIQEFEKMIKKTT-DGVLSAPNAYFLSTVCGF 416 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + +GL +DI F + E Q R + T Sbjct: 417 PIDLTTIMAEEKGLK-VDIQGFEKLCEAQSEIDRKRQKEKKTELT--------------- 460 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 +G + ++K + + V + VKAI E V+ GQ +V + Sbjct: 461 -LG---AEANAWLKNNNIKITDDSFKYQQKEVQTTVKAIWNGKEFVDTVPKGQLCGIVLE 516 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGILRTEMSLV 572 T FY E GGQ+ D G + DV+ + + + E L+ + Sbjct: 517 STNFYPEQGGQIYDVGQLSFVDDQKTAFDVKDCKVFGGYVLHIGYLSYECTELKVGDKVE 576 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 T+DY R + NH++TH++++AL ++LG + Q GS + RFD + + +T EL Sbjct: 577 STVDYTRRSPIMSNHTSTHMVNYALKSVLGEGIEQRGSFVDASRFRFDFSFGRAVTKDEL 636 Query: 633 KSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVR-----------VVS 680 I+ VND+I + L V + + +G A+ G Y D VR + + Sbjct: 637 AKIDQIVNDLIFKQLNVYAQEVPLAKAKTINGLRAVFGEVYPDPVRVVSVGVPVDQLIEN 696 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + +S CGGTH+++T + L I+SE ++ AG+RRI A+TG A + E Sbjct: 697 PTNAEWANYSIEFCGGTHLTNTKQAELFTIISEETLGAGVRRIVAVTGSEATAAHELNKE 756 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYR-------------KLQLIHAKRKLQLNVEDLS 787 LK++ + + + E + + + L E + Sbjct: 757 LELRFNKALKLTGSELSKEIVALLETLKSSCISQAVRYNLVEAMKELQSIQRVLAKEVEN 816 Query: 788 CHKIADVNFMSHIISEVDSK----------------ELKSVMDALQKKIQSGIIMLVGIS 831 + II E+ SK + + +Q K +ML+ Sbjct: 817 LQILESSKITERIIQELTSKPSELYVDLVNLGSNTTVITDTIKKIQAKSNQTAVMLISPD 876 Query: 832 KE-KKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +E K + + +V +D + A +VL GG GGG+ +AQ G +K D+A Sbjct: 877 EEKGKVTCIGIVPKDSPISKSVAANVWVSKVTEVL-GGKGGGKAEVAQGVGSKLDKIDEA 935 Query: 889 IAGVASFLK 897 I F K Sbjct: 936 ILVARDFAK 944 >gi|302681375|ref|XP_003030369.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8] gi|300104060|gb|EFI95466.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8] Length = 949 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 299/964 (31%), Positives = 451/964 (46%), Gaps = 93/964 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 + +R F ++FQ GH + SS +P +DPTL+F N+GM FK +F G P Sbjct: 8 SSRQVRQDFFDYFQSKGHTFVRSSPTVPYDDPTLLFANAGMNQFKPLFLGTVDPHSDLSK 67 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLT+ Sbjct: 68 LKRAYNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 127 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY++ ++ D EA + W G+ D I+ DNFW M TGPC Sbjct: 128 YKLPKDRLYVSYFEGDPKNGLEPDLEAKQYWLD-IGVPEDHILPGNAKDNFWEMGATGPC 186 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+QF +++ LP +DTGMG Sbjct: 187 GPCSEIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQFNREDDGSLKPLPSKHVDTGMG 245 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLR 280 ER+ +V+Q+K +NYD D+F + Q +++TG+ + +RV+ DH+R Sbjct: 246 FERLVSVVQDKRSNYDTDVFSPIFQRVQELTGVRPYQGLFGPDDKDGIDTAYRVVADHVR 305 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYP 338 + +F ++DG +P N GRGYVLRRI+RR YAR LG T L+P + MG +P Sbjct: 306 TLTFALSDGGVPNNVGRGYVLRRILRRGARYARKKLGVTIGSFFSSLMPVVVEHMGDVFP 365 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396 E+ + I+E L E+E F +TLDRG L D + + LNG ++LYDT+G Sbjct: 366 EITKKLPEIKEILDEEEESFARTLDRGEKLFDQYAKRAKEQNLKELNGKDVWRLYDTYGF 425 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + GL GI+ F A + ++A + + + Sbjct: 426 PVDLTTLMAEELGL-GINEKEFEDAQAWSKEASKATQNKDAATVVKLDVHDIA------- 477 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513 K +++ VK I ++ + Sbjct: 478 ----------ALEKGGDVAKTDDSSKYNQGNITATVKKIFHNKAFLDSTSDIPEATSFGI 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE+GGQ DTG + DG+ + G +H ++ G L +V Sbjct: 528 ILDRTNFYAESGGQENDTGGIVIDGVAEFEVTDVQVYNGYVLHVGHLKYGDLEVGNEVVA 587 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 + D R L NH+ATH+L++ L +LG H+ Q GS + P LRFD +H I EL Sbjct: 588 SYDELRRWPLRNNHTATHILNYCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQIPLPELT 647 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS-----------V 681 IE D I +N+ V + M+ + A G A+ G Y D VRVVS + Sbjct: 648 QIESMSVDWIKKNVKVYGKDMDLKSAQKIPGLRAVFGETYPDPVRVVSLEFSVDEISADI 707 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 E S CGGTHV+ TG+I I ES I GIRRI A+TG A D Sbjct: 708 ENPKWRSTSIEFCGGTHVAKTGDIKHFVITEESGIAKGIRRIVAVTGHEAAEATRLADAL 767 Query: 742 LKSLASFLKVSQGNVVGRVE-----------------EIWEEY----RKLQLIHAKRKLQ 780 L K++ ++ ++ + + +R+ Sbjct: 768 QIKLDQIEKMTGKEADAAIKAFTVTLNQADTSIIRKSQLKDRLASVRKAFDKQVKEREAA 827 Query: 781 LNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 LN + L F+S + + ++K L++V+ +K + + L E Sbjct: 828 LNKDALDQFRTFFEQTPGAPAFVSILHVDGNAKLLQNVVAQARKAGK--AVYLFSPDPEG 885 Query: 835 -KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K + + V L ++ +A A VL GG GG+ AQ G N ++ D A+ Sbjct: 886 TKVAHVNFVPPALREKGLDAKTWAAKVTDVL-GGKAGGKEDSAQGVGTNVDRVDDALKAA 944 Query: 893 ASFL 896 ++ Sbjct: 945 GQYV 948 >gi|152966976|ref|YP_001362760.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216] gi|205830072|sp|A6WCF7|SYA_KINRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151361493|gb|ABS04496.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216] Length = 893 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 320/921 (34%), Positives = 490/921 (53%), Gaps = 62/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L+FF++ H ++PS+SL+ +DP+LMFT +GMVPF T Q Y+ Sbjct: 1 MQTAEIRRRWLDFFERKEHTVVPSASLV-SSDPSLMFTVAGMVPFIPYLTAQVPAPYKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D+D VG+T RH TFF+M GNFSFG YFK A+ AW+LLT Sbjct: 60 TSVQKCLRTL----DIDEVGKTTRHGTFFQMNGNFSFGDYFKREAVAFAWELLTTPEADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D RL+ TVY +D+EAF+LW++ G+ A++I R DN+W+ + GP GPCSEI+ Sbjct: 116 GLGFDPERLWTTVYLDDDEAFQLWRE-VGMPAERIQRRGKADNYWNTGQPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 FD+G G G + +RYIEIWNLVFMQ++ + + LP +IDTGMGL Sbjct: 175 FDRGPAY-GAEGGPEADEDRYIEIWNLVFMQYQLSAVRTKVDFDVEGELPAKNIDTGMGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A + Q N Y+ID + ++ + +++G +Y + V RV+ DH+RS+ LI D Sbjct: 234 ERVAFLKQGVDNMYEIDEVRPVLDKAAELSGRRYGAVHEDDVRMRVVADHVRSALMLIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEG GYVLRR++RRA+ RLLG EP + HLLPA M ++YP+L I Sbjct: 294 GVTPGNEGAGYVLRRLVRRAVRAMRLLGVEEPALPHLLPASMEVMSASYPQLRSDFERIS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E++ F +TL G + + ++ L+G+ AF L+DT+G P+D+ ++ Sbjct: 354 AVAYAEEDAFRRTLVSGTAIFETAVAQTKAAGGSSLSGERAFALHDTYGFPIDLTLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGYDLLR 464 G G+D F + EQ RA+A + +G + I+ S E+ F GY+ Sbjct: 414 EAG-VGVDEPGFRALMAEQVGRAKADAKAKKTGGVDLAIYRSTLEQLPAPVVFTGYE--- 469 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + ++Q G A +G VEVV D+TPFYAE Sbjct: 470 --------------------AAAGEARISVVLQGGVSTPSAPAGTDVEVVLDRTPFYAEG 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G L ++DVQ+ G++VH V G L ++ +D RR + Sbjct: 510 GGQLADHGTVTTTSGAVLAVSDVQQPVRGLYVHKGTVTSGELVAGDAVHAVVDAGRRRSI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 S H+ATHL+H + LG +Q GS P +RFD + + ++ IE VN+ I Sbjct: 570 SRAHTATHLVHQVVREHLGDTATQAGSQNAPGRMRFDYRSTAQVAGDVVRDIEAVVNERI 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L V +M+RE A+ SGA AL G KY ++VRVVS+ S LCGGTH ++ Sbjct: 630 HDDLEVSAAVMDRESALNSGAMALFGEKYGEKVRVVSIGE----DWSKELCGGTHTLTSQ 685 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ L+ IVSESSI +G RRIEA+ G A L + + L +K + R+ + Sbjct: 686 QVGLVSIVSESSIGSGARRIEALVGADAFDFLTREHLLVNQLTEVVKARPEELPDRIGAL 745 Query: 764 WEEYRKLQLIHAKRKLQLNVE---DLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQK 818 + A+ + + ++ + V ++H V + +L++++ ++ Sbjct: 746 LTRLGDAEKEIARLRGGQVLALAPTIAAKPVDKFGVRVVTHDAGPVSADDLRTLVLDVRS 805 Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ ++ + G++K++ V+ E A +L R +AK LGGGG GG+ +A Sbjct: 806 RLGEERPSVVAVAGVAKDRPVVVVATNAEARRWGVKAGELVRTAAKTLGGGG-GGKDDLA 864 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG + +K A+ G+ F+ Sbjct: 865 QGGGQDPSKVPAALQGIEDFV 885 >gi|240278873|gb|EER42379.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H143] Length = 961 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 304/965 (31%), Positives = 465/965 (48%), Gaps = 95/965 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG ER+ Sbjct: 196 EIHYDRIGA-RNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L + ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG L + + L+G ++LYDT G P+D+ Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RGL N EE R +++ S G G T + + ++ + Sbjct: 435 TRLMAEERGLTID-----NAEFEEARLKSKEASKGQGKRTADVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517 D ++S +KAI + V+ G++ ++ D+ Sbjct: 482 ------LLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H ++ ++L+ IE Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + + SG A+ G Y D VRVVSV Sbjct: 656 ISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A L Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775 Query: 736 MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776 ++ K + A L+V + V + +++ E + Q + +K Sbjct: 776 RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 835 Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834 + L + + + + K L ++ ++ K+Q + + KE Sbjct: 836 KALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKEAG 895 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + L + D A + ++ GG GG+ ++ G K D+AI Sbjct: 896 KVVHGCHVAQSLSEQGATPNDWANAVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 954 Query: 894 SFLKK 898 +L+K Sbjct: 955 EYLEK 959 >gi|326904170|gb|EGE51103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis W-148] Length = 903 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 321/935 (34%), Positives = 476/935 (50%), Gaps = 79/935 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y Sbjct: 1 MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF---SFGGYFKERAIQLAWDLLTKE- 117 T++QKC+R D+D VG T RH+TFF + G YFK AI+LAW LLT Sbjct: 60 TSIQKCIRT----PDIDEVGITTRHNTFF----RWPAIQLGDYFKRGAIELAWALLTNSL 111 Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LD R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP S Sbjct: 112 AAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSS 171 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTG 227 EI++D+G E RY+E+WNLVFMQ E+ + LP+ +IDTG Sbjct: 172 EIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTG 230 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSF 284 MG+ER+A VLQ+ N Y+ DL + +I +V Y + V +R+I DH R+++ Sbjct: 231 MGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAI 290 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ Sbjct: 291 LIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADF 350 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 I +E+ F +TL G L + V S +L+G AF L+DT+G P+++ Sbjct: 351 ERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTL 410 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++ GL +D I F + + EQR RA+A + + + GAT+F G+D Sbjct: 411 EMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDE 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVV 514 LR + + I G+ V A GQ+VE+V Sbjct: 470 LRS-----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELV 506 Query: 515 FDQTPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 D+TP YAE+GGQ+ D G G + R +TDVQK A+ ++VH VE G + Sbjct: 507 LDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDT 566 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ++ +D RR + HS TH++H AL +LG + Q GS P LRFD P+T Sbjct: 567 VIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDD 626 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 + +E+ N+ + + V T + A A GA AL G Y D VRVV + GG S Sbjct: 627 QRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFS 682 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGGTHVS+T +I + I+ ESSI +G+RR+EA G + HL + + LAS LK Sbjct: 683 LELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLK 742 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EV 804 V V RV + E R + + ++ +I +V ++ +S + Sbjct: 743 VPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGM 802 Query: 805 DSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAK 861 + +L+S++ ++ K+ S ++ L+ + + + D A DL + A Sbjct: 803 TAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAV 862 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + G GGG+ +AQ G N D A+ V S + Sbjct: 863 AVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 896 >gi|108808831|ref|YP_652747.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua] gi|122382877|sp|Q1C420|SYA_YERPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108780744|gb|ABG14802.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua] Length = 738 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 340/744 (45%), Positives = 461/744 (61%), Gaps = 52/744 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SS+L+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++ Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD LS L + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S + SL A+QF GYD ++ Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +TD QK H I+ G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683 Query: 712 SESS---IRAGIRRIEAITGQRAR 732 +ES I R AI G A Sbjct: 684 TESGSNLPGCTILRNLAIAGFSAF 707 >gi|269126369|ref|YP_003299739.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183] gi|268311327|gb|ACY97701.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183] Length = 889 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 321/932 (34%), Positives = 488/932 (52%), Gaps = 83/932 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + FL FF++ GH ++PS+SL+ DPTL+ +GMVPFK F GQ P + Sbjct: 1 MESAEVARRFLAFFEERGHTVVPSASLVAE-DPTLLLVPAGMVPFKPYFLGQRTPPAPRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+ QKCVR D+D VG+T RH TFF+MLGNFS G YFKE AI AW+LLT+ Sbjct: 60 TSAQKCVRT----PDIDEVGKTTRHATFFQMLGNFSIGDYFKEGAIPYAWELLTRPVSDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +L++TVY +D+EA +W + G+ ++I R DN+W M GP GPCSEI+ Sbjct: 116 GFGFPEDKLWVTVYLDDDEAADIWHRKVGIPVERIQRRGLADNYWHMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + +RY+E+WNLVFMQ + + + LP +IDTGMGL Sbjct: 176 YDRGPAY-GREGGPIADEDRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ERMA +LQ N Y+ D + ++ + ++TG +Y + V+ RV+ DH+R+ + L+AD Sbjct: 235 ERMAAILQGVDNIYETDTLRRILDKAAELTGTRYGRDRRADVSLRVVADHVRAGTMLVAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKLLI 347 G++PANEGRGYVLRR++RRA+ RLLG + LM L MG Y ELI I Sbjct: 295 GVIPANEGRGYVLRRLLRRAIRNLRLLGGQDAGLMHELTAVAIAAMGEQYTELISTAANI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E+ERF +TL G + D ++ + ++L+G AF L+DT+G P+D+ ++ Sbjct: 355 HAVIDAEEERFLQTLRTGTAIFDAAVAETKRAGKQVLSGSQAFTLHDTYGFPIDLTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEK-YGATQFIGYDLL 463 +GL+ +D F + LEEQR RA+A + +G + + L ++ G F+GY + Sbjct: 415 AEQGLS-VDEEGFRRLLEEQRQRAKADAAAKKTGNLDVSVLGELLDRAGGKVDFLGYHDV 473 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G + V ++ G V A +G +VEVV D+TPFYAE Sbjct: 474 TG-----------------------EARVVGLLVNGASVPAAGAGTEVEVVLDRTPFYAE 510 Query: 524 AGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQL D G G G +++ DVQ G+ VH V G + + ID + RR Sbjct: 511 GGGQLADQGRIRTGGGAEIEVHDVQSPLPGLIVHRGKVRAGEAQAGDTAFAEIDVERRRA 570 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 +S +H+ATH++H LG +Q GS +P RFD T + P+ + L+ +ED VN + Sbjct: 571 ISRSHTATHMVHAGFRRALGESAAQAGSENSPGRFRFDFTSAGPVPPSVLRDVEDEVNAV 630 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + +L V + E A A GA AL G KY D VRVV V G +S LCGGTHV+ + Sbjct: 631 LVDDLDVRAFTTSIEQARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVARS 685 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G++ L+ ++ ESSI AG+RRIEA+ G A L + + L+ LKV + + R+ Sbjct: 686 GQLGLIKVLGESSIGAGVRRIEALVGIDAFRFLARESVLVSQLSEQLKVRKEELPERIST 745 Query: 763 IWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDAL 816 + R+ + + + + S I + +++H + +L+ + + Sbjct: 746 VIGRLREAEKELERLRSAQVLAVAGSLADSAKDIDGIAYVAHRAPDGTTADDLRKLALDV 805 Query: 817 QKKIQS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR----------LSAKVLG 864 + ++ S ++L+ + + V++ VTE +R A L L Sbjct: 806 RGRLASRPAVVLITGVPKDRPVVVVAVTEGARERGLKAGALVGVAAKALGGGGGGKDDLA 865 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 Q GG + D+A+A V + Sbjct: 866 -----------QGGGADPTAIDKALAAVEHAV 886 >gi|325090131|gb|EGC43441.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H88] Length = 961 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 304/965 (31%), Positives = 465/965 (48%), Gaps = 95/965 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG ER+ Sbjct: 196 EIHYDRIGA-RNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L + ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG L + + L+G ++LYDT G P+D+ Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RGL N EE R +++ S G G T + + ++ + Sbjct: 435 TRLMAEERGLTID-----NAEFEEARLKSKEASKGQGKRTADVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517 D ++S +KAI + V+ G++ ++ D+ Sbjct: 482 ------LLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H ++ ++L+ IE Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + + SG A+ G Y D VRVVSV Sbjct: 656 ISTDYIRQNCVVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A L Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775 Query: 736 MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776 ++ K + A L+V + V + +++ E + Q + +K Sbjct: 776 RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 835 Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834 + L + + + + K L ++ ++ K+Q + + KE Sbjct: 836 KALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKEAG 895 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + L + D A + ++ GG GG+ ++ G K D+AI Sbjct: 896 KVVHGCHVAQSLSEQGATPNDWANAVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 954 Query: 894 SFLKK 898 +L+K Sbjct: 955 EYLEK 959 >gi|158298580|ref|XP_318757.4| AGAP009701-PA [Anopheles gambiae str. PEST] gi|157013952|gb|EAA14564.4| AGAP009701-PA [Anopheles gambiae str. PEST] Length = 946 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 290/965 (30%), Positives = 454/965 (47%), Gaps = 106/965 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 S IR+ FL+FF++ H + SSS+IP +DPTL+F N+GM FK IF G P Sbjct: 6 TASQIRSIFLDFFKEKEHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPNSDMAK 65 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT+ Sbjct: 66 WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTER 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L + RLY+T + + D E ++W K+ G+ + I+ + DNFW M ETGPC Sbjct: 126 LKLPKERLYVTYFGGHPESGLEPDLECREIWLKL-GVKEEHILPGSMKDNFWEMGETGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ FD+ + + +EIWNLVF+Q+ ++ +LPK ID GMG Sbjct: 185 GPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREQDSSLKLLPKKHIDCGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 ER+ +V+Q+K +NYD D+F L A ++ G + +RV+ DH R Sbjct: 244 FERLVSVIQDKRSNYDTDVFMPLFDAIQKGTGAAAYQGRVGADDSDGVDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G +PE Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVQLLGETFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G P+D Sbjct: 364 VRKDPQHIKNVINEEEQQFLKTLTRGRNLLNRTIAKLGNSKVIPGDVAWRLYDTYGFPID 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQF 457 + + + + ID+ + +A E ++ + + L+E+ Sbjct: 424 LTLLMAEEKQMT-IDMEGYEKAKHESYIISQGKEKSKTATIDLDVHGISELQERKVP--- 479 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 F + + + + A+ VEE +GQ+ V+ D+ Sbjct: 480 -----ATDDSFKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDR 534 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ D G + +V G +V H V G LR + +D Sbjct: 535 TNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMD 594 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R+ NHSATH L+H+L +LG Q GS + P+ LRFD T+ +T ++ E Sbjct: 595 VVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAMTIEQVAEAE 654 Query: 637 DNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 +++ +N+ V + N G ++ Y D VRV+S E Sbjct: 655 RLTREVVKRNVQVYAKEANLAVAKTIRGLRSVFDEVYPDPVRVISFGVPVEQLEADPTGE 714 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G ++S CGGTH+ +G ++ I +E +I GIRRI A+TG A L + + Sbjct: 715 AGVINSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEALKALKKTELLEQE 774 Query: 745 LASFLKVSQG---------NVVGRVEEIWEE-----------------YRKLQLIHAKRK 778 L+ L+ + V ++ E+ ++ + L+ ++ Sbjct: 775 LSK-LRATIDGDKEGREAKEHVKKIIELTDDVSQATIPYVKKDELRTVLKGLKKALDDKE 833 Query: 779 --LQLNVEDLSCHKI-------ADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLV 828 + V K D F+ + +++ K L S + ++K + + Sbjct: 834 RVARAAVASGVVEKAKELSQAHKDAPFLVQRLEALNNTKALDSALKEVRKVNPEQSALFL 893 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 A + A V+ GG GGG+P AQ+ G N +KAD+ Sbjct: 894 S-------------------GLKANEWISHIAPVM-GGKGGGKPESAQASGGNFDKADEI 933 Query: 889 IAGVA 893 + Sbjct: 934 LELAR 938 >gi|164660846|ref|XP_001731546.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966] gi|159105446|gb|EDP44332.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966] Length = 963 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 309/967 (31%), Positives = 464/967 (47%), Gaps = 98/967 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 + +R+TFL+FF++ H +PSSS +P +DPTL+F N+GM +K+IF G P Sbjct: 14 AAKVRSTFLDFFREKEHTFVPSSSTVPYDDPTLLFANAGMNQYKSIFLGTVDPSSEFSKL 73 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW LLT+ + Sbjct: 74 RRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISFAWKLLTEVY 133 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L RLY+T ++ D E ++W+K G+ ++I++ DNFW M TGPCG Sbjct: 134 GLPSDRLYVTYFEGDPKQGLEPDVETLEIWRK-VGVPDERILKGNAKDNFWEMGATGPCG 192 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI FD+ + + IE+WN VF+QF ++ LP IDTGMG Sbjct: 193 PCSEIHFDRV-GGRNAASLVNMDDPDVIEVWNNVFIQFNREEDGSLRPLPARHIDTGMGF 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281 ER+ ++LQ+K +NYD D+F L +++TG + +RV+ DH+R+ Sbjct: 252 ERLVSILQDKRSNYDTDVFMPLFSRIQELTGARPYSGKLGAEDVDGLDTAYRVVADHIRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339 +F I+DG +P +GRGYVLRRI+RR + R L+P L +MGS +PE Sbjct: 312 LTFAISDGCIPDKDGRGYVLRRILRRGTRFVRKYFQVPIGAFFSQLVPTLVEQMGSFFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLP 397 + + ++ L E++ F +TLDRG L + + L+G ++LYDT+G P Sbjct: 372 ITRKTKELQAILNEEEQSFARTLDRGEKLFEQYANAARTEGRTKLSGADVWRLYDTYGFP 431 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + +GL D F +A E + ++ + + L Sbjct: 432 VDLTSIMAEEQGLT-FDQAEFEKAQAESKEASKGQGKQQEALAVKLDVHDL--------- 481 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE----AVSGQKVEV 513 + T + + VKAI Q+ + V + A +G+ + Sbjct: 482 --------GHLDADASVPQTNDVFKYDTPSMQAHVKAIFQEHKFVSDSNSLAKAGEPFGI 533 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + DQT YAE+GGQ DTG + DG + + G +H ++ G L +V+ Sbjct: 534 LLDQTNMYAESGGQQADTGSLVIDGKAEFEVSDVQASNGYVLHIGFLKYGKLSVGDQVVV 593 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 + D RR L NH+ TH+L+ L ILG HV Q GS + P LRFD +H P+ +EL+ Sbjct: 594 SYDESRRRPLQNNHTGTHILNFGLREILGDHVDQKGSLVAPSKLRFDFSHKAPVNVSELQ 653 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV-----------SV 681 IED N I +++ V + M E+A G A+ G Y + VRVV + Sbjct: 654 KIEDISNSFIERDVSVYAKDMVLEEAYKIPGLRAVFGESYPNPVRVVALEFDIDQMAKDL 713 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------SHL 735 S CGGTHV TGEI L + ES I GIRRI A+TG A Sbjct: 714 TNPRWRQTSIEFCGGTHVKKTGEIGRLVVTEESGIAKGIRRIVAVTGDEAVAVTATADEA 773 Query: 736 MGQDEKLKSLA------SFLKVSQGNVVG------RVEEIWEEYRKLQLIHAKRKLQLNV 783 + +++ ++ + LK + R +E+ + K++ R Sbjct: 774 SKRLDEIDQVSDDVAKEAQLKAFSVELARMDISVVRKDELKARFTKIRKALDTRLKARAA 833 Query: 784 EDLSCHKIA---------DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 D+ + A D + +SK L+S + A+ +K+ + + S Sbjct: 834 ADVKVAQEAVQTYFNENPDARVYIAQLDTGANSKALQSGV-AVARKLNKSVYLFARESGS 892 Query: 834 KKASVLIV--VTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG--GPNGNKADQA 888 +K L V +D L +AV + ++ L G GGG+P AQ G + D+A Sbjct: 893 EKTKTLYGNFVPKDELERGLDAVSWNKAVSEKL-QGRGGGKPDGAQGQGEGTKAD-VDEA 950 Query: 889 IAGVASF 895 I SF Sbjct: 951 IKLAQSF 957 >gi|109148542|ref|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapiens] gi|115502460|sp|P49588|SYAC_HUMAN RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; AltName: Full=Renal carcinoma antigen NY-REN-42 gi|15079238|gb|AAH11451.1| Alanyl-tRNA synthetase [Homo sapiens] gi|119572224|gb|EAW51839.1| alanyl-tRNA synthetase, isoform CRA_b [Homo sapiens] gi|123981462|gb|ABM82560.1| alanyl-tRNA synthetase [synthetic construct] gi|123996297|gb|ABM85750.1| alanyl-tRNA synthetase [synthetic construct] Length = 968 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 314/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + V A+ ++ VEE +GQ+ VV D+T Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I V T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 L+ + +K +V + ++ E +++K +L + L+ ++DL Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|170781160|ref|YP_001709492.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] gi|205830026|sp|B0REK2|SYA_CLAMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169155728|emb|CAQ00849.1| alanine tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] Length = 885 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 304/928 (32%), Positives = 471/928 (50%), Gaps = 78/928 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L +F GH ++PS+SL+ +DPTL+FT +GMVPF TG + Sbjct: 1 MQTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFARA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VGRT RH TFF+M GNFSFG YFKE+AI AW+LLT Sbjct: 60 TSVQKCIRTL----DIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L++TVY ED+EA + WK+I+GL ++I + + N+W + GP GPCSEIF Sbjct: 116 GLGFSPDDLWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 FD+G G G + + +RY+EIWNLVFMQ+ + + P +IDTGMGL Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPTRNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A + Q N Y+ D + ++ + +++G +Y + + V R++ DH+RSS L++D Sbjct: 235 ERVAFIKQGVENMYETDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSVMLMSD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGY+LRR+MRR + RL+G L PA M +AYPE+ I Sbjct: 295 GVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+E F +TL G +LD + + E + GD AF L+DT G P+D+ ++ Sbjct: 355 RLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMAE 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D +F++ + EQR+RA+A + + + +S G T+F GYD L Sbjct: 415 ENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELETG 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + ++ G V+ AV+G EV+ +T YAE+GG Sbjct: 474 -----------------------TTILGLIVGGHSVDHAVAGDIAEVILPETSLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q D G +G G L++ DVQK +G+ H V G + + +D RR + Sbjct: 511 QEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTIVDADWRRGATQA 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS THL+H AL +LG Q+GS +R D ++ ++ A IED N + + Sbjct: 571 HSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSPATRSEIEDIANGAVRDD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L VVTR+M ++A GA AL G KY D VRVV + GG S LC GTHVSS+ +I Sbjct: 631 LQVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ +V ESS+ + RRIE++ G+ A L + + L S LK + + R+ ++ + Sbjct: 687 LINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSSLKTPREQLPDRIADLLQN 746 Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820 + + A + Q + ++ V + + V + E++ ++ ++++ Sbjct: 747 LKTAERRIADFEAQALQQRVPTLLAQGSRVGSVTLIQESLGSVRSADEVRQLVTLVRERA 806 Query: 821 QSG-IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL----------ARLSAKVLGGGGG 868 S +++ + K +V++ + D A L L Sbjct: 807 GSDPVVVALAGDAGGKPTVIVATNQAARDAGAKAGQLARAAAAVLGGGGGGKDDLA---- 862 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 Q GG + + +A+A V L Sbjct: 863 -------QGGGSDVSAIGEALAAVRQAL 883 >gi|50310341|ref|XP_455190.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644326|emb|CAG97897.1| KLLA0F02431p [Kluyveromyces lactis] Length = 956 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 302/965 (31%), Positives = 473/965 (49%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R+TFL++F+ GH +PSS +IP +DPTL+F N+GM +K IF G P Sbjct: 10 TAANVRSTFLDYFKSKGHTFVPSSPVIPFDDPTLLFANAGMNQYKPIFLGTVDPSSDFYK 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + T QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK Sbjct: 70 LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + RLY+T ++ DE EA LWK G+ D I+ DNFW M E GPC Sbjct: 130 YGIPGDRLYVTYFEGDEKLGLEPDFEARDLWKS-VGVKDDHILPGNAKDNFWEMGEQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ +D+ +++ +EIWN VF+QF ++ + LP +DTGMG Sbjct: 189 GPCSEVHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQFNREQDRSLRALPAKHVDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280 ER+ +VL + +NYD D+F+ L +++TG++ +RV+ DH+R Sbjct: 248 FERLVSVLHDVRSNYDTDVFEPLFNRIQEITGVRSYTGKFGAEDTDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L L ++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSQLSVTLIEQVKDMFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGL 396 E+ + + E L E+ F KTLDRG L + D+ L+G ++LYDT+G Sbjct: 368 EVARDPSYLFEILDEEEASFAKTLDRGEKLFEKYAEDALKKADKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID I F +A +E ++ G G ++ I ++ E Sbjct: 428 PVDLTELMAEEQGLK-IDTIGFEKAKQESYEASK---KGGKKGASDLIRLNVHEL----- 478 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + D T V + + I + V+ G++ V+ Sbjct: 479 ----------SQLNGDNVAKTDDSSKYGTENVEATILRIYDGEKFVDSMTEIGKQYGVIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + DG D + G H + G L S++ + Sbjct: 529 DKTCFYAEQGGQEFDTGKLVIDGEAEFNVDNVQAYNGYVFHTGSLGDGKLSIGDSIIASY 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 + R L NH+ TH+L+ AL +LG+ V Q GS + P+ LRFD +H + ++ EL + Sbjct: 589 EELRRHPLRNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKRALSYEELVEV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E N+ I NL + S A+ G Y D VRVVS+ Sbjct: 649 EKLSNEKIRDNLTVYYKEVALDLAKTISSVRAVFGETYPDPVRVVSIGKAVEEVLENPTS 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737 E+ +S CGGTHV+ T +I IV ES I GIRRI A++G A Sbjct: 709 EEWQKYSIEFCGGTHVAKTSDIKEFVIVEESGIAKGIRRIVAVSGPEAYEVQRIATEFDG 768 Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 + +KLK L L +++ ++ + +I +E + AK++ Sbjct: 769 ELTAVEKLPFSPLKAQKLKELGVRLGQLTISVITKTDLKDKFNKIEKEVKDELKSRAKKE 828 Query: 779 LQLNVEDLS--CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK-EK 834 ++ ++D+ + +F I ++K + ++ ++ + I L ++ + Sbjct: 829 IKQTLDDVKHHFDANKESSFYVKHIDIPTNAKAITEAINHIKTNSKDKSIYLFTCNEPDG 888 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + +++ + + LA+ + + GG GG+ ++ Q G N D A+A V Sbjct: 889 KVAHGCYISDAAIAQGVDGSSLAKTVSSSI-GGKAGGKGNVFQGMGDKPNGIDSAVAEVE 947 Query: 894 SFLKK 898 + LK+ Sbjct: 948 ALLKE 952 >gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] Length = 1025 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 308/961 (32%), Positives = 453/961 (47%), Gaps = 89/961 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 +R TF+ FF+ H SS ++P NDPTL+F N+GM FK IF G P Sbjct: 83 AKKVRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 142 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI AW+LLTK + Sbjct: 143 SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIGWAWELLTKIY 202 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L R+Y T + DE EA W + L ++++ DNFW M +TGPCG Sbjct: 203 KLPADRIYATYFGGDEKAGLAPDAEARDFWLQF--LPPERVLPFGCKDNFWEMGDTGPCG 260 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PC+EI +D+ + + IEIWNLVF+QF +++ LP +DTGMG Sbjct: 261 PCTEIHYDRVGNRDASQ-LVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 319 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRS 281 ER+ +VLQ K +NYD D+F + A +Q T G + +RV+ DH+R+ Sbjct: 320 ERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVDMAYRVVADHIRT 379 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 SF IADG P NEGR YVLRRI+RRA+ Y L E L+ + MG +PEL Sbjct: 380 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNIVVKVMGDVFPEL 439 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 IQ ++ I E ++ E+ FGKTL +G+ + ++ AF L+DT+G PLD+ Sbjct: 440 IQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQ-GKVSCLQDAFVLWDTYGFPLDL 498 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL +D+ FN A++E R R+R G + AT Sbjct: 499 TQLMAEERGLW-VDVEGFNNAMDEARERSRNAQNKQAGG-------DIIMDADAT----- 545 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 S K+ V S++KAI E + S +V +V + T F Sbjct: 546 -----SALHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSNEVGIVLESTSF 600 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQN 579 YAE GGQ+ DTG G Q+++VQ + ++ ++ +DY Sbjct: 601 YAEQGGQIFDTGSLEGTFGSFQVSNVQIFGGFVVHIGSLTRAAPRLSVGDKVICKVDYDR 660 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KP+ A L+ IE V Sbjct: 661 RTLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPALLRKIESIV 720 Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687 N+ I L V + +A +G A+ G Y D VRVV++ ++ Sbjct: 721 NEQIKAELEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWS 780 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-----GQDE-- 740 S+ LCGGTH+S+T E ++SE I G+RRI A+T A + Q+ Sbjct: 781 SISAELCGGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAMELASLLEQEADE 840 Query: 741 -------KLKSLASFLKVSQG----------NVVGRVEEIWEEYRKLQLIHA----KRKL 779 L+ + LK ++ ++ + +E RK Q + ++ + Sbjct: 841 ISKTEGSLLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQKKISEENMQKAV 900 Query: 780 QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 ++ E F + +D+ ++ + + +K ++ K V Sbjct: 901 KIATEMAEVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMVFSIDETTNKVVV 960 Query: 839 LIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 V E D + + + K L G G G+ +A G G D A+ A F Sbjct: 961 CAGVAEKGDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGVHLDAAMNLAAEFA 1020 Query: 897 K 897 + Sbjct: 1021 Q 1021 >gi|148272984|ref|YP_001222545.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|205830025|sp|A5CRZ5|SYA_CLAM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|147830914|emb|CAN01858.1| alaS [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 885 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 305/928 (32%), Positives = 472/928 (50%), Gaps = 78/928 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L +F GH ++PS+SL+ +DPTL+FT +GMVPF TG + Sbjct: 1 MQTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R D++ VGRT RH TFF+M GNFSFG YFKE+AI AW+LLT Sbjct: 60 TSVQKCIRTL----DIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L++TVY ED+EA + WK+I+GL ++I + + N+W + GP GPCSEIF Sbjct: 116 GLGFSPDDLWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 FD+G G G + + +RY+EIWNLVFMQ+ + + PK +IDTGMGL Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPKKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A + Q N Y+ID + ++ + +++G +Y + + V R++ DH+RSS L++D Sbjct: 235 ERVAFLKQGVENMYEIDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSLMLMSD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGY+LRR+MRR + RL+G L PA M +AYPE+ I Sbjct: 295 GVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRIS 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+E F +TL G +LD + + E + GD AF L+DT G P+D+ ++ Sbjct: 355 RLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMAE 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D +F++ + EQR+RA+A + + + +S G T+F GYD L Sbjct: 415 ENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELETG 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + ++ G V+ AV+G EV+ +T YAE+GG Sbjct: 474 -----------------------TTILGLIVGGRSVDHAVAGDIAEVILPETSLYAESGG 510 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q D G +G G L++ DVQK +G+ H V G + + +D RR + Sbjct: 511 QEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTVVDADWRRGATQA 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS THL+H AL +LG Q+GS +R D ++ ++S IED N + + Sbjct: 571 HSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSSETRSEIEDIANGAVRDD 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L VVTR+M ++A GA AL G KY D VRVV + GG S LC GTHVSS+ +I Sbjct: 631 LRVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQIG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ +V ESS+ + RRIE++ G+ A L + + L S LK + + R+ ++ + Sbjct: 687 LINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSTLKTPREQLPDRIADLMQN 746 Query: 767 YRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820 + + A + Q + + ++ V + + V + E++ ++ ++++ Sbjct: 747 LKTAERRIADFEAQALQQRVPALLAQGSRVGAVTLIQESLGAVRSADEVRQLVTLVRERA 806 Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL----------ARLSAKVLGGGGG 868 S +++ + K +V++ + D A L L Sbjct: 807 GSEPVVVALAGDAGGKPTVIVATNQAARDAGAKAGQLARAAAAVLGGGGGGKDDLA---- 862 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 Q GG + + A+ V L Sbjct: 863 -------QGGGSDVSAIGDALTAVRQAL 883 >gi|239917773|ref|YP_002957331.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|281413733|ref|ZP_06245475.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|239838980|gb|ACS30777.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665] Length = 903 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 318/929 (34%), Positives = 477/929 (51%), Gaps = 75/929 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I + FF+ GH ++PS+SL+ DP+L+FT +GMVPF F G++ P V Sbjct: 1 MKSQEIARRWTAFFESRGHRVVPSASLVSP-DPSLLFTVAGMVPFIPYFLGEQTPPSPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT Sbjct: 60 VSVQKCIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++TVY ED+EA ++W++ G+ ++I R+ +DN+W+ + GP GPCSEIF Sbjct: 116 GFGLDPERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + + RYIEIWNLVFMQ+ + + L +IDTG+GL Sbjct: 176 YDRGPAY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELEHKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + ++ + Q+ G Y ++ V R++ DH+RS Sbjct: 235 ERLAMILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI+DG+ P NEGRGYVLRR++RR + RL+G TEP+ LLP M YP + Sbjct: 295 ALMLISDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVA 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400 I +E++ F +T+ G LD + + G AF+L+DT+G P+++ Sbjct: 355 DEFERISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIEL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 +I G +D F + EQR RARA + SG T+ + G T F GY Sbjct: 415 TLEIAEEAG-VAVDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY 473 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + S+V+ ++Q GE V A +G ++E+V D TPF Sbjct: 474 TE-----------------------HTTESVVRGLLQNGEEVPSAGAGTELELVLDATPF 510 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ DTG GDG RL++ DVQ +G+ VH V G + + ID Q R Sbjct: 511 YAESGGQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 HS THL+H AL ILG +Q+GS LRFD ++ +++ +ED VN Sbjct: 571 LDGEKAHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAEALSAGARSEVEDVVN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I + V+T+ M+ E+A A GA +L G KY DRVRVV + G S LCGGTHV Sbjct: 631 IAIRDDHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEI----DGAWSRELCGGTHVG 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 T +I L ++ E S+ +G RR+EA+ G + HL + + L+ K + R+ Sbjct: 687 RTAQIGSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA----------DVNFMSHIISEVDSKELK 810 + + + A+ + Q V ++H +V +L+ Sbjct: 747 GATLDRLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSGGTSVRVLAHHAGDVAGDQLR 806 Query: 811 SVMDALQKKIQSG--------IIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAK 861 S+ L+ +I+S +++ + + + V++ E A + + + Sbjct: 807 SLALDLRARIESAGGNAAGTPVLVALTAEAKGRPLVVVATNEAARAAGLKAGAMVKTATG 866 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 VLGGGG GG+ +AQ GG + + A+ Sbjct: 867 VLGGGG-GGKDDVAQGGGQDVTRVGDALD 894 >gi|62897207|dbj|BAD96544.1| alanyl-tRNA synthetase variant [Homo sapiens] Length = 968 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 314/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + V A+ ++ VEE +GQ+ VV D+T Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I V T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 L+ + +K +V + ++ E +++K +L + L+ ++DL Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGATAKALNEALKLFKMHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|91084029|ref|XP_966465.1| PREDICTED: similar to alanyl-tRNA synthetase [Tribolium castaneum] gi|270006700|gb|EFA03148.1| hypothetical protein TcasGA2_TC013061 [Tribolium castaneum] Length = 965 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 305/969 (31%), Positives = 478/969 (49%), Gaps = 84/969 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 + +R ++ FF++ H+ + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 5 MSAKDVRNAYINFFKEKNHDYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTVDPNSDLA 64 Query: 59 --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LTK Sbjct: 65 KLTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTK 124 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 L RLY+T + + D E ++W + G+ ++ + DNFW M ETGP Sbjct: 125 RLHLPGDRLYVTYFGGDKAAGLEPDNECKQIWLGL-GVPESHVLPGSMKDNFWEMGETGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ FD+ +++ +EIWNLVF+Q+ +++ LPK ID G+ Sbjct: 184 CGPCSELHFDRI-GGRDVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKFLPKKHIDCGL 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ +++Q K +NYD DLF L A ++ TG G + +RV+ DH Sbjct: 243 GLERLVSIMQNKRSNYDTDLFLPLFDAIQKGTGAPPYGGKIGDADKDGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RRA+ YA L L+ + +G +P Sbjct: 303 RTITIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFSTLVNTVVEILGDTFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I +T+ E+E+F KTL RG LL+ ++ LG + L GDVA++LYDT+G P+ Sbjct: 363 EVCKDPQSIIDTINEEEEQFLKTLSRGRNLLNRTITKLGDSKTLPGDVAWRLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + +GL +D+ + + + A+ S G GSG + I + + T+ Sbjct: 423 DLTQLMAEEKGL-NVDMAVYEE----SKKLAQIASQGKGSGVEDTINLDV---HAITELQ 474 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + K + S V A+ + VE+ +GQ+ ++ D+T Sbjct: 475 NLGVPPTDDAPKYNYIAGSGINEEYKFELCHSTVIALRHNKQFVEQVHTGQECGILLDKT 534 Query: 519 PFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ DTG + G ++ + + G +V H G L+ + L +D Sbjct: 535 NFYAEQGGQIYDTGYIVKIGDESVEFSVKNVQVRGGYVIHIGSLEGTLKKGDKVALHVDS 594 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR + NH+ TH+L++AL +LG+ Q GS + PD LRFD T+ +T ++K+ E Sbjct: 595 ARRRLIMNNHTGTHVLNYALRKVLGTEADQRGSLVAPDRLRFDFTNKGAMTVDQVKNTEL 654 Query: 638 NVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 N ++I++N V + N G A+ Y D VR+VS+ Sbjct: 655 NSKELISRNDQVFAKESNLAVAKTIRGLRAVFEETYPDPVRIVSIGIPVEKLEVDPFGPA 714 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKL 742 G S CGGTH+ +G I I SE +I GIRRI A+TG A L + L Sbjct: 715 GDNTSIEFCGGTHLKYSGHIGDFVIASEEAIAKGIRRIVALTGPEATKALKRTEYLENCL 774 Query: 743 KSLASFLKV-----SQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLS-C 788 + ++ +V ++ ++ EE ++K ++ +A + L+ N++D Sbjct: 775 NDIKFLVETDKNGEKSKELVKKIVQLTEEVSHAVIPYWKKEEIRNALKTLKKNLDDKERA 834 Query: 789 HKIADVNFMSHIISEV------------------DSKELKSVMDALQKKIQSGIIMLVGI 830 K A N + I E ++K L + + ++ S + V + Sbjct: 835 AKAAVANQVVDQIKEFVKANPNLPILVKELKAFSNTKALDTALKQVRSLSPSTSALFVTV 894 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K L V+++ +D+ A + + A LGG G GG+ AQ+ G N ++ Sbjct: 895 DPDSNKMFCLASVSKEGVDKGLKANEWVQAVASKLGGKG-GGKADSAQASGSNSVAVEEI 953 Query: 889 IAGVASFLK 897 + F + Sbjct: 954 LQLAKQFAE 962 >gi|293192679|ref|ZP_06609633.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309] gi|292820186|gb|EFF79183.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309] Length = 902 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 310/935 (33%), Positives = 482/935 (51%), Gaps = 74/935 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IRT +L++F+K GHE+ PS SL+ P+++FT +GMVPF TG E + Sbjct: 1 MRTSEIRTRWLDYFEKQGHEIRPSVSLVSPE-PSILFTIAGMVPFIPYITGVEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 ASVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R ++T++D+D+EAF + K G+ I+R+ +NFW + GP GPC+E Sbjct: 116 KYGLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWH 175 Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228 +D+G G+RY+E+WNLVF Q+ + + P K +IDTG Sbjct: 176 YDRGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMR-GEGSGKDYPLLGELDKKAIDTGA 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVD 277 GLER+A V+Q+K N Y+ID +I+A+ Q++G +Y ++ V RV+ D Sbjct: 235 GLERLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVAD 294 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337 H+RSS LI DG+ P N+GRGYVLRR++RRA+ RLLG E M LL A M ++Y Sbjct: 295 HVRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASY 354 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTH 394 PEL I E +E++ F +TL G +LD ++ +++G AF L+DT+ Sbjct: 355 PELEINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTY 414 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--Y 452 G P+D+ ++ +G +D F + EQ+ RARA + +G T+ F EK Sbjct: 415 GFPIDLTLEMAAEQG-VSVDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMG 473 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 G + F+GY + V+A++ G A + +VE Sbjct: 474 GGSTFLGYTE-----------------------QAAEATVEALLVDGVAAPAASAPAEVE 510 Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V+ D+TPFYAE GGQL D G + G +++ DVQ G+ VH + G + Sbjct: 511 VILDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKA 570 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 ID + R ++ H+ATH+++ L ++ ++Q GS +P LRFD H + ++ Sbjct: 571 YAEIDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQ 630 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691 L IE VN+ +A++L V T +M+ + A +GA AL G KY VRVV++ Sbjct: 631 LSDIEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTIGD----GFDR 686 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 LCGGTHV +TG I + ++SE S+ +G+RRI+A+ G A + + L+ + Sbjct: 687 ELCGGTHVPTTGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGG 746 Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVD- 805 + R+E + + R+ + K + + S I V ++ + E+ Sbjct: 747 RADELPERIESLLAKLRESEKELEKVRTAQALSQGADLAASAKAIGPVTVVASAVGEMPS 806 Query: 806 SKELKSVMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV 862 + L+++ ++ ++ + ++ +G K S+++ E + A L R K Sbjct: 807 ADALRTLALDVRDRLGNDRGTVVALGGVVGGKPSLVVATNEAAREASVKAGALVRAVGKH 866 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +GGGG GGR +AQ GG AI + ++ Sbjct: 867 MGGGG-GGRDDIAQGGGTKPEGLADAIDAIRKEIE 900 >gi|304383973|ref|ZP_07366429.1| alanine--tRNA ligase [Prevotella marshii DSM 16973] gi|304334865|gb|EFM01139.1| alanine--tRNA ligase [Prevotella marshii DSM 16973] Length = 875 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 320/919 (34%), Positives = 498/919 (54%), Gaps = 75/919 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++ +FF++ GH ++PS+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 4 MTANEIRDSYKKFFEEKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTGNPEPRRR 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L LD Sbjct: 64 ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDYAWEYLVDVLQLD 123 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D EA W+K L AD II+ +DNFW M +TGPCGPCS Sbjct: 124 PKDLYVTVFEGSPEEQLEYDSEAASYWEK--HLPADHIIKGNKHDNFWEMGDTGPCGPCS 181 Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D Q + G +++ + IEIWN+VFMQ+ ++ L IDTGMG Sbjct: 182 EIHLDSRTPQEKAEISGAALVNKDNPQVIEIWNIVFMQYVRKANGALEPLSMKVIDTGMG 241 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 ER+ LQ K +NYD D+F+ +I+ +++G+ Y E V RV+ DHLR+ +F IA Sbjct: 242 FERLVRALQGKNSNYDTDIFQPIIREITKLSGITYGAEEQTDVAMRVVADHLRAVAFSIA 301 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP N GYV+RRI+RRA+ YA LG E + LLP L EMG AYPEL + L Sbjct: 302 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFLHRLLPVLIKEMGDAYPELPAQREL 361 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 I ++ E++ F +TL++G+ LL + + ++L+G AF+L+DT+G PLD+ + I Sbjct: 362 IGRVMKEEEDSFLRTLEKGINLLTAEIERMQTEGRKVLDGVQAFRLFDTYGFPLDLTELI 421 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G + +D FN +++Q+ RAR + W +L++ G QF+GYD Sbjct: 422 CREHGYS-VDEAQFNAEMQKQKDRARNA-----AQVENSDWVALRQ--GEQQFVGYDYTE 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + RKV +K E+V D TPFY E Sbjct: 474 HECHILRYRKVTQKKNTY----------------------------FELVLDYTPFYGEM 505 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GDTG + + +++ D +++ V E + + +D + R + Sbjct: 506 GGQVGDTGVLVSEDETVEVIDTKRENNQSIHI---VSALPKNLEANFMACVDTEKRAASA 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLL + L +LG HV Q GS ++ D LRFD +H + +T EL+ +E VN +I Sbjct: 563 ANHTATHLLDYVLKQVLGEHVEQKGSYVSADTLRFDFSHFQKVTDDELRQVERMVNAMIR 622 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 Q++P+ R E+A GA +L G KY D+VRVV S CGG H +STG Sbjct: 623 QDIPLDEHRDTPIEEAKQMGAISLFGEKYGDKVRVVRFGP------SCEFCGGIHAASTG 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I + IVSESS+ AGIRRIEA+TG+ ++ L+ + + + ++ +E+ Sbjct: 677 RIGMFKIVSESSVAAGIRRIEALTGKLCEEMFYSVEDTLRDIKALFN-NAKDLRTVLEKY 735 Query: 764 WEEYRKLQLIHAKRKLQLN--VEDLSCHKIA---DVNFMSHIISEVDSKELKSVMDALQK 818 +E+ ++ + + Q ++ + + + + ++ ++++ K ++ +++ Sbjct: 736 MDEHDNMRREIEQFQAQAVERMKSMLIERAVERRGIKVVKAVLP-IEAQVAKDLVFKIRE 794 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 I ++ +VG + +K + I++++D++ + NA + R +AK++GGGG GG+PH A Sbjct: 795 AIPQHLLCVVGSTAHEKPLLSIMLSDDMVKEQQLNAGQMVREAAKLIGGGG-GGQPHYAS 853 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + AI V Sbjct: 854 AGGKNLDGINAAIDKVIEL 872 >gi|68171547|ref|ZP_00544925.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str. Sapulpa] gi|67999031|gb|EAM85704.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str. Sapulpa] Length = 887 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 379/918 (41%), Positives = 548/918 (59%), Gaps = 60/918 (6%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N VS++R +F++FF KNGH++ PSS LI +DP+L+FTN+GMV FK +FT Sbjct: 2 MKNNLVSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANV 61 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE Sbjct: 62 NTATSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKEL 121 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L + RLY TVY +D+EAF LWKKISG+S +II+ITT+DNFWSM TGPCGPCSEIF+D Sbjct: 122 SLSKDRLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYD 181 Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + GGLP E+G R+ EIWNLVFMQ++++ E +LPK IDTGMGLER+A V+ Sbjct: 182 YGDNVKGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVM 241 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 Q +NYDI LFK LI AS++ +G N + HRVI DH+RS++FLIA+G+ P NEGR Sbjct: 242 QGVHDNYDISLFKALIAASKEQSGNS---TNELAHRVIADHVRSAAFLIAEGLTPGNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLR 352 Y+LRRI+RRA Y +L Y + LM + P L E M YPELI AK LI L+ Sbjct: 299 NYILRRIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILK 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E F TL R L LL+ L +L +IL+GD+ FKLYDT+G P+DI DI+ +G+ Sbjct: 359 IEEENFKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK- 417 Query: 413 IDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + +Q+ R++ + + E+ W +KE+ G+T+ +GY+ Sbjct: 418 FDEQGFYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKSVGYERYD------- 470 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V +IV G + VE A G KV ++ D TPFYAE+GGQ GD Sbjct: 471 ----------------TKATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGD 514 Query: 531 TGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 G + ++ D +K + +++H I+++G L + ID + R Sbjct: 515 VGIFNVIVRQEKELFANDNIAEVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERR 574 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 R L NHSATHLLH+ L + + S + Q GS ++ + LRFD ++ +T +L IED + Sbjct: 575 RNLCANHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMY 634 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699 +I+ N PV++ + + +DA+A GA AL KY + VRVVS++ S LC GTHV Sbjct: 635 SLISGNNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIKD------SKELCCGTHV 688 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 T EI IVSE+SI GIRRIEA+TG+ A + Q++ L S+A +KV NV+ + Sbjct: 689 KYTSEIGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQ 748 Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++++ ++ ++L+ + + N++ ++ KI +V+F+ +S + ++ ++ K Sbjct: 749 IDKLDKKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---K 805 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + I+L + ++ V L + AVD ++ ++ GGG +AQ Sbjct: 806 HLTADRIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMVKS-KGGGNAQLAQIN 864 Query: 879 GPNGNKADQAIAGVASFL 896 G + D ++ V S L Sbjct: 865 GEYVKEID-IMSNVKSKL 881 >gi|197099554|ref|NP_001125391.1| alanyl-tRNA synthetase, cytoplasmic [Pongo abelii] gi|75042108|sp|Q5RC02|SYAC_PONAB RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|55727911|emb|CAH90708.1| hypothetical protein [Pongo abelii] Length = 968 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 316/973 (32%), Positives = 476/973 (48%), Gaps = 96/973 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASKIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 PSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKEDRKVLC----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + LR D + + V A+ ++ VEE +GQ+ VV Sbjct: 471 -EELRARDLEVTDDSPKYNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVL 529 Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ+ D G + + + T + G +V H G L+ + Sbjct: 530 DKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQV 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ + Sbjct: 590 WLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQ 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682 +K E+ N++I PV T+ + G A+ Y D VRVVS+ Sbjct: 649 IKKAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLD 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L Sbjct: 709 DPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAG 768 Query: 740 EKLKSLA---SFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785 K L+ + +K +V + ++ E +++K +L + L+ ++D Sbjct: 769 SLKKPLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDD 828 Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L ADV + + S +K L + + M Sbjct: 829 LDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTAAM 888 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + E K + L V ++ +R A + + + L G GGG+ AQ+ G N Sbjct: 889 LFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGC 947 Query: 885 ADQAIAGVASFLK 897 +A+ SF + Sbjct: 948 LQEALQLATSFAQ 960 >gi|184200992|ref|YP_001855199.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201] gi|205830074|sp|B2GIA1|SYA_KOCRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|183581222|dbj|BAG29693.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201] Length = 895 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 320/927 (34%), Positives = 479/927 (51%), Gaps = 67/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I +L +F+ H ++PS+SL+ P MFT +GMVPF F GQE P YQ Sbjct: 1 MLSHEITQRWLSYFEARDHHVVPSASLVSQQ-PGAMFTIAGMVPFIPYFLGQETPPYQRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116 T+VQKC+R D+D VG+T RH TFF+M GNFSFG YFK +AI +AW+LLT Sbjct: 60 TSVQKCIRTL----DIDEVGKTARHGTFFQMAGNFSFGDYFKSQAIPMAWELLTTAPEQG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++TVY+ D+E++ LW GL A +I R+ ++N+W + GP GP SEIF Sbjct: 116 GFGLDPERLWVTVYEGDQESYDLWHDTVGLPAQRIQRMGRDENYWDTGQPGPAGPDSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231 +D+G G G + + +RYIEIWNLVFMQ+++ + LP+ +IDTG+G+E Sbjct: 176 YDRGPRY-GKDGGPAVDDDRYIEIWNLVFMQYQRGEGNGKDYEILGELPRKNIDTGLGVE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRSS 282 R+A +LQ N Y+ D + ++ A+ +++G Y ++ V RV+ DH+RSS Sbjct: 235 RLAMLLQGVENFYETDQVRPVLDAAAKLSGRTYHGAEKAGEQGYDDDVRMRVVADHVRSS 294 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 LIADG+ P NEGRGY+LRR++RRA+ RLLG TEP + LLP M YP + + Sbjct: 295 LMLIADGVTPGNEGRGYILRRLLRRAVRAMRLLGVTEPCLPVLLPESRDAMKGVYPVVAE 354 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIM 401 I +E+ F KT++ G L+ + G+ L+G AF L+DT G P+D+ Sbjct: 355 DFERISRIAYAEERAFLKTIESGTTRLEHAVEVAKGEQRALSGADAFALHDTFGFPIDLT 414 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++ G +D +F + EQR RA+ + + ++F GY Sbjct: 415 LEMAEEAG-VSVDETAFRALMAEQRQRAQEDARAKKGALADLSELRRMLDDHGSEFTGYT 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L + V+AI+ G V A G+ VEVV ++TPFY Sbjct: 474 ELVTP-----------------------TTVRAILSGGVSVPAASEGEHVEVVLERTPFY 510 Query: 522 AEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQ D G +L + DVQ+ +G+ VH V G + + +D + R Sbjct: 511 AEAGGQAADVGTIDSSDGAQLTVEDVQQPVKGLSVHKVTVSAGQVLVGDEVTARVDSRRR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 HS TH++H AL +LG Q GS LRFD +H + + + +++ IE N Sbjct: 571 HDGEAAHSGTHVIHAALHDVLGPDAVQRGSFNKEGYLRFDFSHGEALNAGQIQEIEQIAN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I + VVTR M +A GA +L G KY D VRVV + G S LCGGTHV Sbjct: 631 TAIRDDFEVVTREMPLAEAKKLGAMSLFGEKYGDEVRVVEM----NGPWSRELCGGTHVG 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGR 759 ST ++ L +VSE S+ +G RR+EA+ G + +HL + + L LKV + R Sbjct: 687 STSQLGSLSLVSEQSVGSGNRRVEALVGLNSFNHLAAERTLVNQLTGMLKVQSSAELPER 746 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVM 813 + ++ ++ + A + Q ++ V + H E+ + L+S+ Sbjct: 747 LAATLDKLKETERQLAGLRQQQLQAQAGQLARDAERVGPVTAVLHDAGEIASADALRSLA 806 Query: 814 DALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 L+ ++ S + + G++ + + V++ V + D A L R +A LGGGG GG Sbjct: 807 LDLRTRLGSEPAVAAVTGVAND-RPLVVVAVNDAARDAGLAAGQLVRTAATTLGGGG-GG 864 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 +P +AQ GG + K A+A + ++ Sbjct: 865 KPDVAQGGGSDAAKIPDALAAIRRQIQ 891 >gi|281350877|gb|EFB26461.1| hypothetical protein PANDA_021488 [Ailuropoda melanoleuca] Length = 976 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 310/977 (31%), Positives = 467/977 (47%), Gaps = 96/977 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ +++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGDDLIMLDIYAIEELRE-KG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + V A+ + VEE +GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G LR + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N +I PV T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ +VSE +I GIRRI A+TG A+ L + Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKN 772 Query: 744 SLASFL-KVSQGNVVGR--------------------------------VEEIWEEYRKL 770 SL+ KV V + +++I ++ + Sbjct: 773 SLSIMEAKVKAQTVPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--------LKSVMDALQKKIQS 822 ++++ + L + + S +K L + + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKATRGGGEGALNEALKLFKTHSPQ 892 Query: 823 GIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ML + E K + L V ++ +R A + + + L G GGG+ AQ+ G Sbjct: 893 TSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGK 951 Query: 881 NGNKADQAIAGVASFLK 897 N +A+ ASF + Sbjct: 952 NVGCLQEALQLAASFAQ 968 >gi|290986366|ref|XP_002675895.1| alanyl-tRNA synthetase [Naegleria gruberi] gi|284089494|gb|EFC43151.1| alanyl-tRNA synthetase [Naegleria gruberi] Length = 957 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 295/967 (30%), Positives = 472/967 (48%), Gaps = 98/967 (10%) Query: 3 NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 IR F+EFF+K H +PSSS++P DPTL+FTN+GM FK IF GQ P Sbjct: 16 TSKEIRKQFVEFFEKKYEHTFVPSSSVVPHEDPTLLFTNAGMNQFKAIFLGQASPDSSLA 75 Query: 59 --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI AW+LLT+ Sbjct: 76 KLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAITWAWELLTE 135 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + L++ RLY+T + DEEA ++W + + D I+ + DNFW M +TGP Sbjct: 136 VYGLEKDRLYVTYFGGNEKLNLPADEEAKQIWGQF--VPDDHILPGSMKDNFWEMGDTGP 193 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWN VFM+F ++ Q LP +DTGM Sbjct: 194 CGPCSEIHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFMEFNRKEDQTLEYLPAKHVDTGM 252 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHL 279 GLER+ ++LQ K +NYD D+F + +A ++ TG + + +RVI DH+ Sbjct: 253 GLERLVSILQNKMSNYDTDVFMPIFEAIQKETGSRPYTGKLGAEDVDHIDTAYRVIADHI 312 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 R+ ++DG P N GRGYVLRRI+RRA+ + + + + L + MG +PE Sbjct: 313 RTLVIALSDGGYPDNTGRGYVLRRIVRRAVRFGEFMNAKKGFLTRLASCVVELMGDFFPE 372 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397 L + +EE ++SE+ F KTL GL + + + + +++G AFKLY T+G P Sbjct: 373 LKKNSEKVEELIQSEEVLFAKTLRVGLKFFNRIAEKMKSNGESVVSGPDAFKLYATYGFP 432 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + +G+ +D++ + + +E+ + ++ I Sbjct: 433 VDLTLIMAQEQGMT-VDMVEYKKEMEKHATASQGTKQEATDMKLGVI------------- 478 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQK---VEV 513 K E + Q + + + V AI + VEE + + + + Sbjct: 479 ------ETDKLQNELKIEPTQDDIKYVWENIQAKVVAIFSESSGFVEELNTECEEVNIGI 532 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER---GILRTEMS 570 + DQT FYAE GGQ D G L++ +VQK A I + E G + + Sbjct: 533 ILDQTNFYAEGGGQAPDNGVLRIGETELKVVNVQKFAGYILHIVNVSESKLAGNVTVGTT 592 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + ++Y+ R ++ NH++TH+L+ AL +LG+ Q GS + + L FD + +K + Sbjct: 593 VSSEVNYERREPIAANHTSTHMLNFALRKVLGTDCDQQGSIVKEEELCFDFSAAKAPSVE 652 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------- 682 ++ +E VND+I + PV +++ R+ A +G A+ Y ++VRVVS+ Sbjct: 653 QVAEVEKIVNDLIVADHPVFSKVQERDAAYEINGLRAMFSANYGEQVRVVSIGQDSDSIM 712 Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 E + S CGGTH+ T + I+SE SI G RRI A+T + A+ + Sbjct: 713 TDRSNEKWRLISVEFCGGTHLKQTSQAQTFVILSEKSISTGKRRIVALTRKAAKEAVERA 772 Query: 739 D------EKLKSLASFLKVSQ-GNVVGRVEEIWE----EYRKLQLIHAK-----RKLQLN 782 ++L+ L+ L + + + + + + + RK+Q + Sbjct: 773 QKFSVKIDELEKLSDELFCPRYYELTSELTLLTDIPLLSKKAFEKRLEACQTKVRKIQQS 832 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL--------QKKIQSGI----IMLVGI 830 + K +S + ++ K LKS++ L KK+ + + L+ Sbjct: 833 QKKDDAEKAN--QLISQLKESIEQKSLKSLVYQLEDGSDQKFVKKVIDALTTIPVCLISK 890 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + +K VL V ++ +A KV+ G GGG+P AQ G + +K +A+ Sbjct: 891 ADDKTIIVLASVPQEQTATLSANTWVTEVCKVVS-GKGGGKPIFAQGRGSDVSKVAEAVK 949 Query: 891 GVASFLK 897 K Sbjct: 950 LAEEMAK 956 >gi|257892474|ref|ZP_05672127.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408] gi|257828853|gb|EEV55460.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408] Length = 819 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 319/857 (37%), Positives = 469/857 (54%), Gaps = 60/857 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D I I DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE E ERY+EIWNLVF +F + LP +IDTGMGLE Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +++Q+ + N++ DLF +I A E++ +KY ++++VI DH+R+ SF I D Sbjct: 234 RMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K IE Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F + ++ QR RAR+ S + L + ++FIGY Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + IV+ ++ E G+ +++FDQTPFYAE GG Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+ D G + + + +KA H + + + + L ID R ++ Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ I + Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL G KY VRVV++ S LCGGTHV++T I Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + E++ Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+LQ + + +L + I ++ + D +L+ + D ++K Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801 Query: 820 IQSGIIMLVGISKEKKA 836 S I++L KEK Sbjct: 802 NISDILVLQTNKKEKSV 818 >gi|289706211|ref|ZP_06502574.1| alanine--tRNA ligase [Micrococcus luteus SK58] gi|289557050|gb|EFD50378.1| alanine--tRNA ligase [Micrococcus luteus SK58] Length = 903 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 319/929 (34%), Positives = 481/929 (51%), Gaps = 75/929 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 I + FF+ GH ++PS+SL+ DP+L+FT +GMVPF F G++ P V Sbjct: 1 MKSQEIARRWTAFFESRGHRVVPSASLVSP-DPSLLFTVAGMVPFIPYFLGEQTPPSPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT Sbjct: 60 VSVQKCIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD RL++TVY ED+EA ++W++ G+ ++I R+ +DN+W+ + GP GPCSEIF Sbjct: 116 GFGLDPERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + + RYIEIWNLVFMQ+ + + L +IDTG+GL Sbjct: 176 YDRGPAY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELENKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281 ER+A +LQ N Y+ D + ++ + Q+ G Y ++ V R++ DH+RS Sbjct: 235 ERLAMILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRS 294 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI+DG+ P NEGRGYVLRR++RR + RL+G TEP+ LLP M YP + Sbjct: 295 ALMLISDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVA 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400 I +E++ F +T+ G LD + + G AF+L+DT+G P+++ Sbjct: 355 DEFERISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIEL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 +I G +D F + EQR RARA + SG T+ + G T F GY Sbjct: 415 TLEIAEEAG-VAVDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY 473 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + S+V+ ++Q GE V A +G ++E+V D TPF Sbjct: 474 TE-----------------------HTTESVVRGLLQNGEEVPSAGAGTELELVLDATPF 510 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ DTG GDG RL++ DVQ +G+ VH V G + + ID Q R Sbjct: 511 YAESGGQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 HS THL+H AL ILG +Q+GS LRFD ++ +++ +ED VN Sbjct: 571 LDGEKAHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAESLSAGARSEVEDVVN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I + V+T+ M+ E+A A GA +L G KY DRVRVV + G S LCGGTHV Sbjct: 631 IAIRDDHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEI----DGAWSRELCGGTHVG 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 T +I L ++ E S+ +G RR+EA+ G + HL + + L+ K + R+ Sbjct: 687 RTAQIGSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRI 746 Query: 761 EEIWEEYRKLQLIHAKRK----------LQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 + + + A+ + L +D++ V ++H +V +L+ Sbjct: 747 GATLDRLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSAGTTVRVLAHHAGDVAGDQLR 806 Query: 811 SVMDALQKKIQSG--------IIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAK 861 S+ L+ +I+S +++ + + + V++ E A + + + Sbjct: 807 SLALDLRTRIESAGGNAAGTPVLVALTAEAKGRPLVIVATNEAARAAGLKAGAMVKTATG 866 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 VLGGGG GG+ +AQ GG + + A+ Sbjct: 867 VLGGGG-GGKDDVAQGGGQDVTRVGDALD 894 >gi|1015321|dbj|BAA06808.1| alanyl-tRNA synthetase [Homo sapiens] Length = 968 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGK NDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKQNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + V A+ ++ VEE +GQ+ VV D+T Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I V T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 L+ + +K +V + ++ E +++K +L + L+ ++DL Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|330752116|emb|CBL87077.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium] Length = 870 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 325/919 (35%), Positives = 487/919 (52%), Gaps = 72/919 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R FL+FF H+++PS+ ++ NDPTLMFTN+GM FK F G V Sbjct: 1 MKSAEVRQQFLDFFASKTHKIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNSISKNVRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFKE AI AW+LL + +D Sbjct: 61 ADTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKEEAIAWAWELLVDVYKID 120 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LY+T+++ D EA+ W+KI L D+I+ +DNFW M + GPCGPCS Sbjct: 121 PSILYVTIFEGHEGDGLAKDTEAYDFWEKI--LPEDRILLGNKHDNFWEMGDQGPCGPCS 178 Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + G + + + +E+WNLVF++F ++ + LP +DTGMG Sbjct: 179 EIHVDMRSTEEKKAISGASLVNMDHPQVVEVWNLVFIEFNRKADRSLEKLPAQHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287 ER+ VLQ KT+NYD D+F LI E T + Y RVI DH R+ F +A Sbjct: 239 FERLCMVLQNKTSNYDTDVFTPLISKIEVKTNLVYGKEETIDCAMRVIADHARTVFFAVA 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L T+MG+ + EL K L Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGYTFLDLKEPFIFRLVETLETQMGAVFSELKAQKEL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R E+ F KTL++GL+LLD ++S ++ L G+ F+LYDT+G PLD+ I Sbjct: 359 AKNVIREEEVSFLKTLNQGLLLLDDLISKTKGNK-LKGEQVFELYDTYGFPLDLTALIAR 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G +D F +A+ Q+SR+RA S TE T F+GYD L S Sbjct: 418 EKGF-AVDEAGFEKAMAVQKSRSRAASSSSAEDWTE------INDMPITGFVGYDDLEHS 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RK + SG++ ++VF+ TPFY E GG Sbjct: 471 VQLVRYRK---------------------------INSVKSGEQFQLVFNATPFYPEGGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD+G +G + + KK + VH + T+ + + +D + R + N Sbjct: 504 QVGDSGILLGSDGDIITIEDTKKENNLIVH--FTKTLPKNTQNTFIAKVDAKERFRSKCN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H ALST+LG+HV Q GS + LRFD +H +++ E+K++E VN I + Sbjct: 562 HSATHLMHQALSTVLGTHVEQKGSMVHGANLRFDFSHFAKLSADEIKAVEAFVNARINEK 621 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + + R + +A+ASGA AL G KY D VR + S LCGGTHV +T +I Sbjct: 622 IVLEENRSVPVAEAMASGAMALFGEKYGDSVRTIRFGE------SIELCGGTHVKNTADI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSES++ +GIRRIEAITG+ +++ Q+ L + LK Q + + + Sbjct: 676 WHFKIVSESAVASGIRRIEAITGEAVQAYFESQEAILNHINENLKHPQDPI-KAISSLQA 734 Query: 766 EYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E L+ K ++Q ++L + ++F++ + ++ +K + L + Sbjct: 735 ENALLKKEIEKLSKLQIQAVKQELQSQLKSVNGIDFLAAEV-DLSPPAIKDLSFEL-GQG 792 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++ +++ K K + ++++L+ NA + + K + GGG GG+P A +G Sbjct: 793 KNNTFLVLVTRKGGKPVISCYISKELVAERSLNAGAVVKDLGKHIQGGG-GGQPFFATAG 851 Query: 879 GPNGNKADQAIAGVASFLK 897 G N + +A ASF++ Sbjct: 852 GKNTDGISAVLAASASFIE 870 >gi|261203393|ref|XP_002628910.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081] gi|239586695|gb|EEQ69338.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081] Length = 962 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 306/965 (31%), Positives = 462/965 (47%), Gaps = 95/965 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP IDTGMG ER+ Sbjct: 196 EIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPEIRR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG L + + L+G ++LYDT G P+D+ Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL N EE R +A+ S G G T + + ++ + Sbjct: 435 TQLMAEERGLTID-----NAEFEEARLKAKEASKGQGKQTADVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 D ++S +KAI + V+ G++ ++ D+ Sbjct: 482 ------LLETMDNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L+ IE Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + + SG A+ G Y D VRVVSV Sbjct: 656 ISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A E + L Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775 Query: 746 ---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776 A L+V + V +V +++ E + Q + +K Sbjct: 776 QRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQKLESK 835 Query: 777 RKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834 + L + D + + + + K + ++ ++ K+Q+ + + K Sbjct: 836 KALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMQNKSVYVFAADKGAG 895 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + L + A + ++ GG GG+ +A G K + AI Sbjct: 896 KVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDAIKAAT 954 Query: 894 SFLKK 898 +L+K Sbjct: 955 EYLEK 959 >gi|112984224|ref|NP_001037452.1| alanyl-tRNA synthetase, cytoplasmic [Bombyx mori] gi|135089|sp|P21894|SYAC_BOMMO RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|155955|gb|AAA27821.1| transfer RNA-Ala synthetase [Bombyx mori] Length = 967 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 307/969 (31%), Positives = 473/969 (48%), Gaps = 83/969 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 + IR TF++FF K GH+ + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 5 MTGNEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMA 64 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+LLT Sbjct: 65 QYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTD 124 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 F L + RLY+T ++ D E +W + G+ I+ + DNFW M ETGP Sbjct: 125 VFKLSRERLYVTYFEGDPSSGLEPDLECRNIWLNL-GVPEAHILPGSMKDNFWEMGETGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ +D+ + + +EIWNLVF+QF ++ +LP ID G+ Sbjct: 184 CGPCSELHYDRIGD-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPTKHIDCGL 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ +V+Q K NYD D F + +A E TG++ + +RV+ DH Sbjct: 243 GLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGVDDVDGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RRA+ YA L L+ + +G +P Sbjct: 303 RTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLGDVFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I + E+ +F KTL RG LL + L + L GDVA++LYDT+G P+ Sbjct: 363 EIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRLYDTYGFPI 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + +GL +D+ + + R ++ S G +G + I + Sbjct: 423 DLTQLMCEEKGL-NVDMEGYEK----SRKESQLVSQGKAAGQEDLIALDVHAISHLQD-T 476 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G S K + ++ + A+ + E V E SGQ+ V+ D+T Sbjct: 477 GIPATDDSPKYN-YLPSSTDKDALYTFAPCTAKIVALRKNKEFVSEISSGQECGVILDRT 535 Query: 519 PFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + D ++ T + +G +V HA GIL+ +L L ID Sbjct: 536 SFYAEQGGQIFDEGYMVKIDDETVEFTVKNVQVKGGYVLHAGKVEGILKVGDTLSLHIDT 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + RR + NH+ TH+L++ L +LG+ Q GS + PD LRFD T+ P+T ++K E+ Sbjct: 596 ERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPMTIKQIKDTEN 655 Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEYED 685 + +IIA+N V + +A +G A+ Y D VR + + + Sbjct: 656 EIKEIIAKNKTVYANYTSLSEAKKINGLRAMFDEHYPDPVRVVSVGVPVEDLIKNPDAPT 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKL 742 G S CGG+H+ T I IVSE I GIRRI A+TG A + + ++ Sbjct: 716 GFETSVEFCGGSHLHRTSHIGEYVIVSEEGIAKGIRRIVAVTGPEAIKAINKLSVLENEV 775 Query: 743 KSLASFLKVSQG-----NVVGRVEEIWEEY----------RKLQLIHAKRKLQLNVEDLS 787 ++A+F+K V ++ ++ E +L+ + K QL+ ++ + Sbjct: 776 NNVANFIKEQNESISHKEVSKKIVDLTNEISQAQISYWKKDELRNMLKNLKKQLDDKERA 835 Query: 788 CHKI----------------ADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGI 830 I + ++ + ++K L + +++ + M + Sbjct: 836 EKAIIITQVTEKAKELCLERKESKYIVSELKAFGNTKALDGALKQVKQFCPNSAAMFFSV 895 Query: 831 SKE-KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K+ K L V + D+ A + + ++GG G GG+ AQ+ G N N ++A Sbjct: 896 DKDADKIYCLAAVPKSDVEKGLLASEWVQSVVDIIGGKG-GGKAESAQASGNNPNSLNEA 954 Query: 889 IAGVASFLK 897 I + K Sbjct: 955 IQIANEYAK 963 >gi|239608271|gb|EEQ85258.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ER-3] Length = 962 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 305/965 (31%), Positives = 462/965 (47%), Gaps = 95/965 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP IDTGMG ER+ Sbjct: 196 EIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPEIRR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG L + + L+G ++LYDT G P+D+ Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL N EE R +A+ S G G T + + ++ + Sbjct: 435 TQLMAEERGLTID-----NAEFEEARLKAKEASKGQGKQTADVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 + ++S +KAI + V+ G++ ++ D+ Sbjct: 482 ------LLETMNNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L+ IE Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + + SG A+ G Y D VRVVSV Sbjct: 656 ISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A E + L Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775 Query: 746 ---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776 A L+V + V +V +++ E + Q + +K Sbjct: 776 QRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQKLESK 835 Query: 777 RKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834 + L + D + + + + K + ++ ++ K+Q+ + + K Sbjct: 836 KALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMQNKSVYVFAADKGAG 895 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + L + A + ++ GG GG+ +A G K + AI Sbjct: 896 KVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDAIKAAT 954 Query: 894 SFLKK 898 +L+K Sbjct: 955 EYLEK 959 >gi|170590129|ref|XP_001899825.1| Alanyl-tRNA synthetase [Brugia malayi] gi|158592744|gb|EDP31341.1| Alanyl-tRNA synthetase, putative [Brugia malayi] Length = 962 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 295/974 (30%), Positives = 433/974 (44%), Gaps = 93/974 (9%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +R F+ FF+ H + SSS+IP +DPTL+F N+GM +K IF G +P Sbjct: 1 MKALTCDEVRAAFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSS 60 Query: 59 -----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AW+L Sbjct: 61 EMAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWEL 120 Query: 114 LTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LTK + RLY++ + DEE ++W G+ I+ DNFW M + Sbjct: 121 LTKVLGIPGERLYVSYFGGDEKTGLDADEECRQIWLN-IGVPPSHILSFGMKDNFWEMGD 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 GPCGPCSEI +D+ + + +EIWNLVFMQF ++ LP+ ID Sbjct: 180 VGPCGPCSEIHYDRVGNRD-ASHLVNADDPMVVEIWNLVFMQFNREEDGSLKQLPRKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276 G+G ER+ VLQ K +NYD D+F L A T ++ + +RVI Sbjct: 239 CGLGFERLVAVLQNKLSNYDTDIFTPLFXAIHNGTKVRPYSGKVGADDVDGIDMAYRVIA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335 DH+R+ S ++DG P N GRGYVLRRI+RR + YA L + L+P + +G Sbjct: 299 DHIRTLSIALSDGGRPDNTGRGYVLRRILRRGVRYANEKLSAPPGFLSSLVPTVVNLLGK 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PEL + + + + E+++F KTL RG L ++ L IL GDVA++LYDT+G Sbjct: 359 TFPELHKDPQAVMDIINDEEKQFLKTLSRGRTLFQKAVAGLQGHNILPGDVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ Q + RGL + E R +A S + + I + Sbjct: 419 FPLDLTQLMAEERGLLVD-----FEVFENCRQKAAGISAAHANKMRDTIDLDV-NAISEL 472 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + G S K + + I+ A+ + ++ SG ++ Sbjct: 473 KNKGIPATDDSPKYKYYALSSEDQQTLYNFEKCEGIILALRKDKIFLDTLNSGDFGALIL 532 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ+ DTG + + G +V G L ++ I Sbjct: 533 DRTNFYAEQGGQIFDTGVLTEVDKGSEFIVSNVQIRGGYVVLVGTVEGQLCVGDKVIQAI 592 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL ++G V Q GS + PD LRFD+T +P+T +++ + Sbjct: 593 DEDRRNLIMKNHTGTHVLNFALRKVIG-EVEQKGSLVAPDRLRFDLTAKQPLTYEQIRMV 651 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 E +I N V + + +A Y D VR+VSV + Sbjct: 652 EKESQMLIDTNATVFAKNVPLAEARQINGLRAA---YPDPVRIVSVGIPIEELLRNKDSD 708 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 + CGGTH+ + G I L I E +I GIRRI A+TG A + D + Sbjct: 709 LAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRLEQR 768 Query: 745 LAS------------FLKVSQGNVVGRVEEIWEEY-----------------RKLQLIH- 774 + K RV E++EE + LQ + Sbjct: 769 VEDAHHKITTDHMVNLDKAQFKAATKRVLELFEEINQSQLPYCRKESIRKKAKALQKLLD 828 Query: 775 ---------AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGI 824 K++ +L F H+ S + K L S L+ +S Sbjct: 829 MHDREAKAVLADKVRCEASELDSSLKDGTLFTVHVFSKGANGKVLDSA---LKSITKSHA 885 Query: 825 IMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 IM +S + K + V++D A + +VL G GGG AQ+ G N Sbjct: 886 IMGFSVSDDGKVVAVARVSKDVASKGLQASEWISRVCQVL-DGRGGGTITQAQATGNNAE 944 Query: 884 KADQAIAGVASFLK 897 ++A F + Sbjct: 945 LVEEAAQIALKFAE 958 >gi|254581276|ref|XP_002496623.1| ZYRO0D04378p [Zygosaccharomyces rouxii] gi|238939515|emb|CAR27690.1| ZYRO0D04378p [Zygosaccharomyces rouxii] Length = 956 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 301/965 (31%), Positives = 466/965 (48%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R FL+FF+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRKAFLDFFKSKDHKFVASSPVVPYDDPTLLFANAGMNQYKPIFLGTVDPSSDFYH 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI AW+LLTK Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKQGAISYAWELLTKV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L RLY+T ++ D EAF+LWK G+ I+ DNFW M + GPC Sbjct: 130 YGLPADRLYVTYFEGDPKNGLEADMEAFELWKS-VGVDESHILPGNAEDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI FD+ + + +E+WNLVFMQF ++ LP IDTGMG Sbjct: 189 GPCSEIHFDRI-GGRNAASLVNMDDPDVLEVWNLVFMQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ+ +NYD D+F L +VTG++ +RV+ DH+R Sbjct: 248 FERVVSILQDYRSNYDTDVFTPLFARIHEVTGVRPYAGKFGAEDTDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + F IADG +P NEGRGYVLRRI+RR +AR L+P L +++ +P Sbjct: 308 TLVFAIADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGDFFSRLVPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396 E+ + + E L E+ F KTLDRG L + + L+G ++LYDT+G Sbjct: 368 EVAKDPSYLFEILNEEEVSFAKTLDRGERLFEKYADAATSSGKKTLDGLQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ G+ + + E G Sbjct: 428 PVDLTELMAEEKGLT-IDGPGFEKAKQESYEASKRGGKKDGAEVLKLNVHEISELNGENV 486 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + V S + + + V E G+K V+ Sbjct: 487 ------------------PKTKDEYKYGMENVDSTILKLHDGTKFVNEISEPGKKYGVIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + + G H + G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKLVIDDVAEFNVENVQLYNGFVFHTGSLLEGKLSVGNKIIASY 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG+ + Q GS + P+ LRFD +H K + + E+ + Sbjct: 589 DELRRFPIKNNHTGTHILNFALREVLGNDIEQKGSLVAPEKLRFDFSHKKGMAADEILKV 648 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVRVVSVE-----------Y 683 ED N I +N+ V + + DA + A+ G Y D VRVVSV Sbjct: 649 EDICNKQIKENMSVYYKDVPLTDAKSIYGVRAVFGETYPDPVRVVSVGKSVDDLLANPSN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737 E+ +S CGGTHV TG+I + I+ ES I GIRRI A+TG A Sbjct: 709 EEWSKYSVEFCGGTHVVKTGDIKVFVILEESGIAKGIRRIVAVTGSEAYEAQRIANEFDK 768 Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 +++KLK L+ L VS+ + + +I + + AK++ Sbjct: 769 ELNAVDRLPFSPLKEKKLKELSVKLGQLSISVVSKQELKTKFAKIEKVVKDEIKTRAKQE 828 Query: 779 LQLNVEDLSCHKIADVN--FMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834 + ++++ + + N F++ + ++K + ++ ++ + I L G E Sbjct: 829 SKKTLDEVKEYFAKNENSQFLAKFVDIPTNAKAITEAVNYVKSSAKDKSIYLFTGNDPEG 888 Query: 835 KASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + +++ L + +A+ + ++ GG GGR ++ Q G A A+A V Sbjct: 889 KIAHGCYISDAALSKGIDGSTVAKQVSGII-GGKAGGRGNVFQGMGDKPTAAGDAVAEVE 947 Query: 894 SFLKK 898 K+ Sbjct: 948 KLFKE 952 >gi|296122797|ref|YP_003630575.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776] gi|296015137|gb|ADG68376.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776] Length = 870 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 306/916 (33%), Positives = 472/916 (51%), Gaps = 71/916 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R +L+FF G PS L+P +DPT++FT +GM FKN F G + Sbjct: 1 MKTDELREKYLDFFVGKGCLRRPSDVLVPKDDPTVLFTPAGMNQFKNQFLGIGPLDFTKA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+R G D+ NVG T+ HHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 61 TTCQKCLRTG----DISNVGVTSYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSE 174 L+ RL +T Y +D+EA +W+ GL + +I R +NFW G CGPCSE Sbjct: 117 LEPSRLTVTAYLDDDEAVGIWQNEIGLDSKQITREDEYENFWPAGSPTNGPDGVCGPCSE 176 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232 I++ + + +EIWNLVF QF + LPK +IDTGMGLER Sbjct: 177 IYY-------------TPPSGKKVEIWNLVFTQFNRVGDPPNNLRPLPKKNIDTGMGLER 223 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 A V+Q +NY+ID+ + L ++ G+KY+ + R I DH+R+ +F I +G Sbjct: 224 TAAVMQGFESNYEIDILRPLCDRGGEILGVKYDFASPVGRPLRRIADHVRACTFAIHEGC 283 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P E Y++R ++RRA LLG EP + L+P + M YPEL Q + Sbjct: 284 VPGPEKENYIIRLLLRRASMEGFLLGKREPFLSQLVPMIAEVMRKPYPELHQTIEAVSHV 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE+++F ++RGL ++ L+GD AF L+ T G +++ + + Sbjct: 344 IESEEKQFLGVVERGLTKFRKLVDQARSANRTSLSGDEAFDLHQTDGFLIELTETLAAQE 403 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G +D+ F + EE + + + + I +K G T+F+GY+ + Sbjct: 404 G-VSVDMARFKECREEAKKASGRGAFADSVMSEGPI--DALKKSGGTEFLGYEAIES--- 457 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQ 527 + ++ I+ ++ E S + +V D+TPFY E+GGQ Sbjct: 458 --------------------KATIRGIIADKKLAESYSSPLVTIGIVLDKTPFYGESGGQ 497 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG + D QK E +FVH ++ G L+ + +D R + H Sbjct: 498 VGDTGTIRTASGEFTVYDTQKDGE-LFVHIGQLKAGSLKVGEEVTAGVDAHRRAAIRRAH 556 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATH+LHHAL T LG + +Q GS + D LRFD H + +T+ EL SIED +N +IA+ Sbjct: 557 SATHILHHALRTTLGENATQRGSKVEGDQLRFDFAHPRSLTNEELISIEDQINQLIAEGA 616 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 P+ TR+M +A GA AL G KY D VRVV + G S CGGTH+S+TG++ + Sbjct: 617 PINTRVMPINEAKKLGAMALFGEKYPDFVRVVEM-----GDFSREFCGGTHLSNTGQVGI 671 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 +V + + AG+RRI +TG +A + + + L+ + +K + + +V + +E Sbjct: 672 CRVVKDELVAAGVRRISCVTGPKAIARMRESENLLREVGMLVKATTAEELPRKVAALQDE 731 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R + ++ Q + + D+ + H E+ ++LK ++D ++ + Sbjct: 732 LRVAKKELSQYASQSLAGMAAKLVNDAPMVGDIKVIVHRADELAREQLKELVDQIRAQAG 791 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S + LVG + + K S++ T+DL RF+A D + +AK++GGGG GGR +A++GG Sbjct: 792 SAAV-LVGQAVDGKVSLIAGATKDLAQRFSASDAVKAAAKLVGGGG-GGRAELAEAGGKI 849 Query: 882 GNKADQAIAGVASFLK 897 K D+A+ +FLK Sbjct: 850 PEKLDEALQEGLAFLK 865 >gi|149178839|ref|ZP_01857419.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797] gi|148842314|gb|EDL56697.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797] Length = 875 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 318/917 (34%), Positives = 483/917 (52%), Gaps = 72/917 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R ++L FF++ G PS L+P +D T++FT +GM FK+ F G K + + Sbjct: 1 MKTDELRESYLSFFEEKGCVKRPSDVLVPRDDKTVLFTPAGMNQFKDQFLGVGKLEFPSA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q C+R G D+ NVG T HHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 61 TTCQMCLRTG----DIQNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEYLTDKKYLG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174 LD L +TVY ED+EA+ +W L A++I R ++NFW S G CGPCSE Sbjct: 117 LDPSLLSVTVYQEDDEAYNIWHDEIKLPANRISRENEHENFWPAGAPSDGPDGVCGPCSE 176 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232 IF+ GG EIWNLVF QF + LPK +IDTGMGLER Sbjct: 177 IFY----HPNGGKDNV--------EIWNLVFTQFNRVGNPPDNLKPLPKKNIDTGMGLER 224 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290 A+VLQ +N++ID K L A+ + G Y+ + R I DH+R+ +F I +G+ Sbjct: 225 TASVLQGVRSNFEIDTLKQLCLAAGDIVGTGYDFDAPSGRPVRRISDHVRAITFSIHEGV 284 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P + YV+R+++RRA+ LLG EP + L+PA+ M + YP++ + ++ T Sbjct: 285 NPGRDKESYVVRQLLRRALLEGYLLGKHEPFLHRLVPAVVEIMKAPYPDIAKTVENVQST 344 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E+E+F +++GL +G L + +++G+ AF L+ T G +++ + + Sbjct: 345 IKEEEEQFLGVIEKGLSRFEGFLKSAEQAGSSVISGEDAFDLHQTDGFLIELTEALAAKN 404 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ++ + ++ + L S +E +L + T F GY+ Sbjct: 405 NMSVNRTE--FNNMMQRHQKDSGSGAFLDSVMSEGPLTALHKTISETDFKGYE------- 455 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVVFDQTPFYAEAG 525 T S V I+ + +VE V V VV DQTPFYAEAG Sbjct: 456 ----------------TTTTESKVIGIIAEDRLVESMVEKGHAHPVVVVLDQTPFYAEAG 499 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GDTG DGI+ ++T+ QK A +++H + G L +L T+ R + Sbjct: 500 GQVGDTGFLEADGIKFEVTNTQKNAG-LYLHIGHLLTGKLEQGQTLTATVTEPRRSGIQR 558 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HSATHLLHHAL T+LG + Q GS + D LRFD +HSK +T E+ IED +N +++ Sbjct: 559 AHSATHLLHHALHTVLGENAMQRGSKVEEDTLRFDFSHSKAVTPEEISRIEDIINQRVSE 618 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PV T +M + A GA AL G KY D VRVV + G S+ LCGGTH+S+TG++ Sbjct: 619 GAPVTTELMKLQKARELGAMALFGEKYPDYVRVVQM-----GDFSTELCGGTHLSNTGQV 673 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIW 764 L I++E + G+RRI A+TG +A ++ L +A+ +KV ++ R++ + Sbjct: 674 GLCKIINEELVAKGVRRIYALTGPKALEKTRDTEKLLLEIAAQMKVPRPDDLPVRIQHLQ 733 Query: 765 EEYRKLQLIHAK--RKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKK 819 +E R+ + K K D + + DV +++ + +L+ + D L+KK Sbjct: 734 DELRETKKQLTKFSSKSLAGTADDLLEEAPVVNDVKIVAYHAKDASRDQLRELADHLRKK 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + +++G + K +++ V DL+ A D + +AKV+GGGG GGRP MA++G Sbjct: 794 -GKQVALILGTVLDGKVALMAAVNSDLVKQGLKAGDCVKAAAKVVGGGG-GGRPDMAEAG 851 Query: 879 GPNGNKADQAIAGVASF 895 G + +K D+A+ A + Sbjct: 852 GKDPDKLDEALTTGADY 868 >gi|114663431|ref|XP_001169474.1| PREDICTED: alanyl-tRNA synthetase isoform 1 [Pan troglodytes] gi|114663433|ref|XP_001169520.1| PREDICTED: alanyl-tRNA synthetase isoform 2 [Pan troglodytes] Length = 968 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 313/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++ +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + V A+ ++ VEE +GQ+ VV D+T Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I V T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESMKK 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 L+ + +K +V + ++ E +++K +L + L+ ++DL Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|169154546|emb|CAQ13590.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS) [Danio rerio] Length = 988 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 309/970 (31%), Positives = 471/970 (48%), Gaps = 93/970 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 31 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 91 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWNLVF+QF ++++ LPK SIDTGMG Sbjct: 210 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 268 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ G + + +RV+ DH R Sbjct: 269 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 328 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A+PE Sbjct: 329 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 388 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G PLD Sbjct: 389 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 448 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I RG+ G+D+++F + ++ A+ S G GSG + I + Sbjct: 449 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 495 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D LR D K V A+ ++ V+E ++GQ+ V+ Sbjct: 496 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 554 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ D G + + + + G +V H G L+ L L Sbjct: 555 DKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRLTLH 614 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E++ Sbjct: 615 VDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDEVRR 673 Query: 635 IEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E+ +IA V G A+ Y D VRVVS+ Sbjct: 674 TEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADPN 733 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK- 741 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ D Sbjct: 734 SPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADALK 793 Query: 742 --LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSC 788 L +LA +K Q + E + ++RK ++ + + L+ ++DL Sbjct: 794 LSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLDR 853 Query: 789 HKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ADV + + S +K L + L+ ML Sbjct: 854 ASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLFT 913 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K L V +D+ +R A + + +L G GGG+ AQ+ G N + Sbjct: 914 VDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQE 972 Query: 888 AIAGVASFLK 897 A+ + F + Sbjct: 973 ALQLASEFAR 982 >gi|206901044|ref|YP_002250743.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12] gi|206740147|gb|ACI19205.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12] Length = 866 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 327/909 (35%), Positives = 488/909 (53%), Gaps = 58/909 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR F+++F KN H LPS+SL+P +DPTL+FT +GMVPFK F GQ P + Sbjct: 1 MMKSSDIRRKFIDYFVKNDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGVPPKRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TTVQKC R D++ VG T RH TF EMLGNFSFG YFK AI A++ LTKE + Sbjct: 61 ITTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGI 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179 +L+I+VY+ED+EA+ +W K G+ ++I+R+ DNFW TGPCGPCSEI++D Sbjct: 117 PVSKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDF 176 Query: 180 GECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G + +R++EIWNLVFM + + LP+ +IDTGMGLER+ TV++ Sbjct: 177 GPKTKEEENCKPGDPCDRFMEIWNLVFMAYYMDEDGKLSPLPQKNIDTGMGLERITTVVE 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +N ++ DLF +IQ + + R+I DH+R +FL+ DG++P NEGRG Sbjct: 237 GVSNVFETDLFLPIIQEIKNIIENSDPTTE----RLISDHIRGITFLMGDGVVPTNEGRG 292 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RR++ A G EP + L+P + M AYPELI K I++ L E+E+F Sbjct: 293 YVLRRLIRRSLRRAYKHGIKEPFLYKLVPVVVEIMKEAYPELIDRKDYIQKVLIREEEQF 352 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL++GL LL+ + +++++G+ AFKLYDT+G P+++ Q+I G IDI F Sbjct: 353 LRTLEQGLALLEDYFKKVS-NKVVSGEFAFKLYDTYGFPIELTQEIAGEEGFK-IDIDEF 410 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKE---KYGATQFIGYDLLRGSKFMKEDRKV 475 N+ +EEQR +ARA + + T+F+GYD L Sbjct: 411 NKYMEEQREKARASMEEKLEESFISLSDEEVYYMRNLPKTEFVGYDTLETESN------- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 G+ + + G++V + D+TPFYAE GGQ+ D G Sbjct: 464 -----------------VLFFVGGKHGKNILEGEEVYFLMDKTPFYAEGGGQVSDKGKVY 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++I DV+K E +H V +G + + +D + R +H+ATHLLH Sbjct: 507 NSEVEVEILDVKKLGEDFIIHRGKVLKGEFKEGQIVKAEVDKEKRYHTMRHHTATHLLHS 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG+HV Q+GS ++P+ LRFD TH P++ +LK IE VN+ I N V Sbjct: 567 ALREYLGTHVMQSGSLVSPEFLRFDFTHHSPLSYEDLKIIEKKVNENILANHKVEKFWTT 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA AL KY VRV+ ++ S LCGGTHV TGEI YIV E Sbjct: 627 LEEARRMGAIALFTEKYQKNVRVIKIDN-----ISMELCGGTHVDYTGEIGSFYIVKEEG 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +GIRRI A+ G +A + ++E + ++ L S V +VE++ E ++ + Sbjct: 682 IGSGIRRIFAVCGLKAWEYQKRKEEIVNKVSLLLNSSLDEVHIKVEKLLNELKEKERKIK 741 Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + ++ + KI + + + + ++++ +K + D L+ K +IML Sbjct: 742 DLEEKVIKREAEVLLNNVDKIDNFSLICASL-DMENDAIKRLGDYLKNK-DDNLIMLFFR 799 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K ++V + L+ A + L + G GGG+ +AQ P N I Sbjct: 800 PLDNKLVGTVMVGKKLISKGITAKKIVDLIGERFN-GKGGGKDTLAQISLPKTN-----I 853 Query: 890 AGVASFLKK 898 + FLK+ Sbjct: 854 EEIKGFLKE 862 >gi|88856253|ref|ZP_01130913.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1] gi|88814572|gb|EAR24434.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1] Length = 884 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 310/916 (33%), Positives = 479/916 (52%), Gaps = 55/916 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I+ +L +F + GH ++PS+SL+ +DPTL+FT +GMVPF TG + Sbjct: 1 MQTADIQNRWLTYFGERGHTIVPSASLV-SDDPTLLFTVAGMVPFVPYLTGLVPAPFDRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116 T+ QKC+R D++ VG+T RH TFF+M GNFSFG YFK+ AIQ AW+ LT Sbjct: 60 TSSQKCIRTL----DIEEVGKTPRHGTFFQMNGNFSFGDYFKKEAIQFAWEFLTLPESDG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L++TVY++D++A WK+ +GL ++I R+ + N+WS + GP GPCSEIF Sbjct: 116 GLGFLPEDLWVTVYEDDDDAVAYWKETAGLPDERIQRLGMDTNYWSTGQPGPAGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231 FD+G G G + + +RY+EIWNLVFMQ+ + + + LP +IDTGMGLE Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGEGKGKEFSILGELPNQNIDTGMGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289 R+A + Q N Y+ID + ++ + +++G Y ++ V RV+ DH+RSS LIADG Sbjct: 235 RVAFLKQGVENMYEIDQVRPVLDMAAELSGHTYGADHEADVRLRVVADHVRSSLMLIADG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR++RR + RLLG L PA M AYPE+ + I Sbjct: 295 VTPSNEGRGYVLRRLLRRTVRAMRLLGVEGTTFAELFPASRDAMKDAYPEVEKDYDRISR 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407 + +E++ F +TL G +LD + H + L D AF L+DT G P+D+ ++ Sbjct: 355 VVLAEEDTFLRTLASGTTILDTAVVHTKESGASELPSDTAFLLHDTFGFPIDLTLEMAAE 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL+ +D +F+ ++EQR RA+A + + + +G T F GY+ L Sbjct: 415 AGLS-VDREAFDTLMKEQRDRAKADASSKKQYLADLSVYGAFRAHGETTFTGYETLETD- 472 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S V I+ G V A SGQ E++ +T YAE+GGQ Sbjct: 473 ----------------------SSVIGIIVDGVSVSRAASGQIAEIILAETSLYAESGGQ 510 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G +G L++ DVQ+ +G+ H + G + +D RR + H Sbjct: 511 EADAGAIVGASFHLEVLDVQRPVKGLISHKVRITAGEVGVGDPATALVDADWRRGATQAH 570 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATH++H AL ILG Q+GS +R D + S+ +++ IE+ N + NL Sbjct: 571 SATHVIHAALRQILGKDAHQSGSYNKAGYMRLDFSWSQALSAETKSEIEEVANTAVRDNL 630 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V TRIM +DA GA AL G KY D VRVV + GG S LC GTHVS + EI L Sbjct: 631 EVSTRIMALDDAKDLGAMALFGEKYGDTVRVVEI----GGPWSLELCAGTHVSRSAEIGL 686 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + +V ESS+ + RR+E++ G A + + + L S LK + + R+ E+ Sbjct: 687 ISLVGESSVGSSNRRVESLVGMNAFRNFAAERAIVSELTSSLKTPREQLPDRIAELMANL 746 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQ 821 + + A+ + + + S + VN + + E+ S +L+ ++ ++++++ Sbjct: 747 KSAERKIAQLEAGQLSQRVPALIESARALGSVNAVIENVGELPSTDDLRGLVQSVRERMG 806 Query: 822 -SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ++ + + K +V++ + A +A + GGGGGG+P +AQ GG Sbjct: 807 AEASVVALAATIGDKPAVIVATNDASRAHGFAAGALAKAAAGVLGGGGGGKPDIAQGGGA 866 Query: 881 NGNKADQAIAGVASFL 896 N A+A + + L Sbjct: 867 NPAAIPDALALITATL 882 >gi|330443884|ref|YP_004376870.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58] gi|328806994|gb|AEB41167.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58] Length = 874 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 324/906 (35%), Positives = 486/906 (53%), Gaps = 48/906 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R+ FL F+ H+++PSS + P DP+++FTN+GM FKNIF +E Y Sbjct: 1 MLSNLLRSKFLNFYANRHHKIIPSSPVFPHQDPSILFTNAGMNQFKNIFLNKETVSYSRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK A AW+ F+ Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKADATTFAWEASLSVFNFA 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW++ L ++I R+T DNFWSMA+TGPCG CSE+ FD+G Sbjct: 121 PEFIYATVHEKDDEAFALWERY--LPTERIFRLTDKDNFWSMADTGPCGYCSELLFDRGP 178 Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P EGER++E WNLVFM+F + + + LP +DTG GLER+ +++ Sbjct: 179 KFGSASSPLEDIEGERFLEYWNLVFMEFNRTAEGDLLSLPNKHVDTGAGLERLISLISGT 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ + LI EQ++G Y + RVI DH+RS SF IADG+LP N RG Sbjct: 239 NTVFEADVLRMLIGKIEQLSGKTYCPDSPHGAAFRVIADHIRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y R LG+ +P + ++P+L MG AYPEL + I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGRRLGFQQPFLAEIVPSLADAMGEAYPELRLSLTQIQEVLSNEEECF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL +++G+ AFKL DT+GLP+D + + +D+ +F Sbjct: 359 LKTLHRGGNLLQQVLKASSSSSVISGEDAFKLKDTYGLPIDEIFLLAKDYNF-QVDMETF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +E + R+R HS+ ++ L E +FIGYD L F Sbjct: 418 ALLEQEAKERSRKHSVKTQEEVK-VVYEQLPELSV--EFIGYDTLSCDTF---------- 464 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++AI+ Q +IV G++ ++ TPFYAE GGQ+GD+G Sbjct: 465 -------------IEAIISQDQIVSSLQEGEEGILILKTTPFYAEKGGQVGDSGEIFSQE 511 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G HH + +G L ++ ++ R++++ NH+ HLLHHAL+ Sbjct: 512 GSFIVSHTTTPQAGFIAHHGKMSQGKLSQAEAVTTQVNCIRRKKIANNHTGCHLLHHALA 571 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++LG+H+ Q GS + +R D T+ K I +L SIE VND+I +N PV+TR D Sbjct: 572 SVLGNHIRQAGSYVDETKIRLDFTYPKAIAPEDLASIESLVNDLIRENHPVLTRETLYSD 631 Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + G KY D VRVVS S LCGGTH +TG++ IV E +I Sbjct: 632 VMNSKEIKQFFGDKYGDTVRVVSAG------VSHELCGGTHAQATGDLGYFRIVKEHAIA 685 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEAITG+ A + + + L A L+ + ++ ++ E+ +K + + Sbjct: 686 TGIRRIEAITGEEAEAASRQERKLLDEAALLLQAPKDQLLAKLTHALEQRKKQDKVISDL 745 Query: 778 KLQLNVEDLSCHKIA------DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + +L L I +++++ + ++E + L+ + +K+ I L Sbjct: 746 ENKLISAQLD-ELINQRHSSHEISYLVYHLAEKEGHHLQQYANCFHQKLPQRSISLWITK 804 Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K +K VL ++EDL F A +L + GG GG AQ + ++ Sbjct: 805 KNRKYIVLSRISEDLAAQGFQAQELLKAILAP-YGGRWGGAKLSAQGSASSLPATEELYQ 863 Query: 891 GVASFL 896 + ++ Sbjct: 864 TLWQWI 869 >gi|169154547|emb|CAQ13591.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS) [Danio rerio] Length = 963 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 309/970 (31%), Positives = 471/970 (48%), Gaps = 93/970 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWNLVF+QF ++++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ G + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A+PE Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G PLD Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I RG+ G+D+++F + ++ A+ S G GSG + I + Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D LR D K V A+ ++ V+E ++GQ+ V+ Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ D G + + + + G +V H G L+ L L Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRLTLH 589 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E++ Sbjct: 590 VDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDEVRR 648 Query: 635 IEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE----------- 682 E+ +IA V G A+ Y D VRVVS+ Sbjct: 649 TEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADPN 708 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK- 741 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ D Sbjct: 709 SPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADALK 768 Query: 742 --LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSC 788 L +LA +K Q + E + ++RK ++ + + L+ ++DL Sbjct: 769 LSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLDR 828 Query: 789 HKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ADV + + S +K L + L+ ML Sbjct: 829 ASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLFT 888 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K L V +D+ +R A + + +L G GGG+ AQ+ G N + Sbjct: 889 VDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQE 947 Query: 888 AIAGVASFLK 897 A+ + F + Sbjct: 948 ALQLASEFAR 957 >gi|119195813|ref|XP_001248510.1| alanyl-tRNA synthetase, cytoplasmic [Coccidioides immitis RS] Length = 1023 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 292/966 (30%), Positives = 465/966 (48%), Gaps = 96/966 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60 +R TFL+FF+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 78 KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 137 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L Sbjct: 138 AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 197 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T ++ D E LW G+ D I+ DNFW M + GPCGPC Sbjct: 198 EPDRLYVTYFEGNKDAGIEPDLETKDLWLS-VGVKEDHILSGNMKDNFWEMGDQGPCGPC 256 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SE+ +D+ + + +EIWN VF+Q+ ++++ LP +DTGMG ER Sbjct: 257 SEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 315 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283 + +VLQ+K +NYD D+F L A ++TG++ +RV+ DH+R+ + Sbjct: 316 LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDVDGIDTAYRVVADHVRTLT 375 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341 F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ Sbjct: 376 FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 435 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399 + + + E L E+ F KTLDRG + L+G ++LYDT G P+D Sbjct: 436 KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 495 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + Q + RGL+ ++ R +A+ S G ++ + S+ + Sbjct: 496 LTQLMAEERGLSIDNVEFEEA-----RLKAKEASKGQAKAASDLLKLSVHDL-------- 542 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516 +++D+ + S + AI E V+ G ++ ++ D Sbjct: 543 -------SKLEKDKVPKTNDDAKFGRGNILSQIVAIYHDKEFVDSTSGIPEGDQIGIILD 595 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +T FYAE GGQ DTG I DG + G H ++ G L S++ D Sbjct: 596 KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVFHTGFIKYGDLSVGDSVISEYD 655 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + NH+ TH+L+ AL +LG+ + Q GS + + LRFD +H ++ ++L+ IE Sbjct: 656 ELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKIE 715 Query: 637 DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 + + I QN V ++ + +G A+ G Y D VRVVSV Sbjct: 716 EKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKDP 775 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736 S CGGTHV TG+I L I+ E I GIRRI A+TG+ A Sbjct: 776 RWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGDR 835 Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHA 775 ++++ K + + L + V + +++ E + LQ Sbjct: 836 LNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQEI 895 Query: 776 KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 K L + D + + + + ++K + ++ + K++ I + E Sbjct: 896 KAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAEQ 955 Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + + V+ L +A + + + + ++ GG GG+ + G ++ D+AI Sbjct: 956 GRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEAA 1014 Query: 893 ASFLKK 898 +L++ Sbjct: 1015 TKYLEQ 1020 >gi|301335327|ref|ZP_07223571.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1] gi|301336313|ref|ZP_07224515.1| alanyl-tRNA synthetase [Chlamydia muridarum MopnTet14] Length = 875 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 336/890 (37%), Positives = 496/890 (55%), Gaps = 45/890 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y Sbjct: 1 MLSNTLRSNFLKFYANRNHTPVTSSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 61 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +Y TV+++D+EAF LW+K L DKI R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDKIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178 Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRASDGTLLALQKKCVDTGAGLERLVSLLAET 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RG Sbjct: 239 ETVFEADVLRHLIAKVENLSGTTYSPTESKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+I+RRA+ Y + LG+ P + ++P+L MG AYPEL ++ I+E L +E+E F Sbjct: 299 YVLRKILRRAVNYGKRLGFHRPFLAEVVPSLVETMGEAYPELQASETQIQEVLTTEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RG LL VL ++G+ AFKL DT+GLP+D + + +D+ +F Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDHDYT-VDMETF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + E + R+R ++ S + I+ L + ++F+GY +L F Sbjct: 418 EKLEMEAKERSRKNTAKTTSDS-NSIFLDL-DPTNTSEFVGYHMLSCDTF---------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ IV+ EI G++ E++ TPFYAE GGQ+GD+G + Sbjct: 466 -------------IEGIVKYNEIATTLEEGEEGEIILRTTPFYAEKGGQIGDSGEIFCES 512 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ G+ VHH + +G L+T M++ ++ R++++ NH+ HLLH AL Sbjct: 513 GTFLVSHTTTPKAGLIVHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R D Sbjct: 573 ITLGEHIRQAGSYVDSKKIRLDFTHNKALSPEDLLAIETIVNEKIRENDPVTIREALYSD 632 Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +S G KY D VRVVS S LCGGTH +TG+I I E ++ Sbjct: 633 VTSSSEIKQFFGDKYGDVVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GIRRIEAITG+ A + GQD L +AS ++ + ++ ++ + EE R+L A Sbjct: 687 TGIRRIEAITGEDAETLARGQDADLNEIASVIQSPKDQILVKIRNVIEEKRELAKQVADL 746 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + QL + + KI + ++ ++++E + + ++ +AL K+I + I L K Sbjct: 747 ENQLVQQHVKSLLPACDKIDETLYLGYLLTEEEGQRIQQYANALHKEIPANFISLWVTEK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + VLI V++DL+ R +A L GG GG+ AQ Sbjct: 807 SGRYIVLIRVSDDLIKRGIHAQVLLEELLAP-YGGRCGGKAISAQGSSKE 855 >gi|297571413|ref|YP_003697187.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931760|gb|ADH92568.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 890 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 322/923 (34%), Positives = 500/923 (54%), Gaps = 60/923 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F K+ H + S SLI DP+++FT +GMVPF G EK + + Sbjct: 1 MRTAEIRQRWLDYFAKHNHHIAESVSLISP-DPSILFTIAGMVPFTPYIIGTEKSPHPRI 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVGRT RH TFF+M GNFSFG YFKE AI LA+ LLT Sbjct: 60 ASVQKCIRT----NDIDNVGRTTRHGTFFQMCGNFSFGDYFKEGAIDLAFGLLTSSVDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + L++ RL++T++++D+ +F K+ GL+ I+++ + FWS + GP G C+EI Sbjct: 116 GYGLEKDRLWVTIWEKDDVSFDHLTKVIGLNPRHIVKLKREEIFWSTGQPGPAGSCAEIH 175 Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMG 229 +D+G G+RY+EIWNLVF Q+ + + + L + +IDTG G Sbjct: 176 YDRGPEFGPEAVGGTVDPGGDRYLEIWNLVFDQYLRGEGEGKNFPLLGELEQTAIDTGAG 235 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287 LER+A +LQ K N Y+ID +IQA+E++TG Y N+ + RV+ DH+RSS LIA Sbjct: 236 LERIAYLLQGKKNMYEIDEVYPVIQATERITGKTYGENDEDDILMRVVADHVRSSMMLIA 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RRA+ RLLGYT+ LLP M +YP L I Sbjct: 296 DGVRPGNDGRGYVLRRLIRRAVRSVRLLGYTDVAYPELLPVTKDAMKDSYPVLEAEFDRI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILC 406 + +E++ F +TL G + + + + I L GD AF L+DT+G P+D+ ++ Sbjct: 356 SQIAYNEEQAFRRTLTAGTQIFEQAAAEAKEAGIQLPGDAAFTLHDTYGFPIDLTLEMAS 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYGATQFIGYDLLR 464 +G +D F Q ++EQ+ RARA + +G + ++ + + G T+F+GY Sbjct: 416 EKG-IAVDEAGFRQLMQEQKDRARADAQAKKTGHVDATVYHEIQAKSGGDTRFLGYTD-- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 V I++ G V A + ++++V DQTPF+AE Sbjct: 473 ---------------------YVADGKVIGILKDGVSVPAAEAPAEIDIVLDQTPFWAEQ 511 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G ++ G + +TDVQ +G+FVH + G + + S+ ID R Q+ Sbjct: 512 GGQLADHGTISVAGGGLVDVTDVQMPVKGLFVHRGTLTEGSIALDDSVRSAIDIPRREQI 571 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H+ATH++H AL LG +Q GS +P LRFD H + + + L IE VN+ + Sbjct: 572 ARAHTATHMVHKALHEYLGEQATQAGSENSPSRLRFDFRHGEQVPTTILHDIESRVNERL 631 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V +MN E A ASGA AL G KY + VRVVS+ GG S LC GTHVS +G Sbjct: 632 QDNLTVSAEVMNIEAAKASGAMALFGEKYGNDVRVVSI----GGDWSRELCAGTHVSDSG 687 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I L+ ++ ESSI +G+RRIEA+ GQ A + + L L++ V + ++ + Sbjct: 688 AIGLVTVLGESSIGSGVRRIEALVGQGAYAAGARERALLSQLSTLTHVRPEELPEHIDTL 747 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV-DSKELKSVMDALQ 817 + + + + + ++ I + ++H + +V + +++ + L+ Sbjct: 748 LNRLKNADKEISALRKEKMLSAMASVLEQRTDINGIAVITHDLGDVASADDVRVAVMDLR 807 Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +++ S ++ L G++KE+ V+ A L ++AK+LGGGG GG+P MA Sbjct: 808 ERLGSTPAVVALTGVAKERPTIVIATNDAARSKGIKAGALVSVAAKILGGGG-GGKPDMA 866 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG + + A + + + + Sbjct: 867 QGGGTDVTQIPHAFDAITAAIAQ 889 >gi|289615775|emb|CBI57516.1| unnamed protein product [Sordaria macrospora] Length = 961 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 312/965 (32%), Positives = 461/965 (47%), Gaps = 93/965 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQA 60 +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM FK IF G ++ + Sbjct: 11 QVRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKR 70 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + L Sbjct: 71 AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGL 130 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D +RLY+T ++ D EA LW + G+ D II DNFW M + GPCGPC Sbjct: 131 DPQRLYVTYFEGSPDLGLEPDLEAKNLWLE-VGVPEDHIIPGNMKDNFWEMGDQGPCGPC 189 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SEI +D+ + + +E+WN+VF+QF++Q + LP IDTGMG ER Sbjct: 190 SEIHYDKVGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGFER 249 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283 + + LQ+KT+NY D+F L ++V G +RVI DH+R S Sbjct: 250 LVSALQDKTSNYATDIFTPLFAKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRLLS 309 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341 F IADG P N GRGYV+RR++RR YAR E +LPAL +MG +PEL+ Sbjct: 310 FAIADGAAPNNVGRGYVVRRVLRRGARYARKYFNAEIGTFFSRILPALVEQMGEQFPELV 369 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+E L E+ F TLDRG + L+ + L+G ++LYDT G P D Sbjct: 370 KKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGKKKLSGADVWRLYDTFGFPED 429 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + + RGL + R +AR S + +F Sbjct: 430 LTKLMAEERGLTIDEAEVNEA-----REKAREASKAVKESVQ--------------EFAK 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFD 516 ++ + ++ L V+ I E ++ + + ++ D Sbjct: 471 LNVHQIAELETSLNIPRPTSDAKFLKGDAKGKVQLIFNGKEFLKSSKDLPPKTPLGLLLD 530 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ DTG I DG+ ++ G VH+ +E G L + D Sbjct: 531 NTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEFGGYIVHNGFIEYGELTEGDEVTCEYD 590 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R+ + NH+ TH+L+H+L +LG ++Q GS + D LRFD +H I ++K IE Sbjct: 591 ELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDRLRFDFSHKAAIPLEDIKKIE 650 Query: 637 DNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 D N I QNL ++ ++ G A+ G Y + VRVVS+ Sbjct: 651 DLSNHYIRQNLKAYSKEVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNPKNP 710 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--------------- 729 + S CGGTHV +TG I L IV ES I GIRRI A TG+ Sbjct: 711 EWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQRDAQVFSDK 770 Query: 730 ----RARSHLMGQDEKLKSLASFLK------VSQGNVVGRVEEIW----EEYRKLQLIHA 775 A S+ + ++K+ A L +++ + R +I +E +K Q + Sbjct: 771 LEHINALSYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQKAES 830 Query: 776 KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K L S + D F+ H+ ++K + V+ + K + + + SK+ Sbjct: 831 KTALDTVASHFSKDENKDSKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGSKDD 890 Query: 835 KASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 + + V L A + V+GG GG P Q G K ++A+ Sbjct: 891 QVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGKEPSR-QGAGAEPEKLEEAVKKAE 949 Query: 894 SFLKK 898 +L + Sbjct: 950 EWLSE 954 >gi|113195586|ref|NP_001037775.1| alanyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio] gi|94734005|emb|CAK04586.1| alanyl-tRNA synthetase [Danio rerio] Length = 991 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 311/973 (31%), Positives = 474/973 (48%), Gaps = 96/973 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 31 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 91 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWNLVF+QF ++++ LPK SIDTGMG Sbjct: 210 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 268 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ G + + +RV+ DH R Sbjct: 269 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 328 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A+PE Sbjct: 329 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 388 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG+ + GD A+ LYDT+G PLD Sbjct: 389 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGFPLD 448 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I RG+ G+D+++F + ++ A+ S G GSG + I + Sbjct: 449 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 495 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D LR D K V A+ ++ V+E ++GQ+ V+ Sbjct: 496 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 554 Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ D G + R++ T + G +V H G L+ L Sbjct: 555 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 614 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E Sbjct: 615 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 673 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682 ++ E+ +IA V G A+ Y D VRVVS+ Sbjct: 674 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 733 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ D Sbjct: 734 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKAD 793 Query: 740 EK---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVED 785 L +LA +K Q + E + ++RK ++ + + L+ ++D Sbjct: 794 ALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDD 853 Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L ADV + + S +K L + L+ M Sbjct: 854 LDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAM 913 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + + K L V +D+ +R A + + +L G GGG+ AQ+ G N Sbjct: 914 LFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQC 972 Query: 885 ADQAIAGVASFLK 897 +A+ + F + Sbjct: 973 IQEALQLASEFAR 985 >gi|118763839|gb|AAI28795.1| Aars protein [Danio rerio] Length = 966 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 311/973 (31%), Positives = 473/973 (48%), Gaps = 96/973 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWNLVF+QF ++++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ G + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A+PE Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G PLD Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I RG+ G+D+++F + ++ A+ S G GSG + I + Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D LR D K V A+ ++ V+E ++GQ+ V+ Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529 Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ D G + R++ T + G +V H G L+ L Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E Sbjct: 590 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682 ++ E+ +IA V G A+ Y D VRVVS+ Sbjct: 649 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ D Sbjct: 709 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKAD 768 Query: 740 EK---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVED 785 L +LA +K Q + E + ++RK ++ + + L+ ++D Sbjct: 769 ALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDD 828 Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L ADV + + S +K L + L+ M Sbjct: 829 LDRASKADVQKRVLEKTKEIIESNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAM 888 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + + K L V +D+ +R A + + +L G GGG+ AQ+ G N Sbjct: 889 LFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQC 947 Query: 885 ADQAIAGVASFLK 897 +A+ + F + Sbjct: 948 IQEALQLASEFAR 960 >gi|297626345|ref|YP_003688108.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922110|emb|CBL56678.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 895 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 316/924 (34%), Positives = 467/924 (50%), Gaps = 70/924 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF GH +PS+SL+ NDPTL+F N+GMVPFK G+ ++ Sbjct: 1 MKAAEIGRRFVDFFVSKGHTEVPSASLL-YNDPTLLFVNAGMVPFKPYLMGELPAPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D++ VG+T RH TFF+MLGNFSFG YFK+ AI+ AW+L+T Sbjct: 60 TSIQKCVRTL----DIEEVGKTTRHGTFFQMLGNFSFGDYFKKEAIEFAWELVTGPLAEG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA W + G+ + I DN+W M G Sbjct: 116 RLGFDPNMVWVTVLGPGFHPDYPEGDTEARDTWLSL-GVPPEHIQGRGLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221 P GPCSEI+ D+G G G + +R++EIWNLVF E +++ + Sbjct: 175 PGGPCSEIYIDRGPKY-GAEGGPEADEDRFLEIWNLVFETEELSTVRSKEDFDIAGPMKT 233 Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A ++Q N Y+ D +I+ + + G +Y + + V RV+ DH+ Sbjct: 234 RNIDTGAGLERIALLMQGVDNMYETDEVFPVIERAAAMAGKRYGADHTDDVRLRVVGDHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RSS L+ DG+ P NE RGYVLRR+MRR + RLLG + + LL M + YPE Sbjct: 294 RSSLMLMTDGVTPGNEARGYVLRRLMRRTIRSMRLLGVEKVSLTELLDVSRQCMHATYPE 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397 + I++ +E E F +TL+ G L D ++ L GD AF+L+DT+G P Sbjct: 354 IDDQWERIKDIADNESESFERTLNSGTQLFDMAVAEARAAGSNELGGDKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D +F +++Q++RA+A + + + G T F Sbjct: 414 IDLTLEMASEQGLH-VDETAFRTLMDQQKARAKADAKAKKGNLQDAESYRELRDRGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L V + V+ +V G +V+ +GQ EVV ++ Sbjct: 473 VGYSEL-----------------------TVPTRVRGLVADGHVVDHLRAGQLGEVVLEE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G D ++ DVQ+ G+ V H + G LR + +D Sbjct: 510 TPFYAEMGGQDADAGVLRSDAGEFEVIDVQRPVPGLVV-HTVRAGGELRPGDEVQAMVDA 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 +R+ HSATH++H AL ++G +Q GS P LRFD S +++A IE Sbjct: 569 VHRQGACQAHSATHIIHAALRELVGPTATQAGSYNKPGYLRFDFNSSHGLSAALKAEIEA 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I +L V M A GA A+ G KY D VRVV + GG S LC GT Sbjct: 629 RCNAAIRDDLEVSATQMPLAQAKGMGAMAMFGEKYPDIVRVVEM----GGPWSRELCAGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV +I +L ++ E S+ AG RR+EA+ A H+ + + L LKV + Sbjct: 685 HVLHASQIGMLNLLGEQSVGAGTRRVEALVSTDAFEHMAAERALVNQLTGTLKVQPDQLT 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSV 812 RV + EE + Q A+ K + + V+F S +VD+ L+++ Sbjct: 745 DRVGALIEELKVAQKQIAELKAAQLLAGAPQLVSDAKDMWGVSFASKRYHDVDAGALRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++ + S ++ LVG S K ++++ T DR NA L R A VLGG G G Sbjct: 805 AGQVRDQFGDRSAVVALVGGSAT-KPALVVATTRAARDRGLNAGALVREGAGVLGGNG-G 862 Query: 870 GRPHMAQSGGPNGNKADQAIAGVA 893 G+P +AQ GG + KAD+A+ V Sbjct: 863 GKPDLAQGGGTDAGKADEALRTVE 886 >gi|213404528|ref|XP_002173036.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] gi|212001083|gb|EEB06743.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] Length = 961 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 302/964 (31%), Positives = 458/964 (47%), Gaps = 92/964 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 + +R+TF+++F+++GH +PSSS+IP DPTL+F N+GM +K IF G P Sbjct: 11 ANKVRSTFIDYFKEHGHTFVPSSSVIPFEDPTLLFANAGMNQYKPIFLGTVDPSSSFAKL 70 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI LAW LLT+ F Sbjct: 71 KRACNSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIPLAWKLLTEVF 130 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L+ +LY+T + D EA +W + G+ +++I DNFW M E GPCG Sbjct: 131 KLNPDQLYVTYFGGHEESGLGPDLEAKNIWLE-MGIPPERVIPGNLKDNFWEMGEQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ +++ +EIWN+VFM+F ++ LP IDTGMG Sbjct: 190 PCSEIHYDRI-GGRSVPELVNQDDPNVLEIWNIVFMEFNREKDGSLRPLPNKHIDTGMGF 248 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRS 281 ER+ +V+Q K++NYD DLF L Q +++ G +RV+ DH+R+ Sbjct: 249 ERLVSVVQNKSSNYDTDLFAPLFQKIQELTGARPYEGRMGEDDVDGIDTAYRVVADHVRT 308 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYPE 339 +F I+DG +P NEGRGYVLRRI+RR Y R T L + +MG +PE Sbjct: 309 LTFAISDGGVPNNEGRGYVLRRILRRGARYVRKKFNTPIGDFFSRLALVVAEQMGEFFPE 368 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLP 397 + ++E L E+E F +TLDRG + + + K E +L G ++LY+T+G P Sbjct: 369 VRSKLEDVKEILDEEEESFSRTLDRGEKMFEQYAAAAQKTESKMLKGMDVWRLYETYGFP 428 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + GL ID+ FN A + +R + G T Sbjct: 429 VDLTHLMAEEAGLK-IDVEGFNAAQAHSKEISRRAAKAGGDSATMVTL------------ 475 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVV 514 D+ K + +++ VKA+ E+ +G+ + ++ Sbjct: 476 ---DIHALGALAKMPEVPKTDDHFKHESGTINATVKALYHPSGFQTSTEKFEAGENIGIL 532 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ DTG DG + G +H E G L ++ Sbjct: 533 LDRTNFYAEQGGQEYDTGRITIDGKLEFRVTNVQVYGGYVLHTGFCEYGSLNVGDEVICE 592 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D RR L NH+ TH+L+ AL +LG V Q GS ++P+ LRFD +H ++ EL+ Sbjct: 593 YDELRRRPLMNNHTVTHILNFALREVLGEGVDQRGSLVSPEKLRFDFSHKAALSIKELER 652 Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 +E+ N IA+NL V + +G A+ G Y D VRVV V Sbjct: 653 VENICNQKIAENLRVYAKELPLAISKEIAGLRAVFGEVYPDPVRVVCVGADIDEIIKDPK 712 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQD 739 E +S CGGTH+ TGEI I+ ES I GIRRI A+T A D Sbjct: 713 NEQWRQYSIEFCGGTHLPKTGEIKDFVILEESGIAKGIRRIVAVTAADANQVCRIANEFD 772 Query: 740 EKLKSLASFLKVSQGNVVGRV--------------------------EEIWEEYRKLQLI 773 ++L LA+ + ++ ++ ++ + Sbjct: 773 QRLDRLAAMPHGPEKEAEIKLVTVDLSQLSVSALRKHAMKEKFTKITKQFQDQVKAANAK 832 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K ++ + H + F+S + + K L + +K + + L+ + Sbjct: 833 EQKDAVKAVADYFEEHPESKF-FVSKLNVSPNPKVLNFAISYAKKNLAGKSLYLLASNGA 891 Query: 834 --KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K + +V+++ L + A + ++ + V+ GG GG+ Q G N +K DQAI Sbjct: 892 QPDKVAHACLVSQEALPKVTAQEWSQKVSHVV-GGRCGGKKDSCQGVGTNADKIDQAIEE 950 Query: 892 VASF 895 F Sbjct: 951 AIEF 954 >gi|226356938|ref|YP_002786678.1| alanyl-tRNA synthetase [Deinococcus deserti VCD115] gi|226318928|gb|ACO46924.1| putative alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus deserti VCD115] Length = 891 Score = 698 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 329/921 (35%), Positives = 486/921 (52%), Gaps = 67/921 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58 S IR FL+FF+ GH LPS S I DPT +FT +GM PFK+ F G + Sbjct: 6 TTSQIREKFLQFFESKGHLRLPSHSTIAP-DPTTLFTVAGMQPFKDQFMGAPAVFDGVAN 64 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + VTT QKCVR D++NVGRT RH T FEM+GNFSFG YFK AI AWD LT + Sbjct: 65 KRVTTAQKCVRV----PDIENVGRTRRHLTLFEMMGNFSFGDYFKRDAILWAWDFLTGPE 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171 +D ++Y+T+Y +D+EAF W + GL A I R ++NFW GPCGP Sbjct: 121 WMGMDPDKMYVTIYKDDDEAFGYWTQEVGLDASHIHRFDADENFWPANAPLEGPNGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQN---KQER--FILPKMS 223 CSEI++D+G E R++E+WNLVF Q+++Q+ LP + Sbjct: 181 CSEIYYDRGSNYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDPAEDGTPVLKDLPFKN 240 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283 IDTGMGLER+A+V+Q+ + Y D+F+ ++ +++G YEG V+HRV+ +H+RS Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFRPIVDKVAELSGKPYEGEISVSHRVVAEHMRSVC 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 ++ADG +N GRGY LR+I+RRA +A LLG EP + + P + MG AYPEL Sbjct: 301 MILADGTALSNTGRGYTLRKILRRASRHAYLLGMREPALYQIAPVVAAGMGDAYPELRTE 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + +E +R+E+ERF KTL+ G+ L +LS + + L+G+ AF LYDT+G PLD+ ++ Sbjct: 361 QGRVEAAIRAEEERFLKTLEGGIQRLGSLLSGMPQGGTLSGEEAFVLYDTYGFPLDLTKE 420 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I G +D + ++LE ++ ARA S G E AT+F+G+D L Sbjct: 421 IAEEYG-ISVDEARYAESLENAQNIARAGS-KYGKSELFGGNQEALEGLSATEFVGFDHL 478 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 V A+V GE + +G + VV +TPFY E Sbjct: 479 E-----------------------AEGQVLALVGAGERLSHLSAGSEATVVLSRTPFYGE 515 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GG++GDTG +G + D +K G+F+H +VE+G L +++ + + + + Sbjct: 516 GGGEVGDTGRLEWEGGAGMVRDTRKTPAGVFLHDVLVEQGELTEGVTVRGVVGPERQ-AI 574 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 +H+ATHLLH AL +LGS V Q GS + D LRFD +H +++ EL +E V+ I Sbjct: 575 QRHHTATHLLHAALRAVLGSGVRQAGSLVAADRLRFDFSHGAALSAEELSRVETLVSRWI 634 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG----VHSSALCGGTHV 699 + N PV + M +A A+GA AL G KY ++VRVVSVE + V S LCGG HV Sbjct: 635 SANFPVTWQEMPIAEAKAAGATALFGEKYGEKVRVVSVEGDVEYGGQPVSSKELCGGAHV 694 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 TG+I ++S+ ++ AG+RRIEA+ G+ A S + + +A+ L S + R Sbjct: 695 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATSWVRERLNGTARVAALLNTSPDGLEAR 754 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVED--------LSCHKIADVNFMSHIISEVDSKELKS 811 V + + + + A K QL ++ + +S ++ EL+ Sbjct: 755 VTGLQAQLKAAEKEVAAVKRQLAQAQMGSSSGGGAQTRELGGFRVAALKLSGIEGNELRG 814 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D L + + +++L K V+ + + +A L A GG G GGR Sbjct: 815 AADKLLDQSGADLVVLAS----DKGLVVKASKDAVTRGAHAGQLVGKLAAAGGGKG-GGR 869 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 P MAQ+G + A A+ Sbjct: 870 PDMAQAGITDPVAALNALDTA 890 >gi|205830104|sp|A8LCW4|SYA_FRASN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 880 Score = 698 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 326/913 (35%), Positives = 481/913 (52%), Gaps = 56/913 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G K + Sbjct: 1 MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLKAPWNRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQKCVR D+DNVGRT RH +FF+M GNFSFG YFK AI A++L+ + + Sbjct: 60 TSVQKCVRTV----DIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFN 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+ TVY +D+EA +W+ + L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 116 PDDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 173 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236 G G + +RY+EIWNLVFMQF + E LP +IDTGMGLERMAT+ Sbjct: 174 AY-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ A+ ++TG +Y + ++ V RV+ DH R+++ LI+DG+ P+N Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSN 292 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M L + MG YPEL+ I +E Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAE 352 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL G L D ++ L+G+ AF+L+DT+G P+D+ D+ GL Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT- 411 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR A+A G + + + G T F GY L Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 G S + IV G+ + A G++V ++ D TPFYAE+GGQ Sbjct: 464 ---------------GRESGIVGIVGIGDGDSLTAAGEGEEVGILLDATPFYAESGGQEA 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G DG ++ DVQ+ + +H V G LR + +D + RR +S +H+A Sbjct: 509 DLGRIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H A LG +Q GS +P LRFD + + L +ED VN+I ++L V Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + ++E+A GA AL G KY DRVRVV D G ++ LCGGTHV+S+ ++ + Sbjct: 629 RWYVTSQEEARRLGAMALFGEKYGDRVRVV-----DVGDYARELCGGTHVASSAQLGAIK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++SESSI AG RR+EA+ G A L + + L+S LK + RV +I R Sbjct: 684 LLSESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADIVGRLRD 743 Query: 770 LQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823 + + + Q + V ++ + + +++ + ++ ++ Sbjct: 744 AEKELERLRAQAVLAGSAALAAGAEDVGGVALVTAQVPAGTPADDVRLLALDVRGRLAGR 803 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ + A V+ A DL R S LGG G GG+P +AQ G + + Sbjct: 804 PAVVAVVEAAGAAVVVATDETARTRGLRAGDLVRHSWAALGGKG-GGKPDVAQGGRGDAD 862 Query: 884 KADQAIAGVASFL 896 + A + + Sbjct: 863 MIPKVFARLRELV 875 >gi|94734006|emb|CAK04587.1| alanyl-tRNA synthetase [Danio rerio] Length = 966 Score = 698 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 311/973 (31%), Positives = 474/973 (48%), Gaps = 96/973 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWNLVF+QF ++++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ G + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A+PE Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG+ + GD A+ LYDT+G PLD Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGFPLD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I RG+ G+D+++F + ++ A+ S G GSG + I + Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D LR D K V A+ ++ V+E ++GQ+ V+ Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529 Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ D G + R++ T + G +V H G L+ L Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E Sbjct: 590 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682 ++ E+ +IA V G A+ Y D VRVVS+ Sbjct: 649 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ D Sbjct: 709 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKAD 768 Query: 740 EK---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVED 785 L +LA +K Q + E + ++RK ++ + + L+ ++D Sbjct: 769 ALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDD 828 Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L ADV + + S +K L + L+ M Sbjct: 829 LDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAM 888 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + + K L V +D+ +R A + + +L G GGG+ AQ+ G N Sbjct: 889 LFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQC 947 Query: 885 ADQAIAGVASFLK 897 +A+ + F + Sbjct: 948 IQEALQLASEFAR 960 >gi|158313530|ref|YP_001506038.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec] gi|158108935|gb|ABW11132.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec] Length = 892 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 329/920 (35%), Positives = 484/920 (52%), Gaps = 70/920 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G K + Sbjct: 13 MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLKAPWNRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQKCVR D+DNVGRT RH +FF+M GNFSFG YFK AI A++L+ + + Sbjct: 72 TSVQKCVRTV----DIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFN 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L+ TVY +D+EA +W+ + L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 128 PDDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 185 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236 G G + +RY+EIWNLVFMQF + E LP +IDTGMGLERMAT+ Sbjct: 186 AY-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 244 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ A+ ++TG +Y + ++ V RV+ DH R+++ LI+DG+ P+N Sbjct: 245 LQGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M L + MG YPEL+ I +E Sbjct: 305 EGRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL G L D ++ L+G+ AF+L+DT+G P+D+ D+ GL Sbjct: 365 ETAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT- 423 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR A+A G + + + G T F GY L Sbjct: 424 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 475 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 G S + IV G+ + A G++V ++ D TPFYAE+GGQ Sbjct: 476 ---------------GRESGIVGIVGIGDGDSLTAAGEGEEVGILLDATPFYAESGGQEA 520 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G DG ++ DVQ+ + +H V G LR + +D + RR +S +H+A Sbjct: 521 DLGRIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTA 580 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H A LG +Q GS +P LRFD + + L +ED VN+I ++L V Sbjct: 581 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEV 640 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + ++E+A GA AL G KY DRVRVV D G ++ LCGGTHV+S+ ++ + Sbjct: 641 RWYVTSQEEARRLGAMALFGEKYGDRVRVV-----DVGDYARELCGGTHVASSAQLGAIK 695 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++SESSI AG RR+EA+ G A L + + L+S LK + RV +I R Sbjct: 696 LLSESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADIVGRLRD 755 Query: 770 LQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823 + + + Q + V ++ + + +++ + ++ + Sbjct: 756 AEKELERLRAQAVLAGSAALAAGAEDVGGVALVTAQVPAGTPADDVRLLALDVRGR---- 811 Query: 824 IIMLVG-----ISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 L G E + ++V T++ A DL R S LGG G GG+P +AQ Sbjct: 812 ---LAGRPAVVAVVEAAGAAVVVATDETARTRGLRAGDLVRHSWAALGGKG-GGKPDVAQ 867 Query: 877 SGGPNGNKADQAIAGVASFL 896 G + + + A + + Sbjct: 868 GGRGDADMIPKVFARLRELV 887 >gi|294654445|ref|XP_456501.2| DEHA2A03652p [Debaryomyces hansenii CBS767] gi|199428887|emb|CAG84453.2| DEHA2A03652p [Debaryomyces hansenii] Length = 1021 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 312/965 (32%), Positives = 478/965 (49%), Gaps = 94/965 (9%) Query: 4 VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S +R+TFL++F+ K H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 79 ASRVRSTFLDYFKVKQNHTFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFST 138 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLT+ Sbjct: 139 LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAISWSWELLTEV 198 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L+Q RLY+T + DE EA W G++ D I+ DNFW M + GPC Sbjct: 199 YKLEQDRLYVTYFGGDEKQGLQPDLEAKNFWLA-VGVAEDHILPGNLEDNFWEMGDQGPC 257 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WN+VFMQ+ ++ LP IDTG+G Sbjct: 258 GPCSEIHYDRI-GGRNASSLVNMDDPNVLEVWNIVFMQYNREPDSSLRSLPAKHIDTGLG 316 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ K++NYD D+F+ + ++TG++ +RVI DH+R Sbjct: 317 FERLVSILQNKSSNYDTDVFQPIFNKIREITGVRPYTGKFGSEDRDGIDTAYRVIADHVR 376 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F I DG +P NEGRGYVLRRI+RR Y R L+P + + +P Sbjct: 377 TLTFAITDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVPVVVEQNSEIFP 436 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396 E+++ + + E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+G Sbjct: 437 EILKNQQDLTEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 496 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID F +A EE R ++A + G + +L E G Sbjct: 497 PVDLTRLMAEEAGLK-IDEEGFEKAKEESREASKATNNKAGVSLIKLDVHALSELDG--- 552 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 D+ + + V AI V+ G + ++ Sbjct: 553 --------------NDKVPKTDDSFKYDIENIKANVVAIYNGSSFVDSISEAGSQAGILL 598 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+TPFYAE+GGQ DTG + DG+ + G +H + G L+ E ++ T Sbjct: 599 DKTPFYAESGGQEYDTGKLVIDGVAEFSVSNVQVYGGYVLHTGSLLEGSLKLEDEIIATY 658 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG +V Q GS + P+ LRFD +H + +T EL + Sbjct: 659 DELRRWPIRNNHTGTHVLNFALREVLGDNVDQKGSLVAPEKLRFDFSHKQGLTPDELLKV 718 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVE-----------Y 683 E ND I +N V + + DA G A+ G Y D VRVVS+ Sbjct: 719 ETISNDYIKENKQVYAKDIRLNDAKEIDGLRAVFGETYPDPVRVVSIGTSVEDLLKDPKN 778 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 + S LCGGTHV+ TG+I L I+ ES I GIRRI A+TG A + K Sbjct: 779 SEWHKVSIELCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGTEAHQVQKVASDFDK 838 Query: 744 SL---------------ASFLKVSQGNVVGRV--------------EEIWEEYRKLQLIH 774 L A L VS + V + I ++ + +Q Sbjct: 839 ELDHTMGLASGPIKETKAKELGVSLKKLSISVLDKRSLNDKFNKLDKSIKDQLKAVQKEE 898 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +K+ L++ L+ D +S + ++K + ++ L+K+ +S I L+ S Sbjct: 899 SKKVLEVVNTWLNAEDAKDY-LVSFVPISANAKAITEAINLLKKQHKSKSIYLITGS--D 955 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + V+++ + + +A +LA + +GG GG+ ++ Q G D+AI + Sbjct: 956 KVAHGCYVSDEAIAKGIDATNLATAVSSKVGGKA-GGKGNVVQGMGDKPQGIDEAINELK 1014 Query: 894 SFLKK 898 + Sbjct: 1015 KLFAE 1019 >gi|303321650|ref|XP_003070819.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides posadasii C735 delta SOWgp] gi|240110516|gb|EER28674.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides posadasii C735 delta SOWgp] Length = 1023 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 291/966 (30%), Positives = 465/966 (48%), Gaps = 96/966 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60 +R TFL+FF+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 78 KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 137 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L Sbjct: 138 AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 197 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T ++ D E LW G+ D I+ DNFW M + GPCGPC Sbjct: 198 EPDRLYVTYFEGNKDAGIEPDLETKDLWLS-VGVKEDHILSGNMKDNFWEMGDQGPCGPC 256 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SE+ +D+ + + +EIWN VF+Q+ ++++ LP +DTGMG ER Sbjct: 257 SEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 315 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283 + +VLQ+K +NYD D+F L A ++TG++ +RV+ DH+R+ + Sbjct: 316 LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRTLT 375 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341 F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ Sbjct: 376 FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 435 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399 + + + E L E+ F KTLDRG + L+G ++LYDT G P+D Sbjct: 436 KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 495 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + Q + RGL+ ++ R +A+ S G ++ + S+ + Sbjct: 496 LTQLMAEERGLSIDNVEFEEA-----RLKAKEASKGQAKAASDLLKLSVHDL-------- 542 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516 +++D+ + S + A+ E V+ G ++ ++ D Sbjct: 543 -------SKLEKDKVPKTNDDAKFGRGNILSQIVAVYHDKEFVDSTSGIPEGDQIGIILD 595 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +T FYAE GGQ DTG I DG + G H ++ G L S++ D Sbjct: 596 KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVFHTGFIKYGNLSVGDSVISEYD 655 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + NH+ TH+L+ AL +LG+ + Q GS + + LRFD +H ++ ++L+ IE Sbjct: 656 ELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKIE 715 Query: 637 DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 + + I QN V ++ + +G A+ G Y D VRVVSV Sbjct: 716 EKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKDP 775 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736 S CGGTHV TG+I L I+ E I GIRRI A+TG+ A Sbjct: 776 RWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGDR 835 Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHA 775 ++++ K + + L + V + +++ E + LQ Sbjct: 836 LNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQEI 895 Query: 776 KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 K L + D + + + + ++K + ++ + K++ I + E Sbjct: 896 KAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAEQ 955 Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + + V+ L +A + + + + ++ GG GG+ + G ++ D+AI Sbjct: 956 GRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEAA 1014 Query: 893 ASFLKK 898 +L++ Sbjct: 1015 TKYLEQ 1020 >gi|255003991|ref|ZP_05278792.1| alanyl-tRNA synthetase [Anaplasma marginale str. Virginia] Length = 879 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 372/909 (40%), Positives = 505/909 (55%), Gaps = 55/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L + Sbjct: 65 ASQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLSK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGEH 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GG PGS +G R+ E+WNLVFMQF + E LP IDTGMGLE A V+Q Sbjct: 185 VQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLE-TAAVVQGVC 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYD DLFK +I+ S+ V G NN + HRVI DH+R+++FLI++G+ P NEGR YVL Sbjct: 244 DNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYVL 300 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356 RRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE E Sbjct: 301 RRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEGE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F TL RG+ LL+ + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 361 GFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQE 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN+ + EQ+ A GL ++W L+ ++ T+F+GYD Sbjct: 420 GFNKGMGEQKGLASTGW-GLVKMLPHRLWEELQAQHKNTRFVGYDC-------------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V +I + G V+ SG+K ++ D +PFYAE+GGQ GD G G Sbjct: 465 ---------CSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSITG 515 Query: 537 DGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 + +KA + +H + G+ ++ ID R +L NHSA Sbjct: 516 VSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHSA 575 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 TH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N PV Sbjct: 576 THILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKPV 635 Query: 650 VTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 +T + E A+ GA AL G KY VRVVS+ S LCGGTHV TG+I Sbjct: 636 LTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGAF 689 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I G+RRIEAITGQ L + L ++ L V G V +E + +E Sbjct: 690 KIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEKL 749 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L+ ++ +S V + + M + + K + GI Sbjct: 750 ELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA- 807 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + + KA ++I V + A +L + A + G GGG +A+ + Sbjct: 808 IATAVDGKAVLIIGVGDTANKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQE 864 Query: 888 AIAGVASFL 896 A++ + + + Sbjct: 865 ALSTILNKV 873 >gi|261838564|gb|ACX98330.1| alanyl-tRNA synthetase [Helicobacter pylori 51] Length = 847 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 322/891 (36%), Positives = 479/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK++FTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDVFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYRVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNAFVGYETTECLAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+ V+ ++TPFYAE GG +GD G D + I Sbjct: 467 --------------DFKEITKANPNQEAWVLLEKTPFYAEGGGAIGDRGTLFKDNEEVAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL L +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSTLREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ + ++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + K A+ + Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALNLAKN 839 >gi|242012157|ref|XP_002426803.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212510999|gb|EEB14065.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis] Length = 983 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 297/971 (30%), Positives = 464/971 (47%), Gaps = 95/971 (9%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + +R TF++FF +K H+ + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 5 SSKEVRQTFIDFFIKKKQHQYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMA 64 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT Sbjct: 65 KWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTT 124 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + RLY+T + + D E K+W + G+ ++ DNFW M ETGP Sbjct: 125 VYHISPDRLYVTYFGGDSASGLEPDSECKKIWIDL-GVPESHVLPGNMKDNFWEMGETGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ +D+ +++ +EIWNLVF+QF ++ LPK ID GM Sbjct: 184 CGPCSELHYDRIGN-RNASHLVNQDDPDVLEIWNLVFIQFNRETDGSLKTLPKRHIDCGM 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 G ER+ +V+Q K +NYD D+F L A ++ TG + +RV+ DH Sbjct: 243 GFERLVSVIQNKRSNYDTDIFTPLFDAIQKGTGSPPYKGKVGAEDVDGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + +ADG P N GRGYVLRRI+RRA+ Y L L+ +C +G + Sbjct: 303 RTLTIALADGGRPDNVGRGYVLRRILRRAIRYGTEKLNTKPKFFSSLVKTVCDTLGDTFS 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I E + E+E+F KTL RG LL+ ++ +GK ++L GDVA++LYDT+G P+ Sbjct: 363 EIRRDPDTIMEIINEEEEQFLKTLSRGRNLLNRTIAKIGKSKVLPGDVAWRLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-------K 451 D+ Q + +GL+ R +A+ S G + I + K Sbjct: 423 DLTQLMAEEKGLSVDMTGYEEA-----RKQAQLLSQGKEGKVDDGIALDVHAITELQNLK 477 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 T + K + + AI + + V+ SG+K Sbjct: 478 IPPTD---------DSPKYNYKAKQQDKNAEYEFQKCEAKITAIRHKKKFVDSINSGEKC 528 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ+ D G I + ++ + + + +V H G+ + + Sbjct: 529 GILLDRTLFYAEQGGQIFDEGYMIKKNDENVEFSIYNVQVKAGYVLHFGTTEGVFKKGDT 588 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 +VL +D RR + NH+ TH+L+ AL +LGS Q GS + PD LRFD T+ +T Sbjct: 589 VVLHLDTARRRLVMNNHTGTHILNFALREVLGSGCEQKGSLVAPDRLRFDFTNKSAMTPD 648 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE------- 682 ++K+ ED+V +IA+N V + +G A+ Y D VR+VSV Sbjct: 649 QIKAAEDSVKRVIAKNCEVFAKNTPLAVAKTVNGVRAMFDEHYPDPVRIVSVGAAVEDLV 708 Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G + CGGTH+ +G + I SE +I GIRRI A+TG A L Sbjct: 709 ANPSSSLGMSVPAEFCGGTHLHRSGHVGDFVISSEEAIAKGIRRIVALTGPEASKALKKA 768 Query: 739 ---DEKLKSLASFLKVSQGN--VVGRVEEIWEE--------YRKLQLIHAKRKLQLNVED 785 + ++ + + S + ++ + ++ ++K +L +A + L+ ++D Sbjct: 769 AILENEVNEIKQKMNDSSAQKMIPKKIISLTDDISHAVIPYWKKEELRNALKVLKKQLDD 828 Query: 786 LS--------------CHKIADVN----FMSHIISEV-DSKELKSVMDALQKKIQSGIIM 826 KI + N F+ + ++K + + + ++ + M Sbjct: 829 KERANKAALAAGVVEQAKKIIEANLNKPFIVAEVKAFSNNKAVDTALKQVKALSPNTAAM 888 Query: 827 LVGISKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + K L V + +A D + +L G GGG+ AQ G N + Sbjct: 889 FFSVDPDANKIFYLASVPKSANSQGLSAGDWVNHVSPLLK-GKGGGKAESAQGSGSNFSA 947 Query: 885 ADQAIAGVASF 895 ++A+ F Sbjct: 948 LNEAMDAARKF 958 >gi|30694735|ref|NP_175439.2| ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] gi|21542451|sp|P36428|SYA_ARATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 1003 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P Sbjct: 64 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 124 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 183 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC+ Sbjct: 184 TDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 241 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG ER+ Sbjct: 242 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 300 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 +VLQ K +NYD D+F + ++ TG + + +RV+ DH+R+ SF Sbjct: 301 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 360 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P NEGR YVLRRI+RRA+ Y + L E L+ ++ MG + EL + Sbjct: 361 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 420 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I + ++ E+ F KTL +G+ + L+GD AF L+DT+G PLD+ Q Sbjct: 421 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 479 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + RGL +D+ FN+A+EE R R+R+ G D Sbjct: 480 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 521 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S K S +KAI +E + + V +V T FYAE Sbjct: 522 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 581 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ DTG G + +VQ + + + E G + ++ +DY+ R+ Sbjct: 582 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 641 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ IE VN Sbjct: 642 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 701 Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690 I L V ++ +A G A+ G Y D VRVVS+ + + S Sbjct: 702 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLS 761 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746 S CGGTH+++T E ++SE I GIRR+ A+T + A L + + Sbjct: 762 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 821 Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784 S LK ++ ++ + E RK Q A++ L+ +V+ Sbjct: 822 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 881 Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 F + +D+ ++ + + +K I++ KA V Sbjct: 882 TEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 941 Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V E D + + + L G G G+ +A G + ++ A+ +SF Sbjct: 942 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 997 >gi|225423779|ref|XP_002277341.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1002 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 312/959 (32%), Positives = 456/959 (47%), Gaps = 89/959 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 + +R TF+ FF+ H SS ++P NDPTL+F N+GM FK IF G P Sbjct: 60 ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 119 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + Sbjct: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 179 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L R+Y T + DE EA +W K L ++ DNFW M +TGPCG Sbjct: 180 KLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDTGPCG 237 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PC+EI FD+ + + IEIWNLVF+QF +++ LP +DTGMG Sbjct: 238 PCTEIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGF 296 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281 ER+ ++LQ K +NYD D+F + A +Q TG + + +RV+ DH+R+ Sbjct: 297 ERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVADHIRT 356 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 SF IADG P NEGR YVLRRI+RRA+ Y L E + + MG +PEL Sbjct: 357 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDVFPEL 416 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 Q ++ I E + E+ FGKTL +G+ + +ILNG AF L+DT+G PLD+ Sbjct: 417 KQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQ-GKILNGQDAFVLWDTYGFPLDL 475 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL +D+ FN AL+E R R+R+ GT Sbjct: 476 TQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGTIVM----------------- 517 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D S K S++KAI E +E A +G +V +V + T F Sbjct: 518 DADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLETTSF 577 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-FVHHAIVERGILRTEMSLVLTIDYQN 579 YAE GGQ+ DTG G Q+ +VQ I + G ++ +DY Sbjct: 578 YAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGDKVICKVDYDR 637 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KP+ L+ IE V Sbjct: 638 RKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIESIV 697 Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGG 687 N+ I L V ++ + DA + +G A+ G Y D VRVVS+ E Sbjct: 698 NEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNEKWL 757 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S+ LCGGTH+S+T E ++SE I GIRRI A+T A + + + Sbjct: 758 SISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQEVDD 817 Query: 748 FLK------------------------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 K + ++ ++ + ++ RK Q A+ +Q V Sbjct: 818 ASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKKFAEENIQKAV 877 Query: 784 ED----LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + F + +D+ ++ + + ++ +++ KA V Sbjct: 878 KAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFSTDETTNKAVV 937 Query: 839 LIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + D + + + L G G G+ +AQ G + + +A+ +F Sbjct: 938 YAGVPQKGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVKEAMDVAENF 996 >gi|189501991|ref|YP_001957708.1| alanyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2] gi|189497432|gb|ACE05979.1| hypothetical protein Aasi_0578 [Candidatus Amoebophilus asiaticus 5a2] Length = 879 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 314/923 (34%), Positives = 481/923 (52%), Gaps = 72/923 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S+IR F++FF++ H + ++ ++ DPTL+FTN+GM FK+ F Q++ YQ Sbjct: 1 MLCSSNIRQKFVDFFKQKDHHHVKAAPIVNKEDPTLLFTNAGMNQFKDFFLNQQEAPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q C+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + L Sbjct: 61 AISTQPCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGEYFKEEAIACAWELLTEVYKL 120 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 Q RLY+TV+ DE E+ W+K +S D+I+ DNFW M +TGPCGPC Sbjct: 121 PQERLYVTVFQGDEEESLELDQESLNTWEKY--ISRDRILYGNKKDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D G + + IEIWNLVF+Q+ + + LP +DTGM Sbjct: 179 SEIHVDIRTEEEIQQQAGKELVNTGHPQVIEIWNLVFIQYNRLASGQLMELPAKHVDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286 G ER+ VLQ K++ YD D+F LI +++ Y +N + RV+ DH+R+ +F I Sbjct: 239 GFERLTMVLQGKSSTYDTDIFVPLIHNIMRLSHKTYGKDNKVDIAMRVVADHIRAITFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ Y LG+ P M L+ L + + YP++ Q + Sbjct: 299 ADGQLPSNTQAGYVVRRILRRAVRYGYTNLGFETPFMYQLVSILAQQFKNVYPQIKQQQS 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F KTL GL L+ + ++ ++++G AF+LYDT+G P D+ + Sbjct: 359 YIEQVIKSEEESFFKTLAVGLHRLEHISETLNINGQQVIDGPTAFELYDTYGFPPDLTRL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I +GL +D F +AL+ QR R++ E+ + + K + FIGYD L Sbjct: 419 IAQEKGLE-VDEEGFQKALQNQRIRSQQA------AVLEQGDWHIVVKDVDSVFIGYDQL 471 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + R +I Q+GE + ++V DQTPFY E Sbjct: 472 ELIAKVIQYR--------------------SIYQKGEEI--------YQIVLDQTPFYPE 503 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I + + D +K+ E I ++ +D + R + Sbjct: 504 GGGQVGDTGTLIVGEQIIAVFDTKKEYERIIH---YTHELPHDLHATVQAVVDVKKRNLI 560 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLLH AL +LGSH+ Q GS + LRFD H ++ +++ IE VN I Sbjct: 561 ASNHSATHLLHAALRQVLGSHIEQKGSLVNEKLLRFDFPHYTKVSPEQIREIEHIVNQKI 620 Query: 644 AQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N+ + R M EDA + G AL G KY + VRV++ + S LCGGTH S+T Sbjct: 621 RANINLHEVRSMLLEDAKSMGVTALFGEKYGEYVRVITFDPY----FSKELCGGTHASAT 676 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G++ I +E+ I AG RRIEAIT A + ++ Q L LK ++V + Sbjct: 677 GKLGFFKITAETGIAAGTRRIEAITADAAENFIIEQLSILNQATEALK-KPNDLVKSIYH 735 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE L+ + Q + ++ ++ + + + + LK V + + Sbjct: 736 LLEEKANLEKKILSYQAQEVRSVIDNLYQHIKQVQEIQVLIEEVKVPNVEALKQVALSFR 795 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875 + L I +++ + + ++E+L+ + NA + + A ++ GGG GG+P A Sbjct: 796 TNKGPFFLTLTSI-IDQQPHIALFISEELIHKTQMNANIIIKELATLIQGGG-GGQPFFA 853 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 + G + + +Q + L+K Sbjct: 854 TAKGNDASGINQVLVTARHILEK 876 >gi|328874134|gb|EGG22500.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum] Length = 961 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 292/981 (29%), Positives = 458/981 (46%), Gaps = 106/981 (10%) Query: 1 MSNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56 M++V+ IR TF++FF + H +PSSS+IP +DPTL+F N+GM FK IF GQ P Sbjct: 1 MTSVNEIRKTFIDFFSEKCQHTFVPSSSVIPHDDPTLLFANAGMNQFKPIFLGQADPRSE 60 Query: 57 --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LL Sbjct: 61 QAKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWELL 120 Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 T + LD+ RLY + + + D EA LW + L A++++ +NFW M +T Sbjct: 121 TVVYKLDKERLYASYFGGDAAKGLEADTEARDLWLQF--LPAERVLPFGMKENFWEMGDT 178 Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCGPCSEI FD+ E G + + IEIWN VF+Q+ ++ + LP +DT Sbjct: 179 GPCGPCSEIHFDKVEGRKGAAALVNADDPTLIEIWNNVFIQYNREADKSLRPLPNKHVDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIV 276 GMGLER+ +++Q NYD D+F + ++VTG + +RVI Sbjct: 239 GMGLERLTSIIQNVGTNYDTDIFMPIFAEIQKVTGYPHPYGGKVGSDDPEQVDMAYRVIA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH+R+ SF IADG +P++EGRG VLRRI+RRA+ Y + L L+ + G Sbjct: 299 DHIRTLSFSIADGAVPSSEGRGQVLRRILRRAVRYGKQKLNAPSGFFAKLVDIVVQNFGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDT 393 +PEL I L E++ F + LDRG+V D ++ + + ++ A+ LY + Sbjct: 359 FFPELRNRPQHIVSVLEREEKMFARALDRGIVEFDRMVDKVKQQGSKVFPASNAWYLYSS 418 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 G P+D+ + ++ +GL +D+ + + +E R R + Sbjct: 419 FGFPIDLTKLMVDEKGLE-LDMDGYQKLADEDAERGRLRQRSKKTEMNM----------- 466 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK--- 510 ++ D + ++VKAI V S Sbjct: 467 --------QAEPISILQGDGVKPTIDSHKYEQKEIETVVKAIYDGKVFVNSLESTDTTRN 518 Query: 511 --VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGI 564 +V + T FY E GGQ+ D G + I +V + + + + Sbjct: 519 TVYGIVLESTNFYPEQGGQIYDIGNINSVVDQTTIFNVSDCKVFGGYVVHIGYITADAAA 578 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 ++ + LT+DY R + NH++TH+++ AL +LG +V Q GS + LRFD ++ Sbjct: 579 IKVGDKVELTVDYTRRSPIMSNHTSTHMINFALRNVLGDNVEQRGSLVDDSKLRFDFSND 638 Query: 625 KPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE- 682 + +T E+ ++ VND+IA+ LP + +G A+ G Y D VRVVSV Sbjct: 639 RGMTRQEIIKVDQIVNDLIAKELPVSCKEVDLARAKTINGLRAVFGEVYPDPVRVVSVGK 698 Query: 683 ----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 + +S CGGTH++++ + I SE ++ AGIRR+ A+TG A Sbjct: 699 SVDELLANPTNPEWTQYSIEFCGGTHINNSKDAEYFAITSEEALAAGIRRVVAVTGSDAT 758 Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-------------- 778 + K + + + + + Q + K Sbjct: 759 VVFENNKKLQARFQEATKFTGKELKDAIPTLTALLNEHQGKISASKKFELVEILSSIQEL 818 Query: 779 LQLNVEDLSCHKIADVNFMSHIISE--VDSKE---------------LKSVMDALQKKIQ 821 + ++ + I + + IS V+SK + + ++QKK Sbjct: 819 AKKQYKEEEANLIKEAQVLVDQISNQLVESKSPIYVGTINAGLSNTLMSDSIKSIQKKCP 878 Query: 822 SGIIMLVGISKE-KKASVLIVVTE---DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++L+ +E K V+ +V + A D + LGG G GG+P +AQ Sbjct: 879 DTSVLLISKDEEKGKICVISIVPKGSTAETKGLKANDWVVKVSAALGGKG-GGKPDVAQG 937 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + K D+A+ SF +K Sbjct: 938 AGTDIAKIDEALEFAKSFAQK 958 >gi|297380421|gb|ADI35308.1| alanyl-tRNA synthetase [Helicobacter pylori v225d] Length = 847 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 323/891 (36%), Positives = 480/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G+ +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ S Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECSAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+V V+ ++TPFYAE GG +GD G D + Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDDEEAAM 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNTQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + + ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENELITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839 >gi|296231556|ref|XP_002761188.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic [Callithrix jacchus] Length = 968 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 315/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F+EFF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIEFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLEDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKILSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-LVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAQG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + V A+ ++ VEE +GQ+ VV D+T Sbjct: 478 LEVTDDSPK----YNYHSDSSGNYVFENTVATVLALRREKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSNEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVV-----------SVEY 683 E+ N++I PV T+ G A+ Y D VRVV Sbjct: 653 EEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSVGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKT 772 Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 SL+ + +K +V + ++ E +++K +L + L+ ++DL Sbjct: 773 SLSLMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDELRETLKSLKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ADV + + S +K L + + ML + Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892 Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + L V ++ +R A + + + L G GGG+ AQ+ G N +A Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951 Query: 889 IAGVASFLK 897 + SF + Sbjct: 952 LQLATSFAQ 960 >gi|317013025|gb|ADU83633.1| alanyl-tRNA synthetase [Helicobacter pylori Lithuania75] Length = 847 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 323/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQVLLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFVPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K + + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKETVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L+HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFENCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECPAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI V+ + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 MDLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839 >gi|198437569|ref|XP_002125465.1| PREDICTED: similar to alanyl-tRNA synthetase [Ciona intestinalis] Length = 967 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 309/978 (31%), Positives = 453/978 (46%), Gaps = 104/978 (10%) Query: 3 NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 N +R FL FFQ+ H + SSS IP +DPTL+F N+GM FK+IF G P Sbjct: 6 NSKQLRQMFLSFFQEKYAHTYIHSSSTIPLDDPTLLFANAGMNQFKSIFLGTISPADPLS 65 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLG +SFG YFK+ AI AW+LLT+ Sbjct: 66 KCKRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGCWSFGDYFKKDAINWAWELLTE 125 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + RLY T ++ D E LW + L AD I+ DNFW M + GP Sbjct: 126 VLKIPKDRLYATYFEGSEEYNVPVDTEVQNLWLQ--HLPADHILPGNMKDNFWEMGDVGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI FD+ + + +E+WNLVFMQF ++ + +L K +DTGM Sbjct: 184 CGPCTEIHFDRI-GGRNAAHLVNMDDPEVLEVWNLVFMQFNREKDGKLKLLAKQHVDTGM 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQAS---------EQVTGMKYEGNNIVNHRVIVDHL 279 GLER+ +V+Q K +NYD D+F L +A + G + +RV+ DH+ Sbjct: 243 GLERLVSVIQGKLSNYDTDMFTPLFKAIQLGTGAREYQGKVGKDDVDGVDMAYRVLADHI 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RRA +A L L+ + +G A+P Sbjct: 303 RTLTIALSDGGRPDNVGRGYVLRRILRRATRFAVEKLNAKPRFFSSLVHVVVDILGEAFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397 E+I+ ++ + + E+E+F KTL+RG +L+ + L D ++ G+ A+ LYDT+G P Sbjct: 363 EIIRDPQMVIDIIDEEEEQFLKTLNRGRKILNQKIKSLDADAKVFPGETAWLLYDTYGFP 422 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL--KEKYGAT 455 D+ + + GL +D SF + +++AR S G + I + Sbjct: 423 FDLTEIMAEESGLT-VDCESFEK----AKAQARITSKGFAQDVADTICLDVHMLTDLKEK 477 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +F + + +VKAI+Q V SG + ++ Sbjct: 478 KF-------PPTDDSFKYQYSSNDNGEYSFPACTGVVKAILQNKTFVTSVSSGAECGILL 530 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQL D G + T + +G +V H G L S+ L Sbjct: 531 DKTCFYAEQGGQLFDLGYFKKQEDEFTEFTVKNCQVQGGYVLHVGTVAGTLEVGDSVELF 590 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID Q R+ L NHS TH+L+ L +LG Q GS + P+ LRFD T K +TS ++K Sbjct: 591 IDEQRRQSLMKNHSCTHILNFGLRCVLG-EADQRGSLVAPNRLRFDFTAKKAMTSQQVKE 649 Query: 635 IEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 ED N I+ ++ + + + + G A+ Y D VRV+SV Sbjct: 650 TEDVCNQIVNKDEVIYAKPVPLDQAKAIHGLRAIFDETYPDPVRVLSVGVSVDSLVADPN 709 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 ++ S LCGGTH+ +G I+SE +I G+RRI A+TGQ A + K Sbjct: 710 FDAAMNTSVELCGGTHLLRSGHADKFIIISEEAISKGVRRIVAVTGQEALKA----ERKA 765 Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---------------------------HA 775 LA + + V + E Y+ Sbjct: 766 NLLAKSFETIKSEVEKGLVNNKENYKTFSKKCTDFIELVSQASISQWRREEMRGFASSLK 825 Query: 776 KR-------------KLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQ 821 K+ KL L S + + F+ + ++K L + + + Sbjct: 826 KKVDDVDRVMKENATKLALAQTKESIQQDPNATFVVTELKTNGNAKSLNEALKIYKSESP 885 Query: 822 SGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +ML I KE K L V D+ A + A L G GGG+ AQ+ G Sbjct: 886 DTSVMLFSIDKEANKIVCLSQVPASANDKGLTANGWVQSIATTLN-GKGGGKSTSAQAVG 944 Query: 880 PNGNKADQAIAGVASFLK 897 N + ++AI F K Sbjct: 945 RNPDGLNEAIQLAKEFAK 962 >gi|15645855|ref|NP_208033.1| alanyl-tRNA synthetase [Helicobacter pylori 26695] gi|3024653|sp|P56452|SYA_HELPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2314404|gb|AAD08285.1| alanyl-tRNA synthetase (alaS) [Helicobacter pylori 26695] Length = 847 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 325/892 (36%), Positives = 484/892 (54%), Gaps = 57/892 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+E F +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVVKECFEEEEHFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G D+ F ++ Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGACA-DMQGFELCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTE------------------- 455 Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S+ V + + +A Q+V V+ ++TPFYAE GG +GD G D + Sbjct: 456 ----CSAKVLGFFDSDFKEITDANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNGEVA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 I K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 512 IVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RFEIAKHHSATHLLQSALREVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RR Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 736 SMDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 792 KNAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839 >gi|210135400|ref|YP_002301839.1| alanyl-tRNA synthetase [Helicobacter pylori P12] gi|210133368|gb|ACJ08359.1| alanyl-tRNA synthetase [Helicobacter pylori P12] Length = 847 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 324/891 (36%), Positives = 483/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG + Sbjct: 2 DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECPAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G I Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKGNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H+K + EL+ +ED+VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDSVNAQIFKHLNSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839 >gi|317009923|gb|ADU80503.1| alanyl-tRNA synthetase [Helicobacter pylori India7] Length = 847 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 326/891 (36%), Positives = 483/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FFQ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ +T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISGLTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSHTHAYLKESKEMVVKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL K++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLKHLNKNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F+GY+ + Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECTTKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+V V+ ++TPFYAE GG +GD G D I Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ + ++LK+ + LK + +V+ + ++ E + Q + Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKTLLKNN--DVIAGINKLKESVKNSQKVPVSM------ 737 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI V+ + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 738 -DLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 793 NAP---IKANMWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839 >gi|315587131|gb|ADU41512.1| alanine--tRNA ligase [Helicobacter pylori 35A] Length = 847 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 325/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + S L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F GY+ S Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECSAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ +L+ ++ + + +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKK-VLKKGDQVIAQVSDER-LEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNTQIFKHLNSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ + LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APIS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + K A++ + Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839 >gi|227495468|ref|ZP_03925784.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436] gi|226831015|gb|EEH63398.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436] Length = 895 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 307/928 (33%), Positives = 480/928 (51%), Gaps = 67/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I + E+FQ+NGHE+ PS L+ DP+++FT +GMVPF G E + Sbjct: 1 MRTAEIAHRWKEYFQRNGHEIRPSVPLVSP-DPSILFTIAGMVPFIPYIIGTEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL-----TK 116 +VQKC+R ND++NVGRT RH TFF+M GNFSFG YFKE AI AW+LL T Sbjct: 60 ASVQKCLRT----NDIENVGRTTRHGTFFQMNGNFSFGDYFKEGAIDFAWELLTGSQETG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T+++ED E++ + + GL I+R+ ++NFW + GP GPC+E Sbjct: 116 HYGLDGDRLWVTLWEEDAESYDVLTRKIGLDPKHIVRLPRHENFWDTGQPGPAGPCAEWH 175 Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228 +D+G G + + G+RY+EIWNLVF Q+ + + P +IDTG Sbjct: 176 YDRGPSYGPEAVGGNVDPGGDRYLEIWNLVFDQYLR-GEGSGKDYPLLGELDAKAIDTGA 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284 GLER+A V+Q K N Y+ID + +I A+E ++G Y + + V R++ DH+RSS Sbjct: 235 GLERLAFVMQNKPNMYEIDEVRPVISAAEMMSGRTYLGGGDPEDDVRMRIVADHIRSSMM 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG++P N+GRGYVLRR++RRA+ RLLG + L+P M ++YP+L Sbjct: 295 LINDGVVPGNDGRGYVLRRLIRRAVRSMRLLGVDTATLPTLMPVSRDAMKASYPDLETNW 354 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG---KDEILNGDVAFKLYDTHGLPLDIM 401 I + +E+E F +TL G +LD ++ L+G+ AF+L+DT+G P+D+ Sbjct: 355 ERIADVAYAEEETFRRTLSAGTTILDTAVAKAKAAGSATKLSGEEAFQLHDTYGFPIDLT 414 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKY-GATQFIG 459 ++ +G +D F + + EQ++RAR +L +G + I+ + + G + F+G Sbjct: 415 LEMAKEQG-VDVDEARFRELMLEQKTRARQDALAKKAGHVDSRIYHEFQNQLGGGSYFLG 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y SI+ IV +G V +EV+ D+TP Sbjct: 474 YTESE-----------------------TESIISGIVSEGAAVPALTGPADIEVILDKTP 510 Query: 520 FYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 F+AE GGQL D G G ++I DVQ +G+ VH + G L + V I Sbjct: 511 FWAEMGGQLADHGTIRTTGGAIVEIDDVQAPIKGLTVHRGRLVEGTLALGETAVAKICTD 570 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R ++ H+ATH++H L +G +Q GS +P LRFD H+ + L +E Sbjct: 571 RRLAIARAHTATHMVHKGLHEFIGEGATQAGSENSPSRLRFDFRHTSAVPVDVLGELEAR 630 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN +A NL V IMN +DA A GA AL G KY + VRVV++ S LC GTH Sbjct: 631 VNQQLANNLTVTDTIMNIDDAKAMGAMALFGEKYGNEVRVVNIGD----GWSVELCAGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +TG I + ++ E+SI +G+RRI+A+ G A +H + + L + + G Sbjct: 687 VPTTGHIGRVALLGEASIGSGVRRIDALVGDGAYAHQAKEHALVSQLTGLIGGKSDELPG 746 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSV 812 +VE + ++ + + AK + + ++ + + + ++ L+S+ Sbjct: 747 KVESLLKKLKDAEKQIAKLGEAQMLARAAELATQVERLGAFDAVIVNLGEAASAEGLRSL 806 Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGG 869 + ++ ++ +++ K V++ E A L RL+++ L GG GG Sbjct: 807 VLDVRARLGEANPVVVAGIGVISDKPQVVVATNEAARGAGAKAGALVRLASQTLQGG-GG 865 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897 GR +AQ GG N +A+ V L+ Sbjct: 866 GRDDVAQGGGQNPAAVPEAVEVVKQALR 893 >gi|317180966|dbj|BAJ58752.1| alanyl-tRNA synthetase [Helicobacter pylori F32] Length = 847 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 326/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLHFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVVFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFETCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECCAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++LP M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNVQIFKHLPSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APIS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + K A++ + Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839 >gi|317178465|dbj|BAJ56253.1| alanyl-tRNA synthetase [Helicobacter pylori F30] Length = 847 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 325/891 (36%), Positives = 482/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNVYAPNEFAGYETTECCAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+ V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITEANPNQEAWVLLEETPFYAEGGGAIGDRGALLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----VSIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKNKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + K A++ + Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839 >gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] Length = 955 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 299/956 (31%), Positives = 454/956 (47%), Gaps = 89/956 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P Sbjct: 16 VRDTYVDFFKGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLTRA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE EA +W + L + +++ DNFW M +TGPCGPC+ Sbjct: 136 TDRIYATYFGGDEKAGLQPDNEARDIWLQF--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG ER+ Sbjct: 194 EIHYDRVGNRD-AAYLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSF 284 +VLQ K +NYD D+F + ++ T G + + + +RV+ DH+R+ SF Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARAYSGKVGPEDDDRVDMAYRVVADHIRTLSF 312 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P NEGR YVLRRI+RRA+ Y + L E L+ ++ MG + EL + Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKQILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I E ++ E+ F KTL +G+ + L+G+ AF L+DT+G PLD+ Q Sbjct: 373 EKKITEIIKEEEASFCKTLVKGIEKFQKA-EQAVQGNTLSGEDAFVLWDTYGFPLDLTQL 431 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + R +D+ FN+A+EE R R+R+ G D Sbjct: 432 MAEER-RLLVDVEGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S K S +KAI +E + V +V T FYAE Sbjct: 474 ATSTLHKTGVSATDDSFKYIWFQDHESELKAIYTGSTFLESLAATDNVGLVLGSTSFYAE 533 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ DTG G + +VQ + + + G + ++ +DY+ R+ Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVVHIGYLSKDAGEVSVGDKVICKVDYERRKL 593 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ TH+L+ AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ IE VN Sbjct: 594 IAPNHTCTHMLNFALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653 Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690 I L V ++ +A G A+ G Y D VRVVS+ + + S Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRQVEDLLADPENNEWSLLS 713 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746 S CGGTH+++T E ++SE I GIRR+ A+T + A L + + Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773 Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784 S LK ++ ++ + E RK Q A++ L+ +V+ Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRAKIASLQNEVRKAQKKIAEQNLKKSVKVA 833 Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 F + +D+ ++ + + +K I++ KA V Sbjct: 834 TEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 893 Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V E D + + + L G G G+ +A G + ++ A+ ASF Sbjct: 894 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMAASF 949 >gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana] Length = 1003 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P Sbjct: 64 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 124 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 183 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC+ Sbjct: 184 TDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 241 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG ER+ Sbjct: 242 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 300 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 +VLQ K +NYD D+F + ++ TG + + +RV+ DH+R+ SF Sbjct: 301 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 360 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P NEGR YVLRRI+RRA+ Y + L E L+ ++ MG + EL + Sbjct: 361 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 420 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I + ++ E+ F KTL +G+ + L+GD AF L+DT+G PLD+ Q Sbjct: 421 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 479 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + RGL +D+ FN+A+EE R R+R+ G D Sbjct: 480 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 521 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S K S +KAI +E + + V +V T FYAE Sbjct: 522 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 581 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ DTG G + +VQ + + + E G + ++ +DY+ R+ Sbjct: 582 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 641 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ IE VN Sbjct: 642 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 701 Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690 I L V ++ +A G A+ G Y D VRVVS+ + + S Sbjct: 702 IKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEWSLLS 761 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746 S CGGTH+++T E ++SE I GIRR+ A+T + A L + + Sbjct: 762 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 821 Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784 S LK ++ ++ + E RK Q A++ L+ +V+ Sbjct: 822 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 881 Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 F + +D+ ++ + + +K I++ KA V Sbjct: 882 TEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 941 Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V E D + + + L G G G+ +A G + ++ A+ +SF Sbjct: 942 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 997 >gi|317177983|dbj|BAJ55772.1| alanyl-tRNA synthetase [Helicobacter pylori F16] Length = 847 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 327/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCG CSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGSCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L + K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKEFKEMVLKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-VRVDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ S Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECSAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----TSIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ + ++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + K A+ + Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALNLAKN 839 >gi|115481322|ref|NP_001064254.1| Os10g0182000 [Oryza sativa Japonica Group] gi|110288715|gb|ABG65948.1| Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113638863|dbj|BAF26168.1| Os10g0182000 [Oryza sativa Japonica Group] gi|215694746|dbj|BAG89937.1| unnamed protein product [Oryza sativa Japonica Group] Length = 999 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 307/963 (31%), Positives = 457/963 (47%), Gaps = 95/963 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 S +R TF+ FF+ H PSS ++P +DPTL+F N+GM FK +F G P Sbjct: 55 ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 114 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ + Sbjct: 115 RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 174 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L R+Y T + DE E+ +W K L +K++ DNFW M +TGPCG Sbjct: 175 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 232 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PC+EI FD+ + + IEIWNLVF+QF ++ LP +DTGMG Sbjct: 233 PCTEIHFDRVGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 291 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDHL 279 ER+ ++LQ K +NYD D+F + A Q+ G + + +RV+ DH+ Sbjct: 292 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 351 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338 R+ SF IADG P NEGR YVLRRI+RRA+ + L + L+ MG +P Sbjct: 352 RTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFP 411 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396 EL + I++ ++ E+E F TL +G + + +L+G AF L+DT+G Sbjct: 412 ELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGTVLSGQDAFVLWDTYGY 471 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL+ +D F+ A+EE R +AR G S+ AT Sbjct: 472 PVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANAT- 522 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 ++ P S+VKAI E V A + +V + Sbjct: 523 ----------AQLRNQGLASTDDSPKYGYKDNDSVVKAIYTGSEYVSAASGDEDFGLVLE 572 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL--RTEMSLVLT 574 T FYAE GGQ+ DTG G +T+VQ A +H +G + Sbjct: 573 STSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFAGY-VLHMGSFTKGSKALSVGDKVACK 631 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +DY R ++ NH+ TH+L+ AL ILG HV Q GS + P+ LRFD +H KP+ +L+ Sbjct: 632 VDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRK 691 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682 IE VN I L V R + DA +G A+ G Y D VRVVSV Sbjct: 692 IESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPE 751 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---- 738 ++ S+ LCGGTH+ +T E ++SE I G+RRI A+T + A + Sbjct: 752 SKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSID 811 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IH 774 ++ + S+ S L + ++ GRV ++ +E RK + + Sbjct: 812 SEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEEN 871 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK- 832 ++ ++ ++ F + +D+ ++ + ++ + + IML + Sbjct: 872 IQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVIKVKDQ-KDLPIMLFSTDEA 930 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 KA + V + +D S L G GGGG+ +AQ G ++ +A+ Sbjct: 931 TNKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVA 990 Query: 893 ASF 895 Sbjct: 991 TQI 993 >gi|71022301|ref|XP_761380.1| hypothetical protein UM05233.1 [Ustilago maydis 521] gi|46097613|gb|EAK82846.1| hypothetical protein UM05233.1 [Ustilago maydis 521] Length = 990 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 315/978 (32%), Positives = 467/978 (47%), Gaps = 110/978 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 + +R TF +FQ+ H +PSSS IP +DPTL+F N+GM +K IF G P Sbjct: 24 ATKVRDTFTGYFQERKHTFVPSSSTIPYDDPTLLFANAGMNQYKPIFLGIADPNSSFGSM 83 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI++AW+LLTK + Sbjct: 84 KRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEMAWELLTKVY 143 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T ++ D EA LW K G+ D I+ DNFW M TGPCG Sbjct: 144 GLPKDRLYVTYFEGDAKQGLEPDLEARDLWLK-VGVDEDHILTGDAKDNFWEMGATGPCG 202 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ +++ IEIWN VFMQF +++ LP IDTGMG Sbjct: 203 PCSEIHYDRI-GGRNAADLVNKDDPNVIEIWNNVFMQFNREDDGSLRPLPAKHIDTGMGF 261 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRS 281 ER+ ++LQ+K +NYD D+F + +Q+TG + + +RV+ DH+R+ Sbjct: 262 ERLVSILQDKPSNYDTDVFTPIFNKIQQLTGARAYTGKLGAEDKDGIDTAYRVVADHVRT 321 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339 +F I+DG +P +GRGYVLRRI+RR Y R L+P L +MG +PE Sbjct: 322 LTFAISDGGVPDRDGRGYVLRRILRRGTRYVRKYFQVPIGSFFSQLVPTLVEQMGHFFPE 381 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397 + + ++ L E+ F +TLDRG L + + ++ L+G+ +KLYDT G P Sbjct: 382 ITKKVDDVKAILDEEEASFARTLDRGERLFEEYAAKAKAAGNKQLSGNDVWKLYDTFGFP 441 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + +GL G++ F A E + ++A G T+ Sbjct: 442 VDLTLIMAEEQGL-GVNEKEFEAAQAESKEISKAGGKK-----------------GETEA 483 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQ---KVEV 513 + +D+ K+ Q N V + VKAI Q V+ G + Sbjct: 484 VKFDVHDLGHLEKDSSVPKTQDDFKYGVNTVKASVKAIYQDHAFVDNTSKIGDRAKNFGI 543 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T YAE+GGQ DTG + DG + + + G +H ++ G L +V+ Sbjct: 544 LLDRTCLYAESGGQQADTGSIVIDGKTEFVVEDAQVFSGYVLHIGHLKHGELGLNDEVVV 603 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 + D R L NH+ATH+L+ L +LG H+ Q GS + P LRFD +H + + ELK Sbjct: 604 SYDQSRRGPLQSNHTATHILNFGLREVLGDHIDQKGSLVAPTKLRFDFSHKQGVNVQELK 663 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS-----------V 681 IED D I +++ V ++ M + A G A+ G Y + VRVV+ + Sbjct: 664 KIEDISIDWIKRDVGVYSKEMPLDTAQKIPGLRAVFGEAYPNPVRVVTLEYDLDTIADDI 723 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---------- 731 E S CGGTHV+ TGEI I ES I GIRRI A+TG A Sbjct: 724 ENTKWRGTSVEFCGGTHVAKTGEIGEFVITEESGIAKGIRRIIAVTGNEAAAVTKVADDA 783 Query: 732 ------RSHLMGQ---DEKLKSLASFL---------KVSQGNVVGRVEEIWEEYRKLQLI 773 + Q D LK+ + L K S + + + K + Sbjct: 784 EVRLAEIDAIQEQSAKDAALKAFGTQLAQLDMSVVRKASLNETFAAIRKKLDSGLKAKDK 843 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-----------S 822 + + VE+ K F+ + K L+S ++ ++K + + Sbjct: 844 ADTKLVVSAVEEHFKTKPNSTCFIHKFDVGSNMKALQSALNTVKKMDKTAYLFSQELDVN 903 Query: 823 GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS---- 877 G+ + G + + K + V++ D NA + SA+ + GG GGG+ AQ Sbjct: 904 GVKVADGNAIKAKVVHVAYVSKHDQAKGLNAKEWIETSAQHV-GGKGGGKTDSAQGIGEM 962 Query: 878 GGPNGNKADQAIAGVASF 895 GG + A+ F Sbjct: 963 GGQ---ALEDAVEAAKRF 977 >gi|291390471|ref|XP_002711725.1| PREDICTED: alanyl-tRNA synthetase [Oryctolagus cuniculus] Length = 945 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 312/961 (32%), Positives = 467/961 (48%), Gaps = 95/961 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSGTIPLDDPTLLFANAGMNQFKPIFLNTIDPTHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F + RLY+T L KI+ DNFW M +TGPCGPCSEI + Sbjct: 126 FGIPIERLYVTY----------------LDDTKILPGNMKDNFWEMGDTGPCGPCSEIHY 169 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMGLER+ +VL Sbjct: 170 DRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMGLERLVSVL 228 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIAD 288 Q K +NYD DLF +A ++ TG + + +RV+ DH R+ + +AD Sbjct: 229 QNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDVDGIDMAYRVLADHARTITVALAD 288 Query: 289 GILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL + ++ Sbjct: 289 GGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMV 348 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ I Sbjct: 349 KDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLIAEE 408 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +GL +D+ F + +R A+ S G G+G + I + + G + S Sbjct: 409 KGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAKGLEATDDSP 462 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + + V A+ ++ VEE +GQ+ VV D+T FYAE GGQ Sbjct: 463 K----YNYQADSSGSYVFESTVATVLALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQ 518 Query: 528 LGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 + D G + + + T + G +V H G LR + L ID RR + Sbjct: 519 IYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTVYGSLRVGDQVRLFIDEPRRRPV 578 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K E+ N++I Sbjct: 579 MSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMI 637 Query: 644 AQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSS 691 A PV T+ G A+ Y D VRVVS+ G + S Sbjct: 638 AAAKPVYTQDCALAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSGPAGSLTSV 697 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---SF 748 CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + KSL+ + Sbjct: 698 EFCGGTHLRNSSHAGDFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKSLSVMEAK 757 Query: 749 LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHKIADVN-- 795 +K +V + ++ E +++K +L + L+ ++DL ADV Sbjct: 758 VKAQTAPNKDVQKEIADLGEALAAAVIPQWQKDELRETLKSLKKIMDDLDRASKADVQKR 817 Query: 796 -----------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKAS 837 + + S +K L + + ML + E K + Sbjct: 818 VLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEAGKIT 877 Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 L V ++ +R A + + + L G GGG+ AQ+ G N +A+ SF Sbjct: 878 CLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEALQLATSFA 936 Query: 897 K 897 + Sbjct: 937 Q 937 >gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] Length = 955 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P Sbjct: 16 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC+ Sbjct: 136 TDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG ER+ Sbjct: 194 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 +VLQ K +NYD D+F + ++ TG + + +RV+ DH+R+ SF Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 312 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P NEGR YVLRRI+RRA+ Y + L E L+ ++ MG + EL + Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I + ++ E+ F KTL +G+ + L+GD AF L+DT+G PLD+ Q Sbjct: 373 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 431 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + RGL +D+ FN+A+EE R R+R+ G D Sbjct: 432 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S K S +KAI +E + + V +V T FYAE Sbjct: 474 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 533 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ DTG G + +VQ + + + E G + ++ +DY+ R+ Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 593 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ IE VN Sbjct: 594 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653 Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690 I L V ++ +A G A+ G Y D VRVVS+ + + S Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLS 713 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746 S CGGTH+++T E ++SE I GIRR+ A+T + A L + + Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773 Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784 S LK ++ ++ + E RK Q A++ L+ +V+ Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 833 Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 F + +D+ ++ + + +K I++ KA V Sbjct: 834 TEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 893 Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V E D + + + L G G G+ +A G + ++ A+ +SF Sbjct: 894 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 949 >gi|320040301|gb|EFW22234.1| alanyl-tRNA synthetase [Coccidioides posadasii str. Silveira] Length = 964 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 291/966 (30%), Positives = 465/966 (48%), Gaps = 96/966 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60 +R TFL+FF+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 19 KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 78 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L Sbjct: 79 AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 138 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T ++ D E LW G+ D I+ DNFW M + GPCGPC Sbjct: 139 EPDRLYVTYFEGNKDAGIEPDLETKDLWLS-VGVKEDHILSGNMKDNFWEMGDQGPCGPC 197 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SE+ +D+ + + +EIWN VF+Q+ ++++ LP +DTGMG ER Sbjct: 198 SEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 256 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283 + +VLQ+K +NYD D+F L A ++TG++ +RV+ DH+R+ + Sbjct: 257 LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRTLT 316 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341 F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ Sbjct: 317 FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 376 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399 + + + E L E+ F KTLDRG + L+G ++LYDT G P+D Sbjct: 377 KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 436 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + Q + RGL+ ++ R +A+ S G ++ + S+ + Sbjct: 437 LTQLMAEERGLSIDNVEFEEA-----RLKAKEASKGQAKAASDLLKLSVHDL-------- 483 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516 +++D+ + S + A+ E V+ G ++ ++ D Sbjct: 484 -------SKLEKDKVPKTNDDAKFGRGNILSQIVAVYHDKEFVDSTSGIPEGDQIGIILD 536 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +T FYAE GGQ DTG I DG + G H ++ G L S++ D Sbjct: 537 KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVFHTGFIKYGNLSVGDSVISEYD 596 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + NH+ TH+L+ AL +LG+ + Q GS + + LRFD +H ++ ++L+ IE Sbjct: 597 ELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKIE 656 Query: 637 DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 + + I QN V ++ + +G A+ G Y D VRVVSV Sbjct: 657 EKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKDP 716 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736 S CGGTHV TG+I L I+ E I GIRRI A+TG+ A Sbjct: 717 RWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGDR 776 Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHA 775 ++++ K + + L + V + +++ E + LQ Sbjct: 777 LNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQEI 836 Query: 776 KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 K L + D + + + + ++K + ++ + K++ I + E Sbjct: 837 KAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAEQ 896 Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + + V+ L +A + + + + ++ GG GG+ + G ++ D+AI Sbjct: 897 GRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEAA 955 Query: 893 ASFLKK 898 +L++ Sbjct: 956 TKYLEQ 961 >gi|308062521|gb|ADO04409.1| alanyl-tRNA synthetase [Helicobacter pylori Cuz20] Length = 847 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 322/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ S Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECSAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+V V+ ++TPFYAE GG +GD G D + Sbjct: 467 --------------DFKEITDANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAM 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED +N I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDKELEKVEDLINAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQKTPVSM------ 737 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI V+ + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 738 -DLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + K A+ + Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALNLAKN 839 >gi|269977319|ref|ZP_06184292.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1] gi|269934622|gb|EEZ91183.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1] Length = 894 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 319/926 (34%), Positives = 493/926 (53%), Gaps = 64/926 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F NGHE+ PS SLI DP+++FT +GMVPF G E + Sbjct: 1 MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT Sbjct: 60 TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD ++++T+++ED+EA+++W K GL I ++ + FW + GP G C+EI Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGL 230 +D+G P G P +G+R++E+WNLVF +F + + K + + L + +IDTG+GL Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ+K N Y+ID +IQ +++++G KY + V+ RV+ DH+RS+ LI Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGYVLRR+MRRA+ RLLG E +M LLPA M +YPEL I Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E++ F +TLD G V+LD V L+G+ AF+L+DT+G PL + +I Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462 + +D F + + EQ+ RARA ++ +G + ++ L EK G T +F+GY Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGYTE 474 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + V I+Q G+ V A + +EV+ D+TPFYA Sbjct: 475 TSAP-----------------------AKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511 Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 EAGGQL D G + G + DVQ +G+ +H + G + TID + R Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ H++TH++H L LG +Q GS P +RFD +SKP+++ L+ +E N+ Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + NL V+ M E+A +GA A+ G KY VR+V + S CGGTHV Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSKEFCGGTHVPL 687 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG I L ++SE S+ +G+RRIEA+ G A + + + + + ++V R+ Sbjct: 688 TGAIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + E + + K +L + +L S I F+ +S +L+ L Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQL 807 Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 + K +S ++ L KE K +++ E ++ A L + A + GGG GG+ Sbjct: 808 RGRFSKTESVVVALGAKIKE-KPMMVVATNEAAREKGVKAGALVKAGAAAMQGGG-GGKD 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG G + + + L++ Sbjct: 866 DLAQGGGAPGGSLENGLKAATTELQQ 891 >gi|50954761|ref|YP_062049.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07] gi|59798521|sp|Q6AFA1|SYA_LEIXX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50951243|gb|AAT88944.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 885 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 309/904 (34%), Positives = 476/904 (52%), Gaps = 59/904 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L+FF + GH ++PS+SL+ +DP+L+FT +GMVPF TG + Sbjct: 1 MQTAEIHRRWLDFFARRGHTVVPSASLV-SDDPSLLFTVAGMVPFVPYLTGIVPAPFPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116 T+VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE+AI AWDLLT Sbjct: 60 TSVQKCIRTL----DIEEVGKTPRHGTFFQMCGNFSFGDYFKEQAIAFAWDLLTTAETEG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D + L++TVY+ED+EA ++W+++SGL+ ++I + + N+WS + GP GPCSEIF Sbjct: 116 GLGFDPKDLWVTVYEEDDEAREIWRRVSGLAEERIQGLGKDTNYWSTGQPGPAGPCSEIF 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230 FD+G G G + + +RY+EIWNLVFMQF + + + LPK +IDTG+GL Sbjct: 176 FDRGPAY-GIDGGPATDDDRYVEIWNLVFMQFLRGEGTGKDDFEILGDLPKKNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A + Q N Y+ID + ++ + ++ G Y + V RV+ DH+RS+ L+ Sbjct: 235 ERVAFLKQGVENMYEIDQVRPVLDRAAELAGKPYGNEAHEDDVRLRVVADHVRSALMLMT 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGYVLRR++RR + LLG L P M +AYPE+ Sbjct: 295 DGVTPSNEGRGYVLRRLLRRTVRAMWLLGVEAATFPALFPVSRDAMKAAYPEVETEFART 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E+E F +TL G +LD +++ K L GD AF L+DT+G P+D+ ++ Sbjct: 355 SQLAYAEEETFLRTLVAGTSILDTAVANTQKAGKRELAGDTAFLLHDTYGFPIDLTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL+ +D +F+ + +QR+RA+A + + + +S G T F GY L Sbjct: 415 EEAGLS-VDRAAFDTLMADQRARAKADAKAKKTALADLSVYSGLRALGETVFTGYTELE- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V ++ G +AV GQ EV+ T YAEAG Sbjct: 473 ----------------------TESSVLGLIIDGHSANKAVEGQVAEVILGATALYAEAG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ DTG +G G L + DVQK G+ H +V G + + +D RR Sbjct: 511 GQDADTGTIVGPGYVLDVLDVQKPVRGLVSHRVLVRSGEVGVGVPATSLVDADYRRGAKQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LGS+ Q+GS LR D + ++ ++ IE+ N I Q Sbjct: 571 AHSGTHIIHAALRQVLGSNAHQSGSYNKAGYLRLDFSWNQALSPETRSEIEEISNSAIRQ 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V TR + +A A GA AL G KY D VRVV + GG S LC GTHV+ + EI Sbjct: 631 NLEVTTRELPLAEAKALGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVARSAEI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ +VSESS+ + RR+E++ G A L + + L+S LK + + ++ ++ Sbjct: 687 GLINLVSESSVGSTNRRVESLVGLEAFKDLAVERTIVSQLSSSLKTPREQLPEKIADLMA 746 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD-SKELKSVMDALQKK 819 + + + + ++ + + + V ++ + + +L+ + ++ + Sbjct: 747 SLKAAEKRIQAFEARAVLDRVQGLLEAVSRRGAVQVVAADAGTLSTADDLRLLAITVRDR 806 Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + S + L ++ K ++ A LA+ +A VLGGGG GG+ +AQ Sbjct: 807 LGSDPATVALAALAGGKPVVIVATNQAARDAGVTAGALAKTAAGVLGGGG-GGKADLAQG 865 Query: 878 GGPN 881 GG + Sbjct: 866 GGTD 869 >gi|171915187|ref|ZP_02930657.1| alanyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136] Length = 917 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 307/958 (32%), Positives = 455/958 (47%), Gaps = 106/958 (11%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 + IR +FL+FF++ H ++PS ++ D +FTN+GM F IF G+ Sbjct: 1 MTSAQIRQSFLDFFKEKQHTIVPSDNVGYTSRDGARIFTNAGMNQFVPIFLGERPADVDT 60 Query: 59 ----------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQ 108 QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG YFK+ AI Sbjct: 61 WPGVLHKGLPTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKDAIS 120 Query: 109 LAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKI---SGLSAD-KIIRITT 156 AW+L+ + + R++ T+Y + DEE++ W + GL + I+ Sbjct: 121 WAWELVIERWKFPPTRVFATIYQPGEGDPAERDEESWGYWAEKFRSVGLDPEIHIVNGNK 180 Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPG--------GLPGSSEEGERYIEIWNLVFMQF 208 DNFW MAETGPCGPC+EI D G + IEIWN VF+Q+ Sbjct: 181 KDNFWMMAETGPCGPCTEIHIDLTPGPRDLDEGRQREGAKLVNGSSADCIEIWNNVFIQY 240 Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQE----------KTNNYDIDLFKHLIQASEQ 258 + LP +DTGMG ER+ +++Q K +NYD D+FK + + Sbjct: 241 NANADKTFSKLPAQHVDTGMGFERVTSIIQGTRNFTDFENAKISNYDTDVFKPIFDEISK 300 Query: 259 VTGMKY--------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 ++G Y + V RV+ DH+R+ SF IADGI P N R Y LRRI Sbjct: 301 MSGKTYASTLPASGSTGDTEQEKIDVAFRVLADHIRTLSFSIADGISPGNNDRNYTLRRI 360 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ Y R LG+ EP L+ L MG +PEL K ++ L+ E+E F +TLDR Sbjct: 361 LRRAVKYGRTLGFKEPFFYKLVDVLAQHMGEVFPELRARKEHVKSVLKMEEESFNRTLDR 420 Query: 365 GLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L + G+VAF+L DT G P+D+ Q + RGL + + L Sbjct: 421 GISLFESEADKLAGKGTEITGEVAFRLSDTFGFPIDLTQLLARERGLTVDVPE-YERLLA 479 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ+ R+ S G + + S E T+FIGYD L Sbjct: 480 EQKKRSTEDSKGRK----QVVSLSEIETKEPTKFIGYDNLEAPA---------------- 519 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 +++E K VV D +PFYAE GGQ+GD+G I I Sbjct: 520 ----------------KVLEVVSMKDKTAVVLDSSPFYAEMGGQVGDSGALIIGADSFPI 563 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 ++ QK H + + L ++ RR + +H+ TH++H AL ++ Sbjct: 564 SNTQKVGNT--WLHFLDGEDTPSVGVEAQLAVEPSRRRAIERHHTVTHIMHWALHEVVSK 621 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 +Q GS + PD L FD S +T+A+L IE VN+ I N V + + ++ Sbjct: 622 EATQKGSFVGPDKLTFDFN-SAALTAAQLADIERLVNERIVANDVVSWDELPYAEVKSNP 680 Query: 664 AAAL-LGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 G KY D+VRVV V + +S LCGGTH STGEI L +VSES++ AG+ Sbjct: 681 GIMQLFGEKYGDKVRVVQVGGQAHALNGYSMELCGGTHTRSTGEIGLFRLVSESAVSAGV 740 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 RR+EAI G A + LK LA L ++ ++E + ++ + L+ + Sbjct: 741 RRLEAIAGLEAYRAARSDADLLKLLAGKVLAQGTLDLEKKIETLLDQQKALEKALKSAQQ 800 Query: 780 QLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + +A + + + EVD +V DAL+ + SGI+++ G + S+ Sbjct: 801 REAAARAKALLGLASNDAIIANLGEVDGDYAMAVSDALKS-LFSGIVVVAGTA-GGNVSL 858 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + V++D + A + + A ++ GG GGG+P A+ GG K D A+ + Sbjct: 859 IATVSKDHQAKLQAGKIIQAIAPIV-GGKGGGKPDFARGGGKEVAKVDAALDEARKLV 915 >gi|50545890|ref|XP_500483.1| YALI0B04180p [Yarrowia lipolytica] gi|49646349|emb|CAG82710.1| YALI0B04180p [Yarrowia lipolytica] Length = 960 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 298/966 (30%), Positives = 464/966 (48%), Gaps = 89/966 (9%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R TFL++F +K H +PSSS+IP +DPTL+F N+GM +K IF G P Sbjct: 10 ATKVRKTFLDYFGEKRAHSFVPSSSVIPYDDPTLLFANAGMNQYKPIFLGTCDPSSPLSK 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK A AW+LLT+ Sbjct: 70 LNRAANSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKAEACAWAWELLTQV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY++ + D+ EA ++W + G++ D I+ + DNFW M + GPC Sbjct: 130 YGLDADRLYVSYFGGDDKLGLQPDLEAKQIWMDL-GVAEDHILPGDSADNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWN+VF+Q+ ++ + LP IDTGMG Sbjct: 189 GPCSEIHYDRIGGGRNARDLVNMDDPNVLEIWNIVFIQYNREADKSLKPLPAKHIDTGMG 248 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F + +++TG + +RV+ DH+R Sbjct: 249 FERLVSVLQDKSSNYDTDVFTPIFAKIQELTGARDYAGKFGAEDADGIDTAYRVVADHVR 308 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P N+GRGYVLRRI+RR + R L P L ++ +P Sbjct: 309 TLTFALADGGVPNNDGRGYVLRRILRRGARFVRKKFDVPIGSFFSQLAPTLIEQVNEIFP 368 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + I E L E++ F +TLDRG L + + +L G ++LYDT+G Sbjct: 369 ELSKRTEDIFEILNDEEQSFSRTLDRGEKLFEQYAADAKANSKTVLAGKDVWRLYDTYGF 428 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID +F++A +E ++ G K+ + Sbjct: 429 PVDLTRIMAEEAGL-DIDEAAFDKAKQESLEASKGGKKTAGGVQLVKLDVHALAELEKND 487 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVF 515 + + +N + V AI V+ +V ++ Sbjct: 488 AV---------------PKTDDQAKFTESNLSDAKVVAIYNGTGFVDSVDESAGQVGLLL 532 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T YAE+GGQ DTG + DG + + G +H G L+ + + Sbjct: 533 DKTCMYAESGGQEYDTGKIVIDGQTEFDVNNVQVYAGYVLHTGNFNYGSLKIGDVVNVGF 592 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R L NH+ TH+L++AL LG + Q GS + + LRFD +H +T AE+ + Sbjct: 593 DTARRTPLKNNHTGTHVLNYALKETLGDTIDQKGSLVASEKLRFDFSHKAGLTPAEVAKV 652 Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVR-----------VVSVEY 683 ED N I +NL V + + +G A+ G Y D VR + + + Sbjct: 653 EDISNAYITKNLAVYAKSVDLTTAKKINGVRAVFGETYPDPVRVVSVGVPVEDLIANPDD 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---RSHLMGQDE 740 +S CGGTHV TGEI L I+ ES I GIRRI A+TG+ A + DE Sbjct: 713 AKWAEYSVEFCGGTHVGKTGEIKHLVIIEESGIAKGIRRIVAVTGKEAADVQKLAAEFDE 772 Query: 741 KLKSLASF-LKVSQGNVVGRVE--------------EIWEEYRKLQL-----IHAKRKLQ 780 +L LA+ L + + + E++ K+Q I AK K + Sbjct: 773 RLDKLAAQPLGADKEQAAKAIGVELKKLSVSTTSKLALQEKFNKIQKTITDGIKAKLKAE 832 Query: 781 LNVEDLSC----HKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV-GISKE 833 K + ++ + ++ +SK L ++ ++ K+ + L G E Sbjct: 833 SKASTDLVSSYFEKNPEATYLVAHVPDISANSKALSETINHVKSKLPGKSVYLFAGSPAE 892 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K + + E + ++ A + ++A ++GG GG P + Q G N +K A++ + Sbjct: 893 GKVAHACFIDESVSNKGLTAQQMGAIAAGLVGGRSGGKGPTI-QGSGDNADKIADAVSEL 951 Query: 893 ASFLKK 898 + K Sbjct: 952 EKEITK 957 >gi|421855|pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana (fragment) Length = 989 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P Sbjct: 50 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 109 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 110 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 169 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC+ Sbjct: 170 TDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 227 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG ER+ Sbjct: 228 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 286 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 +VLQ K +NYD D+F + ++ TG + + +RV+ DH+R+ SF Sbjct: 287 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 346 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P NEGR YVLRRI+RRA+ Y + L E L+ ++ MG + EL + Sbjct: 347 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 406 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I + ++ E+ F KTL +G+ + L+GD AF L+DT+G PLD+ Q Sbjct: 407 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 465 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + RGL +D+ FN+A+EE R R+R+ G D Sbjct: 466 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 507 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S K S +KAI +E + + V +V T FYAE Sbjct: 508 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 567 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ DTG G + +VQ + + + E G + ++ +DY+ R+ Sbjct: 568 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 627 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ IE VN Sbjct: 628 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 687 Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690 I L V ++ +A G A+ G Y D VRVVS+ + + S Sbjct: 688 IKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEWSLLS 747 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746 S CGGTH+++T E ++SE I GIRR+ A+T + A L + + Sbjct: 748 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 807 Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784 S LK ++ ++ + E RK Q A++ L+ +V+ Sbjct: 808 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 867 Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 F + +D+ ++ + + +K I++ KA V Sbjct: 868 TEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 927 Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V E D + + + L G G G+ +A G + ++ A+ +SF Sbjct: 928 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 983 >gi|320093740|ref|ZP_08025599.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979325|gb|EFW10816.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338] Length = 918 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 324/932 (34%), Positives = 484/932 (51%), Gaps = 71/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +LEFF HE+ PS LI P+++FT +GMVPF G E + Sbjct: 20 MRTSEIRSRWLEFFAARDHEIRPSVPLISPE-PSILFTVAGMVPFIPYILGTEPAPWPRA 78 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKCVR ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW LLT Sbjct: 79 ASVQKCVRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDFAWHLLTDPRDQG 134 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T+++ED+ +F W + GL A++I R+ + WS + GP G C EI Sbjct: 135 GYGLDGDRLWMTIWEEDQVSFDYWTREIGLPAERIQRLPFAEISWSTGQPGPAGSCCEIH 194 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKM----SIDTGMGL 230 +D+G PGG P G+R++EIWNLVF +F + F L +IDTG GL Sbjct: 195 YDRGAQYGPGGGPVVDTGGDRFLEIWNLVFDEFVRGEGAGHDFELVGKLDRTAIDTGAGL 254 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279 ER+A ++Q+K N Y+ID +I A+E ++G Y + V RV+ DH+ Sbjct: 255 ERLAFIMQDKPNMYEIDEVFPVIAAAEAMSGKTYGLGAAGPEAGEAYADDVRLRVVADHV 314 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RSS LI DG+ P N+GRGYVLRR++RRA+ RLLG + M LL A M ++YPE Sbjct: 315 RSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVHDAAMPVLLTASKDAMRASYPE 374 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPL 398 L I E +E++ F +TL G +LD ++ + G AF L+DT+G P+ Sbjct: 375 LEADWGTISEVAYAEEDAFRRTLSAGTTILDTAVAQARSAGSPIPGASAFSLHDTYGFPI 434 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGATQ 456 D+ ++ +G+ +D F +EEQ+ RARA + +G T+ F EK G ++ Sbjct: 435 DLTLEMAAEQGVK-VDEDGFRALMEEQKERARADARAKKTGHTDVRVFQEIEKRLGGGSE 493 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F+GY +G + V A++ G A +G VEVV D Sbjct: 494 FLGYTE-----------------------SGCDASVVALLVDGHDAPAAQAGADVEVVLD 530 Query: 517 QTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +TPFYAE GGQL D G +G +++ DVQ G+FVH V G + I Sbjct: 531 RTPFYAEMGGQLADHGTIRAEGGAVIEVNDVQAPIRGLFVHRGTVVEGAVAVGERAFAQI 590 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + R ++ H+ATH+++ L ++G SQ GS +P LRFD HS + ++++ I Sbjct: 591 DTRRRLAIARAHTATHMVYAGLRAVVGQDASQAGSENSPSRLRFDFRHSSALGASQVDDI 650 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN+ +A++LPV T +M E+A ASGA AL G KY RVRVV++ LCG Sbjct: 651 EALVNEKLAEDLPVTTEVMGIEEARASGAIALFGEKYGSRVRVVTIGD----GFDKELCG 706 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV STG + + ++ E SI +G+RRI+A+ G A + + + LAS + + Sbjct: 707 GTHVPSTGHLGRVTVLGEGSIGSGVRRIDALVGDGAYEYQAKEHAIVSRLASLVGGRPED 766 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD-SKEL 809 + RVE + ++ + K ++ + + I + + + V + L Sbjct: 767 LPERVEALLARLKESEKELEKSRIDQALSQAAGLAARAKTIGRLTGVVAAVGAVPSADAL 826 Query: 810 KSVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGG 865 +++ ++ +I ++ L G+ K S+++ + + A L R LGG Sbjct: 827 RTLALDVRDRIGGSGAAVVALAGLV-GGKPSLVVATNDGARARKAKAGALVRAVGSFLGG 885 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GG GGR +AQ GG +A+ + ++ Sbjct: 886 GG-GGRDDIAQGGGTKPEGVGRALEELRRQIE 916 >gi|213512300|ref|NP_001133550.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar] gi|209154450|gb|ACI33457.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar] Length = 967 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 311/973 (31%), Positives = 469/973 (48%), Gaps = 96/973 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + IR F++FF ++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFIRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A +A +LLTKE Sbjct: 66 LKRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACTMALELLTKE 125 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D E ++W + G+ +II + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHEEAGLDPDLECKQIWLDL-GMDEARIIPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI FD+ + + +EIWNLVF+Q+ ++++ E LPK SIDTGMG Sbjct: 185 GPCSEIHFDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQYNRESETELKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF QA ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFIPYFQAIQKGTGARDYTGKVGAEDVDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ LG + L+ + +G A+PE Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQKGFFATLVDVVVESLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+E+F KTL RG +LD + LG + + GD A+ LYDT+G PLD Sbjct: 364 LKKDPDMVKDIINEEEEQFLKTLSRGRKILDRKIQSLGDSKTIPGDTAWLLYDTYGFPLD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I RG+ +D+ +F + ++ A+ S G GSG + I + Sbjct: 424 LTALIAEERGMM-VDVAAFEE----EKKAAQVKSQGKGSGDEDHIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + LR D + V A+ ++ VEE +GQ+ V+ Sbjct: 471 -EDLRNKGIAATDDTLKYSYSADDSGKYVFEQAVGTVLALRRERAFVEEVTTGQECGVLL 529 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF----VHHAIVERGILRTEMSL 571 D+T FYAE GGQ D G + + + V H G L+ + Sbjct: 530 DKTSFYAEQGGQSFDEGYMLREDDSVDDRMEFTVKNTQVRGGYVLHVGTVYGTLKVGDHV 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 +L +D RR + NH+ATH+L+ AL +LG Q GS + PD LRFD T +++ E Sbjct: 590 ILHVDEARRRPIMSNHTATHILNFALREVLG-EADQRGSLVAPDRLRFDFTAKGALSTEE 648 Query: 632 LKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------- 682 ++ E+ +I G A+ Y D VRVVS+ Sbjct: 649 VRRTEEIACTMIRDAKHVYAMDTPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVADLLA 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++G IVSE +I GIRRI A+TG A+ D Sbjct: 709 DPSSTAGSLTSIEFCGGTHLRNSGHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAHRKAD 768 Query: 740 EK---LKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785 L +L +KV +V + ++ E +++K ++ A + L+ ++D Sbjct: 769 ALRQSLSALGEKVKVQTAPNKDVQKEIADMTEFLGMAVISQWQKDKMREALKGLKKTMDD 828 Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L ADV + + S +K L + L+ + M Sbjct: 829 LDRASKADVQKRVLEKTKEMIDSSPNQPLVVMEMESGASAKALNESLKLLKTQSPQTAAM 888 Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + + K L V +D+ +R A + + L G GGG+ AQ+ G N + Sbjct: 889 LFTVDHDAGKIVCLCQVPQDVANRGLKASEWVQELCP-LMDGKGGGKDMSAQATGRNTHC 947 Query: 885 ADQAIAGVASFLK 897 ++A+ F + Sbjct: 948 IEEALQMANQFAQ 960 >gi|168042124|ref|XP_001773539.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675078|gb|EDQ61577.1| predicted protein [Physcomitrella patens subsp. patens] Length = 937 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 304/921 (33%), Positives = 441/921 (47%), Gaps = 91/921 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 + +R TF FF+ H +PSS ++P +DPTL+F N+GM FK IF G P Sbjct: 9 ANRVRETFNSFFESKNHTFVPSSPVVPVDDPTLLFANAGMNQFKPIFLGTVDPRSARGNL 68 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT + Sbjct: 69 KRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIAWAWELLTSVY 128 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY T + D+EA +W+ + L ++ DNFW M ++GPCG Sbjct: 129 KLPKDRLYATYFGGDENLGLAADDEARDIWRGL--LPESHVLPFGCKDNFWEMGDSGPCG 186 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI FD+ + + +EIWNLVF+QF ++ +LP +DTG+G Sbjct: 187 PCSEIHFDRIGGRDASS-LVNMDDPNCLEIWNLVFIQFNREQDGSLKVLPAQHVDTGLGF 245 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRS 281 ER+ +VLQEK +NYD DLF + A ++ T G N + +RV+ DH+R+ Sbjct: 246 ERVTSVLQEKMSNYDTDLFTPIFGAIQKATGAREYSGKVGKDDTDNVDMAYRVVADHIRT 305 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 SF IADG P NEGR YVLRR++RRA+ Y R L E L+ + MG A+PEL Sbjct: 306 LSFAIADGSRPGNEGREYVLRRMLRRAVRYGREVLKAQEGFFSGLVDIVVEVMGEAFPEL 365 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + I+E + E+ F +TL +G+ + + D +L AF L+DT G P+D+ Sbjct: 366 KKNQAKIKEIISEEESSFSRTLVKGIEKFKKAAAEVK-DGVLGAQDAFILWDTFGFPIDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + GL +D FN+ +EE R +AR G Sbjct: 425 TELMAEEMGLK-VDKEGFNRTMEEAREKARGARGKAGGKALVM----------------- 466 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + S+ K KP + VKAI EE+ S + V +V D T + Sbjct: 467 EAEATSQLQKLGILPTDDKPKYIWHKNPTVTVKAIFTSSGF-EESTSDEDVGIVLDTTSY 525 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE GGQ+ DTG G + +VQ + +I G + + +DY R Sbjct: 526 YAEQGGQIYDTGVLEGPNGAFTVREVQIYGGYVLHIGSINNGGKISVGDKVTSQVDYARR 585 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ NH+ THLL++AL +LG H+ Q GS + PD LRFD +H KPI S +L IE V Sbjct: 586 AVVAPNHTCTHLLNYALKEVLGDHIDQKGSLVAPDKLRFDFSHGKPIDSKDLGEIEAIVA 645 Query: 641 DIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGV 688 I + V + + +A G A+ G Y D VRVV++ + Sbjct: 646 QQIRDGMTVYAKEASLAEAKRIMGLRAVFGEVYPDPVRVVAIGRPVEDLLADPENPNWAK 705 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD--------- 739 S+ CGGTH+S+T E +VSE I G+RR+ A+T A+ + + Sbjct: 706 LSTEFCGGTHLSNTKEAEAFALVSEEGIAKGVRRVTALTMGAAKEAIHQSEVFSSQIDKA 765 Query: 740 ------EKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNV 783 K +AS LK S NVV R+ E+ E RK Q A LQ + Sbjct: 766 SKLEGPALEKEVAS-LKNSLENVVIPAAKKAEFRTRLGELQERIRKAQKAAAGSNLQTAL 824 Query: 784 EDLSCHK----IADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KAS 837 + F I +D+ ++ + + +K + +M+ + ++K K Sbjct: 825 NGAVSSADTAVAQNQPFCVLRIDVGLDTNAVREAVTLVMEKHKDLAVMIFSVDEQKNKVL 884 Query: 838 VLIVVTEDLLD-RFNAVDLAR 857 V V + +D R Sbjct: 885 VYAGVPDSAAKQGLKVLDWLR 905 >gi|308064021|gb|ADO05908.1| alanyl-tRNA synthetase [Helicobacter pylori Sat464] Length = 847 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 324/891 (36%), Positives = 482/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLERKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECCAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED+VN I ++L + M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLNSQVQHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKNKHERLLAMVF-KKENERITLACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGRDIENLQAALNLAKN 839 >gi|326519084|dbj|BAJ96541.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1008 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 295/966 (30%), Positives = 458/966 (47%), Gaps = 96/966 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R F++FF+ H PSS ++P +DPTL+F N+GM FK +F G P Sbjct: 60 TAARVREVFIDFFKSKSHTPWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTASPDSQLGR 119 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ Sbjct: 120 LSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEGAIGYAWELLTQV 179 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L R+Y T + DE E+ +W K L ++++ DNFW M +TGPC Sbjct: 180 YKLPTDRIYATYFGGDEKAGLAPDTESKNIWLKY--LPNERVLPFGCKDNFWEMGDTGPC 237 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI FD+ + + IEIWNLVF+QF +++ LP +DTGMG Sbjct: 238 GPCTEIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNRESDGSLRSLPAKHVDTGMG 296 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDH 278 ER+ ++LQ K +NYD D+F L A Q+ G+ G + +RV+ DH Sbjct: 297 FERLTSILQNKMSNYDTDVFMPLFDAIHQLAGVGIQPYSGKVGSDDVGKVDMAYRVVADH 356 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 +R+ SF IADG P NEGR YVLRRI+RRA+ + L + L+ MG + Sbjct: 357 IRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVF 416 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395 PEL + I++ ++ E+ F T+ +G + ++ +L+G AF L+DT+G Sbjct: 417 PELKDNEKKIKDIIKDEEASFENTIAKGYERFKKAADAVKENGGAVLSGQDAFVLWDTYG 476 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL+ +D+ FN ++EE R +AR G + + + + Sbjct: 477 YPIDLTEVMAVDFGLS-VDMEGFNASMEEARQKARNARYKAGGKSI------VLDANATS 529 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + ++ P SS+VKAI E + A + +V Sbjct: 530 E------------LRNQGLASTNDSPKFQHEVHSSVVKAIYTGSEFIATASGDEDFGLVL 577 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL----RTEMSL 571 + T FYAE GGQ+ DTG G + +VQ A +H G + Sbjct: 578 ESTSFYAEQGGQIYDTGSIEGPSGSFTVNNVQVFAGY-VLHIGSFLEGPDSKALSVGDEV 636 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 +DY R +S NH+ TH+L+ AL +LG HV Q GS + P+ LRFD +H KP+ + Sbjct: 637 KCKVDYTRRTLISPNHTCTHMLNFALKEVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPED 696 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-------- 682 L+ IE VN I L V + + DA +G A+ G Y D VRVVS+ Sbjct: 697 LRKIEYIVNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLA 756 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLM 736 ++ S+ LCGGTH+S+T + ++SE I G+RRI A+T + +A Sbjct: 757 NPESKEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLAS 816 Query: 737 GQDEKLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQL--- 772 D + + + ++ G + ++ ++ RK + Sbjct: 817 SIDTDINEASKLDGATLEKKIGSIKNTLDAAAIPAARKADLRGNISKLEDQLRKAKKKMG 876 Query: 773 -IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGI 830 + ++ ++ ++ F + +D+ ++ + + +S IM+ Sbjct: 877 EENIQKAVKTVIDAAEATLSEGKPFCVAHVDVGLDTTAVREAVVKAMNRFKSLPIMVFST 936 Query: 831 SK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + KA + V D + F +D S L G GGGG+ +AQ G + ++ +A+ Sbjct: 937 DEASNKAVIYAGVPPDAPNGFKVLDWLTPSIAPLKGRGGGGKNGLAQGQGSDASRVKEAM 996 Query: 890 AGVASF 895 Sbjct: 997 ELATQI 1002 >gi|225683316|gb|EEH21600.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03] Length = 962 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 308/969 (31%), Positives = 463/969 (47%), Gaps = 103/969 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF+ NGH +PSSS++P +DPTL+F N+GM +K IF G +P + Sbjct: 17 VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD Sbjct: 77 HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG ER+ Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ KT+NYD D+F L + ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKTSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342 I+DG +P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + E L E+ F KTLDRG L + + + L+G ++LYDT G P+D+ Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL ID F + R RA+ S G G T + + ++ + Sbjct: 435 TQLMAEERGLK-IDNGEFEE----ARLRAKEASKGQGKLTKDVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 D ++S +KAI + V+ G++ ++ D+ Sbjct: 482 ------LLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVDSSKGIPEGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYGGYVLHTGFMKYGSFNVNDSVIAEYDE 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L+ IE Sbjct: 596 LRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIER 655 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 656 ISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDPR 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A K Sbjct: 716 WKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEA----HEVQRIAKEF 771 Query: 746 ASFLK-------VSQGNVVGRV--------------------------EEIWEEYRKLQL 772 LK + + ++ +++ E + Q Sbjct: 772 GERLKRFEKMELGPKKEMEAKLLQVDLNQLTISSVEKAQFREKFTQIHKKVLEGQKAAQK 831 Query: 773 IHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + +K+ L + + D + + + ++K + ++ ++ K+Q + + Sbjct: 832 LESKKALDAIMGYFQAPENNDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAAD 891 Query: 832 KE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KE K V E+L + D A A V+ GG GG+ ++ G + K D AI Sbjct: 892 KEAGKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKGPISIGNGTDAEKLDDAI 950 Query: 890 AGVASFLKK 898 +L+K Sbjct: 951 KAATEYLEK 959 >gi|306818740|ref|ZP_07452462.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239] gi|307700826|ref|ZP_07637851.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16] gi|304648426|gb|EFM45729.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239] gi|307613821|gb|EFN93065.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16] Length = 894 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 319/926 (34%), Positives = 492/926 (53%), Gaps = 64/926 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F NGHE+ PS SLI DP+++FT +GMVPF G E + Sbjct: 1 MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT Sbjct: 60 TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD ++++T+++ED+EA+++W K GL I ++ + FW + GP G C+EI Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGL 230 +D+G P G P +G+R++E+WNLVF +F + + K + + L + +IDTG+GL Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ+K N Y+ID +IQ +++++G KY + V+ RV+ DH+RS+ LI Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGYVLRR+MRRA+ RLLG E +M LLPA M +YPEL I Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E++ F +TLD G V+LD V L+G+ AF+L+DT+G PL + +I Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462 + +D F + + EQ+ RARA ++ +G + ++ L EK G T +F+GY Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGYTE 474 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + V I+Q G+ V A + +EV+ D+TPFYA Sbjct: 475 TSAP-----------------------AKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511 Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 EAGGQL D G + G + DVQ +G+ +H + G + TID + R Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ H++TH++H L LG +Q GS P +RFD +SKP+++ L+ +E N+ Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + NL V+ M E+A +GA A+ G KY VR+V + S CGGTHV Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSKEFCGGTHVPL 687 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG I L ++SE S+ +G+RRIEA+ G A + + + + + ++V R+ Sbjct: 688 TGAIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + E + + K +L + +L S I F+ +S +L+ L Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQL 807 Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 + K +S ++ L KE K +++ E ++ A L + A + GGG GG+ Sbjct: 808 RGRFSKTESVVVALGAKIKE-KPMMVVATNEAAREKGVKAGALVKAGAAAMQGGG-GGKD 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG G + + L++ Sbjct: 866 DLAQGGGAPGGSLENGLKAATIELQQ 891 >gi|317182490|dbj|BAJ60274.1| alanyl-tRNA synthetase [Helicobacter pylori F57] Length = 847 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 322/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPNIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVLKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECCTKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + +A Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I I+ ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI V+ + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 737 VDLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV- 791 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +++ A A A++LGG G GGR A +GG + K A++ + Sbjct: 792 KNVP--IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839 >gi|1673366|emb|CAA80381.1| cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] Length = 955 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P Sbjct: 16 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC+ Sbjct: 136 TDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG ER+ Sbjct: 194 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 +VLQ K +NYD D+F + ++ TG + + +RV+ DH+R+ SF Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 312 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P NEGR YVLRRI+RRA+ Y + L E L+ ++ MG + EL + Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I + ++ E+ F KTL +G+ + L+GD AF L+DT+G PLD+ Q Sbjct: 373 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 431 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + RGL +D+ FN+A+EE R R+R+ G D Sbjct: 432 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S K S +KAI +E + + V +V T FYAE Sbjct: 474 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 533 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ DTG G + +VQ + + + E G + ++ +DY+ R+ Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 593 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ IE VN Sbjct: 594 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653 Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690 I L V ++ +A G A+ G Y D VRVVS+ + + S Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEWSLLS 713 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746 S CGGTH+++T E ++SE I GIRR+ A+T + A L + + Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773 Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784 S LK ++ ++ + E RK Q A++ L+ +V+ Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 833 Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 F + +D+ ++ + + +K I++ KA V Sbjct: 834 TEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 893 Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V E D + + + L G G G+ +A G + ++ A+ +SF Sbjct: 894 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 949 >gi|295672445|ref|XP_002796769.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01] gi|226283749|gb|EEH39315.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01] Length = 962 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 308/969 (31%), Positives = 464/969 (47%), Gaps = 103/969 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF+ NGH +PSSS++P +DPTL+F N+GM +K IF G +P + Sbjct: 17 VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD Sbjct: 77 HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP IDTGMG ER+ Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRSLPNKHIDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L + ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342 I+DG +P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + E L E+ F KTLDRG L + + + L+G ++LYDT G P+D+ Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL ID F + R RA+ S G G T + + ++ + Sbjct: 435 TQLMAEERGLK-IDNGEFEE----ARLRAKEASKGQGKLTKDVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 D ++S +KAI + V G++ ++ D+ Sbjct: 482 ------LLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVNSSKDIPEGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELTVEDVQVYGGYVLHTGFMKYGSFNVNDSVIAEYDE 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L+ IE Sbjct: 596 LRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIER 655 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 656 ISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDPR 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A K Sbjct: 716 WKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEA----HEVQRIAKEF 771 Query: 746 ASFLK-------VSQGNVVGRV--------------------------EEIWEEYRKLQL 772 LK + + ++ +++ E + Q Sbjct: 772 GERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREQFTQIHKKVLEGQKAAQK 831 Query: 773 IHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + +K+ L + + D + + + ++K + ++ ++ K+Q + + Sbjct: 832 LESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAAD 891 Query: 832 KE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KE K V E+L + D A A V+ GG GG+ ++ G + +K D+AI Sbjct: 892 KEAGKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKAPISIGNGTDADKLDEAI 950 Query: 890 AGVASFLKK 898 +L+K Sbjct: 951 KAATEYLEK 959 >gi|217034055|ref|ZP_03439476.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10] gi|216943450|gb|EEC22904.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10] Length = 847 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 326/891 (36%), Positives = 482/891 (54%), Gaps = 55/891 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-VRMDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y +F GY+ S Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECSAKALGFFDS-------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + EA Q+V V+ ++TPFYAE GG +GD G + D I Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 K G+ +++ + + + + D R +++ +HSATHLL AL +LGS Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + LRFD +H K + EL+ +ED+VN I ++L M A G Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLTSQVEHMPLNQAKDKG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY + VRVVS + S LCGG HV +TG I I+ ES + +G+RRI Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 DL KI VN + ++ + D +K ++D L+ K + + M+ + ++ + V Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERIILACGVK 792 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG K A+ + Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKGIEKLQAALNLAKN 839 >gi|194386694|dbj|BAG61157.1| unnamed protein product [Homo sapiens] Length = 992 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 313/996 (31%), Positives = 473/996 (47%), Gaps = 118/996 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKI-------SGLSADKIIRITTNDNFWS 162 F + RLY+T + DE E ++W+ + L KI+ DNFW Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGTYLYSFVRLDDTKILPGNMKDNFWE 185 Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222 M +TGPCGPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK Sbjct: 186 MGDTGPCGPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKK 244 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHR 273 SIDTGMGLER+ +VLQ K +NYD DLF +A ++ TG + + +R Sbjct: 245 SIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYR 304 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332 V+ DH R+ + +ADG P N GRGYVLRRI+RRA+ A L + L+ + Sbjct: 305 VLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRCAHEKLNASRGFFATLVDVVVQS 364 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 +G A+PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYD Sbjct: 365 LGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYD 424 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ I +GL +D+ F + +R A+ S G G+G + I + Sbjct: 425 TYGFPVDLTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI- 478 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLC----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 + LR D + + V A+ ++ VEE +G Sbjct: 479 --------EELRARGLEVTDDSPKYNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTG 530 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGI 564 Q+ VV D+T FYAE GGQ+ D G + + + T + G +V H G Sbjct: 531 QECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGD 590 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 L+ + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 591 LKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAK 649 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE- 682 +++ ++K E+ N++I V T+ G A+ Y D VRVVS+ Sbjct: 650 GAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGV 709 Query: 683 ----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 710 PVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQ 769 Query: 733 SHLMGQDEKLKSLA---SFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRK 778 L + K L+ + +K +V + ++ E +++K +L + Sbjct: 770 KTLRKAESLKKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKS 829 Query: 779 LQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKE----------- 808 L+ ++DL ADV + + S +K Sbjct: 830 LKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKATQGPGSPPLGL 889 Query: 809 -----LKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAK 861 L + + ML + E K + L V ++ +R A + + + Sbjct: 890 ISSLALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG 949 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 L G GGG+ AQ+ G N +A+ SF + Sbjct: 950 -LMDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQ 984 >gi|227875429|ref|ZP_03993570.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243] gi|227843983|gb|EEJ54151.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243] Length = 894 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 317/926 (34%), Positives = 490/926 (52%), Gaps = 64/926 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F NGHE+ PS SLI DP+++FT +GMVPF G E + Sbjct: 1 MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT Sbjct: 60 TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD ++++T+++ED+EA+++W K GL I ++ + FW + GP G C+EI Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGL 230 +D+G P G P +G+R++E+WNLVF +F + + K + + L + +IDTG+GL Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ+K N Y+ID +IQ +++++G KY + V+ RV+ DH+RS+ LI Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGYVLRR+MRRA+ RLLG E +M LLPA M +YPEL I Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355 Query: 348 EETLRSEDERFGKTLDRGLVLLDG-VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E++ F +TLD G V+LD V L+G+ AF+L+DT+G PL + +I Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462 + +D F + + EQ+ RARA ++ +G + ++ L EK G T +F+GY Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGYTE 474 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + V I+Q G+ V A + +EV+ D+TPFYA Sbjct: 475 TSAP-----------------------AKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511 Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 EAGGQL D G + G + DVQ +G+ +H + G + TID + R Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ H++TH++H L LG +Q GS P +RFD +SKP+++ L+ +E N+ Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + NL V+ M E+A +GA A+ G KY VR+V + S CGGTHV Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSKEFCGGTHVPL 687 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG I L ++ E S+ +G+RRIEA+ G A + + + + + ++V R+ Sbjct: 688 TGAIGSLMVLGEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + E + + K +L + +L I F+ +S +L+ L Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVALAQNICGTKFICQSVSAGSVDDLRQAATQL 807 Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 + K +S ++ L KE K +++ E ++ A L + A + GGG GG+ Sbjct: 808 RGRFSKTESVVVALGAKIKE-KPMMVVATNEAAREKGVKAGALVKAGAAAMQGGG-GGKD 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ GG G + + L++ Sbjct: 866 DLAQGGGAPGGSLENGLKAATIELQQ 891 >gi|271967372|ref|YP_003341568.1| alanine--tRNA ligase [Streptosporangium roseum DSM 43021] gi|270510547|gb|ACZ88825.1| Alanine--tRNA ligase [Streptosporangium roseum DSM 43021] Length = 890 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 323/933 (34%), Positives = 478/933 (51%), Gaps = 82/933 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL FF++ GH ++PS+SLI DPTL+ +GMVPFK F GQ+KP + Sbjct: 1 MESAEIARRFLRFFEERGHTVVPSASLIAE-DPTLLLVPAGMVPFKPYFLGQQKPPFNRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D+D VG+T RH TFF+MLGNFSFG YFKE+AI LAW+LLTK Sbjct: 60 TSVQKCVRT----PDIDEVGKTTRHATFFQMLGNFSFGDYFKEQAIPLAWELLTKPESEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F Q RL++TVY +D+EA+ +W G+ +++I R DN+W M GP GPCSEI+ Sbjct: 116 GFGFPQERLWVTVYQDDDEAYGIWHDKVGVPSERIQRRGLEDNYWHMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 +D+G G G + RY+E+WN VFMQF+ + + LP S+DTGMGL Sbjct: 176 YDRGPEY-GRDGGPVADENRYLEVWNNVFMQFQLSAVRSKVDFDVAGELPARSVDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ERMA +LQ N Y+ID ++ + ++T +Y + V+ RVI DH+R+ L+AD Sbjct: 235 ERMAAILQGVDNIYEIDTTYKILDRAAELTKTRYGRDERADVSLRVIADHVRTGVMLVAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP-ALCTEMGSAYPELIQAKLLI 347 G+LP+NEGRGYVLRRI+RRA+ RLLG E MH L MG YPEL I Sbjct: 295 GVLPSNEGRGYVLRRILRRAIRNLRLLGAGEERYMHELTAVTIDVMGEQYPELKADAPQI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 + +E+ F TL G + D + + L G+ AF+L+DT+G P+D+ ++ Sbjct: 355 HGVIDAEEASFLGTLRTGTAIFDVAVEETRRKGKGTLAGEQAFQLHDTYGFPIDLTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464 +GL +D F + ++EQR RA+A + +G + ++ + EK G +F+GYD + Sbjct: 415 SEQGLK-VDEEGFRRLMKEQRDRAKADAAAKKTGNADISVFGQILEKTGRVEFLGYDQV- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V ++ G V A +G +VEVV +TPFYAE Sbjct: 473 ----------------------TAEAEVIGLLVGGAPVPAAGAGTEVEVVLGRTPFYAEG 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQL D G DG ++I DVQ G+ VH V G +R ID + RR +S Sbjct: 511 GGQLADQGVIRTDGAEVEIVDVQSPVSGVVVHRGKVRAGEIRVGDQAQAEIDVERRRAIS 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +H+ATHL+H LG +Q GS +P RFD T + + + L+ +ED VN ++ Sbjct: 571 RSHTATHLVHRGFRNALGETAAQAGSENSPGRFRFDFTAAGAVAPSMLRDVEDEVNAVLI 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +L V ++ +A A GA AL G KY + VR+V V G +S LCGGTHVSS+G+ Sbjct: 631 NDLTVNAFHTSQAEARAMGALALFGEKYGETVRIVEV-----GDYSRELCGGTHVSSSGQ 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + L+ ++ E+SI AG+RR+EA+ G A L + + L+ LK + + R++ I Sbjct: 686 LGLVKVLGEASIGAGVRRVEALVGLDAFRFLARESVLVAQLSEQLKARREELPERIDGIV 745 Query: 765 EEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 R + K + + + V+ ++ +L+ + ++ Sbjct: 746 TRLRAAEKELDKLRSAQVLAMAGEMAAGARDLHGVSVVTRRAPDGTSPDDLRKLALDVRG 805 Query: 819 KI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA----------RLSAKVLGG 865 + + +++V + V+ VV + R A L + Sbjct: 806 RFTGEQPAVVVVAGVPSDRPVVVAVVNDAGRGRGLKAGQLVGVAAKALGGGGGGKDDVA- 864 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 Q GG D A+ V + + Sbjct: 865 ----------QGGGARPEAIDDALVAVEQAIAQ 887 >gi|325282994|ref|YP_004255535.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP] gi|324314803|gb|ADY25918.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP] Length = 892 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 325/933 (34%), Positives = 484/933 (51%), Gaps = 97/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58 + IR FLEFF H +LP ++ DPT MFT +GM FK F G + Sbjct: 16 TTADIRRKFLEFFHSKEHLILPGHPVVAP-DPTTMFTVAGMQQFKPQFMGAPAVFSEGAS 74 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + VTT QKCVR +D++NVGRT RH + FEM+GNFSFG YFK AI AW+ LT + Sbjct: 75 KRVTTAQKCVRM----DDIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIAWAWEFLTSPE 130 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171 D R+Y+T+Y +D+EAF+ W + GL D I R ++NFW GPCGP Sbjct: 131 WMGFDPERMYVTIYVDDDEAFRYWTEDHGLPKDHIHRFGADENFWPADAPLKGPNGPCGP 190 Query: 172 CSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQER-----FILPKMS 223 CSEI++D+G E R++E+WNLVF +F++Q E LP + Sbjct: 191 CSEIYYDRGPKYGDDSWADYAKTRESARFLEVWNLVFPEFDRQGLDESGQPILAPLPFKN 250 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283 IDTGMGLER+A+V+Q+ + Y D+F LI +++G YEG + V+HRVI +H RS S Sbjct: 251 IDTGMGLERVASVVQDVPDFYTNDVFAPLIDKIVELSGRPYEGESSVSHRVIAEHARSVS 310 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 +IADG+ +N GRGYV+R+++RRA +A LLG EP + L+P + +M YPEL+ Sbjct: 311 MVIADGVALSNTGRGYVVRKVLRRASRHAYLLGLNEPSIYRLVPLVVEKMKDGYPELVAE 370 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + ++ +R+E+ERF +TL+ G+ L+G+L LG +++L+G+ AF LYDT+G PLD+ Q+ Sbjct: 371 QERVQAAIRAEEERFLRTLEGGIQRLNGLLEELGSEKVLSGEDAFTLYDTYGFPLDLTQE 430 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I G +D+ + ALE + ARA S S + + T+F+GYD L Sbjct: 431 IAAEHG-VDVDVTGYELALERAQETARAGSKFGKSELFDAG-AEAVQNLPQTEFVGYDQL 488 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 V A++ + V G K VV +TPFYAE Sbjct: 489 D-----------------------AEGEVLAVL------DSEVEGHK-TVVLSRTPFYAE 518 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GG++GDTG G ++ D +K +F+H V RG L + + + + Sbjct: 519 GGGEVGDTGRLEWAGGEGRVLDTRKIGG-VFLHEVEVLRGELSQGAGVRGVVGAER-AAI 576 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 +H+ATHLLH AL +LGS V Q GS + PD LRFD TH+ +++ EL ++E V+ + Sbjct: 577 QRHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHTAALSAEELAAVETLVSRWV 636 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHV 699 + N PV+ + M E+A A+GA AL G KY D VRVV VE + V S LCGG HV Sbjct: 637 SANFPVIWQEMPIEEAKAAGATALFGEKYGDTVRVVRVEGDVDYGGAAVSSMELCGGAHV 696 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 TG+I ++S+ ++ AG+RRIEA+ G+ A + + + +L AS L S + R Sbjct: 697 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATAWVRERLGRLNRTASLLNTSAEGLEDR 756 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVM 813 + + + + + A+ + QL ++ S +S V+ EL+ Sbjct: 757 IAGLQHQLKASEKEMAQVRAQLAEAQMGGGNSADTRELGGFKVASLKLSGVEGNELRGAA 816 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR-- 871 D L ++ + ++++ K V+ + + +A L G+ Sbjct: 817 DRLLEQSGADLVVIAS----DKGLVVKATKDAVAKGAHAGQLV-------------GKLA 859 Query: 872 ----------PHMAQSGGPNGNKADQAIAGVAS 894 P MAQ+G + A A+ S Sbjct: 860 AAGGGRGGGRPDMAQAGITDAAGALGALDTALS 892 >gi|294932634|ref|XP_002780365.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC 50983] gi|239890298|gb|EER12160.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC 50983] Length = 982 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 305/967 (31%), Positives = 458/967 (47%), Gaps = 92/967 (9%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----A 60 +R TF+ FF +K G L SS ++P NDPTL+F N+GM FK IF GQ + Sbjct: 30 VRDTFINFFVEKKGATFLKSSPVVPHNDPTLLFINAGMNQFKPIFLGQLDKDHPFYGVKR 89 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG +FK I AW+LLT+ F L Sbjct: 90 ATNTQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGNWSFGDFFKAEQIPWAWELLTEVFGL 149 Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 D RLY T Y D+EA LW K L D +I +NFW M +TGPCGP Sbjct: 150 DPARLYATYYGGDPKEPEVPADDEARDLWLKF--LPPDHVIPFGMKENFWEMGDTGPCGP 207 Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 CSEI +D + + IEIWNLVFMQ+ ++N LP +DTGMG E Sbjct: 208 CSEIHYDNVGGRDASA-LVNMDDPTVIEIWNLVFMQYNRENDGSLTRLPHPCVDTGMGFE 266 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV------TGMKYEGNNIVNHRVIVDHLRSSSFL 285 R+ L KT+NYD D+FK + A ++ + N V +RV+ DH+R+ + Sbjct: 267 RICAALTGKTSNYDTDVFKPIFAAIQEQIPGLRSYTGELTDNIDVGYRVVADHIRTLTVA 326 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 ++DG +P+NEGRGYVLRRI+RRA+ Y L L+PA+ +G A+PE++ + Sbjct: 327 LSDGAVPSNEGRGYVLRRILRRAVRYGTEKLNAPAGFFNKLVPAVVESLGEAFPEIVANQ 386 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 ++ + E+E+F +TL+RG+ + S ++L+G AF+L+ T G P D+ Q + Sbjct: 387 ADVQALIADEEEQFARTLERGIREFNSRASKTE-GKVLSGRDAFELFTTFGFPCDLTQVM 445 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 RG+ +D+ SF + E R +++ + + Y Sbjct: 446 AQERGMT-VDVQSFEEEFEAFRQKSKESNNFTMGSNLQLFADQ----------TNYLENE 494 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-----SGQKVEVVFDQTP 519 ++ SS + AI + ++ + + + +V TP Sbjct: 495 LKVPKTDETCKYAWDSAKGEGGQWSSQLCAIWDGKKWLDTIDVKSGYAQKTIGLVLSVTP 554 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE----RGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + G +V H L+ + ++ Sbjct: 555 FYAEQGGQIFDVGTIVDPLTGARFDVKNTQKFGQYVLHIGSMDSAVDAALKVGSEVRASV 614 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 DYQ R ++ NH+ATH+L+ AL +LG Q GS + P LRFD +KPIT+ +LK I Sbjct: 615 DYQRRALIAKNHTATHILNFALRQVLGDKCDQRGSLVDPSRLRFDFAQNKPITNEQLKEI 674 Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEY----------- 683 E N I ++L V + + G A+ G Y D VRVVSV Sbjct: 675 EQICNQQIQKHLNVFANDVQLAKAKDIRGLRAVFGETYPDPVRVVSVGEAIDTLLKETEV 734 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ-RARSHLMGQDEKL 742 + G S CGGTHV ++ EI I +E I GIRRI A TG A + + + Sbjct: 735 DFGHEFSIEFCGGTHVGNSQEIFKFVITAEEGIAKGIRRIVAATGPQAAVEASIKTTDLM 794 Query: 743 KSL--ASFLKVSQGNV-VGRVEEIWEEYRKLQLIHAKRKL-------------------- 779 + L A LK + + ++ E +++ L K L Sbjct: 795 EELNSAKALKGEVLDHAIAQLRNKLNEEKEVSLTAKKDMLCLLDDLKTQQIKEEKKKAKE 854 Query: 780 ----QLNVEDLSCHKIA--DVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGIS 831 + + I + F+ E+ D+K +++ +D++ KK+ + +V S Sbjct: 855 VQKQAAKIGEQLAESIGASEGKFLITQCDELLADAKAMQNAVDSIAKKLPELPVCIVSAS 914 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K +VLI V + + + +A + + + GG GGG P AQ +K + I Sbjct: 915 S-SKLAVLITVPKSMSKKVSAKEWLNVCLETC-GGKGGGSPMKAQGQSQEPSKVAETIEV 972 Query: 892 VASFLKK 898 + +K Sbjct: 973 SKQWAEK 979 >gi|218184221|gb|EEC66648.1| hypothetical protein OsI_32912 [Oryza sativa Indica Group] Length = 953 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 307/963 (31%), Positives = 457/963 (47%), Gaps = 95/963 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 S +R TF+ FF+ H PSS ++P +DPTL+F N+GM FK +F G P Sbjct: 9 ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ + Sbjct: 69 RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 128 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L R+Y T + DE E+ +W K L +K++ DNFW M +TGPCG Sbjct: 129 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 186 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PC+EI FD+ + + IEIWNLVF+QF ++ LP +DTGMG Sbjct: 187 PCTEIHFDRVGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 245 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDHL 279 ER+ ++LQ K +NYD D+F + A Q+ G + + +RV+ DH+ Sbjct: 246 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 305 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338 R+ SF IADG P NEGR YVLRRI+RRA+ + L + L+ MG +P Sbjct: 306 RTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFP 365 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396 EL + I++ ++ E+E F TL +G + + +L+G AF L+DT+G Sbjct: 366 ELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGTVLSGQDAFVLWDTYGY 425 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL+ +D F+ A+EE R +AR G S+ AT Sbjct: 426 PVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANAT- 476 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 ++ P S+VKAI E V A + +V + Sbjct: 477 ----------AQLRNQGLASTDDSPKYGYKDNDSVVKAIYTGSEYVSAASGDEDFGLVLE 526 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL--RTEMSLVLT 574 T FYAE GGQ+ DTG G +T+VQ A +H +G + Sbjct: 527 STSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFAGY-VLHMGSFTKGSKALSVGDKVACK 585 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +DY R ++ NH+ TH+L+ AL ILG HV Q GS + P+ LRFD +H KP+ +L+ Sbjct: 586 VDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRK 645 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682 IE VN I L V R + DA +G A+ G Y D VRVVSV Sbjct: 646 IESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPE 705 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---- 738 ++ S+ LCGGTH+ +T E ++SE I G+RRI A+T + A + Sbjct: 706 SKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSID 765 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IH 774 ++ + S+ S L + ++ GRV ++ +E RK + + Sbjct: 766 SEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEEN 825 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK- 832 ++ ++ ++ F + +D+ ++ + ++ + + IML + Sbjct: 826 IQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVIKVKDQ-KDLPIMLFSTDEA 884 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 KA + V + +D S L G GGGG+ +AQ G ++ +A+ Sbjct: 885 TNKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVA 944 Query: 893 ASF 895 Sbjct: 945 TQI 947 >gi|193656980|ref|XP_001950431.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] Length = 955 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 315/958 (32%), Positives = 468/958 (48%), Gaps = 77/958 (8%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + IR +++FF K GHE + SSS++P +DPTL+F N+GM FK IF G P Sbjct: 4 SAKEIRDRYIKFFIDKKGHEYVYSSSVVPVDDPTLLFANAGMNQFKPIFLGTVAPSSDMA 63 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 ++ QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK Q AW+ LT+ Sbjct: 64 KWKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTEICQWAWEFLTQ 123 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 EF L RLY+T + + D E +W K+ GL+ D II DNFW M ETGP Sbjct: 124 EFKLSPDRLYVTYFGGDKKSGLEPDLECKNIWLKL-GLAEDHIIPGNMKDNFWEMGETGP 182 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ +++ +EIWNLVFMQ+ + + LPK ID GM Sbjct: 183 CGPCSEIHYDRIGN-RLAADLVNQDDPDVLEIWNLVFMQYNRNQEGTLHNLPKKHIDCGM 241 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHL 279 G ER+ +V+Q+K +NYD DLF+ L A + T + +RV+ DH Sbjct: 242 GFERLVSVIQDKRSNYDTDLFQPLFVAIQNGTNAPPYEGKVGADDIDQKDMAYRVLADHA 301 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RRA+ YA L L+ + +G +P Sbjct: 302 RTLTIALSDGGSPDNTGRGYVLRRILRRAVRYATEKLNGKPGFFATLVNVVVDLLGDTFP 361 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + I E + E+E+F +TL RG LL+ + L D+++ G+VA+KLYDT+G P+ Sbjct: 362 EITKDPQQIIEIINEEEEQFLRTLSRGRNLLNRTILKLT-DKVIPGEVAWKLYDTYGFPV 420 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQF 457 D+ ++ +G ID+ ++ + + +A+ S G E I + T+ Sbjct: 421 DLTYLMVEEKGFT-IDMEAYEE----AKKKAQLISQNKVGGDKEVISLDVHALADLQTKG 475 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 I + V +S V +I + V E + Q+ ++ D+ Sbjct: 476 I---STTDDSPKYNYKAVSDDADAEYTFETCTSTVLSIRLINQFVNEVDTFQECGIILDK 532 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ+ D G + D + + G +H I+E G L+ +VL ID Sbjct: 533 TCFYAEQGGQIYDQGSMVKDEFTEFYVNNVQLRGGYILHVGILESGSLKVGDKVVLKIDE 592 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + RR + NH+ATH L+H L +LG +++Q GS + PD LRFD + +T ++ +E Sbjct: 593 KRRRFVMNNHTATHTLNHTLRVVLGDNLNQKGSLVAPDKLRFDFNNKAALTGDQVAKVEK 652 Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV-----------SVEYED 685 N++I +N V +I DA G A+ Y D VRVV E Sbjct: 653 LTNEVIKRNDTVYAKIAPLNDAKRIKGLRAMFDETYPDPVRVVSVGVTVDKLLTDPEGNS 712 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 G S CGGTH+ TG + I+SE +I GIRRI A+TG A +E K + Sbjct: 713 GLETSVEFCGGTHLHKTGHMECFTILSEEAISKGIRRIVAVTGPEATKAYNRGEELKKDV 772 Query: 746 ASF------LKVSQGNVVGRVEE------IWEEYRK----LQLIHAKRKLQLNVEDLS-- 787 L + + ++ + + EE R L+ A+ + + V S Sbjct: 773 MKLDSKDVNLSKAIIDTQDKINKSVIPYWVKEELRSVLSGLKKGIAEEERKQLVAQASEV 832 Query: 788 CHKIA-------DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKK-ASV 838 I D + + ++K + +V+ L+ + + IML+ E K Sbjct: 833 AKSIKTKICSESDKTVFIYKLDVGSNTKVMDAVLKLLKADMPNISIMLLSEDTEGKRIYC 892 Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 VV++DL + A A + G GGG+ AQ+ G N +Q I+ F Sbjct: 893 QCVVSKDLNKKGLMANKWVTKIASCIN-GKGGGKADTAQASGCNETGVEQLISIGEQF 949 >gi|188528029|ref|YP_001910716.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470] gi|205830066|sp|B2UV04|SYA_HELPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|188144269|gb|ACD48686.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470] Length = 847 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 322/892 (36%), Positives = 481/892 (53%), Gaps = 57/892 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG T+ Sbjct: 2 DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + Sbjct: 61 QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKSKD 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183 LYI+V+++D+EA KLW+K + ++I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K NN Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 +D LF L++ + + Y + RV+ DH R+ +FL+A G+ EGRGYVLRR Sbjct: 239 FDSSLFAPLMEEISDLASLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +TL+ Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G +D+ F ++ Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQ R++A G + + ++ Y F+GY+ Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECC----------------- 457 Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + V + + +A Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 458 ------AKVLGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAA 511 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 I K G+ +++ + + + + D R +++ +HSATHLL AL +LG Sbjct: 512 IVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A Sbjct: 570 SHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDK 629 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+RR Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ G+ ++++LK+ LK + +V+ + ++ E + Q Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APV 735 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +L KI VN + ++ + D +K ++D L+ K + + M+ + ++ ++ V Sbjct: 736 SVELPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A A A++LGG G GGR A +GG + A+ + Sbjct: 792 KNAP---IKANVWANEVAQILGGKG-GGRGDFASAGGRDIENLQAALNLAKN 839 >gi|226288201|gb|EEH43713.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18] Length = 962 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 307/969 (31%), Positives = 463/969 (47%), Gaps = 103/969 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF+ NGH +PSSS++P +DPTL+F N+GM +K IF G +P + Sbjct: 17 VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD Sbjct: 77 HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG ER+ Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L + ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342 I+DG +P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + E L E+ F KTLDRG L + + + L+G ++LYDT G P+D+ Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RGL ID F + R RA+ S G G T + + ++ + Sbjct: 435 TQLMAEERGLK-IDNGEFEE----ARLRAKEASKGQGKQTKDVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 D ++S +KAI + V+ G++ ++ D+ Sbjct: 482 ------LLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVDSSKDIPEGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYGGYVLHTGFMKYGSFNINDSVIAEYDE 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L+ IE Sbjct: 596 LRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIER 655 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 656 ISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDPR 715 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A K Sbjct: 716 WKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEA----HEVQRIAKEF 771 Query: 746 ASFLK-------VSQGNVVGRV--------------------------EEIWEEYRKLQL 772 LK + + ++ +++ E + Q Sbjct: 772 GERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREKFTQIHKKVLEGQKAAQK 831 Query: 773 IHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + +K+ L + + D + + + ++K + ++ ++ K+Q + + Sbjct: 832 LESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAAD 891 Query: 832 KE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KE K V E+L + D A A V+ GG GG+ ++ G + K D AI Sbjct: 892 KEAGKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKGPISIGNGTDAEKLDDAI 950 Query: 890 AGVASFLKK 898 +L+K Sbjct: 951 KAATEYLEK 959 >gi|317157868|ref|XP_001826622.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40] Length = 1015 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 305/969 (31%), Positives = 471/969 (48%), Gaps = 95/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S+R F+++FQKNGH + S+ ++P +DPTL+FTN+GM FK+IF G P Sbjct: 66 TAKSVRDAFIQYFQKNGHTFVASAPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAN 125 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+L+TK Sbjct: 126 LKSAVNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKI 185 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD +RLY+T ++ D EA +LW K G+ D I+ DNFW M + GPC Sbjct: 186 YGLDPQRLYVTYFEGSKEGGLSPDLEAKELW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 244 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ +++ + LP +DTGMG Sbjct: 245 GPCSEIHYDRI-GGRNASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGMG 303 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ K++NYD D+F L Q + + G++ +RV+ DH+R Sbjct: 304 FERLVSVLQNKSSNYDTDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHVR 363 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG+ P NEGRGYV+RR++RR YAR E ++P L +MG +P Sbjct: 364 TLTFAISDGVAPNNEGRGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMFP 423 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 E+ + + + E L E+ F KTLDRG + + D+ L+G ++LYDT G Sbjct: 424 EVKRKQQDVMEILDEEEISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFGF 483 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D RSRA+ S G + + + + Sbjct: 484 PVDLTRIMAEERGLRIDDTEFEEA-----RSRAKEASKGQKKAAADTVKLDVHDLG---- 534 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K K + +++ VKAI E+ G ++ + Sbjct: 535 ----------KLEKMNDVPKTNDSAKFDRGNITAQVKAIYHGKSFHLSTEQIPEGDQLGL 584 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG + DG + G +H ++ G L ++ Sbjct: 585 ILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYAGYVLHTGFMKYGSLSVGDEVIC 644 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H P+T +L+ Sbjct: 645 EYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKDLE 704 Query: 634 SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 IED + I QN V + SG A+ G Y D VRVVSV Sbjct: 705 RIEDISTEYIRQNCAVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILKNV 764 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 765 KDPRWEKVSIEFCGGTHVQKTGDIKELVILEESGIAKGIRRIIAVTGEDAHEVQRVALGF 824 Query: 737 --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772 +++ K + L + V + ++I + + Q Sbjct: 825 EKRLDRLEAMALGPEKEQDAKQIQVDLSQLLISAVQKSRFRERFAHINKQIIDSQKAQQK 884 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830 + +K+ L+ + D +++ + ++K + ++ ++ K+Q + +L Sbjct: 885 LESKKALEAITSYFENPENKDKSWLVARLPISANAKAVSESLNHVKSKLQDKTVYVLAAD 944 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + + +++ + D +A D A + + +GG GG P G N +K D+AI Sbjct: 945 SNQGRVVHGCYMSKAISDQGASASDWAAIVSTAVGGKAGGKGPTS-IGNGTNPDKTDEAI 1003 Query: 890 AGVASFLKK 898 A + +L K Sbjct: 1004 ALASDYLSK 1012 >gi|19114552|ref|NP_593640.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted) [Schizosaccharomyces pombe 972h-] gi|3183171|sp|O13914|SYA_SCHPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2330773|emb|CAB11162.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted) [Schizosaccharomyces pombe] Length = 959 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 295/961 (30%), Positives = 462/961 (48%), Gaps = 89/961 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 + IR TFL++F+ +GH ++PSSS+IP +DPTL+F N+GM FK IF G P Sbjct: 12 ANEIRRTFLKYFEDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKL 71 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI +AWDLLT + Sbjct: 72 KRACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTNVY 131 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T + + D EA +LW G+ ++I + DNFW M + GPCG Sbjct: 132 GLKKDQLYVTYFGGHEESGLEPDLEARQLWLD-IGIDESRVIPGSLKDNFWEMGDQGPCG 190 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ + + +EIWN+VF+QF ++ LP +DTGMG Sbjct: 191 PCSEIHYDRIGNRT-VPELVNMDDPNVLEIWNIVFIQFNREKDGSLRPLPNRHVDTGMGF 249 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281 ER+ +V+Q KT+NYD D+F + +++T + +RV+ DH+R+ Sbjct: 250 ERLVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYRVVADHVRT 309 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSAYPE 339 +F I+DG +P NEGRGYVLRRI+RR Y R L + +MG +PE Sbjct: 310 LTFAISDGGVPNNEGRGYVLRRILRRGARYVRKKFGVPIGNFFSRLSLTVVEQMGDFFPE 369 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLP 397 L + + E L E+E F +TLDRG + + + + L G+ ++LY+T+G P Sbjct: 370 LKRKVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTPSKTLQGNDVWRLYETYGFP 429 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + G+ ID F A + ++ S G SG + Sbjct: 430 VDLTHLMAEEAGIK-IDEPGFEAAQARSKEISKQASKGGSSGDDLLVL------------ 476 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEVV 514 D+ K D + + S++K I +G + E SG+++ ++ Sbjct: 477 ---DVHALGALSKMDDIPETDDVFKHNSVSLKSVIKGIYHKGGFQKSTEGFNSGEQLGLL 533 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ DTG + DG+ + G +H +E G L S+V Sbjct: 534 LDRTNFYAEQGGQEYDTGHIVIDGVADFRVTNVQVYAGYVLHTGFLEYGNLTVNDSVVCE 593 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D R L NH+ TH+L+ AL LG + Q GS ++ + LRFD ++ I +L Sbjct: 594 YDEIRRWHLMNNHTVTHILNLALRNTLGDGIDQRGSLVSQEKLRFDFSYKSSIPIDKLLL 653 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682 +E+ N++I NL V ++ + A +G A+ G Y D VRVV + Sbjct: 654 VENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDIDTLLQEPK 713 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736 D +S CGGTH +GEI I+ E+ I GIRRI A+T A Sbjct: 714 KPDWTKYSIEFCGGTHCDKSGEIKDFVILEENGIAKGIRRIVAVTSTEANRVSRLANEFD 773 Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIH--A 775 ++ +LK ++ L V + + R+ +I ++ ++ A Sbjct: 774 ARIAKLEKMPFSPAKEAELKKISVDLSKLVVAAVRKHAMKERIAKITKQVQEHVKAINAA 833 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 ++K +NV + D++F+ + + K L + +K ++ I L+ S + Sbjct: 834 EQKEVVNVVTEYFKENPDMSFVVAKVPISANPKALSFALTYAKKNLKDKSIYLLA-SDDT 892 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K + +V+ + + + + ++ + GG GG+ Q G D A+ Sbjct: 893 KVAHACLVSPEAMKKLTPQEWSQKVCHSI-GGRSGGKGDTCQGVGDKPLSIDVAVEEAIE 951 Query: 895 F 895 F Sbjct: 952 F 952 >gi|182415646|ref|YP_001820712.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1] gi|205830166|sp|B1ZZ40|SYA_OPITP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|177842860|gb|ACB77112.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1] Length = 937 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 306/972 (31%), Positives = 452/972 (46%), Gaps = 126/972 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 + IR +FL+FF + GH ++PSSSL+P + P L+FTN+GM F IF G P Sbjct: 1 MTSAEIRQSFLDFFARQGHTIVPSSSLLP-DSPGLLFTNAGMNQFVPIFLGDRAPDVSKW 59 Query: 59 --------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110 QKC+RAGGKHNDL++VG HHT FEMLGN+SFG YFK+ +I Sbjct: 60 AGARPAKDTRAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWG 119 Query: 111 WDLLTKEFDLDQRRLYITVYDE----------DEEAFKLWK---KISGL-SADKIIRITT 156 W+L+TK + + +RL+ TVY D+EA+ +W K GL A I+ Sbjct: 120 WELITKVWGIPAKRLFATVYSPDKSKNDPSDFDQEAYDIWAGVFKKEGLDPAVHIVHGNK 179 Query: 157 NDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214 DNFW M +TGPCGPCSEI F+ + G + R IEIWN VF+QF Sbjct: 180 KDNFWMMGDTGPCGPCSEIHFNLLPSDDEVEGRKLVNAGVPRCIEIWNHVFIQFNANADG 239 Query: 215 ERFILPKMSIDTGMGLERMATVLQEK---------TNNYDIDLFKHLIQASEQVTGMKY- 264 L +DTGMG ER+A + +NY+ D+F L E+++ Y Sbjct: 240 TFSPLAAKHVDTGMGFERVAGIYATTKGFKDFSRDPSNYNADVFAPLFAKIEELSKKTYN 299 Query: 265 ------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312 + N + RV+ DH R S IAD ILP NEGR YV+RRI+RR + Y Sbjct: 300 GTVPTRREGLGEQENIDIAFRVLADHARCVSCAIADNILPGNEGRNYVIRRILRRGILYG 359 Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372 + L L+ + +G+ +PEL + + +I +RSE+E FG+TL++GL L + Sbjct: 360 KKLNLATGFFEQLVAPVVESLGAVFPELKERQDIIRRVIRSEEESFGRTLEKGLQLFNEG 419 Query: 373 LSHLGKDEIL----------------------NGDVAFKLYDTHGLPLDIMQDILCARGL 410 L + G F+LYDT+G P+D+ Q + RGL Sbjct: 420 AKLLLDAHPIKGQADVPGVGTITNIGGVTRFLGGKFVFRLYDTYGFPVDMTQLLATERGL 479 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 A + F +++Q+ R+RA + + E T+FIGYD L Sbjct: 480 AVNMVE-FASEMQQQQDRSRAAQKKEVIVAATEGDNT--EAAQPTKFIGYDRLTA----- 531 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ++++ + + + +VFDQTPFYAE GGQ GD Sbjct: 532 ---------------------------DAQVLDVVKTDKDLFLVFDQTPFYAEMGGQTGD 564 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRTEMSLVLTIDYQNRRQLSI 585 G DG I K G F+H + L + RR +S Sbjct: 565 HGVVKIDGQTFAILATVKDKAGRFLHKLAPACAADVARLNPVGKKAALGVSPLARRAISR 624 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSA HL+H AL LG+HV Q G+ T + +RFD TH + +T ++ +E VN I Sbjct: 625 HHSAEHLVHWALRKTLGTHVRQAGTSKTKERMRFDFTHFEALTPEQIAEVERLVNSKILS 684 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N V D G A G KY VRVV + +S LCGGTHVS+T EI Sbjct: 685 NDKVEAYETEF-DKKPEGTLAFFGEKYGKIVRVVDIGG-----YSRELCGGTHVSTTSEI 738 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L IV+E +I AG RR+EA+ GQ A + + LK++ L +V +++ + Sbjct: 739 GLFKIVAEMAIAAGTRRLEAVAGQAAYDFVEEHETALKAVTHKLNAGPQDVAQKLDSLLA 798 Query: 766 EYRKLQLIHA--KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKI 820 ++L+ ++K + D K + F++ +S + L+S+ + K+ Sbjct: 799 HQKELEKKLKAYEQKAAAGLADELAAKATARDGLKFVTATVSIDNQDALRSLGSQVLHKL 858 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G++ L + +AS+++ + + A + + +GG G GG+P A GG Sbjct: 859 GEGVVTLGAALGD-RASLVVYCSPAAIKAGHQAGKIVGELSTKIGGKG-GGKPDFAMGGG 916 Query: 880 PNGNKADQAIAG 891 + +K + Sbjct: 917 KDPSKLADVLKQ 928 >gi|255713044|ref|XP_002552804.1| KLTH0D01848p [Lachancea thermotolerans] gi|238934184|emb|CAR22366.1| KLTH0D01848p [Lachancea thermotolerans] Length = 955 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 297/964 (30%), Positives = 466/964 (48%), Gaps = 92/964 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S++R+TF+EFF++ H + SS +IP +DPTL+F N+GM +K IF G P Sbjct: 10 TASNVRSTFMEFFKQREHTFVASSPVIPYDDPTLLFANAGMNQYKPIFLGTVDPSSDYYS 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK Sbjct: 70 LKRAMNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKDAIQYSWELLTKV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + RLY+T ++ D+ EAF+LWK G+S D I+ DNFW M + GPC Sbjct: 130 YGIPSERLYVTYFEGDQKQGLEPDLEAFELWKS-VGVSEDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WN+VF+Q+ ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPNVLEVWNIVFIQYNREQNGTLKSLPSKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F+ L +++TG + +RV+ DH+R Sbjct: 248 FERLVSVLQDVKSNYDTDVFQPLFARIQEITGARPYEGKFGAEDADGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L + + +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSSLAPTLIDQSKAMFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396 E+ + + E L E+ F KTLDRG L + + D+ L+G ++LYDT+G Sbjct: 368 EINRDPSYLFEILDEEEASFAKTLDRGEKLFEKYAQAAAQTKDKTLDGLQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L Sbjct: 428 PVDLTELMAEEKGLK-IDGPGFEKAKQESYEASKKGGKKSASDLIKLEVHEL-------- 478 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + P + + +IV I V+E G++ V+ Sbjct: 479 ----------STLNSENVPKTDDSPKYESANIEAIVLRIFDGENFVDEISEVGKQYGVIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D T FYAE GGQ D G + D + + + G H + G L ++ + Sbjct: 529 DSTCFYAEQGGQEYDMGTLVIDDVAEFSVENVQLYNGYVFHTGQLGEGKLSVGDKVIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG+ V Q GS + P+ LRFD +H K + ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKKAVALDELKEV 648 Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E N+ I NLPV + + S A+ G Y D VRVVSV Sbjct: 649 ERICNEQIKANLPVYYKNVPLDLARKISSVRAVFGETYPDPVRVVSVGKPVDDMLVDPTS 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737 E+ +S CGGTHVS TG+I I+ ES I G RRI A++G A Sbjct: 709 EEWQKYSVEFCGGTHVSKTGDIKEFVIIEESGIAKGTRRIVAVSGSEAYEVQRIANKFDS 768 Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 +++KLK L L V++ + + +I + + AK++ Sbjct: 769 DLIAAEKMPFSPLKEKKLKELGVALGQLSISVVTKQELKDKFAKIEKVVKDEIKTRAKKE 828 Query: 779 LQLNVEDLS--CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 ++ V+++ + + +F+ I+ ++K + ++ ++ + I L + + Sbjct: 829 IKQTVDEVKNYFAENQEASFLVKYINIPTNAKAITEAVNHMKTSAKDKSIYLFT--GDDR 886 Query: 836 ASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + +++ L + L + + GG GG+ ++ Q G + A+ V + Sbjct: 887 VAHGCYISDVALEKGIDGRALLNTVSSNI-GGKAGGKGNVFQGVGDKPEGIETAVKEVEN 945 Query: 895 FLKK 898 ++ Sbjct: 946 LFRE 949 >gi|291229512|ref|XP_002734712.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii] Length = 974 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 299/976 (30%), Positives = 468/976 (47%), Gaps = 98/976 (10%) Query: 7 IRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 IR F++FF+ HE +PS+S++P +DPTL+FTN+GM FK IF G P + Sbjct: 8 IRQGFIDFFRNKKGLEHEFVPSNSVVPLDDPTLLFTNAGMNQFKPIFQGVVDPNSDMAKW 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ ++AW+LLT + Sbjct: 68 VRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCEMAWELLTDVW 127 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T + DEE ++W GL ++++ + DNFW M + GPCG Sbjct: 128 KLPKERLYVTYFGGDEKMGLGPDEECKQIWID-IGLPPERVLPFSMRDNFWEMGDVGPCG 186 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI FD+ + + +E+WNLVFMQF ++ LPK +ID GMGL Sbjct: 187 PCSEIHFDRI-GGRDATHLVNMDDPNVLELWNLVFMQFNREPDGSIRPLPKKNIDCGMGL 245 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281 ER+ +VLQ K +NYD D+F A + TG++ + +RV+ DH+R+ Sbjct: 246 ERVISVLQGKMSNYDTDIFTPFFDAIHKGTGVREYQGKVGSEDTDGIDMAYRVVADHIRT 305 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + I+DG P N GRGYVLRR++RR + YA L L+ + +G A+P + Sbjct: 306 LTIAISDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAPSGFFASLVQVVLDTLGDAFPGI 365 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + L+ + + E+ +F KTL+RG +L ++ L ++L G A+ LYDT+G P+D+ Sbjct: 366 KKDPQLVIDIINEEEAQFLKTLNRGHRVLQRTINKLE-TKVLPGKAAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL--KEKYGATQFI 458 Q + GL + ++ R S G GSG + I + + T+ + Sbjct: 425 TQLMAEENGLNIDMGEYEEEKKKKLR---FLLSQGKGSGVDDTIGLDVHAISELQDTRKV 481 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + + ++ + N + + V A+ + + V E +G + ++ D+T Sbjct: 482 -----SATDDSPKYSYTYDEQNSKYVFNAIVATVIALRKDKQFVSEVDNGDECGMLLDKT 536 Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVH---HAIVERGILRTEMSLV 572 FYAE GGQ+ D G I ++T+VQ K I A+ G L+ + Sbjct: 537 CFYAEQGGQIWDEGFMEKENNPDIEFKVTNVQVKGGYILHIGKLSAVDSEGKLKVGDKMK 596 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L ID RR + NH+ TH+L++AL +LG Q GS + PD LRFD T +T+ ++ Sbjct: 597 LYIDEARRRPIMSNHTGTHMLNYALRKVLG-EADQKGSLVAPDKLRFDFTAKGAMTTEQV 655 Query: 633 KSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682 +S E N+++ ++ PV + G A+ Y D VRV+S+ Sbjct: 656 QSAEQITNEMVQKSQPVYAKNSPLAVAKAIQGLRAVFDEVYPDPVRVISIGIPVEDMEAD 715 Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-- 738 G S CGGTH+ ++G I IV+E +I GIRRI AITG A+ + Sbjct: 716 PSGPAGATTSIEFCGGTHLLNSGHIGPFVIVTEEAIAKGIRRIVAITGDDAQKAINRADM 775 Query: 739 -DEKLKSLASFLKVS-------QGNVVGRV---------------------------EEI 763 +E++ L +K + + + ++I Sbjct: 776 LEEEIDKLTQKIKDNSTKQVYMPKELSKEIVSIGDDLNVAIVPQWRKDGMRKKLKDLKKI 835 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ K + + ++ + L K + + ++ +SK L + + + Sbjct: 836 MDDLDKARKAAIIQNVKEMTKKLIEEKPNQPLVVMTLDADSNSKALDAALKEYRNLSPQT 895 Query: 824 IIMLVGISKEK-KASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ML + +E K L V E + A + R + L G GGG+ AQ+ G N Sbjct: 896 AAMLFSVDRENRKIICLCHVPQEGIAKGLKAGEWVRHVSSSLN-GKGGGKDSSAQASGDN 954 Query: 882 GNKADQAIAGVASFLK 897 N D+A F + Sbjct: 955 INGLDEASKLAKEFAE 970 >gi|298253344|ref|ZP_06977136.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1] gi|297532739|gb|EFH71625.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1] Length = 894 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 314/928 (33%), Positives = 487/928 (52%), Gaps = 67/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F KNGH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF ++ N + + L + +IDTG GL Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G+KY NN + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG +P++ L P + M +YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKSAMEPSYPELNDTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404 E E++ F +TL++G +LD + K+ I+ G AF L+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDFAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463 +G+ +D F + + EQ+ RARA +L ++ +K+ F+GY Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGYTDF 472 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522 S V AIV+ G+ V+ + VE++ D+TPFYA Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVSAPANVEIILDRTPFYA 509 Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ+ D G I D + ++ DVQ+ + + VH + G L + ID R Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L+ +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +L VV + M +DA GA L G KY D VRVV + S LCGGTH S Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEIGD----GWSRELCGGTHAKS 685 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + +V R+E Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLE 745 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIAD----VNFMSHIISEVDS-KELKSVMD 814 + + + A E + ++ + V + S L+ + Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEVKNSNEKVKLALKNVGNFGSFDALRKTVL 805 Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 ++ ++ ++ L G++++ + + + E A DL R ++KVLGGGG GG Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVRTASKVLGGGG-GG 864 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 +P AQ GG + +K D+A+ S + K Sbjct: 865 KPDFAQGGGTDASKLDEALEAAKSEVAK 892 >gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 963 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 302/964 (31%), Positives = 459/964 (47%), Gaps = 97/964 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P Sbjct: 16 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC+ Sbjct: 136 TDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG ER+ Sbjct: 194 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 +VLQ K +NYD D+F + ++ TG + + +RV+ DH+R+ SF Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 312 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P NEGR YVLRRI+RRA+ Y + L E L+ ++ MG + EL + Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + I + ++ E+ F KTL +G+ + L+GD AF L+DT+G PLD+ Q Sbjct: 373 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 431 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + RGL +D+ FN+A+EE R R+R+ G D Sbjct: 432 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S K S +KAI +E + + V +V T FYAE Sbjct: 474 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 533 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ DTG G + +VQ + + + E G + ++ +DY+ R+ Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 593 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ IE VN Sbjct: 594 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653 Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690 I L V ++ +A G A+ G Y D VRVVS+ + + S Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLS 713 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746 S CGGTH+++T E ++SE I GIRR+ A+T + A L + + Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773 Query: 747 ----------SFLKVSQG----------NVVGRVEEIW--------EEYRKLQLIHAKRK 778 S LK ++ ++ + E RK Q A++ Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQVISSFSLTNEVRKAQKKIAEQN 833 Query: 779 LQLNVE----DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L+ +V+ F + +D+ ++ + + +K I++ Sbjct: 834 LKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDEST 893 Query: 834 KKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 KA V V E D + + + L G G G+ +A G + ++ A+ Sbjct: 894 NKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDM 953 Query: 892 VASF 895 +SF Sbjct: 954 ASSF 957 >gi|156371401|ref|XP_001628752.1| predicted protein [Nematostella vectensis] gi|156215737|gb|EDO36689.1| predicted protein [Nematostella vectensis] Length = 961 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 297/970 (30%), Positives = 463/970 (47%), Gaps = 94/970 (9%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 IR F++FF +K+ H +PSSS+IP DPTL+F N+GM +K+IF G P Sbjct: 6 TAKDIRRKFIDFFVEKHNHTFVPSSSVIPHEDPTLLFANAGMNQYKSIFLGTVDPNSDMS 65 Query: 59 --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG +FK+ AI AW+ LT+ Sbjct: 66 KLKRAVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDFFKKGAIDFAWEFLTE 125 Query: 117 EFDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T + + D E W GL +++ +DNFW M +TGPCG Sbjct: 126 VLKVPKERLYVTYFGGCDGVECDNETKDYWIGK-GLDPSRVLPFGMSDNFWEMGDTGPCG 184 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ + + +EIWNLVF+QF ++N LP +DTGMGL Sbjct: 185 PCSEIHYDRIGGRDAKA-LVNMDDPTVLEIWNLVFIQFNRENDGTLKTLPSQHVDTGMGL 243 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281 ER+ +++Q K +NYD DLF Q TG++ G + +RV+ DH+R+ Sbjct: 244 ERLVSIIQGKMSNYDTDLFTPFFDKIHQATGVQPYGGQVGLADQNGIDMAYRVVADHIRT 303 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + ++DG P N GRGYVLRRI+RR + Y+ L + L+ + +G +PEL Sbjct: 304 LTVAMSDGGKPDNVGRGYVLRRILRRCIRYSIEKLNASPGFTASLVSVVIDTLGEFFPEL 363 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + + + E+ +F KTL RG L + S + D + GDVA++LYDT+G P+D+ Sbjct: 364 NKDPQQVMDVINEEEVQFLKTLARGRRLFERTASKIT-DGTIPGDVAWRLYDTYGFPVDL 422 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RGL + RA+ + G S + + I + Sbjct: 423 TELMAEERGLRVDMEKYEEA-----KRRAQEIARGKDSASDDAITLDVHLL--------- 468 Query: 461 DLLRG-----SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D L+ + VS +KA++ + E V E G+ ++ Sbjct: 469 DKLQNVMNLPPTIDLPKYSYSSDALGSYVFQPVSGTIKALLHEKEFVNEVPGGEHCGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 DQT FYAE GGQ+ D G + ++ + + G +V H G +R ++ Sbjct: 529 DQTSFYAEQGGQIYDEGFMTKEGDEDVEFRVINVQVHGGYVLHVGALEGAIRVGDTMNCL 588 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID RRQ NH+ATH+L+ AL LG Q GS + P+ LRFD T +T ++KS Sbjct: 589 IDEDRRRQCMNNHTATHILNFALRRTLG-EADQRGSLVAPNRLRFDFTAKGAMTPEQVKS 647 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------YE 684 E +I+ +LPV + + A G A+ Y D VRVVS+ + Sbjct: 648 TELFSKEIVTSDLPVFAKEVALAQAKDVQGLRAIFDEVYPDPVRVVSIGASFDELQPNPQ 707 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR---ARSHLMGQDEK 741 G +S CGGTH+ + + +VSE +I GIRRI A+TG A H + + Sbjct: 708 AGYKYSIEFCGGTHLQRSSHMETFVLVSEEAISKGIRRIVALTGPEGLKAEKHCEALEAR 767 Query: 742 LKSLASFLKVSQGNVVGR-----VEEIWEE-----------------YRKLQLI--HAKR 777 ++ + ++ N+ + + + E+ +K++ I +A + Sbjct: 768 VEKIRKEVEAESKNLRVKEAGQEITRLIEDINAAVISAWKKEEMRQTLKKVKKIVDNASK 827 Query: 778 KLQLNVEDLSCHKIA-------DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVG 829 +Q + + K D + + + K L + M + ++L+ Sbjct: 828 AMQAALMTSAADKAKAMITAEPDRTVVVELFDAGSNQKVLDAAMKQFKNLSPLTAVLLLS 887 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +E KK L V +D+ + A + A +L GG GG+ AQ+ GPN D+ Sbjct: 888 VDQENKKIICLSQVPKDVTKKGLKADEWTGAIADIL-GGKSGGKEMSAQASGPNVGSIDK 946 Query: 888 AIAGVASFLK 897 A++ F Sbjct: 947 ALSEAKQFAN 956 >gi|297242856|ref|ZP_06926794.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD] gi|296889067|gb|EFH27801.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD] Length = 894 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 314/928 (33%), Positives = 484/928 (52%), Gaps = 67/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F KNGH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF ++ N + + L + +IDTG GL Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G+KY NN + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG +P++ L P M +YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNDTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404 E E++ F +TL++G +LD + K+ ++ G AF L+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463 +G+ +D F + + EQ+ RARA +L ++ +K+ F+GY Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKSLEKPIDFLGYTDF 472 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522 S V AIV+ G+ V+ + VEV+ D+TPFYA Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVTAPANVEVILDRTPFYA 509 Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ+ D G I D + ++ DVQ+ + + VH + G L + ID R Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGSPVNTNIDQVRRA 569 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L+ +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +L VV + M +DA GA L G KY D VRVV + S LCGGTH S Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEIGD----GWSRELCGGTHAKS 685 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + + R+E Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELAERLE 745 Query: 762 EIWEEYRKLQLIHAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814 + + + A E D + + V + S L+ + Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEAKNSNEKVKLALKNVGNFGSFDALRKTVL 805 Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 ++ ++ ++ L G++++ + + + E A DL R ++KVLGGGG GG Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGFGAKAGDLVRTASKVLGGGG-GG 864 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 +P AQ GG + +K D+A+ S + K Sbjct: 865 KPDFAQGGGTDASKIDEALEAAKSEVAK 892 >gi|283782871|ref|YP_003373625.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05] gi|283441998|gb|ADB14464.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05] Length = 894 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 314/928 (33%), Positives = 487/928 (52%), Gaps = 67/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F KNGH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF ++ N + + L + +IDTG GL Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G+KY NN + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG +P++ L P T M +YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKTAMEPSYPELNDTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404 E E++ F +TL++G +LD + K+ ++ G AF L+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463 +G+ +D F + + EQ+ RARA +L ++ +K+ F+GY Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGYTDF 472 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522 S V AIV+ G+ V+ + VE++ D+TPFYA Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVTAPANVEIILDRTPFYA 509 Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ+ D G I D + ++ DVQ+ + + VH + G L + ID R Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L+ +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +L VV + M +DA GA L G KY D VRVV + S LCGGTH S Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEIGD----GWSRELCGGTHAKS 685 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + +V R+E Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLE 745 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIAD----VNFMSHIISEVDS-KELKSVMD 814 + + + A E + ++ + V + S L+ + Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEVKNSNEKVKLALKNVGNFGSFDALRKTVL 805 Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 ++ ++ ++ L G++++ + + + E A DL R ++KVLGGGG GG Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVRTASKVLGGGG-GG 864 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 +P AQ GG + +K D+A+ S + K Sbjct: 865 KPDFAQGGGTDASKLDEALEAAKSEVAK 892 >gi|283769383|ref|ZP_06342282.1| alanine--tRNA ligase [Bulleidia extructa W1219] gi|283104040|gb|EFC05424.1| alanine--tRNA ligase [Bulleidia extructa W1219] Length = 875 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 318/916 (34%), Positives = 490/916 (53%), Gaps = 63/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + R FL+FF G + P +SL+P +DPTL++ N+G+ K F G++KP+ Sbjct: 3 MKKITGNETRQLFLDFFASKGCMIEPGASLVPHDDPTLLWINAGVAALKPYFDGRKKPIS 62 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K Sbjct: 63 HRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKVEAITWAWEFLTSKK 118 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + RLY+TVY +D+EA W K G+ I + T DNFW + GP GP +E++ Sbjct: 119 YIGFEPERLYVTVYPDDQEAIDTWIK-VGMIPSHIRK--TEDNFWEIGR-GPGGPDTELY 174 Query: 177 FDQGECIPG-----GLPGSSEEGERYIEIWNLVFMQFEQQNKQ----ERFILPKMSIDTG 227 +D+GE L E +RYIE+WN+VF Q++ + E LP+ +IDTG Sbjct: 175 YDRGEKYDPQGKGEELFFQDLENDRYIEVWNIVFSQYDCHPGEMPRSEYPELPQKNIDTG 234 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLI 286 MGLER+ ++Q+ N+D DLF +I A+E++ + Y+ + +RVI DH+R+ +F I Sbjct: 235 MGLERLVALIQDGQTNFDTDLFLPIIHATEKLASVSYQEEKAKMAYRVIADHIRTVTFAI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG + +NEGRGY+LRR++RRA+ + +G + M L+ + M + YP +++ L Sbjct: 295 ADGAMFSNEGRGYILRRVLRRAVRFGLKIGIEKAFMYQLVEVVARNMEAYYPYVVEKIDL 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 I ++ E+E F +TL G LL + ++ L G+V F+LYDT+G P ++ ++I Sbjct: 355 IARLVKVEEESFHRTLSMGENLLQSAMEQYQSEKKLPGEVVFRLYDTYGFPFELTKEISF 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G +D F +E+Q+ RAR + S + L + F+GY Sbjct: 415 EAGYE-VDEEGFKAQMEDQKKRARQARGEIQSMRGQS--EDLLNFQTESHFVGY------ 465 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + V+S + A+ + GE + + + +VV +T FYAE+GG Sbjct: 466 -----------------VQSEVTSKITALFRNGERISSLLG--EGDVVLAETVFYAESGG 506 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q DTG ++ ++DVQK G F+HH + L+ M + D + R N Sbjct: 507 QCADTGILWLGDHKIYVSDVQKSPNGQFLHHVNSDV-ELKEGMEVKGCFDVKKRELTRAN 565 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS+ HLL AL +LG HV+Q GS PD RFD H + ++ +L+ +E+ VN+ I + Sbjct: 566 HSSLHLLQAALKKVLGDHVAQAGSYNCPDYARFDFNHFEKMSEEQLREVENLVNEKIMAH 625 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PV T I+ E+A SGA AL KY D VR+V++ G S CGGTHVS+T E+ Sbjct: 626 IPVTTEILPIEEAKKSGATALFDEKYGDFVRIVTM-----GDFSKEFCGGTHVSNTSELG 680 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWE 765 L +I SE S+ +GIRRI + T + A H ++ LK AS K+ + N + R++ + E Sbjct: 681 LFHIESEESVGSGIRRITSTTKKVALRHFKEMEDYLKESASLFKLKKWNALQDRIQMVLE 740 Query: 766 EYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E L +L K K++ +I +N + + + D+ LK L+ K+ Sbjct: 741 ENMALQHQIKELKDEKMKMESEAVLAKKEEIHGLNVLILELHDQDNAGLKDYAVLLRNKL 800 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + G ++L ++K+K V E + NA + + A+ L GG GGG+P +AQSGG Sbjct: 801 ERGFVLLANVTKDKVVYVAAASQEAIAAGVNAGHIVKKVAQ-LTGGHGGGKPDLAQSGGK 859 Query: 881 NGNKADQAIAGVASFL 896 ++ A+ V L Sbjct: 860 EVDQVKFALESVRKSL 875 >gi|170092939|ref|XP_001877691.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647550|gb|EDR11794.1| predicted protein [Laccaria bicolor S238N-H82] Length = 955 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 300/967 (31%), Positives = 465/967 (48%), Gaps = 95/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + + +R F FF+ H +PSS IP +DPTL+F N+GM +K+IF G P Sbjct: 11 SSARVREEFFNFFRSKNHTFVPSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSDMSR 70 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLT Sbjct: 71 LKRAFNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTDV 130 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T ++ D EA + W G+ D I+ DNFW M TGPC Sbjct: 131 YKLPKDRLYVTYFEGDPNNGLEPDLEAKQYWLDQ-GVDEDHILPGNAKDNFWEMGATGPC 189 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI FD+ +++ +EIWN VF+QF +++ LP +DTGMG Sbjct: 190 GPCTEIHFDRV-GGRNAAHLVNQDDPDVLEIWNNVFIQFNREDNGSLKPLPSKHVDTGMG 248 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +++Q+K +NYD D+F + ++TG++ +RV+ DH+R Sbjct: 249 FERLVSIVQDKRSNYDTDVFLPIFDKIRELTGVRPYEGRFDADDVDGIDTAYRVVADHIR 308 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYP 338 + +F ++DG +P N GRGYVLRRI+RR YAR LG LLP + MG+ +P Sbjct: 309 TLTFALSDGGIPNNVGRGYVLRRILRRGARYARKKLGVKIGCFFSSLLPVVVETMGAVFP 368 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396 E+ + I+E L E+E F +TLDRG L D + + + LNG ++LYDT G Sbjct: 369 EITRKVDDIKEILDEEEESFSRTLDRGEKLFDQFATRAKEQGLKELNGRDVWRLYDTFGF 428 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL D F +A + ++A S +G+ + T Sbjct: 429 PVDLTRLMAEELGLGVNDQE-FEEAQAWSKEASKASSKQVGTSIVKLDVHDTAALEKDTD 487 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513 + ++VKAI + + + G + Sbjct: 488 -----------------IPKTDDSAKFNLGNIRALVKAIFYEKSFPQSTDIMPEGATFGI 530 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAEAGGQ DTG + DG+ + G +H ++ G L ++ Sbjct: 531 ILDKTSFYAEAGGQEYDTGNIVIDGVADFEVTNVQSYNGYVLHTGHLKYGQLAVGKEVIS 590 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 + D R L NH+ATH+L+ L +LG H+ Q GS + P LRFD +H I+ +EL Sbjct: 591 SYDELRRWPLRNNHTATHILNFCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQISHSELS 650 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS-----------V 681 IE D I +N+ V ++ + E A G A+ G Y D VRVV+ + Sbjct: 651 RIEATSVDWIKRNVKVFSKDLELETASKIPGLRAVFGESYPDPVRVVTLEYDVDEIAKDI 710 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 E S CGGTHV+ TG+I I ES I GIRRI AITG A S Sbjct: 711 ENPKWRRTSVEFCGGTHVARTGDIKDFIITEESGIAKGIRRIVAITGHEAHSAARHALLL 770 Query: 737 -------------GQDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLI 773 +D LK+L+ L + +V+ + E + ++ ++ + + Sbjct: 771 QGRLEQIDSLTGKNKDAALKALSIELGQADISVLKKAELRDRLAVIRKAVDKQVKEREAV 830 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + + + ++ A+ S + ++K L++V+ + K+Q + L + E Sbjct: 831 VNREAIDTIQRHFNDNEKAETYIASLNVDG-NAKILQAVISQGR-KLQKA-VYLFSVDPE 887 Query: 834 KK-ASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + + V + +A A +L GG GG+ AQ G +G++ D+A+ Sbjct: 888 SNTVAHVNYVPPEFKTKGADARTWASKVVGIL-GGKAGGKEDSAQGVGSDGHRLDEALVA 946 Query: 892 VASFLKK 898 ++ + Sbjct: 947 AQLYVDE 953 >gi|298346853|ref|YP_003719540.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063] gi|298236914|gb|ADI68046.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063] Length = 895 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 310/926 (33%), Positives = 481/926 (51%), Gaps = 66/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + Sbjct: 1 MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT Sbjct: 60 TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229 D+G P G P +G+RY+E+WNLVF +F + + P + +IDTG+G Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286 LER+A VLQ K N Y+ID +I A++ ++G +Y + + R++ DH+RSS LI Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + Sbjct: 295 GDGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405 I E +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + V I+Q G+ V A + +EV+ D+TPFY Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510 Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQL D G G L + DVQ +G+ +H + G + TID + R Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ H++TH++H L LG +Q GS P +RFD ++K + + + IE N Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + + N+ V M E+A +GA A+ G KY VR+V + S CGGTHV Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 TG I + ++ ESSI +G+RRIEA+ G A + + + + +V R+ Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + + K +L + +L S + V + + +L+ Sbjct: 747 TSLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATT 806 Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ + + ++ L + K +++ V E ++ A L + A +GGGG GG+ Sbjct: 807 LRARFSNANPAVVALAAV-IGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897 +AQ GG K + + + L+ Sbjct: 865 DDLAQGGGALAGKPETGLNALVDTLR 890 >gi|315656689|ref|ZP_07909576.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492644|gb|EFU82248.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 895 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 310/931 (33%), Positives = 481/931 (51%), Gaps = 70/931 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + Sbjct: 1 MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT Sbjct: 60 TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229 D+G P G P +G+RY+E+WNLVF +F + + P + +IDTG+G Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286 LER+A VLQ K N Y+ID +I A++ ++G +Y + + R++ DH+RSS LI Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + Sbjct: 295 GDGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405 I E +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + V I+Q G+ V A + +EV+ D+TPFY Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510 Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQL D G G L + DVQ +G+ +H + G + TID + R Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ H++TH++H L LG +Q GS P +RFD ++K + + + IE N Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + + N+ V M E+A +GA A+ G KY VR+V + S CGGTHV Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 TG I + ++ ESSI +G+RRIEA+ G A + + + + +V R+ Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + + K +L + +L S + V + + +L+ Sbjct: 747 TSLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATT 806 Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ + + ++ L + K +++ V E ++ A L + A +GGGG GG+ Sbjct: 807 LRARFSNANPAVVALAAV-IGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864 Query: 872 PHMAQSG----GPNGNKADQAIAGVASFLKK 898 +AQ G G + + + + L K Sbjct: 865 DDLAQGGGAPTGKPETGLNALVDTLRTILTK 895 >gi|242085328|ref|XP_002443089.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor] gi|241943782|gb|EES16927.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor] Length = 1006 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 299/963 (31%), Positives = 451/963 (46%), Gaps = 92/963 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 +R ++ FF H PSS ++P +DPTL+F N+GM +K +F G P Sbjct: 60 TARRVREQYISFFVSKEHTRWPSSPVVPVDDPTLLFANAGMNQYKPVFLGTAAPDSPLGR 119 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ Sbjct: 120 LRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTQV 179 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L R+Y T + DE E+ +W K L +K++ + DNFW M +TGPC Sbjct: 180 YKLPTDRVYATYFGGDEKSGLAADVESKNIWLKY--LPKEKVLPFGSKDNFWEMGDTGPC 237 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI FD+ + + IEIWNLVF+QF ++ LP +DTGMG Sbjct: 238 GPCTEIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADGSLRPLPAKHVDTGMG 296 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV-----------TGMKYEGNNIVNHRVIVDH 278 ER+ ++LQ K +NYD D+F + A Q+ G G + +RV+ DH Sbjct: 297 FERLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPYSGKVGSDDIGKVDMAYRVVADH 356 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 +R+ SF IADG P NEGR YVLRRI+RRA+ + L + L+ MG + Sbjct: 357 IRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVNVFVQLMGDVF 416 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395 PEL + I++ +R E+E F TL +G + + +L+G AF L+DT+G Sbjct: 417 PELKDNEKKIKDIIRDEEESFENTLAKGYEKFKKAADAVKDNGGTVLSGQDAFVLWDTYG 476 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL +D FN ++EE R +AR G + Sbjct: 477 YPIDLTEVMAIDYGLT-VDKEGFNASMEEARQKARNARNKSGGKSIAL------------ 523 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D + K+ P S+VKAI E + A + +V Sbjct: 524 -----DANATAHLRKQGLASTDDNPKFLWPKEHESVVKAIYTGSEYITTATGDEDFGLVL 578 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMSLVL 573 + T FYAE GGQ+ DTG G + +VQ A +H +G S++ Sbjct: 579 ESTSFYAEQGGQIFDTGSIEGSFGTFNVNNVQVFAGY-VLHIGSFAKGSKVLSLGDSVIC 637 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +DY R ++ NH+ TH+L+ AL +LG HV Q GS + P+ LRFD +H KP+ +L+ Sbjct: 638 KVDYNRRTLIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLR 697 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682 IE VN I L V + EDA +G A+ G Y D VRVVSV Sbjct: 698 KIESIVNQQIKDELGVYALEIKLEDAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLADP 757 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI---TGQRARSHLMGQ 738 ++ S+ LCGGTH+++T + ++SE I G+RRI A+ +A Sbjct: 758 DSKEWLSISTELCGGTHITNTRDAKAFALLSEEGIAKGVRRITAVTAGCATQAMELASSI 817 Query: 739 DEKLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQL----I 773 D + + ++ G+V ++ +E RK + Sbjct: 818 DSDINEASQLEGALLEKKIASIKSGLDAAAIPAAKKADLRGKVSKLEDELRKAKKKMGEQ 877 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + ++ ++ ++ + F + +D+ ++ + + K I++ Sbjct: 878 NIQKAVKSAMDAAEAALSGNKLFCVTHVDVGLDTTAVREAVIKVMDKKGLPIMLFSTDEA 937 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 KA + V + + F +D S L G GGGG+ +AQ G + ++ +A+A Sbjct: 938 SNKAVIYAGVPPNAPNGFKVLDWLTPSIAPLKGRGGGGKNGIAQGQGSDASQLKEAMALA 997 Query: 893 ASF 895 S Sbjct: 998 NSI 1000 >gi|297284439|ref|XP_002808351.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA synthetase, cytoplasmic-like [Macaca mulatta] Length = 967 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 310/972 (31%), Positives = 469/972 (48%), Gaps = 95/972 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + + +ADG P N GRG++LR R A + + + L L G A+PEL Sbjct: 304 TITVALADGGRPDNTGRGFLLREPPRPARRFFKRGXGIVFGFIQPLILLPLCQGDAFPEL 363 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 364 KRDPDMVKDIVNEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDL 423 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F + +R A+ S G G+G + I + Sbjct: 424 TGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI--------- 469 Query: 461 DLLRGSKFMKEDRKVLC----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 + LR D + + V A+ ++ VEE +GQ+ VV D Sbjct: 470 EELRARGLEVTDDSPKYNYHLDFSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLD 529 Query: 517 QTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +T FYAE GGQ+ D G + + + T + G +V H G L+ + Sbjct: 530 KTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVR 589 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++ Sbjct: 590 LFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQI 648 Query: 633 KSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE--------- 682 K E+ N++I PV T+ G A+ Y D VRVVS+ Sbjct: 649 KKAEEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDD 708 Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + Sbjct: 709 PSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAES 768 Query: 741 KLKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDL 786 KSL+ + +K +V + ++ E +++K +L + L+ ++DL Sbjct: 769 LKKSLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDL 828 Query: 787 SCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ADV + + S +K L + + ML Sbjct: 829 DRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 888 Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + E K + L V ++ +R A + + + L G GGG+ AQ+ G N Sbjct: 889 FTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNIGCL 947 Query: 886 DQAIAGVASFLK 897 +A+ SF + Sbjct: 948 QEALQLATSFAQ 959 >gi|304389442|ref|ZP_07371405.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327252|gb|EFL94487.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 895 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 310/926 (33%), Positives = 479/926 (51%), Gaps = 66/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + Sbjct: 1 MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT Sbjct: 60 TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229 D+G P G P +G+RY+E+WNLVF +F + + P + +IDTG+G Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286 LER+A VLQ K N Y+ID +I A++ ++G +Y + + R++ DH+RSS LI Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + Sbjct: 295 GDGVRPGNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405 I E +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + V I+Q G+ V A + +EV+ D+TPFY Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510 Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQL D G G L + DVQ +G+ +H + G + TID + R Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ H++TH++H L LG +Q GS P +RFD ++K + + + IE N Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + + N+ V M E+A +GA A+ G KY VR+V + S CGGTHV Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 TG I + ++ ESSI +G+RRIEA+ G A + + + + +V R+ Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + + K +L + +L S + V + +L+ Sbjct: 747 TSLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQFAPAGSVDDLRQAATT 806 Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ + + ++ L + K +++ V E ++ A L + A +GGGG GG+ Sbjct: 807 LRARFSNANPAVVALAAV-IGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897 +AQ GG K + + + L+ Sbjct: 865 DDLAQGGGALAGKPETGLNALVDTLR 890 >gi|327538393|gb|EGF25065.1| alanyl-tRNA synthetase [Rhodopirellula baltica WH47] Length = 945 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 301/979 (30%), Positives = 456/979 (46%), Gaps = 127/979 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R +L FF+ G PS L+P DP+++FT +GM FK+ F G+ K + Sbjct: 1 MKTDELREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+R G D+DNVGRT HHTFFEMLGNFSFG YFKE AI AW+ LT K Sbjct: 61 TTCQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174 + RL +TVY +D+EAF +W GL +I R+ ++NFW S G CGPCSE Sbjct: 117 IPGERLTVTVYKDDDEAFGIWHDKIGLPTQRITRMDEDENFWPASAPSEGPDGVCGPCSE 176 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232 I++ E +EIWNLVF QF + LP +IDTGMGLER Sbjct: 177 IYYQL-------------EDGSDVEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLER 223 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290 A+VLQ N+ ID +++A+ +V G+KYE + R I DH R+S F + + + Sbjct: 224 TASVLQGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENV 283 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P + V+RR++RRA+ + EP + L+ A+ +AYPEL Q + E Sbjct: 284 YPGPKDARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEA 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++ F T+D G+ + + + + ++ G A L T+G+P +++Q + + Sbjct: 344 IESEEKAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQ 403 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D F +A+++ A G +LKE T F+GY+ + Sbjct: 404 NFT-FDWSGFREAMDKH---ADESDGGQRVLFQTGPLETLKEALRETPFVGYEQTEATAV 459 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +K + D ++ + + G+ V + VV D +PFY E+GGQ+ Sbjct: 460 VKGIITGDGKGKGDDGQ-----LLSHLDRPGDAV--------LRVVLDHSPFYGESGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G D ++ D Q+ A + VHH + RG + + D +NR L+ HS Sbjct: 507 GDIGVISNDNFEFEVIDTQRHAS-LIVHHGRLIRGKINEGETCTAKFDVENRTALARAHS 565 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LHHAL T +G H Q GS + PD LRFD T+ K I L IE +V ++++ Sbjct: 566 ATHILHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLSMVSKGDE 625 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + ++ DA +GA L G KY D R+VS+ G S LCGGTH+++T ++ Sbjct: 626 IRWDTVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSF 680 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 +V E S+ G RRIEA+TG+RA+ H L +A L + EE R Sbjct: 681 EVVVEESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVR 740 Query: 769 KLQLIHAKRKLQ---------LNVEDLSCHKIADVNFMSHIISEVDS------------- 806 +L+ + K I+D N + + + Sbjct: 741 RLKKELSSGKAADYPAEFVFDAKAAKAETTDISDYNAVRAAVRGLTRRLNVAITDVLSRL 800 Query: 807 KEL----KSVMDALQK-----------------KIQSGIIMLV----------------- 828 L +++ L++ K+ ++++ Sbjct: 801 DSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLIVAETPGANPNIMRGWIDQI 860 Query: 829 ------------GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + K ++ ++ DL+DR A D +AKV+ GG GGGRP MA Sbjct: 861 RKKSDTPTAVLLASAMNDKVMLVGGLSRDLVDRGLKAGDWVGAAAKVV-GGSGGGRPDMA 919 Query: 876 QSGGPNGNKADQAIAGVAS 894 Q+GG + +K +A+ Sbjct: 920 QAGGKDASKLPEALQQARE 938 >gi|150864558|ref|XP_001383420.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS) [Scheffersomyces stipitis CBS 6054] gi|149385814|gb|ABN65391.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS) [Scheffersomyces stipitis CBS 6054] Length = 954 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 306/965 (31%), Positives = 467/965 (48%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 S +R+TFL++F K H+ +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 10 TASKVRSTFLDYFTNKRDHKFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTADPASDLA 69 Query: 59 --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK AI AW+LLT+ Sbjct: 70 SLKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKPEAITWAWELLTE 129 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + LD+ RLY+T ++ D EA W K G++ D I+ DNFW M + GP Sbjct: 130 VYGLDKDRLYVTYFEGDAKQGLEPDLEAKSFWLK-VGVAEDHILPGNAKDNFWEMGDQGP 188 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ +++ +E+WN+VF+Q+ ++ LP IDTGM Sbjct: 189 CGPCSEIHYDRI-GGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKTLPAKHIDTGM 247 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 G ER+ +VLQ+K++NYD D+F + +TG++ G +RVI DH+ Sbjct: 248 GFERLVSVLQDKSSNYDTDVFLPIFDKIRDITGIRPYGGKFGAEDTDGIDTAYRVIADHV 307 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAY 337 R+ +F I DG +P N+G GYVLRRI+RR Y R L+ + + + Sbjct: 308 RTLTFAICDGGVPNNDGAGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKEIF 367 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHG 395 PE++ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+G Sbjct: 368 PEIVHGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYG 427 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P D+ + + GL ID +F +A E + ++A G + SL E Sbjct: 428 FPSDLTRLMAEEAGLK-IDEPAFEKARLESKEASKAIGNKDGVELVKLDVHSLSE----- 481 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVV 514 + + ++AI V+ + V+ Sbjct: 482 ------------LDSNANVSKTDDSAKYGRENIKATIQAIYSSSGFVDSIDDSSVQYGVL 529 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYAE GGQ+ DTG + DG + G +H + G L + ++ T Sbjct: 530 LDKTPFYAEQGGQIYDTGKLVIDGKAEFNVTNVQVYGGYVLHTGNIVEGSLNVKDDVIAT 589 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D R + NH+ TH+L++AL +LG V Q GS + P+ LRFD +H + +T EL + Sbjct: 590 YDELRRWPIRNNHTGTHVLNYALREVLGDSVDQRGSLVAPEKLRFDFSHKQALTPKELAA 649 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682 +E N+ I N V + ++ +A +G A+ G Y D VRVVS+ Sbjct: 650 VESISNEYIKSNKEVFYKDVSLNEAREINGLRAVFGETYPDPVRVVSIGVPVEDLLAEPK 709 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----------- 731 D S CGGTHV+ TG+I L ++ ES I GIRRI A+TG A Sbjct: 710 KADWHKVSIEFCGGTHVAKTGDIKDLVVIEESGIAKGIRRIVAVTGHDAHAVQKIASEFE 769 Query: 732 --RSHLMG------QDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLI 773 H G ++ K K L LK +V+ + + I ++ + Q Sbjct: 770 AELDHAAGLPFGSVKETKAKELGVALKKLSISVLDKQKLTEKFNKIDKSIKDDLKTKQKA 829 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K+ L + E L D ++H+ ++K + + L+K + + L+ + Sbjct: 830 ETKQTLDVVNEWLEKKDAGDY-LVAHVPINANAKAITEAFNLLKKSHKDKSLYLITGLTD 888 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K A + E + NA DLA+ + +GG GG+ ++ Q G +A+ V Sbjct: 889 KVAHGCYIADEAIAKGVNASDLAQAVSAKIGGKA-GGKGNIVQGMGDKPEGIKEAVNEVT 947 Query: 894 SFLKK 898 L + Sbjct: 948 QLLAE 952 >gi|315655398|ref|ZP_07908298.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333] gi|315490338|gb|EFU79963.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333] Length = 895 Score = 683 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 311/931 (33%), Positives = 482/931 (51%), Gaps = 70/931 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + Sbjct: 1 MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT Sbjct: 60 TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPAHVQKLPREEIFWDTGQPGPAGPCAEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229 D+G P G P +G+RY+E+WNLVF +F + + P + +IDTG+G Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286 LER+A VLQ K N Y+ID +I A++ ++G +Y + + R++ DH+RSS LI Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + Sbjct: 295 GDGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405 I E +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + V I+Q G+ V A + +EV+ D+TPFY Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510 Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQL D G G L + DVQ +G+ +H + G + TID + R Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ H++TH++H L LG +Q GS P +RFD ++K + + + IE N Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + + N+ V M E+A +GA A+ G KY VR+V + S CGGTHV Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 TG I + ++ ESSI +G+RRIEA+ G A + + + + +V R+ Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + + K +L + +L S + V + + +L+ Sbjct: 747 TSLMDRLKVAEKELEKTRLAALLSNLDDYAKSAETLCGVQIIHQVAPAGSVDDLRQAATT 806 Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ + + ++ L + E K +++ V E ++ A L + A +GGGG GG+ Sbjct: 807 LRARFSNANPAVVALAAVIGE-KPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864 Query: 872 PHMAQSG----GPNGNKADQAIAGVASFLKK 898 +AQ G G + + + + L K Sbjct: 865 DDLAQGGGAPAGKPETGLNALVDTLRTILAK 895 >gi|87307364|ref|ZP_01089509.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645] gi|87290104|gb|EAQ81993.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645] Length = 937 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 299/962 (31%), Positives = 456/962 (47%), Gaps = 125/962 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R +L F++ GH S L+P DP+++FT +GM FK+ F G+ K + Sbjct: 1 MKTDELREKYLSFYETKGHSRRASDVLVPTWDPSVLFTPAGMNQFKDHFLGRVKLDFTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+R G D+DNVGRT HHTFFEMLGNFSFG YFK AI AW+ LT K Sbjct: 61 TTCQKCLRTG----DIDNVGRTAYHHTFFEMLGNFSFGDYFKPEAISWAWEFLTDKKWLG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174 L +L +TVY +D+EA W + GL +I R+ ++NFW S+ G CGPCSE Sbjct: 117 LPADQLTVTVYKDDDEAADYWHEKIGLPTSRIHRLEEDENFWPASAPSLGPDGVCGPCSE 176 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232 I+F G P +EIWNLVF QF + LP +IDTGMGLER Sbjct: 177 IYF----HPKGSSP---------VEIWNLVFTQFNRVGDPPNNLEPLPSKNIDTGMGLER 223 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290 A LQ NY ID+ + +++A+ ++ G+KY + R I DH+R+ +F I + + Sbjct: 224 TAATLQGVATNYHIDILRPIVEAAGEICGVKYVPEDDNGRRLRRITDHVRACTFAIHENV 283 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P YV+RR++RRA+ +G EP L+ + M + YPEL + + Sbjct: 284 YPGANKEKYVIRRLLRRAVLDGHQMGLREPFAYQLVDKVAEMMKAGYPELQETTQRVANV 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+E F LD GL + V + + KD I++G+ A +LY T+G P ++ + + + Sbjct: 344 IRTEEENFLDRLDDGLARTEKVFNTMRKDNLTIVDGNDAAELYQTYGFPPELFEQVAAEK 403 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL D + A+E+ G T SLK T ++GYD Sbjct: 404 GL-AFDWPGYKAAMEKFGE---ETGGGTSVLFTTGPIESLKNTLRKTDYVGYDQSEADVT 459 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +K + + EA + VV D TPFY E+GGQ+ Sbjct: 460 IKGIVAHDADGASK------------LFDDYDQTGEAHP---LIVVTDCTPFYGESGGQV 504 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD+G +G R +TD QK +F+HH + G + + + + R + HS Sbjct: 505 GDSGEIVGAAFRFVVTDTQKD-SDLFLHHGYLASGKISSNTDAKAIVG-ERRLGIQRAHS 562 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH+AL LG+H Q GS + D LRFD T+ +T +L +IE++VN+ + + Sbjct: 563 ATHILHYALQKNLGAHAQQQGSKVDEDWLRFDFTNLAAVTPEQLAAIEEDVNERVEASEK 622 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + A GA L G KY D VR+VS+ G S LCGGTH++STG++ + Sbjct: 623 VKWETVPLAKARELGAMMLFGEKYPDPVRLVSM-----GTFSRELCGGTHLTSTGDVGMF 677 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++SE AG+RRI A+TG +A+ + L +A L V +V V+E+ + R Sbjct: 678 EVISEEGPSAGVRRIVALTGTKAKEYRQQVAASLGDIAKSLGVHTLDVPVAVKELMQYVR 737 Query: 769 KLQL----------------IHAKRK--LQLNVEDLSCHKIADVNF--------MSHIIS 802 L+ HAK ++ +N ++ ++S Sbjct: 738 DLKKAASGSGQPPEDLRLPTEHAKAAPPSYAAQKETLKETARMINVGMFDAPARIAALLS 797 Query: 803 EVD-----------------------------------------SKELKSVMDALQKKIQ 821 ++D ++ ++D L+KK Sbjct: 798 DIDSLKQEIVARAEIGVLTADDLLAQAELIGDVKLIVAEAPGANPNVMRQLIDQLRKKAA 857 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ++L+ E K ++ +++D++ A + + + ++ GG GGGRP MAQ+GG Sbjct: 858 PCAVLLIAGQGEDKVMMVAGLSQDVVKSGGKAGEWVKTVSTIV-GGSGGGRPDMAQAGGK 916 Query: 881 NG 882 + Sbjct: 917 DP 918 >gi|308235922|ref|ZP_07666659.1| alanyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018] Length = 894 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 320/928 (34%), Positives = 490/928 (52%), Gaps = 67/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F +GH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+ QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT Sbjct: 60 TSNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF F+ N + + L + +IDTG GL Sbjct: 175 VDRGPKY-GNDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G+KY NN + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG +P++ L P M +YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404 E E++ F +TL++G +LD + K+ I+ G AF L+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463 +G+ +D F + + EQ+ RARA +L ++ +K++ F+GY Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGYTDF 472 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522 S V AIV+ G+ V+ + VEV+ D+TPFYA Sbjct: 473 SSR-----------------------SNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYA 509 Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E+GGQ+ D G I D + ++ DVQ+ + + VH + G L + ID R Sbjct: 510 ESGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L+ +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNE 629 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +L VV + M +DA GA L G KY D VRVV + S LCGGTH S Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEIGD----GWSRELCGGTHAKS 685 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + + R+E Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLE 745 Query: 762 EIWEEYRKLQLIHAK-RKLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814 + + + + + QLN + + A V + S L+ Sbjct: 746 SLLNKMKDSDRKLSSVYESQLNDAVPELVEAAKQSGATVKLAVKNVGNFGSFDALRKTTL 805 Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 ++ ++ I+ L G+++E + V + + D A DL R ++KVLGGGG GG Sbjct: 806 DVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVLGGGG-GG 864 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 +P AQ GG + +K D+A+ V S + K Sbjct: 865 KPDFAQGGGTDASKIDEALDAVKSEVAK 892 >gi|283781582|ref|YP_003372337.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068] gi|283440035|gb|ADB18477.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068] Length = 935 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 295/980 (30%), Positives = 456/980 (46%), Gaps = 136/980 (13%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R +L FFQ GH S L+P DP+++FT +GM PFK+ F G+ K + Sbjct: 1 MKTDELREKYLAFFQTKGHTRKASDVLVPRWDPSVLFTPAGMNPFKDHFLGKVKLEFTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+R G D+DNVGRT HHTFFEMLGNFSFG YFK+ AI AW+ LT K Sbjct: 61 TTSQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTDKKWLG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174 + L +TVY +D+EA +W GL +I R+ +DNFW S G CGPCSE Sbjct: 117 IPGDLLTVTVYLDDDEAADIWHNEIGLPTSRIERMGEDDNFWPASSPSKGPDGVCGPCSE 176 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232 I++ + +EIWNLVF QF + LP +IDTGMGLER Sbjct: 177 IYYKLP-------------SGKTVEIWNLVFTQFNRVGNPPNNLRPLPSKNIDTGMGLER 223 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290 +A+V+Q NY ID+ + +++A+ +V KY+ + R I DH+R+ +F I + + Sbjct: 224 IASVMQGVDTNYHIDILRPIVEAAAEVCSQKYDPASDNGRRLRRIADHVRACTFAIHENV 283 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP YV+RR++RRA+ +G +P + L+P + M S YPEL + +++ Sbjct: 284 LPGPNREKYVIRRLLRRAVLDGHQMGLRDPFLYQLVPIVAEMMKSPYPELGETIERVQKG 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ F T+D GL + G+ + ++ G A LY T+G+P ++++++ Sbjct: 344 IKAEESAFFGTIDAGLARISGMFDSMKSEGRVMVAGGEAADLYQTNGVPPELVENMAAEL 403 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D F A+EE R+ + + +LK TQF+GY+ Sbjct: 404 NFT-FDWDGFRTAMEEHGERSGKIADVVFKTGP---IEALKRALKETQFVGYETTE---- 455 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQK--VEVVFDQTPFYAEAG 525 ++ +K +V +V+ G + V VV D++PFY E+G Sbjct: 456 -------------------TTAEIKGVVAAEHLVDTLEEVGHESPVIVVLDKSPFYGESG 496 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GDTG +G G + Q+ D QK A+ + +H+ + G + + +D R + Sbjct: 497 GQVGDTGEIVGPGFKFQVIDTQKDAD-LLLHYGHLIEGKMNAGAKVTAKVDTVRRNGIRR 555 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HSATH+L +AL LG Q GS + D LRFD + P+ + +L IE V+ +A Sbjct: 556 AHSATHILQYALQQTLGKETHQMGSKVEEDQLRFDFGNPSPVDAEQLLVIEKEVHARVAA 615 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PV + + +A +GA L G KY D R+VS+ G S LC GTH+ +T ++ Sbjct: 616 ADPVAWKFVPLTEARTAGAMMLFGEKYPDPARMVSM-----GSFSKELCAGTHLDNTRDV 670 Query: 706 MLLYIVSESSIRAGIRRI----------------------------EAITGQRARSHLMG 737 + I++E + AG RRI E + +A L Sbjct: 671 LAFEIIAEEGVAAGTRRIVALTGEKAKSFSEKTSTALNELANLLGVELLAVPQAVRTLAQ 730 Query: 738 Q------------------------------------DEKLKSLASFLKVSQGNVVGRVE 761 Q LK A L V + R Sbjct: 731 QVRDLKKQLASGGKGSTTETSPPRGTVSMAPPSAAQIKAALKETARTLNVGPFDAPARAA 790 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQ 817 + EE L A+R + S + I DV + ++ L+ ++D ++ Sbjct: 791 AMLEEVTTLTKQIAERATTSTLSADSLIESATLIGDVKVIVSDAPGSNANILRQLIDQIR 850 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 KK I+ + K V+ V+++L+D+ +A + + + V+GGGG GGRP +AQ Sbjct: 851 KKTSPVAILFAAAEADDKVVVVAGVSKELVDKGVSAGNWVKEVSPVVGGGG-GGRPDLAQ 909 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG A+ + Sbjct: 910 AGGKIPAMIPDALKKALEVI 929 >gi|311114977|ref|YP_003986198.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019] gi|310946471|gb|ADP39175.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019] Length = 894 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 320/928 (34%), Positives = 489/928 (52%), Gaps = 67/928 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F +GH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+ QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT Sbjct: 60 TSNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF F+ N + + L + +IDTG GL Sbjct: 175 VDRGPKY-GKDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G+KY NN + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG +P++ L P M +YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404 E E++ F +TL++G +LD + K+ I+ G AF L+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463 +G+ +D F + + EQ+ RARA +L ++ +K++ F+GY Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGYTDF 472 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522 S V AIV+ G+ V+ + VEV+ D+TPFYA Sbjct: 473 SSR-----------------------SNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYA 509 Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ+ D G I D + ++ DVQ+ + + VH + G L + ID R Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L+ +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNE 629 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +L VV + M +DA GA L G KY D VRVV + S LCGGTH S Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEIGD----GWSRELCGGTHAKS 685 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + + R+E Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLE 745 Query: 762 EIWEEYRKLQLIHAK-RKLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814 + + + + + QLN + + A V + S L+ Sbjct: 746 SLLNKMKDSDRKLSSVYESQLNDAVPELVEAAKQSGATVKLAVKNVGNFGSFDALRKTTL 805 Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870 ++ ++ I+ L G+++E + V + + D A DL R ++KVLGGGG GG Sbjct: 806 DVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVLGGGG-GG 864 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 +P AQ GG + +K D+A+ V S + K Sbjct: 865 KPDFAQGGGTDASKIDEALDAVKSEVAK 892 >gi|269956481|ref|YP_003326270.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894] gi|269305162|gb|ACZ30712.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894] Length = 895 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 312/908 (34%), Positives = 474/908 (52%), Gaps = 64/908 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F+ H ++PS+SL+ DP+++FT +GMVPF G E + Sbjct: 1 MRTADIRQRWLDYFESKDHAIVPSTSLVSP-DPSILFTIAGMVPFIPYILGTEPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R G D++NVGRT RH TFF+M GNFSFG YFK AI +AW+LLT + Sbjct: 60 ASVQKCIRTG----DIENVGRTTRHGTFFQMNGNFSFGDYFKTGAIDMAWELLTTDQGQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL++T++DED E++ + GL I+R+ +NFW + GP GPC+E Sbjct: 116 GYGFDGDRLWVTLWDEDTESYDALTQGIGLDPKHIVRLPRQENFWDTGQPGPAGPCAEWH 175 Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228 +D+G G + + G+RY+EIWNLVF QF + + P + +IDTG Sbjct: 176 YDRGPAYGPDAVGGNVDPGGDRYLEIWNLVFDQFVR-GEGTGKDYPLLGELERKAIDTGA 234 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+A +LQ K N ++ID +I+ EQ+TG KY E + V RVI DH+RS +I Sbjct: 235 GLERIAFLLQGKENMFEIDETYPVIERVEQLTGKKYGAEAEDDVRMRVIADHVRSGLMVI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+NEGRGYVLRRI+RRA+ RLLGY + LLP M ++YPEL Sbjct: 295 GDGVRPSNEGRGYVLRRILRRAVRSMRLLGYDAEALPELLPVSKDAMKASYPELETGFAK 354 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I E E+E F +TL G +LD ++ K + L G AF L+DT+G P+D+ ++ Sbjct: 355 IAEVAYGEEEAFRRTLSAGTTILDVAVAKAKKSGVQTLGGAEAFALHDTYGFPIDLTLEM 414 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDL 462 +G +D +F + EQ+ RARA +L +G + + + +F+GY Sbjct: 415 AAEQG-VAVDEQAFRSLMAEQKQRARADALAKKTGHADLRAYESIVSALSAPVEFLGYTD 473 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L + V ++ G A + VEVV D+TPFYA Sbjct: 474 LDSAV-----------------------TVVGLLVDGVPAPVATAPADVEVVLDRTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 EAGGQL D G + DG +++ DVQ+ +G+ VH + G + TID + R Sbjct: 511 EAGGQLADQGTIVLDGGATVEVDDVQRPIKGLNVHRGRLVEGTITLGDPGTATIDVERRV 570 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 +S HSATH++H AL ++G +Q GS P +RFD + ++ L IE+ VN Sbjct: 571 AISRAHSATHMIHKALHELVGDDRTQAGSENAPSRVRFDFRSPSAVPASALGEIEERVNL 630 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + +NL V +M A GA AL G KY D VRVVS+ GG S LCGGTHV Sbjct: 631 RLQENLEVTDELMPIATARDLGAMALFGEKYGDIVRVVSI----GGDWSRELCGGTHVRL 686 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 +GEI + ++ E+SI +G+RR++A+ G+ A + + L L + RV Sbjct: 687 SGEIGRVALLGEASIGSGVRRVDALVGEGAYGFQAKEHALVGQLTGLLGARPEELTDRVG 746 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDA 815 + + ++ + A + + + V +++ +V + +L++++ Sbjct: 747 SLLSKLKETEKELAALRKGQLLAAAGRLASEASDVDGVRVVTYDAGDVASADDLRALVLD 806 Query: 816 LQKKIQSGIIMLVGI--SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 ++ ++ +LV + + V++ + A D + +A VLGGGG GG+P Sbjct: 807 VRGRLGDAAPVLVAVGGTAGGSPLVVVATNAGAREAGLRAGDFVKAAAGVLGGGG-GGKP 865 Query: 873 HMAQSGGP 880 +AQ GG Sbjct: 866 DLAQGGGR 873 >gi|312069509|ref|XP_003137715.1| alanyl-tRNA synthetase [Loa loa] gi|307767125|gb|EFO26359.1| alanyl-tRNA synthetase [Loa loa] Length = 967 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 296/976 (30%), Positives = 449/976 (46%), Gaps = 92/976 (9%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M IR TF+ FF+ H + SSS+IP +DPTL+F N+GM +K IF G +P Sbjct: 1 MKALTCDEIRATFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSS 60 Query: 59 -----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AW+L Sbjct: 61 EMAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWEL 120 Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LTK + RLY++ + D+ E ++W G+ I+ DNFW M + Sbjct: 121 LTKVLGIPGERLYVSYFGGDDKTGLDADEECRQIWLN-IGVPPSHILSFGMKDNFWEMGD 179 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 GPCGPCSEI +D+ + + +EIWNLVF+QF ++ LP ID Sbjct: 180 VGPCGPCSEIHYDRIGDRD-ASHLVNADDPMVVEIWNLVFIQFNREEDGSLKQLPHKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276 G+G ER+ VLQ K +NYD D+F L A T ++ + +RV+ Sbjct: 239 CGLGFERLVAVLQNKLSNYDTDVFTPLFSAIHNGTKVRPYSGKVGADDVDGIDMAYRVVA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335 DH+R+ ++DG P N GRGYVLRRI+RR + YA L T + L+P + +G Sbjct: 299 DHIRTLCIALSDGGRPDNTGRGYVLRRILRRGIRYANEKLSATPGFLSSLVPTVVNLLGK 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PEL + + + + E+++F KTL++G L + L + IL G+VA++LYDT+G Sbjct: 359 TFPELHKDPQTVMDIINDEEKQFLKTLNKGRTLFQKAATRLQERNILPGNVAWRLYDTYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ Q + RGL ID +F ++ + A + + + ++ E Sbjct: 419 FPLDLTQLMAEERGL-LIDFEAFENCRQQAAEISAARANKMRD-AIDLDVSAISELKNK- 475 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 G + S K + + I+ A+ + V+ S ++ Sbjct: 476 ---GIPVTDDSPKYKYYPLPPENQQTMYNFEKCEGIILALRKDKIFVDTLNSEDFGAIIL 532 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQL DTG + + G +V G L ++ I Sbjct: 533 DRTNFYAEQGGQLFDTGVLREVDKGSEFIVSNVQIRGGYVVLVGTVEGELSVGDKVIQAI 592 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + R + NH+ TH+L+ AL ++G V Q GS + PD LRFD+T +P+T ++K + Sbjct: 593 DEERRNLIMKNHTGTHVLNFALRKVVG-EVEQKGSLVAPDRLRFDLTSKQPLTYEQIKIV 651 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ +I N V + +A +G A+ Y D VR+VSV Sbjct: 652 EEESQMLIDTNATVFAKNAPLAEARQINGLRAVFEEAYPDPVRIVSVGVPIEELLKDKDG 711 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 + + CGGTH+ + G I L I E +I GIRRI A+TG A + D + Sbjct: 712 DLAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRIEQ 771 Query: 744 SLAS------------FLKVSQGNVVGRVEEIWEEY-----------------RKLQLIH 774 + K R+ +++EE + LQ + Sbjct: 772 RVEEAHNEIATDRIVTLDKTQFKTASKRIHDLFEEINQSQLPYCRKESIRKKAKALQKLL 831 Query: 775 AKR----------KLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823 R K+Q +L D + HI S + K L + +++K S Sbjct: 832 DMRDREAKAAVTDKVQQEARELDASLNGDTLYTVHIFSKGANGKVLDGALKSIKK---SH 888 Query: 824 IIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +M I+ + K V+ V++D+ ++ A + +VL G GGG AQ+ G N Sbjct: 889 AVMGFSINDDIGKVVVVARVSKDVANKGLQASEWISKVCRVL-DGRGGGTVIQAQATGNN 947 Query: 882 GNKADQAIAGVASFLK 897 ++A F + Sbjct: 948 TELVEEAAQIALKFAE 963 >gi|326471957|gb|EGD95966.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818] Length = 963 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 298/962 (30%), Positives = 463/962 (48%), Gaps = 94/962 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +W+ G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L A + +TG + +RV+ DHLR+ +F Sbjct: 261 VSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 320 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 380 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG + L+G ++LYDT G P+D+ Sbjct: 381 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D R +A+ S G ++ + ++ Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 484 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++++ + + +KAI E+++ + +++ ++ D+ Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFRKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG + DG + G +H ++ G S++ D Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H I+ ++L+ IE Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 660 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 661 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 721 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGERL 780 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780 +D ++KSL L + V + + +I ++ Q K +++ Sbjct: 781 NRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 840 Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ +S + + + + K + ++ ++ K+ + + K + Sbjct: 841 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADT-SKVA 899 Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 VT DL +A + A + ++ GG GG+ +A G NK D+A+ +L Sbjct: 900 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 958 Query: 897 KK 898 +K Sbjct: 959 EK 960 >gi|311742342|ref|ZP_07716151.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272] gi|311313970|gb|EFQ83878.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272] Length = 886 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 318/906 (35%), Positives = 481/906 (53%), Gaps = 61/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL F+ GH ++PS+ L+ + P L+F N+GMVPFK F GQE P + Sbjct: 1 MDTAEIRRRFLAHFENAGHTVVPSAPLLLDD-PNLLFVNAGMVPFKPYFLGQETPPWPTA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW L+T Sbjct: 60 TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAITHAWRLITGSINDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +D +++TV D+E+ ++WK+++GL ++I DN+W M GP GPCSEI+ Sbjct: 116 GLGIDADTIWVTVLHSDQESREIWKRVAGLPDERIQDRGLLDNYWHMGVPGPGGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 D+G G G + +R++EIWNLVFMQ E + + LP +IDTGMGL Sbjct: 176 VDRGPEF-GPDGGPVVDEDRFLEIWNLVFMQEEITDVLAKDRFEVVGALPHQNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ+K N Y+ID +I+ + Q++G Y + + V RVI DH+RS L+ D Sbjct: 235 ERVAYLLQDKRNLYEIDEVYPVIETASQISGRTYGRDHADDVRFRVIADHVRSGLMLMGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NE RGYVLRR++RRA+ RLLG+ +P + LLP M ++YPEL IE Sbjct: 295 GVTPGNEARGYVLRRLLRRAVRSMRLLGFEDPALPLLLPVSLERMKASYPELEADFPRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+E F +TL +G + +G + L+GD AF L+DT+G P+D+ ++ Sbjct: 355 QVAYAEEEAFRQTLGKGTQIFEGAAAAVKQQGGSGLSGDAAFTLHDTYGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + EQRSRA+A + G + ++ + + G T ++ Y L Sbjct: 415 EQGLS-VDEDGFRALMAEQRSRAKADAKSKKGGHADTAVYRAALDAGGPTDWLAYSTL-- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S V A++ G V +G EVV D+TPFYAE+G Sbjct: 472 ---------------------TTESRVLALIAGGRTVPAIGAGSVGEVVLDRTPFYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G DG R ++ DVQ+ G+ VH V G L E L +D + R Sbjct: 511 GQNADAGHLQWDGGRAEVLDVQRPVRGLVVHQVRVLDGELTVESPLEAAVDPEWRLGARQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG Q+GS P LR D S ++ +L+ +E+ N + Sbjct: 571 AHSGTHVVHAALREVLGPTALQSGSYNRPGYLRLDYGWSGALSPDQLRGVEEASNRALRA 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +LPV + M+ +A GA AL G Y + VRVV + GG S LCGGTHV + +I Sbjct: 631 DLPVTAQTMSLPEAREWGALALFGETYGEDVRVVEI----GGPWSRELCGGTHVDRSSQI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I S+ S+ +G RR+EA+ G +L + + ++ L LK +V RV+++ E Sbjct: 687 GTVVITSDGSVGSGNRRVEALVGIEGFQYLAKERDVVRQLTDLLKAKPDDVPSRVQDLME 746 Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 R + + K + + V F+ + V +L+++ ++ +I Sbjct: 747 RLRAAEKAAERIKAAELLAGAGDLAHGAVDVGGVAFVGARLDGVGGGDLRTLALDVRGRI 806 Query: 821 Q---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ LVG+ + K +V++ V + DR +A L R + + +GG G GG+ +AQ Sbjct: 807 PADRPAVVALVGVV-DDKPAVVVAVNQAGRDRGLSANTLVRAAGEQIGGRG-GGKDDVAQ 864 Query: 877 SGGPNG 882 GG + Sbjct: 865 GGGTDP 870 >gi|326477176|gb|EGE01186.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97] Length = 963 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 298/962 (30%), Positives = 463/962 (48%), Gaps = 94/962 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +W+ G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L A + +TG + +RV+ DHLR+ +F Sbjct: 261 VSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 320 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 380 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG + L+G ++LYDT G P+D+ Sbjct: 381 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D R +A+ S G ++ + ++ Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 484 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++++ + + +KAI E+++ + +++ ++ D+ Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG + DG + G +H ++ G S++ D Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H I+ ++L+ IE Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 660 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 661 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 721 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGERL 780 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780 +D ++KSL L + V + + +I ++ Q K +++ Sbjct: 781 NRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 840 Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ +S + + + + K + ++ ++ K+ + + K + Sbjct: 841 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADT-SKVA 899 Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 VT DL +A + A + ++ GG GG+ +A G NK D+A+ +L Sbjct: 900 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 958 Query: 897 KK 898 +K Sbjct: 959 EK 960 >gi|21672664|ref|NP_660731.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009285|sp|Q8K9E7|SYA_BUCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21623301|gb|AAM67942.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 883 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 332/909 (36%), Positives = 511/909 (56%), Gaps = 56/909 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FL FF++ H ++PSSSLIP ND TL+FTN+GM FK F GQ+K Y V Sbjct: 3 KTTNEIRQSFLNFFKEKEHVIVPSSSLIPENDSTLLFTNAGMNQFKEYFLGQKKKFYPRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TTVQ C+R GGKHNDL+NVG T RHHTFFEMLGNFSF YFK+ AI AW+LLT K F+ Sbjct: 63 TTVQNCLRTGGKHNDLENVGYTKRHHTFFEMLGNFSFNDYFKKEAITYAWELLTSRKWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 +D+ +L+I+VY++DEE +K+W+ I + I++I + +NFW M ETGPCGPC Sbjct: 123 IDKNKLWISVYEDDEETYKIWRDIIRIPCHHIVKIGSKNNSQYDSENFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +EIF++ + + E +IEIWN+VF++F + +K + L SIDTGMGLER Sbjct: 183 TEIFYNYDDSNKSNDFLKDK-NESFIEIWNIVFIEFNRISKTKIVPLINKSIDTGMGLER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY ID+F+ LIQ T +K N ++ ++I DH+RS +FLIA+ ILP Sbjct: 242 ISAVLQNVHSNYKIDIFQKLIQKISNFTEIKD--LNNISLKIIADHIRSCAFLIAENILP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +G L+P+L MG + L + + +IEETL+ Sbjct: 300 SNEHRGYVLRRIIRRALRHGHKIGIKNNFFYKLVPSLIEIMGDSAKILRKKEKIIEETLK 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ +F +TLD+GL +L+ + ++ ++G AF LYDT G P+D+ DI + + Sbjct: 360 IEEIQFSQTLDKGLKILNAEIKK-STNKTISGKTAFYLYDTFGFPIDLTSDICSEKNIK- 417 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID FN A EEQ+ R+ + + I F GY Sbjct: 418 IDFKGFNIAKEEQKKRSSIKNKFYKDYNKDIIIND------TCIFEGY------------ 459 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N S+VK I + E V GQ + D+T FY E+GGQ+GD G Sbjct: 460 -----------KKNKTKSLVKYIFIKNESVFLIYKGQTATIFLDKTSFYPESGGQIGDIG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + + +K + H+ + G + S+ I++ R + +NHSATHL Sbjct: 509 ELYHKKSRFIVENTKKYGDT-IGHYGKLISGKIIVNDSIYSKINHVYRNAIQLNHSATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG + Q GS ++ LRFD ++S I +++++IE+ +N I N + + Sbjct: 568 LHAALQKVLGKNAIQKGSLVSNTHLRFDFSYSGNINLSQIQNIENIINKKIRSNDLIKIK 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++ E+A A AL KY VRVV + S LCGGTH TG I L I+ Sbjct: 628 NLSLEEAKKKKAIALFDYKYQSSVRVVFI-----KDFSIELCGGTHTKRTGNIGLFKIIE 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +SS+ +GI+RIEA+TGQ+A +L +D +++++ LK + ++++I + KL+ Sbjct: 683 QSSVSSGIKRIEAVTGQQAIDYLHIKDNDMQNISFLLKCQNSKITEKIKKIIIQVEKLEK 742 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + + + N+ + + I +N + + + D K +K ++D L+K+++ II+ Sbjct: 743 KTDQLQKRENIYQIKKLSKKINNIKGINLLINTFTNYDQKSMKMIIDQLKKELKISIIIF 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +K +V+I VT++L++ A+ + + K G G GG+ +A+ GG N K Sbjct: 803 INKNKND-FTVIIRVTKNLINYITALKIINIFIKKANGKG-GGKKEIAEGGGMNIKKLPM 860 Query: 888 AIAGVASFL 896 + + S++ Sbjct: 861 ILNYIKSWI 869 >gi|257413376|ref|ZP_04742849.2| alanine--tRNA ligase [Roseburia intestinalis L1-82] gi|257203713|gb|EEV01998.1| alanine--tRNA ligase [Roseburia intestinalis L1-82] Length = 778 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 314/794 (39%), Positives = 453/794 (57%), Gaps = 46/794 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 13 NELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 72 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L++ R Sbjct: 73 QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIHWSWEFLTQVLGLEEDR 128 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFD 178 LY ++Y ED+EAF++W K G+ A+KI R DNFW GPCGPCSEI++D Sbjct: 129 LYPSIYGEDDEAFEIWNKEVGVPAEKITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 187 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +R++E+WN VF QFE K L + +IDTGMGLER+A V Sbjct: 188 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELAQKNIDTGMGLERLAVV 247 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +DID K + +++G KY+ + + V+ R+I DH+RS++F+I+DGI+P+N Sbjct: 248 MQDVDSVFDIDTMKAIRDKVCEMSGKKYQVDALDDVSIRLITDHIRSATFMISDGIMPSN 307 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + R+LG M L + E YPEL + K I + L E Sbjct: 308 EGRGYVLRRIIRRAARHGRMLGIDGIFMAKLAATVINESKDGYPELEEKKDFIFKVLSQE 367 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+FGKT+D+GL +L + + D ++L+G+ AFKLYDT+G P+D+ Q+IL +G + Sbjct: 368 EEKFGKTIDQGLSILSDMEKQMEADGVKVLSGENAFKLYDTYGFPMDLTQEILEEKGFS- 426 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR+ AR ++ + + T+F+GYD L Sbjct: 427 VDEEGFKKAMEVQRTTARKARKVTNYMGADETVYESVDPSVTTEFVGYDSL--------- 477 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + EIVE G+ V+ +QTPFYA GGQ GD G Sbjct: 478 --------------NCKSKITVLTTETEIVEALSDGEVGTVIVEQTPFYATMGGQQGDKG 523 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 Q+ D K G H + G+++T L++D R ++ NHSATHL Sbjct: 524 IIRTAAGEFQVEDTIKLLGGKVGHVGKMISGMMKTGDEADLSVDAALRAKICKNHSATHL 583 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q GS + RFD +H +T EL+ +E VND IA+ +PV T Sbjct: 584 LQKALREVLGTHVEQAGSYQDGERTRFDFSHFAAMTPEELEKVEKIVNDKIAEAIPVRTD 643 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A +GA AL G KY + VRVVS+ G S CGGTHV +T EI I+S Sbjct: 644 VMTVDEAKKTGAMALFGEKYGETVRVVSM-----GDFSKEFCGGTHVKNTSEIAAFKIIS 698 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEA+TG ++ +++L A K + + ++E + E + L Sbjct: 699 ENGVAAGVRRIEALTGDNVFAYYRNLEKELLEAAKAAKATPATLTEKIEHMQAEIKALTS 758 Query: 773 IHAKRKLQLNVEDL 786 + K + E L Sbjct: 759 ENESLKSKAAKEAL 772 >gi|187250451|ref|YP_001874933.1| alanyl-tRNA synthetase [Elusimicrobium minutum Pei191] gi|205830087|sp|B2KAQ0|SYA_ELUMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|186970611|gb|ACC97596.1| Alanyl-tRNA synthetase [Elusimicrobium minutum Pei191] Length = 868 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 296/910 (32%), Positives = 471/910 (51%), Gaps = 57/910 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +FL FF+ G ++ SSSLIP DPTL+FT++GMV FK F G +K Sbjct: 1 MDSKEIRASFLNFFKSKGCTVVASSSLIPQADPTLLFTSAGMVQFKANFLGLDK-SLHRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKCVR D+D+VG TNRH TFFEMLGNFSFG YFKE+AI AW+ LT+ + Sbjct: 60 VTCQKCVRT----TDIDSVGFTNRHLTFFEMLGNFSFGDYFKEQAINWAWEYLTQTLQIP 115 Query: 122 QRRLYITVY-----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +LY+++Y + D EA+ W K L +KI + DNFW+M TGPCGPCSEI+ Sbjct: 116 AEKLYVSIYKGGIAERDNEAYNFWLK--HLPKEKIFELGEKDNFWTMGPTGPCGPCSEIY 173 Query: 177 FDQGEC-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G+ + R++EIWN+VF QF++++ L + +IDTGMGLER+ Sbjct: 174 YDFGDKGCKNKNCNIECDCGRFVEIWNIVFTQFDRKDDGSIVPLSQKNIDTGMGLERLVM 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-HRVIVDHLRSSSFLIADGILPAN 294 +Q + ++ DLF I ++++ ++ + ++ R++ DH+RSS FLI++GILP+N Sbjct: 234 AMQNVQSPFETDLFTPTINEAKKLLKIEGKIKEEISTLRIVSDHIRSSVFLISEGILPSN 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGY+LRR++RRA+ Y +L G P + L+ + G YPE+ K I +++E Sbjct: 294 EGRGYILRRLIRRALRYGKLAGVKGPFLHLLVSVIDLHFGEIYPEIRNNKNYISSVIKTE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F KTL+ G L+ ++ + ++G+ AF LY+T G P+++ ++I A+GL +D Sbjct: 354 EEAFFKTLENGEERLEDIIKK--SKKTISGENAFYLYETFGFPVELTKEIALAKGL-ALD 410 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 SF +A +E R ++R S + ++ T F+GY+ ++ Sbjct: 411 EESFEKAKKEAREKSR-SYADEFSKEKLVVLQKIENSLKNT-FVGYEQIQTKSK------ 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 IV + + V D+TPFYA GGQ+GD G Sbjct: 463 ------------------VLIVLNDKFEQVKELSGPGYAVLDKTPFYATGGGQMGDRGAF 504 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ +K I + HA+ G+L+ + + ID NR++ + NH+A HL++ Sbjct: 505 SWKDGQALVSTAEKPLSNIIL-HAVEVSGVLKEGSEIEVKIDPVNRKKTAANHTAVHLIN 563 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G V Q GS ++ D RFD T TS +L + + N+ + + PV I Sbjct: 564 EALRQVIGESVHQAGSFVSADVFRFDYTAPHAPTSEQLARVFEMANNAVIRAHPVNCEIR 623 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIV 711 EDA GA L+G +Y D R V V +S LCGGTHV++T EI+ + ++ Sbjct: 624 PLEDAKKLGAVTLVGEQYADPARFVMVGANFNEPSLKYSLELCGGTHVNNTSEIITVILI 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E ++ AG+RRIE + G A +L L ++A L+ S V RV + E+ + + Sbjct: 684 KEGALSAGVRRIEGVAGIAAIDYLKENTHALSAMAKTLETSLKEVPARVNSVLEDLKAAK 743 Query: 772 LIHAKRKLQLNVEDLSCHKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A + +L ++ +S + KEL+++ D+L +K + +I+ Sbjct: 744 KEIASLRQKLLTGGSGGTQVKEDVLNGKKIISMKAEGANPKELRTLADSLSQKHKDAVIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + + S + V + +A LA+ A + G GG+ AQ G + Sbjct: 804 -IAVDNGDRRSFV--VKKAEGSNTDACTLAKGLAGKME-GSAGGKADFAQGGCK-VTDWN 858 Query: 887 QAIAGVASFL 896 + + + L Sbjct: 859 EFLKTIKELL 868 >gi|32475431|ref|NP_868425.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1] gi|41018176|sp|Q7UFH9|SYA_RHOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|32445972|emb|CAD78703.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1] Length = 945 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 300/979 (30%), Positives = 454/979 (46%), Gaps = 127/979 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 +R +L FF+ G PS L+P DP+++FT +GM FK+ F G+ K + Sbjct: 1 MKTDELREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRA 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT QKC+R G D+DNVGRT HHTFFEMLGNFSFG YFKE AI AW+ LT K Sbjct: 61 TTCQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174 + RL +TVY +D+EAF +W GL +I R+ ++NFW S G CGPCSE Sbjct: 117 IPGERLTVTVYKDDDEAFGIWHDKIGLPTQRISRMDEDENFWPASAPSEGPDGVCGPCSE 176 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232 I++ E +EIWNLVF QF + LP +IDTGMGLER Sbjct: 177 IYYQL-------------EDGSDVEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLER 223 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290 A+VLQ N+ ID +++A+ +V G+KYE + R I DH R+S F + + + Sbjct: 224 TASVLQGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENV 283 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P + V+RR++RRA+ + EP + L+ A+ +AYPEL Q + E Sbjct: 284 YPGPKDARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEA 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++ F T+D G+ + + + + ++ G A L T+G+P +++Q + + Sbjct: 344 IESEEKAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQ 403 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D F +A+++ A G +LKE T F+GY+ + Sbjct: 404 NFT-FDWSGFREAMDKH---ADESDGGQRVLFQTGPLETLKEALRETPFVGYEQTEATAV 459 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +K + D ++ + + + V + +V D +PFY E+GGQ+ Sbjct: 460 VKGIITGDGKGKGDDGQ-----LLSHLDRPEDAV--------LRLVLDHSPFYGESGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G D ++ D Q+ A VHH + RG + + +D +NR L+ HS Sbjct: 507 GDIGVISNDNFEFEVIDTQRHASM-IVHHGRLIRGKINEGETCTAKVDVENRTALARAHS 565 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LHHAL T +G H Q GS + PD LRFD T+ K I L IE +V ++ + Sbjct: 566 ATHILHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLGMVGKGDE 625 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + ++ DA +GA L G KY D R+VS+ G S LCGGTH+++T ++ Sbjct: 626 IRWDTVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSF 680 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 +V E S+ G RRIEA+TG+RA+ H L +A L + EE R Sbjct: 681 EVVVEESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVR 740 Query: 769 KLQLIHAKRKLQ---------LNVEDLSCHKIADVNFMSHIISEVDS------------- 806 +L+ + K I+D N + + + Sbjct: 741 RLKKELSSGKAADYPAEFVFDAKAAKAETTDISDYNAVRAAVRGLTRRLNVAITDVLSRL 800 Query: 807 KEL----KSVMDALQK-----------------KIQSGIIMLV----------------- 828 L +++ L++ K+ ++++ Sbjct: 801 DSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLIVAETPGANPNIMRGWIDQI 860 Query: 829 ------------GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 S K ++ ++ DL+DR A D +AKV+ GG GGGRP MA Sbjct: 861 RKKSDTPTAVLLASSMNDKVMLVGGLSRDLVDRGLKAGDWVGAAAKVV-GGSGGGRPDMA 919 Query: 876 QSGGPNGNKADQAIAGVAS 894 Q+GG + +K +A+ Sbjct: 920 QAGGKDASKLPEALQQARE 938 >gi|156839933|ref|XP_001643652.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM 70294] gi|156114272|gb|EDO15794.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM 70294] Length = 956 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 287/948 (30%), Positives = 457/948 (48%), Gaps = 91/948 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TAAVVRNTFLDYFKSKEHKFVRSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPSSEFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTQV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + RLY+T ++ DE EA +LW+ G+ D I+ DNFW M E GPC Sbjct: 130 YSIPADRLYVTYFEGDEKQGLEPDHEARELWRS-VGVPDDHILPGNAKDNFWEMGEQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +E+WNLVFMQ+ ++ + LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAAHLVNQDDPDVLEVWNLVFMQYNREQDRSLKSLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F+ L +A +++ ++ +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFQPLFKAIQEIANVRPYTGKFGAEDVDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L+P L ++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSRLMPTLIEQVKDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396 E+ + + E L E+ F KTLDRG L + + + E L+G ++LYDT+G Sbjct: 368 EVAKDPSFVAEILDEEEASFSKTLDRGEKLFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDNSDLLKLNVHEL-------- 478 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + E++ + V + + + V+E G+K ++ Sbjct: 479 ----------SQLNEEKIAKSDDSSKYGFDNVDGTILKLYDGEQFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D T FYAE GGQ DTG I D + + + G H + G L ++ Sbjct: 529 DNTCFYAEQGGQEYDTGKIIIDDVAEFNVENVQLYNGYVFHTGSLVEGKLSVGDKIIAAY 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L++AL LG+ V Q GS + P+ LRFD +H K ++ EL+++ Sbjct: 589 DELRRHPIKNNHTGTHILNYALKETLGNDVDQKGSLVAPEKLRFDFSHKKALSLDELRNV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N I N+ + S A+ G Y D VRVVSV Sbjct: 649 EEVCNQQIKDNMAVYYKEVPLDLAKTISSVRAVFGETYPDPVRVVSVGKPIDEILANPSN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737 E+ +S CGGTHVS TG+I I+ ES I GIRRI A++G A Sbjct: 709 EEWNKYSIEFCGGTHVSKTGDIKYFIILEESGIAKGIRRIVAVSGTDAFEAQRIANEYES 768 Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 +++KLK L L + + + + +I + + AK + Sbjct: 769 ELESTEKLPFSPLKEKKLKELGVQLGQLSISVIKKNELKEKFTKIEKSVKDEVKSRAKLE 828 Query: 779 LQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834 + ++++ + + HI ++K + + ++ K + I L+ G E Sbjct: 829 TKQVLDEVKEHFTENTESLFLVKHIDIPPNAKAITEAIAHIKTKNKDKTIYLLTGNDPEG 888 Query: 835 KASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + +++ + + LA+ + + GG GG+ ++ Q G Sbjct: 889 RVAHGCFISDVAISKGVDGAALAKKVSASI-GGKAGGKGNVFQGMGDK 935 >gi|317507135|ref|ZP_07964895.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974] gi|316254581|gb|EFV13891.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974] Length = 830 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 313/861 (36%), Positives = 452/861 (52%), Gaps = 59/861 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I FL F KNGHEL PS+SLI +DP L+F N+GMV F F GQ P + Sbjct: 1 MRTAEIIERFLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VG T RH+TFF+M GNFSFG YFKE AIQ AW LLT Sbjct: 60 TSVQKCVRT----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAIQFAWSLLTSSVEDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D RL+ TVY++D+EA +LWKK++GL ++I R DN+WSM GP GPCSEI+ Sbjct: 116 GYGFDPNRLWATVYEDDDEAIELWKKVAGLPDERIQRRGPADNYWSMGIPGPSGPCSEIY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 FD+G G G + +RY+EIWNLVFMQ E + + LPK +IDTGMG+ Sbjct: 176 FDRGPEF-GADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGV 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287 ER+A +LQ N Y+ D+ + +I +EQ+TG +Y + RVI DH R++ LI Sbjct: 235 ERVAFLLQGVDNVYETDVVRPVIDCAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + ARLLG TE + L+ + M YPEL++ I Sbjct: 295 DGVNPGNDGRGYVLRRLLRRIVRSARLLGATEMVTPALVREVVAAMSPMYPELLREAPRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E E+ F T+D G L + V + +++ G AF L+DT+G PL++ ++ Sbjct: 355 ERIAAGEETAFRNTIDSGSKLFEQVAEGVRSSSGKVIPGAEAFALHDTYGFPLELTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D F + + EQR+RA+A + ++ + AT+F GYD L Sbjct: 415 QEVGL-QVDQEGFARLMAEQRNRAKADAKARKQAHADQSVYHELLDGPATEFTGYDELSS 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + IV G++ E +GQ+ +++ D+TP YAE+G Sbjct: 474 R-----------------------GSILGIVVDGQLANEVHAGQEAQIILDRTPLYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQL DTG G +TDVQ+ A+ +F H V G + +D + R + Sbjct: 511 GQLADTGSISAPGAHADVTDVQRIAKRLFTHRVKVTEGAFAVGAEVTAQVDSKWRHGANQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS THL+H AL +LG +Q GS P LRFD ++ + IE V + + Sbjct: 571 GHSGTHLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPETRQDIESVVAEAVET 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + PV T + + + A + GA AL G Y +RVRVV + GG S LCGGTHV+S+G+I Sbjct: 631 DYPVNTFVTDIDRARSMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVASSGKI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + ++ ESS +G RR+EA+ G AR HL + L ++AS + +V + E Sbjct: 687 GPVVLLGESSTGSGTRRVEALVGYDAREHLAKERTLLAAVASAVGSPAAEAPDKVRALVE 746 Query: 766 EYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + L+ A++ + + V F+ EVDS +L+ + +L+ Sbjct: 747 RVKTLEREIARQAQAQARAQAVGLAATAVPVGAVEFVGA---EVDSDDLRGLATSLKDAF 803 Query: 821 QS-GIIMLVGISKEKKASVLI 840 + + K S + Sbjct: 804 GPRAAVAALFHKSGGKVSFAV 824 >gi|291456669|ref|ZP_06596059.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213] gi|291381946|gb|EFE89464.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213] Length = 892 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 316/926 (34%), Positives = 492/926 (53%), Gaps = 64/926 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+ QKCVR D+D VG+T RH TFF+MLGNFS G YFKE AI AW+LLT Sbjct: 60 TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTFTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF +E N + + L + +IDTG GL Sbjct: 175 VDRGPEY-GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G KY + V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG T+P++ LLP M ++YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E E++ F +TL+ G+ +LD + K D +++G AF L+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V VEV+ D+TPFYAEA Sbjct: 471 ---------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTHV G Sbjct: 630 RDNLAVTTKEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHVDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV + Sbjct: 687 KIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNTL 746 Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816 + ++ A + QL + + + A V + + L+ + + Sbjct: 747 LAKLKESDRRLASMYEAQLAAAVPALVEDAKNSAAPVKVAIKNVGHFGAVDALRKTVLDV 806 Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G++++ K V + E A DL R ++K+LGGGG GG+P Sbjct: 807 RGQLGEDAPAVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGASKILGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 AQ GG + +K ++A+ + +K Sbjct: 866 DFAQGGGADASKINEALEALKHEAQK 891 >gi|255072777|ref|XP_002500063.1| predicted protein [Micromonas sp. RCC299] gi|226515325|gb|ACO61321.1| predicted protein [Micromonas sp. RCC299] Length = 923 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 319/935 (34%), Positives = 469/935 (50%), Gaps = 86/935 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FLEF+++ GH LPSSSL+P DPT++ T +GM+ FK +F GQ + T Sbjct: 28 SGSGIRRRFLEFYEQRGHARLPSSSLVPE-DPTVLLTIAGMLQFKPVFMGQAERAVPCAT 86 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L TKE+ LD+ Sbjct: 87 TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQYAWELATKEYGLDE 142 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R+Y++V+ ED+EA+ +W+ + G+ ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 143 TRIYVSVFREDDEAYAIWRDVVGVPEERIKRMDEADNFWAAGPTGPCGPCSELYWDFHPE 202 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFM+ + + L +IDTGMGLERMA +LQ K N Sbjct: 203 -RGAEGADLEDDSRFIEFYNLVFMEMNRDASGKTAPLKNKNIDTGMGLERMAQILQGKPN 261 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL + +I + + G+ Y+ + +VI DH R+ ++L++DG+LP+N GRGY Sbjct: 262 NYETDLIRPIIDKAASMAGISYDDADDATKLKLKVIGDHTRAVAYLVSDGVLPSNVGRGY 321 Query: 300 VLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 ++RR++RR + RLLG + + G PE+ I E E Sbjct: 322 IVRRLLRRVVRCGRLLGVKAPEGAQAFTPTIAEVAVGMSGDCDPEVANRAPKIYEEFERE 381 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + RF KTL RG +L +++ + L+GD AF LYDT+G PLDI D+ G Sbjct: 382 ELRFAKTLGRGEEILADMIAAAKAKDAEAPELSGDDAFTLYDTYGFPLDITTDVATEEG- 440 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D+ F A+E R+ +R + + + + E T+F GY L Sbjct: 441 VAVDVEGFEAAMEIARTLSRDARVTVDVTAGDLLATIADELGEPTRFTGYGSL------- 493 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S V+AIV+ GE V+ A +G+ VEVV D TPFYAE GGQ+GD Sbjct: 494 ---------------VEQSVTVRAIVRAGERVDSAAAGETVEVVLDATPFYAEGGGQVGD 538 Query: 531 TGCAIGDGIRLQITDVQKK--AEGIFVHHAI---VERGILRTEMSLVLTIDYQNRRQLSI 585 G + +K +FVH G + ++ +D ++RR+ Sbjct: 539 EGEIQLANGVVLSVRDCRKAAGGRVFVHVCEVTGDASGSVSVGDAVTAAVDAESRRRAKA 598 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL ++G VSQ GS + + LRFD T A+L+ IE VN I Sbjct: 599 NHTATHLLQSALKRVVGEDVSQAGSLVNTERLRFDFNAPAGPTPAQLEEIEALVNGWIGD 658 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +V + M +A + GA A+ G KY D V D S LCGGTHV++T EI Sbjct: 659 ATNLVAQEMPIAEAKSRGATAMFGEKYGDVV-----RVVDVPGVSMELCGGTHVANTAEI 713 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSE+ I AG+RRIEA++G L ++ ++ LA L+V + GRV + + Sbjct: 714 GGFKIVSEAGIAAGVRRIEAVSGPGVVELLNQREGVVRELAGALRVPPEEIAGRVTSLMD 773 Query: 766 EYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + R Q + +L + + + + VD LKS ++L K Sbjct: 774 DLRAAQKEAEALRGELAAAKSVALAADAIVASNGSRVLVARLDGVDPAALKSAAESLLAK 833 Query: 820 ------IQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLA----------RLSAK 861 ++L S + K ++ + E++ A + Sbjct: 834 LAGEAGGAGAAVVLGSGSADGKVGLVAIFDEEVQSAGGLKAGAVLGAAAKACGGGGGGKP 893 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 Q+GG + + D A+ G + Sbjct: 894 GFA-----------QAGGRDATQLDAALDGARDTI 917 >gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] Length = 960 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 302/972 (31%), Positives = 456/972 (46%), Gaps = 110/972 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 + +R TF+ FF+ H SS ++P NDPTL+F N+GM FK IF G P Sbjct: 13 AAKVRDTFISFFEAKEHVNWVSSPVVPLNDPTLLFANAGMNQFKPIFLGTADPNTPLSKL 72 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI+ AW+LLT+ Sbjct: 73 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIEWAWELLTEAI 132 Query: 117 ---EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 + L R Y T + D+EA +W K L ++ DNFW M + Sbjct: 133 CNKVYKLPTDRFYATYFGGDEQLGLAPDDEARDIWLKF--LPPGHVLPFGCKDNFWEMGD 190 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPC+EI FD+ + + IEIWNLVF+QF +++ LP +D Sbjct: 191 TGPCGPCTEIHFDRIGNRD-ATSLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVD 249 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIV 276 TGMG ER+ ++LQ K +NYD D+F + A T G + + +RV+ Sbjct: 250 TGMGFERLTSILQNKMSNYDTDVFLPIFDAIHLATGAPLYSGKVGTEDVDKVDMAYRVVA 309 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335 DH+R+ SF IADG P NEGR YVLRRI+RRA+ Y L E L+ + MG Sbjct: 310 DHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVGVVVKVMGD 369 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PEL Q ++ I + +E+ FGKTL +G+ + +IL+G AF L+DT+G Sbjct: 370 VFPELKQHEMHIRGIIAAEEASFGKTLIKGIEKFKKAAQEVQ-GKILSGQEAFVLWDTYG 428 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ Q + RGL +D++ FN A++E R R+R G Sbjct: 429 FPLDLTQLMAEERGLT-VDVMGFNIAMDEARERSRNAQNKKAGGAIVM------------ 475 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D + K S++KAI E +E A +G +V ++ Sbjct: 476 -----DADATAALHKMGVAATDDISKFTWFEDHESVIKAIYTGIEFLESAAAGDEVGIIL 530 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLT 574 + T FYAE GGQ+ DTG G Q+ +VQ + + E G ++ Sbjct: 531 ETTSFYAEQGGQIFDTGSLEGSCGSFQVCNVQIYGGFVLHIGSVTGEIGRFSVGDKVICK 590 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +DY R+ ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KPI L+ Sbjct: 591 VDYDRRKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPIHPDHLRR 650 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682 IE VND I L V + DA +G A+ G Y D VRVV++ Sbjct: 651 IESIVNDQIKDELDVYGKEATLADAKRINGLRAVFGEVYPDPVRVVTIGRKVEDLLADPD 710 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---GQD 739 + S+ LCGGTH+S+T E ++SE I GIRRI A+T A + + Sbjct: 711 NAEWLSVSAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDSAFKAMELAFSLE 770 Query: 740 EKLKSLASFLKV---------------------SQGNVVGRVEEIWEEYRKLQLIHA--- 775 +++ + + + ++ ++ + ++ RK Q A Sbjct: 771 QEVDAASDAEGSLLEKKVASLRSRVDAAPIPAPKKADLRTKISLLQDQVRKEQKKIAEEN 830 Query: 776 -KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++ +++ E F ++ +D+ ++ + + ++ +++ Sbjct: 831 IQKAVKVATEMADGAASDGKAFCISLVDVGLDTTAVREAVLKVIEQKGISVMVFSTDETT 890 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGN 883 KA V V E+ ++F ++++ LG P +AQ G + + Sbjct: 891 NKAVVYAGVPEN-GEKFKQLEVSEWLTAALG-------PLKGRCGKGKGGLAQGQGTDAS 942 Query: 884 KADQAIAGVASF 895 +A+ F Sbjct: 943 LVKEAMDVATKF 954 >gi|224282910|ref|ZP_03646232.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] gi|313140069|ref|ZP_07802262.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] gi|313132579|gb|EFR50196.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] Length = 892 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 322/922 (34%), Positives = 492/922 (53%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P ++ + Sbjct: 1 MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQPEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +DEEA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF +E N + + L + +IDTG GL Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+EQ++G KY + V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG TEP++ HLLP M ++YPEL + + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ E++ F +TLD G+ +LD + + D +++GD AF L+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 V I+Q+G+ V + VEV+ D+TPFYAEA Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + +ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VND + Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V T M +DAIA GA L G KY D VRVVS+ S LCGGTHV G Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHVDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV + Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746 Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816 + ++ A + QL + A V + + S L+ + + Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806 Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G+S++ K V + E A DL R ++K+LGGGG GG+P Sbjct: 807 RAQLGEDAPVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKMLGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVAS 894 AQ GG + ++ D+A+ + + Sbjct: 866 DFAQGGGSDASRIDEALKALEA 887 >gi|328772364|gb|EGF82402.1| hypothetical protein BATDEDRAFT_32863 [Batrachochytrium dendrobatidis JAM81] Length = 965 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 317/979 (32%), Positives = 472/979 (48%), Gaps = 107/979 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 +S +R TF+++F+++GH + SSS IP DPTLMF NSGM FK IF G P Sbjct: 7 LSKVRKTFIDYFEQHGHTHVVSSSTIPHGDPTLMFANSGMNQFKPIFLGTVDPNSDLARL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VGR HHTFFEMLGN+SFG YFK AI++AW++LTK + Sbjct: 67 SRAANSQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGNYFKTEAIEMAWEILTKVY 126 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLYIT + + D EA LW+ G+ D II + DNFW M + GPCG Sbjct: 127 GLPKDRLYITYFGGDKSLGLESDIEAKHLWRN-IGVEEDHIIPGSVKDNFWEMGDQGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI FD+ + + +EIWNLVFMQ+ ++ + +LP IDTGMGL Sbjct: 186 PCSEIHFDRI-GGRNAADLVNMDDPDVLEIWNLVFMQYNREVDRSLKLLPNKHIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRS 281 ER+ ++LQ+K +NYD D+F + A +++TG++ + +RVI DH+R+ Sbjct: 245 ERLVSILQDKRSNYDTDVFTGIFSAIQKLTGVREYQGRLGEADQDGIDTAYRVIADHVRT 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339 +F I+DG +P+NEGRGYVLRRI+RR YAR L+ + TEMG A+PE Sbjct: 305 LTFAISDGGVPSNEGRGYVLRRILRRGARYARKKFNVPIGCFFSSLVDTVVTEMGDAFPE 364 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397 + + ++E L E+ F KTLDRG L L+ ++++G A++LYDT+G P Sbjct: 365 ITERVDDLKEILDEEERSFSKTLDRGERLFGEYLAKTKASGGKVISGADAWRLYDTYGFP 424 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + GL +D + F Q + + R+R + ++ E Sbjct: 425 VDLTRLMAEENGLT-VDEVEFEQEQKIAKERSRGRNEKETGIVVSLDIHAIGE------- 476 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ---KVEVV 514 + +SS VKA+ G+ VE S + V+ Sbjct: 477 ----------LEANPNVQPTDDQYKYGFDDISSKVKALFVNGKFVESVSSTNHQGRFGVI 526 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ DTG DG + + G +H ++ G L + S++ T Sbjct: 527 LDKTNFYAEQGGQQFDTGSLTVDGSLEFAIEDVQVFGGYVLHIGYLKYGSLSLDDSIMCT 586 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---------- 624 D R L NH+ATH+L++ L +++G+ V Q GS ++P+ LRFD + Sbjct: 587 YDELRRWPLRNNHTATHVLNYGLRSVIGTIVDQKGSLVSPEKLRFDYSCKVNKCFEYNIY 646 Query: 625 ---KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVS 680 K +AEL +E N IA+N + T + +G A+ G Y D VRVVS Sbjct: 647 SRRKIGLTAELAKVEKITNSFIAKNDIIYTSEVSLALAKSINGLRAVFGEVYPDPVRVVS 706 Query: 681 VE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 + S CGGTHV TG+I I+ +S++ GIRRI +TG Sbjct: 707 IGFPIDEMLKDPSNAKWAETSIEFCGGTHVQRTGDIKRFVIIEDSALAKGIRRIVGVTGD 766 Query: 730 RARSHLMGQDE------------------KLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 A + DE LK + L S V+ + + E + + Sbjct: 767 EALKYQKLADEFEIKLEQLRRIKGALFETTLKEIGKTLDSSVLPVLRK-HSLKETFSAIK 825 Query: 771 ---------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + ++ V+ F+S I ++K L + ++ ++ Sbjct: 826 KDFDDKDKARKALESKEAVDTVKSFFEANPEKTVFVSVINQSGNTKALAQAIAHVR-TLK 884 Query: 822 SGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 ML+ + E K + +V + L+DR A + A A +GG G G AQ G Sbjct: 885 DKAAMLIAVDPETSKVAHQCIVPQILIDRGLKATEWADAVASKVGGKKG-GSESAAQGAG 943 Query: 880 PNGNKADQAIAGVASFLKK 898 +A+ +F+ K Sbjct: 944 DRAASVQEAVDAATAFIAK 962 >gi|213692473|ref|YP_002323059.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523934|gb|ACJ52681.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458618|dbj|BAJ69239.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 892 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 318/926 (34%), Positives = 489/926 (52%), Gaps = 64/926 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+ QKCVR D+D VG+T RH TFF+MLGNFS G YFKE AI AW+LLT Sbjct: 60 TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTFTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF +E N + + L + +IDTG GL Sbjct: 175 VDRGPEY-GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G KY + V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG T+P++ LLP M ++YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E E++ F +TL+ G+ +LD + K D +++G AF L+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V VEV+ D+TPFYAEA Sbjct: 471 ---------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTHV G Sbjct: 630 RDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV + Sbjct: 687 KIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNAL 746 Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816 + ++ A + QL + A V + + L+ + + Sbjct: 747 LAKLKESDRRLASMYESQLAASVPALVADTKDSAAPVKVAVKNVGHFGAVDALRKTVLDV 806 Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G++++ K V + E A DL R +AKVLGGGG GG+P Sbjct: 807 RAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 AQ GG + +K +A+ + +K Sbjct: 866 DFAQGGGVDASKIGEALEALKHEAQK 891 >gi|325179830|emb|CCA14233.1| unnamed protein product [Albugo laibachii Nc14] Length = 1022 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 283/977 (28%), Positives = 464/977 (47%), Gaps = 104/977 (10%) Query: 7 IRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 IR TF+ +F+K+ H PS +IP +DPTL+F N+GM FK IF GQ P + Sbjct: 64 IRETFINYFRKHSFHPHTFYPSCPVIPLDDPTLLFINAGMNQFKPIFLGQVDPNHPMSKL 123 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ I+++++LLTK + Sbjct: 124 QRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKQETIEMSFNLLTKVY 183 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 +D RLY T + DEE +W K L + +++ DNFW M + GPCG Sbjct: 184 QIDAERLYATYFGGDPKQQLLPDEETRAIWLKY--LPSSRVLPFGCKDNFWEMGDIGPCG 241 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PC+EI +D+ + + IEIWN VF+QF ++N + LP +DTGMG Sbjct: 242 PCTEIHYDRLGNRDAAA-LVNADVPDVIEIWNNVFIQFNRENSGKLVPLPNKHVDTGMGF 300 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281 ER+A++LQ KT+NYD D+F L + +T + N + +RV+ DH+R+ Sbjct: 301 ERLASILQGKTSNYDTDVFTPLFHTIQSITKAEPYEGKLGAEDANNKDMAYRVVADHIRT 360 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 +F IADG++P+N+GRGYVLRRI+RRA+ Y + L + + L+ + M + +PEL Sbjct: 361 LTFAIADGVMPSNDGRGYVLRRILRRAVRYGQQFLNAPKGFLNQLVRVVVDMMHNTFPEL 420 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--------HLGKDEILNGDVAFKLYD 392 + +E+ + E+E FG+TL++G+ ++ + ++G AF LYD Sbjct: 421 KVKQNEVEQAILEEEESFGRTLNKGIEKFRKIVESVQGARDGEKQQAPAISGKDAFFLYD 480 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 + G PLD+ Q + G+ +D+ + + ++ Q R++ + Sbjct: 481 SMGFPLDLTQVMAEEEGMT-VDVEGYGEQMKLQSERSKQDRKKGSGDNARPLVL------ 533 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ------QGEIVEEAV 506 + + ++ + + + V AI + A Sbjct: 534 --------EAQETNALLELGIPTTNDDAKYEWNKALQAKVVAIFTTTDSSCEFVSAVTAQ 585 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGI 564 ++ +V D+T FYA+AGGQ+ DTG D D + G +H +E G Sbjct: 586 KHDRIGIVLDRTSFYAQAGGQVYDTGSLEKDQPAGTRFNIDAVESYAGYVLHAGTLESGS 645 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 L+ + +DY R +++ NH+ TH+L+ AL +L +V Q GS + +RFD T + Sbjct: 646 LQVGDDISCQVDYDRRSKIAPNHTMTHVLNFALRKVLVKNVDQRGSLVDDVRMRFDFTTN 705 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683 KP++ ++L+++E+ + I Q L V T+ ++ DA G A+ G Y D VRVVS+ Sbjct: 706 KPLSPSQLQAVENMCENSIKQELQVFTKNTSQTDARRIQGLRAVFGETYPDTVRVVSIGQ 765 Query: 684 E-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 S CGGTH+ +T + + E +I GIRRI A TGQ A Sbjct: 766 MIDPMLKDPENSTWSNFSVEFCGGTHLENTKQARKFVLYEEGAIARGIRRISAYTGQEAL 825 Query: 733 SHLMGQDEKLKSL-----------------------ASFLKVSQGNVVGR-VEEIWEEYR 768 + E K L AS + + + + + +E + + + Sbjct: 826 NAEKRGQELQKQLDCIKAMQDSDFIANVTAFRPILDASLISLPLKDHLRKELEVLVDRVK 885 Query: 769 KLQLIHAKRKLQ----LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823 L+ A + ++ + + F+ + D K + ++ A+ + G Sbjct: 886 TLKKKEAALRAADAITQAIKQVKEAQEKSTKFVVARMQAGTDVKLGREILAAMSNALPEG 945 Query: 824 IIMLVGISKE-KKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 M+ + KK + V++ + +A + K + G GGG A Sbjct: 946 SFMVFSTDDDAKKTAAFCQVSQHHADTKQLDARQWVNEAMKPMNGKGGGKSALNANGQAK 1005 Query: 881 NGNKADQAIAGVASFLK 897 + ++A+A S+++ Sbjct: 1006 IMDHIEEAMAIAESYVR 1022 >gi|310287353|ref|YP_003938611.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17] gi|309251289|gb|ADO53037.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17] Length = 892 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 322/922 (34%), Positives = 491/922 (53%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P ++ + Sbjct: 1 MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +DEEA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF +E N + + L + +IDTG GL Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+EQ++G KY + V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG TEP++ HLLP M ++YPEL + + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ E++ F +TLD G+ +LD + + D +++GD AF L+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 V I+Q+G+ V + VEV+ D+TPFYAEA Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + +ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTEVSASIDLARRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VND + Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V T M +DAIA GA L G KY D VRVVS+ S LCGGTHV G Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV + Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746 Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816 + ++ A + QL + A V + + S L+ + + Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806 Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G+S++ K V + E A DL R ++K+LGGGG GG+P Sbjct: 807 RAQLGEDASVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKMLGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVAS 894 AQ GG + + D+A+ + + Sbjct: 866 DFAQGGGSDASCIDEALKALEA 887 >gi|315092869|gb|EFT64845.1| alanyl-tRNA synthetase [Propionibacterium acnes HL060PA1] Length = 892 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 300/926 (32%), Positives = 469/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S +G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRAFGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VEVV + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGASVSAAEPGAVVEVVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|282853869|ref|ZP_06263206.1| alanine--tRNA ligase [Propionibacterium acnes J139] gi|282583322|gb|EFB88702.1| alanine--tRNA ligase [Propionibacterium acnes J139] gi|314923563|gb|EFS87394.1| alanyl-tRNA synthetase [Propionibacterium acnes HL001PA1] gi|315092198|gb|EFT64174.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA4] gi|315103610|gb|EFT75586.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA2] gi|327327432|gb|EGE69208.1| alanine--tRNA ligase [Propionibacterium acnes HL103PA1] Length = 892 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 300/926 (32%), Positives = 468/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VEVV + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGASVSAAEPGAVVEVVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|217967411|ref|YP_002352917.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724] gi|217336510|gb|ACK42303.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724] Length = 865 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 315/908 (34%), Positives = 494/908 (54%), Gaps = 58/908 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR F+++F H LPS+SL+P +DPTL+FT +GMVPFK F GQ P + + Sbjct: 1 MRSSDIRKKFIDYFVSKDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGIPPKRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TTVQKC R D++ VG T RH TF EMLGNFSFG YFK AI A++ LTKE + Sbjct: 61 TTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGIP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180 +L+I+VY+ED+EA+ +W K G+ ++I+R+ DNFW TGPCGPCSEI++D G Sbjct: 117 ISKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDFG 176 Query: 181 EC-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +R++EIWNLVFM + + + LP+ +IDTGMGLER+ TV++ Sbjct: 177 PKSKDEEDCKPGDPCDRFMEIWNLVFMAYYMDEEGKLSPLPQKNIDTGMGLERITTVVEG 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +N ++ DLF +I+ ++ R+I DH+R +FL+ DG++P NEGRGY Sbjct: 237 VSNVFETDLFVPIIEEIRKIVKDSDSVTE----RLISDHIRGITFLMGDGVVPTNEGRGY 292 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR++ A G +P + L+P + M AYP+LI+ K I++ L E+++F Sbjct: 293 VLRRLIRRSLRRAYKHGIVKPFLYKLVPIVVDIMKDAYPDLIEKKDYIQKVLIKEEDQFL 352 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LL+ + + G+ AFKLYDT+G P+++ ++I G +D+ FN Sbjct: 353 RTLEQGLSLLEDYFRKAP-SKTVGGEFAFKLYDTYGFPIELTKEIAEEEGF-VVDVDGFN 410 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFS---LKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + +EEQR +ARA + + L + ++F+GY++L Sbjct: 411 KYMEEQREKARASMEAKLEESFISLSDDEVYLMKSLPKSEFVGYEVLES----------- 459 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S V G+ ++ +G++V + D+TPFY E GGQ+ DTG Sbjct: 460 ------------ESKVL-FFIGGKHGKKISNGEEVYFLMDKTPFYPEGGGQVSDTGKVYN 506 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + + +V++ E +H V +G + +D + R +H+ATHLLH A Sbjct: 507 SEVEVMVLEVKRLGEDFIIHRGKVLKGEFEEGQIVRAEVDKEKRYHTMRHHTATHLLHAA 566 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG+HV Q+GS ++P+ LRFD TH P+T +LK IE VN+ I N V N Sbjct: 567 LREYLGTHVMQSGSLVSPEFLRFDFTHHSPLTYEDLKIIERKVNENILANHKVEKFWTNL 626 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A GA AL KY VR++ + S LCGGTHV TGEI YIV E I Sbjct: 627 EEAKRMGAIALFTEKYQKNVRIIKI-----NNVSMELCGGTHVDCTGEIGSFYIVKEEGI 681 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +GIRRI A+ G +A ++E L ++ LK S + ++E++ +E ++ + Sbjct: 682 GSGIRRIFAVCGLKAWEFQKRREEILNKISFVLKSSPDEIYVKLEKLIDEMKEKEKKIKD 741 Query: 777 RKLQLNVEDLS--CHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + ++ ++L +KI + +F+ + +++++ +K + D L+ K + +IM+ Sbjct: 742 LEERIIEKELEVLANKIENWGEFSFICTYV-DMENEAIKKLGDHLKSKNDN-LIMVFFKP 799 Query: 832 KEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K I+V++ + L A + + + G GGG+ +AQ P + I Sbjct: 800 SDNKLLGTIMVSKKVNLKGITAKKIVEIIGERFN-GKGGGKDTLAQISLPKTD-----IE 853 Query: 891 GVASFLKK 898 + LK+ Sbjct: 854 DIKRALKE 861 >gi|313791987|gb|EFS40088.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA1] gi|313802063|gb|EFS43297.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA2] gi|313838884|gb|EFS76598.1| alanyl-tRNA synthetase [Propionibacterium acnes HL086PA1] gi|314962643|gb|EFT06743.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA1] gi|315077859|gb|EFT49910.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA2] gi|327453294|gb|EGE99948.1| alanyl-tRNA synthetase [Propionibacterium acnes HL092PA1] Length = 892 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQCPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|302670582|ref|YP_003830542.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316] gi|302395055|gb|ADL33960.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316] Length = 884 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 296/916 (32%), Positives = 465/916 (50%), Gaps = 57/916 (6%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +R + +F++ GH + SL+ +MF +GM P G++ P+ Sbjct: 1 MKQFTAQELREAWKQFYKDRGHVDCGAVSLVSDGSTGVMFNVAGMQPLMPYLLGKKHPMG 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + VQ CVR ND+D+VG H TFFEM+G++S G YFK+ Q +++LLT+ F Sbjct: 61 TRLCNVQGCVRT----NDIDSVG-DKSHGTFFEMMGSWSLGDYFKKERCQWSFELLTQLF 115 Query: 119 DLDQRRLYITVYDED-----EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 D L TV+ D +E ++ SG + I + DN+W + E GPCGP S Sbjct: 116 GFDADHLAATVFAGDENAPRDEEGAKYRIESGFKPENIYYLPAEDNWWGL-EYGPCGPDS 174 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E+F+ + G G +Y EI N VFMQ+E+ + L + ++DTG GLER+ Sbjct: 175 EMFYVKDMPDCGPNCGPGCHCGKYTEIGNDVFMQYEKHHDGHLTPLTQKNVDTGWGLERI 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 L + Y IDL +I E+ +G+KYE + + R++ DH R+S LI D Sbjct: 235 LAFLNGVDDVYKIDLHAPVIAYIEKESGLKYESDEKTTRSMRILADHTRTSVMLIGDEAK 294 Query: 292 --PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 P+N G GY+LRR++RRA+ +AR LG + ++ + E +Y L + + + Sbjct: 295 LLPSNTGAGYILRRLIRRAVRHARTLGLNKDQILGVATIYIDEYSESYENLAKNRKFVLT 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 L E RF TL+ G+ +L + + G AF LYDT G P+++ ++ Sbjct: 355 ELEREITRFESTLENGMKEFRKILDKTSAAGKKEIEGKDAFFLYDTFGFPVELTVELADE 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G +D F ++EEQ+ +AR + + +T F ++ AT+F+GY+ L Sbjct: 415 EGFT-VDEEGFKASMEEQKQKARENQNFSANLSTGTGLFDNLDESVATEFLGYEKLE--- 470 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 V I +V E GQ+ ++ D+T FY GGQ Sbjct: 471 --------------------CDGTVAVIAGADALVTELTEGQQGTIITDKTTFYGTMGGQ 510 Query: 528 LGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 +GD G +G + ++T+ K A G H V G + + L++D +NR + N Sbjct: 511 VGDIGEILGSNGAKFEVTEAVKVAGGRTAHVGKVVSGSFKVSDKVTLSVDAENRAKTCRN 570 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLL AL +LG V Q GS PD RFD ++ + +T+ E+K +ED VN I + Sbjct: 571 HSATHLLQKALQMVLGDGVEQAGSYQDPDKTRFDFSYHQAMTADEIKKVEDIVNSKILEA 630 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 LPVVT+ M+ EDA +GA AL G KY + VRVV++ G S LCGGTHV++T I Sbjct: 631 LPVVTKEMSIEDAKKTGAMALFGEKYGETVRVVNM-----GDFSIELCGGTHVANTSHIG 685 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L I+SES + AG+RRIEA+TG AR++ + L A LK + ++V ++++ EE Sbjct: 686 LFKILSESGVAAGVRRIEALTGDNARAYYKNVEANLGEAAKTLKTTPADLVDHIKKLQEE 745 Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + K + L +I V ++ + VD L+ + D ++ K+ Sbjct: 746 LKNLRSENESLKSKEAQAALGDVMDQVLEIKGVKLLATSVKGVDMNGLRDLGDQMKTKLG 805 Query: 822 SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 G+++L+ + K +++ + T+ + +A +L + A +GGGG GGRP+MAQ+GG Sbjct: 806 EGVVVLIS-EADGKVNLVTMATDGAMAKGAHAGNLVKAIAPKVGGGG-GGRPNMAQAGGK 863 Query: 881 NGNKADQAIAGVASFL 896 N A+A + L Sbjct: 864 NPAGIQDALAEAKTVL 879 >gi|208435135|ref|YP_002266801.1| alanyl-tRNA synthetase [Helicobacter pylori G27] gi|208433064|gb|ACI27935.1| alanyl-tRNA synthetase [Helicobacter pylori G27] Length = 817 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 307/861 (35%), Positives = 465/861 (54%), Gaps = 56/861 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVY-QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95 +FTN+GMV FK+IFTG T+ Q C+RAGGKHNDL+NVG T RHHT FEMLGN Sbjct: 2 LFTNAGMVQFKDIFTGMVPRPSIPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLGN 61 Query: 96 FSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT 155 FSFG YFKE I AW+ +TK + LYI+V+++D+EA KLW+K + D+I ++ Sbjct: 62 FSFGDYFKEETILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKF--VPVDRIKKMG 119 Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGE-CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214 DNFW M ++GPCGPCSEI+ DQGE G EG+R++EIWNLVFMQ+E+ N Sbjct: 120 DKDNFWQMGDSGPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDG 179 Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRV 274 LPK SIDTGMGLER+ +L+ K NN+D LF L+ ++T + Y + RV Sbjct: 180 VLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMGEISELTSLDYASEFQPSFRV 239 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334 + DH R+ +FL+A G+ EGRGYVLRRI+RRA+ + L+G E + ++ +C + Sbjct: 240 VADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVCEQFS 299 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394 + + L ++K ++ + E+ERF +TL+ G+ L + L HL +++I +G +AFKLYDT Sbjct: 300 NTHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKLYDTF 359 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G PLD+ D+L + G +D+ F ++EQ R++A G + + ++ Y Sbjct: 360 GFPLDLTNDMLRSHGAC-VDMQGFELCMQEQVKRSKASWKGKQNNA---DFSAILNAYAP 415 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEV 513 +F+GY+ + V + + +A Q+V V Sbjct: 416 NEFVGYETTE-----------------------CPAKVLGFFDSDFKEITDANPNQEVWV 452 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + ++TPFYAE GG +GD G + D I K G+ +++ + + + + Sbjct: 453 LLEKTPFYAEGGGAIGDRGTLLKDNEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQ 512 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R +++ +HSATHLL AL +LGSHVSQ GS + LRFD +H+K + EL+ Sbjct: 513 VSDE--RLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELE 570 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 +ED VN I ++L M A GA AL KY + VRVVS + S L Sbjct: 571 KVEDLVNAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKE-----ASIEL 625 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGG HV +TG I IV ES + +G+RRIEA+ G+ ++++LK+ + LK + Sbjct: 626 CGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNN- 684 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813 +V+ + ++ E + Q DL KI V+ + ++ + D +K ++ Sbjct: 685 -DVIAGINKLKESVKNSQK-------APVSMDLPIEKIHGVDLVVGVVEQGD---IKEMI 733 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D L+ K + + M+ + ++ ++ V A A A++L GG GGGR Sbjct: 734 DRLKSKHERLLAMVF-KKENERITLACGVKNAP---IKANAWANEVAQIL-GGKGGGRDD 788 Query: 874 MAQSGGPNGNKADQAIAGVAS 894 A +GG + A+ + Sbjct: 789 FASAGGKDIENLQAALNLAKN 809 >gi|295130736|ref|YP_003581399.1| alanine--tRNA ligase [Propionibacterium acnes SK137] gi|291377126|gb|ADE00981.1| alanine--tRNA ligase [Propionibacterium acnes SK137] gi|313771981|gb|EFS37947.1| alanyl-tRNA synthetase [Propionibacterium acnes HL074PA1] gi|313810181|gb|EFS47902.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA1] gi|313830512|gb|EFS68226.1| alanyl-tRNA synthetase [Propionibacterium acnes HL007PA1] gi|313833548|gb|EFS71262.1| alanyl-tRNA synthetase [Propionibacterium acnes HL056PA1] gi|314973512|gb|EFT17608.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA1] gi|314976192|gb|EFT20287.1| alanyl-tRNA synthetase [Propionibacterium acnes HL045PA1] gi|314983786|gb|EFT27878.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA1] gi|315096059|gb|EFT68035.1| alanyl-tRNA synthetase [Propionibacterium acnes HL038PA1] gi|327326339|gb|EGE68129.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA2] gi|327445767|gb|EGE92421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA2] gi|327448250|gb|EGE94904.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA1] gi|328760699|gb|EGF74265.1| alanine--tRNA ligase [Propionibacterium acnes HL099PA1] Length = 892 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L + + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKAGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|164427876|ref|XP_965697.2| alanyl-tRNA synthetase [Neurospora crassa OR74A] gi|38567140|emb|CAE76435.1| probable alanine--tRNA ligase, cytosolic [Neurospora crassa] gi|157071919|gb|EAA36461.2| alanyl-tRNA synthetase [Neurospora crassa OR74A] Length = 961 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 311/965 (32%), Positives = 466/965 (48%), Gaps = 93/965 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQA 60 +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM FK IF G ++ + Sbjct: 11 QVRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKR 70 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + L Sbjct: 71 AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGL 130 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D +RLY+T ++ D EA LW + G+ D II DNFW M + GPCGPC Sbjct: 131 DPQRLYVTYFEGSPDLGLEPDLEAKNLWLE-VGVPEDHIIPGNMKDNFWEMGDQGPCGPC 189 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SEI +D+ + + +E+WN+VF+QF++Q + LP IDTGMG ER Sbjct: 190 SEIHYDKVGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGFER 249 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283 + + LQ+KT+NY D+F L ++V G +RVI DH+R S Sbjct: 250 LVSALQDKTSNYATDIFTPLFTKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRLLS 309 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341 F IADG P N GRGYV+RR++RR + YAR E +LPAL +MG +PEL+ Sbjct: 310 FAIADGAAPNNVGRGYVVRRVLRRGVRYARKYFNAEIGTFFSKILPALVEQMGEQFPELV 369 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+E L E+ F TLDRG + L+ ++ L+G ++LYDT G P D Sbjct: 370 KKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGEKKLSGADVWRLYDTFGFPED 429 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + + RGL + R +AR S + +F Sbjct: 430 LTKLMAEERGLTIDEAEVNEA-----REKAREASKAVKEAVQ--------------EFAK 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516 ++ + ++ L V+ I E ++ + + ++ D Sbjct: 471 LNVHQIAELETALNIPRPNSDAKFLKGDTKGKVQLIFNGKEFLKSSKDLPAKTPLGLLLD 530 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ DTG I DG+ ++ G VH+ +E G L +V D Sbjct: 531 NTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEYGGYIVHNGFLEYGELTEGDEVVCEYD 590 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R+ + NH+ TH+L+H+L +LG ++Q GS + D LRFD +H I+ ++K IE Sbjct: 591 ELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDKLRFDFSHKAAISLEDIKKIE 650 Query: 637 DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684 D N I QNL ++ + G A+ G Y + VRVVS+ Sbjct: 651 DLSNHYIRQNLKAYSKDVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNPKNP 710 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--------------- 729 + S CGGTHV +TG I L IV ES I GIRRI A TG+ Sbjct: 711 EWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQREAQVFNEK 770 Query: 730 ----RARSHLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 A ++ + ++K+ A L +++ + R +I +E Q K + Sbjct: 771 LNHINALAYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQKAES 830 Query: 780 QLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + ++ ++ H D N F+ H+ ++K + V+ + K + + + SK+ Sbjct: 831 KTALDTVASHFQKDENKESKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGSKDD 890 Query: 835 KASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 + + V L A + V+GG GG P Q G K ++A+ Sbjct: 891 QVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGKEPSR-QGAGAEPEKLEEAVKKAE 949 Query: 894 SFLKK 898 +L + Sbjct: 950 EWLSE 954 >gi|50842658|ref|YP_055885.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202] gi|289428540|ref|ZP_06430224.1| alanine--tRNA ligase [Propionibacterium acnes J165] gi|59798519|sp|Q6A8I8|SYA_PROAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50840260|gb|AAT82927.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202] gi|289158234|gb|EFD06453.1| alanine--tRNA ligase [Propionibacterium acnes J165] gi|313807674|gb|EFS46161.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA2] gi|313818711|gb|EFS56425.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA2] gi|313820481|gb|EFS58195.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA1] gi|313822713|gb|EFS60427.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA2] gi|313825353|gb|EFS63067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA1] gi|314925090|gb|EFS88921.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA3] gi|314960373|gb|EFT04475.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA2] gi|314978647|gb|EFT22741.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA2] gi|314987967|gb|EFT32058.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA2] gi|314989777|gb|EFT33868.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA3] gi|315084155|gb|EFT56131.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA2] gi|315085498|gb|EFT57474.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA3] gi|315088445|gb|EFT60421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA1] gi|315105744|gb|EFT77720.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA1] gi|327331786|gb|EGE73523.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA3] gi|328753318|gb|EGF66934.1| alanyl-tRNA synthetase [Propionibacterium acnes HL020PA1] Length = 892 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|289425435|ref|ZP_06427212.1| alanine--tRNA ligase [Propionibacterium acnes SK187] gi|289154413|gb|EFD03101.1| alanine--tRNA ligase [Propionibacterium acnes SK187] Length = 913 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 22 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 80 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 81 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 136 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 137 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 195 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 196 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 254 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 255 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 314 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 315 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 374 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 375 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 434 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 435 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 493 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 494 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 530 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 531 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 589 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 590 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 649 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 650 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 705 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 706 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 765 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 766 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 825 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 826 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 884 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 885 KDDMAQGAGSDPTGIDAALRAVNTEL 910 >gi|327330410|gb|EGE72159.1| alanine--tRNA ligase [Propionibacterium acnes HL097PA1] Length = 892 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VEVV + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEVVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKVMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|311064194|ref|YP_003970919.1| alanyl-tRNA synthetase AlaS [Bifidobacterium bifidum PRL2010] gi|310866513|gb|ADP35882.1| AlaS Alanyl-tRNA synthetase [Bifidobacterium bifidum PRL2010] Length = 892 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 322/922 (34%), Positives = 492/922 (53%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P ++ + Sbjct: 1 MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T Y +DEEA +WK G + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + + R+IEIW+LVF +E N + + L + +IDTG GL Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+EQ++G KY + V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG TEP++ HLLP M ++YPEL + + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ E++ F +TLD G+ +LD + + D +++GD AF L+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 V I+Q+G+ V + VEV+ D+TPFYAEA Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + +ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VND + Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V T M +DAIA GA L G KY D VRVVS+ S LCGGTHV G Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV + Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746 Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816 + ++ A + QL + A V + + S L+ + + Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806 Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G+S++ K V + E A DL R ++K+LGGGG GG+P Sbjct: 807 RAQLGEDAPVVVALAGVSEDDKPMVAVATNEVARKNGIKAGDLVRGASKMLGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVAS 894 AQ GG + ++ D+A+ + + Sbjct: 866 DFAQGGGSDASRIDEALKALEA 887 >gi|255948530|ref|XP_002565032.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592049|emb|CAP98312.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255] Length = 958 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 304/969 (31%), Positives = 467/969 (48%), Gaps = 95/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R TFL++F++NGH +PSS + P +DPTL+FTN+GM FK+IF G Sbjct: 9 TAQRVRDTFLDYFKQNGHTFVPSSPVAPLSDPTLLFTNAGMNQFKSIFLGTVDASSDFGK 68 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 69 MKRATNSQKCLRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 128 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY+T ++ D EA +LWK G+ I+ DNFW M + GPC Sbjct: 129 YGLDPDRLYVTYFEGNEAGGLEPDLEAKELWKS-VGVPESHILPGDMKDNFWEMGDQGPC 187 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ +D+ +E+ +EIWN VF+Q+ ++ LP +DTGMG Sbjct: 188 GPCSEVHYDRI-GGRNAAHLVNEDDPNVLEIWNNVFIQYNREPDSSLRSLPNKHVDTGMG 246 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 ER+ ++LQ K +NYD D+F + QA + G +RV+ DH+R Sbjct: 247 FERLVSILQNKPSNYDTDVFTPIFQAIQNTTGAREYRGQFGADDADGIDTAYRVVADHVR 306 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + F I+DG++P NEGRGYV+RR++RR YAR + L+P + ++G +P Sbjct: 307 TLMFAISDGVIPNNEGRGYVIRRVLRRGARYARKYFQVDIGNFFAKLVPTVVDQLGEMFP 366 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + E L E+ F KTLDRG + + + ++L+G ++LYDT G Sbjct: 367 ELKRKQQDVVEILDEEELSFAKTLDRGERQFEQYAQQAKVKGTDMLHGADVWRLYDTFGF 426 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D+ R +A+ S G + + + Sbjct: 427 PVDLTRIMAEERGLRIDDVEFEEA-----RLKAKEASKGQKKAAENTVKLDVHDLG---- 477 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513 K K + P +++ VKAI + ++ G ++ + Sbjct: 478 ----------KLEKMNDVQKTDDSPKFGRGNITAHVKAIYHGKTFHKSTDDVPEGAQLGI 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D T FYAE GGQ DTG I DG + G +H ++ G S++ Sbjct: 528 ILDCTNFYAEQGGQENDTGKIIIDGQAELEVGDVQSYAGYVLHTGFMKYGSFTVGNSVIC 587 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H I+ AEL+ Sbjct: 588 EYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKTAISDAELE 647 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682 +IE + I QN V ++ + A SG A+ G Y D VRVVSV Sbjct: 648 NIEAKSTEYIRQNCAVYSQELPLATAQQISGVRAVFGETYPDPVRVVSVGVELEEILKNV 707 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------SHL 735 S CGGTHV TG+I L I+ ES I G+RRI A+TG+ A Sbjct: 708 KDPRWQEVSIEFCGGTHVQKTGDIKDLIILEESGIAKGVRRIIAVTGEDAHEVQRVAEEF 767 Query: 736 MGQDEKLKSL---------ASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAK 776 + ++L +L A ++V +V R +I ++ Q K Sbjct: 768 GQRLDRLNALPLGSEKEQEAKQVQVDLNQLVISAVQKAKFRERFAKINKQVLDGQKAQQK 827 Query: 777 RKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830 + + VE ++ + + ++K + ++ ++ K+ + +L Sbjct: 828 LESKKAVEAITSYFETPENQDKSWLVVQLPISANAKAVSESLNHVKSKMQGKSVYLLAAD 887 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S++ + S +++ L D +A D A + + +GG GG P G N +K ++AI Sbjct: 888 SEQGRVSHGCYISQGLSDQGASASDWAAVVSGAVGGKAGGKGPTS-IGNGTNTDKVEEAI 946 Query: 890 AGVASFLKK 898 + A +L K Sbjct: 947 SLAADYLNK 955 >gi|296806327|ref|XP_002843973.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480] gi|238845275|gb|EEQ34937.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480] Length = 963 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 297/962 (30%), Positives = 464/962 (48%), Gaps = 94/962 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTIDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +W+ G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PERLYVTYFEGNEGAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP IDTG+G ER+ Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNKHIDTGLGYERL 260 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSF 284 ++LQ+K++NYD D+F L A + + G + +RV+ DHLR+ +F Sbjct: 261 VSILQDKSSNYDTDVFTPLFTAIQNITGARRYTGKFGAEDTDGIDTAYRVVADHLRTLTF 320 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLKVEIGSFFSKLVPALVEQMGDMFPEIKR 380 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG + + L+G ++LYDT G P+D+ Sbjct: 381 KQNDVMEILDEEEVSFAKTLDRGERQFEYYAQQALEAGAGKLHGADVWRLYDTFGFPVDL 440 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D R +A+ S G ++ + ++ Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 484 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++++ + + +KAI E+++ + +++ ++ D+ Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + G +H ++ G S++ D Sbjct: 541 TNFYAEQGGQEYDTGKIIIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H ++ ++L+ IE Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAVSDSDLEKIEA 660 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 661 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 721 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRVAREFGERL 780 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780 +D ++KSL L + V + + +I ++ Q K +++ Sbjct: 781 NRFEKMAAGPERDAEVKSLQVDLNQLTISAVEKAKYRNQFTQIHKKITDAQKAAQKAEVK 840 Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ +S + + + + K + + ++ K+ + + K + Sbjct: 841 TAIDAISSYFEQNKDSQSLVIKLPISANQKAISESLAHVKSKLSGKALYVFAADT-SKVA 899 Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 VT DL + +A + A + ++ GG GG+ +A G NK D+A+ +L Sbjct: 900 HGCYVTPDLTAKGASANEWASAVSGIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 958 Query: 897 KK 898 +K Sbjct: 959 EK 960 >gi|66816759|ref|XP_642382.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] gi|74856597|sp|Q54Y20|SYAC_DICDI RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|60470104|gb|EAL68084.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] Length = 946 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 291/979 (29%), Positives = 452/979 (46%), Gaps = 118/979 (12%) Query: 2 SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 +V+ IR TF++FF++ H +PSS++IP +DPTL+F N+GM FK IF GQ P Sbjct: 1 MDVNQIRKTFIDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT Sbjct: 61 AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + LD+ RLY+T + + D EA LW + L ++++ +NFW M + G Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSEI +D+ E G + + IEIWNLVF+Q+ ++ + LP+ +DTG Sbjct: 179 PCGPCSEIHYDKVEGRDG-ASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTG 237 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVD 277 MGLER+ +++Q+ NYD D+F + A ++VTG + + +RVI D Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIAD 297 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ +F IADG P+ +GRG VLRRI+RRA+ Y + L L+ + G Sbjct: 298 HIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVIANFGEF 357 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + I+ L E++ F KTL++G+V + ++ + L+ + A+ L +G Sbjct: 358 FPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTCYGF 416 Query: 397 PLDIMQDILCARGLAGIDIISF---NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 P+D+ + + E R R + + L G W + Sbjct: 417 PIDLTTIMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAWLKNNDIKP 476 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + + S++KAI E V+ A G + V Sbjct: 477 T-----------------------DDSFKYKQHEIQSVIKAIWNGKEFVDTAPKGTLIGV 513 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGILRTEM 569 V + + FYAE GGQ+ D G + DV+ + + + E L+ Sbjct: 514 VLENSNFYAEQGGQIYDIGQLSFIDDQKTAFDVKDCKVFGGYVLHIGYLSYECDSLKVGD 573 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + LT+DY R + NH++TH++++AL ILG + Q GS + RFD + + IT Sbjct: 574 RVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFRFDFSFGRAITK 633 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR----------- 677 EL I+ VND I + L V + + A +G A+ G Y D VR Sbjct: 634 DELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQL 693 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 + + + +S CGGTH+S+T + L I SE ++ AG+RRI A+TG A S + Sbjct: 694 IENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAVTGSEAASAIEL 753 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWE--------------------EYRKLQLIHAK- 776 E + LK+S + + + + E + LQ K Sbjct: 754 NKELEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQVKE 813 Query: 777 ------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSGIIMLV 828 ++ Q +E S + + +S + + +Q K IML+ Sbjct: 814 QETILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAIMLI 873 Query: 829 GISKE-KKASVLIVVTED--LLDRFNAVDLARLSAKVLG-------GGGGGGRPHMAQSG 878 +E K + + +V +D + A +VLG +AQ Sbjct: 874 SPDEEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKV--------DVAQGV 925 Query: 879 GPNGNKADQAIAGVASFLK 897 G +K D+AI F Sbjct: 926 GSKLDKIDEAILVSREFAN 944 >gi|6176440|gb|AAF05592.1|AF188717_1 alanyl-tRNA synthetase [Dictyostelium discoideum] Length = 946 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 291/979 (29%), Positives = 452/979 (46%), Gaps = 118/979 (12%) Query: 2 SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 +V+ IR TF++FF++ H +PSS++IP +DPTL+F N+GM FK IF GQ P Sbjct: 1 MDVNQIRKTFIDFFREKYEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT Sbjct: 61 AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + LD+ RLY+T + + D EA LW + L ++++ +NFW M + G Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSEI +D+ E G + + IEIWNLVF+Q+ ++ + LP+ +DTG Sbjct: 179 PCGPCSEIHYDKVEGRDG-ASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTG 237 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVD 277 MGLER+ +++Q+ NYD D+F + A ++VTG + + +RVI D Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIAD 297 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ +F IADG P+ +GRG VLRRI+RRA+ Y + L L+ + G Sbjct: 298 HIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPTGFFSKLVDVVIANFGEF 357 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + I+ L E++ F KTL++G+V + ++ + L+ + A+ L +G Sbjct: 358 FPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTCYGF 416 Query: 397 PLDIMQDILCARGLAGIDIISF---NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 P+D+ + + E R R + + L G W + Sbjct: 417 PIDLTTIMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAWLKNNDIKP 476 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + + S++KAI E V+ A G + V Sbjct: 477 T-----------------------DDSFKYKQHEIQSVIKAIWNGKEFVDTAPKGTLIGV 513 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGILRTEM 569 V + + FYAE GGQ+ D G + DV+ + + + E L+ Sbjct: 514 VLENSNFYAEQGGQIYDIGQLSFIDDQKTAFDVKDCKVFGGYVLHIGYLSYECDSLKVGD 573 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + LT+DY R + NH++TH++++AL ILG + Q GS + RFD + + IT Sbjct: 574 RVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFRFDFSFGRAITK 633 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR----------- 677 EL I+ VND I + L V + + A +G A+ G Y D VR Sbjct: 634 DELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQL 693 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 + + + +S CGGTH+S+T + L I SE ++ AG+RRI A+TG A S + Sbjct: 694 IENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAVTGSEAASAIEL 753 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWE--------------------EYRKLQLIHAK- 776 E + LK+S + + + + E + LQ K Sbjct: 754 NKELEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQVKE 813 Query: 777 ------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSGIIMLV 828 ++ Q +E S + + +S + + +Q K IML+ Sbjct: 814 QETILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAIMLI 873 Query: 829 GISKE-KKASVLIVVTED--LLDRFNAVDLARLSAKVLG-------GGGGGGRPHMAQSG 878 +E K + + +V +D + A +VLG +AQ Sbjct: 874 SPDEEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKV--------DVAQGV 925 Query: 879 GPNGNKADQAIAGVASFLK 897 G +K D+AI F Sbjct: 926 GSKLDKIDEAILVSREFAN 944 >gi|326491819|dbj|BAJ98134.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1004 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 291/962 (30%), Positives = 451/962 (46%), Gaps = 96/962 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61 +R F++FF+ H PSS ++P DPTL+F N+GM +K +F G P Sbjct: 60 VRQVFIDFFRSRAHTPWPSSPVVPFEDPTLLFANAGMNQYKPVFLGAADPDSPLGRLRRA 119 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK++AI AW+LLT+ + L Sbjct: 120 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKDQAIAYAWELLTQVYKLP 179 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + D+ ++ +W K L ++++ DNFW M +TGPCGPC+ Sbjct: 180 TDRIYATYFGGDDKAGLAPDTDSKDIWLKY--LPTERVLPFGCKDNFWEMGDTGPCGPCT 237 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI FD+ + + IEIWNLVF+QF ++ LP +DTGMG ER+ Sbjct: 238 EIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADGTLRSLPAKHVDTGMGFERL 296 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-----------TGMKYEGNNIVNHRVIVDHLRSS 282 ++LQ K +NYD D+F L A ++ G G + +RV+ DH+R+ Sbjct: 297 TSILQNKMSNYDTDVFMPLFDAIHKLAGAGIQPYSGKVGSDDVGKVDMAYRVVADHIRTL 356 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P N+GR YVLRRI+RRA+ + L + L+ MG +PEL Sbjct: 357 SFAIADGSRPGNDGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVFPELK 416 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399 + I++ ++ E+ F TL +G + ++ +L+G AF L+DT+ P+D Sbjct: 417 DNEKNIKDIIKEEEASFESTLAKGYERFKKAADAVKENGGTVLSGQDAFVLWDTYDYPID 476 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + + GL+ +D+ FN A+EE R +AR G S+ AT Sbjct: 477 LTEVMAVDFGLS-VDMEGFNIAMEEARQKARNARYKAGGK-------SIVLDANAT---- 524 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ P SS+VKAI E + A + +V + T Sbjct: 525 -------SHLRNQGLASTNDSPKFKHEVHSSVVKAIYTGSEFIATASGDEDFGLVLESTS 577 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL----RTEMSLVLTI 575 FYAE GGQ+ DTG G + +VQ A +H G + + Sbjct: 578 FYAEQGGQIYDTGSIEGPTGSFTVNNVQVFAGY-VLHIGSFLEGPNSKALSVGDEVKCKV 636 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 DY R ++ NH+ TH+L+ AL +LG H+ Q GS + P+ LRFD +H KP+ +L+ I Sbjct: 637 DYTRRTLIAPNHTCTHMLNFALREVLGDHIDQKGSIVLPEKLRFDFSHGKPVQPEDLRKI 696 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 E VN I L V + + DA +G A+ G Y D VRVVS+ Sbjct: 697 EYIVNQQIKDELEVSAQEIKLVDAKRINGLRAVFGEIYPDPVRVVSIGRKVEDLLANPES 756 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740 ++ S+ LCGGTH+S+T + ++SE I G+RRI A+T + +A D Sbjct: 757 KEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLASSIDS 816 Query: 741 KLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQ----LIHA 775 + + + ++ G V ++ E+ R+ + + Sbjct: 817 DINEASKLDGATLEKKIGSIKNTLDAAAIPAARKADLKGNVSKLEEQLREAKKKMGKENI 876 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK-E 833 ++ ++ ++ F +D+ ++ + + + IM+ + Sbjct: 877 QKAVKTAIDAAEAAVSEGKPFCVTHADVGLDTTAVREAVVKAMDRFKGLPIMVFSTDEAS 936 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 KA + V D + F +D S L G GGGG+ +AQ G + ++ +A+ Sbjct: 937 NKAVIYAGVPPDAPNGFKVLDWLTPSIAPLKGKGGGGKNGLAQGQGSDASRVKEAMELAT 996 Query: 894 SF 895 Sbjct: 997 QI 998 >gi|169829321|ref|YP_001699479.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] gi|168993809|gb|ACA41349.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] Length = 842 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 311/859 (36%), Positives = 462/859 (53%), Gaps = 65/859 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +LEFF++ GH PS+ L+P NDP+L++ NSG+ K F G+ P + Sbjct: 22 MKAVDIRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRI 81 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K Sbjct: 82 TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 137 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D L IT++ ED+EA+ +W + G+ +++IR+ NFW + E GP GP SEIF+D+ Sbjct: 138 FDPELLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 194 Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G E ERY+EIWNLVF QF LPK +IDTGMGLER+ + Sbjct: 195 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 254 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281 V+Q N+D DLF +I+ E+ KY+ + V+ +VI DH+R+ Sbjct: 255 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRT 314 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YPE+ Sbjct: 315 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 374 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399 + I+ +++E+ RF +TLD GL + + V + + G AF+LYDT+G P++ Sbjct: 375 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGADAFRLYDTYGFPIE 434 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++ G+ +D F A+EEQR RARA + S + L A++F+G Sbjct: 435 LTEEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 491 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 +D L ++ + A++ G++ + A GQ+ V+ +TP Sbjct: 492 FDTL-----------------------VANTEIAAMIVNGQVEKVASEGQEALVILAKTP 528 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQ+ D+G D + DVQK G +H IVE G + E ++ + + Sbjct: 529 FYAEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDD 588 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + NH+ATH++ AL +LG HV+Q GS + PD LRFD +H +T EL+ IE V Sbjct: 589 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 648 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ + ++ VV M + A A GA AL G KY D VRVVS+ G +S LCGG HV Sbjct: 649 NEKVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 703 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 + EI IVSE I AG RRIEA+TG+ A + ++ L A+ LK + ++V + Sbjct: 704 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTK 763 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIIS--EVDSKELKSVMD 814 V+ + +Y++LQ + ++ + + S D+ L+ +MD Sbjct: 764 VQALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHSSFYKSRSKDNNLLRQMMD 823 Query: 815 ALQKKIQSGIIMLVGISKE 833 L+ + +I+L + + Sbjct: 824 DLKALMPKAVIVLGAVDGD 842 >gi|313104284|sp|P40825|SYA_YEAST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor Length = 983 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 35 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 94 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 95 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 154 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 155 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 213 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 214 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 272 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 273 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 332 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 333 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 392 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 393 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 452 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 453 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 509 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 510 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 553 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 554 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 613 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 614 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 673 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 674 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 733 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A L Q Sbjct: 734 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 793 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 ++KLK L L +++ + + +I + + AK++ Sbjct: 794 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 853 Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832 + ++++ + ++ I ++K + ++ ++ I +L G Sbjct: 854 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGNDP 913 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E + + ++ L + LA+ + ++GG GG+ ++ Q G A+ Sbjct: 914 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 972 Query: 892 VASFLKK 898 + S K+ Sbjct: 973 LESLFKE 979 >gi|315080484|gb|EFT52460.1| alanyl-tRNA synthetase [Propionibacterium acnes HL078PA1] Length = 892 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGKKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L + + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKAGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|313812791|gb|EFS50505.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA1] Length = 892 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEACEAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|327443563|gb|EGE90217.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA2] Length = 892 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKAPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|313471806|sp|Q5AQL1|SYA_EMENI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|259486703|tpe|CBF84773.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue; AFUA_8G03880) [Aspergillus nidulans FGSC A4] Length = 961 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 296/969 (30%), Positives = 464/969 (47%), Gaps = 95/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R TFL++FQ GH + SS + P +DPTL+FTN+GM FK+IF G P Sbjct: 12 TSKLVRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQ 71 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLT+ Sbjct: 72 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWELLTQV 131 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY+T ++ D EA LW K G+ D I+ DNFW M + GPC Sbjct: 132 YGLDPGRLYVTYFEGNKEGGLQPDLEAKALW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 190 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ ++N LP +DTGMG Sbjct: 191 GPCSEIHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYNRENDGSLRSLPNKHVDTGMG 249 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F + Q + + G +RV+ DH+R Sbjct: 250 FERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDDSDGIDTAYRVVADHVR 309 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + F I+DG++P NEGRGYV+RR++RR YAR E ++P + ++G +P Sbjct: 310 TLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTVVEQLGDMFP 369 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL Q + + E L E+ F KTLDRG + + D L+G ++LYDT G Sbjct: 370 ELKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTAGDHKLHGADVWRLYDTFGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RG + ++ EE R +A+ S G TT + + + Sbjct: 430 PVDLTRIMAEERG-----LEIDDRQFEEARHKAKEASKGQKKTTTGSVKLDVHDLG---- 480 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K K + V++ +KAI + +++ + Sbjct: 481 ----------KLEKMNGVPKTDDSAKFEIGNVTAQIKAIYHGKTFHSSTQNLDDSEQIGI 530 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG + DG ++ G +H ++ G + + +++ Sbjct: 531 ILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYAGYVLHTGYMKYGSFKVDDTVIC 590 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG + Q GS ++ + LRFD +H P+T EL Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVSAEKLRFDFSHKSPVTDVELV 650 Query: 634 SIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 IED I + L + +G A+ G Y D VRVVSV Sbjct: 651 KIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETYPDPVRVVSVGAELDEILKNV 710 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---------- 731 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 711 EDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRLAEEF 770 Query: 732 ---RSHLM------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772 +HL +++ K + L + V + ++I +E + Q Sbjct: 771 EKRLNHLEAMPSGSAKEQNAKQIQVELNQLSISAVQKSRFRERFTQINKKIIDEQKAQQK 830 Query: 773 IHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830 + +K+ ++ + ++ + ++K + + ++ K+ + +L Sbjct: 831 LESKKAVESITSYFAAPENANKSWLIAKLPISANAKAVSECLTYVKTKLADKMVYVLASS 890 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + + V + + D +A + + ++ +GG GG P G N K D A+ Sbjct: 891 LEDGRVAHGCYVPKAISDQGASASEWSSAVSRAVGGKAGGKGPTS-IGNGINPEKVDDAV 949 Query: 890 AGVASFLKK 898 + +L K Sbjct: 950 DLASEYLSK 958 >gi|256272535|gb|EEU07514.1| Ala1p [Saccharomyces cerevisiae JAY291] Length = 958 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A L Q Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 ++KLK L L +++ + + +I + + AK++ Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828 Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832 + ++++ + ++ I ++K + ++ ++ I +L G Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYIKSNDAVKDKSIYLLAGNDP 888 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E + + ++ L + LA+ + ++GG GG+ ++ Q G A+ Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947 Query: 892 VASFLKK 898 + S K+ Sbjct: 948 LESLFKE 954 >gi|256077790|ref|XP_002575183.1| alanyl-tRNA synthetase [Schistosoma mansoni] gi|238660414|emb|CAZ31416.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni] Length = 980 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 303/978 (30%), Positives = 452/978 (46%), Gaps = 102/978 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R F EFF+ GH + SSS IP NDPTL+F N+GM +K IF G P Sbjct: 6 TAKELRKQFFEFFESKGHVYVHSSSTIPHNDPTLLFANAGMNQYKPIFQGTVDPNSELGR 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VGR HHTFFEMLGN+SFG YFK+ A + AW+LLT+ Sbjct: 66 LKRSYNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACEWAWELLTEV 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + RLY+T + DEEA +W GL D ++ +NFW M ETGPC Sbjct: 126 WKIPSERLYVTYFGGDISNGLPADEEARDIWIS-IGLPKDHVLPFGMKENFWEMGETGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+QF ++ LP IDTGMG Sbjct: 185 GPCSEIHYDRVGDRD-AAHLVNQDDPDVLEIWNLVFIQFNREEGGSLKPLPAKHIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ K +NYD DLF L + E T + + +RV+ DH R Sbjct: 244 FERVLSVLQNKRSNYDTDLFVPLFKTIEAGTNTRPYTGKVGVEDTDKIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + + DG N GRGYV+RRI+RRA+ +A L + L+ + +G +PE Sbjct: 304 VLTIALGDGGRAQNTGRGYVIRRILRRAVRFAVEVLNAKPGFLATLVDIVIETLGDTFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----KDEILNGDVAFKLYDTHG 395 + + I+E + E+E+F TL RG D V+ L + L+G+VA+ LY+T+G Sbjct: 364 ITRDPDTIKELINEEEEQFLVTLKRGRRFFDRVIKDLKASGSNNTTLSGEVAWGLYETYG 423 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ Q + L ID+ + +A EE + R+++ GS + +L E Sbjct: 424 FPLDLTQILAEEHHLK-IDLNGYEKAKEEAQIRSQSRKCTGGS-IIDLTVHALAELKSKN 481 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVV 514 E + + V AI+ + + VE S Q ++ Sbjct: 482 --------ISVTDDSEKFVYTSDLNGNYVFPDSEATVLAILYENKFVESVDLSSQMCGII 533 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVL 573 ++T FYAE+GGQL D G + V ++ H G L ++L Sbjct: 534 LNKTIFYAESGGQLYDHGFITSLTDEVTEFSVSDVQCRGGYILHIGNLHGKLIVGNRVLL 593 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ++D R L NH+ TH+L+ AL ++ Q GS + PD LRFD T + +T EL Sbjct: 594 SLDTVRRTALMRNHTGTHVLNFALRELVDES-EQKGSLVAPDRLRFDFTAKRGMTRDELA 652 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684 E+ + +I++ L V + ++ A G A+ G Y D VRVVS+ Sbjct: 653 KAEEICDTMISKRLNVYSSNVSLSYAKTIQGVRAVFGEAYPDPVRVVSIGVPVTSLVADP 712 Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S CGGTHV +T I +L IVSE +I G+RRI A+TG A Sbjct: 713 ETGYGKTTSVEFCGGTHVLNTKHIGVLVIVSEEAISKGVRRIIALTGHEAERAQKEALRL 772 Query: 742 LKSLASFLK--------------------------VSQGNVVGRV-------EEIWEEYR 768 + F+K + V R E + E+ Sbjct: 773 DNEVNEFIKLVNQSISLHQNHNNNITDDFNINRQMSNLSEHVSRAVISQHHRENLREKLF 832 Query: 769 KLQLIHAKRKLQ---------LNVEDLSCHKIAD--VNFMSHIIS-EVDSKELKSVMDAL 816 K + + R L L +A+ N++ H+ + ++K + S + + Sbjct: 833 KAKKLLDARDKASKTAITSKVLEEARLLGESLANSPSNYIIHVFDAQSNTKIMNSAIKEI 892 Query: 817 QKKIQSGIIMLVGIS-KEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++ + +M++ KK +VL V + L A++ +K + G GGG+ + Sbjct: 893 ERICPNKAVMVISSDLTSKKLTVLCQVPKVLFSRGLKAMNGVTHISKTM-DGKGGGKENS 951 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ+ G + D+ I Sbjct: 952 AQAVGSRIDTLDEVIHLA 969 >gi|315108664|gb|EFT80640.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA2] Length = 892 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 297/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDVVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + +AQ G + D A+ V + L Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTKL 889 >gi|314966609|gb|EFT10708.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA2] Length = 892 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 299/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VEVV + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGASVSAAEPGAVVEVVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G K VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKSPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|121719583|ref|XP_001276490.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1] gi|119404702|gb|EAW15064.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1] Length = 961 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 304/969 (31%), Positives = 475/969 (49%), Gaps = 95/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R TFL+FF+KNGH +PSS ++P +DPTL+FTN+GM FK+IF G P Sbjct: 12 TARRVRDTFLDFFRKNGHTFVPSSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAR 71 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK Sbjct: 72 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 131 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + +D +RLY+T ++ D EA LW G+ D I+ DNFW M + GPC Sbjct: 132 YGIDPQRLYVTYFEGHEEGGLEPDLEAKALWTA-VGVPEDHILPGNMKDNFWEMGDQGPC 190 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 191 GPCSEIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNRETDRTLRPLPNKHVDTGMG 249 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L A + +TG + +RV+ DH+R Sbjct: 250 FERLVSVLQDKSSNYDTDVFSPLFGAIKDITGAREYRGMFGSGDADGIDTAYRVVADHVR 309 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG+ P ++GRGYV+RR++RR YAR E L+P L ++G +P Sbjct: 310 TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKLVPILVDQLGEMFP 369 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + E L E+ F KTLDRG + + L ++ L+G ++LYDT G Sbjct: 370 ELRKKQQDVMEILDEEEISFAKTLDRGERQFESYAQQAKLKGNDKLHGADVWRLYDTFGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D R +A+ S G T+ + + + Sbjct: 430 PVDLTRLMAEERGLKIDDTEFEEA-----RLKAKEASKGQKKSATDTVKLDVHDLG---- 480 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K K + +++ VKAI +G+++ + Sbjct: 481 ----------KLEKMNDVPKTDDSFKFEMCNINAEVKAIYHGKVFHSDTAVISAGEQIGI 530 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ D G I DG + G +H ++ G +++ Sbjct: 531 ILDRTNFYAEQGGQENDIGRIIIDGKAELEVSDVQLYAGYVLHTGFMKYGSFSVGDTVLC 590 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T EL+ Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALKRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 650 Query: 634 SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVV-----------SV 681 IED + I QN V + +G A+ G Y D VRVV +V Sbjct: 651 RIEDISTEYIRQNCDVYSQEVPLATARQITGVRAVFGETYPDPVRVVSVGVEVEEILQNV 710 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 + S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 711 KDPRWNEVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHRVQQVATDF 770 Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEE----YRKLQL 772 ++++ K + L V + + R I ++ + LQ Sbjct: 771 AKRLDRLDAMPLGPQKEQEAKQVQVELNQLSISAVQKSRLRERFAAINKKVIDGQKSLQK 830 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830 + +K+ L + ++ +++ + ++K + ++ ++ K+Q + +L Sbjct: 831 LESKKALDAITSYFEAPENSEKSWLVTRLPISANAKAVSESLNFVKSKLQDKTVYVLAAD 890 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S++ + + V++ ++D +A D A + +GG GG P G + NK ++AI Sbjct: 891 SEQGRVAHGCYVSKAMIDQGASANDWAATVSGAVGGKAGGKGPTS-IGNGVHPNKVEEAI 949 Query: 890 AGVASFLKK 898 A + +L K Sbjct: 950 ALASDYLSK 958 >gi|156838512|ref|XP_001642960.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM 70294] gi|156113543|gb|EDO15102.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM 70294] Length = 957 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 297/966 (30%), Positives = 461/966 (47%), Gaps = 93/966 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 N + +R TF ++F+ H + SS ++P +DPTL+F N+GM FK+IF G P + Sbjct: 12 NANKVRDTFYDYFKSKNHTFISSSPVVPYDDPTLLFANAGMNQFKSIFLGTVDPTSKLYD 71 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDL++VG+ + HHT+FEMLGN+SFG YFK AI +WDLLT Sbjct: 72 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTYFEMLGNWSFGDYFKNDAIVYSWDLLTNV 131 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY++ ++ DE EA +W+ G+ D I+ DNFW M E GPC Sbjct: 132 YKIPKDRLYVSYFEGDESQGLEPDFEARDIWRS-VGVPEDHIVPGNLKDNFWEMGEEGPC 190 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GP SEI +D+ +++ +EIWNLVF+Q+ + ++++ LP +DTGMG Sbjct: 191 GPSSEIHYDRI-GGRNASQLVNKDDPNVLEIWNLVFIQYNRDSERKLKALPAKHVDTGMG 249 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ +NYDIDLF + + + +T + +RV+ DH R Sbjct: 250 FERLVSVLQNVNSNYDIDLFTKIFKRIQAITNAREYTGKFGKYDVDGVDTAYRVLADHAR 309 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F + DG +P NEGRGYV+RRI+RR YAR L+P + E S +P Sbjct: 310 TLTFALTDGCIPNNEGRGYVIRRILRRGARYARKYMNYSIGDFFSKLIPQVIEENKSIFP 369 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396 E+ + I+E L E+ F KTLDRG L + S + L+G ++LYDT+G Sbjct: 370 EVSKDFNYIKEILDEEEASFAKTLDRGEKLFEKYASDASKLDSKTLDGLQVWRLYDTYGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID+ F +A ++ ++ S + + Sbjct: 430 PVDLTELMAQELGL-NIDVPGFERAKKDSYEASKRASKKYDIDLFKLDVHDI-------- 480 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515 + D T V + V I E ++ A K V+ Sbjct: 481 ----------SKLNTDAVPKTNDKDKYETTDVMATVLRIHDGSEFLDVAADKDKKYGVIL 530 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ+ D G I DG + ++ G +H + G L T +V + Sbjct: 531 DKTCFYAEQGGQIYDNGKLIIDGKTEFNVENVQEFNGYILHIGTLMDGKLSTNDKVVASF 590 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG V Q GS +TP+ RFD +H KP+T E+K I Sbjct: 591 DELRRFPIRNNHTGTHILNFALRDVLGKDVEQKGSLVTPEKFRFDFSHKKPLTLDEIKEI 650 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 E + +I PV + + +A S A+ G Y D VRVVS+ Sbjct: 651 EMICDTLIVSKKPVFYKNVQLNEAKRISSIRAVFGESYPDPVRVVSIGQPVEKILEDPTE 710 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736 + S CGGTHV++T +I L I+ E+ I GIRRI A+TG A + Sbjct: 711 TNSSEFSIEFCGGTHVANTEDIQKLAIIEETGIAKGIRRITAVTGPEAFNAQRIAEQFNG 770 Query: 737 ------------GQDEKLKSLASFLKVSQGNVVGR----------VEEIWEEYRKLQLIH 774 +D+K+K L L S +V+ + ++ EE RK + Sbjct: 771 ELDDLNSLPFSDAKDKKIKELGFSLNQSTVSVLSKHLLREKFNKIEKKYKEELRKKNKLE 830 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS-KE 833 AK L E + +K + + I +SK + ++ ++ I L+ K Sbjct: 831 AKVILDKVQEYFNTNKSSKFFVYAFDIP-ANSKAITDAINYIKNSNNDKSIYLLSGDIKG 889 Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K + +++D + + +L ++ ++ GG GGR ++ Q + ++ I + Sbjct: 890 NKLAHGCYLSDDAISKGIDGEELVKVVTTLI-GGKAGGRKNIFQGVSTYNDNINEVIDNI 948 Query: 893 ASFLKK 898 + Sbjct: 949 TKIFSE 954 >gi|313764300|gb|EFS35664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA1] gi|313816208|gb|EFS53922.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA1] gi|313827649|gb|EFS65363.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA2] gi|314915290|gb|EFS79121.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA4] gi|314918160|gb|EFS81991.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA1] gi|314920236|gb|EFS84067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA3] gi|314931759|gb|EFS95590.1| alanyl-tRNA synthetase [Propionibacterium acnes HL067PA1] gi|314955561|gb|EFS99962.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA1] gi|314958056|gb|EFT02159.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA1] gi|314967492|gb|EFT11591.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA1] gi|315098688|gb|EFT70664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA2] gi|315101309|gb|EFT73285.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA1] gi|327450628|gb|EGE97282.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA3] gi|327454034|gb|EGF00689.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA2] gi|328753292|gb|EGF66908.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA2] gi|328754046|gb|EGF67662.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA1] Length = 892 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 297/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ ++I + DN+W M G Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L + I+ G V A G VE+V + Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +GI ++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + ++ + + + + + ++ + V +L+++ Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + +AQ G + D A+ V + L Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTEL 889 >gi|6324911|ref|NP_014980.1| Ala1p [Saccharomyces cerevisiae S288c] gi|1163069|emb|CAA89980.1| ALA1 [Saccharomyces cerevisiae] gi|1420729|emb|CAA99658.1| ALA1 [Saccharomyces cerevisiae] gi|285815203|tpg|DAA11096.1| TPA: Ala1p [Saccharomyces cerevisiae S288c] Length = 958 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A L Q Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 ++KLK L L +++ + + +I + + AK++ Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828 Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832 + ++++ + ++ I ++K + ++ ++ I +L G Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGNDP 888 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E + + ++ L + LA+ + ++GG GG+ ++ Q G A+ Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947 Query: 892 VASFLKK 898 + S K+ Sbjct: 948 LESLFKE 954 >gi|151945412|gb|EDN63655.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae YJM789] Length = 958 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDENLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A L Q Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 ++KLK L L +++ + + +I + + AK++ Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828 Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832 + ++++ + ++ I ++K + ++ ++ I +L G Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGNDP 888 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E + + ++ L + LA+ + ++GG GG+ ++ Q G A+ Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947 Query: 892 VASFLKK 898 + S K+ Sbjct: 948 LESLFKE 954 >gi|190407630|gb|EDV10897.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a] gi|207340860|gb|EDZ69081.1| YOR335Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259149812|emb|CAY86616.1| Ala1p [Saccharomyces cerevisiae EC1118] gi|323352223|gb|EGA84760.1| Ala1p [Saccharomyces cerevisiae VL3] Length = 958 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A L Q Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 ++KLK L L +++ + + +I + + AK++ Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828 Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832 + ++++ + ++ I ++K + ++ ++ I +L G Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGNDP 888 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E + + ++ L + LA+ + ++GG GG+ ++ Q G A+ Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947 Query: 892 VASFLKK 898 + S K+ Sbjct: 948 LESLFKE 954 >gi|281208624|gb|EFA82800.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500] Length = 958 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 286/973 (29%), Positives = 456/973 (46%), Gaps = 101/973 (10%) Query: 3 NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 V+ IR TF++FF H +PSS ++P +DPTL+F N+GM FK IF GQ P Sbjct: 7 TVNEIRKTFIDFFVNKCEHTFVPSSQVVPHDDPTLLFANAGMNQFKPIFLGQADPRSEQA 66 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI AW+LLT Sbjct: 67 KLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKREAITWAWELLTD 126 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + LD+ RLY + + + D EA +W++ L AD+++ +NFW M +TGP Sbjct: 127 VYKLDKERLYASYFGGAADKGLEPDLEAKSIWEEF--LPADRVLPFGMKENFWEMGDTGP 184 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI FD+ E G + + IEIWNLVF+Q+ ++ + LP +DTGM Sbjct: 185 CGPCSEIHFDKIEGRTGSQALVNADDPTLIEIWNLVFIQYNREADKSLRPLPNKHVDTGM 244 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT----------GMKYEGNNIVNHRVIVDH 278 GLER+ +++Q+ NYD D+F + ++VT G + +RVI DH Sbjct: 245 GLERVTSIIQKVGTNYDTDIFGPIFTEIQKVTGFTEPYGGKVGKDDPEQVDMAYRVIADH 304 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R+ +F +ADG +P+++GRG VLRRI+RRA+ Y + L L+ + G + Sbjct: 305 IRTLTFSLADGAIPSSDGRGSVLRRILRRAIRYGKQKLKAPPGFFHRLVDVVVAHFGEFF 364 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL I + SE++ F +TLD+G++ + +L + +++ A L + G P Sbjct: 365 PELRSRPQHIISVIESEEKMFERTLDKGILEFENILKKTS-NGVISASHAHYLSSSFGFP 423 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + +G+ +D+ + +E+ +R S Sbjct: 424 IDLTTLMAEEKGVK-VDLKGYEVLVEKFAEDSRRRQKEKKSELN---------------- 466 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVV 514 +G +++ V ++VKAI E++++ + K V V+ Sbjct: 467 LG---AEPISILQKRSIQPTNDQYKYEQKEVQTVVKAIWTGKELIDQLTAEHKNTLVGVI 523 Query: 515 FDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMS 570 + T FY E GGQ+ D G + K G +H + + Sbjct: 524 LESTNFYPEQGGQIYDIGNINFVDSQNTAFTVSDCKVFGGYVLHIGYISDDCDKLAVGDK 583 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + T+DY R + NH++TH+++ AL +LGS V Q GS + LRFD + +K ++ Sbjct: 584 VETTVDYTRRIPIMSNHTSTHMVNFALRQVLGSTVDQRGSLVDNTRLRFDFSSTKGMSKD 643 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVR-----------V 678 EL + VN++IA+ L V + + A A+ G Y D VR + Sbjct: 644 ELVKTDAIVNELIAKQLNVYCKDVELASAKKIYGLRAVFGEVYPDPVRVVSVGVDVNDLL 703 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 + + +S CGGTH++++ E L IVSE ++ AG+RR+ A+TG A Sbjct: 704 ANPSNTEWANYSIEFCGGTHIANSKEAELFTIVSEEAVSAGVRRLFAVTGTDASVVYDNN 763 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNV----EDL 786 + + K++ ++ V + ++++L+ LQ V ++L Sbjct: 764 RKLETAFTDAAKLTGKDLKDHVPSLLALLESHPVSASKRIELLEKLNNLQTTVKKYFKEL 823 Query: 787 SCHKIADVNFMSHIIS-----------------EVDSKELKSVMDALQKKIQSGIIMLVG 829 I+D N + I +++ + + +QKK IM V Sbjct: 824 ESSSISDSNKVVDEIIAQLTESKAPVHVGVINLGLNNSAITDAIKNVQKKCPDTAIMFVS 883 Query: 830 ISKEKKASVLIVV----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +EKK ++ + + A A+ L GG GGG+ +AQ G Sbjct: 884 PDQEKKKVCVLSIVPPTSTAASKGLTANGWVVKVAEQL-GGKGGGKTDVAQGTGSQIENV 942 Query: 886 DQAIAGVASFLKK 898 D A+ F KK Sbjct: 943 DNAVEFAKDFAKK 955 >gi|323335374|gb|EGA76661.1| Ala1p [Saccharomyces cerevisiae Vin13] gi|323346372|gb|EGA80661.1| Ala1p [Saccharomyces cerevisiae Lalvin QA23] Length = 958 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 296/967 (30%), Positives = 463/967 (47%), Gaps = 93/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+ ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKXYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A L Q Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 ++KLK L L +++ + + +I + + AK++ Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828 Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832 + ++++ + ++ I ++K + ++ ++ I +L G Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGNDP 888 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E + + ++ L + LA+ + ++GG GG+ ++ Q G A+ Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947 Query: 892 VASFLKK 898 + S K+ Sbjct: 948 LESLFKE 954 >gi|291228549|ref|XP_002734240.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii] Length = 1016 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 290/980 (29%), Positives = 456/980 (46%), Gaps = 101/980 (10%) Query: 3 NVSSIRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 IR F+++F++ H +PSSS+IP D TL+FTN+GM FK+IF G P Sbjct: 52 TSGEIRRKFIDYFKEKQSHLFVPSSSVIPREDKTLLFTNAGMNQFKSIFQGAVDPSSPIV 111 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ ++AWDLL Sbjct: 112 KYRRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKETCEMAWDLLIN 171 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + L RLY+T + D E +WK G++ D+I+ N+NFW M GP Sbjct: 172 VYGLSSNRLYVTYFGGNQQLGLSPDIECRNIWKN-IGVAEDRILPYGMNENFWEMGTIGP 230 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CG CSEI +D+ +++ +E+WNLVF+Q+ ++ LP+ +IDTGM Sbjct: 231 CGMCSEIHYDRIGN-RNATSLINKDDPSVLELWNLVFIQYNREEDGCLSKLPQHNIDTGM 289 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHL 279 GLER+ +++Q +NYD DLF+ LIQ ++ T M N + +RV+ DH+ Sbjct: 290 GLERLVSIIQGVDSNYDTDLFQPLIQEIQKCTSMPPYQGLVGDSDNENIDMAYRVLADHI 349 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + I DG P N + Y+++R++RRA+ YA L + L+P + +G AYP Sbjct: 350 RTLTIAITDGARPGNFKQSYIIKRLIRRAVRYATEKLNASPGQFASLVPIVVDTLGDAYP 409 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL+ + + + E++ F K L +G LD +S L + IL GD+A+K+YD G P+ Sbjct: 410 ELLTNPQQVIDVINREEDLFLKQLKKGRKFLDKKISKLKEPRILPGDIAWKMYDGFGFPI 469 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + +G++ + + ++ + + + Sbjct: 470 DLTILMCNEKGVSVDMEGYEEVKEKTHQITSQGGIKNQLEYGFDTNALQQLKHQNIS--- 526 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + C +++ + ++ G+ VE Q +V+ QT Sbjct: 527 -------TTDDSYKYSYECDDDGNYEFEVITAKITSLRVGGQFVESVEPDQSCDVILHQT 579 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI---FVHHAIVERGILRTEMSLVLTI 575 FYAE GGQL D G G Q + I +V H+ + L L L I Sbjct: 580 CFYAEQGGQLWDDGYFTKLGDEAQQIVFEVDNVQIYGGYVVHSGTTKKTLSVGEQLKLHI 639 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 + + R L NH+A H+L+ +L + G + Q GS + PD LRFD T+ +TS ++K I Sbjct: 640 NEERRLGLMRNHTAAHILNWSLRHLHGDGIEQRGSLVAPDRLRFDFTYEDSLTSLQVKEI 699 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683 +D VN++I Q PV ++ + ++A G A+ G Y D V+VVSV Sbjct: 700 QDQVNEVIEQYTPVDSQEVELDEAKQIEGLRAVFGEVYPDPVQVVSVGIPVTGLLTNPFG 759 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + LCGGTHV T I L I+ E + +G+RRI AITG D+ L Sbjct: 760 PGGFMSPVELCGGTHVHMTEHIGKLVIIDEGKVSSGVRRITAITGSDGWEADRKADDLLV 819 Query: 744 SLASFLKVSQGNVVG---------------------------RVEEIWEEYRKLQ---LI 773 ++ K + ++ R E+ EE KL+ Sbjct: 820 KVSELKKQIEESIENLTPSLRVLFDEANNLLEVVGASPIPLWRSRELKEELFKLKEDIKS 879 Query: 774 HAKRKLQLNVEDLSCHKIADVN-------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K++ ++ V++ N + I + ++K L +MD + S I+ Sbjct: 880 FDKKRKKMAVKEAISQAADMANDRLDRPFIVKEIHTGSNTKALMQIMDIFKNTTPSSAIL 939 Query: 827 LVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA--QSGGPNG 882 L G+ K+ + + + ++ A + ++ G GG+ M Q+ N Sbjct: 940 LYGVDKDDCTITCVCYTPKHAIEQGLKANGWLQHVNSLV-DGKVGGQDTMGRLQA--KNV 996 Query: 883 N-----KADQ-AIAGVASFL 896 N K + A S L Sbjct: 997 NLEYLGKLKEIAEQYAKSIL 1016 >gi|323341643|ref|ZP_08081876.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464068|gb|EFY09261.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 869 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 320/908 (35%), Positives = 497/908 (54%), Gaps = 68/908 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M S IRT FL++F+ H + P + L+P +D TL++ NSG+ K F G+ KP Sbjct: 1 MKQLTSSEIRTMFLDYFKAQDHMIEPGAPLVPIDDDTLLWINSGVAALKKYFDGRVKPKK 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TK 116 + VQK +R ND+DNVG+T RHHTFFEMLGNFS G YFKE AI A++ L ++ Sbjct: 61 PRIANVQKSLRT----NDIDNVGKTARHHTFFEMLGNFSIGDYFKEEAIGFAYEFLFSSE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 DLD + Y +V+ +D+EAF +W +S +I+R T+DNFW + + GPCGP SEIF Sbjct: 117 WLDLDVNKAYFSVHTDDQEAFDIWVNKYNVSPSRILR--TDDNFWQIGD-GPCGPNSEIF 173 Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERF---ILPKMSIDTGM 228 +D+GE E +RY+E+WN+VF QF+ + LP+ +IDTGM Sbjct: 174 YDRGEKYDPEHIGERLFFEDLENDRYVEVWNIVFSQFDGVEGGDIHTFKELPQKNIDTGM 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 G ER+ +++Q+ N+D DLF +IQA E +T MKY +N++ +RVI DH+RS F +AD Sbjct: 234 GFERLVSIVQDGDTNFDTDLFIPIIQAIEALTPMKY-QDNVMAYRVISDHIRSLVFTLAD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G + +NEGRGYVLRRI+RRA+ + ++L + L+ + MG +YP L + + +I Sbjct: 293 GAVFSNEGRGYVLRRILRRAVRFGKVLEIEGTFLHGLVDDVIAVMGDSYPNLAEHRDMIV 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + + SE+ERF KTL G LL + ++ ++ GDVAFKLYDT+G P+++ Q+I Sbjct: 353 KLILSEEERFAKTLAGGEKLLLDTI-EANQEAVITGDVAFKLYDTYGFPIELTQEIAEEH 411 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D+ F +LEEQ+ RAR+ + S +++ L ++FI YD+ Sbjct: 412 -HVTVDLDGFKASLEEQKERARSSRQKVESMGSQQ--EDLLNFKENSEFI-YDVFE---- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V + G+ V+ K VVFD+T FYAE+GGQ+ Sbjct: 464 -------------------TQGRVVGLFVDGKRVDSFTG--KGHVVFDKTCFYAESGGQV 502 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + ++ DV+K G + H + G + L ID + R + NHS Sbjct: 503 ADTGTIESDSAKGKVLDVKKANGGQPL-HFVDVDGTITMGQVFDLKIDAKRRILIRKNHS 561 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 HLLH AL +++G HVSQ GS + + RFD +H + +T +L+ +E +N IA++LP Sbjct: 562 CVHLLHSALKSVVGDHVSQAGSYVDDNYFRFDFSHFEKVTDEQLEKVELMINQWIAESLP 621 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + E+A A GA AL Y VRVV++ G S LCGGTH TGEI + Sbjct: 622 ITVVEKPLEEAKAMGAMALFSENYGSVVRVVTM-----GDASMELCGGTHAHGTGEIGVF 676 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767 +VSE S+ +G+RRI T A + + ++ ++ + LK Q ++ ++EE+ E Sbjct: 677 KLVSEESVGSGVRRILGKTSFGAYTSYKETEFEVDAIRTQLKLSPQKSIKTKIEEMEAEM 736 Query: 768 RKLQ----LIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ L+ A E + ++ D++F+ + + + +K +++ ++ + Sbjct: 737 KLLEGKYKLMMADVLKAKTQEYIQMAEVVGNDLSFVWIDMDDQEMNVVKELVERIRDHVD 796 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 I+ V K + ++ ++ + A DLA+ +A V GG GGG+P+ AQ+GG Sbjct: 797 ---IVFVANHKASSVNFVVGCSDKAIKAGVKAGDLAKEAA-VTTGGNGGGKPNFAQAGGK 852 Query: 881 NGNKADQA 888 + K + A Sbjct: 853 DITKIEDA 860 >gi|57524852|ref|NP_001005836.1| alanyl-tRNA synthetase, cytoplasmic [Gallus gallus] gi|53131091|emb|CAG31790.1| hypothetical protein RCJMB04_11d4 [Gallus gallus] Length = 913 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 305/914 (33%), Positives = 459/914 (50%), Gaps = 86/914 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SSS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASQIRQRFIDFFKENQHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTKE Sbjct: 66 LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D E ++W + GL+ +I+ DNFW M +TGPC Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRIGDRD-ASHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+++F KTL RG +LD + +G + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + + + + G Sbjct: 424 LTGLIAEEKGL-VVDMEGFEE----ERKNAQLKSQGKGAGGEDLLMLDI-YAIEELRARG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + VKAI ++ + VEE +GQ+ +V D+T Sbjct: 478 LEVTDDSPKYG----YTSDPSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L+I Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSKEDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQVHLSI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ E+K + Sbjct: 594 DETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQEIKKV 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E N +I + PV R G A+ Y D VRVVS+ Sbjct: 653 EGIANQMIEEAKPVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLADPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---E 740 G + S CGGTH+ ++G IVSE +I GIRRI A+TG AR L + + Sbjct: 713 PAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALRKVESLKK 772 Query: 741 KLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789 L +L + +KV +V + ++ E +++K +L A + L+ ++DL Sbjct: 773 VLSALDAKVKVQTAPNKDVQKEITDLSEMLATAVIPQWQKDELREAVKALKKVMDDLDRA 832 Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 AD+ + + + +K L + + ML + Sbjct: 833 SKADIQKRVLEKTKQVIESHPNQPLVIMEMENGASAKALNESLKLFKTHSPQTATMLFAV 892 Query: 831 SKE-KKASVLIVVT 843 E + + L V Sbjct: 893 DNEAGRITCLCQVP 906 >gi|225351924|ref|ZP_03742947.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157171|gb|EEG70510.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 892 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 313/922 (33%), Positives = 485/922 (52%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++F+K+GH ++PS+SLI N PT +FT +GMVPF G++ P + Sbjct: 1 MRTSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+++++G Y + V R++ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T+P+M LLP M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTDPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E E++ F +TL+ G + D ++ + + ++G+ AFKL+DT+G P++I ++ Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAVSGEDAFKLHDTYGFPIEITLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V +EV+ D+TPFYA+A Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPATIEVILDRTPFYAQA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H+ATH++H AL LG +Q GS P+ LRFD S + + S+E VN+ + Sbjct: 570 ARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARVNEKL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTH+ G Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ G+ A + + L+ + + RV + Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADRVNAL 746 Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816 ++ A + +L +V L A V + + S L+ + + Sbjct: 747 LARLKESDRRLATMYESQLAASVPALVSETKASQAPVKVAAKNVEHFGSFDALRKTVLDV 806 Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G+++E K V + E A DL R ++K+LGGGG GG+P Sbjct: 807 RGQLGEEFPVVVALAGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKILGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVAS 894 AQ GG + K ++A+ +A Sbjct: 866 DFAQGGGADATKINEALEALAD 887 >gi|269218535|ref|ZP_06162389.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211646|gb|EEZ77986.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 888 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 320/921 (34%), Positives = 494/921 (53%), Gaps = 60/921 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F K+ H + PS SL+ DP+++FT +GMVPF E + V Sbjct: 1 MRTAEIRQRWLDYFAKHDHHIAPSVSLVSP-DPSILFTVAGMVPFIPYILNTEPAPWPTV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVGRT RH TFF+M GNFSFG YFKE AI LAW LLT Sbjct: 60 ASVQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAIDLAWGLLTSSLAEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T+++ED ++ W ++ GL +D I ++ + WS + GP G C EI Sbjct: 116 GYGLDGDRLWMTIWEEDAVSYDYWTRVIGLPSDHIQKLPFKEISWSTGQPGPAGACCEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230 +D+G P G P + +G+R++EIWNLVF +F + + L + +IDTG GL Sbjct: 176 YDRGPEYGPDGGPAADVQGDRFLEIWNLVFDEFVRGEGEGHDFELVGKLERTAIDTGAGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ID +I+A+E++ G KY + + V RV+ DH+RSS LI D Sbjct: 236 ERIAYLLQGKANMYEIDEVYPVIRATEEIAGKKYGADAEDDVRMRVVADHVRSSLMLIGD 295 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P N+GRGYVLRR++RRA+ RLLG + ++ L+ M +YPEL I Sbjct: 296 GVRPGNDGRGYVLRRLIRRAVRSIRLLGVDDVVLPSLIATSKDAMKDSYPELEAEFSRIL 355 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + +E+ F +TL G + D S +++L+G AF L+DT+G P+D+ ++ Sbjct: 356 DVASAEEAAFRRTLASGTQIFDLAASKASGGNKVLSGKDAFALHDTYGFPIDLTLEMASE 415 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLLRG 465 +GL +D F + ++EQ+ RARA + +G + ++ L E G+T+F+GY Sbjct: 416 QGLK-VDEGEFRRLMQEQKDRARADARAKKTGHVDSAVYNEILDESGGSTRFLGYSET-- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 G + A++ G V A + +V+VV DQTPFYAE G Sbjct: 473 ---------------------GAEGKIVALLVDGVSVPAATAPAEVDVVLDQTPFYAEMG 511 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G ++ G +Q+ DVQ +G+ VH V G + + ID R Q++ Sbjct: 512 GQLADRGTISVEGGGLVQVDDVQSPVKGLNVHRGTVSEGTIAVGEKVFAQIDVDRRGQIA 571 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +H++TH++H AL LG +Q GS +P LRFD H + I + + IE VND + Sbjct: 572 RSHTSTHMIHKALHEFLGEQATQAGSENSPSRLRFDFRHGEQIPADVVMGIEGRVNDRLR 631 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +NL V IM+ + A A+GA AL G KY VRVVS++ S LC GTHV STG+ Sbjct: 632 ENLEVTDEIMDLDKARAAGAMALFGEKYGKEVRVVSIDDS----WSKELCAGTHVPSTGK 687 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L+ I+ ESSI +G+RRI+A+ G+ A ++ + + LA + + R++ + Sbjct: 688 IGLVSILGESSIGSGVRRIDALVGEGAYAYGAKEHALVSQLAGIVGARPEELPERIDAVL 747 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV-DSKELKSVMDALQK 818 + + A + + + +I + + V ++++V ++ Sbjct: 748 SRLKSAEKEVAALRREKLSARVGDILGGRRRIGKFDLYWAGLGNVASGDDVRTVATDVRG 807 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I +++VG + SV++ T A L +K+LGGGG GGR +A Sbjct: 808 RIDDSEAAVVVVGGVVNGRPSVVVATTSAARQAGARAGKLVSSFSKILGGGG-GGRDDVA 866 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q GG + +K +A+ + + L Sbjct: 867 QGGGQDPSKLLEALEDLEAQL 887 >gi|189218662|ref|YP_001939303.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4] gi|205830140|sp|B3E044|SYA_METI4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|189185520|gb|ACD82705.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4] Length = 926 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 321/969 (33%), Positives = 464/969 (47%), Gaps = 128/969 (13%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 M N + IR +FL+FF++ GH +LPS+SL+P + P L+FTN+GM PF F G++K Y Sbjct: 1 MMNSNEIRQSFLDFFKERGHTILPSASLVPES-PNLLFTNAGMNPFVPFFLGKQKCPYVP 59 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL+ VG HHTFFEMLGN+SF YFKE AI AW+LLT+++ Sbjct: 60 PRIADSQKCLRAGGKHNDLEEVGYDTYHHTFFEMLGNWSFNDYFKEEAIHWAWELLTQKW 119 Query: 119 DLDQRRLYITVYDE--------DEEAFKLW----KKISGLSADKIIRITTNDNFWSMAET 166 + R+Y TVY DEEAF++W +K I T DNFW M ET Sbjct: 120 GFPKERIYATVYKPAPDEPGEFDEEAFRIWFKLFQKAKLNPLLHIHFGTKKDNFWMMGET 179 Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCGPCSEI D ++ IEIWNLVF+Q +LP +DT Sbjct: 180 GPCGPCSEIHIDLTPDGQSEGKLINKNSPLCIEIWNLVFIQLNANEDGSFSLLPSRHVDT 239 Query: 227 GMGLERMATVLQEKT---------NNYDIDLFKHLIQASEQVTGMKY------------- 264 GMGLER+ ++Q + ++YD DLF LI+ + ++ + Y Sbjct: 240 GMGLERVCAIIQGTSSFRQFNRTISDYDTDLFIPLIEKLQDISKVSYTGSIPPTPDFALD 299 Query: 265 -EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323 + + RVIVDH+R+ +F IADGILP+N GRG+VLRR++RRA+ + ++LG P + Sbjct: 300 PQLKKDIAFRVIVDHVRALAFAIADGILPSNLGRGHVLRRLLRRAIRFGQILGVNPPFLF 359 Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEI 381 ++ L MGS YPELI + IEE + SE+E F +TL GL L + + + K + Sbjct: 360 EMVDPLVKIMGSHYPELIDKQGHIEEVISSEEELFARTLSHGLALFEEIKQKMIAEKRKE 419 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 ++G AF LYDT+G PLD+ Q + +G + +D F + + EQR R+ Sbjct: 420 ISGKEAFVLYDTYGFPLDLTQLLAKEQGFS-VDTQGFERLMAEQRRRSLLSHEE------ 472 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + +QF+GY+ L + Sbjct: 473 -----DIVSLTKTSQFVGYEELEAEAEVVVLLSANR------------------------ 503 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 +FD+TPFYAE GGQ+GD G + D ++++ D K A G VH Sbjct: 504 -----------AIFDRTPFYAEMGGQVGDKGYVVFDQKKIEVLDTMKSASGAHVHRLAFT 552 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 + + + L +D + RR ++ +H+ATHLLH AL +LG Q GS + PD LRFD Sbjct: 553 DDL-KPGSRVYLQVDEKRRRCIAAHHTATHLLHWALRKVLGPETLQRGSYVGPDRLRFDF 611 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVS 680 +H+ P+++ EL IE VN+ I N PV + E + L G KY RVR+VS Sbjct: 612 SHTGPLSAEELAEIERLVNEKIELNDPVTAEEESYEKVKNNPDILQLFGEKYGQRVRIVS 671 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 V G +S LCGGTHV STGEI I+ E + AGIRRIEA G+ L Q Sbjct: 672 V-----GRYSKELCGGTHVRSTGEIGYFKILGEYGVSAGIRRIEAACGKALEQFLHAQAA 726 Query: 741 KLKSLASFLKVSQGNVV----------------------GRVEEIWEEYRKLQLIHAKRK 778 + L ++ + +E ++ + + AK++ Sbjct: 727 EQDKKWQILHSKDPSLPRLSKWVDTLDLDSLIEIFQRRNEELSSFEKEIKEREKLRAKKQ 786 Query: 779 L---------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 Q KI + + L + + + K+I S + ++ Sbjct: 787 EENFRREASQQAMAAIAQVEKIGAIPVLFLDCDAKPQSYLPLLWNEISKRIDS--VAILA 844 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K ++ I V L + A +L G GGG +AQ G + + Sbjct: 845 SRSEGKINLFIGVGPSLTTKIEARNLLSQLVASFE-GKGGGSKTIAQGGLKDSIEISSLF 903 Query: 890 AGVASFLKK 898 L++ Sbjct: 904 EKGRGILEQ 912 >gi|239622020|ref|ZP_04665051.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515211|gb|EEQ55078.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 893 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+EQ++G+KY N + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523 + V I+Q+G+ V VEV+ D+TPFYAE Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509 Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 AGGQL D G + D L++ DVQK + + VH + G L + ID R Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND Sbjct: 570 ITRSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTHV Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815 + + ++ A + +L +V L + + V L+ + Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806 Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 ++ ++ ++ L G++++ K V + E A DL R +AKVLGGGG GG+ Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P AQ GG + +K D+A+ + +K Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892 >gi|23334993|ref|ZP_00120231.1| COG0013: Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|23465456|ref|NP_696059.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705] gi|189439479|ref|YP_001954560.1| alanyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|227545932|ref|ZP_03975981.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322688960|ref|YP_004208694.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F] gi|322690929|ref|YP_004220499.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|41018234|sp|Q8G5W9|SYA_BIFLO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|23326108|gb|AAN24695.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705] gi|189427914|gb|ACD98062.1| Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|227213566|gb|EEI81415.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517003|emb|CBK70619.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum F8] gi|320455785|dbj|BAJ66407.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460296|dbj|BAJ70916.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F] Length = 893 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+EQ++G+KY N + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523 + V I+Q+G+ V VEV+ D+TPFYAE Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509 Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 AGGQL D G + D L++ DVQK + + VH + G L + ID R Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTHV Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815 + + ++ A + +L +V L + + V L+ + Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806 Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 ++ ++ ++ L G++++ K V + E A DL R +AKVLGGGG GG+ Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P AQ GG + +K D+A+ + +K Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892 >gi|254796550|ref|YP_003081386.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois] gi|254589786|gb|ACT69148.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois] Length = 848 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 351/898 (39%), Positives = 514/898 (57%), Gaps = 66/898 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R F++FF KNGH LPS+SL+P +DP+LMF N+GMVPFK F +K + ++ T QK Sbjct: 5 LRKKFIDFFVKNGHTHLPSASLVPKDDPSLMFVNAGMVPFKEYFADVKKAPFSSIVTAQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW +T+E L + +LY Sbjct: 65 CVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELKLSKEKLY 124 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ITVY ED+EAF++W K++G KI RI+T+DNFW M + GPCGPCSEIF+D GE + G Sbjct: 125 ITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHLSGD 184 Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 +P +++ GER +EIWNLVFMQ+ ++ E + IDTGMGLER+A +L+ +NY Sbjct: 185 IPEDNKDPGERCVEIWNLVFMQYIRKQSGELARMECPCIDTGMGLERVAAILEGTDDNYK 244 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 LF+ +++ S++VTG K N H+VI DHLRS+SFLIADG+LP N GR YVLRRI+ Sbjct: 245 TKLFEAIVKESQKVTGNKD---NQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRII 301 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA+ Y+ +LG+ L+ L L MGS Y EL +AK LI +TL E+E F TL G Sbjct: 302 RRAVRYSHVLGFDTVLLPKLFWVLEECMGSYYQELTRAKNLILDTLTLEEESFRNTLKSG 361 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 + LL+ V S + + L+GD+AF LYDTHG PLDI D+L + +D F + ++ Q Sbjct: 362 MKLLEEVSSSMKGGDTLSGDIAFTLYDTHGFPLDITIDVLKEK-KISVDEERFAERMKMQ 420 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 R A+A + + T+ ++ ++G T FIGY+ G Sbjct: 421 RLLAQASRMNDTAQTSSYEVKAVFLEHGKTPFIGYENFTGL------------------- 461 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 +++ AI E ++ ++ DQT FY E+GGQ D G G+ L++ Sbjct: 462 ----ALILAI-------TEKEGSNELTIILDQTIFYPESGGQESDQGIIEGENTTLKVEK 510 Query: 546 VQKKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 V K EG+ +H + +G + + L ID R L+ NHSATH+LHH L LG+H Sbjct: 511 VYKSTEGVILHECKIIKGQAISRGEKVNLKIDINRRNSLARNHSATHVLHHVLRKRLGTH 570 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 VSQ GS +TP+ LRFD +HS+PIT EL IED +N +I + PV+T + +DAI GA Sbjct: 571 VSQRGSLVTPNRLRFDFSHSQPITEEELSKIEDCINLMIWDDHPVITEVKKTDDAIRDGA 630 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 L G KY+D VRVVS+ + LCGGTHV + I L+ I+S SS+ G+RRIE Sbjct: 631 IGLFGEKYDDTVRVVSIGE------AVELCGGTHVKKSSSIGLVKILSASSVAHGVRRIE 684 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNV 783 A+T A ++ + + L + ++ + Q + + Sbjct: 685 AVTHLTALQYMRE------EIQAQL----YQLNEHQSKLKTMQKSHQKEITSVYQSIVAN 734 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 + + V ++ + + + L S+ ++ + ++++ + +LI++ Sbjct: 735 AEAQTERYGSVEIVTKNVQGISREILLSLASGIRPRTG---VLIIHTELSEALYLLIILD 791 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGR-----PHMAQSGGPNGNKADQAIAGVASFL 896 +++ + +D + G G+ P++ Q+ P D+ + ++ + Sbjct: 792 KEICKNISFIDSMKE-----RIGKSHGKVTPSVPYVIQATFPEKEDLDRCLKNLSKLV 844 >gi|119484060|ref|XP_001261933.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181] gi|119410089|gb|EAW20036.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181] Length = 961 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 297/981 (30%), Positives = 470/981 (47%), Gaps = 119/981 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 +R TFL++F++NGH +PSS ++P +DPTL+FTN+GM FK+IF G P Sbjct: 12 TAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAK 71 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK Sbjct: 72 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 131 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD +RLY+T ++ D EA LW+ +G+ D I+ DNFW M + GPC Sbjct: 132 YGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQGPC 190 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ +++ + LP +DTGMG Sbjct: 191 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMG 249 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L A + + G +RV+ DH+R Sbjct: 250 FERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGMFGADDSDGIDTAYRVVADHVR 309 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG+ P ++GRGYV+RR++RR YAR E ++P L ++G +P Sbjct: 310 TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFP 369 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + E L E+ F KTLDRG + + + D+ L+G ++LYDT G Sbjct: 370 ELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D+ R RA+ S G T + + + Sbjct: 430 PVDLTRLMAEERGLNIDDLEFEEA-----RLRAKEASKGQKKSATGTVKLDVHDLG---- 480 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K K + +++ +KAI + G+++ + Sbjct: 481 ----------KLEKMNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGI 530 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG I DG + G +H ++ G +++ Sbjct: 531 ILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYAGYVLHTGFMKYGSFSIGDAVLC 590 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T EL+ Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 650 Query: 634 SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681 IE+ + I QN V + SG A+ G Y D VR + +V Sbjct: 651 KIEEISTEYIRQNCDVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 710 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 E S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 711 EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVAKEF 770 Query: 737 --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772 ++++ K + L + V + +++ + + Q Sbjct: 771 EKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKAQQK 830 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830 + K+ L+ + + + ++K + ++ ++ K+Q + +L G Sbjct: 831 LETKKALEAIISYFESPTNEGKTCLVTRLPISANAKAVSESLNYVKSKLQDKTVYVLAGD 890 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV------------LGGGGGGGRPHMAQS 877 S++ + + V++ LLD +A DLA + + V +G Sbjct: 891 SEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGN------------ 938 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + +K + AIA + +L K Sbjct: 939 -GVHPDKIEDAIALASDYLAK 958 >gi|329946643|ref|ZP_08294055.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526454|gb|EGF53467.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 903 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 305/936 (32%), Positives = 482/936 (51%), Gaps = 74/936 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L++F N HE+ PS SL+ P+++FT +GMVPF G E+ + Sbjct: 1 MRTSEIRSRWLDYFAANKHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEEAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVG T RH TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 ASVQKCIRT----NDIDNVGVTTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T++++D+ + W + G+ A++I + D WS + GP G C EI Sbjct: 116 GYGLDGDRLWMTIWEKDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230 +D+G P G P +G+R++EIWNLVF +F + + L + +IDTG GL Sbjct: 176 YDRGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279 ER+A ++Q+K N Y+ID +I+A+E+++G Y ++ V RV+ DH+ Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIRAAEELSGKVYGRGSAGPEAGDAYHDDVRMRVVADHV 295 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS+ LI+DG+ P N+GRGYVLRR++RRA+ RLLG E M LL M ++YPE Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKASYPE 355 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDT 393 L + I E E++ F +TL G +LD ++ K +++G AF+L+DT Sbjct: 356 LETSWSAISEIAFGEEDAFRRTLTAGTTILDTAVASAKKDAGRTGRPLMSGRSAFELHDT 415 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451 +G P+D+ ++ +G +D +F + EQ+ RARA + +G + F EK Sbjct: 416 YGFPIDLTLEMAAEQG-VDVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 G + F+GY + + V ++ G S +V Sbjct: 475 GGGSAFLGYTE-----------------------SSAEASVAGVLVDGVPQSVVTSPAEV 511 Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 EV+ D+TPFYAE GGQL D G + DG +++ DVQ +G+ VH + G + Sbjct: 512 EVILDRTPFYAEMGGQLADQGTIRLADGGTVEVNDVQAPVKGLHVHRGTLTEGTIAVGEK 571 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ID R ++ H++TH++H AL I+ + +Q GS +P +RFD H + Sbjct: 572 AFAQIDVARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALAGE 631 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 ++ IE+ VN ++++L V +M+ + A A+GA AL G KY VRVVS+ GG S Sbjct: 632 QVAGIEERVNAKLSEDLTVTDEVMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWS 687 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LC GTHV +TG I + +V ESSI +G+RRI+A+ G A + + + +++ + Sbjct: 688 KELCAGTHVPTTGHIGRIAVVGESSIGSGVRRIDALVGDGAYGYQAKEHALVSQISTMVG 747 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD 805 + RVE + + + A + + + +V S + V Sbjct: 748 GRPEELPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVPVGEVRLASANLGSVG 807 Query: 806 -SKELKSVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 + ++S+ + ++ ++ + + + V+ A L R +A+ Sbjct: 808 AADAVRSLTLDARSRLGDSEPAVVAVGAVLNSRPVIVVATNAGARDKGIRAGALVRTAAQ 867 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 VL GGG GG+ +AQ GG N + D+A+ VA ++ Sbjct: 868 VLDGGG-GGKDDLAQGGGQNPDALDEALRTVADQIR 902 >gi|312132886|ref|YP_004000225.1| alas [Bifidobacterium longum subsp. longum BBMN68] gi|311773857|gb|ADQ03345.1| AlaS [Bifidobacterium longum subsp. longum BBMN68] Length = 893 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+EQ++G+KY N + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523 + V I+Q+G+ V VEV+ D+TPFYAE Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509 Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 AGGQL D G + D L++ DVQK + + VH + G L + ID R Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTHV Sbjct: 630 LRDNLAVATKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815 + + ++ A + +L +V L + + V L+ + Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806 Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 ++ ++ ++ L G++++ K V + E A DL R +AKVLGGGG GG+ Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P AQ GG + +K D+A+ + +K Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892 >gi|609338|gb|AAC49007.1| cytoplasmic alanyl-tRNA synthetase [Saccharomyces cerevisiae] gi|1097386|prf||2113423A Ala-tRNA synthetase Length = 958 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 296/967 (30%), Positives = 463/967 (47%), Gaps = 93/967 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + LY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDSLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKRTKSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A L Q Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 ++KLK L L +++ + + +I + + AK++ Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828 Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832 + ++++ + ++ I ++K + ++ ++ I +L G Sbjct: 829 NKQTLDEVKTFLQTNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGNDP 888 Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E + + ++ L + LA+ + ++GG GG+ ++ Q G A+ Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947 Query: 892 VASFLKK 898 + S K+ Sbjct: 948 LESLFKE 954 >gi|302838115|ref|XP_002950616.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f. nagariensis] gi|300264165|gb|EFJ48362.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f. nagariensis] Length = 1143 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 307/981 (31%), Positives = 456/981 (46%), Gaps = 115/981 (11%) Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP---------------------- 45 R F EFF+ H SSS++P NDPTL+FTN+GM Sbjct: 183 RAAFNEFFETKAHTYWASSSVVPHNDPTLLFTNAGMNQASDQSQGQANWQHHHAYLPHSW 242 Query: 46 FKNIFTGQEKPVY-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100 FK +F G P + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG Sbjct: 243 FKPVFLGTVDPNSDMGKLKRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 302 Query: 101 YFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKII 152 YFKE AI AW+LLTK + L RLY T + D+EA ++W + L +++ Sbjct: 303 YFKEEAISWAWELLTKWYKLPADRLYATYFRGDPGQGLPADDEAREIWLRF--LPESRVL 360 Query: 153 RITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN 212 +NFW M + GPCGPC+EI FD+ + + +EIWN VF+QF ++ Sbjct: 361 PYGNKENFWEMGDQGPCGPCTEIHFDRI-GGRDAADLVNADDPNVLEIWNNVFIQFNREP 419 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMK 263 LP +DTGMGLER+ +VLQ K +NY DLF + A +QVT G + Sbjct: 420 DGTLKTLPAKHVDTGMGLERITSVLQGKMSNYATDLFGPIFDAIQQVTGARTYTDKIGKE 479 Query: 264 YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLM 322 + +RV+ DH+R+ SF IADG P NEGR YVLRRI+RRA+ Y R LG E Sbjct: 480 DADGVDMAYRVVADHIRTLSFSIADGARPGNEGRDYVLRRILRRAVRYGRETLGAKEGFF 539 Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382 L+ + G +PEL++ + I LR E+ F +TL +G+ + D + Sbjct: 540 AGLVDVVVANFGGFFPELVKQRDTIYSVLREEEAAFSRTLVKGIERFKKA-ASAATDNKI 598 Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442 G AF L+DT+G P+D+ Q + RG+ +D+ ++ AL E R ++R Sbjct: 599 PGYEAFVLWDTYGFPVDLTQLMAEERGMT-VDMPAYEAALNEAREKSRQGGKKAAGAGI- 656 Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502 +F + +++ + L P ++ VS+ V AI+ G V Sbjct: 657 -------------KF----EAEATGWLQSNGVPLTNDAPKYGSSDVSAKVLAILTPGGFV 699 Query: 503 ----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558 E A V +V D T FYAE+GGQ+GDTG G + + A G +H Sbjct: 700 ASTSEAADQDGPVGLVLDTTSFYAESGGQIGDTGAIRGPEGAALVVSDCQVAAGFVLHVG 759 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 R + +++DY+ R + NH+ TH+L+ AL + LG HV Q GS + PD LR Sbjct: 760 EASVAPFRVGDEVTVSVDYERRSLIKPNHTFTHVLNFALKSTLGDHVDQKGSIVLPDKLR 819 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVR 677 FD +++ P+ + +L ++E + +A +PV + + + +G A+ G Y D VR Sbjct: 820 FDFSNAGPVEANQLAAVEKICREAVAAAMPVHSGEVPLAQARSINGLRAVFGEVYPDPVR 879 Query: 678 VVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 VVS+ S CGGTH+S+T E ++SE I GIRRI A+ Sbjct: 880 VVSIGRAVEELLADPKDAANAAFSIEFCGGTHLSNTSEAEAFALLSEEGIAKGIRRIVAV 939 Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNV 783 T A + + LAS + + + + E + A + +L V Sbjct: 940 TRGDAVRAIEAAADLKAELASIATLPEDQLEKACKGFKESVDAAVIPAVDKAALRDELAV 999 Query: 784 EDLSCHKIA-------------------------DVNFMSHIIS-EVDSKELKSVMDALQ 817 + +F+ + +D++ + A+ Sbjct: 1000 LGRRVIEFQKAAAAANKALAAERAVAAADAAVAAGKSFVIGRLDVGLDTRAVGEACSAII 1059 Query: 818 KKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 K + + V + E KA V + + DR A + + LGG G GG+ + AQ Sbjct: 1060 AKHSTLAALFVSVDAEKGKALAYAAVPDSVTDRLKANEWVSTALGPLGGKG-GGKANNAQ 1118 Query: 877 SGGPNGNKADQAIAGVASFLK 897 G N K D+A+ +F + Sbjct: 1119 GQGANVEKVDEALGAATAFAE 1139 >gi|317482215|ref|ZP_07941237.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA] gi|316916353|gb|EFV37753.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA] Length = 893 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+EQ++G+KY N + RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523 + V I+Q+G+ V VEV+ D+TPFYAE Sbjct: 472 ----------------------SARAEVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509 Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 AGGQL D G + D L++ DVQK + + VH + G L + ID R Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTHV Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746 Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815 + + ++ A + +L +V L + + V L+ + Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806 Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 ++ ++ ++ L G++++ K V + E A DL R +AKVLGGGG GG+ Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P AQ GG + +K D+A+ + +K Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892 >gi|15617007|ref|NP_240220.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134963|sp|P57483|SYA_BUCAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|25293087|pir||B84977 alanine-tRNA ligase (EC 6.1.1.7) [imported] - Buchnera sp. (strain APS) gi|10039072|dbj|BAB13106.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 878 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 318/911 (34%), Positives = 508/911 (55%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF++ GH ++PSSSL+P ND TL+FTN+GM FK IF G++K Y V Sbjct: 3 KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT K F+ Sbjct: 63 ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + Q +L+I+VY +D E +K+W I + +++IIRI +NFW M +TGPCGPC Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D + + E R++EIWN+VF++F + +K + L SIDTGMGLE Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY ID+F+ LI+ Q++ + + ++ +VI DH+RS S++IAD IL Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGY+LRRI+RRA+ + +G + L+ ++ MG L + + IE L Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+ +F TL++GL +L+ + + + IL+G AF LYDT G P+D+ D+ + + Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID S+ A E+Q+ ++ + + I F GY Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGYTKT-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+VK I + V + + +K + D+TPFY+E+GGQ+GD Sbjct: 465 ---------------ITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +K + H + G + SL ID R + +NHSATH Sbjct: 510 GQLYHKKSSFLVEKTKKYGKT-IGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH L ILG + Q GS +T LRFD ++ K I +++++ IE+ +N I N+ + T Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +N E+A A AL +Y VRVV + S LCGGTH TG+I L I+ Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S+SS+ +GI+RIEA+TGQ+A +L +D +K ++ L S ++ + +++ + + L+ Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + N + + +I +++I + + K L+ ++D L+K++++ II+ Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + ++++ VT +LLD A+ + + G G GG+ +A+ GG N + Sbjct: 804 -LINIINNRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKG-GGKKEIAEGGGANTKQLP 861 Query: 887 QAIAGVASFLK 897 + + ++ Sbjct: 862 SILNTIKLWIN 872 >gi|317036398|ref|XP_001398230.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS 513.88] Length = 1019 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 287/912 (31%), Positives = 439/912 (48%), Gaps = 93/912 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 +R TFL++F++NGH + SS ++P +DPTL+FTN+GM FK+IF G P Sbjct: 70 TSKRVRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAN 129 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK Sbjct: 130 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKI 189 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RRLY+T ++ D EA LW K G+ D I+ DNFW M + GPC Sbjct: 190 YGLDPRRLYVTYFEGNKEGGLEPDLEAKDLW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 248 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 249 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMG 307 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ K++NYD D+F + Q V G +RVI DH+R Sbjct: 308 FERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVR 367 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + F I+DG +P N+GRGYV+RR++RR YAR E ++P + ++G +P Sbjct: 368 TLMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFP 427 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + E L E+ F KTLDRG + + + L+G ++LYDT G Sbjct: 428 ELRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADVWRLYDTFGF 487 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D RSRA+ S G + E + + + Sbjct: 488 PVDLTRIMAEERGLQIDDREFEEA-----RSRAKEASRGQKKTSAETVKLDVHDLG---- 538 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K + +++ VKAI +E G+++ + Sbjct: 539 ----------KLEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDGEQLGI 588 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG + DG + G +H ++ G +++ Sbjct: 589 ILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYAGYVLHTGFMKYGSFSVGDTVIC 648 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL T+LG V Q GS + + LRFD +H I+ +L Sbjct: 649 EYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAISDKDLA 708 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682 IE+ + I QN V ++ + A SG A+ G Y D VRVVSV Sbjct: 709 RIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELGEILQNV 768 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 S CGGTHV TG+I L ++ E I GIRRI A+TG+ A Sbjct: 769 KDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDAHEVQRLAAEF 828 Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEE----YRKLQL 772 ++++ K + + L V + R I +E + LQ Sbjct: 829 QKRLDLLEAMPLTPEKEKEAKQIQAELNQLSISAVQKSAFRERFARINKEVIDGQKALQK 888 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830 + +K L+ + D +++ + +SK + ++ ++ K+ + +L Sbjct: 889 LESKVALETITNYFQAPENQDRSWLVAKLPISANSKAISESLNYVKSKLPDKSVYVLAAS 948 Query: 831 SKEKKASVLIVV 842 + + + + V Sbjct: 949 TDQGRVAHGCYV 960 >gi|299751839|ref|XP_001830532.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130] gi|298409558|gb|EAU91282.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130] Length = 968 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 294/979 (30%), Positives = 450/979 (45%), Gaps = 107/979 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R F E+F+ H + SS IP +DPTL+F N+GM +K+IF G P Sbjct: 12 TSRRVREEFFEYFRARDHTFVRSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSELSK 71 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLT+ Sbjct: 72 VKRAFNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIKYSWDLLTRV 131 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSM------ 163 + L RLY+T ++ D EA + W + L D+++ DNFW Sbjct: 132 YGLSPDRLYVTYFEGDPANGLEPDLEAKECWLEY--LPEDRVLPGNAKDNFWGAWCHPPE 189 Query: 164 -------AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216 G EI +D+ +++ +EIWN VF+QF ++ Sbjct: 190 LDLANRRGRDGRYRSLREIHYDRI-GGRQAAHLVNQDDPDVLEIWNNVFIQFNREPDGTL 248 Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------- 268 LP +DTGMG ER+ +V+Q+K +NYD D+F + ++++G++ Sbjct: 249 KPLPAKHVDTGMGFERLVSVIQDKRSNYDTDVFTPIFAKIQELSGVRPYEGRFGADDADG 308 Query: 269 -IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHL 325 +RV+ DH+R+ +F ++DG +P N GRGYVLRR++RR YAR LG L Sbjct: 309 IDTAYRVVADHVRTLTFALSDGGVPNNVGRGYVLRRVLRRGSRYARKKLGVPIGSFFSSL 368 Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILN 383 +P + MG +PE+ + I+E L E+E F +TLDRG L D + + L+ Sbjct: 369 MPVVVETMGDIFPEITKKVDDIKEILDEEEESFSRTLDRGEKLFDQYAAKAKAEGRKELS 428 Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443 G ++LYDT+G P+D+ + + GL D F +A + + ++ + + + Sbjct: 429 GADVWRLYDTYGFPVDLTRLMAEELGLGINDAE-FEEAQRKSKEASKGTAKKDTAEIVKL 487 Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503 L K+D T +++ VKAIV + + Sbjct: 488 DVHELA-----------------ILEKDDSVPKTDDSAKFGTGNITATVKAIVYDKKFLT 530 Query: 504 E---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 V+ D+T FYAE+GGQ DTG + DG + G VH + Sbjct: 531 STQDIPEDATFGVILDKTSFYAESGGQEYDTGNIVIDGAADFEVTNVQVYNGYVVHTGHL 590 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 + G L ++ + D R L NH+ATH+L+ AL +LG HV Q GS + P LRFD Sbjct: 591 KYGQLDVGSEVISSYDELRRWPLRNNHTATHILNFALREVLGDHVDQKGSLVAPTKLRFD 650 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679 +H IT EL IE D I +N+ V + ++ A G A+ G Y + VRVV Sbjct: 651 FSHKAGITLPELTKIESMSIDWIKKNVKVYGKDLDLNLAQKIPGLRAVFGETYPNPVRVV 710 Query: 680 S-----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 + +E S CGGTHV+ TG+I I ES I GIRRI A+TG Sbjct: 711 TLEYSVDEIAADIENPKWRQTSIEFCGGTHVAKTGDIKGFVITEESGIAKGIRRIIAVTG 770 Query: 729 QRARS---HLMGQDEKLKSLASF--------LKV-------------SQGNVVGRVEEIW 764 A +EKL + LK + + ++ + Sbjct: 771 HEAAEVTRVAQALEEKLNQADALDGKAKDAALKALTVELGQADISVLKKAELKDKLNAMR 830 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQ 821 + + K + +ED H + + N +++ + + ++K L+S+ A +K + Sbjct: 831 KAFDKAVKEKEAAAGKKALEDFQKHFVENPNAQVYIALVEAGGNAKLLQSIATAARKAEK 890 Query: 822 SGIIMLVGISKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S I + E K + V +L +A A ++ GG GG+ AQ G Sbjct: 891 S--IYVFSHDAEQGKVPHVNYVAPNLKAQGVDARQWAAKVTDLI-GGKAGGKEESAQGVG 947 Query: 880 PNGNKADQAIAGVASFLKK 898 +K +AIA ++K Sbjct: 948 SEASKLQEAIAAARQHVEK 966 >gi|219682314|ref|YP_002468698.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622047|gb|ACL30203.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086140|gb|ADP66222.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086713|gb|ADP66794.1| alanyl-tRNA synthetase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087298|gb|ADP67378.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087809|gb|ADP67888.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 878 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 318/911 (34%), Positives = 508/911 (55%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF++ GH ++PSSSL+P ND TL+FTN+GM FK IF G++K Y V Sbjct: 3 KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT K F+ Sbjct: 63 ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + Q +L+I+VY +D E +K+W I + +++IIRI +NFW M +TGPCGPC Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D + + E R++EIWN+VF++F + +K + L SIDTGMGLE Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY ID+F+ LI+ Q++ + + ++ +VI DH+RS S++IAD IL Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGY+LRRI+RRA+ + +G + L+ ++ MG L + + IE L Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+ +F TL++GL +L+ + + + IL+G AF LYDT G P+D+ D+ + + Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID S+ A E+Q+ ++ + + I F GY Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGYTKT-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+VK I + V + + +K + D+TPFY+E+GGQ+GD Sbjct: 465 ---------------ITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +K + H + G + SL ID R + +NHSATH Sbjct: 510 GQLYHKKSSFIVEKTKKYGKT-IGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH L ILG + Q GS +T LRFD ++ K I +++++ IE+ +N I N+ + T Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +N E+A A AL +Y VRVV + S LCGGTH TG+I L I+ Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S+SS+ +GI+RIEA+TGQ+A +L +D +K ++ L S ++ + +++ + + L+ Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + N + + +I +++I + + K L+ ++D L+K++++ II+ Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + ++++ VT +LLD A+ + + G G GG+ +A+ GG N + Sbjct: 804 -LINIINNRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKG-GGKKEIAEGGGANTKQLP 861 Query: 887 QAIAGVASFLK 897 + + ++ Sbjct: 862 SILNTIKLWIN 872 >gi|46108048|ref|XP_381082.1| hypothetical protein FG00906.1 [Gibberella zeae PH-1] Length = 957 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 310/966 (32%), Positives = 471/966 (48%), Gaps = 93/966 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE---KPVY-- 58 + +R TF E+F++ GH ++PSSS++P NDPTL+FTN+GM FK IF G P+ Sbjct: 10 AARVRKTFFEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDPMASL 69 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +A QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + Sbjct: 70 KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWELLTKVY 129 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY+T ++ DE EA +LW G+ D I+ DNFW M + GPCG Sbjct: 130 GLDPSRLYVTYFEGDEKLKLEPDLEAKELWIS-VGVPEDHILPGNMKDNFWEMGDQGPCG 188 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ + + +E+WN VFMQ+++Q LP IDTGMG Sbjct: 189 PCSEIHYDKV-GGRNASSLVNMDDPMVVEVWNNVFMQYDRQKDGSLKSLPAKHIDTGMGY 247 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRS 281 ER+ + LQ+ +NY D F L Q ++V G +RV+ DH+R+ Sbjct: 248 ERLVSALQDTVSNYATDCFTPLFQKIQEVTGARPYTDKYGKDDADGIDTAYRVVADHIRT 307 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 SF IADG +P N+GRGYV+RR++RR + YAR + +LPAL +MG +PE Sbjct: 308 LSFSIADGAVPNNDGRGYVIRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQFPE 367 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397 L++ + I+E L E+ F KTLDRG + + K+ + L GDV ++LYDT G P Sbjct: 368 LVKKQQDIKEILDEEEVAFAKTLDRGEAQFEKYAAEATKNGAKKLQGDVVWRLYDTFGFP 427 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + R L D + + +AR S + F Sbjct: 428 VDLTRLMAEERNLEIDDEEV-----KAAQDKAREASKAVKESVQ--------------TF 468 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVV 514 ++ + S+ K+ + L ++ V+ I ++ + + ++ Sbjct: 469 AKLNVHQISELEKDLKVERTNDDAKFLLGDSNAQVQLIYDGTSFLKSTKDVPEKTALGLL 528 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ DTG + D + + G +H+ +E G L + ++ Sbjct: 529 IDKTNFYAESGGQVADTGRIVIDDVAEFKVLDVQNYGGYVLHNGYIEYGTLSSGDKVICE 588 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D R + NHS TH+L+H+L +LG V+Q GS + D LRFD +H + ELK Sbjct: 589 YDELRRSPIRNNHSGTHILNHSLREVLGDEVNQKGSLVDSDKLRFDFSHKTGVKIEELKK 648 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682 IE+ N+ I + + ++ ++ E A G A+ G Y D VRVVS+ Sbjct: 649 IEEMSNEYIRRGQKIYSKEVDLEKARQIEGCRAVFGETYPDPVRVVSIGKDIDEMLADPK 708 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736 + +S CGGTHV TG I L ++ ES I GIRRI A TG+ A Sbjct: 709 KPEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREADEFS 768 Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777 ++ ++K+++ L +++ + R ++I Q K Sbjct: 769 KKIDALDQLPLGPEKEAQMKAVSVELSQLTISTLTKDDFNKRYQKINAAVTAEQKKRQKA 828 Query: 778 KLQLNVEDLSCH--KIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + + ++ + H D F+ + SK L V+ Q K + + + G SKE+ Sbjct: 829 ESKTALDTVKKHFDTNKDAKWFVGRLPVGATSKALMEVVKHYQGKDKEKTVYVFGGSKEE 888 Query: 835 KASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 A + V T A A ++V+GG GG P Q G D+ + Sbjct: 889 GAVAHGVYVGTHLASQGVTAEQWAASVSEVIGGRSGGKEPTR-QGQGTKPENLDEGVETA 947 Query: 893 ASFLKK 898 +L + Sbjct: 948 TKWLDE 953 >gi|219681759|ref|YP_002468145.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471461|ref|ZP_05635460.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624602|gb|ACL30757.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 878 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 318/911 (34%), Positives = 508/911 (55%), Gaps = 56/911 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR FL+FF++ GH ++PSSSL+P ND TL+FTN+GM FK IF G++K Y V Sbjct: 3 KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT K F+ Sbjct: 63 ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 + Q +L+I+VY +D E +K+W I + +++IIRI +NFW M +TGPCGPC Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D + + E R++EIWN+VF++F + +K + L SIDTGMGLE Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ +NY ID+F+ LI+ Q++ + + ++ +VI DH+RS S++IAD IL Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGY+LRRI+RRA+ + +G + L+ ++ MG L + + IE L Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+ +F TL++GL +L+ + + + IL+G AF LYDT G P+D+ D+ + + Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID S+ A E+Q+ ++ + + I F GY Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGYTKT-------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S+VK I + V + + +K + D+TPFY+E+GGQ+GD Sbjct: 465 ---------------ITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +K + H + G + SL ID R + +NHSATH Sbjct: 510 GQLYHKKSSFIVEKTKKYGKT-IGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH L ILG + Q GS +T LRFD ++ K I +++++ IE+ +N I N+ + T Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +N E+A A AL +Y VRVV + S LCGGTH TG+I L I+ Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKII 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S+SS+ +GI+RIEA+TGQ+A +L +D +K ++ L S ++ + +++ + + L+ Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISFLLNCSTVDIKEKTKKLTIKTKNLE 743 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + N + + +I +++I + + K L+ ++D L+K++++ II+ Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + ++++ VT +LLD A+ + + G G GG+ +A+ GG N + Sbjct: 804 -LINIINNRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKG-GGKKEIAEGGGANTKQLP 861 Query: 887 QAIAGVASFLK 897 + + ++ Sbjct: 862 SILNTIKLWIN 872 >gi|227496182|ref|ZP_03926488.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434] gi|226834265|gb|EEH66648.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434] Length = 904 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 310/936 (33%), Positives = 483/936 (51%), Gaps = 75/936 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L++F GHE+ PS SL+ P+++FT +GMVPF G E+ + Sbjct: 1 MRTSEIRSRWLDYFASQGHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEQAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVGRT RH TFF+M GNFSFG YFKE AI AWDLLT Sbjct: 60 ASVQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAISYAWDLLTGPQSEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T++++DE ++ K+ G+ + ++ + WS + GP G C EI Sbjct: 116 KYGLDGDRLWMTIWEKDEVSWNHLTKVIGVPQQHVQKLPFEEISWSTGQPGPAGACCEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230 +D+G P G P + +G+R++EIWNLVF +F + + L + +IDTG GL Sbjct: 176 YDRGAQYGPDGGPVADAQGDRFLEIWNLVFDEFLRGEGEGHDFELVGKLDQTAIDTGAGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279 ER+A ++Q+K N Y+ID +I A+E ++G KY + V RV+ DH+ Sbjct: 236 ERLAFIMQDKPNMYEIDEVYPVIAAAEAMSGKKYGLGAAGPSAGQAYEDDVRMRVVADHV 295 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS+ LI DG+ P N+GRGYVLRR++RRA+ RLLG + M LL A M +YPE Sbjct: 296 RSALMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVQDAAMPTLLTASKDVMKLSYPE 355 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDG-------VLSHLGKDEILNGDVAFKLYD 392 L I E +E++ F +TL G +LD G ++ G VAF+L+D Sbjct: 356 LETGWAQISEVAYAEEDAFRRTLAAGTTILDTAVAAAKEKAKDSGTKPVVPGSVAFELHD 415 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK- 451 T G P+D+ ++ +G +D ++F + EQ+ RARA + +G + F EK Sbjct: 416 TSGFPIDLTLEMAAEQG-VEVDELAFRNLMAEQKERARADARAKKAGHADIRAFQEIEKA 474 Query: 452 -YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G + F+GY + ++V ++ G + + Sbjct: 475 MGGGSTFLGYTE-----------------------SSAEAVVTGLLVDGVPQPAVTAPAE 511 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 VEVV D+TPFYAE GGQL D G + DG +++ DVQ G+ VH + G + Sbjct: 512 VEVVLDRTPFYAEMGGQLADQGVIRLADGGVVEVVDVQAPIRGLSVHRGRLTEGTIALGE 571 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ID R ++ H+ATH+++ L ++ H Q GS +P LRFD H +++ Sbjct: 572 RAYAEIDSARRLAIARAHTATHMVYAGLRQVVNEHADQAGSENSPSRLRFDFRHGSALSA 631 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 ++ IE VND +AQ+L V T +M+ ++A +GA AL G KY VRVV++ Sbjct: 632 GQVGDIEALVNDKLAQDLTVRTDVMSLDEARQAGAIALFGEKYGTEVRVVTIGD----GF 687 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 LCGGTHV STG I + ++ ESSI +G+RRI+A+ G A + + + + + Sbjct: 688 DKELCGGTHVPSTGHIGRVAVLGESSIGSGVRRIDALVGDGAYDFQAKEHALVSQVTAIV 747 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEV 804 + R+ + ++ + A + S ++ S + V Sbjct: 748 GGRSDELPERIASLMTRLKEAEKKLAAAEQAAMVAKAAEVVDSAERVGGYLLASANLGSV 807 Query: 805 -DSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 + L+S++ +++++ G ++ + G+S E+ ++ A DL R++A Sbjct: 808 GSADALRSLVLDVRQRLGEGEPAVVAVGGVSGERPLVIVATNGAARDLGAKAGDLVRVAA 867 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 K LGGGG GG+P +AQ GG + D+A+ ++ L Sbjct: 868 KTLGGGG-GGKPDLAQGGGQDAAALDEALRALSHAL 902 >gi|306822871|ref|ZP_07456247.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679] gi|309801116|ref|ZP_07695245.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022] gi|304553503|gb|EFM41414.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679] gi|308222005|gb|EFO78288.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022] Length = 892 Score = 668 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 316/922 (34%), Positives = 484/922 (52%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++FQK+ H ++PS+SLI N PT +FT +GMVPF G++ P + Sbjct: 1 MRTSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPQY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+++++G Y + ++ RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T+P++ L P M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ E++ F +TL+ G + D ++ + +++GD AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V +EV+ D+TPFYAEA Sbjct: 471 ---------------------SARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E VND I Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVNDRI 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTH+ G Sbjct: 630 RDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV + Sbjct: 687 KIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERVNTL 746 Query: 764 WEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816 + ++ A +L +V L A V S + S L+ + + Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPALVADAKASQAPVKVASKNVGHFGSFDALRKTVLDV 806 Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G++++ K V + + A DL R ++K+LGGGG GG+P Sbjct: 807 RGQLGEDMPVVVALAGVNEDGKPMVAVATNDAARKQGIKAGDLVRGASKILGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVAS 894 AQ GG + K D A+ + Sbjct: 866 DFAQGGGSDATKIDAALEALVD 887 >gi|321477760|gb|EFX88718.1| hypothetical protein DAPPUDRAFT_191289 [Daphnia pulex] Length = 987 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 303/989 (30%), Positives = 454/989 (45%), Gaps = 120/989 (12%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + + IR +++FF +K H + SSS IP +DPTL+F N+GM FK +F G P Sbjct: 6 SAAKIRQMYMDFFIEKKSHIYVHSSSTIPKDDPTLLFANAGMNQFKPLFLGTVDPNSDMS 65 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT Sbjct: 66 KWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCTWAWELLTD 125 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 F L + RLY+T + DEE ++W + GL A++I+ + DNFW M + GP Sbjct: 126 VFQLPKDRLYVTYFGGNENAGLQPDEECRQIWLSL-GLPAERILPGSMKDNFWEMGDVGP 184 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI FD+ + + +EIWNLVFM F ++ LP+ ID GM Sbjct: 185 CGPCSEIHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFMTFNRETDSSLKPLPRKHIDCGM 243 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 G ER+ +V+Q+K +NYD D+F+ + +A ++ T + +RV+ DH Sbjct: 244 GFERLVSVIQDKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGAEDVNGVDMAYRVLADHA 303 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRR++RR + YA L L+P +C +G +P Sbjct: 304 RTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQVLGPTFP 363 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + L+ + + E+ +F KTL RG LL+ +S L L GDVA++LYDT+G P+ Sbjct: 364 EVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRLYDTYGFPV 423 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-------EK 451 D+ Q + +GL+ + + +A+ S G GSG + I F + + Sbjct: 424 DLTQLMSEEKGLSIDMVAYEEA-----KKQAQLLSQGKGSGVDDTIAFDVHAITELQNKG 478 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 T F + V + +S V AI Q EE SG + Sbjct: 479 VPPTD---------DSFKYNYKSVSDAVDSPYEFDVCTSKVIAIRFQKAFHEEVSSGVEC 529 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE+GGQ D G G + T + G +V H G LR Sbjct: 530 GILLDRTSFYAESGGQAYDEGFITKIGDEGTEFTVKNVQVRGGYVIHLGNVEGTLRVGDE 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L+ID RR + NH+ TH+L++AL ++G+ Q GS + PD +RFD T+ +T Sbjct: 590 VKLSIDQSRRRLIMSNHTGTHVLNYALRQVVGNEADQRGSLVAPDRMRFDFTNKAAMTVD 649 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE------- 682 ++K E N++I +N V + + G A+ Y D VRVVS+ Sbjct: 650 QVKQTERIANEMIRKNQEVYAKESSLVVAKAVQGLRAVFEETYPDPVRVVSIGIPVEQLE 709 Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G S CGGTHV +G I I +E +I GIRRI AITG A L Sbjct: 710 ADPANPAGNSTSIEFCGGTHVKRSGHIGDFVISAEEAIAKGIRRIVAITGPEASKALKKA 769 Query: 739 DEKLKSL--------------ASFLKVSQG-----NVVGRVEEI------WEEYRKLQLI 773 D K + L V + ++ V + ++ R + Sbjct: 770 DLLQKEVDAVSAKVDAFVSQNDKTLSVKELSRIIVDLSDDVSQANIAYWKKDDLRNILKG 829 Query: 774 HAKRK--------------LQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQK 818 KR + + L ++ F+ H + +SK L + ++ Sbjct: 830 LKKRADDVERAIKAAVVNDVAEAAKKLVAEQVN-TPFIVHEFNAFSNSKALDGALKQVKS 888 Query: 819 KIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH--- 873 + + E K VL + DR A + + +L Sbjct: 889 LSPETAAIFFSVDAEANKIVVLAAAPKGANDRGLKANEWVADVSALL---------DGKG 939 Query: 874 -----MAQSGGPNGNKADQAIAGVASFLK 897 AQ+ G N +A+ +F + Sbjct: 940 GGSAGSAQATGNNPAGLAEAMKKAKAFAQ 968 >gi|322694715|gb|EFY86537.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102] Length = 952 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 306/964 (31%), Positives = 464/964 (48%), Gaps = 96/964 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVYQ--AV 61 +R F ++ ++ GH ++PS S++P +DPTL+FTN+GM FK IF G Q P+ Sbjct: 11 VREAFFDYMRQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD Sbjct: 71 ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY T ++ D+EA +LW G+ D+I+ DNFW M + GPCGP S Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLD-IGMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWNLVFMQF++Q LP IDTGMG ERM Sbjct: 190 EIHYDKI-GGRNAAHIVNKDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGFERM 248 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 + LQE +NY D F L + E+VTG++ + +RVI DH+R+ SF Sbjct: 249 VSALQETDSNYATDCFTPLFKQIEEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRTLSF 308 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG +P ++GRGYV+RRI+RR + YAR E +LPAL + MG +PEL++ Sbjct: 309 AITDGAVPNSDGRGYVIRRILRRGVRYARKYLKAEIGSFFSKILPALVSHMGDQFPELVK 368 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400 +L I+E L E+E F +TLDRG + + K+ + L+GDV ++LYDT G P+D+ Sbjct: 369 KQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKNGVKKLDGDVVWRLYDTFGFPVDL 428 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RG + + R +AR S + + + + Sbjct: 429 TQIMAEERG-----LEIDEIEVSVAREKAREASKAVKASVDTFAKLDVHQI--------- 474 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQ 517 + + + + V+ I +E + ++ D+ Sbjct: 475 ------AQLDQQKVARTDDDAKFVKGDSKGKVQLIFDGKSFHNSTKELPKNTAIGILLDK 528 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE+GGQ+ DTG + D + + G +H +E G L + ++ D Sbjct: 529 TNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYGGFILHSGYIEYGALSSGDEVICEYDE 588 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+H+L +LG ++Q GS + + LRFD +H + EL+ IE Sbjct: 589 LRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELRKIET 648 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEY-----------ED 685 N+ I +N + ++ + G A+ G Y + VRVVS+ ++ Sbjct: 649 LSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDPKKQE 708 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------- 737 +S CGGTHV TG I L +V ES I GIRRI A TG A Sbjct: 709 WRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGDAAHQVQREAAEFSKKL 768 Query: 738 -----------QDEKLKSLASFLK------VSQGNVVGRVEEI----WEEYRKLQLIHAK 776 +D + K ++ L +++ + R ++I E +K Q A Sbjct: 769 DVLEAMPFGPAKDAQTKVISQELSQLVISTLAKDELNTRFQKIATSVVAEQKKRQKAEAG 828 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEKK 835 + V+ K AD F+ + ++K L V Q K + + + G +E Sbjct: 829 AAVGCVVKHFEEKKEADY-FVGRLPISANAKALTEVFKHFQAKDKTKSVYVFGGSQEEGA 887 Query: 836 ASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + V L A A + + V+GG GG P Q G K D A+ Sbjct: 888 VVHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEPTR-QGQGTKPEKIDDAVEAARK 946 Query: 895 FLKK 898 +L++ Sbjct: 947 WLEE 950 >gi|212716059|ref|ZP_03324187.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM 16992] gi|212661426|gb|EEB22001.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM 16992] Length = 892 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 313/920 (34%), Positives = 484/920 (52%), Gaps = 64/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++F+K+GH ++PS+SLI N PT +FT +GMVPF G++ P + Sbjct: 1 MRTSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+++++G Y + V R++ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T P+M LLP M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTGPVMPTLLPTSKAAMEPSYPELNNTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E E++ F +TL+ G + D ++ + + ++G+ AFKL+DT+G P++I ++ Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAVSGEDAFKLHDTYGFPIEITLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V +EV+ D+TPFYA+A Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAQA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H+ATH++H AL LG +Q GS P+ LRFD S + + S+E VN+ + Sbjct: 570 ARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARVNEKL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTH+ G Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ G+ A + + L+ + + RV + Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADRVNAL 746 Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816 + ++ A + +L +V L A V + + S L+ + + Sbjct: 747 LAKLKESDRRLAAMYESQLSASVPVLVAETKASQAPVKVAAKNVEHFGSFDALRKTVLDV 806 Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G+++E K V + E A DL R ++K+LGGGG GG+P Sbjct: 807 RGQLGEENPVVVALSGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKILGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGV 892 AQ GG + K D+A+ + Sbjct: 866 DFAQGGGVDATKIDEALEAL 885 >gi|301165787|emb|CBW25359.1| alanyl-tRNA synthetase [Bacteriovorax marinus SJ] Length = 878 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 312/918 (33%), Positives = 469/918 (51%), Gaps = 62/918 (6%) Query: 1 MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++ IR FL++F+K+ H + ++S++P NDPTL+F NSGM P K F G+E+P Sbjct: 1 MKKLNSREIREKFLDYFEKHNHLKIKAASVVPQNDPTLLFINSGMAPLKPYFLGKEEPPN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + + Q C+R D+D+VG H T FEM+G++S G Y+KE A LA+ LL E Sbjct: 61 KRLCNFQPCIRT----KDIDDVG-DRHHLTIFEMMGSWSIGDYYKELACSLAYGLLVDEL 115 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPC 169 D +RLY TVY D E+ + WKK G+ D I+ + DNFW ETGPC Sbjct: 116 GFDPKRLYFTVYGGNEALGIKPDHESVEAWKK-CGVPEDHIVMLGD-DNFWGPAGETGPC 173 Query: 170 GPCSEIFFDQGECIPGG--LPGSSEEGERYIEIWNL-VFMQFEQQNKQERFILPKMSIDT 226 GPC+E+FFD G ++ RYIEIWN VFM+ ++ LP S+DT Sbjct: 174 GPCTEVFFDCGPEYGPEYKPGKHFDDVSRYIEIWNAGVFMELNKKKDGSFTPLPLKSVDT 233 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 G GLER+A V+ + Y+ DL + L+ S ++ R++ DH+R++ F++ Sbjct: 234 GSGLERLAMVMNGHDSVYETDLMQPLMDISHKLLKSDGSEAFTKKARMLTDHIRAAVFIL 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ++G+ P+NEG+GY+ RR++R+ + ++ ++ + M YP++ AK + Sbjct: 294 SEGVTPSNEGQGYIPRRLIRKCVAALMAKKASKIDFSEMVDLIVEMMSDYYPQIKSAKEM 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDIL 405 I L +E F + GL L++ L+ G VAF L THGLPLD+++ L Sbjct: 354 ITYNLNNEINDFIPIVKTGLELIEKELAENKSSNKSFPGKVAFDLVTTHGLPLDVLKSDL 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 R +D +++ EE R +R S SG EK+ L K T F+GY+ Sbjct: 414 SDR-EIELDQAEYDKCYEEHRKASRVISRKGASGDQEKV-EELVAKLSTTDFVGYE---- 467 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T +S V +++ E V+ G+ +TPFY E+G Sbjct: 468 -------------------TEETTSKVNLLIKDSEKVDSVKEGESFLFTTVKTPFYGESG 508 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G A D +++I D K + I VH A V G ++ + L +D + R + Sbjct: 509 GQIGDCGWATTDSAKVEIVDTMKVGK-IHVHVANVISGEVKDGSEIQLKVDSEVRSDIKR 567 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH AL ++G H Q GS + D LRFD + +T EL IE N I + Sbjct: 568 NHSATHLLHAALHKVVGKHAVQKGSLVRSDRLRFDFQNQSAVTKEELDKIEALTNQWIME 627 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N T +++ + AI GA AL G KY+ +VRV+S G +S LCGGTHVS TG+I Sbjct: 628 NSGSETDLLDYDAAIEKGAIALFGEKYDSKVRVISF-----GENSVELCGGTHVSRTGDI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ I SESS+ GIRRIEA+TG+ A L ++ L+ + L V +++E+ + Sbjct: 683 GLMLITSESSVAKGIRRIEAVTGREAYKLLQERNNILRKTSELLSVKPSEFESKIQELKK 742 Query: 766 EYRKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + + K E+ + +++ +++ ++ LK + D L K + I Sbjct: 743 KSSAKKAAPKKVSATDTKFENENKIEVSGQKIFVAQLND-NADVLKDLGDQLLAKGEYKI 801 Query: 825 IMLVGISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I L G + K V +DL + A DL + K + GG GGG+PH AQ G P+ Sbjct: 802 ICLAG--NDGKTIRAFSWVGDDLNKKVKAGDLLKELLKPV-GGRGGGKPHFAQGGSPDVA 858 Query: 884 ---KADQAIAGVASFLKK 898 K I+ V SFLK+ Sbjct: 859 SMGKIFSNISNVESFLKE 876 >gi|70983336|ref|XP_747195.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293] gi|66844821|gb|EAL85157.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293] Length = 1011 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 295/981 (30%), Positives = 467/981 (47%), Gaps = 119/981 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 +R TFL++F++NGH +PSS ++P +DPTL+FTN+GM FK+IF G P Sbjct: 62 TAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAK 121 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK Sbjct: 122 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 181 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD +RLY+T ++ D EA LW+ +G+ D I+ DNFW M + GPC Sbjct: 182 YGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQGPC 240 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ +++ + LP +DTGMG Sbjct: 241 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMG 299 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L A + + G +RV+ DH+R Sbjct: 300 FERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVR 359 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG+ P ++GRGYV+RR++RR YAR E ++P L ++G +P Sbjct: 360 TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFP 419 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + E L E+ F KTLDRG + + + D+ L+G ++LYDT G Sbjct: 420 ELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGF 479 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D+ R RA+ S G T + + + Sbjct: 480 PVDLTRLMAEERGLNIDDLEFEEA-----RLRAKEASKGQKKSATGTVKLDVHDLG---- 530 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K K + +++ +KAI + G+++ + Sbjct: 531 ----------KLEKMNVVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGI 580 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG I DG + G +H ++ G +++ Sbjct: 581 ILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYAGYVLHTGFMKYGSFSIGDAVLC 640 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T EL+ Sbjct: 641 EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 700 Query: 634 SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681 IE+ + I QN V + SG A+ G Y D VR + +V Sbjct: 701 KIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 760 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 E S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 761 EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVAKEF 820 Query: 737 --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772 ++++ K + L + V + +++ + + Q Sbjct: 821 EKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKAQQK 880 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830 + K+ L+ + + + + K + ++ ++ K+Q + +L Sbjct: 881 LETKKALEAIISYFESPTNEGKTCLVTRLPISANPKAVSESLNYVKSKLQDKTVYVLAAD 940 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV------------LGGGGGGGRPHMAQS 877 ++ + + V++ LLD +A DLA + + V +G Sbjct: 941 LEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGN------------ 988 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + +K + AIA + +L K Sbjct: 989 -GVHPDKTEDAIALASDYLAK 1008 >gi|159123802|gb|EDP48921.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163] Length = 1011 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 295/981 (30%), Positives = 467/981 (47%), Gaps = 119/981 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 +R TFL++F++NGH +PSS ++P +DPTL+FTN+GM FK+IF G P Sbjct: 62 TAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAK 121 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK Sbjct: 122 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 181 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD +RLY+T ++ D EA LW+ +G+ D I+ DNFW M + GPC Sbjct: 182 YGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQGPC 240 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ +++ + LP +DTGMG Sbjct: 241 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMG 299 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L A + + G +RV+ DH+R Sbjct: 300 FERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVR 359 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG+ P ++GRGYV+RR++RR YAR E ++P L ++G +P Sbjct: 360 TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFP 419 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + E L E+ F KTLDRG + + + D+ L+G ++LYDT G Sbjct: 420 ELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGF 479 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D+ R RA+ S G T + + + Sbjct: 480 PVDLTRLMAEERGLNIDDLEFEEA-----RLRAKEASKGQKKSATGTVKLDVHDLG---- 530 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K K + +++ +KAI + G+++ + Sbjct: 531 ----------KLEKMNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGI 580 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG I DG + G +H ++ G +++ Sbjct: 581 ILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYAGYVLHTGFMKYGSFSIGDAVLC 640 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T EL+ Sbjct: 641 EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 700 Query: 634 SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681 IE+ + I QN V + SG A+ G Y D VR + +V Sbjct: 701 KIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 760 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 E S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 761 EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVAKEF 820 Query: 737 --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772 ++++ K + L + V + +++ + + Q Sbjct: 821 EKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKAQQK 880 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830 + K+ L+ + + + + K + ++ ++ K+Q + +L Sbjct: 881 LETKKALEAIISYFESPTNEGKTCLVTRLPISANPKAVSESLNYVKSKLQDKTVYVLAAD 940 Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV------------LGGGGGGGRPHMAQS 877 ++ + + V++ LLD +A DLA + + V +G Sbjct: 941 LEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGN------------ 988 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + +K + AIA + +L K Sbjct: 989 -GVHPDKTEDAIALASDYLAK 1008 >gi|171743066|ref|ZP_02918873.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC 27678] gi|283455924|ref|YP_003360488.1| alanyl-tRNA synthetase [Bifidobacterium dentium Bd1] gi|171278680|gb|EDT46341.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC 27678] gi|283102558|gb|ADB09664.1| Alanyl-tRNA synthetase [Bifidobacterium dentium Bd1] Length = 892 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 315/922 (34%), Positives = 484/922 (52%), Gaps = 64/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++FQK+ H ++PS+SLI N PT +FT +GMVPF G++ P + Sbjct: 1 MRTSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPQY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+++++G Y + ++ RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T+P++ L P M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ E++ F +TL+ G + D ++ + +++GD AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D + F + + EQ+ RARA +L ++ K+ F+GY + Sbjct: 414 EQGVK-VDEVKFRELMAEQKGRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V +EV+ D+TPFYAEA Sbjct: 471 ---------------------SARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E VND I Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVNDRI 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTH+ G Sbjct: 630 RDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV + Sbjct: 687 KIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERVNTL 746 Query: 764 WEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816 + ++ A +L +V L A V S + S L+ + + Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPALVADAKASQAPVKVASKNVGHFGSFDALRKTVLDV 806 Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G++++ K V + + A DL R ++K+LGGGG GG+P Sbjct: 807 RGQLGEDMPVVVALAGVNEDGKPMVAVATNDAARKQGIKAGDLVRGASKILGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGVAS 894 AQ GG + K D A+ + Sbjct: 866 DFAQGGGSDATKIDAALEALVD 887 >gi|301102849|ref|XP_002900511.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora infestans T30-4] gi|262101774|gb|EEY59826.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora infestans T30-4] Length = 980 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 290/973 (29%), Positives = 461/973 (47%), Gaps = 99/973 (10%) Query: 4 VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59 + IR TF E+FQ H S ++P +DPTL+F N+GM +K IF GQ P + Sbjct: 28 AARIRKTFFEYFQNQKELPHTFYKSCPVVPLDDPTLLFINAGMNQYKPIFLGQVDPSHPM 87 Query: 60 ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ A+ L++ LLT Sbjct: 88 AKLVRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGNYFKKEAVHLSFTLLT 147 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + F +D+ RLY T + DEE ++W L ++++ DNFW M + G Sbjct: 148 EVFGIDKDRLYATYFGGDEKQGLPSDEETREIWLNY--LPTERVLPFGCKDNFWEMGDVG 205 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPC+EI +D+ + + IEIWN VF+QF ++ + LP +DTG Sbjct: 206 PCGPCTEIHYDRIGNRDASE-LVNADRPDVIEIWNNVFIQFNREQDGKLVPLPHKHVDTG 264 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278 MG ER+A++LQ K +NYD D+F L A ++ T + + +RV+ DH Sbjct: 265 MGFERLASILQGKDSNYDTDVFTPLFAAIQKSTKAAPYTGKLGEEDPDKKDMAYRVVADH 324 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 +R+ +F I DG +P+N+GRGYVLRRI+RRA+ Y + L + L+P + +G A+ Sbjct: 325 VRTLTFAITDGAVPSNDGRGYVLRRILRRAVRYGQQFLNAPSGFLTELVPVVVNMLGEAF 384 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHG 395 PEL+Q + +EE + E++ FG+TL++G+ + + + ++ G+ AF LYD+ G Sbjct: 385 PELVQKQKEVEEIILDEEKSFGRTLNKGIERFKKIAQGIREANKLVVPGEDAFFLYDSMG 444 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + G+ +DI + + + Q R++ GS + +E Sbjct: 445 FPIDLTEIMAEEEGMT-VDIKGYEECMRLQSERSKMDRKKGGSNGARPLVLEARE----- 498 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVEEAVSGQ-- 509 S + + S+ V AI E V+E +G Sbjct: 499 ---------TSTLAGKHISATDDMAKYEWNVKTSAKVVAIFTTTESSSDFVDEVKAGDFE 549 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 +V V+ D+T FY++AGGQ+ DTG ++L + V+ A + + G ++ Sbjct: 550 RVGVILDKTSFYSQAGGQIYDTGVLTASNLKLDVDSVESYAGYVMHM-GSIATGSIKVGD 608 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 S+ +DY R +++ NH+ TH L+ AL +LG+ V Q GS + LRFD T++K + Sbjct: 609 SVACEVDYARRAKIAPNHTMTHALNFALRKVLGTVVDQRGSLVDESRLRFDFTNNKALKP 668 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE---- 684 A+L +E +D+I Q L V T+ + +A G A+ G Y D VRVVS+ Sbjct: 669 AQLAEVEAICDDLIKQQLEVYTQNSAQAEAKRIQGLRAVFGETYPDFVRVVSIGQPIAPM 728 Query: 685 -------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 S CGGTH+ +T E + E +I GIRR+ A T A Sbjct: 729 LEDPEKSKWSNFSVEFCGGTHLKNTKEAKRFVLYEEGAIAKGIRRVSAYTCDLAVEAEER 788 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEE-------------IWEEYRKLQLIHAKRKL----- 779 + L + K+ V V + ++ RK R Sbjct: 789 GAKLQVELDAIDKLDGNEFVESVSAFKPVLDQALISLPLKDKLRKQVDSLVNRVKKIKKE 848 Query: 780 -----------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 E + + + DSK + +++A+ I +G M+ Sbjct: 849 AAAARAANGVRDATAEATKAKEAGQEIVVVKLDVGTDSKLGREMLEAMSTIIPTGSFMIF 908 Query: 829 GISKE-KKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM-AQSGGPNGNK 884 + K + V++ + + +A A V+ G GGG+ + A + +K Sbjct: 909 STDSDANKTAAFTQVSQHHIDSKQLDARKWVNH-AMVVMKGKGGGKDALNATGQAKSVDK 967 Query: 885 ADQAIAGVASFLK 897 D+A+A SF++ Sbjct: 968 VDEAVALAKSFVQ 980 >gi|115490933|ref|XP_001210094.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624] gi|114196954|gb|EAU38654.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624] Length = 968 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 301/976 (30%), Positives = 465/976 (47%), Gaps = 102/976 (10%) Query: 3 NVSSIRTTFLEFFQKNGHE---------LLPS---SSLIPCNDPTLMFTNSGMVPFKNIF 50 +R TFL++F+KNGH +LPS S ++P DPTL+FTN+GM FK+IF Sbjct: 12 TAKRVRDTFLDYFKKNGHTFGIATVARSILPSFASSPVVPLADPTLLFTNAGMNQFKSIF 71 Query: 51 TGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110 G P T C+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ + Sbjct: 72 LGTVDPNSDFATLKSACIRAGGKHNDLDDVGKDGYHHTFFEMLGNWSFGDYFKKEAIRYS 131 Query: 111 WDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWS 162 W+LLT + LD +RLY+T ++ D EA +LW K G+ D I+ DNFW Sbjct: 132 WELLTTVYGLDPQRLYVTYFEGHKEGGLEPDLEAKELW-KAVGVPDDHILPGNMKDNFWE 190 Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222 M + GPCGPCSE+ +D+ + + +EIWN VF+Q+ ++ + LP Sbjct: 191 MGDQGPCGPCSEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNREADRSLRPLPNK 249 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHR 273 IDTG+G ER+ ++LQ+K++NYD D+F L A + G +R Sbjct: 250 HIDTGLGFERLVSILQDKSSNYDTDVFTPLFDAIRDITGAREYQGRFGADDVDGIDTAYR 309 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCT 331 V+ DH+R+ F I+DG++P N+GRGYV+RR++RR YAR E L+P + Sbjct: 310 VVADHIRTLMFAISDGVMPNNDGRGYVIRRVLRRGARYARKYFQVEIGSFFSKLVPTVVD 369 Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFK 389 ++G +PEL + + + E L E+ F KTLDRG + S D+ L+G ++ Sbjct: 370 QLGDMFPELKKKQHDVMEILDEEEISFSKTLDRGERQFEQYAQKSKTKGDDKLHGADVWR 429 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 LYDT G P+D+ + + RGL D+ R RA+ S G + + + Sbjct: 430 LYDTFGFPVDLTRLMAEERGLRIDDLEFEEA-----RLRAKEASKGQKKAAADAVKLDVH 484 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAV 506 + K K + +++ VKAI E Sbjct: 485 DLG--------------KLEKMEDVHKTDDSAKFGRENITAQVKAIYHGKSFCTSTSEIT 530 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +G+++ ++ D+T FYAE GGQ DTG + DG + G +H ++ G Sbjct: 531 AGEQLGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYGGYVLHTGFMKYGSFS 590 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 S++ D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H P Sbjct: 591 VGDSVICEYDELRRWPIRNNHTGTHILNFALREVLGDGIEQKGSLVAAEKLRFDFSHKSP 650 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--- 682 +T AEL+ +ED + I QN V ++ + A SG A+ G Y D VRVVSV Sbjct: 651 LTDAELQKVEDISTEYIRQNCAVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVEL 710 Query: 683 --------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 S CGGTHV TG+I L ++ ES I GIRRI A+TG+ A Sbjct: 711 EEILKNVSDPRWEKVSIEFCGGTHVQKTGDIKDLVVLEESGIAKGIRRIIAVTGEEAHEV 770 Query: 735 LM-------------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRK 769 ++++ K + L V + R I ++ Sbjct: 771 QRLAADFEKRLASLETMPLGSEKEQEAKQIQVELNSLIVSAVQKSKFRERFARINKQIVD 830 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGI 824 Q K + + ++ ++ + N ++ + +SK + ++ ++ K+Q Sbjct: 831 AQKAQQKLESKKALDTINSYFADASNEGKSWLVAKLPISANSKAISEAINHVKSKMQDKS 890 Query: 825 I-MLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + +L + + + V++ + +A + A + + +GG GG P G N Sbjct: 891 VYVLAADAAAGRVAHGCYVSKAATEQGASASEWATVVSGAIGGKAGGKGPTS-IGNGVNP 949 Query: 883 NKADQAIAGVASFLKK 898 +K D+A+ +L K Sbjct: 950 DKVDEAVELATDYLSK 965 >gi|45188236|ref|NP_984459.1| ADR363Cp [Ashbya gossypii ATCC 10895] gi|44983080|gb|AAS52283.1| ADR363Cp [Ashbya gossypii ATCC 10895] Length = 956 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 299/965 (30%), Positives = 467/965 (48%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 ++R+TF+++F+ H+L+PSS +IP +DPTL+F N+GM FK IF G P Sbjct: 10 TAQNVRSTFIDYFKAKDHKLVPSSPVIPYDDPTLLFANAGMNQFKPIFLGMVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG + HHTFFEMLGN+SFG YFK+ AI +W+LLTK Sbjct: 70 LKRAVNTQKCIRAGGKHNDLEDVGLDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTKV 129 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T ++ DEEA LW G++ D +I DNFW M + GPC Sbjct: 130 YGLPEDRLYVTYFEGDESLGLAADEEARDLWLS-VGVAPDHVIAANVKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ FD+ +++ IEIWN VF+QF +++ LP +DTGMG Sbjct: 189 GPCSEVHFDRI-GGRNAAALVNQDDPNVIEIWNNVFIQFNREHDGSLRPLPAKHVDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F+ L +++TG++ +RV+ DH+R Sbjct: 248 FERLVSVLQDVPSNYDTDVFQPLFARIQEITGVRPYSGKFGADDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + + +ADG +P N+GRGYVLRRI+RR Y R L P L + YP Sbjct: 308 TLTIALADGGVPDNDGRGYVLRRILRRGARYVRKYMNYPTGKFFSQLAPTLIEQFKDVYP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + + L E+ F KTLDRG L + + +IL+G ++LYDT+G Sbjct: 368 ELTKNQSYLFDILDEEEASFAKTLDRGEKLFEKYAETAKNSGSKILDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + GL +D F QA +E ++ + + + + Sbjct: 428 PVDLTQLMADEHGLK-VDNEGFEQAKQESYEASKKNGSKGDANLIKLNVHEV-------- 478 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + ++ T + + + I VE+ G++ ++ Sbjct: 479 ----------SQLSDEGVPRTDDSAKYGTQDIEATILRIHDGENFVEQMTEVGKQYGILL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ D G + D D ++ G H + G L ++ + Sbjct: 529 DRTCFYAEQGGQEYDKGKLVIDDAAEFNVDNVQQYSGYVFHTGNLADGKLCVGDKIIASY 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ THLL+HAL TILG ++ Q GS +TP+ LRFD +H KP++ EL+ + Sbjct: 589 DELRRYPIRNNHTGTHLLNHALRTILGDNIDQRGSLVTPEKLRFDFSHKKPMSYEELEQV 648 Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E N I +N V + I A+ G Y D VRVVSV Sbjct: 649 ETICNQQIRENRSVYYKDIPLDVAKSIHSIRAVFGETYPDPVRVVSVGKSVDEILESPSN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736 E+ +S LCGGTHVS TG+I I+ ES I GIRRI A++ A Sbjct: 709 EEWAKYSIELCGGTHVSKTGDIKEFVIIEESGIAKGIRRIVAVSASEAYEVQRVAREFAL 768 Query: 737 ------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 +++K++ + L +++ + + ++ + + AK++ Sbjct: 769 ELDAIDKLPFSMIKEKKIREIGVRLDQLNISVITKNELKTKFTKMEKAVKDEVKTKAKKE 828 Query: 779 LQLNVEDLSCHKIA--DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834 ++ ++ + + A D F + + K + + L+ + I L G E Sbjct: 829 MKQTLDAVKEYFAANEDATFFVKSLDISANPKAVTEAVQYLKNSARDKTIYLFTGNDPEG 888 Query: 835 KASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K + +++D L + LA++ + +GG GG+ ++ Q G D AIA V Sbjct: 889 KVAHGCFISDDALAKGIDGPALAKVVSSKIGGKA-GGKGNVFQGMGDKPAGIDSAIAEVE 947 Query: 894 SFLKK 898 + K+ Sbjct: 948 ASFKE 952 >gi|320588479|gb|EFX00948.1| alanyl-tRNA synthetase [Grosmannia clavigera kw1407] Length = 1117 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 300/965 (31%), Positives = 459/965 (47%), Gaps = 93/965 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE---KP--VYQA 60 +R TFLE+F+K GH ++PSSS++P NDPTL+FTN+GM FK IF G P + Sbjct: 167 KVRQTFLEYFEKKGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVAKADPLSSLKR 226 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+++WDLLT + L Sbjct: 227 AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMSWDLLTNVYGL 286 Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D RLY+T ++ D EA LW G+ D I+ DNFW M + GPCGPC Sbjct: 287 DPARLYVTYFEGNPAMGLEPDLEAKNLWLS-VGVPEDHILPGNMKDNFWEMGDQGPCGPC 345 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SE+ +D+ +++ +E+WN VF+QF++Q + LP +DTGMG ER Sbjct: 346 SEVHYDKVGGGRNASSLVNQDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMGFER 405 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283 + + LQ+K +NY D+F L ++V G +RV+ DH+R + Sbjct: 406 LVSALQDKISNYATDIFTPLFDRIQEVTGARPYTDKYGKDDVDGIDTAYRVVADHIRLLT 465 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341 F +ADG +P N+GRGYV+RR++RR + YAR E +LPAL +MG +PE+ Sbjct: 466 FSMADGAVPNNDGRGYVVRRVLRRGVRYARKYFGAEIGSFFSQILPALVDQMGHQFPEIA 525 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399 + + I+E L E+E F +TLDRG + + K + L+G ++LYDT G P D Sbjct: 526 KKQKDIKEILDEEEEAFSRTLDRGERQFEKYAAATAKSGAKTLSGADVWRLYDTFGFPED 585 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + Q + RGL+ R RAR S + F Sbjct: 586 LTQLMAEERGLSIDAEEV-----AVARERAREASKSVKEAVQ--------------TFAK 626 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516 ++ + ++ E + V L + S V+ I V+ + + ++ D Sbjct: 627 LNVHQIAELENEHKIVRPSSEAKYLRGDLHSRVELIYTGTGFVKTTKDIPANTPLGILVD 686 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +T FYAE+GGQ+ DTG + D + ++ G VH+ +E G L + +++ + Sbjct: 687 KTNFYAESGGQVADTGRIVIDDVAEFKVLDVQEYGGYVVHNGYLEYGELSSGDNVICEYE 746 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + NH+ TH+L+HAL +LG V+Q GS + D LRFD +H ++ AE+K IE Sbjct: 747 ELRRAPIRNNHTGTHVLNHALREVLGDDVNQKGSLVDQDKLRFDFSHKSAVSLAEIKKIE 806 Query: 637 DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVR-----------VVSVEYE 684 + N I +NL V + + G A+ G Y D VR + + + Sbjct: 807 ELANANIQRNLKVFYKDVDLASAREIEGVRAVFGETYPDPVRVVSVGVDVDELLRTPKKA 866 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 + +S CGGTHV TG I + +V ES I GIRRI A TG A + + Sbjct: 867 EWRGYSVEFCGGTHVEQTGLIKDVVVVEESGIAKGIRRIVAYTGDAAHRVQREATQFQER 926 Query: 745 LASFLKVS-------------------------QGNVVGRVEEIW----EEYRKLQLIHA 775 + + K+ + + R ++ +E +K Q Sbjct: 927 IEAIEKLPFGPEKETEIKAAQHDLNQLAISALAKEELRTRFAKVQKDVLDELKKRQKAEL 986 Query: 776 KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833 K + + + + F+ H+ ++K + VM+ + K + + + G E Sbjct: 987 KAAVGAVTDHFAKPDNKESKVFVGHLPISANAKAISEVMNHFKTKDKERSVYVFGGSPSE 1046 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 + V T A + + V+GG GG P Q G K + + Sbjct: 1047 GVVHGVYVGTHLASKGVTAEQWSTAVSDVVGGKAGGKEPTR-QGSGTKPEKLEDGVKRAE 1105 Query: 894 SFLKK 898 +L + Sbjct: 1106 EWLAE 1110 >gi|119025718|ref|YP_909563.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703] gi|154487461|ref|ZP_02028868.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis L2-32] gi|205829991|sp|A1A198|SYA_BIFAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118765302|dbj|BAF39481.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703] gi|154083979|gb|EDN83024.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis L2-32] Length = 892 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 313/920 (34%), Positives = 486/920 (52%), Gaps = 64/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I FL++F+++ H ++PS+SLI N PT +FT +GMVPF G++ P + Sbjct: 1 MRTSEIAKRFLDYFEQHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKHRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPKY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+++++G Y + V R++ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG TEP+M LLP M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTEPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E E++ F +TL+ G + D ++ + ++++G+ AFKL+DT+G P++I ++ Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDMAVTKAKQGGSDLVSGEDAFKLHDTYGFPIEITLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY + Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLLQPIDFLGYTDM-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V +EV+ D+TPFYA+A Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAQA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID + R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLERRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VN+ + Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNAVEARVNEKL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTH+ G Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHIDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+SI +G+RR++A+ GQ A + + L+ + + RV + Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDMVNARPDELAERVNML 746 Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816 + ++ A + +L +V L A V + S L+ + + Sbjct: 747 LAKLKESDRRLAAMYESQLAASVPTLVAEAKASSAPVKVAKKNVGHFGSFDALRKTVLDV 806 Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872 + ++ ++ L G++++ K V + E A DL R ++KVLGGGG GG+P Sbjct: 807 RGQLGEDAPVVVALAGMNEDGKPMVAVATNEAARKQGIKAGDLVRGASKVLGGGG-GGKP 865 Query: 873 HMAQSGGPNGNKADQAIAGV 892 AQ GG + K D+A+ + Sbjct: 866 DFAQGGGADATKIDEALEAL 885 >gi|183601533|ref|ZP_02962903.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis HN019] gi|241190968|ref|YP_002968362.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196374|ref|YP_002969929.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219139|gb|EDT89780.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis HN019] gi|240249360|gb|ACS46300.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250928|gb|ACS47867.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178710|gb|ADC85956.1| Alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793957|gb|ADG33492.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9] Length = 899 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 317/929 (34%), Positives = 476/929 (51%), Gaps = 71/929 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L +F+K H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTAEIAQRYLNYFKKQDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D++ VG+T RH TFF+MLGNFSFG YFKE AI A+DLLT Sbjct: 60 ASNQKCVRTL----DIEEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTSPREDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +L++T Y +D+EA +W+ G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GFGFDPEKLWMTTYTDDDEARAMWRNE-GVDPEHIQILGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF + N + + L +IDTG GL Sbjct: 175 VDRGPEY-GKEGGPIADESRYIEIWDLVFENYMVDNVKSKTDLHIAGELKHKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+E++TG+KY N V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKNNIYETDEVYPVIEAAEKITGIKYGENKEADVRMRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LG T+P+M LLP M YPEL + Sbjct: 294 GVRPSNAGRGYVLRRLIRRTIEAMRVLGVTDPVMPQLLPVSEQAMEPNYPELANTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---------GKDEILNGDVAFKLYDTHGLPLD 399 E E++ F +TL GL + D ++ +++GD AF L+DT+G P++ Sbjct: 354 EAAYGEEDAFRRTLTNGLEIFDMAVAKAKSTAEEAKGETTPVVSGDAAFTLHDTYGFPIE 413 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFI 458 + ++ +G+ +D F + + EQ+SRAR +L + K K +F+ Sbjct: 414 LTLEMAQEQGVK-VDEAKFRELMNEQKSRARQDALKKRHNVDLSEYDDFKNKLHQPIEFL 472 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQ 517 GY + S V I+ +G V + VEV+ D+ Sbjct: 473 GYTEVSTR-----------------------SRVLGIMLEGVGSVPAVSAPATVEVILDR 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TPFYAEAGGQL D G I D L++ DVQK + + V + G L TID Sbjct: 510 TPFYAEAGGQLADQGEIISDDGAVLEVDDVQKPIKDLIVQQCRLIEGTLVVGAEATATID 569 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ +H+ATH++H AL LG +Q GS P+ LRFD S T + ++E Sbjct: 570 VERRGAIARSHTATHIVHKALREELGPQATQRGSEDAPNRLRFDFQWSTAPTKELMSAVE 629 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VND + NL V T M +DAIA GA L G KY D VRVV++ S LCGG Sbjct: 630 ARVNDRLRDNLHVSTEEMKFDDAIALGAMHLFGEKYGDVVRVVTIG---DDGWSRELCGG 686 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV G+I + I+SE+S+ +G+RR++A+ GQ A + + L+ L + Sbjct: 687 THVDFAGKIGQVNILSEASVGSGVRRVDALVGQSAYDFNAREHALVSQLSDTLNARPDEL 746 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDS-KEL 809 R+ + + + A + + + A V +S + S L Sbjct: 747 ADRINTLLAKLKDSDRRLASMYEAQLASSVPELVEAAANSTAPVVVVSKNVGHFGSFDVL 806 Query: 810 KSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGG 865 + + ++ ++ I+ L G++++ K + + E A DL R ++K+LGG Sbjct: 807 RKTVMDIRGRLGDDKPVIVALAGVNEDDKPVIAVATNEAARKAGVKAGDLVRGASKMLGG 866 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 GG GG+P AQ GG + +K D A+ + Sbjct: 867 GG-GGKPDFAQGGGADASKIDAALEALTQ 894 >gi|134083795|emb|CAK47129.1| unnamed protein product [Aspergillus niger] Length = 961 Score = 664 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 287/912 (31%), Positives = 439/912 (48%), Gaps = 93/912 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 +R TFL++F++NGH + SS ++P +DPTL+FTN+GM FK+IF G P Sbjct: 12 TSKRVRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAN 71 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK Sbjct: 72 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKI 131 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RRLY+T ++ D EA LW K G+ D I+ DNFW M + GPC Sbjct: 132 YGLDPRRLYVTYFEGNKEGGLEPDLEAKDLW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 190 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 191 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMG 249 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ K++NYD D+F + Q V G +RVI DH+R Sbjct: 250 FERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVR 309 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + F I+DG +P N+GRGYV+RR++RR YAR E ++P + ++G +P Sbjct: 310 TLMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFP 369 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 EL + + + E L E+ F KTLDRG + + + L+G ++LYDT G Sbjct: 370 ELRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADVWRLYDTFGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL D RSRA+ S G + E + + + Sbjct: 430 PVDLTRIMAEERGLQIDDREFEEA-----RSRAKEASRGQKKTSAETVKLDVHDLG---- 480 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 K + +++ VKAI +E G+++ + Sbjct: 481 ----------KLEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDGEQLGI 530 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG + DG + G +H ++ G +++ Sbjct: 531 ILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYAGYVLHTGFMKYGSFSVGDTVIC 590 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL T+LG V Q GS + + LRFD +H I+ +L Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAISDKDLA 650 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682 IE+ + I QN V ++ + A SG A+ G Y D VRVVSV Sbjct: 651 RIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELGEILQNV 710 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736 S CGGTHV TG+I L ++ E I GIRRI A+TG+ A Sbjct: 711 KDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDAHEVQRLAAEF 770 Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEE----YRKLQL 772 ++++ K + + L V + R I +E + LQ Sbjct: 771 QKRLDLLEAMPLTPEKEKEAKQIQAELNQLSISAVQKSAFRERFARINKEVIDGQKALQK 830 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830 + +K L+ + D +++ + +SK + ++ ++ K+ + +L Sbjct: 831 LESKVALETITNYFQAPENQDRSWLVAKLPISANSKAISESLNYVKSKLPDKSVYVLAAS 890 Query: 831 SKEKKASVLIVV 842 + + + + V Sbjct: 891 TDQGRVAHGCYV 902 >gi|310789965|gb|EFQ25498.1| tRNA synthetase class II [Glomerella graminicola M1.001] Length = 955 Score = 664 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 305/963 (31%), Positives = 471/963 (48%), Gaps = 93/963 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQ--AV 61 +R TFLEFF+K GH ++PSSS++P NDPTL+FTN+GM FK IF G P+Y Sbjct: 11 VRKTFLEFFEKRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTISKADPMYPLKRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD Sbjct: 71 TDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEWSWELLTKVYGLD 130 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA LW+ G+ D I+ DNFW M + GPCGPCS Sbjct: 131 PDRLYVTYFEGNPDMGLEPDLEAKGLWQS-VGVPEDHILPGNMKDNFWEMGDQGPCGPCS 189 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E+ +D+ +++ +EIWN VF+Q+++Q + LP +DTGMG ER+ Sbjct: 190 EVHYDKI-GGRNASDLVNQDDPMVVEIWNNVFIQYDRQPDRSLKSLPAKHVDTGMGFERL 248 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 + LQ +NY D+F L + E+VTG + + +RVI DH+R +F Sbjct: 249 VSALQNTVSNYATDIFTPLFKRIEEVTGARPYTDKYGADDVDGIDTAYRVIADHIRLLTF 308 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 ++DG +P N+GRGYV+RR++RR + YAR E +LPAL +MG +PE+++ Sbjct: 309 SMSDGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGSFFSKILPALVDQMGEQFPEIVK 368 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400 + I E L E+E F +TLDRG + + ++ L+G ++LYDT G P+D+ Sbjct: 369 KQDDIREILDEEEEAFARTLDRGEAQFEKYANAAIKKGEKKLSGAEVWRLYDTFGFPVDL 428 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D A ++ R ++ K F Sbjct: 429 TKLMAEERKLEIDD-DEVKAAQDKAREASKVV------------------KNSVQTFAKL 469 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++ + ++ ++ + + V+ I V+ + ++ D+ Sbjct: 470 NVHQIAELEQQLNVARTDDDAKFVKGDSKAKVQLIYDGKGFVKSTKDIAENTPLGLLLDK 529 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE+GGQ+ DTG + D + + G VH+ +E G+L + ++ D Sbjct: 530 TNFYAESGGQVADTGRIVIDDVAEFKVLDVQNHGGYIVHNGYLEYGVLSSGNEVICEYDE 589 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ATH+L+H+L +LG V+Q GS + + LRFD +H +T ELK IED Sbjct: 590 LRRSPIRNNHTATHILNHSLREVLGDDVNQKGSLVDNEKLRFDFSHKTGVTIPELKKIED 649 Query: 638 NVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVR-----------VVSVEYED 685 N I QN + + ++ G A+ G Y + VR + + + + Sbjct: 650 FSNSYIRQNGKIYAKEVDLDLAKGIEGVRAVFGETYPNPVRVVSVGVDVDTLLANPKNPE 709 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-------------R 732 S CGGTHV TG I L IV ES I GIRRI A TG A Sbjct: 710 WRKISVEFCGGTHVDQTGLIKDLVIVEESGIAKGIRRIIAYTGDAAHQVQREADEFSKRL 769 Query: 733 SHLM------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 L +++++K+ L +++ ++ R ++I + Q K + + Sbjct: 770 DALEVLPFGPEKEQEIKTTQHALNQLTISTLTKEDIKKRFDKIIKAVTDEQKKRQKAEAK 829 Query: 781 LNVEDLSCH--KIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEKKA 836 ++ + H K D F+ + ++K + V+ Q K + + L G E Sbjct: 830 TALDTVVAHFDKNKDSKWFVGQLPISANAKAIGEVVKHFQSKDKERSVYLFGGSKNEGSV 889 Query: 837 SVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 + + V L A A ++++GG GG P Q G D+A+A + Sbjct: 890 AHGVYVGTHLSSQGVTAEQWAAQVSEIVGGKSGGKEPTR-QGQGTKAENLDEAVATAEKW 948 Query: 896 LKK 898 LK+ Sbjct: 949 LKE 951 >gi|312215385|emb|CBX95337.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans] Length = 968 Score = 664 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 306/991 (30%), Positives = 459/991 (46%), Gaps = 139/991 (14%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F++ GH +PSSS++P +DPTL+FTN+GM +K IF G P + Sbjct: 15 VRQTFLDYFKERGHSFVPSSSVVPLSDPTLLFTNAGMNQYKAIFQGTIDPSSDFAQLKRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+LLTK + +D Sbjct: 75 TNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTKVYGID 134 Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 +RLY+T ++ D +A +LWK G+ D I+ DNFW M + GPCGPCSE+ Sbjct: 135 TKRLYVTYFEGNEDLEPDLKAKELWKS-VGVPEDHILPGDMKDNFWEMGDQGPCGPCSEV 193 Query: 176 FFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D E G + + IEIWN VFMQ+ ++ + LP IDTG+G E Sbjct: 194 HYDLREPEGGNYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGLGYE 253 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSS 282 R+ +VLQ +NYD D+F L + ++V G +RV+ DH R Sbjct: 254 RLVSVLQHTKSNYDTDVFTPLFKRIQEVTGAREYRGGFGADDPDGIDTAYRVVADHTRMM 313 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPEL 340 SF IADG +P N GRGYV+RR++RR YAR E ++P L +MG +PE+ Sbjct: 314 SFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFEVEIGDFFSKIIPTLVDQMGDMFPEI 373 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + I E L E++ F K+LDRG V+ + + L GD ++LYDT+G P+ Sbjct: 374 RKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKAKGSNDLPGDDVWRLYDTYGFPV 433 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + + RGL D + +AR S G + F + + Sbjct: 434 DLTKLMAEERGLNINDKEVEKA-----QEKAREASKGDKKAGAAVVKFDVHDLG------ 482 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEVVF 515 D P +++ +KAI + +E G++ V+ Sbjct: 483 --------ALDAMDDVPKTDDSPKYGRENITATIKAIYHNKQFLKSTKEVPEGEQFGVLL 534 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + DG + + G +H ++ G L+ ++ Sbjct: 535 DKTNFYAEQGGQEYDTGRLLVDGEAEISIENVQVYAGYVLHTGYLKYGELKVGSEVIAEF 594 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L++AL +LG+ V Q GS + P+ LRFD +H ++ AE++ + Sbjct: 595 DELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAEIEKV 654 Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E I + V + + + +G A+ G Y D VRVVSV Sbjct: 655 ESISTTYIKADAKVYAKDVPLSKAKEITGVRAVFGETYPDPVRVVSVGQPVEDLLADPKN 714 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736 G S CGGTHV TGEI L I+ ES I GIRRI A+TGQ A + Sbjct: 715 PAWGKLSVEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYNVQRLANDFAT 774 Query: 737 ------------GQDEKLKSLASFL---------KVSQGNVVGRVEE-IWEEYRKLQLIH 774 ++ + K L L K S + ++++ I +E + Sbjct: 775 RLESFGKMPFGPAKEAEAKKLQVELNGLTISALSKSSLRDSFNKIQKSILDEQKAAAKAD 834 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDAL---QKKIQSGIIMLV 828 KR L + + D N + H + +V+ K + + + + ++ + L Sbjct: 835 NKRVLDQVTKFFE-EEGKDSNVLVHKVAWSPQVN-KAISETIKTVSAPKSGLKDKSVYLF 892 Query: 829 GIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS---------- 877 S +E K V+E F A G G P A + Sbjct: 893 SASPEEGKVVHACYVSEP----FKA-----------AGADG---PKWAAAVTPIIGGKAG 934 Query: 878 ----------GGPNGNKADQAIAGVASFLKK 898 G N + D+ + +++K Sbjct: 935 GKAGAATAIGQGTNPERVDEGVEEARKWIEK 965 >gi|330934785|ref|XP_003304705.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1] gi|311318587|gb|EFQ87206.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1] Length = 966 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 296/987 (29%), Positives = 457/987 (46%), Gaps = 127/987 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + + +R TFL++F++ GH +PSSS++P +DPTL+FTN+GM +K+IF G P Sbjct: 11 SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+LLT Sbjct: 71 LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130 Query: 118 FDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + +D +RLY+T ++ D EA +LWK G+ D I+ DNFW M + GPCGP Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKS-VGVPEDHILPGDMKDNFWEMGDQGPCGP 189 Query: 172 CSEIFFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSE+ +D E G + + IEIWN VFMQ+ ++ + LP IDTG Sbjct: 190 CSEVHYDLREPEGGKYRNVASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDH 278 MG ER+ +VLQ K +NYD D+F L + + + G + +RV+ DH Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQDITGAREYRGKFGAEDPDGIDTAYRVVADH 309 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336 +R SF IADG +P N GRGYV+RR++RR YAR T+ ++P L +MG Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394 +PE+ + + I E L E++ F K+LDRG V+ + + + + L GD ++LYDT+ Sbjct: 370 FPEIKKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + RGL D + + +AR S G + F + + Sbjct: 430 GFPVDLTKLMAEERGLKIDDKEVDDA-----QEKAREASKGDKKAAGALVKFDVHDLG-- 482 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKV 511 ++S++KAI + + +E G++ Sbjct: 483 ------------ALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTKEVPEGEQF 530 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V+ D+T FYAE GGQ DTG + DG D + G +H ++ G L + Sbjct: 531 GVLLDRTNFYAEQGGQEYDTGKLLVDGEAEISIDNVQVYAGYVLHTGYLKYGELSVGSEV 590 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + D R + NH+ TH+L++AL +LG+ V Q GS + P+ LRFD +H ++ AE Sbjct: 591 IAEFDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAE 650 Query: 632 LKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYND-----------RVRVV 679 L +E + I ++ V + + G A+ G Y D + Sbjct: 651 LDKVESISSKYIKEDAQVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSVGVPVEELLA 710 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--- 736 V+ E S CGGTHV TGEI L I+ ES I GIRRI A+TGQ A S Sbjct: 711 DVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYSVQRLAA 770 Query: 737 ----------------GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 ++ + K + L + + + ++ +++ K+Q + Sbjct: 771 EFQERVEAMGKMPFGPQKEAEAKKIGVDLNNLTISALAK-AKLRDQFAKIQKSILDEQKA 829 Query: 781 LNVEDLS--CHKIADV------NFMSHIIS---EVDSKELKSVMDAL---QKKIQSGIIM 826 D ++ FM + V+ K + + + + ++ + Sbjct: 830 AAKADNKRVMDEVNKFFEDDTKKFMVKKLDWSSNVN-KAISEAIKTISGPKSALKDRSLY 888 Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAV----DLARLSAKVLG-----------GGGGGG 870 L S +E K V+E NA A ++G Sbjct: 889 LFSASPEEGKVVHGCYVSEPFK---NAGADGPKWASAVTPIIGGKAGGKPGAPT------ 939 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 A G N +K D+ + +++ Sbjct: 940 ----AIGQGTNADKVDEGVEEARKWIE 962 >gi|331232484|ref|XP_003328904.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307894|gb|EFP84485.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 969 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 309/977 (31%), Positives = 460/977 (47%), Gaps = 111/977 (11%) Query: 1 MSNVSS-----------IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN 48 MS+ + +R TF E+FQ ++ H + SSS++P +DPTL+F N+GM +K Sbjct: 1 MSSTNQTSQFGDWPAHKVRKTFFEYFQNQHAHTFVHSSSVVPFDDPTLLFANAGMNQYKP 60 Query: 49 IFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK 103 IF G P + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK Sbjct: 61 IFLGTIDPSHPFKNLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 120 Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRIT 155 AI +AWDLLT+ + L + RLY+T + D E+ ++W + G+ DK++ Sbjct: 121 SEAIHMAWDLLTRVYALPKDRLYVTYFQGDPAQNLLPDLESKQIWIDL-GVHPDKVLPGN 179 Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215 DNFW M +GPCGPCSEI +D+ +++ +EIWN VF+Q+ ++ Sbjct: 180 AKDNFWEMGTSGPCGPCSEIHYDRV-GGRNAAELVNQDDPMVLEIWNNVFIQYNREPSGS 238 Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------- 268 LP +DTGMG ER+ +VLQ+KT+NYD D+FK L +++TG + Sbjct: 239 LKPLPARHVDTGMGFERLVSVLQDKTSNYDTDVFKPLFDRIQELTGARPYAGKLGEDDVD 298 Query: 269 --IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMH 324 +RVI DH+R+ +F I+DG +P N GRGYVLRRI+RR Y R Sbjct: 299 GIDTAYRVIADHVRTLTFAISDGGVPNNVGRGYVLRRILRRGARYVRKKFDVPIGNFFSR 358 Query: 325 LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--L 382 L P L +MG +PE+ ++E L E+ F TLDRG + + K+ L Sbjct: 359 LAPTLIDQMGDVFPEIRSKTEELKEILDEEEASFALTLDRGEKMFEKYAEKAKKEGKKNL 418 Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442 +G ++LYDT+G P+D+ + GID F A + ++ + E Sbjct: 419 DGQDVWRLYDTYGFPVDLTLLMAEEA-RLGIDHDGFEMAQAASKELSKGGKKKVVGTAVE 477 Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI- 501 ++ E D+ ++ +++ VKAI G+ Sbjct: 478 LDVHAIAE-----------------LESNDKVPKTDDSSKFASSSITATVKAIYYDGKFH 520 Query: 502 --VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-A 558 E S + ++ D+T FYAE GGQ DTG + + +V H Sbjct: 521 SSTEAVPSSSRCGIILDKTNFYAEQGGQENDTGSLTNPEKQTTFDVEDVQVYNGYVLHSG 580 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 +V G+L+ S+ D R + NH+ TH+L+ AL LG H+ Q GS + P LR Sbjct: 581 LVSEGVLQVGDSVSAAYDELRRWPIRNNHTGTHVLNWALRETLGDHIDQKGSLVAPSKLR 640 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVR 677 FD +H + +T EL IE N I+++ PV R M ++A G A+ G Y D VR Sbjct: 641 FDFSHKQQVTIDELSKIESTCNQWISKSFPVAAREMRLDEAKKIPGLRAVFGEAYPDPVR 700 Query: 678 VVSVE------------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 VV V +S CGGTHV T EI L +V ES I G+RRI A Sbjct: 701 VVVVGPNPFDLLDADLTDPKWSNYSVEFCGGTHVKLTSEIKQLVLVEESGIAKGVRRIVA 760 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLN 782 +TG+ ARS + L + + + ++ E L+ ++ +K KL+ + Sbjct: 761 VTGEEARSVSQQAKDIEAKLDQIIGLPVKDREAALKTFSVELAALEISVILKSKLKLKFS 820 Query: 783 VEDLSCHKIADV-----------------------NFMSHIIS-EVDSKELKSVMDALQK 818 ++A + M+ ++ +SK L L+ Sbjct: 821 QAQKELVELAKIQAKADEKKALQVVNDWIKEHPNERVMTSVLDLGSNSKALGVACGQLKS 880 Query: 819 KIQSGIIMLVGISK-EKKASVLIVVTE-DLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 ++G L ++ +KK + E DL + +NA +KVLGG G GG+P + Sbjct: 881 SGKAG--YLFSVNALDKKVFHASALPEQDLKAKPSWNAKLWMDQVSKVLGGKG-GGKPEL 937 Query: 875 AQSGGPN--GNKADQAI 889 AQ G DQA+ Sbjct: 938 AQGVGTYSGTENLDQAV 954 >gi|254252618|ref|ZP_04945936.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158] gi|124895227|gb|EAY69107.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158] Length = 914 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 298/674 (44%), Positives = 409/674 (60%), Gaps = 42/674 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y Sbjct: 21 MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYSRA 80 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT + L Sbjct: 81 TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWELLTTVYLLP 140 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPCSE 174 + +L++TVY ED+EA+ +W K G++ ++IIRI N +TGPCGPC+E Sbjct: 141 KDKLWVTVYQEDDEAYDIWAKEVGVATERIIRIGDNKGARYAVGQLLDDGDTGPCGPCTE 200 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+ Sbjct: 201 IFYDHGPDVWGGPPGSHEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 260 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF++LI+A+ +VT + N + +VI DH+R+ +FLI DG++P Sbjct: 261 AAVLQHVHSNYEIDLFQNLIKAAARVTEVAD--LNNNSLKVIADHIRACAFLIVDGVIPG 318 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR Sbjct: 319 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGDAYPELKEAEQRVTDVLRQ 378 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 379 EEERFFETIEHGMSILEAALAELDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERSVT 438 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA + L+ T F GY+ + Sbjct: 439 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 486 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ G V E +GQ VV D TPFYAE+GGQ+GD Sbjct: 487 ------------------AKVVALYVDGSSVNEVKTGQHAVVVLDHTPFYAESGGQVGDQ 528 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R + D K + HH +E+G L+ L ID Q R + NHSATH Sbjct: 529 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKIGDVLRAEIDAQRRARTQRNHSATH 588 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + Sbjct: 589 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 648 Query: 652 RIMNREDAIASGAA 665 R+M ++A+ GA Sbjct: 649 RVMPYDEAVKGGAM 662 >gi|189203303|ref|XP_001937987.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985086|gb|EDU50574.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 966 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 293/987 (29%), Positives = 454/987 (45%), Gaps = 127/987 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + + +R TFL++F++ GH +PSSS++P +DPTL+FTN+GM +K+IF G P Sbjct: 11 SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+LLT Sbjct: 71 LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130 Query: 118 FDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + +D +RLY+T ++ D EA +LWK G+ D I+ DNFW M + GPCGP Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKS-VGVPEDHILPGDMKDNFWEMGDQGPCGP 189 Query: 172 CSEIFFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSE+ +D E G + + IEIWN VFMQ+ ++ + LP IDTG Sbjct: 190 CSEVHYDLREPEGGKYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDH 278 MG ER+ +VLQ K +NYD D+F L + +++ G + +RV+ DH Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQEITGAREYRGKFGAEDPDGIDTAYRVVADH 309 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336 +R SF IADG +P N GRGYV+RR++RR YAR T+ ++P L +MG Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394 +PE+ + + I E L E++ F K+LDRG V+ + + + + L GD ++LYDT+ Sbjct: 370 FPEIKKKQQDIVEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + RGL D + +AR S G + F + + Sbjct: 430 GFPVDLTKLMAEERGLKIDDKEVEEA-----QEKAREASKGDKKAAGALVKFDVHDLG-- 482 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKV 511 ++S++KAI + + +E G++ Sbjct: 483 ------------ALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTKEVPEGEQF 530 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V+ D+T FYAE GGQ D G + DG + G +H ++ G L + Sbjct: 531 GVLLDRTNFYAEQGGQEYDMGKLVVDGEACIDITNVQVYAGYVLHTGYLQDGELSVGSEV 590 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + D R + NH+ TH+L++AL +LG+ V Q GS + P+ LRFD +H ++ AE Sbjct: 591 IAEFDESRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSEAE 650 Query: 632 LKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYND-----------RVRVV 679 L +E + I ++ V + + G A+ G Y D + Sbjct: 651 LDKVESISSKYIKEDAKVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSVGVPVEELLA 710 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--- 736 V+ E S CGGTHV TGEI L I+ ES I GIRRI A+TGQ A Sbjct: 711 DVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYRVQRLAT 770 Query: 737 ----------------GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 ++ + K + L + + + ++ +++ K+Q + Sbjct: 771 QFQERVEAMGKMPFGPQKEAEAKKIGVDLNNLTISALAK-AKLRDQFAKIQKSMLDEQKA 829 Query: 781 LNVEDLS--CHKIADV------NFMSHIIS---EVDSKELKSVMDAL---QKKIQSGIIM 826 D ++ FM + V+ K + + + + ++ + Sbjct: 830 AAKADNKRVMDEVNKFFEDETKKFMVKKLDWSSNVN-KAISEAIKTISGPKSALKDRSLY 888 Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAV----DLARLSAKVLG-----------GGGGGG 870 L S +E K V+E NA A ++G Sbjct: 889 LFSASPEEGKVVHGCYVSEPFK---NAGADGPKWASAVTPIIGGKAGGKPGAPT------ 939 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 A G N +K D+ + +++ Sbjct: 940 ----AIGQGTNADKVDEGVEEARKWIE 962 >gi|229817702|ref|ZP_04447984.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM 20098] gi|229785491|gb|EEP21605.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM 20098] Length = 892 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 310/923 (33%), Positives = 476/923 (51%), Gaps = 66/923 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I +L++F + H ++PS+SLI N PT +FT +GMVPF G++ + + Sbjct: 1 MRTSEIAKRYLDYFAAHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTAPHPRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + D +L++T + +DEEA LWK G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSLWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 175 VDRGPEF-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G KY N V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKNNIYETDEVYPVIEAAERLSGHKYGENEAFDVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG E +M L P M ++YPEL + + Sbjct: 294 GVRPSNTGRGYVLRRLLRRTVKAMRALGVQEAVMPTLFPTSKAAMEASYPELNKTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E E++ F +TL+ G + D +S + ++G AFKL+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFLRTLEAGTEIFDMAVSKAKESGKGTVSGSDAFKLHDTYGFPIELTLEMAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDF-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q+G+ V +EV+ D+TPFYAEA Sbjct: 471 ---------------------SARATVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509 Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + D L++ DVQK + + VH + G L + ID R + Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTQVNANIDLNRRGAI 569 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VN+ + Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNEKL 629 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +NL V T+ M +DAIA GA L G KY D VRVVS+ S LCGGTH+ G Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHIDHVG 686 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+SE+S+ +G+RR++A+ G A + + + L+ L + RV + Sbjct: 687 KIGAINIMSEASVGSGVRRVDAVVGAGAYEYNAREHALVSQLSDKLNARPDELAERVNAL 746 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--------DSKELKSVMDA 815 + ++ A + + D N + + L+ + Sbjct: 747 LAKLKESDRRLAAMYEGQLAATV-PQLVQDANASAASVKVAAKNVGHFGSFDALRKTVMD 805 Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871 ++ ++ ++ L G+S E K V + D A DL R ++K+LGGGG GG+ Sbjct: 806 VRARLGEDAPVVVALAGVSAEDKPMVAVATNAAARDLGIKAGDLVRGASKMLGGGG-GGK 864 Query: 872 PHMAQSGGPNGNKADQAIAGVAS 894 P AQ GG + +K D+A+ + + Sbjct: 865 PDFAQGGGADASKIDEALEALKA 887 >gi|50286987|ref|XP_445923.1| hypothetical protein [Candida glabrata CBS 138] gi|49525229|emb|CAG58842.1| unnamed protein product [Candida glabrata] Length = 956 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 293/965 (30%), Positives = 467/965 (48%), Gaps = 91/965 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 ++R TF+++F++ H+ + SS ++P +DPTL+FTN+GM +K IF G P Sbjct: 10 TAHNVRKTFMDYFEEKNHKYVKSSPVVPFDDPTLLFTNAGMNQYKPIFLGTVDPSSDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI AW LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIDYAWKLLTEV 129 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + RLY+T ++ D EA LWKK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPADRLYVTYFEGDAKQGLEPDTEALDLWKK-VGVPEDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +E+WNLVFMQF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEVWNLVFMQFNREQDGSLKSLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L +++ G + + N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFMPLFARIQEITGARPYAGKFGDEDKDNIDTTYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + F +ADG +P NEGRGYVLRRI+RR +AR L P L ++ +P Sbjct: 308 TLVFALADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGNFFSSLAPTLIDQVKHIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396 E+ + + E L E+ F KTLDRG + + + + E L+G ++LYDT+G Sbjct: 368 EVAKDPSFLFEILDEEESSFSKTLDRGERIFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + + L ID F +A +E ++ G + S+ E Sbjct: 428 PVDLTELMAEEQNLK-IDGPGFEKAKQESYEASKRGGQKGGDDLIKLNVHSIAELNSENV 486 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 V + + + V E G+K ++ Sbjct: 487 ------------------PKTDDSFKYGNENVEGKILKLHDGEKFVTEISEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H + G L + ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDKAEFSVENVQLYNGFVFHTGTLSEGKLSVDDVIIASY 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L++AL LG+ + Q GS + P+ LRFD +H K +T E+ + Sbjct: 589 DELRRFPIKNNHTGTHILNYALKETLGNDIDQKGSLVAPEKLRFDFSHKKALTIEEVTKV 648 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVE-----------Y 683 E+ N+ I N V + + + A + A+ G Y D VRVVSV Sbjct: 649 ENICNEQIKNNYNVYYKDVPLDLAKSIYSVRAVFGETYPDPVRVVSVGKPVDDLLANPSN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736 E+ G +S CGGTHV +TG+I I+ ES I GIRRI A+TG A Sbjct: 709 EEWGKYSIEFCGGTHVKTTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRVADQFAA 768 Query: 737 ------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 +++KLK L L +S+ ++ + +I + + AK++ Sbjct: 769 DLEAADKLPFSPLKEKKLKELGVKLGQLSISVISKNDLKTKFTKIEKVVKDEVKSRAKKE 828 Query: 779 LQLNVEDLSCH--KIADVNFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834 +L ++++ H + + F I ++K + ++ ++ + + L+ G E Sbjct: 829 AKLVLDEVKGHFTENPESQFFVKFIDVPANAKAITEAVNYMKTSAKDKSMYLITGNDPEG 888 Query: 835 KASVLIVVTEDLLDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 + + +++ L++ A +LA + ++GG GG+ ++ Q G + AI + Sbjct: 889 RVAHGCFISDVALEKGIAGQELAGKVSGIIGGKA-GGKGNVFQGVGDKPAAINDAINEIT 947 Query: 894 SFLKK 898 + K+ Sbjct: 948 TAFKE 952 >gi|145616046|ref|XP_361064.2| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15] gi|145009817|gb|EDJ94473.1| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15] Length = 961 Score = 662 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 312/969 (32%), Positives = 470/969 (48%), Gaps = 95/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVY- 58 ++R TFL +F++ GH ++PSSS++P +DPTL+FTN+GM FK IF G P+ Sbjct: 8 TAETVRKTFLNYFEERGHTVVPSSSVVPHSDPTLLFTNAGMNQFKPIFLGTIGKTDPMAG 67 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI ++W+LLTK Sbjct: 68 LKRAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISMSWELLTKV 127 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY+T ++ D EA LW + +G+ D I+ DNFW M + GPC Sbjct: 128 YGLDPARLYVTYFEGNPEMGLEPDLEAKNLWLE-NGVPEDHILPGNMKDNFWEMGDQGPC 186 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WN VF+QF++Q + LP +DTGMG Sbjct: 187 GPCSEIHYDKV-GGRNAAHLVNMDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMG 245 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ + LQ KT+NY D+F L ++V G +RV+ DH+R Sbjct: 246 FERLVSALQNKTSNYATDVFSPLFARIQEVTGAREYTDKYGKDDADGIDTAYRVVADHIR 305 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYP 338 +F IADG +P N+GRGYV+RR++RR + YAR E +LP L MG +P Sbjct: 306 LMAFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGGFFSQILPTLVEHMGEQFP 365 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL Q + I+E L E+E F +TLDRG + ++ + L+G ++LYDT G Sbjct: 366 ELGQKQQDIKEILDEEEEAFARTLDRGEKQFEKYASMAIKAGENKLSGSDVWRLYDTFGF 425 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P D+ + + RG+ + R +AR S + Sbjct: 426 PEDLTKLMAEERGITID-----EAEVSVAREKAREASKAVKESVQ--------------T 466 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513 F D+ R S+ E + L ++S V I + +E + + Sbjct: 467 FAKLDVHRISELENELKVTRTDSEAKYLKGDITSKVYLIYTGKDFLKSSKEIPPKTPLGL 526 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE+GGQ+ DTG + DG+ ++ G +H+ +E G L S++ Sbjct: 527 ILDKTNFYAESGGQIADTGRIVIDGVAEFKVLDTQEFGGYVLHNGYLEYGELTAGDSVIC 586 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R+ + NH+ TH+L+H+L +LG ++Q GS + + LRFD +H +T ELK Sbjct: 587 EYDELRRQPIRNNHTGTHILNHSLREVLGDDINQKGSLVDNEKLRFDFSHKTGVTVPELK 646 Query: 634 SIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682 IED N I QN T+ + G A+ G Y + VRVVS+ Sbjct: 647 KIEDLSNAYIRQNCKTFTKDVDLDLAKQIEGVRAVFGETYPNPVRVVSIGIEVDMLLENP 706 Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HL 735 + S CGGTHV TG + + IV ES I GIRRI A TG A Sbjct: 707 KNPEWRKVSVEFCGGTHVDQTGIMKDMIIVEESGIAKGIRRIVAYTGDAAHQVQRLAADF 766 Query: 736 MGQDEKLKSL------ASFLKVSQGNVVGRV------EEIWEEYRKLQLIHAKRKLQLNV 783 + ++L+SL + +K +Q ++ V +E+ + K+Q + + + Sbjct: 767 SKRIDELESLPFGTEKEAAIKTTQVDLEQLVISSVTKDELRTRFTKIQKAVVEEQKKKQK 826 Query: 784 EDL------------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + K F+ + ++K + +M+ + K + + + G S Sbjct: 827 AESKKALDTVAEHFKKPEKAESKVFIGQLPISANAKAVSEIMNFYKSKDKEKSVYVFGGS 886 Query: 832 KEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KE+ A V + V T A A ++V+GG GG P Q G +QA+ Sbjct: 887 KEEGAVVHGVYVGTALASQGITAEQWANAVSEVIGGKSGGKEPTR-QGQGTKPENLEQAV 945 Query: 890 AGVASFLKK 898 A FL + Sbjct: 946 AEAEKFLTE 954 >gi|167518337|ref|XP_001743509.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778608|gb|EDQ92223.1| predicted protein [Monosiga brevicollis MX1] Length = 1000 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 297/925 (32%), Positives = 444/925 (48%), Gaps = 84/925 (9%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 N + +R T+++FF +K H PSSS +P +DPTL+F N+GM FK +F G P Sbjct: 8 NAAKVRQTYIDFFVEKKEHVFWPSSSSVPHDDPTLLFCNAGMNQFKKVFQGTVDPNSDMA 67 Query: 59 --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AIQ +++LLT+ Sbjct: 68 KVSRTVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKAEAIQWSFELLTE 127 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + L RLY T ++ D EA +LW K+ L AD ++ DNFW M TGP Sbjct: 128 VYGLSADRLYATYFEGDTEQNIPEDVEAKELWLKL--LPADHVLPGNKKDNFWEMGATGP 185 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ +D+ +++ +EIWNLVFMQF ++ +LP IDTGM Sbjct: 186 CGPCSELHYDRI-GGRNAASLVNQDDPDVLEIWNLVFMQFNREPDASLRLLPARHIDTGM 244 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------IVNHRVIVDHLR 280 GLER+ +VLQ+K +NYD D+F+ +QV G + +RV+ DH+R Sbjct: 245 GLERLVSVLQDKRSNYDTDVFQPYFDVIQQVCGCRPYAGKVGKEDDGIDTAYRVLADHIR 304 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + I+DG P N GRGYVLR I+RRA+ +A L E L+P + ++G A+PE Sbjct: 305 TLTISISDGGEPDNTGRGYVLRLIIRRAVRFAEDYLKAPEYFFSSLVPTVVEQLGDAFPE 364 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + + E L++E+++F +TL+RG L D +++G VA++L+ T+G P+D Sbjct: 365 IKRDPEHVIEVLKAEEKQFRRTLNRGRRLFQRAADKAT-DGVIDGHVAWQLWGTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + + RGL +D +F R A S E I + + Sbjct: 424 LTKVMAEERGLT-VDEKTFEA----AREEAVKVSQMGKKMAIEGIDLDVHDL-------- 470 Query: 460 YDLLRGSKFMKEDRKVLCQK----PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ---KVE 512 D L+ D + + V A+ + V+ V Sbjct: 471 -DKLKADGIAATDDSFKYDYGLVGDNSYEFKDLEAKVVALRTESGFVDSLDGSDDSVNVG 529 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSL 571 VV D+T FYAE GGQ DTG L T + +K +H ++ G L+ +L Sbjct: 530 VVLDRTNFYAEQGGQTYDTGFFRDANGELDFTVMDVQKKGPYCLHIGVLSNGTLKVGDTL 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L+ D + RR NH+ATH+L+ AL +LG Q GS + P+ LRFD T K +T + Sbjct: 590 TLSFDVERRRPCMSNHTATHVLNFALRKVLG-EADQKGSLVEPERLRFDFTAKKGMTIEQ 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV-- 688 ++ E VN+++ PV A +G A+ G Y D VRVVSV V Sbjct: 649 IQQTEKLVNEVVNAKKPVDAMDAPLASAREINGLRAMFGETYPDPVRVVSVGAIVKDVLD 708 Query: 689 ---------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 +S CGGTHV ++G+I+ I++E +I GIRRI A+TG AR + Sbjct: 709 DPVSEVALANSIEFCGGTHVKNSGDIVQFAILNEEAISKGIRRIVAVTGSEARKAQTEAN 768 Query: 740 EKLKSLASFL----------KVSQGNVVG-RVEEIWEEYRKLQLI-----HAKRKLQLNV 783 + L +VSQ + R + I + L +RK Sbjct: 769 RLDAEVRDDLTMKEVVALDTEVSQAAIPATRKDAIRSRLKALHKKHSDVLKERRKAMAGN 828 Query: 784 EDLSCHKIAD---VNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 + ++ + + ++ + K + + L+ M G+ +E + Sbjct: 829 AEKRAKELLEEEAKPVVVEVLEVGANGKAIGEALKVLKVGRPDTAFMFFGV-EEGGVAFN 887 Query: 840 IVVTEDLLDR-FNAVDLARLSAKVL 863 +V E L+ + A D KVL Sbjct: 888 CMVPEALVAKGLKAGDWVSEVNKVL 912 >gi|254717705|ref|ZP_05179516.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1] Length = 768 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 390/776 (50%), Positives = 524/776 (67%), Gaps = 36/776 (4%) Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F L + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+ Sbjct: 1 FGLPKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFY 60 Query: 178 DQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS E +G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A V Sbjct: 61 DHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAV 120 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEG Sbjct: 121 LQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEG 180 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ Sbjct: 181 RGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEET 240 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG +D Sbjct: 241 RFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTE 299 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 300 GFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE--------------- 344 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T ++ ++V+ V G+ + VV +QTPFY E+GGQ GDTG G Sbjct: 345 --------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISG 396 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH A Sbjct: 397 EGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEA 456 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M Sbjct: 457 LRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAV 516 Query: 657 EDAIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +DAIA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+ Sbjct: 517 DDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRII 576 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL+ Sbjct: 577 SEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLE 636 Query: 772 LIHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A + +L + + + VNF+ I++ V ++LK + D +K++ SG++ Sbjct: 637 RELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVV 696 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + +G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+ Sbjct: 697 LFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 752 >gi|110004987|emb|CAK99318.1| probable alanyl-trna synthetase protein [Spiroplasma citri] Length = 918 Score = 661 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 283/937 (30%), Positives = 474/937 (50%), Gaps = 96/937 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++IR +L+FF+ H LPS SLIP +DP+L++ NSG+ K F G++ P +T Sbjct: 5 TANAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+ L K Sbjct: 65 NSQKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGF 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +LY+T+Y +D+EA+++W+ + GLS ++II+ + NFW + GPCGP +EIF+D+G Sbjct: 121 DPAKLYVTIYKDDQEAYEIWRNVIGLSDERIIKGDKDTNFWEIG-AGPCGPNTEIFYDRG 179 Query: 181 ECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E E +RY+E+WN+VF Q+ LP+ +IDTG GLER+A+ Sbjct: 180 EKYDPEQIGLKLLQDDLENDRYLEVWNIVFSQYNNNGNGTYTDLPRKNIDTGAGLERIAS 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------IVNHRVIVDHLRSS 282 ++QE N++ DLF +I+A E++ KY + +VI DH+R+ Sbjct: 240 IIQETPTNFETDLFMPIIKAVEKLVNGKYHYDETALFSNNSEQLKINTAFKVIADHIRAV 299 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I DG P N+ RGYV+RR++RRA Y + + TEP + L+ + M Y L++ Sbjct: 300 TFAIVDGAFPGNKDRGYVIRRLIRRASLYGKKIDLTEPFLFKLVGTVVKIMQEYYSYLVE 359 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 + ++E+ + E+++F KTL++G L + V + ++ + AF+L++++G P+++++ Sbjct: 360 KQPIVEQAVLDEEKKFLKTLEQGSKLFNEVKTK---YGTISKEHAFRLFESYGFPIELIE 416 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 + G +D F++ LE ++ +R + + + + F+ + A+QF+GY+ Sbjct: 417 EEAHEVG-INVDRAGFDELLENAKTISRTNRKDIKAIHLQSELFTKLDV--ASQFVGYE- 472 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 ++ + + + V + ++ +TPFYA Sbjct: 473 ---------------------YEQVNNTEIVFMFADDKPVTKLT-NTTGYIILKETPFYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ D G + D + DVQ+ H + G L + +ID R Sbjct: 511 EKGGQAADHGLILKDNTTAYVLDVQQ-GPNKQHLHFVKVEGTLAIGDLVNASIDSDRRFY 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHS THL+H AL +LG+HV Q GS + LR D+TH++ IT AE+ ++E +V Sbjct: 570 TRKNHSGTHLIHAALREVLGNHVMQTGSYNDAERLRIDITHNQAITPAEITAVEGSVAKA 629 Query: 643 IAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +P + + A A A KY+ VR+V G +S LCGGTHV++ Sbjct: 630 IKTAIPCEIIYTDMQTALDVHHALAFFTEKYDAEVRIVKF-----GTYSCELCGGTHVAN 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQ----------------RARSHL---------- 735 + ++ L + S AG RI AIT A ++ Sbjct: 685 SQDVEDLLVTGLESKGAGTFRIHAITSNKTIASYLNEQFLKEKTEAINYFDKYNQGKAAL 744 Query: 736 --MGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788 D+ + +++ + V + E++++ Q + +Q V+ + Sbjct: 745 LDQSLDQTWEQISNLTVSKPNWKQLKELVAQFKEDFKRWQKQYDNILIQQFVKQYNTFLP 804 Query: 789 HKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847 +NF++H ++VD LK ++D + + ++ +I LV +S E +A++++ V++DL Sbjct: 805 QDKNGINFLTHQFTTKVDINALKVLIDDYKARYRNLLIFLVDVSDETQATLIVGVSDDLH 864 Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 DR+ A + + +L G GGG +AQSG N +K Sbjct: 865 DRYQAGKIIQQLNPLLN-GKGGGNNSVAQSGFNNKDK 900 >gi|226328743|ref|ZP_03804261.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198] gi|225201929|gb|EEG84283.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198] Length = 589 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 284/617 (46%), Positives = 383/617 (62%), Gaps = 44/617 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G + Y Sbjct: 3 KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+ Sbjct: 63 TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEEWFN 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMDPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+ VLQ +NYDIDLF+ LI++ QVT + RVI DH+RS SFL+ DG++ Sbjct: 243 RITAVLQHVNSNYDIDLFRSLIKSVAQVTNATD--LENKSLRVIADHIRSCSFLVCDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + +LG + L+ L M A EL + + ++E+ L Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIEVMAEAGEELKRQQAIVEKVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L++L D+IL G+ AF+LYDT+G PLD+ D+ R + Sbjct: 361 KTEEEQFARTLERGLQLLDEELANLT-DDILPGETAFRLYDTYGFPLDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+EEQR RAR S + SL + ++F GYD Sbjct: 420 -VDENGFDVAMEEQRKRARE------SSGFGTDYNSLIKVDSRSEFSGYDHDEQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + AI G+ V E +G++ + ++T FYAE+GGQ+GD Sbjct: 467 -----------------QGTITAIFHNGQSVTELKAGEEGIIFLNKTAFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G ++TD QK + H V G + TID R + +NHSATH Sbjct: 510 GVLTGKDSLFEVTDTQKYGK-AIGHIGKVNVGSFIVNHKINATIDIARRDAIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQN 608 LLH AL +LG+HV+Q Sbjct: 569 LLHAALRQVLGTHVTQK 585 >gi|322712022|gb|EFZ03595.1| alanyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23] Length = 952 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 301/963 (31%), Positives = 464/963 (48%), Gaps = 94/963 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVYQ--AV 61 +R F ++ Q+ GH ++PS S++P +DPTL+FTN+GM FK IF G Q P+ Sbjct: 11 VRKAFFDYMQQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD Sbjct: 71 ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY T ++ D+EA +LW G+ D+I+ DNFW M + GPCGP S Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLD-IGMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWNLVFMQF++Q LP IDTGMG ERM Sbjct: 190 EIHYDKI-GGRNAAHIVNQDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGFERM 248 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 + LQE +NY D F L + ++VTG++ + +RVI DH+R+ SF Sbjct: 249 VSALQETDSNYATDCFTPLFKQIQEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRTLSF 308 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG +P ++GRGYV+RRI+RR + YAR E +LPAL + MG +PEL++ Sbjct: 309 AITDGAVPNSDGRGYVIRRILRRGVRYARKYLNAEIGSFFSKILPALVSHMGDQFPELVK 368 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 +L I+E L E+E F +TLDRG + + + L+GDV ++LYDT G P+D+ Sbjct: 369 KQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKAGVKKLDGDVVWRLYDTFGFPVDL 428 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + RG + + + +AR S + + + + Sbjct: 429 TQIMAEERG-----LEIDESEVSVAKEKAREASKAVKASVDTFAKLDVHQI--------- 474 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQ 517 + + + + V+ I +E + ++ D+ Sbjct: 475 ------AQLDQQKVARTDDDAKFVKGDSKGKVQLIFDGKTFHNSTKELPEKTAIGILLDK 528 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE+GGQ+ DTG + D + + G +H +E G L + ++ D Sbjct: 529 TNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYGGFILHSGYIEYGALSSGDEVICEYDE 588 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+H+L +LG ++Q GS + + LRFD +H + EL+ IE Sbjct: 589 LRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELRKIET 648 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEY-----------ED 685 N+ I +N + ++ + G A+ G Y + VRVVS+ ++ Sbjct: 649 LSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDPKKQE 708 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------- 737 +S CGGTHV TG I L +V ES I GIRRI A TG+ A Sbjct: 709 WRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGEAAHQVQREAAEFSKKL 768 Query: 738 -----------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 +D + K ++ L +++ + R ++I Q K + Sbjct: 769 DILEAMPFGPAKDAQTKVVSQELSQLVISTLTKDELNTRFQKIATSVIAEQKKRQKAEAG 828 Query: 781 LNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 V + + DV++ + ++K L V Q K ++ + + G S+E+ A Sbjct: 829 AAVGCVIKHFEEKEDVDYFVGRLPISANAKALTEVFKHFQAKDKTKSVYIFGGSQEEGAV 888 Query: 838 V--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + V + A A + + V+GG GG P Q G D A+ + Sbjct: 889 VHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEPTR-QGQGTKPENIDDAVEVARKW 947 Query: 896 LKK 898 L++ Sbjct: 948 LEE 950 >gi|88608446|ref|YP_506054.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama] gi|123492337|sp|Q2GEP2|SYA_NEOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88600615|gb|ABD46083.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama] Length = 848 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 350/893 (39%), Positives = 508/893 (56%), Gaps = 56/893 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R F++FF KNGH LPS+SL+P +DP+LMF N+GMVPFK F + + ++ T QK Sbjct: 5 LRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVTAQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW +T+E L +++LY Sbjct: 65 CVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKKKLY 124 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ITVY ED+EAF++W K++G KI RI+T+DNFW M + GPCGPCSEIF+D GE + G Sbjct: 125 ITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHLSGD 184 Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 +P ++ GERY+EIWNLVFMQ+ ++ E + IDTGMGLER+A +L+ +NY Sbjct: 185 IPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTDDNYK 244 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 LF+ +++ S+ VTG K N H+VI DHLRS+SFLIADG+LP N GR YVLRRI+ Sbjct: 245 TKLFEAIVKESQNVTGNKD---NQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRII 301 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA+ Y+ LG+ L+ L L MGS Y EL +A+ LI +TL E++ F TL G Sbjct: 302 RRAVRYSHALGFDTVLLPKLFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKSG 361 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 + LL+ V S + + + L+GD+AF LYDTHG PLDI DIL R +D F + ++ Q Sbjct: 362 MKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDILKER-KISVDEEGFAERMKMQ 420 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 R A+A + + T+ ++ ++G T FIGY+ G Sbjct: 421 RLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGL------------------- 461 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 +++ AI E K+ ++ DQT FY E+GGQ D G G+ L++ Sbjct: 462 ----ALILAI-------TEKEGSNKLTIILDQTIFYPESGGQESDQGIIEGENTLLKVEK 510 Query: 546 VQKKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 V K EG+ +H + RG + + + L ID R L+ NHSATH+LHH L LG+H Sbjct: 511 VYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILHHVLRKRLGAH 570 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 VSQ GS + P LRFD +HS+ IT EL IED +N +I + PV+T I ++AI GA Sbjct: 571 VSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEAIRDGA 630 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 L G KY+D VRVVS+ + LCGGTHV + I L+ I+S SS+ G+RRIE Sbjct: 631 IGLFGEKYDDTVRVVSIGE------AVELCGGTHVKKSSAIGLVKILSASSVAHGVRRIE 684 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNV 783 A+T A ++ ++ + ++ + Q + + + Sbjct: 685 AVTHLTALQYIREAEQ----------AQLYQLTEHQAKLKAMQKSHQKEITRVYQSIVTN 734 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 + + V ++ + + + L S+ ++ K +++V + LI++ Sbjct: 735 AEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTG---VLIVHTELSEALYSLIILD 791 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +++ + +D + + G P++ Q+ D+ + ++ + Sbjct: 792 KEIFKNISFIDSMKETIDKSHGKVTPSVPYVIQATFSKKEDLDRCLKNLSELV 844 >gi|320164762|gb|EFW41661.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864] Length = 954 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 294/965 (30%), Positives = 443/965 (45%), Gaps = 91/965 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 S++R F++FF GHE +PSSS+IP +DPTL+F N+GM FK F G P Y Sbjct: 10 ASAVRQQFVDFFVSKGHEFVPSSSVIPHDDPTLLFANAGMNQFKPAFLGTADPNSRMAKY 69 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT + Sbjct: 70 RRTANSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKKEAISWAWELLTVVY 129 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY+T + + D EA +W GL A++++ +NFW M ETGPCG Sbjct: 130 KLDPNRLYVTYFGGNEKAGLEADLEARDIWLS-VGLPAERVLPYGMKENFWEMGETGPCG 188 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI FD+ + + +EIWNLVF+QF ++ Q LP+ +DTGMGL Sbjct: 189 PCSEIHFDRIGGGRDAAALVNADDPDVLEIWNLVFIQFNREVDQSLRKLPRCHVDTGMGL 248 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281 ER+ +VLQ K +NYD D+F A + TG++ + +RV+ DH+R+ Sbjct: 249 ERIVSVLQNKRSNYDTDVFVPYFTAIQAATGIRAYTGKVGADDTDGLDMAYRVVADHIRT 308 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P GR YVLRR++RRA+ Y A LG L+ + T +G +PEL Sbjct: 309 LTIALADGGAPGPTGRDYVLRRVLRRAVRYCAEKLGAKPGFFASLVDVVGTSLGGFFPEL 368 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 +++ I++ + E+ +F KTLDRG L + + K+ ++ G VA++LYDT+G PLD+ Sbjct: 369 VRSPQDIKDIINEEEAQFRKTLDRGKRLFERAAA-ASKNGVIEGLVAWRLYDTYGFPLDL 427 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + L ID F A + + + G E + + Sbjct: 428 TELMAAELKLT-IDKPGFKIAEADAKEAS----KGKVDEAEETVVLDVHNISA------- 475 Query: 461 DLLRGSKFMKEDRKVLCQ---KPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEV 513 L+ D + + AI E+V G KV + Sbjct: 476 --LKDKGVPATDDSPKFNYRSENDKYTFESAVGSIVAIALGKELVSTVDFESLKGAKVGI 533 Query: 514 VFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V D+T FYAE GGQ+ DTG + + + K +H ++ G L L Sbjct: 534 VLDKTNFYAEQGGQIFDTGFATRVDNEASEFAIESVKVYGPYVLHVGRLQGGSLSIGDKL 593 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L+ID R + NH+ TH+L+ AL +LG+ V Q GS + PD RFD +H K +++ E Sbjct: 594 TLSIDDIRRLPIMANHTTTHMLNFALREVLGNSVDQKGSLVRPDNFRFDFSHPKAVSTEE 653 Query: 632 LKSIEDNVNDIIAQN-LPVVTRIMNREDAIASGAAALLGTKYNDRVR-----------VV 679 L+ IE VNDII +N +G A+ Y D VR + Sbjct: 654 LRKIEKIVNDIIEKNETVYRVPTALHLAKEVAGLRAVFDEVYPDPVRVVSVGVPVEKLLA 713 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 +S CGGTH+ T + I E I GIRRI ITG+ A D Sbjct: 714 DPASASWKGYSIEFCGGTHIDRTRDARRFAIFREEGIAKGIRRISGITGKEAIEAYKTAD 773 Query: 740 EKLKSLASFLKVSQG----NVVGRVEEI---------WEEYRKL-----------QLIHA 775 + + ++ G + +E + +E + + Sbjct: 774 KLEAKVKQVSEIPIGQLGRELPSLIESVDTAVIPSFRKDEIKAAIAAISKRVSDHEKAQQ 833 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + ++ + A F+ + +++ + M A + +LV + Sbjct: 834 AEQTKIATAAVKERIDAGAPFVVAFV-DINGN--RKAMSAGLSAAKDAAGLLVSKDGDS- 889 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP---NGNKADQAIAGV 892 + V + L+ + A + + K L GG + Q+ G + D A Sbjct: 890 IIAVASVPKALVGKIKAGEWVTEAVKSLSNTKTGGADTVGQASGTGSDHAAVIDAATKFA 949 Query: 893 ASFLK 897 A+ L+ Sbjct: 950 AARLQ 954 >gi|221116701|ref|XP_002160302.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 998 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 299/966 (30%), Positives = 469/966 (48%), Gaps = 87/966 (9%) Query: 2 SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 +R F++FF K H +PSSS IP DPTL+F N+GM FK++F G P Sbjct: 42 KTAKQVRQDFIDFFVKKYDHIFVPSSSTIPHEDPTLLFANAGMNQFKSLFLGTADPNSDF 101 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG +FK+ I +W+LLT Sbjct: 102 AKLKRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDFFKKEIIAWSWELLT 161 Query: 116 KEFDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L++ R Y+T + DEEA + W ++ GL + ++ +NFW M ETGPC Sbjct: 162 DVWGLEKERFYVTYFGGADGVPADEEAKQFWLEL-GLPPNHVLPFGMKENFWEMGETGPC 220 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ +D+ + + +E+WNLVF+QF ++ + LP +DTG+G Sbjct: 221 GPCSELHYDRI-GGRDASNLVNMDVPDVLEVWNLVFIQFNREVDGQLVPLPNQHVDTGLG 279 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD D+F A Q TG+K + + +RVI DH+R Sbjct: 280 LERIISVLQNKMSNYDTDVFTPYFDAIHQATGIKPYLGLVGPDDKDGVDMAYRVIADHIR 339 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ +A L + L+ +CT +GS YP Sbjct: 340 TLTVALSDGGRPDNVGRGYVLRRILRRAVRFATEKLNCKPGVFASLVDVVCTSLGSVYPN 399 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 +++ I++ + E+ +F KTL RG L + D I+ GD+A++LYDT+G P D Sbjct: 400 ILKDPQTIKDIINEEESQFLKTLARGRRLFNRTADKTT-DGIIAGDLAWRLYDTYGFPSD 458 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + R L +D++ + + + ARA G + ++ F+ Sbjct: 459 LTILMAEERNLK-VDMVGYEVLKAKAQEMARAR--GSEVEDIYSLDVHAIDELKTKGFV- 514 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + + + + +IV A+ + V+E +G K V+ D+T Sbjct: 515 -----QTDESPKYNYEKDEHGNYGNFSLCKTIVTALRVNKQFVDEVTNG-KCGVLLDRTS 568 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQL DTG I G ++ + G +V H G L+ + +ID Sbjct: 569 FYAEQGGQLFDTG-YINLGEEVEFAVNDVQIHGGYVLHVGNLVGTLKVGDKVTCSIDESR 627 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR L NH+ATHLL+ AL +L Q GS + PD LRFD T ++S ++K ED Sbjct: 628 RRSLMNNHTATHLLNFALRKVLVDDADQRGSLVAPDKLRFDFTAKGALSSEQVKMTEDIT 687 Query: 640 NDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE---------YEDGGVH 689 +II Q+ V G A+ Y D VRV+S+ + G Sbjct: 688 REIIKQDQKVFASASSLAVAKNIQGLRAIFDEVYPDPVRVISIGYDLKDLINDPQAGYKT 747 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS-- 747 S CGGTH+ STG+++ IVSE +I GIRRI ++TG A ++ +L Sbjct: 748 SVEFCGGTHLKSTGDVVEFAIVSEEAISKGIRRIVSLTGSDALKAHKRANQLASTLNEFS 807 Query: 748 ---------------FLKVSQGNVVGRVE----------EIWEEYRKLQLIHA--KRKLQ 780 L + + E+ E+ + ++ +R + Sbjct: 808 EYVEVQKNNNTLNMRQLSQQIAKITEEISESLIPAWCKHELREKLKSIKKHLDDTERMEK 867 Query: 781 LNVEDLSCHKIADV-------NFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLVGISK 832 + ++ K +++ F+ + + ++K L + + +++ + ML + Sbjct: 868 ASRQNRVIEKASEIATLHLNEPFIVQRMEDGCNAKALDAALKSVKAVAPNLSAMLFSVDT 927 Query: 833 E-KKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E L V ++++D A + + + V+GG G GG+P AQ G + D+A+ Sbjct: 928 ETNTVICLCQVPQNVVDNTSLKANEWVKEVSTVIGGKG-GGKPISAQGSGDKMQEIDKAV 986 Query: 890 AGVASF 895 SF Sbjct: 987 EVAKSF 992 >gi|75858922|ref|XP_868801.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4] gi|40747680|gb|EAA66836.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4] Length = 981 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 296/989 (29%), Positives = 464/989 (46%), Gaps = 115/989 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R TFL++FQ GH + SS + P +DPTL+FTN+GM FK+IF G P Sbjct: 12 TSKLVRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQ 71 Query: 59 -QAVTTVQK--CVRAGGKHN------------------DLDNVGRTNRHHTFFEMLGNFS 97 ++ QK C+RAGGKHN DLD+VG+ + HHTFFEMLGN+S Sbjct: 72 LKSAVNSQKMQCIRAGGKHNVGWHPVQAGQVFANICEQDLDDVGKDSYHHTFFEMLGNWS 131 Query: 98 FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSAD 149 FG YFK+ AIQ +W+LLT+ + LD RLY+T ++ D EA LW K G+ D Sbjct: 132 FGDYFKKEAIQYSWELLTQVYGLDPGRLYVTYFEGNKEGGLQPDLEAKALW-KAVGVPED 190 Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209 I+ DNFW M + GPCGPCSEI +D+ +++ +EIWN VF+Q+ Sbjct: 191 HILPGNMKDNFWEMGDQGPCGPCSEIHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYN 249 Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------T 260 ++N LP +DTGMG ER+ +VLQ+K++NYD D+F + Q + + Sbjct: 250 RENDGSLRSLPNKHVDTGMGFERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRF 309 Query: 261 GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE- 319 G +RV+ DH+R+ F I+DG++P NEGRGYV+RR++RR YAR E Sbjct: 310 GTDDSDGIDTAYRVVADHVRTLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEI 369 Query: 320 -PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHL 376 ++P + ++G +PEL Q + + E L E+ F KTLDRG + + Sbjct: 370 GSFFSKIVPTVVEQLGDMFPELKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKT 429 Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436 D L+G ++LYDT G P+D+ + + RG + ++ EE R +A+ S G Sbjct: 430 AGDHKLHGADVWRLYDTFGFPVDLTRIMAEERG-----LEIDDRQFEEARHKAKEASKGQ 484 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 TT + + + K K + V++ +KAI Sbjct: 485 KKTTTGSVKLDVHDLG--------------KLEKMNGVPKTDDSAKFEIGNVTAQIKAIY 530 Query: 497 QQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553 + +++ ++ D+T FYAE GGQ DTG + DG ++ G Sbjct: 531 HGKTFHSSTQNLDDSEQIGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYAGY 590 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 +H ++ G + + +++ D R + NH+ TH+L+ AL +LG + Q GS ++ Sbjct: 591 VLHTGYMKYGSFKVDDTVICEYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVS 650 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKY 672 + LRFD +H P+T EL IED I + L + +G A+ G Y Sbjct: 651 AEKLRFDFSHKSPVTDVELVKIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETY 710 Query: 673 NDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 D VRVVSV S CGGTHV TG+I L I+ ES I GIR Sbjct: 711 PDPVRVVSVGAELDEILKNVEDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIR 770 Query: 722 RIEAITGQRA-------------RSHLM------GQDEKLKSLASFLKVSQGNVVGRV-- 760 RI A+TG+ A +HL +++ K + L + V + Sbjct: 771 RIIAVTGEDAHEVQRLAEEFEKRLNHLEAMPSGSAKEQNAKQIQVELNQLSISAVQKSRF 830 Query: 761 --------EEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKS 811 ++I +E + Q + +K+ ++ + ++ + ++K + Sbjct: 831 RERFTQINKKIIDEQKAQQKLESKKAVESITSYFAAPENANKSWLIAKLPISANAKAVSE 890 Query: 812 VMDALQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869 + ++ K+ + +L ++ + + V + + D +A + + ++ +GG GG Sbjct: 891 CLTYVKTKLADKMVYVLASSLEDGRVAHGCYVPKAISDQGASASEWSSAVSRAVGGKAGG 950 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 P G N K D A+ + +L K Sbjct: 951 KGPTS-IGNGINPEKVDDAVDLASEYLSK 978 >gi|261337332|ref|ZP_05965216.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093] gi|270277705|gb|EFA23559.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093] Length = 897 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 316/929 (34%), Positives = 481/929 (51%), Gaps = 69/929 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I +L +F++ GH ++PS+SLI N PT +FT +GMVPF G++ P + Sbjct: 1 MRTAEIAKRYLNYFEQQGHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSHRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 + QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A+DLLT Sbjct: 60 ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTMPQDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ +L++T + +D+EA LW+ G+ + I + DNFW+ GP GPCSEI+ Sbjct: 116 GLGFDKDKLWMTTFTDDDEARALWRNE-GVDPEHIQILGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G G G + RYIEIW+LVF F N + + L +IDTG GL Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENFMVDNVKSKTDLHIVGELAHKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A E++TG+KY + + RV+ DH+RS+ +++D Sbjct: 234 ERVAYLLQGKQNIYETDEVYPVIEACEKITGIKYGDDKDADVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LGY +P+M LLP M YPEL + Sbjct: 294 GVRPSNAGRGYVLRRLIRRTVEAMRVLGYQDPVMPQLLPVSEAAMEPNYPELAATFKDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIM 401 E E++ F +TL G+ + D + ++ ++ GD AF+L+DT+G P+++ Sbjct: 354 EAAYGEEDAFRRTLTNGIEIFDMAVKKAKDEDTDSTEPAVITGDTAFQLHDTYGFPIELT 413 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGY 460 ++ +G+ +D F + + EQ+SRAR +L + K+ F GY Sbjct: 414 LEMAAEQGVK-VDEAKFRELMAEQKSRARQDALKKRHNVDLSEYDDFKKTLESPIVFEGY 472 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTP 519 + S V I+++GE V + VEV+ D TP Sbjct: 473 TEVSTR-----------------------SRVIGIMKEGEGSVPAVTAPATVEVILDHTP 509 Query: 520 FYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAEAGGQL D G I D L++ DVQK + + VH + G L + +ID + Sbjct: 510 FYAEAGGQLADEGTIIADDGAVLEVDDVQKPIKDLIVHQCRLVEGTLVVGADVTASIDIE 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R ++ H+ATH++H AL LG H +Q GS P+ LRFD S + + S+E Sbjct: 570 RRGAIARAHTATHIVHKALREELGPHATQRGSEDAPNRLRFDFQWSSAPSKDLMNSVEAR 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN+ + NL V T+ M +DAIA GA L G KY D VRVV++ S LCGGTH Sbjct: 630 VNERLRDNLRVSTQEMKFDDAIALGAMHLFGEKYGDIVRVVTIG---DDGWSRELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V G+I + I+SE+SI +G+RR++A+ GQ A + + L+ L + Sbjct: 687 VDYAGKIGQINIMSEASIGSGVRRVDALVGQSAYDFSAREHALVSQLSDTLNARPDELAD 746 Query: 759 RVEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISE--VDSKELKS 811 R+ + + ++ + + +L L V DL + D ++ L+ Sbjct: 747 RINTLLGKLKESDRRLSAMYESQLSLMVPDLVQQTKQANDTVLVAVKNVGHFGSFDSLRK 806 Query: 812 VMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 + ++ ++ + ++ L G++ + K + + E + A L +AK LGGGG Sbjct: 807 TVMDVRNRLGADKPVVVALAGLTDDDKPMIAVATNEAAREQGIKAGALVSAAAKTLGGGG 866 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+P AQ GG + K D A+A + + + Sbjct: 867 -GGKPDFAQGGGSDAPKIDDALANLKAQV 894 >gi|212541448|ref|XP_002150879.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224] gi|210068178|gb|EEA22270.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224] Length = 1000 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 296/969 (30%), Positives = 461/969 (47%), Gaps = 95/969 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R F+++F++ GH +PSSS++P +DPTL+F N+GM +K+IF G P Sbjct: 51 TAERVRNEFIDYFKERGHTFVPSSSVVPVSDPTLLFANAGMNQYKSIFLGTVDPQSDFAH 110 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK AI +W+LLTK Sbjct: 111 LKRAVNSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKNEAITYSWELLTKV 170 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F LD RLY+T ++ D EA +W+K G+ D I+ DNFW M + GPC Sbjct: 171 FGLDPSRLYVTYFEGDAQGGLEPDLEAKDIWRK-VGVPEDHILPGNMKDNFWEMGDQGPC 229 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 230 GPCSEVHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 288 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L + +++ G + +RV+ DH+R Sbjct: 289 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAREYQGRFGAEDADGVDTAYRVVADHVR 348 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +P Sbjct: 349 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVNQMGGMFP 408 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396 E+ + + + E L E+ F KTLDRG + + L+G ++LYDT G Sbjct: 409 EIKEKQDEVMEALNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 468 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL+ ID F + R +A+ S G E + + + Sbjct: 469 PVDLTQIMAEERGLS-IDEAEFEE----ARLKAKEASKGQKKAAAETVKLDVHDLG---- 519 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513 K + + S+VKAI ++ G+++ V Sbjct: 520 ----------KLDNMHEVPKTDDSSKFDSPKIESVVKAIYYSKSFIQTTADVPEGEQIGV 569 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG +G + G +H ++ G L S+ Sbjct: 570 ILDRTNFYAEQGGQENDTGAIYINGKAELEVGDVQSYGGYVLHTGFIKYGSLAVGDSVTC 629 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D + R+ + NH+ TH+L+ AL +LG ++Q GS + + LRFD +H ++ EL Sbjct: 630 EFDDRRRQPIRNNHTGTHILNFALREVLGDGINQKGSLVAAEKLRFDFSHKAGVSDKELD 689 Query: 634 SIEDNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681 IE + I QN + SG A+ G Y D VR + V Sbjct: 690 QIERKSTEYIRQNCGVYSKEVPLATAREISGVRAVFGETYPDPVRVVSVGVEVEEILKDV 749 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH------L 735 + S CGGTHVS +GEI L I+ ES I GIRRI A+TG A Sbjct: 750 KDPRWNDISIEFCGGTHVSKSGEIRELVILEESGIAKGIRRIIAVTGDEALQAQLTAVEF 809 Query: 736 MGQDEKLK----------------------SLASFLKVSQGNVVGRV-EEIWEEYRKLQL 772 + EKL+ S+++ K ++ R+ +++ ++ + Q Sbjct: 810 EKRLEKLRTMEHGAAKETEMKQVQLELNQLSISAVQKAKFRDLFARINKQVLDDQKAQQK 869 Query: 773 IHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + K+ L + F++ + + +SK + ++ ++ K+ + Sbjct: 870 VELKKAQDLIKAYFDAEENKGRSTFVAKLPATSNSKVVSESINFIKSKMADKTVYFFAPD 929 Query: 832 -KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K + V++ D + A + + +GG GG P A G N +K D+ + Sbjct: 930 PSGNKVAHGCHVSKAASDLGLSPSGWANVVSGAVGGKAGGKAPT-AIGNGTNPDKVDEGV 988 Query: 890 AGVASFLKK 898 A +L+K Sbjct: 989 ALATEYLEK 997 >gi|313837754|gb|EFS75468.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA2] gi|314927365|gb|EFS91196.1| alanyl-tRNA synthetase [Propionibacterium acnes HL044PA1] gi|314972691|gb|EFT16788.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA3] gi|328907450|gb|EGG27216.1| alanine--tRNA ligase [Propionibacterium sp. P08] Length = 892 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 305/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + I F++FF GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ Sbjct: 1 MRTAEIGQRFVDFFAGKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T++QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK Sbjct: 60 TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKSEAIQYAWELVTKPADQG 115 Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 D +++TV Y E D EA + W+ +G+ I + DN+W M G Sbjct: 116 GLGFDPSSIWVTVLGPGFHPDYPEGDIEAREAWRA-AGVPDGHIQGRSLKDNYWHMGVPG 174 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222 P GPCSEI+ D+G G G + +RY+EIWNLVF + + P Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233 Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279 +IDTG GLER+A +LQ N Y+ D +I + +++G +Y ++ + RV+ DH+ Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIAKASEMSGKRYGANHDDDIRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P+ Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 ++ + +E+E F +TL G +LD + + + + L+G+ AF+L+DT+G P Sbjct: 354 VLTEWDRVISAATAEEETFRRTLSAGTAMLDAAVIDTKVSGSKTLSGEKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D F + EQR+RA+A S T+ ++ G T F Sbjct: 414 IDLTLEMAAEQGLE-VDRDKFTALMAEQRARAKADSKTKKGLLTDPEAYAQIRALGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L V++ V I+ G V A G VEVV + Sbjct: 473 LGYTDL-----------------------TVNTTVTGIIANGTSVTAAGPGSVVEVVLAE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D+G +G L++ DVQ+ G+ V H + G L + ++ Sbjct: 510 TPFYAEMGGQDSDSGIIRANGFDLEVLDVQRPVPGLIV-HKVHLDGDLAVGDQVTAVVNP 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATH++H AL I+G +Q GS P LRFD + +K ++ + IE+ Sbjct: 569 TTRFGACQAHTATHVIHAALREIVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I + V M EDA A GA A+ G KY VRVV + G S LCGGT Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERTLVNELTGILKVQPDQLA 744 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812 RV ++ + + + A + + + +F++ + V +L+++ Sbjct: 745 DRVSKLVTDLKDAERKLAAARTRELMSQVDDIVAGATSAGSFDFIAAKVPGVVGNDLRTL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L + +GG G GG Sbjct: 805 ASEVRGRVKDRPAVVTLIGGTDDKPAMIVAATESARAAGAKAGALIKAGIARIGGRG-GG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 R MAQ G + D A+ V + L Sbjct: 864 RDDMAQGAGSDSAGIDAALRAVDTEL 889 >gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa] gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa] Length = 973 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 285/900 (31%), Positives = 421/900 (46%), Gaps = 92/900 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 + +R TF++FF++ H SS ++P NDPTL+F N+GM FK IF G P Sbjct: 66 ANRVRDTFIKFFEEKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 125 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + Sbjct: 126 SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 185 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L R+Y T + DE EA +W + L +++ DNFW M +TGPCG Sbjct: 186 KLPADRIYATYFGGDEKAGLAPDNEARDIWLQF--LPPGRVLPFGCKDNFWEMGDTGPCG 243 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PC+EI +D+ + + +EIWNLVF+QF +++ LP +DTGMG Sbjct: 244 PCTEIHYDRVGN-RNAAMLVNNDDPTCLEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGF 302 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281 ER+ +VLQ K +NYD D+F + A +Q TG + + +RV+ DH+R+ Sbjct: 303 ERLTSVLQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDVDGVDMAYRVVADHIRT 362 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 SF IADG P NEGR YVLRRI+RRA+ Y L E L+ + M +PEL Sbjct: 363 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNVVVKVMSDVFPEL 422 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + I ET+ +E+ FGKTL +G+ + + L G Sbjct: 423 KRNEEHIRETIAAEEASFGKTLLKGIEKFKKAAQEVEGKVLSGQARCVCLV---GYIWLP 479 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ RGL +D+ FN A++E R R+R G Sbjct: 480 IRFDSEERGLR-VDVEGFNNAMDEARERSRNAQNKQAGGAIVM----------------- 521 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D S K+ S++KAI E +E A + +V +V + T F Sbjct: 522 DADATSALHKKGVSATDDSFKFICFEDHESVIKAIYNGSEFLESAAAANEVGIVLESTSF 581 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEMSLVLTIDYQN 579 YAE GGQ+ DTG G Q+ +VQ I G + +DY Sbjct: 582 YAEQGGQIFDTGVLEGPFGSFQVCNVQIFGGFIVHIGSLTGVSGRFSVGEKVTCKVDYDR 641 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KP+ L+ IE V Sbjct: 642 RKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPELLRKIESIV 701 Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687 N I L V + +A +G A+ G Y D VRVVS+ E+ Sbjct: 702 NGQIKDELGVFAKEATLAEAKQINGLRAVFGEVYPDPVRVVSIGRKVEDLLANPENEEWL 761 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S+ LCGGTH+++T E ++SE I GIRRI A+T A + + + Sbjct: 762 SISAELCGGTHITNTREAKAFALLSEEGIAKGIRRITAVTTDGAFKAMELAHSLEQEVDE 821 Query: 748 FLK------------------------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 K + ++ ++ + + RK Q A+ +Q V Sbjct: 822 ASKADGSLLEKKVASLKTRVDSALIPAAKKADIRAKISVLQNKVRKAQKKIAEENMQKAV 881 Query: 784 E-DLSCHKIADVNF----MSHIISEVDSKELKSVMDAL---QKKIQSGIIMLVGISKEKK 835 E ++A + +SH+ +D+ ++ + + + K G+ + + K Sbjct: 882 EVAAEMAEVASSDGKAFCISHVDVGLDAAAVREAVLKVLERKHKQGCGVCWCAREAGQGK 941 >gi|328858383|gb|EGG07496.1| hypothetical protein MELLADRAFT_48072 [Melampsora larici-populina 98AG31] Length = 966 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 314/968 (32%), Positives = 483/968 (49%), Gaps = 96/968 (9%) Query: 4 VSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 +R TF+ +FQ+ H+ +PSSS+ P +DPTL+FTN+GM +K+IF G P Sbjct: 18 AKKVRKTFINYFQEKYQHQFVPSSSVCPLDDPTLLFTNAGMNQYKSIFLGTIDPSNPLSK 77 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +++AW+LLT+ Sbjct: 78 IKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEDGLKMAWELLTEL 137 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T ++ DE E+ ++W ++ G+ D I+ DNFW M TGPC Sbjct: 138 YGLPKDRLYVTYFEGDEKQGLEPDLESKRIWLEL-GVQEDHILPGNAKDNFWEMGATGPC 196 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ G +++ IEIWN VF+++ +++ LP +DTGMG Sbjct: 197 GPCSEIHYDRVGGRNAGS-LVNQDDPLVIEIWNNVFIEYNRESDGSLKELPSKHVDTGMG 255 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280 ER+ ++LQ+K +NYD D+F+ + + +Q+T G++ + +RV+ DH+R Sbjct: 256 FERLVSILQDKKSNYDTDIFRPIFEKIQQLTGARPYEGKLGIEDQDGIDTAYRVVADHIR 315 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338 + +F I+DG +P N GRGYVLRRI+RR Y R L+P L +MG +P Sbjct: 316 TLTFAISDGGVPNNVGRGYVLRRILRRGARYIRKKFNVPIGTFFSKLMPTLIEQMGDEFP 375 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGL 396 E+ + +L + E L E++ F TLDRG + + + ++L+G +KLYDT G Sbjct: 376 EIEKRRLEVIEILNEEEDSFSLTLDRGEKIFEKYCNRVKKNNGKVLDGKEVWKLYDTFGF 435 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + G GID F A E + ++ + E S+ + Sbjct: 436 PIDLTLLMAEEAG-IGIDQDGFEIAQSESKELSKGGKKKIVGAGVELDVHSIAVLESNS- 493 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513 +++ VKAI Q GE +E SG+ V Sbjct: 494 ----------------SVPKTDDSSKFSLTTINATVKAIFQAGEFYSSSKELKSGEPFGV 537 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+T FYAE GGQ DTG I +G + + + G +H + G ++ E + Sbjct: 538 ILDKTNFYAEQGGQENDTGTLIIEGEMIFDVEDVQVFNGYVLHIGNLSEGEIKKEDLVQS 597 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 + D R+ + NH+ TH+L++AL LG H+ Q GS ++ + RFD +H + + ++EL+ Sbjct: 598 SFDELRRKPIKNNHTGTHILNYALRETLGDHIDQKGSLVSSNKFRFDFSHKQQVKASELE 657 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-------- 684 IE ND I +N V ++ M +A G A+ G +Y D VRVV + E Sbjct: 658 QIEKICNDWILKNHSVYSKEMKLSEAEKIPGLRAVFGERYPDPVRVVVIGPEPIELDADQ 717 Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH------ 734 +S CGGTHV T EI L +V ES I GIRRI A+TG+ A++ Sbjct: 718 LNESKWLNYSVEFCGGTHVKKTNEIKELILVEESGIAKGIRRIVAVTGEEAKTVIELANE 777 Query: 735 ------------LMGQDEKLK---------SLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +++ LK ++ K G V+ E KLQ Sbjct: 778 LNLKLDKIIELPIKEREQGLKGFSVELAGIEISVIEKSKIKEKFGVVQRELIELGKLQTK 837 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK- 832 ++K V+D + + + ++K L S L+ + ++G L I+K Sbjct: 838 ADEKKATQLVKDWIEVHPNERVMIDVLDVGSNTKCLMSACGILKNEGKAG--YLFSINKS 895 Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K + +T++++ D +NA KVLGG G GG+ AQ G NK ++AI Sbjct: 896 DGKIVHVNSLTKEMVQDDWNAKIWMDEIIKVLGGKG-GGKGDTAQGVGDQINKVNEAIEI 954 Query: 892 VAS-FLKK 898 FL K Sbjct: 955 AKKSFLNK 962 >gi|302923886|ref|XP_003053770.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734711|gb|EEU48057.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 956 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 309/966 (31%), Positives = 469/966 (48%), Gaps = 94/966 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVY-- 58 + +R TFLE+F++ GH ++PSSS++P NDPTL+FTN+GM FK IF G P+ Sbjct: 10 AARVRQTFLEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTDPMAGL 69 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +A QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A+Q +W+LLTK + Sbjct: 70 KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVQYSWELLTKVY 129 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY+T ++ DE EA LW G+ D I+ DNFW M + GPCG Sbjct: 130 GLDPARLYVTYFEGDEKLKLEPDLEAKDLWLS-VGVPEDHILPGNMKDNFWEMGDQGPCG 188 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ + + +EIWN VFMQ+++Q LP IDTGMG Sbjct: 189 PCSEIHYDKI-GGRNAANLVNMDDPMVVEIWNNVFMQYDRQKDGSLKSLPAKHIDTGMGY 247 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRS 281 ER+ + LQ +NY D F L + E+V G +RV+ DH+R+ Sbjct: 248 ERLVSALQNTVSNYATDCFTPLFKKIEEVTGARPYSDKYGKDDADGIDTAYRVVADHIRT 307 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 SF IADG +P N+GRGYV+RR++RR + YAR + +LPAL +MG +PE Sbjct: 308 LSFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQFPE 367 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397 L++ + I+E L E+ F +TLDRG + + KD + L GDV ++LYDT G P Sbjct: 368 LVKKQQDIKEILDEEEVAFARTLDRGEAQFEKYAAQAVKDGSKKLEGDVVWRLYDTFGFP 427 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + R + + +E R +AR S + F Sbjct: 428 VDLTRLMAEERS-----LEIDDAEVEAARIKAREASKAVKESVQ--------------TF 468 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVV 514 ++ + ++ ++ + L V+ I ++ + + ++ Sbjct: 469 SKLNVHQIAELEQQLKVERTNDDAKFLQGDSKGKVQLIYDGKTFLKSTKDIPEKTALGLL 528 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D T FYAE+GGQ+ DTG + D + + G +H +E G L + ++ Sbjct: 529 LDNTNFYAESGGQVADTGRIVIDDVAEFNVLDVQNFGGYILHSGYIEYGALNSGDEVICE 588 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D R + NH+ TH+L+H+L +LG + Q GS + + LRFD +H + ELK Sbjct: 589 YDELRRSPIRNNHTGTHILNHSLREVLGDEIHQKGSLVDNEKLRFDFSHKTGVKIEELKK 648 Query: 635 IEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682 IED N+ I + P+ ++ + G A+ G Y + VRVVS+ Sbjct: 649 IEDRSNEYIRRGSPIFSKDVDLDLARQIEGCRAVFGETYPNPVRVVSIGKDIDEMLADPK 708 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS--------- 733 + +S CGGTHV TG I L ++ ES I GIRRI A TG+ A Sbjct: 709 NVEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREAAEFA 768 Query: 734 ---------HLMGQDEKLKSLASFLK------VSQGNVVGRVEEI----WEEYRKLQLIH 774 ++ ++K+++ L +++ + R ++I E +K Q Sbjct: 769 KKLDALEKLDFAEKESQVKAVSVELSQLTISTLTKDELNKRFQKISTAVVAEQKKRQKAE 828 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 AK L ++ ++ A F+ + ++K + V+ Q K + + L G SKE+ Sbjct: 829 AKTALDTVLKHFKANEDAKW-FVGRLPIGANAKAVGEVVKHFQGKDKEKSVYLFGGSKEE 887 Query: 835 KASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 A V + V T A A ++V+GG GG P Q G D + Sbjct: 888 GAVVHGVYVGTHLSSQGVTAEQWAASVSEVIGGRSGGKEPTR-QGQGTKPENLDDGVETA 946 Query: 893 ASFLKK 898 +L + Sbjct: 947 TKWLSE 952 >gi|219124287|ref|XP_002182439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406400|gb|EEC46340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 955 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 292/954 (30%), Positives = 450/954 (47%), Gaps = 79/954 (8%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 +R TF +F +++GH PSS +P +DPTL+FTN+GM +K +F G P Sbjct: 18 EKVRDTFKNYFVEQHGHVFWPSSPCVPVDDPTLLFTNAGMNQYKPLFLGTCDPNLEMSKL 77 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI +AW LT F Sbjct: 78 TRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKAGAIDMAWQCLTVTF 137 Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 LD RLY T + DEEA +LW + L D+++ DNFW M TGPCGPC Sbjct: 138 GLDPERLYATYFAGDELTPVDEEARQLWLRY--LPDDRVLPFDARDNFWEMGATGPCGPC 195 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +EI +D+ + + +EIWN+VF+Q+ ++ LP +DTGMG ER Sbjct: 196 TEIHYDRI-GGRDASKLVNADLPDVMEIWNVVFIQYNREADGSLRPLPAQHVDTGMGFER 254 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSS 283 + ++LQ +NYD D+F L A + +T G + + +RV+ DH+R+ Sbjct: 255 LTSILQNVDSNYDTDIFIPLFTAIQNITGARPYAKKVGKEDPEYIDMAYRVVADHIRTLC 314 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F I DG +P+N+GRGYVLRR++RRA+ Y R LG L+PA MGSA+PE+++ Sbjct: 315 FAITDGAVPSNDGRGYVLRRVLRRAVRYGRQNLGAELGFFAKLVPAFVDVMGSAFPEVVE 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 + + ++ E+E F +TLD+GL + + +G D+I +G A LY + G P+D+ + Sbjct: 375 KQEYVTGIIQEEEESFSRTLDKGLQKFNELAEKVGADQIFSGADAHFLYTSMGFPVDLTE 434 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 + +G+ ++ F ++E+ ++A L +G + K + E+ + +G ++ Sbjct: 435 LMAEEKGMT-LNKEEFEAKMQEEHDISQAAHLAKMAGGSGKDMRLVAEQ--TSYLVGQNI 491 Query: 463 LRGSKFMKE-------DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 K D V + T + V +I + V +V Sbjct: 492 SATDDAAKYVWHEELADCVVKACFIGRNETEDMIGFVGSISPESSAV---------GIVL 542 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D++ FYAEAGGQ+ D G + + +H V G L ++ ++ Sbjct: 543 DKSSFYAEAGGQVYDVGTLTSSTGAVVKITNVQAYGQFVLHLGEVASGTLSVGDTVKCSV 602 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGS------------HVSQNGSCITPDGLRFDVTH 623 DY R ++ NH+ TH+L+HAL +L V Q GS + LRFD + Sbjct: 603 DYVRRAPIASNHTMTHVLNHALREVLIKRPEKESGKTSTLTVDQKGSLVDETKLRFDFSW 662 Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE 682 S +T +L +E D I +PV + DA S A+ G KY D VRVV+V Sbjct: 663 SGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVVAVS 722 Query: 683 YE------------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 +S CGGTH+++T E +++E I GIRRI AIT Sbjct: 723 DHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITAITTGE 782 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLIHAKRKLQLNVED 785 A+ + +E L + V ++ V+++ E L + + + +L + Sbjct: 783 AKKAIALANEFESKLTAAEVVQGDDLESTVKQLSAELDGLDIAAVKKMQFREQLATMTKQ 842 Query: 786 LSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +K + V+ K KSVM A K+++ ++LV E ++I Sbjct: 843 VLAYKKQKLAGGSKVVMRFDFGVEGKVAKSVMTAFGKQVKDKALLLVTADPEADRFMVIA 902 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 + N +A GGG+P AQ D + F Sbjct: 903 GAPKAMKDLNCKAWI-EAATDGLDAKGGGKPDSAQYQVSGVEAVDTVLEKARKF 955 >gi|326434145|gb|EGD79715.1| alanyl-tRNA synthetase [Salpingoeca sp. ATCC 50818] Length = 955 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 300/959 (31%), Positives = 460/959 (47%), Gaps = 79/959 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 +R F+ +F++ GH+ PSSS IP NDPTL+F N+GM +K F G + Sbjct: 9 TADKVRGKFISYFEERGHKFWPSSSTIPFNDPTLLFANAGMNQYKAKFLGTDSKDTDLGK 68 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG Y+KE AI +WDLLT Sbjct: 69 LTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYWKEEAIDFSWDLLTNV 128 Query: 118 FDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 F LD RLYIT ++ DEE LW K + ++I+ DNFW M ETGPCGP Sbjct: 129 FQLDPNRLYITYFEGDSVVPADEETRSLWMK--HVPPERILPFDRKDNFWEMGETGPCGP 186 Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 C+EI +D+ + + +EIWNLVFMQ+ + LP +DTGMGLE Sbjct: 187 CTEIHYDRI-GGRDASHLVNMDDPDVLEIWNLVFMQYNNEGNGVLKTLPAQHVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRSS 282 R+ +VLQ KT+NYD DLF + A ++ G + +RV+ DH+R+ Sbjct: 246 RILSVLQNKTSNYDTDLFLPIFAAIKEKCGCREYTGKVNEADTDMVDTAYRVVADHIRTL 305 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341 IADG P +GRGY+LR ++RRA+ + LG E L+P + +G A+PEL Sbjct: 306 CIAIADGGRPDKDGRGYILRLVLRRAIRFCEEYLGAPEYFFASLVPVVVDVLGDAFPELR 365 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + L+ E+ +F +TL RG ++ +G+D +++GD A++L+DT+G P+ + Sbjct: 366 KDPEETIAVLKEEERQFRRTLSRGRRYFKRAVAAVGEDGVIDGDTAWRLWDTYGFPIHLT 425 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + RGL +D+ F A +RA G + +L E Sbjct: 426 IVMAEERGLK-VDMDGFEAAKARAVEISRAGGAA-GETNLDLDVNTLDELKKK------- 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--EAVSGQK---VEVVFD 516 + G+ + + ++ +++ + ++G +V+ + V VV D Sbjct: 477 GVPGTDDAAKYAYTRDENGSYSFSDAEGTVLALLTEEGGLVDRVSVSEDDEELPVGVVLD 536 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG--IFVHHAIVERGILRTEMSLVLT 574 +T FYAE GGQ+ DTG DV + +H A + +G L+ L L Sbjct: 537 KTNFYAEQGGQIYDTGRFESTTGAPLELDVFNVQKRGAYCLHVATLAQGELKVGDKLTLK 596 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D+ RR NH+ATH+L++AL ++LG Q GS + P+ LRFD T K +T +LK Sbjct: 597 FDHDRRRPCMSNHTATHVLNYALRSVLG-EADQKGSLVEPERLRFDFTAKKGMTPEQLKQ 655 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGG------ 687 E+ VN I+ N V + A +G A+ G Y D VRV+SV Sbjct: 656 TEEVVNKIVNANYTVYDKDTPLAQARAINGLRAMFGETYPDPVRVLSVGASIDDMVADPA 715 Query: 688 -----VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 +S CGGTHV ++G+I I+SE ++ GIRRI A+TGQ A D Sbjct: 716 ASYAVDYSVEFCGGTHVKNSGDIGPFTILSEEAVAKGIRRIVAVTGQEALKAHRAADAYE 775 Query: 743 KSLASFLKVSQGNVVG-----------RVEEIWEEYRKLQLI-----HAKRKLQLNVEDL 786 + + L + + R EE+ + + A+RK + Sbjct: 776 RRIRDDLDAKEVTSLDAELGTATIPAVRKEEMRARLKAMSKKHAEARLAERKAKAAHAKT 835 Query: 787 SCHKIADVN---FMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +++ + F+ + ++K + + L+KK+ M G ++E + V Sbjct: 836 RANELIEEKPEGFVVETLDVGANAKAIGEALKLLKKKLPDVAFMFFG-AEEGAVAYTCQV 894 Query: 843 TEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM-AQSGGPNGNKADQAIAGVASFLKK 898 + ++ A + + +VLGG G G + AQ + K A +++++ Sbjct: 895 PKAMVDEKGIKASEWIKRVNEVLGGRG--GGRDLVAQGTADDSTKLTLAQEAARAYIEE 951 >gi|49119610|gb|AAH73734.1| LOC443692 protein [Xenopus laevis] Length = 1005 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 281/963 (29%), Positives = 447/963 (46%), Gaps = 79/963 (8%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + ++IR FL +F +K+GH +PSSS+ P DP+L+F N+GM FK IF G P Sbjct: 53 SAAAIRRAFLRYFQEKHGHRHVPSSSVRPRGDPSLLFVNAGMNQFKPIFLGTADPRSDMA 112 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A +AW LLT+ Sbjct: 113 QYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACSMAWQLLTQ 172 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY+T + D+E ++W + G+ +++ +NFW M ETGP Sbjct: 173 GYGIPEDRLYVTYFGGEPTLGLSADQETQEIWLSL-GVPPARLLPFGLKENFWEMGETGP 231 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D +++ +EIWNLVFMQ+ +++ + +LP+ +DTGM Sbjct: 232 CGPCTEIHYDHV-GGRNAASLVNQDSPDVVEIWNLVFMQYNRESDRSLRLLPQQHVDTGM 290 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279 GLER+ TVLQ K +NYD DLF +++A + + G + + + +RV+ DH+ Sbjct: 291 GLERLVTVLQGKRSNYDTDLFSPILEAIMKGSRAPQYQGLMGKEDTEHTDMAYRVVADHI 350 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ IADG+ P G VLRRI+RRA+ ++ L + L+P++ +G A+P Sbjct: 351 RTLCVCIADGVYPGMSGAELVLRRILRRAVRFSSEILRAPPLFLSSLVPSVVHVLGEAFP 410 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + K I L +E F +L +G ++D L + + VA+ L+ G PL Sbjct: 411 ELEREKSQIMNILNENEEAFLISLQQGRRIIDRTLQQQEEPQTFPVGVAWSLHRNLGFPL 470 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D++ +L RG++ + +EE + R E S+ E Sbjct: 471 DLIGLMLEERGISLDKAAMDHLTVEEAERKMRNQQADEAQTGLELDVHSMAELQR----- 525 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + + V + + + E GQ+ V+ DQT Sbjct: 526 ---RGVPCTNDSPKYNYTLAADGKYVFGPCRATVLMLYKDHSLHSEIDKGQRCGVILDQT 582 Query: 519 PFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ D G + D + G ++ H + +LR LVL +D Sbjct: 583 CFYAEQGGQSCDQGYFVRKDQQEALFPVESVQVAGGYMLHEVTTPEVLRVGDQLVLYLDE 642 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 +R H+ATHLL++ L +LG + Q GS +T + LRFDV+ + P+ +L+ +E Sbjct: 643 AHRLACMQKHTATHLLNYTLHQVLGENTVQRGSHVTAERLRFDVSVTAPVHVEQLQEVEQ 702 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----------EYEDGG 687 + D+I+Q+ + T ++ A + Y + VRVVSV + Sbjct: 703 VLQDLISQDEEIHTALVPLTAAKCVRGLRTVDEAYPNPVRVVSVGIPVDVALKPGSQAAL 762 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK---S 744 S LC GTH+ +TG I + IVSE + GI R+ AITG+ A+ E ++ S Sbjct: 763 QTSVELCCGTHLLTTGAIQDVVIVSERPLAKGITRLIAITGEEAKQARETGHELVRAVES 822 Query: 745 LASFLKVSQGNVVGRV-----------------------EEIWEEYRKLQL------IHA 775 + +K ++ +E+ + + LQ Sbjct: 823 ITERMKTKPLSLNEGFHLSKEVGILTDSVDSATMPQWQRKELQAKLKALQRNANTNIRKL 882 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + K + K + + + +S L V++ + +ML +K Sbjct: 883 EVKQAAVIAQGLLKKHSRCSLIIDKVSVESLSMLVKVVNQVCDGSPGASVMLFSKQDSEK 942 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + +A + A + GG GG +A+ G + D+ + +F Sbjct: 943 VFCACQVPKGSGSELSAAEWATTVCSEM-GGNAGGSDVVAKGTGT-IDSLDRVLQTAQNF 1000 Query: 896 LKK 898 +K Sbjct: 1001 AQK 1003 >gi|21910594|ref|NP_664862.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315] gi|21904795|gb|AAM79665.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315] Length = 825 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 303/871 (34%), Positives = 460/871 (52%), Gaps = 66/871 (7%) Query: 46 FKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105 K F G P +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ Sbjct: 1 MKKYFDGSVIPENPRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDE 56 Query: 106 AIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163 AI+ ++LLT FD + +LY+T Y +D++++ W G+ ++ I DNFW + Sbjct: 57 AIEWGFELLTSPDWFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEI 113 Query: 164 AETGPCGPCSEIFFDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQE 215 GP GP +EIFFD+GE E +RYIEIWN+V QF + E Sbjct: 114 G-AGPSGPDTEIFFDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSE 172 Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRV 274 LP +IDTG GLER+A V+Q N++ DLF +I+ E+++G Y+ + + ++ +V Sbjct: 173 YKELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKV 232 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334 I DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M Sbjct: 233 IADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIME 292 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYD 392 S YPE+++ + IE+ ++ E+E F +T+D G LD +L+ L + + L G FKLYD Sbjct: 293 SYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYD 352 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+++ +++ G ID F A++EQ+ RARA + GS + +L Sbjct: 353 TYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIV 409 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 ++F YD T + S + I+ E E GQ Sbjct: 410 EESRFE-YD-----------------------TYSLESSLSVIIADNERTEAVSEGQ-AL 444 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 +VF QTPFYAE GGQ+ DTG D + +KA H + L + Sbjct: 445 LVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNY 504 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L I+ + R + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ E Sbjct: 505 TLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEE 564 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691 L+ IE VN+ I L + T + E A GA AL G KY VRVV + G +S Sbjct: 565 LRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSV 619 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 LCGGTH++++ EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Sbjct: 620 ELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVKA 679 Query: 752 SQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD 805 Q + +V+ + + R LQ +A+ K + + V F++ + D Sbjct: 680 PQLKDAAAKVQALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVAD 739 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV EK ++ T+D +A ++ + A ++ Sbjct: 740 AGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA- 794 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +K + +A VA + Sbjct: 795 GRGGGKPDMAMAGGSDASKIAELLAAVAEIV 825 >gi|326773292|ref|ZP_08232575.1| alanine--tRNA ligase [Actinomyces viscosus C505] gi|326636522|gb|EGE37425.1| alanine--tRNA ligase [Actinomyces viscosus C505] Length = 903 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 310/936 (33%), Positives = 487/936 (52%), Gaps = 74/936 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L++F N HE+ PS SL+ P+++FT +GMVPF G E+ + Sbjct: 1 MRTSEIRSRWLDYFAANEHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEEAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVG T RH TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T+++ED+ + W + G+ A++I + D WS + GP G C EI Sbjct: 116 GYSLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230 +D+G P G P +G+R++EIWNLVF +F + + L + +IDTG GL Sbjct: 176 YDRGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279 ER+A ++Q+K N Y+ID +I+A+E+++G Y ++ V RV+ DH+ Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKAYGRGSAGPEAGEAYHDDVRMRVVADHV 295 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS+ LI DG+ P N+GRGYVLRR++RRA+ RLLG E M LL M S+YPE Sbjct: 296 RSALMLICDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPE 355 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDT 393 L I E E++ F +TL G +LD ++ K +++G AF+L+DT Sbjct: 356 LETGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGRSGRPLVSGKSAFELHDT 415 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451 +G P+D+ ++ +G +D +F + EQ+ RARA + +G + F EK Sbjct: 416 YGFPIDLTLEMAAEQG-VDVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 G + F+GY + + V I+ G + +V Sbjct: 475 GGGSTFLGYTE-----------------------SSADATVTGILVDGVPQSVVTAPAEV 511 Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 EVV D+TPF+AE GGQL D G + DG +++ DVQ +G+ VH + G + Sbjct: 512 EVVLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEK 571 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ID R ++ H++TH++H AL I+ + +Q GS +P +RFD H + S Sbjct: 572 AFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASD 631 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 ++ IE+ VN+ ++++L V +M+ + A A+GA AL G KY +VRVVS+ GG S Sbjct: 632 QISGIEERVNNRLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKQVRVVSI----GGDWS 687 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LC GTHV STG I + ++ ESSI +G+RRI+A+ G+ A + + + L++ + Sbjct: 688 KELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQAKEHALVSQLSTMVG 747 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV- 804 ++ RVE + + + A + + ++ +V S + V Sbjct: 748 GRPEDLPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVRLGEVRLASADLGTVG 807 Query: 805 DSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 + ++S++ + ++ ++ + + + V+ A L R +A+ Sbjct: 808 SADAVRSLVLDTRSRLGDAEPAVVAVGAVVGSRPVVVVATNAGARDQGIRAGALVRTAAQ 867 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 VLGGGG GG+ +AQ GG N D+A+ VA ++ Sbjct: 868 VLGGGG-GGKDDLAQGGGQNPQALDEALRAVAEQIQ 902 >gi|169603389|ref|XP_001795116.1| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15] gi|160706385|gb|EAT88464.2| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15] Length = 960 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 306/977 (31%), Positives = 461/977 (47%), Gaps = 113/977 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 +R TFL++F+KNGH +PSSS++P +DPTL+FTN+GM +K+IF G P Sbjct: 12 AKKVRQTFLDYFKKNGHSFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFASL 71 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+L+TK + Sbjct: 72 KRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELMTKVY 131 Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 +D RLY+T ++ D EA +LWK +G+ D I+ DNFW M + GPCGPC Sbjct: 132 GIDPNRLYVTYFEGADGLEPDLEAKELWKS-AGVPEDHILPGDMKDNFWEMGDQGPCGPC 190 Query: 173 SEIFFDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SE+ +D E + G +++ IEIWN VFMQ+ ++ + LP IDTGM Sbjct: 191 SEVHYDLREPVDGKYRNASDLVNKDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGM 250 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHL 279 G ER+ +VLQ+K +NYD D+F L + + + G + +RV+ DH Sbjct: 251 GFERLVSVLQKKMSNYDTDVFTPLFKRIQDITGARPYNGKFGKEDPDGIDTAYRVVADHT 310 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAY 337 R SF IADG +P N GRGYV+RR++RR YAR E ++P L +MG + Sbjct: 311 RMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARNYFGVEIGNFFSKIIPTLVEQMGDMF 370 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + I E L E++ F K+LDRG + ++ K L GD ++LYDT+G Sbjct: 371 PEIKKKQQDIIEILDEEEKAFAKSLDRGETIFKKYVAKAQKAGSNDLPGDDVWRLYDTYG 430 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL D + +AR S G + + F + + Sbjct: 431 FPVDLTKLMAEENGLNINDKEVEEA-----QEKAREASKGDKAAAGVVVKFDVHDL---- 481 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVE 512 + D +++ +KAI + ++ E G++ Sbjct: 482 ----------AALDSMDDVPKTDDSFKYGRENITTTIKAIYHNKKFLKSTSEVPEGEQFG 531 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 V+ D+T FYAE GGQ DTG + DG D + G +H ++ G L+ ++ Sbjct: 532 VLLDKTNFYAEQGGQEYDTGRLLIDGEAEISVDNVQVYAGYVLHTGYLKYGELKVGSEVI 591 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L++AL LG+ V Q GS + P+ LRFD +H +T AEL Sbjct: 592 AEFDELRRNPIRNNHTGTHVLNYALRETLGNEVDQKGSLVAPEKLRFDFSHKAGLTDAEL 651 Query: 633 KSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682 K +ED +D I QN V + + + G A+ G Y D VRVVSV Sbjct: 652 KKVEDISSDYIRQNAEVYAKDVPLAQAKEIRGLRAVFGETYPDPVRVVSVGVPIEDLLAD 711 Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736 E S CGGTHV TG+I L I+ ES I GIRR EA QR + Sbjct: 712 VKNEKWDKLSIEFCGGTHVLKTGDIKELVILEESGIAKGIRRQEAYNVQRIGNEFAERID 771 Query: 737 ---------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 ++ + K L L + + + +I + Q AK + Sbjct: 772 LFGKMKFSPEKEAEAKKLQLELNQLSISAIKKTELRDAFAKIQKSILDEQKAFAKADNKR 831 Query: 782 NVEDLSCHKIADVN-FMSHIIS---EVDSKELKSVMDAL---QKKIQSGIIMLVGIS-KE 833 +++++ + F+ + V+ K + + A+ + ++ + L S +E Sbjct: 832 VLDEVTNFFKDESKTFLVKKVEWSSNVN-KAISEAIKAISGPKSALKDRSLYLFSASPEE 890 Query: 834 KKASVLIVVTED-LLDRFNAVDLARLSAKVLG-----------GGGGGGRPHMAQSGGPN 881 K V E + A ++G A G N Sbjct: 891 GKVVHGCYVAEQHKAAGADGPKWASFVTPIIGGKAGGKPGAPT----------AIGQGTN 940 Query: 882 GNKADQAIAGVASFLKK 898 +K D +A F+++ Sbjct: 941 ADKVDDGVAEATKFIEQ 957 >gi|115432192|gb|ABI97370.1| AlaRS [Bos taurus] Length = 869 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 293/853 (34%), Positives = 429/853 (50%), Gaps = 68/853 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAGEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F++ +R A+ S G G+G + I + + G Sbjct: 424 LTALIAEEKGL-VVDMDGFDE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ + VEEA +GQ+ VV D+T Sbjct: 478 LEATDDSPK----YSYHSDSSGTYVFESAVATVMALRRDRMFVEEASTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVRGGYVLHIGTLYGSLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I PV T + G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772 Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803 SL V +V+ + +Q A L + + + Sbjct: 773 SLCV--------VEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFR-------- 816 Query: 804 VDSKELKSVMDAL 816 + K LK VMD L Sbjct: 817 ENLKSLKKVMDDL 829 >gi|115610688|ref|XP_797369.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Strongylocentrotus purpuratus] gi|115964130|ref|XP_001180526.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Strongylocentrotus purpuratus] Length = 1041 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 290/968 (29%), Positives = 453/968 (46%), Gaps = 87/968 (8%) Query: 4 VSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 S +R FL+ FQ N H +PSSS+IP DPTL+FTN+GM FK+IF G P Sbjct: 78 ASQVRKKFLDHFQGLNDHVFVPSSSVIPYGDPTLLFTNAGMNQFKDIFQGTIHPDMVQNC 137 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 Y+ V QKC+R GGKHNDLD+VG+ HHTFFEMLGN+SFG +FK+ A +A DLLT Sbjct: 138 YRRVVNSQKCIRVGGKHNDLDDVGKDTTHHTFFEMLGNWSFGDFFKKEACTMALDLLTSV 197 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L LY T + DE ++W + G+ D+++ DNFW M GPC Sbjct: 198 YGLPLENLYFTYFKGNSELQLGADEATRQIWLDL-GVPEDRVLPFGMADNFWEMGAVGPC 256 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI FD+ + +EIWNLVFMQF + LPK +DTGMG Sbjct: 257 GPCTEIHFDRHGN-RNASHLVNLGDPDVLEIWNLVFMQFYRNEAGSLHDLPKHHVDTGMG 315 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLR 280 LER+ ++LQ ++YD DLF+ LI+ E+ + K + + +R + DH R Sbjct: 316 LERLVSILQGVPSSYDTDLFQPLIKRLEETCPVRPYQGLLGEKDQDHIDTAYRAVADHAR 375 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + IADG P ++ RGYV++R++RRA+ YA L + L+ + +G+ YPE Sbjct: 376 MLTVAIADGCRPDSQKRGYVIKRVIRRAVRYATEKLQAPPGALGSLVHLVVISLGNTYPE 435 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + I + + +E+E+F TL +G L ++ L +L GD+A+K+YD +G PLD Sbjct: 436 LEEDPVYIADVINNEEEQFLTTLKKGEKYLKKAITELSSQTVLPGDIAWKMYDAYGFPLD 495 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I GL G+DI F ++ E + + I + Sbjct: 496 LTTLIADENGL-GVDIEGFEKSRLESKEITSRGGIKNQQN-LSNIKLETTDISHL----- 548 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++L + + + + A+ VE A SG++ ++ D+T Sbjct: 549 HELSVKDTDDSYKYNYQHHRRGKYTFPRIHAHILALKTPKGFVECAASGEECAIILDRTT 608 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE GGQ D G + + V +V H + + L ++ + Sbjct: 609 FYAEQGGQQWDEGSFVSADDEELMFSVYDVQSYGGYVLHLGTTAETVSIGDHVTLYVNEE 668 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R +L NH+ TH+L+ AL +LG H+ Q GS + PD RFD K I+ +L+ I Sbjct: 669 RREKLMRNHTGTHILNFALRQVLG-HIEQKGSSVAPDRFRFDFNAEKSISDRQLQQISSI 727 Query: 639 VNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG---------- 687 N++I+ +LPV I ++ G + G Y D V VV + ++DG Sbjct: 728 ANNLISNSLPVHQESIPLQKALTIEGLRTMTGETYPDPVTVVCIGHQDGQLNGDMTKLGM 787 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----------RSHLMG 737 S LCGGTHV +TG I L IVSE + G+RR+ +T L Sbjct: 788 ETSLELCGGTHVKNTGHIRRLVIVSEKLVSKGVRRLTVVTSNDVMLADYTSNKFLQRLSQ 847 Query: 738 QDEKLKSLASFLK--------VSQGNVVG-----------------RVEEIWEEYRKLQL 772 + ++ ++++ S ++V RV ++ + +K Sbjct: 848 LETEVYNVSTSNNPEMRDDVIASLESLVEDLEGAHIDLWKKREMNRRVADMQNKLKKADK 907 Query: 773 IHAKRKLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ K ++ + L K ++V + +D+K L V +L+ + S +ML+ Sbjct: 908 LNKKSVIKQVAKRLHEEFREKKSEVCLVGVTGDSIDNKVLLKVQQSLEDEFGSTPLMLLS 967 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 KE KA + V ++L+ R +A + G G G A+ G + ++ Sbjct: 968 TDKE-KAYCICRVPQELVSRGLHASQWMDSVMGEME-GKGFGSETFARGRGLAPSSLEEC 1025 Query: 889 IAGVASFL 896 S++ Sbjct: 1026 AKKARSYV 1033 >gi|302506663|ref|XP_003015288.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371] gi|291178860|gb|EFE34648.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371] Length = 954 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 289/962 (30%), Positives = 454/962 (47%), Gaps = 103/962 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQK---------DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 133 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +W+ G+ D I+ DNFW M + GPCGPCS Sbjct: 134 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 192 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ Sbjct: 193 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 251 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L A + +TG + +RV+ DHLR+ +F Sbjct: 252 VSILQNKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 311 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + Sbjct: 312 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 371 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG + L+G ++LYDT G P+D+ Sbjct: 372 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 431 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D R +A+ S G ++ + ++ Sbjct: 432 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 475 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++++ + + +KAI E+++ + +++ ++ D+ Sbjct: 476 ----TLSTLEKNGVPKTDDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 531 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG + DG + G +H ++ G S++ D Sbjct: 532 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 591 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H I+ ++L+ IE Sbjct: 592 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 651 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 652 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 711 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 712 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERL 771 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780 +D ++KSL L + V + + +I ++ Q K +++ Sbjct: 772 NRFEKMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 831 Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ +S + + + + K + ++ ++ K+ + + K + Sbjct: 832 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADA-SKVA 890 Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 VT DL +A + A + ++ GG GG+ +A G NK D+A+ +L Sbjct: 891 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 949 Query: 897 KK 898 +K Sbjct: 950 EK 951 >gi|296454023|ref|YP_003661166.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum JDM301] gi|296183454|gb|ADH00336.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum JDM301] Length = 871 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 313/905 (34%), Positives = 479/905 (52%), Gaps = 64/905 (7%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PS+SLI N PT +FT +GMVPF G++ P + +T+ QKCVR D+D VG+ Sbjct: 1 MPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSNQKCVRTL----DIDEVGK 55 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137 T RH TFF+MLGNFS G YFKE AI AW+LLT + D +L++T + +DEEA Sbjct: 56 TTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQSEGGYGFDPEKLWVTTFTDDEEAR 115 Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197 +WK G + + DNFW+ GP GPCSEI+ D+G G G + + R+ Sbjct: 116 SIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDRGPEY-GRDGGPAADETRF 173 Query: 198 IEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251 IEIW+LVF +E N + + L + +IDTG GLER+A ++Q K N Y+ D Sbjct: 174 IEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLERLAYLMQGKQNIYETDEVFP 233 Query: 252 LIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 +I+A+E+++G KY + V RV+ DH+RS+ +++DG+ P+N GRGYVLRR++RR + Sbjct: 234 VIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGVRPSNVGRGYVLRRLLRRTV 293 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 R+LG T+P++ LLP M ++YPEL + E E++ F +TL+ G+ +L Sbjct: 294 QAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEAAYGEEDAFRRTLENGIEIL 353 Query: 370 DGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427 D + K D +++G AF L+DT+G P+++ ++ +G+ +D F + + EQ+S Sbjct: 354 DVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQGVK-VDEAKFRELMAEQKS 412 Query: 428 RARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 RARA +L ++ K+ F+GY + Sbjct: 413 RARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM----------------------- 449 Query: 487 GVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQIT 544 + V I+Q+G+ V VEV+ D+TPFYAEAGGQL D G + D L++ Sbjct: 450 SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAVLEVD 509 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 DVQK + + VH + G L + ID R ++ +H+ATH++H AL LG Sbjct: 510 DVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREELGPQ 569 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 +Q GS P+ LRFD SK + + ++E+ VND + NL V T+ M +DAIA GA Sbjct: 570 ATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAIALGA 629 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 L G KY D VRVVS+ S LCGGTHV G+I ++ I+SE+SI +G+RR++ Sbjct: 630 MHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVGKIGMVNILSEASIGSGVRRVD 686 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQL 781 A+ GQ A + + L+ L + RV + + ++ A + +L Sbjct: 687 AVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLAKLKESDRRLASMYESQLAA 746 Query: 782 NVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKKIQSG---IIMLVGISKEK 834 +V L + + V L+ + ++ ++ ++ L G++++ Sbjct: 747 SVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLDVRAQLGEDAPVVVALAGVNEDD 806 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + E A DL R +AKVLGGGG GG+P AQ GG + +K +A+ + Sbjct: 807 KPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGKPDFAQGGGVDASKIGEALEALK 865 Query: 894 SFLKK 898 +K Sbjct: 866 HEAQK 870 >gi|315046056|ref|XP_003172403.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893] gi|311342789|gb|EFR01992.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893] Length = 970 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 288/930 (30%), Positives = 447/930 (48%), Gaps = 93/930 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +W+ G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L A + +TG + N +RV+ DHLR+ +F Sbjct: 261 VSILQNKSSNYDTDVFSPLFAAIQNITGARPYTGNFGAQDVDGIDTAYRVVADHLRTLTF 320 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYMQVEIGSFFSKLVPALVEQMGDMFPEIKR 380 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG + L+G ++LYDT G P+D+ Sbjct: 381 KQNDVMEILDEEEVSFAKTLDRGERQFETYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D R +A+ S G ++ + ++ Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKAASDLLKLTVH----------- 484 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++++ + + +KAI E+++ + +++ ++ D+ Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPADEQIGIILDK 540 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG + DG + G +H ++ G S++ D Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H I+ ++L+ IE Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIES 660 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 661 MSTDYIRQNCAVYSQEVPLSTAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 721 WEAVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERL 780 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780 +D ++KSL L + V + + +I ++ Q K +++ Sbjct: 781 NRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 840 Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ +S + + + + K + + ++ K+ + + K + Sbjct: 841 TAIDTISTYFEENKDSPSLVIKLPISANQKAISESLTHVKTKLSGKALYVFAAD-GSKVA 899 Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGG 866 VT DL +A + A + ++GG Sbjct: 900 HGCYVTPDLTTKGASANEWASAVSSIVGGK 929 >gi|294790797|ref|ZP_06755955.1| alanine--tRNA ligase [Scardovia inopinata F0304] gi|294458694|gb|EFG27047.1| alanine--tRNA ligase [Scardovia inopinata F0304] Length = 900 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 318/932 (34%), Positives = 488/932 (52%), Gaps = 71/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I F+ +F+K+ H +LPS+SLI N PT +FT +GMVPF G++ P + V Sbjct: 1 MRTSEIAKQFVTYFEKHDHLVLPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116 T+ QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AI AW+LLT Sbjct: 60 TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKAEAIHYAWELLTLPQDQG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + ++ +L++T Y +DEEA LWK G+ + + + DNFW+ GP GPCSEI+ Sbjct: 116 GYGFNKDKLWVTTYTDDEEARSLWKNE-GMDPEHMQVLGMEDNFWTTGGPGPGGPCSEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 D+G G G + RYIEIW+LVF FE N + + + +IDTGMGL Sbjct: 175 VDRGPEY-GSDGGPIADENRYIEIWDLVFENFEVDNVKSKTDMHIVGELANKNIDTGMGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+ +E+++G+ Y + +N V RV+ DH+RS+ ++ D Sbjct: 234 ERVAYLLQGKENIYETDEVFPVIEEAERLSGLTYGEDPHNDVRFRVVADHVRSALMIMGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRR++RR++ ++LG + HLLP +M +YPEL + + Sbjct: 294 GVRPSNEGRGYVLRRLIRRSIRAMKMLGVDHEVFPHLLPVSKAQMRLSYPELDDSFDEVC 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--------KDEILNGDVAFKLYDTHGLPLDI 400 ET E+ F +TLD+G +LD +S ++G AF L+DT+G P+++ Sbjct: 354 ETAYGEEAAFRRTLDQGSSILDLAISKAKDGALKAGSDSPRVSGKDAFALHDTYGFPIEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIG 459 +I +G +D +F + +Q+ RARA +L ++ +++ +F G Sbjct: 414 TTEIAREKG-VEVDQNAFRDLMAQQKRRARADALRKRHNVDLSVYDDVRKALKEPIEFTG 472 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQT 518 Y V AI+ + VE VE+V D+T Sbjct: 473 YKEYSSR-----------------------GKVLAIIDEELGSVESVTGPATVELVLDRT 509 Query: 519 PFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 PFYAE GGQ+ D G D L + DVQK + ++VHH ++ G + + ID Sbjct: 510 PFYAEQGGQMADYGQISSDKGASLDVDDVQKPVKDLYVHHCLLTEGTISLGDEVSSAIDV 569 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 Q R ++ H+ATH+LH + +LG +Q+GS + PD LRFD SK +TS++L IE Sbjct: 570 QRRIGMTHAHTATHVLHKVVREVLGQKATQSGSVVDPDRLRFDFHWSKALTSSQLHQIES 629 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I +L V + M A++ GA L G KY D VRVV++ S LCGGT Sbjct: 630 RVNARIRDDLEVTWKNMPINQALSLGAMHLFGDKYGDVVRVVTIGS---DGWSRELCGGT 686 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 H + TG I ++SESS+ G+RRIEA+ G ++ Q + LAS L + Sbjct: 687 HAARTGTIGSFTLLSESSVGTGVRRIEALVGDKSYEFNHSQHSLINKLASDLNSRPDELE 746 Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELK 810 R+ + + ++ A+ ++++ + L A + + V + L+ Sbjct: 747 ERLTALEDRLKESDRKLAQIYEKQIEDMIPQLVSQTQASADPVWVASKNVGVFGSVEALR 806 Query: 811 SVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGG 865 + ++ ++ LVG+S + ++ V T + A DLAR ++K+LGG Sbjct: 807 KAATDTRSRLGDDKPAVVALVGVSSDSGKPIICVATNAPARKNGIKAGDLARAASKILGG 866 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GG GG+P AQ GG + ++A+ A+ + ++ Sbjct: 867 GG-GGKPDFAQGGGQDASQAEAALDEIKRQVE 897 >gi|224047577|ref|XP_002187191.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial [Taeniopygia guttata] Length = 986 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 287/964 (29%), Positives = 438/964 (45%), Gaps = 81/964 (8%) Query: 3 NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + IR FL FF++ +GH LPS+ + P DP L+F N+GM FK IF G P Sbjct: 32 SAGQIRAAFLRFFEERHGHRRLPSAPVRPRGDPRLLFVNAGMNQFKPIFLGTVHPRSELA 91 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A +AW+LLT+ Sbjct: 92 QYRRVVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTE 151 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 +++ + RLY+T + DEE +W G+ A ++ DNFW M +TGP Sbjct: 152 VYEIPRDRLYVTYFGGDPSLGLSADEECRDVWL-HLGVPASHVLPFPLKDNFWEMGDTGP 210 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D ++ +EIWNLVFMQ+ ++ + LP+ +DTGM Sbjct: 211 CGPCTEIHYDHVGGGRNAAALVNQGSPDVVEIWNLVFMQYSREVEGNLLPLPQHHVDTGM 270 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHL 279 GLER+ TVLQ K ++YD DLF ++ A +V G + +RV+ DH+ Sbjct: 271 GLERLVTVLQNKRSSYDTDLFTPILDAIHKVCRAPRYQGLVGNADVGRVNMAYRVVADHV 330 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ I DGI P G VLRRI+RRA+ + L L+ L+P + +G AYP Sbjct: 331 RTLCVCITDGIYPGFSGAELVLRRILRRAVRFCSEVLQAPPGLLASLVPTVVEVLGDAYP 390 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + I++ L + F +L+RG +++ + + +VA+ LY + G PL Sbjct: 391 ELTRNANQIKDILNENEAAFLSSLERGRRIIERTVQQMEPSTNFPAEVAWSLYGSLGFPL 450 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK--IWFSLKEKYGATQ 456 D++ +L +G +D +FN+ E R +GT SL G++ Sbjct: 451 DLIDLMLEEKG-ISLDSAAFNKLALEDAKRKAGGPQAGQTGTANTRLDVHSLAWLQGSSV 509 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 + + + V + + + +E +GQ+ V+ D Sbjct: 510 --------PTTDDSPKYTYTLGLHGQYEFSPCQATVLMLYKDQSLHKEVGAGQRCGVILD 561 Query: 517 QTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +T FYAE GGQ D G I + G +V H + LR + L + Sbjct: 562 RTNFYAEQGGQDSDQGYMIRLGQQDVLFPVESVHLCGGYVIHEVTAVETLRAGDQVQLFV 621 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R NH+ATHLL AL +LG Q GS +T LRFD +T +L+ + Sbjct: 622 DEAQRLACMRNHTATHLLSFALRRVLGDSTEQRGSHVTAQQLRFDFDTKGHVTVEQLQQV 681 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YED 685 E V D+I +N V + A + +Y D VR+VS+ + Sbjct: 682 EQVVRDLIQKNEVVHMAEVPLTLARRVQGLRAVDEEYPDPVRIVSLGVPVENVLTCDSKA 741 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL---MGQDEKL 742 S LC GTH+ TG + L I+SE + GI R+ A+TG RA+ ++ Sbjct: 742 AMQTSVELCCGTHLLQTGSVEDLAIISERQLVKGISRVIAVTGGRAKEAREVGQCLAVEV 801 Query: 743 KSLASFLKVSQGNVVG------RVEEIWE----------EYRKLQLIHAKRK--LQLNVE 784 S++ +K ++ V ++ + + ++LQ I + ++ Sbjct: 802 DSVSLRMKQRITSIPEMQNLSKEVGQLTKVVASTAMPQWQRKELQTILKALQRTANTAIK 861 Query: 785 DLSCHKIADVNFMS--------HIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKE 833 L + V + II + + L V++ L K ++L+ Sbjct: 862 KLELQQAEKVAQILLAKYCNQPVIIDTIPADSLSILMKVVNQLCDKSPGTSVLLLSPQTS 921 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 + V++ L F+A D A + G GG P +A+ G N A+ Sbjct: 922 GEVLCACQVSKSCLPGFSAADWAMAVCTQME-GKAGGSPIVAKGSG-NAKGMQGALTTAL 979 Query: 894 SFLK 897 F + Sbjct: 980 EFAQ 983 >gi|330802829|ref|XP_003289415.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum] gi|325080498|gb|EGC34051.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum] Length = 925 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 342/915 (37%), Positives = 479/915 (52%), Gaps = 88/915 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 IR FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FTG E+ Y+ VT Sbjct: 34 TTKEIREKFLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTGLEESKYKLVT 93 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY FK +IQ AW+LLTK+F L Sbjct: 94 TSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWNLLTKDFGL 153 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQ 179 + RL I+V + DEE+ +W+ GLS DKI+ + DNFWSM + GPCGPCSEIF+D Sbjct: 154 PKERLAISVLEGDEESASIWRDQIGLSNDKIMYLGKKDNFWSMGDGPGPCGPCSEIFWDH 213 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE G +GER++EIWNLVFMQ+ + K E L +DTGMGLERMATVLQ Sbjct: 214 GE-------GKEVDGERFLEIWNLVFMQYNRNEKGELEKLAMPCVDTGMGLERMATVLQG 266 Query: 240 KTNNYDIDLFKHLIQASEQVTGMK----------YEGNNIVNHRVIVDHLRSSSFLIADG 289 KT NYDIDLF++LI + ++ + V +RVI+DHLRS SFLI+DG Sbjct: 267 KTTNYDIDLFQNLINSFKEQVMIDPTKASHIIKQDPQRVEVAYRVIIDHLRSISFLISDG 326 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P N GRGYVLR+I+RRA+ Y +LLG+ P + L L EM +P+L + I+ Sbjct: 327 VIPFNIGRGYVLRKIIRRALSYGKLLGFEGPFLYQLFSILEHEMADTFPQLRERSNEIKN 386 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 L +E+ F K + RG+ L+ ++ LN D F LY+T+GLPL+ + ++ + Sbjct: 387 VLLNEETTFYKAIKRGIPYLEEMIDR----GQLNEDNLFLLYNTYGLPLE-ISEVKAKQN 441 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE----KIWFSLKEKYGATQFIGYDLLRG 465 ID+ ++E R+++RA S K + +FIGY+ Sbjct: 442 NIEIDMEKVANLVDETRNQSRATWKSNESQPNTNNPLDEVKKWKNDNISPKFIGYET--- 498 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T S++ V + FD++PFY ++G Sbjct: 499 -------------------TLNDESLITKSFFDN-------DNHLVYLSFDKSPFYGKSG 532 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-----------TEMSLVLT 574 GQ+GDTG + +V+ + + Sbjct: 533 GQIGDTGIIKSKNSNQIYNVIDTIKPYDNSLVLVVKWDPTKQLITNVQDDLAEGSIVSSQ 592 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ++ R+Q +I+HSATHLLH AL I+G V Q GS + P+ LRFD TH K ++ E+ Sbjct: 593 VEKSVRKQTAIHHSATHLLHAALREIIGKSVVQAGSFVGPNILRFDFTHGKKLSVKEIDQ 652 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE VND+I Q++ + T M +A A L KY D VRVVS+ S LC Sbjct: 653 IEKWVNDVIDQDIYLETHEMPYSEASKGDAIQLFSEKYTDLVRVVSIPG-----FSKELC 707 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTHV + +I I+SESS+ AG RRIEAI G+ A + ++S++ + V Sbjct: 708 GGTHVERSSDIHHFKIISESSVAAGTRRIEAIAGKVATEWFKSHYKMVQSISDNINVPLT 767 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK--IADV--------NFMSHIISEV 804 N +E + ++ + + L++ + S H I V H++ Sbjct: 768 NFQPSIERLVSSNKQKEKEIEELNLKIALLSASSHSGHICGVECGSGIDHPLSIHVVDCD 827 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863 DSK L + + K + I + +SK+ KA + ++ + A + + L Sbjct: 828 DSKILNVIAGSFSKSNPNHI--NITVSKKGKAICNLGANQEPNSLKTTADTIVKKLLSSL 885 Query: 864 G-GGGGGGRPHMAQS 877 GG GGG +A + Sbjct: 886 NCGGKGGGSKILANA 900 >gi|316967113|gb|EFV51596.1| putative alanine--tRNA ligase [Trichinella spiralis] Length = 962 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 286/979 (29%), Positives = 443/979 (45%), Gaps = 116/979 (11%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 ++IR TF+ +F +K H+ + SSS+IP DP+L+FTN+GM FK IF G P Sbjct: 6 TANAIRQTFINYFTEKRNHQYVHSSSVIPKGDPSLLFTNAGMNQFKPIFLGTADPNSQMA 65 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 ++ V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW++LTK Sbjct: 66 SWKRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKDICAWAWEVLTK 125 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 EF + + +LY+T + D E ++W GL +++++ DNFW M + GP Sbjct: 126 EFKIPKEQLYVTYFGGSEKCRLQPDVECRQIWLD-MGLPSERVLPFGMKDNFWEMGDIGP 184 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ +++ +EIWNLVF+ + + LPK ID G+ Sbjct: 185 CGPCSEIHYDRIGN-RNAANLINKDDPDVLEIWNLVFITYNRDKDGSLHPLPKRHIDCGL 243 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 G ER+ +V+Q K +NYD DLF + + ++ + +RV+ DH+ Sbjct: 244 GFERLVSVIQGKKSNYDTDLFVPIFNRIAETAKVRPYMGKVGEEDEQQIDMAYRVVADHI 303 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM---GS 335 R+ + ++DG P N GRGYVLRRI+RR + YA L +L+P + + G Sbjct: 304 RTLTVALSDGGRPDNCGRGYVLRRILRRGVRYATEKLNAPSGFFANLVPVVVETLVEDGE 363 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PEL + + E + E+ F KTL RG +L + KD+++ G VA++LY ++G Sbjct: 364 TFPELKEDPNSVMEIINEEESLFLKTLSRGSRVLRQEIEKASKDKLIPGVVAWRLYASYG 423 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + G EE R +A+ S S + + F++ Sbjct: 424 FPVDLTQLMAEESGYKVNMEE-----YEECRQQAQMSSSSKFSQLNDVVDFNINA----- 473 Query: 456 QFIGY----DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 + Y + K ++ + V V A+ + GE V E SG Sbjct: 474 --VNYLLNGKVPLTDDKPKYAYRLTENGDDDYEFDEVKCEVLALRKNGEFVSEVCSGDSC 531 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+T FYAE+GGQ+ D G GD ++ +VQ + I H G + L Sbjct: 532 CLICDKTAFYAESGGQIYDEGSMEGDKSEFRVRNVQARGGYIV--HFGEVMGTITRGSKL 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 +D + R Q+ NH+ATHLL+ AL +LG V Q GS + D LRFD T P+T + Sbjct: 590 FQNVDQKRRVQVMKNHTATHLLNFALREVLGQ-VEQKGSLVLTDRLRFDFTCKAPLTVEQ 648 Query: 632 LKSIEDNV-NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------- 682 L IE V N + + + + +G + Y D VRVVSV Sbjct: 649 LMKIEQIVANIVNSDVEIYMQEVPLGVAKTIAGLRSTADETYPDPVRVVSVGTPVDALLK 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + S CGGTH+ TG + I SE ++ GIRRI A+T A + + Sbjct: 709 DPDGPGAKLASVEFCGGTHLLRTGHLGDFVIASEEAVARGIRRIVALTCHEAEQAVQKLE 768 Query: 740 EKLKS----------------------------------LASFLKVSQ------GNVVGR 759 + L +K SQ ++V + Sbjct: 769 YFVNKVEEVIDLIRSSVLSGELDYSFLNRKISGCLEVGWLCVEMKASQIPAWRREHLVRK 828 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818 + ++ + + +Q+ ++ +I D + H +K L + + L+ Sbjct: 829 LAQVKATLDDFEKGERMKFVQMITDEAKNLQIPDDGIVVHEFPPNATAKALDTALKQLKC 888 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + I+ SK K+ + A + GG GGG+ AQ+ Sbjct: 889 RAG---IVFSQDSKNKRVECV-------DKGLTAKAWVDRLC-CVAGGYGGGKETTAQAS 937 Query: 879 ---GPNGNKAD-QAIAGVA 893 G +K +A Sbjct: 938 LGTGLPVDKIKTEAEKFAK 956 >gi|296420542|ref|XP_002839828.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636034|emb|CAZ84019.1| unnamed protein product [Tuber melanosporum] Length = 959 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 292/964 (30%), Positives = 459/964 (47%), Gaps = 94/964 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TF+++F+ NGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 15 VRKTFIDYFKNNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPSSDFASLKRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ + LD Sbjct: 75 ANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTEIYGLD 134 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D E +LW+ G++ + I+ DNFW M + GPCGPCS Sbjct: 135 PDRLYVTYFEGNKERGLEPDLETQELWRA-VGVADNHILPGNMKDNFWEMGDQGPCGPCS 193 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E+ +D + + IEIWN VF+Q+ ++ LP +DTGMG ER+ Sbjct: 194 EVHYDHI-GGRNASHLVNMDDPNVIEIWNNVFIQYNREPDHSLRSLPNKHVDTGMGFERL 252 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 +VLQ+K++NYD D+F L Q +++T + G +RVI DH+R+ +F Sbjct: 253 VSVLQDKSSNYDTDVFSPLFQKIQEITKARPYGGKFGAEDVDGIDTAYRVIADHVRTLTF 312 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPELIQ 342 IADG +P NEGRGYV+RR++RR YAR ++P L ++G +PE+ + Sbjct: 313 AIADGGVPNNEGRGYVVRRVLRRGARYARRYFQAPIGEFFSKIVPTLVLQLGDVFPEIKK 372 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDI 400 + ++E L E+E F +TLDRG + D + +L G ++LYDT G P+D+ Sbjct: 373 KESDVKEILNEEEESFSRTLDRGERMFDVFSKRATEHNSKVLKGSDVWRLYDTFGFPVDL 432 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + GL I+ F +A E + ++A + L Sbjct: 433 TRIMAEENGLE-INEEEFERAKAESKEASKARKSSGDVELLKLGVHDL------------ 479 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE---VVFDQ 517 + + ++ + AI + + ++ D+ Sbjct: 480 -----GRLEQMAEVPKTDDVYKFGRGNITGHIMAIYCDKSFRSSTANISRYTQLGLILDK 534 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG + DG + G +H ++ G L ++ D Sbjct: 535 TNFYAEQGGQEYDTGKILIDGEAELDVQNVQVYGGYVLHTGYIKYGTLSVGDDVICEYDE 594 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L++AL +LG + Q GS + + LRFD +H +T AEL+ IE Sbjct: 595 LRRWPIRNNHTGTHVLNYALREVLGDGIEQKGSLVAAEKLRFDFSHKCGVTDAELEMIEK 654 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 + I QNL V + + G A+ G Y D VRVVSV + Sbjct: 655 ISTEYIRQNLEVYSEDVPLSIAREIEGVRAVFGETYPDPVRVVSVGVPIEELTRDVKNKQ 714 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV T +I L I+ E+ I GIRRI A+TG A Sbjct: 715 WRKVSIEFCGGTHVQKTDDIKDLIILEENGIAKGIRRIVAVTGNDAGKVQKIASQFEERI 774 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHAK 776 ++ ++KS+ + L + V +V +++ ++ + Q K Sbjct: 775 NALGKLPAGPRKEAEIKSVQADLNSLVISAVKKVQLKDKFGKIHKQLLDDQKAKQKAELK 834 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--K 834 + +++ E F+S + +SK L + +Q K + + L + Sbjct: 835 KAVEIVTEHFK-QNPDSPYFVSKLPISANSKALSDAIKHVQTKAKDKTVYLFATDDDAEG 893 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K V E++ + +A DLA ++++GG GG Q G +K +A+ A Sbjct: 894 KVIHGCYVAENVGKQLSAKDLADSISQIVGGKAGGKGATS-QGIGNKVDKVGEAVDAAAK 952 Query: 895 FLKK 898 L++ Sbjct: 953 ALQQ 956 >gi|58268868|ref|XP_571590.1| alanine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21] gi|134113024|ref|XP_774788.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257434|gb|EAL20141.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227825|gb|AAW44283.1| alanine-tRNA ligase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1012 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 291/968 (30%), Positives = 441/968 (45%), Gaps = 95/968 (9%) Query: 4 VSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 + +R TF+++F H PSS ++P +D TL+F N+GM +K +F G P Sbjct: 62 AAKVRQTFIDYFVNQPGFEHTFWPSSGVVPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK A+ +AWDLLT Sbjct: 122 SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVGALTMAWDLLT 181 Query: 116 KEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + L + RLY+T ++ D EA ++W+ + G+ I+ DNFW M TG Sbjct: 182 RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSEI FD+ + + +EIWN VF+Q+ ++ E LP +DTG Sbjct: 241 PCGPCSEIHFDRI-GGRDAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHVDTG 299 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278 MG ER+ +VL ++NYD D+F + +++TG + +RVI DH Sbjct: 300 MGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVIADH 359 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSA 336 +R+ + I+DG +P +GRGYVLRR++RR + YA L+P + +G Sbjct: 360 IRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESLGPI 419 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTH 394 +PE+ + + E L E+ F +TL+RG L + + K +L+G ++LYDT+ Sbjct: 420 FPEVTKKIPELTEILNEEEASFARTLNRGEALFNKYATTAIDEKRTVLSGKDIWRLYDTY 479 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ Q + RGL ID +F +A E ++A + L Sbjct: 480 GFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGGKEKAGALVKLDVHDLA----- 533 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKV 511 D + + + VK+I + + Sbjct: 534 ------------ALEANDAVPKTDDSFKYHLDDIKANVKSIYHGSKFLNSTSELPPNTTF 581 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+T FYAE+GGQ DTG DG + + G +H +E G + + Sbjct: 582 GILLDRTNFYAESGGQEYDTGVIAIDGKAEFKVEDVQVYNGYVLHIGRMEEGDIEIGDEV 641 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + T D R + NH+ TH+L+ AL +LG H+ Q GS + P LRFD +H K I E Sbjct: 642 ICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSIAVPE 701 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVE-------- 682 L IE ND I + +PV + M +A G A+ G Y D VRVVS+ Sbjct: 702 LIKIEGICNDWIKRGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVSLGYPLEDIAK 761 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------ 733 S CGGTHV+ T +I I+ ESSI GIRRI A+TG A Sbjct: 762 NVEDSKWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDAHDVSRKGV 821 Query: 734 HLMGQDEKLKSLASFLK------------------VSQGNVVGRVEEIWEEYRKLQLIHA 775 + +++K L K + + ++ + E+I E Sbjct: 822 EFERKLQRIKELQGKEKEVAMKPFLVELGQSGISLIKKNSLKEQFEKIQGELVAAAKAKV 881 Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK 832 ++ E + + + N + +SK L + + A + + + Sbjct: 882 AADSKIISEAIKTYFQENPNENVFAGSFDVGGNSKTLTAAVAAGKSA-SKAVYAFSADPE 940 Query: 833 EKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K + + + + + +A AKV+ GG GGGR A G +K D+AI Sbjct: 941 TGKVAHVNYLPKPILESKALDAKIWLNEVAKVI-GGKGGGRDDSAAGVGSEISKIDEAIV 999 Query: 891 GVASFLKK 898 S KK Sbjct: 1000 VAKSVYKK 1007 >gi|229093459|ref|ZP_04224562.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42] gi|228689930|gb|EEL43734.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42] Length = 791 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 309/823 (37%), Positives = 475/823 (57%), Gaps = 53/823 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFS G YFKE AI AW+ LT K D+ L +T++ EDEEAF +W + G+ + Sbjct: 1 MLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKE 60 Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG----LPGSSEEGERYIEIWNLVF 205 +IIR+ +NFW + E GP GP +EIF+D+GE E ERY+E+WNLVF Sbjct: 61 RIIRL--EENFWDIGE-GPSGPNTEIFYDRGEAYGNDFSDPELYPGGENERYLEVWNLVF 117 Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265 QF LPK +IDTGMGLERM +++Q+ N+D DLF +I A+E ++G KY Sbjct: 118 SQFNHNPDGSYTPLPKKNIDTGMGLERMTSIVQDVPTNFDTDLFMPMIGATETISGEKYR 177 Query: 266 GNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322 + + +VI DH+R+ +F + DG LP+NEGRGYVLRR++RRA+ Y++ L P M Sbjct: 178 NGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFM 237 Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-- 380 L+P + M YPE+++ K I + +++E+ERF +TL G +L V++ +++ Sbjct: 238 FELVPVVGEVMKDFYPEVLEKKDFIAKVVKNEEERFHETLHDGEAILAEVIAKAKEEKTT 297 Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 +++G AF+LYDT+G P+++ ++ G+ +D F +E+QR RARA + S Sbjct: 298 VISGVDAFRLYDTYGFPIELTEEYAEEAGMT-VDHEGFENEMEKQRERARAARQDVDSMQ 356 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 + L E A++F+GY T S V A+V+ GE Sbjct: 357 VQGGV--LGEVKVASEFVGY-----------------------GTVATESNVVALVKNGE 391 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 + G++ +++ D TPFYAE+GGQ+ D G + DG+++ + DVQK G +H +V Sbjct: 392 YTDSLQVGEEGQLMLDVTPFYAESGGQIADRGYLLADGVKVLVKDVQKAPNGQNLHQVVV 451 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 E G L+ + ++ ID +NR + NH+ATHLLH AL +LG+HV+Q GS +T + LRFD Sbjct: 452 EEGTLKKDAAVKAIIDTKNRSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLRFD 511 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680 +H + + EL+ IE VN+ I +++ V E+A GA AL G KY D VRVV Sbjct: 512 FSHFGQVQADELEKIERIVNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQ 571 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 V G +S LCGG HV +T I + IV+ES I AG RRIEA+TG+ A + Q Sbjct: 572 V-----GDYSLELCGGCHVDNTASIGIFKIVAESGIGAGTRRIEAVTGKSAYELMNDQVG 626 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVN 795 LK A +K + +++ RV+ ++ E ++LQ + +L+ + S + VN Sbjct: 627 LLKEAAGKMKTNPKDILTRVDGLFAEVKQLQKENESLAAKLSNIEAGNLTDSVMTVDGVN 686 Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVD 854 ++ ++ D L+++MD L+ K++S +++L + + K ++L VT+DL+ ++A Sbjct: 687 VLAAKVNVADMNNLRTMMDDLKNKLESAVVVLASV-NDDKVNILAGVTKDLISQGYHAGK 745 Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 L + A GGGG GGRP MAQ+GG N + ++A+A V ++K Sbjct: 746 LVKEVASRCGGGG-GGRPDMAQAGGKNPAQVEEALAFVQEYVK 787 >gi|224014532|ref|XP_002296928.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] gi|220968308|gb|EED86656.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] Length = 933 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 313/952 (32%), Positives = 467/952 (49%), Gaps = 88/952 (9%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 S IR+TF+ +FQ K+ H +PSS P NDPTL+FTN+GM FK IF G+ P Sbjct: 3 TTSKIRSTFISYFQSKHSHTFIPSSPSAPLNDPTLLFTNAGMNQFKPIFLGRAPPGTELA 62 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 QKC+RAGGKHNDL++VG+ HHTFFEMLG++SFG YFK+ AI AWDLLT+ Sbjct: 63 TLTRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGSWSFGDYFKKEAIDYAWDLLTE 122 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + +++ RLY T + +ED EA W + L ++++ + DNFW M +TGP Sbjct: 123 VYGIEEERLYATYFQGDEALGLEEDTEAKDFWLRY--LPEERVLGCSAKDNFWEMGDTGP 180 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ +E+ IEIWNLVF+QF + LP +DTGM Sbjct: 181 CGPCSEIHYDRIGNRDASA-LVNEDDPDVIEIWNLVFIQFNRDENG-LNPLPAKHVDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHL 279 GLER+ ++LQ K++NYDID F + A E+V + + + +R + DH Sbjct: 239 GLERLCSLLQNKSSNYDIDAFTPIFDAIEKVANVGPYEGKLGEEDKTLKDTAYRAVADHA 298 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ +F +ADG +P NEGRGYVLRRI+RRA Y + L L+P + G YP Sbjct: 299 RTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFSTLVPVVVEIFGEHYP 358 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 ELI + I E ++ E+E F LDRG+ + +S K +++ GD AF LYDT G P+ Sbjct: 359 ELIANQANIIEIVQEEEEAFSTMLDRGIKYFEEEISD-DKKKLVPGDKAFFLYDTLGFPI 417 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + + G+ +D+ F + +E Q+ R+R L +++ L + Sbjct: 418 DLTELMATEAGMT-VDMKGFEEEMEGQKQRSREARLAAKGLGGQRL--ELIAE------- 467 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEVVF 515 + + E D V + +KA+ + + A G V +V Sbjct: 468 -----QTAWLADEGIADTDDSSKYDWDKVVDASIKAVFTSDGFLGEGDVAKEGDTVGLVL 522 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAEAGGQ D G +G L + DVQ +H ++ +G + +++ + Sbjct: 523 DKTSFYAEAGGQDTDLGTISFEGGELFVNDVQAYGGY-ILHSGVISKGSVSVGIAVKCQV 581 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 DY RR ++ NHS TH+L+ AL +LG Q GS + LRFD +H +++ +L+ Sbjct: 582 DYARRRDVAPNHSMTHVLNAALREVLGEGCDQRGSQCNDEKLRFDFSHKSAMSTEQLRDT 641 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 E V D I +NLPV +M+ DA A G A+ G Y D VRVV V S C Sbjct: 642 EIYVRDTIEKNLPVTADVMSLADAKAIPGVRAMFGEVYPDPVRVVRVGD----DCSVEFC 697 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK----------- 743 GGTH+S+T E + E+++ GIRRI A+T A E++ Sbjct: 698 GGTHISNTAEAEAFVLTEETAVAKGIRRITALTRGAAFEQKTAALEEIDADNSPDLDKQA 757 Query: 744 ----------SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCH 789 L++ LK + R+E + ++ + + ++ E++ Sbjct: 758 GALRKDLDAAELSAALKS---ELRARIEGVQKKGIEAKKRLLAGRVDKCLNGVTEEVEKA 814 Query: 790 KIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK---EKKASVLIVVTED 845 I + + DSK + V+ A+QK M + + K +V + Sbjct: 815 LIDGKKSLVLNLDIGADSKASQKVIKAVQKLAPEMAFMGISEEEPGSGGKILCFAIVPDS 874 Query: 846 LLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 L+ A + + +GG G GG+P AQ P+ IA SF Sbjct: 875 LMKETGLKANEWTKEVLDSVGGRG-GGKPGSAQGQAPSCEDVGAVIAKAESF 925 >gi|146321099|ref|YP_001200810.1| alanyl-tRNA synthetase [Streptococcus suis 98HAH33] gi|145691905|gb|ABP92410.1| Alanyl-tRNA synthetase [Streptococcus suis 98HAH33] Length = 830 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 299/856 (34%), Positives = 460/856 (53%), Gaps = 63/856 (7%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT + Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287 GLER+A + Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + I Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405 E+ ++SE+E F +T+ G + ++ L + ++G FKLYDT+G +++ +++ Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +DI F A++EQ+ RARA + GS + +L + F+ Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + IV E GQ +VFDQTPFYAE G Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQ+ D G + T + +KA H + + + L I+ + R+ + Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ VN+ I Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV +T E Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V +VE + Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ R LQ +A K + + + +++ + D+ L++ D ++ Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEK 834 K S +++LV +K Sbjct: 800 KDYSDVLVLVAAIGDK 815 >gi|154288058|ref|XP_001544824.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1] gi|150408465|gb|EDN04006.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1] Length = 910 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 287/965 (29%), Positives = 437/965 (45%), Gaps = 146/965 (15%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PARLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG ER+ Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L ++TG + +RV+ DH+R+ +F Sbjct: 255 VSILQNKSSNYDTDVFTPLFGKISEITGCRPYTGKFHDEDTDGIDTAYRVVADHVRTLTF 314 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG L + + L+G ++LYDT G P+D+ Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGKLHGADVWRLYDTFGFPVDL 434 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RGL N EE R +A+ S G G T + + ++ + Sbjct: 435 TRLMAEERGLTID-----NAEFEEARLKAKEASKGQGKRTADVVKLTVHDLG-------- 481 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 + + ++S +KAI V+ G++ ++ D+ Sbjct: 482 ------LLETMEDVPKTNEDAKFGRGNITSQIKAIYYNKNFVDSTKHIPQGEQFGIILDR 535 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I + + + I G Sbjct: 536 TNFYAEQGGQENDTGKII-----IDGKAELAVEDVQVLGDGIEHNG-------------- 576 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 S + + LRFD +H ++ ++L+ IE Sbjct: 577 --------------------------------SLVAAEKLRFDFSHKSAVSDSDLEKIER 604 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + + SG A+ G Y D VRVVSV Sbjct: 605 ISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 664 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A L Sbjct: 665 WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 724 Query: 736 MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776 ++ K + A L+V + V + +++ E + Q + +K Sbjct: 725 RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 784 Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834 + L + + + + K L ++ ++ K+Q + + KE Sbjct: 785 KALDAITGYFEAPENKVAPHLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKEAG 844 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + L + D A + ++ GG GG+ ++ G K D+AI Sbjct: 845 KVVHGCHVAQALSEQGATPNDWANTVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 903 Query: 894 SFLKK 898 +L+K Sbjct: 904 EYLEK 908 >gi|225560127|gb|EEH08409.1| alanyl-tRNA synthetase [Ajellomyces capsulatus G186AR] Length = 1029 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 290/965 (30%), Positives = 446/965 (46%), Gaps = 116/965 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 106 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 165 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK TFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ Sbjct: 166 HNSQK---------------------TFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 204 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW G++ D ++ DNFW M E GPCGPCS Sbjct: 205 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 263 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTGMG ER+ Sbjct: 264 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 322 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L + ++TG + +RV+ DH+R+ +F Sbjct: 323 VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 382 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 383 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 442 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG L + + L+G ++LYDT G P+D+ Sbjct: 443 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGKLHGADVWRLYDTFGFPVDL 502 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RGL N EE R +A+ S G G T + + ++ + Sbjct: 503 TRLMAEERGLTID-----NAEFEEARLKAKEASKGQGKRTADVVKLTVHDLG-------- 549 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517 D ++S +KAI + V+ G++ ++ D+ Sbjct: 550 ------LLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 603 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG I DG + + G +H ++ G S++ D Sbjct: 604 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 663 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H ++ ++L+ IE Sbjct: 664 LRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 723 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + + SG A+ G Y D VRVVSV Sbjct: 724 ISTDYIRQNCAVYAKDVPLAIARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 783 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A L Sbjct: 784 WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 843 Query: 736 MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776 ++ K + A L+V + V + +++ E + Q + +K Sbjct: 844 RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 903 Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834 + L + + + + K L ++ ++ K+Q + + KE Sbjct: 904 KALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYMFAADKEAG 963 Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K V + L + D A + ++ GG GG+ ++ G K D+AI Sbjct: 964 KVVHGCHVAQALSEQGATPNDWANTVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 1022 Query: 894 SFLKK 898 +L+K Sbjct: 1023 EYLEK 1027 >gi|323307226|gb|EGA60508.1| Ala1p [Saccharomyces cerevisiae FostersO] Length = 833 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 273/831 (32%), Positives = 413/831 (49%), Gaps = 66/831 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A ++ Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794 L + K+ + + + ++L + + + + ++ K + Sbjct: 769 DLDAADKLPFSPIKEK------KLKELGVKLGQLSISVITKNELKQKFNKI 813 >gi|187735876|ref|YP_001877988.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835] gi|205829974|sp|B2UKT4|SYA_AKKM8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187425928|gb|ACD05207.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 942 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 302/949 (31%), Positives = 446/949 (46%), Gaps = 135/949 (14%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59 M + IR +FL+FF++ H ++PS+SL+P + P L+FTN+GM F F G P + Sbjct: 1 MMTATEIRQSFLDFFREKQHTVVPSASLMPQS-PGLLFTNAGMNQFVPYFLGVWTPPWTP 59 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+RAGGKHNDL++VG + HHTFFEMLGN+SFG YFK AI+ AW+L+ + + Sbjct: 60 ARATDTQKCIRAGGKHNDLEDVGYDSYHHTFFEMLGNWSFGDYFKREAIRWAWELVVERW 119 Query: 119 DLDQRRLYITVYDEDE----------EAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164 RLY TVY D+ EA+ W ++ GL D I+ DNFW M Sbjct: 120 GFPAERLYATVYAPDKSKGDPGEFDREAWDFWAELFRSRGLDPDVHIVHGNVKDNFWMMG 179 Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 ETGPCGPCSE+ D +++ ++ IEIWNLVF+Q+ ++ LP + Sbjct: 180 ETGPCGPCSELHVDLTPEGNTKGSLVNKDSDQCIEIWNLVFIQYNAESDGSMRNLPACHV 239 Query: 225 DTGMGLERMATVLQE---------KTNNYDIDLFKHLIQASEQVTGMKYEG--------- 266 DTGMG ER +++Q K +NY D+F+ L E ++G KY Sbjct: 240 DTGMGFERACSIMQCTNGFKDFSRKPSNYATDVFRPLFDRLEVLSGRKYADVYPAPGSKR 299 Query: 267 --------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318 + RVI DHLR+ SF IADGILP N GR YVLRRI+RRA+ Y R LG+T Sbjct: 300 VDAEDGTLQEAIAFRVIADHLRTLSFSIADGILPGNNGRNYVLRRILRRAVRYGRRLGFT 359 Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378 +P + L+ L G +PEL ++E L E+ F +TLDRGL L D + Sbjct: 360 QPFLAELVDTLVESFGQVFPELAARATTVKEVLNREEASFNETLDRGLELFD---AETAS 416 Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438 ++G+ AFKLYDT+G P+D+ + RGL ID+ FN+ +EEQR RARA Sbjct: 417 AGKVSGEFAFKLYDTYGFPIDLTALLAEERGL-DIDMERFNRLMEEQRERARAARKSEVV 475 Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 + + T+F GYD+ + + E + Sbjct: 476 RALD------LKTDAVTEFTGYDVDECAATVLEVSR------------------------ 505 Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558 G + ++ D+TPFYAE GGQ+ D G G + VQ+ Sbjct: 506 --------QGDSLFIITDKTPFYAEMGGQVSDAGLIEIGGESYHVMAVQQIGNARAHVVE 557 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 ++ + L+ID + RR++ +H+ATHLLH AL ++ +Q GS ++ D LR Sbjct: 558 ARPGLEVKPGDRVHLSIDAERRRRIEAHHTATHLLHCALHQVVSPDAAQQGSFVSEDRLR 617 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVR 677 FD S ++ +L+ IE+ VN I ++LPV D + A A G KY D VR Sbjct: 618 FDFN-SSAVSPDQLRLIEEKVNGWIEESLPVHCTERAYADVKGNAAIAQFFGDKYGDVVR 676 Query: 678 VVSVEYEDGGVHSS--ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 VV V G+ CGGTH+++T I L I SE +I +G+RRIEA+TG A + Sbjct: 677 VVQVGGCRDGLDGVSMEFCGGTHIANTKNIGLFKIKSEGAIASGVRRIEAMTGDAALEMI 736 Query: 736 MG----QDEKLKSLASFLKVSQGNVVG--------------------------------- 758 + ++ +K + Sbjct: 737 RQHVVAKSLEIAKAVEKIKEVNYELADMGLEQVPVPTIEGKPGLTALGASDIRTVNDSLA 796 Query: 759 ----RVEEIWEEYRKLQLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811 VE + + K + + L ++D ++E + L+ Sbjct: 797 RFDASVEHFKQTALDAEKKLKKARAGQSAAKADALLNEWLSDAPSSLIQVAEGAGELLQE 856 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLS 859 +++ L+K+ +G L+ + + +D + D +A D+ R Sbjct: 857 LLNGLKKRQYAGAAFLLCVDSSS-LLLGAYCGKDAIADGLSAGDMIREV 904 >gi|296129664|ref|YP_003636914.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109] gi|296021479|gb|ADG74715.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109] Length = 897 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 311/932 (33%), Positives = 482/932 (51%), Gaps = 72/932 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F H ++PS LI DP+++FT +GMVPF G + + V Sbjct: 1 MRTAEIRQRWLDYFASKDHAIVPSVPLISP-DPSILFTIAGMVPFIPYILGTQDAPWPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116 QKC+R ND++NVGRT RH TFF+MLGNFSFG YFKE AI+LAW LT Sbjct: 60 ANAQKCIRT----NDIENVGRTTRHGTFFQMLGNFSFGDYFKEGAIELAWGFLTGAQESG 115 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD RL++T+++ED+EA G+ ++R+T + FW + GP GPC+E Sbjct: 116 GLGLDGDRLWVTIWNEDDEAADA-LVRVGVDPRHVVRLTREEIFWDTGQPGPAGPCAEWH 174 Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228 +D+G G+RY+EIWNLVF QF + + P + +IDTG Sbjct: 175 YDRGPEFGPDAVGGTVDPGGDRYLEIWNLVFDQFVR-GEGRGKDYPLLGELERKAIDTGA 233 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+A +LQ K N Y+ D +I+ + +++G +Y G + V RV+ DH+RS+ LI Sbjct: 234 GLERIAYLLQGKNNLYETDEVFPVIERAAELSGRRYGASGEDDVRLRVVGDHVRSALMLI 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+NEGRGYVLRR++RRA+ RLLG + + LLP MG +YPE+++ Sbjct: 294 GDGVTPSNEGRGYVLRRLVRRAVRSMRLLGVEDAALPELLPISRDLMGVSYPEVVRDFDR 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG-----KDEILNGDVAFKLYDTHGLPLDIM 401 I + E++ F +TL G + +G +S +L G+ AF L+DT+G P+D+ Sbjct: 354 ISQVAYGEEDAFLRTLTAGTTIFEGAVSKAKAGADGTGVVLTGEQAFALHDTYGFPIDLT 413 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK------EKYGAT 455 ++ G +D +F ++ QR RARA +L +G + + E + Sbjct: 414 LEMAAEHG-VDVDEQAFRTLMQAQRDRARADALAKKTGHADTSTYQQLQQALSAENGASV 472 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +F+GY ++ V ++ G A + V+VV Sbjct: 473 RFVGYTDT-----------------------TAATKVVGLLVDGVPAPAATAPADVQVVL 509 Query: 516 DQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D TPFYAEAGGQL DTG ++ DG +++ DVQ +G+ VHH + G L + T Sbjct: 510 DVTPFYAEAGGQLADTGTISLADGAIVEVDDVQAPIKGLSVHHGRLVDGTLTLGDTGTAT 569 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID RR ++ H+ATH++H AL LG +Q GS P LRFD + + ++ L Sbjct: 570 IDTARRRAIARAHTATHMVHKALREELGDTATQAGSENAPSRLRFDFRSGQSVPASSLSQ 629 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE VN+ + +L V R M ++A A GA AL G KY + VRVVS+ GG S LC Sbjct: 630 IEGRVNERLQDDLEVTDRTMAIDEARALGAMALFGEKYGNEVRVVSI----GGDWSRELC 685 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GTHV +GE+ L+ ++ ESSI +G+RR++A+ G A + + + L+ L Sbjct: 686 AGTHVRRSGELGLVTLLGESSIGSGVRRVDALVGDSAYGYQAKERALVSQLSGLLGARPD 745 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEV-DSKE 808 + RV + R+ + A + + ++ ++H EV + + Sbjct: 746 ELGERVSSLLTRVRESEKELAALRQAQVLAAASGLAAGAQQVGTALVVAHDAGEVAAADD 805 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGG 865 L+++ ++ ++ ++V + K ++VV + R A L R ++ VLGG Sbjct: 806 LRTLALDVRGRLGESSPVVVAVGGVAKGRPVVVVVTNAAAREAGHRAGALVRTASGVLGG 865 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GG GG+ +AQ GG + ++ A+ GV + ++ Sbjct: 866 GG-GGKDDVAQGGGTDASRLPDALDGVVAAVR 896 >gi|294786852|ref|ZP_06752106.1| alanine--tRNA ligase [Parascardovia denticolens F0305] gi|315226488|ref|ZP_07868276.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105] gi|294485685|gb|EFG33319.1| alanine--tRNA ligase [Parascardovia denticolens F0305] gi|315120620|gb|EFT83752.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105] Length = 903 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 322/929 (34%), Positives = 484/929 (52%), Gaps = 73/929 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S I F+ +F+K GH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 1 MRTSEIAKRFVTYFEKQGHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+ QKCVR D+D VG+T RH TFF+MLGNFS G YFK+ AI AWDLLT Sbjct: 60 TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSIGDYFKKEAIHYAWDLLTSPQDQG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + ++ +L++T Y +DEEA LW K G+ + + + DNFW+ GP GPC+EI+ Sbjct: 116 GYGFEKDKLWVTTYTDDEEARSLW-KTEGMDPEHMQVLGMEDNFWTTGGPGPGGPCTEIY 174 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 D+G + E RYIEIW+LVF FE N + + L +IDTGMGL Sbjct: 175 VDRGPEYGPDGGPIASES-RYIEIWDLVFENFEVDNVKSKTNLHIVGELANKNIDTGMGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+ +E+++G KY + + V RV+ DH+RS+ ++ D Sbjct: 234 ERVAYLLQGKQNIYETDEIFPVIEEAERLSGRKYGDDPEDDVRFRVVADHVRSALMIMGD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRR++RR++ ++LG + + HLLP +M +YPEL + + Sbjct: 294 GVRPSNEGRGYVLRRLIRRSIRAMKMLGVEQEVFPHLLPVSEAQMKLSYPELESSFAEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--------GKDEILNGDVAFKLYDTHGLPLDI 400 ET E+ F +TLD+G +LD +S + +++G AF L+DT+G P+++ Sbjct: 354 ETAFGEEAAFRRTLDQGSTILDVAISQAKKDASEKGQEQPVVSGKEAFTLHDTYGFPIEL 413 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIG 459 +I +G G+D SF + + EQ+ RARA +L ++ K+ +F G Sbjct: 414 TTEIAREQG-VGVDDRSFRELMAEQKQRARADALKKRHNVDLSVYDDAKKALAKPIEFTG 472 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQT 518 Y V AI+ + V A + VEV+ D+T Sbjct: 473 YKEFSSR-----------------------GTVLAIIDEETGSVRSASAPATVEVILDRT 509 Query: 519 PFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 PFYAE GGQ+ D G D L++ DVQK + ++V H + G L + +ID Sbjct: 510 PFYAEQGGQMADYGEIESDQGAVLEVDDVQKPVKDLYVQHCRLTEGSLTVGDQVSSSIDV 569 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ H+ATH+LH + +LG +Q+GS + PD LRFD SK +T +L IE Sbjct: 570 DRRIGMTHAHTATHVLHKVVREVLGEKATQSGSVVDPDRLRFDFHWSKALTQDQLGQIEA 629 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I +L V + M +DA+ GA L G KY D VRVV++ S LCGGT Sbjct: 630 RVNARIRDDLEVSWKNMPIDDALELGAMHLFGDKYGDIVRVVTIG---NDGWSRELCGGT 686 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 H S TG I ++SESS+ G+RRIEA+ G ++ + Q + + LA+ L V Sbjct: 687 HASRTGTIGSFTLISESSVGTGLRRIEALVGAKSYEYNHRQHQVINRLANGLNARADEVE 746 Query: 758 GRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVN-----FMSHIISEV-DSKE 808 RV + E ++ Q A +R++ + L + + ++ Sbjct: 747 TRVLGLEESLKEAQAKLASIYERQISAMIPALVDQAKSGSPDADLLLAIRNVGSFGSAEA 806 Query: 809 LKSVMDALQKKIQS---GIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863 L+ + + ++ ++ L G+S E K + + E A DL R + +VL Sbjct: 807 LRKAVTDTRAQLGEDKAAVVCLAGVSSETGKPVIFVATNEAARKAGIKAGDLVRSAFQVL 866 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGG GG+P AQ GG + ++ D A+ V Sbjct: 867 GGGG-GGKPDFAQGGGQDASRLDAALKIV 894 >gi|32490983|ref|NP_871237.1| hypothetical protein WGLp234 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173144|sp|Q8D2W8|SYA_WIGBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|25166189|dbj|BAC24380.1| alaS [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 873 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 317/897 (35%), Positives = 494/897 (55%), Gaps = 65/897 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL FF + H+++ SS+LIP ND TL+FTNSGM FK+IF G +KP Y Sbjct: 1 MKKTTEIRNIFLNFFYEKKHKIMDSSTLIPDNDKTLLFTNSGMNQFKDIFLGFKKPKYIR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 V T Q+C+R GGKHNDL+ +G+TNRHHTFFEMLGNFSFG YFK IQ AW+LLT K F Sbjct: 61 VATAQRCIRVGGKHNDLNMIGKTNRHHTFFEMLGNFSFGSYFKSDTIQFAWELLTSKKWF 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 DL + +L +T+Y +D E++ LW + + ++ II I DNFW+M +TGPCGP Sbjct: 121 DLSKEKLIVTIYYKDIESYNLWVEKTNINPKNIIFIKDKNNILYNSDNFWTMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 CSEIF+ G+ I E YIEIWNLVFMQF + LP SIDTGMGLE Sbjct: 181 CSEIFYFFGKSI--NYKNIKIYDEEYIEIWNLVFMQFNLHLNGKLSRLPITSIDTGMGLE 238 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R++ VLQ+ +NY IDLFK LI ++ +K + R+I DH+RS+ FLI DG++ Sbjct: 239 RISCVLQKVNSNYSIDLFKKLIYEISKIIEIK--NIKNYSLRIIADHIRSAIFLIYDGVI 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+ EGRGYVLRRI+RRA+ + + L+ M ++I+ K IE + Sbjct: 297 PSKEGRGYVLRRIIRRAIFHGNYILNKSCFFYKLVSPAINIMSYIDSKIIKKKKEIENII 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E++ F ++ +G+ + K+ IL G++AFKL+DT G P+D+ + +C + Sbjct: 357 KEEEKIFFFSIKKGM-IFLNKNLKKIKNNILKGEIAFKLHDTFGFPIDLT-NDICIKNKI 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F A+ EQ++++ +S K L Y T+F GY L+ Sbjct: 415 NVDEKGFFHAMNEQKNKSYKNSCF------NKFNLKLLNNY-CTKFCGYSYLK------- 460 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + I E ++E Q+ ++ D+TPFY E+GGQ+GD+ Sbjct: 461 ----------------CESQILNIYNLKEEIKEIKENQEGIIILDKTPFYGESGGQVGDS 504 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D +K F H+ V +GIL+ + ++ R ++S+NHS+TH Sbjct: 505 GEIKSKDGVFSVIDTKKLGNY-FYHYGKVIQGILKINNKITAYVNKIKRNKISLNHSSTH 563 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH+A++ +L ++ Q GS I L FD ++ K I ++ IE+ +N+ I N+ + + Sbjct: 564 LLHYAINCLLDKNIIQKGSLICEKYLSFDFSYGKKINIEKINEIENIINEKIRDNVIIHS 623 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ ++A+ GA AL KY D VRV+++ G S LCGGTH + TG+I I Sbjct: 624 NNMDLKNALKIGAKALFKNKYKDLVRVLNI-----GDFSIELCGGTHANRTGDIGCFVIT 678 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 + S I + RI+AITG+ A + + + + +++S +K + +V ++E+I E + L+ Sbjct: 679 NFSKISSDTYRIKAITGETAIAFIQKKFNDINTISSLIKSNSNEIVNKIEKITENLKILE 738 Query: 772 LIHAKRKLQLNVE--DLSCHKIADVNFMSHIIS----EVDSKELKSVMDALQKKIQSGII 825 + K ++ L +KI +N I+ E+D L+ +++ ++ +++GI+ Sbjct: 739 KKNKNLKNKIIKNYIKLIFNKIKKINNFEIIMDYFNEEIDKIILREILNKVKTNLKNGIV 798 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLA---RLSAKVLGGGGGGGRPHMAQSGG 879 +L I K+ ++ VT +L++ A ++ + + GGG + A++ G Sbjct: 799 ILASIKKDN-LYIVTGVTNNLVNIITAKEIISYFKEIKSI----KGGGNSYFAEAVG 850 >gi|323303022|gb|EGA56826.1| Ala1p [Saccharomyces cerevisiae FostersB] Length = 810 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 272/822 (33%), Positives = 411/822 (50%), Gaps = 66/822 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ ELK + Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648 Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 ED N+ I +NL I G A+ G Y D VRVVSV Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A ++ Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768 Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785 L + K+ + + + ++L + + + + ++ Sbjct: 769 DLDAADKLPFSPIKEK------KLKELGVKLGQLSISVITKN 804 >gi|327262296|ref|XP_003215961.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Anolis carolinensis] Length = 988 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 284/963 (29%), Positives = 443/963 (46%), Gaps = 81/963 (8%) Query: 3 NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 + + +R +F+ FFQ+ GH+++ SS + P DP L+F N+GM FK IF G P Sbjct: 36 SSARVRQSFIRFFQEKYGHQVVASSPVRPRADPGLLFVNAGMNQFKPIFLGTADPRSEMT 95 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A ++AW+LLT+ Sbjct: 96 RYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACKMAWELLTE 155 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 +++ + LY+T + DEE ++W GLS ++ DNFW M ++GP Sbjct: 156 VYEIPKDHLYVTYFGGNAALGLSADEETREIWLNQ-GLSPSHVLPFEMKDNFWEMGDSGP 214 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D ++ +EIWNLVFMQ+ ++ LP+ +DTGM Sbjct: 215 CGPCTEIHYDHIGGGRNAAAMVNKGNPDVVEIWNLVFMQYNREADGRLHQLPQHHVDTGM 274 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279 GLER+ T+LQ K +NYD DLF ++ A + + G G + +RV+ DH+ Sbjct: 275 GLERLMTILQNKRSNYDTDLFTPILDAIHKGCGGPNYQGLVGEADAGGVNMAYRVVADHV 334 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ S IADG+ P G VLR I+RRA+ + L + +L+P + +G AYP Sbjct: 335 RTLSICIADGVYPGMSGAELVLRHILRRAVRFCSEVLHAPPGFLANLVPVVVEILGDAYP 394 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + + + + F +L +G +++ L + ++ ++A+ LY G PL Sbjct: 395 ELHRDTDKVMNIISENEAAFLSSLMQGRHVINRALQQMDHSKVFPVEIAWSLYSNLGFPL 454 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D++ +L +G+ A E+ +AR+ + + + G Sbjct: 455 DLIALMLEEKGVQLDKAALDCLAQEDAERKARSQQEQSARMLLDVHSLAQLRRDG----- 509 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQ 517 S K + + V + + G + +E GQ+ V+ DQ Sbjct: 510 -----VPSTDDSFKYAYEIGKDGRYVFKQCKATVLMLYKDGSLQKEVSGGGQRCGVLLDQ 564 Query: 518 TPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G G V + +V H ++ L+ + L +D Sbjct: 565 TCFYAEQGGQAPDQGYMVCGGQQDTFFPVVSVQVSAGYVIHEVIASEALKAGDQVQLFVD 624 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 +R +NH+ATHLL+ L +LG Q GS +T + LRFDV P+ + L+ +E Sbjct: 625 EAHRMACMVNHTATHLLNFVLRQVLGESTEQCGSHVTAEHLRFDVRTQVPVKTEHLQEVE 684 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDG 686 + + +II +N V T + + L Y D V R + E +D Sbjct: 685 NVIQEIIKKNEVVCTEEVPLKLTSDIQGLRKLDDVYPDVVRVVSVGVPVKRALVRESKDA 744 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S LC GTH+ TG I I+SE + GI I A+TG++A+ K + Sbjct: 745 MHTSVELCCGTHLLRTGAIQDFTIISERQLVKGISHIIALTGEQAKKAREDGRTFAKEVE 804 Query: 747 SF-----LKVSQGNVVGRVEE---------------------IWEEYRKLQLIH--AKRK 778 S L + + R+ + + + LQ A RK Sbjct: 805 SLTIRVKLGGATIDEAQRLSKEVGYLTVTVYNTAMPHWQKRELQATLKALQRAANTAVRK 864 Query: 779 LQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 L+ + HK+ + + I+ L V++ L KI + +ML+ Sbjct: 865 LETRLAAEEAHKLLAKYSREAIIVDTIAVESPSILMKVVNQLCAKIPAASVMLLSPQTSG 924 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + V+++ L F+A D A + GG GG +A+ G N N +A+A Sbjct: 925 QVFCACQVSKNSLPTFSASDWALSVCTQM-GGKSGGSEVVAKGMG-NTNGLQRALATAQE 982 Query: 895 FLK 897 + K Sbjct: 983 YAK 985 >gi|28493343|ref|NP_787504.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist] gi|28572546|ref|NP_789326.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|41018202|sp|Q83GD1|SYA_TROWT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|41018203|sp|Q83HV0|SYA_TROW8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28410678|emb|CAD67064.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|28476384|gb|AAO44473.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist] Length = 880 Score = 641 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 297/919 (32%), Positives = 478/919 (52%), Gaps = 74/919 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S +R FL+FF K GH++ PS+SLI NDP++MFT +GM+PF F E P + V Sbjct: 1 MLTSDLRLLFLDFFAKRGHKVSPSASLI-SNDPSVMFTIAGMLPFIQCFLALEPPPHPRV 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQKC+R D+D VG+T RH TFF+M+GNFSFG YFK+ AI+ AW+ L E DL Sbjct: 60 VSVQKCIRTS----DIDEVGKTPRHGTFFQMMGNFSFGDYFKKEAIEYAWEFLLSELDLA 115 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++T++ +D+E+ K W + G+ +++ + + NFWS + GP GPCSE+F+D Sbjct: 116 PDRLWVTIHGDDKESEKFWL-LCGVPQERVQSLDS--NFWSTGKAGPAGPCSEVFYDLH- 171 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-RFILPKMSIDTGMGLERMATVLQEK 240 G PG + +RY+E+WNLVFMQ + N LPK +DTGMGLER+A + Q Sbjct: 172 --GGPGPGPEGDPDRYLEVWNLVFMQNLRDNDGHIISSLPKKCVDTGMGLERIAMITQGV 229 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 YD D K ++ + ++G +Y + + ++ RV+ DH+RSS L+ADG+ P+NEGRG Sbjct: 230 GTIYDTDELKPILDEAGYISGKRYGKDRRDDISLRVLADHIRSSLMLVADGLRPSNEGRG 289 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRR++RR++ A+LLG E L M YPEL I++ E++ F Sbjct: 290 YILRRLLRRSVRAAKLLGIQENCFDQLFAKAAQVMKVGYPELEGKLAEIKQVACLEEQSF 349 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 + L+ G LL S + ++GD+AF+L+DTHG P+D++ +I GL +D+ F Sbjct: 350 SRALNAGTQLL--SRSMSSSKKRVSGDLAFRLHDTHGFPIDLITEIAKDSGL-DVDMDGF 406 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++EQ+ R+RA ++ + + F+GY++L+ Sbjct: 407 FTLMKEQKDRSRAALSRSKPIVSDTTGYEGLR----SNFLGYEMLQ-------------- 448 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 V + + A+V+ G I+ A G V++ +QTPFYA AGGQ D G D Sbjct: 449 ---------VDTKITALVKDGTILTSAKQGDCVDIALEQTPFYATAGGQEADRGFIESDN 499 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ V G+ VH + G++ + + ++D NR +H+ATH++H + Sbjct: 500 FSGKVVTVFSPLPGLTVHRCEIVSGLVVSGEVVRASVDSANRFAACQSHTATHVIHAVVR 559 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 + GS Q GS LRFD + S T ++ +E+ N I L + + E Sbjct: 560 EMFGSTSVQMGSYNRAGYLRFDFSCSYAPTDSQRIELEERANRAIQSCLEISSTYTTLEK 619 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ASGA AL G +Y D VR+V + GG S LC GTH+ ++ EI ++ +VSE+S+ + Sbjct: 620 AVASGAIALFGERYGDTVRMVEI----GGPWSRELCAGTHLRNSSEIAVVSLVSETSVAS 675 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRR+E +TG A SH + + ++ L ++ + G ++++ E ++ + K Sbjct: 676 GIRRVECLTGFDAFSHFAQERALVDTVMRTLGATRQEMEGAIDDLRENLKRSKHALQTAK 735 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIIS-----------EVDSKELKSVMDALQKKIQS 822 + ++ V + +S E ++++++V +K ++ Sbjct: 736 DKFLSAFAPRLLQEFKSVSSVRILIADLSKFLSGPLFSPFEFTAEDIRAVTLRCKKLLEE 795 Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-------DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++L+ + + DL D +A +L ++ K L G GGGR A Sbjct: 796 PHVLLLAAVISGRVHAACSI--DLSSVKLSCMDDLSANNLIKVFLKTL-DGSGGGRADFA 852 Query: 876 QSGGPNGNKADQAIAGVAS 894 Q G N D A+ + + Sbjct: 853 QGAGWNAKLLDSALDNLKA 871 >gi|72389797|ref|XP_845193.1| alanyl-tRNA synthetase [Trypanosoma brucei TREU927] gi|62360052|gb|AAX80474.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei] gi|70801728|gb|AAZ11634.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328581|emb|CBH11559.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei gambiense DAL972] Length = 966 Score = 641 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 286/978 (29%), Positives = 453/978 (46%), Gaps = 121/978 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 V+ +R F+ FF++ GH +PSS+++P NDPTL+FTN+GM FKN+F G P Sbjct: 10 VNRVRQEFVSFFEQRGHTFVPSSAVVPHNDPTLLFTNAGMNQFKNLFLGTADPNTDFGRL 69 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI +W+LLT+ + Sbjct: 70 TRAVNSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKREAILWSWELLTEVY 129 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY T ++ DEE+ +LW ++ L A ++I DNFW M + GPCG Sbjct: 130 KLPKDRLYATYFEGDPANGIEADEESKQLWLQL--LPASRVIAGNAKDNFWEMGDVGPCG 187 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI FD+ +++ +E+WNLVFMQFE++ LPKM +DTGMGL Sbjct: 188 PCSEIHFDRI-GGRDAADLVNKDDPMVLEVWNLVFMQFERRAGGVIVPLPKMHVDTGMGL 246 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVNHRVIVDHLRSS 282 ER+ ++LQ +NYD D + L ++VTG + + V +R + DH+R Sbjct: 247 ERLTSILQGADSNYDTDAWTPLFDTIQKVTGFEKSYAEVRHDTCDATVAYRAVADHIRCL 306 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341 + +ADG +P + GRG+VLRRI+RRA+ Y LG L+ ++ + +G + + Sbjct: 307 TVALADGAMPDSVGRGFVLRRIIRRAVRYGVQFLGAKVGFFHQLVDSVVSSLGPFFKHIQ 366 Query: 342 QAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+ L E+ F +T + GL + ++ + +++G+ AF L+D +G P+D Sbjct: 367 EPRTVQRIKGVLADEETSFARTWETGLKHFNKAVAEAV-NNVISGENAFILHDRYGFPVD 425 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + +L + +D+ F+ + +A S G + I E+ A Sbjct: 426 LTS-LLAEKANMSVDLEGFHATM-----KASQLSSGRVAAAKTFIDVHQLEELKA----- 474 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----QKVE 512 + VKAI + G V+ + + + Sbjct: 475 ------------GGVSPTDDSAKYTWKKHVAEVKAIFDKKSGSFVDVLLPDSEMGPEDIG 522 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER------GILR 566 ++ D T FYAEAGGQ+ DTGC + + G VH + + Sbjct: 523 IILDVTNFYAEAGGQIYDTGCIVAAPDAIFDVRKVYNVGGYIVHVGGMRSVEDGAAAPIP 582 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRF 619 S+ L +DY+ R ++ NH++TH+L+ L + V+Q GS +TP+ LRF Sbjct: 583 VTASVELQVDYERRLPIAANHTSTHILNWCLRRVLEEEAKDNFMEVNQKGSLVTPEMLRF 642 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRV 678 D +++ ++ +L +E +N II Q L I + +G + G KY D V V Sbjct: 643 DFSYNNKVSLEDLIKVEKLINQIIQQGLEVYRKEIALDAASRIAGLRHMFGEKYPDPVSV 702 Query: 679 VSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 +SV E+ +S+ CGGTH+S+T + L I+SE S+ GIRR+ T Sbjct: 703 ISVGVPVEKLIAEPESEEWRAYSTEFCGGTHLSNTQDAQLAVILSEESLMKGIRRMVVAT 762 Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-----------------VEE-IWEEYR- 768 AR G + + + V + V+ + EE Sbjct: 763 RDAARKAQEGGKALQQEYREIMSRPASDAVAKSLSVLNKKVGDSAIPLVVKNTLREEIDG 822 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIA-----------DVNFMSHIIS-EVDSKELKSVMDAL 816 ++ + K Q + + H+ D + L++ D Sbjct: 823 SIKNVLGALKAQAAQMKEKATEAGRAAAEAYDASAGPLLVRHLTDTGADREALQAYADGF 882 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 K + + + + S E KA L+ + + + +AV A+ + G GGG+P A Sbjct: 883 SKAVSGDVGLFLVGSDESKALALVSLPPAFVAKKLDAVSWAKTAV-----GKGGGKPSAA 937 Query: 876 QSGGPNGNKADQAIAGVA 893 QSG P Q + Sbjct: 938 QSGFP-AANTTQVLQKAE 954 >gi|114663435|ref|XP_511075.2| PREDICTED: alanyl-tRNA synthetase isoform 3 [Pan troglodytes] Length = 894 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 288/859 (33%), Positives = 429/859 (49%), Gaps = 75/859 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++ +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 ++ S + + V A+ ++ VEE +GQ+ VV D+T Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I V T+ G A+ Y D VRVVS+ Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L + K Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESMKK 772 Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803 L+ +V+ + +Q A L + +I + Sbjct: 773 CLSVM--------EAKVKAQTAPNKDVQREIADLGEALA---------------TAVIPQ 809 Query: 804 VDSKELKSVMDALQKKIQS 822 EL+ + +L+K + Sbjct: 810 WQKDELRETLKSLKKVMDD 828 >gi|313221903|emb|CBY38956.1| unnamed protein product [Oikopleura dioica] Length = 934 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 289/962 (30%), Positives = 440/962 (45%), Gaps = 107/962 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + +R FL+FF++ H + SSS IP +DPTL+F N+GM FK+IF G P Sbjct: 6 TANEVRQQFLDFFKEREHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ ++DLL K Sbjct: 66 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFDLLNKV 125 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + RLY T ++ D EA + W K L AD+I+ DNFW M +TGPC Sbjct: 126 WGIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPC 183 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ +D+ + + +EIWNLVFMQ+++Q + LP S+DTGMG Sbjct: 184 GPCSELHYDRI-GGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTGMG 242 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280 LER+ +VLQ+K NYD D+F + E +TG + + + +RV+ DH R Sbjct: 243 LERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADHAR 302 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + S +ADG P N GRGYVLRRI+RRA+ Y L + L+ + +G A+PE Sbjct: 303 TLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLKMKVDDFVALVDVVVESLGDAFPE 362 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + +E L+ E +F KTLDRG +L+ + L + L GDVA+ LYDT+G PLD Sbjct: 363 LKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFPLD 422 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I L + F + ++ R++ + T Sbjct: 423 LTTLIAEEHNLT-LSCEEFEEERQKAIERSKGA-----------------DGVATTD--- 461 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + N + + V A+ E +E S + V +V D+T Sbjct: 462 ---------DSHKQNYEANSAGEYTFNSIKAKVVALRFNKEFHQECESCE-VGIVLDKTN 511 Query: 520 FYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE GGQ+ D G + + + +V H G L + L ID + Sbjct: 512 FYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAGYVLHVGTLVGKLSVGDEINLNIDTE 571 Query: 579 NRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ L +LG Q GS + P+ LRFD T + A++K +E+ Sbjct: 572 RRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQIKQVEE 631 Query: 638 NVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 N++I + V ++ + G A+ Y D VRVVS+ Sbjct: 632 ICNEVITRGGAVHCQVSPLAQSKAIQGLRAMFDETYPDPVRVVSIGVPVNELLENPTSGA 691 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTH+ L I +E +I GIRR+ A+TG A K + Sbjct: 692 ADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRMIAVTGAEAEKADRQAQRLEKDV 751 Query: 746 ASFLKVSQGNVVG--------------------------RVEEIWEEYRKLQLIHAKRKL 779 + LK + + E+ + +K ++ + + Sbjct: 752 -NELKAEVKEAIKAKNTAEANQRAISLGKTIEVAPISAWKRAELVDAVKKSKMEIVQYEQ 810 Query: 780 QLNVEDLSCHK---IADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS-KE 833 ++ ++ K DV + + + ++K L ++ KK ++L Sbjct: 811 KVEEYEIQTEKRIDAGDVAEPEVLLLDAGSNNKVLNEILKLYAKKSPKSHVLLFSADHTA 870 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 KK L + A + + ++ G GGG+ AQ+ G N ++ A+A Sbjct: 871 KKVLCLAQTPKGST--LKANEWVSSISPLI-DGRGGGKDVQAQASGKNVSELKGALAKAK 927 Query: 894 SF 895 F Sbjct: 928 EF 929 >gi|289810694|ref|ZP_06541323.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 603 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 296/637 (46%), Positives = 404/637 (63%), Gaps = 44/637 (6%) Query: 13 EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGG 72 +F GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGG Sbjct: 1 DFSYSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGG 60 Query: 73 KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVY 130 KHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F L + RL++TVY Sbjct: 61 KHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVY 120 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECI 183 + D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+EIF+D G+ I Sbjct: 121 ETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHI 180 Query: 184 PGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER+A VLQ + Sbjct: 181 WGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP+NE RGYVLR Sbjct: 241 NYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVLPSNENRGYVLR 298 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + +LG E L+ L MGSA EL + + +E+ L++E+E+F +TL Sbjct: 299 RIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTL 358 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + +D F A+ Sbjct: 359 ERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAM 416 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EEQR RAR + ++ A++F GYD L Sbjct: 417 EEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------------------ 452 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G G G Sbjct: 453 -----LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFA 507 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D QK H + G L+ ++ +D R ++ +NHSATHL+H AL +LG Sbjct: 508 VDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 +HV+Q GS ++ LRFD +H++ + +E++ +ED V Sbjct: 567 THVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLV 603 >gi|313229137|emb|CBY23722.1| unnamed protein product [Oikopleura dioica] Length = 941 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 290/970 (29%), Positives = 440/970 (45%), Gaps = 116/970 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + +R FL+FF++ H + SSS IP +DPTL+F N+GM FK+IF G P Sbjct: 6 TANEVRQQFLDFFKELEHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ +++LL K Sbjct: 66 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFELLNKV 125 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + RLY T ++ D EA + W K L AD+I+ DNFW M +TGPC Sbjct: 126 WGIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPC 183 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSE+ +D+ + + +EIWNLVFMQ+++Q + LP S+DTGMG Sbjct: 184 GPCSELHYDRI-GGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTGMG 242 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280 LER+ +VLQ+K NYD D+F + E +TG + + + +RV+ DH R Sbjct: 243 LERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADHAR 302 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + S +ADG P N GRGYVLRRI+RRA+ Y L + L+ + +G A+PE Sbjct: 303 TLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLNMKVDDFVALVDVVVESLGDAFPE 362 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + +E L+ E +F KTLDRG +L+ + L + L GDVA+ LYDT+G PLD Sbjct: 363 LKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFPLD 422 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I L + F + ++ R++ + T Sbjct: 423 LTTLIAEEHNLT-LSCEEFEEERQKAIERSKGA-----------------DGVATTD--- 461 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + N + + V A+ E +E S + V +V D+T Sbjct: 462 ---------DSHKQNYEANSAGEYTFNSIKAKVVALRFNKEFHQECESCE-VGIVLDKTN 511 Query: 520 FYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE GGQ+ D G + + + +V H G L + L ID + Sbjct: 512 FYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAGYVLHVGTLVGKLSVGDEINLNIDTE 571 Query: 579 NRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ L +LG Q GS + P+ LRFD T + A++K +E+ Sbjct: 572 RRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQIKQVEE 631 Query: 638 NVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 N++I + V ++ + G A+ Y D VRVVS+ Sbjct: 632 ICNEVITRGGAVHCQVSPLAQSKAIQGLRAMFDETYPDPVRVVSIGVPVNELLENPTSGA 691 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTH+ L I +E +I GIRR+ A+TG A K Sbjct: 692 ADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEKADRQAQRLAK-- 749 Query: 746 ASFLKVS-----QGNVVGRVE-----------------------------EIWEEYRKLQ 771 A+ LK + V ++ E+ + +K + Sbjct: 750 ANQLKEKDVNELKAEVKEAIKAKNTAEANQRAISLGKTIEVAPISAWKRAELVDAVKKSK 809 Query: 772 LIHAKRKLQLNVEDLSCHK---IADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + + ++ + K DV + + + ++K L ++ KK ++ Sbjct: 810 MEIVQYEQKVEEYGIQTEKRIDAGDVAEPEVLLLDAGSNNKVLNEILKLYAKKSPKSHVL 869 Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L KK L + A + + ++ G GGG+ AQ+ G N + Sbjct: 870 LFSADHTAKKVLCLAQTPKGST--LKANEWVSSISPLI-DGRGGGKDVQAQASGKNVSGL 926 Query: 886 DQAIAGVASF 895 A+A F Sbjct: 927 KGALAKAKEF 936 >gi|296126160|ref|YP_003633412.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563] gi|296017976|gb|ADG71213.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563] Length = 857 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 298/885 (33%), Positives = 467/885 (52%), Gaps = 59/885 (6%) Query: 20 HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79 H + SSSLIP +DPTL+FT +GM+ FK + G +K Y V T+QKC R DL+N Sbjct: 19 HVIEKSSSLIPIDDPTLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRLS----DLEN 74 Query: 80 VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138 +G+T RHHTFFEM GNF F G YFK+ AI+ AW+ T+ L R+Y+++Y++D++AFK Sbjct: 75 IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134 Query: 139 LWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195 +W + G+ +KI+R+ DNFW ++G CGPCSE++ D GE G P + E Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 RY+E WNLVF +F Q L + IDTGMGLER+ ++Q +NY D+ K ++ A Sbjct: 195 RYLEFWNLVFNEFFQDTDGNLSPLQNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 + +KYE N +I DHLR+ F++A+G +P+NEGRGYVLRR++RRA+ + L Sbjct: 255 IIKKLNVKYEDKNKTKINLIADHLRALVFVLAEGCVPSNEGRGYVLRRLLRRALKTSSDL 314 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G+ + L A+ Y L + + I+ L+ E+ +F T+ G+ L V+ Sbjct: 315 GHKGAFLNELTGAVIDVYKDIYDYLPKEEENIKRILKDEENKFLNTISAGMNKLYSVMED 374 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 +++ G AF L+DT+GLP DI ++ G +D F +A+EEQ+ R+R Sbjct: 375 NKDSKVIKGSDAFMLFDTYGLPFDITEEEANDHGFT-VDRAGFEEAMEEQKKRSRGTGED 433 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 S F T+++G + +LTNGV + V ++ Sbjct: 434 KKSKFGYVANFD-------TKYVG-------------------EDLNNLTNGVKAKVISV 467 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555 + +V D +PFY E GGQ+GD G + +K E + Sbjct: 468 YNDNTV-----------IVTDVSPFYGEMGGQVGDNGYIETSDKQTIKVTDTQKKENTII 516 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H + + L ++ R + NH+ATH+L L LG+HV+Q GS + D Sbjct: 517 HILENNNHSFKEGEEITLFVNADRRMAIRKNHTATHILQRVLELTLGNHVNQAGSYVCED 576 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675 LRFD TH I+ L +IE+ VN+++ +++P V + M++E+AI+SGA AL G KY D Sbjct: 577 YLRFDFTHPDSISEETLLNIENKVNEVVFKSMPAVIKYMSKEEAISSGAKALFGEKYPDT 636 Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 VR++ + S LCGG+H+++T E+ +IVSE S +G+RRIEAITG +A + Sbjct: 637 VRILDIGD----GFSVELCGGSHLTNTSEVGYFHIVSEGSAASGVRRIEAITGLKAANEA 692 Query: 736 MGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED---LSCHKI 791 K+K+LA L + R E + E +KLQ + K + + Sbjct: 693 TKLFSKVKNLAHILNASKIEEITIRAENLQNEVKKLQKDIKQLKTSGASVTSFMDNYEDL 752 Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DR 849 + F + +E D KE++ D ++++++ I +++ + S+L+ +T + + Sbjct: 753 GGIRFYNLEFNE-DIKEVRLYADTIKERVKDSIAVMIS-KTDSSNSILVQLTGSAVKEKK 810 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +A ++ + K GG GGG+ AQ N +KA + I + S Sbjct: 811 LSANNIIKDIIKT-AGGRGGGKDTFAQGSIENIDKAKEEINKLKS 854 >gi|300870855|ref|YP_003785726.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000] gi|300688554|gb|ADK31225.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000] Length = 864 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 308/887 (34%), Positives = 469/887 (52%), Gaps = 51/887 (5%) Query: 20 HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79 H + SSSLIP +DP+L+FT +GM+ FK + G +K Y V T+QKC R DL+N Sbjct: 19 HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRLS----DLEN 74 Query: 80 VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138 +G+T RHHTFFEM GNF F G YFK+ AI+ AW+ T+ L R+Y+++Y++D++AFK Sbjct: 75 IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPVERIYVSIYEKDDDAFK 134 Query: 139 LWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195 +W + G+ +KI+R+ DNFW ++G CGPCSE++ D GE G P + E Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 RY+E WNLVF +F Q L + IDTGMGLER+ ++Q +NY D+ K ++ A Sbjct: 195 RYLEFWNLVFNEFFQDVDGNLTPLKNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 +KYEGNN ++ DHLR+ F++A+G P+NEGRGYVLRR++RRA+ A L Sbjct: 255 ILNKLNVKYEGNNKTKINLLADHLRALVFVLAEGCKPSNEGRGYVLRRLLRRALKTANDL 314 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G+ + L A+ Y L + + I++ L+ E+ +F T+ G+ L V+ Sbjct: 315 GHKGAFLNELTSAVINVYKDIYDYLPKEEENIKKILKEEENKFLSTISAGMNKLYNVMEE 374 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 + ++++G AF L+DT+GLP DI ++ G +D F A+EEQ+ R+R Sbjct: 375 NKESKVISGKDAFMLFDTYGLPFDITEEEANDHGFT-VDKKGFEDAMEEQKKRSRG---- 429 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 G D F++ + L NG+ S + A+ Sbjct: 430 ----------------------TGEDKKSKFGFVENYETKYVGEDRDSLINGIKSKIVAL 467 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555 + GE E A S V V+ + +PFY E GGQ+GD G +K E + Sbjct: 468 YENGEKKESASS-SNVAVITESSPFYGEMGGQVGDNGFIEISSGEKLKVLDTQKKENTII 526 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H L+ + L +++ R + NH+ATH+L L LG+H++Q GS + D Sbjct: 527 HIVDCGNKTLKVGEEIKLIVNFDRRSAIRKNHTATHILQKVLELTLGNHINQAGSFVCED 586 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675 LRFD TH I L +IE+ VN+I+ +++P V + M +E+AIASGA AL G KY D Sbjct: 587 YLRFDFTHPDSINEETLINIENKVNEIVFKSMPAVIKYMPKEEAIASGAKALFGEKYPDT 646 Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 VR++ + S LCGG+H+++T E+ +IVSE S+ +G+RRIEAITG A Sbjct: 647 VRILDIGE----GFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLNAAREA 702 Query: 736 MGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---SCHKI 791 K+KSL+ L + + R E + E +KLQ + + K + +C + Sbjct: 703 TNLFNKVKSLSHILNANKIDELTTRAENLQTEIKKLQKENKQLKTSGSSSKAFIDNCEDL 762 Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 + F + E D K+++ D ++++++ I ++ + S+++ VT L N Sbjct: 763 NGIKFYNLEFDE-DIKDIRLYADTIKERVKDSIAFMISKTNN---SIIVQVTGKALKEKN 818 Query: 852 --AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A L + GG G GG+ AQ N KA +AI + S L Sbjct: 819 ILANSLIKDIIAAAGGRG-GGKDSFAQGSIENIEKAKEAINKIKSSL 864 >gi|322491846|emb|CBZ27119.1| putative alanyl-tRNA synthetase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 962 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 271/982 (27%), Positives = 455/982 (46%), Gaps = 121/982 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 VS +R F+++F+K GH +P S + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQEFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ D+ EA +LW + L +I+ DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDKNNGLNPDLEAKELWAQF--LPESQIVPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ +++ +EIWNLVFMQFE++ LP+ IDTGMGL Sbjct: 186 PCSEVHFDRI-GGRNAASFVNKDDPMVVEIWNLVFMQFERRADGFLTPLPQKHIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281 ER+ ++LQ +NYD D + L +A + TG I N +RV+ DH+R Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNNPDSDALVAYRVVADHIRC 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 + + DG++P + GRG+VLRRI+RRA+ Y LG L+ ++CT +G +P L Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364 Query: 341 IQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396 + + + I+ L E++ F KT + GL + ++ ++++G AF L+D +G Sbjct: 365 KEPRNIQRIKAVLADEEQSFAKTWEMGLRHFNHAVNECRANNSKVISGSEAFVLHDRYGF 424 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + G+ +D+ FN + ++ + + + T + L+E Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM----KESKVSAGRVAATKTFIDAYQLEE------ 473 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509 +K + + V AI + + + G + Sbjct: 474 ------------LKTRGIPQTDDVAKYVWEDSTGDVLAIFDKKNSKFISLLEPGNDLGAE 521 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566 V ++ + T FYAE+GGQ+ DTG + + G VH + + + Sbjct: 522 GVGIILNTTNFYAESGGQVYDTGRLVAGSDSVFEVKKVYNVAGYVVHVGSLSKDSASPIP 581 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620 + + +DY+ R ++ NH+ TH L+ L + + V Q GS +T + LRFD Sbjct: 582 LSAVVQMQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 ++S +++ EL +E +N+ I LP + + +G + G KY D V V+ Sbjct: 642 FSYSTKLSNEELVRVEQLLNEKIQAGLPVYREEVPLEAASKINGLRQMFGEKYPDPVSVI 701 Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ + ++ CGGTH+ + E I+SE ++ G+RR+ T Sbjct: 702 SIGTPINEMLTNPEKEEWRDYAVEFCGGTHLKNLKEADKAVIISEEALMKGVRRVVVATK 761 Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759 A LM ++ S+ + LK + N+ Sbjct: 762 SEADKVIKAGTELKGQYDELMQKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDAA 821 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817 ++ + + + + + + A F+ H ++ + + L++ D Sbjct: 822 IKRMNAILKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFS 881 Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + L+G EK +++ + + + +AV A+ S G GGG+P AQ Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPSAAQ 936 Query: 877 SG--GPNGNKAD-QAIAGVASF 895 SG + A +A+ Sbjct: 937 SGLPAKDVAAAATKAMEEAERM 958 >gi|294053724|ref|YP_003547382.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221] gi|293613057|gb|ADE53212.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221] Length = 941 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 303/972 (31%), Positives = 459/972 (47%), Gaps = 134/972 (13%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--Q 59 S IR +FL+FF+ H +PS+SL+P + P L+FTN+GM F F G EK + Sbjct: 5 MKSSEIRQSFLDFFKSKQHTTVPSASLMPQS-PGLLFTNAGMNQFVPYFLGTEKAPFDPP 63 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG YFK+ AI+ +W+L+ + + Sbjct: 64 RAADTQKCIRAGGKHNDLEDVGYDTYHHTFFEMLGNWSFGNYFKQEAIEWSWELIVETWG 123 Query: 120 LDQRRLYITVYDE--------DEEAFKLWK---KISGLSAD-KIIRITTNDNFWSMAETG 167 + RLY TVY D+EA+ +W + +GL II DNFW M ETG Sbjct: 124 VPANRLYATVYAPSEGDPSAFDQEAYDIWSVLFEKAGLDPKVHIINGNVKDNFWMMGETG 183 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSE+ D + + + IEIWNLVF+Q+ + LP +DTG Sbjct: 184 PCGPCSELHVDLTPKGDSQGKLVNMDSDLCIEIWNLVFIQYNAEADGSFRDLPAKHVDTG 243 Query: 228 MGLERMATVLQE---------KTNNYDIDLFKHLIQASEQVTGMKYE------------- 265 MG ER +++Q K NY D+F+ + + EQ++G Y+ Sbjct: 244 MGFERACSLIQNTKGFTDFSEKPTNYATDVFQPIFRTLEQLSGKTYKDIYPEAADCDKSK 303 Query: 266 ----GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--E 319 + RVI DH+R+ SF +ADGIL N GR YVLRRI+RRA+ Y R LG++ E Sbjct: 304 LSQEMKEAIAFRVIADHIRTLSFSLADGILLGNTGRNYVLRRILRRAVRYGRTLGFSSGE 363 Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379 + L+ L E GS +PEL + ++E L+ E+ F +TLDRGL + + + Sbjct: 364 TFLPKLVDTLVEEFGSVFPELKERAKAVKENLQREEASFNETLDRGLAMFEDEAAKTKGS 423 Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439 L+G+ AFKLYDT+G P+D+ Q + RG +D+ +F + +E QR RARA Sbjct: 424 --LDGEFAFKLYDTYGFPIDLTQLLCAERG-IEVDMETFEKHMEAQRERARAARTQQLVR 480 Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 + +T+F G++ ++ V + Sbjct: 481 AAD------IATEASTEFTGFEEDES-----------------------TAKVLELH--- 508 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 + V+ D+TPFY E GGQLGD G +G +T VQ+ + H++ Sbjct: 509 ------TQDDALLVITDRTPFYVEMGGQLGDQGTLTVNGTTYPVTAVQQLSAAR--AHSL 560 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 ++ + L +D RR + +H+ATHLLH AL ++ + +Q GS ++ LRF Sbjct: 561 PTDAAVKVGDEVTLALDPTRRRPIEGHHTATHLLHWALHEVVSTDAAQQGSMVSRTRLRF 620 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRV 678 D S ++ +L +IE VN I PV + + D G KY D VRV Sbjct: 621 DFN-SSALSQDQLDAIETKVNACIEAGDPVSWKEVPHTDVKDRKDVQQFFGDKYGDLVRV 679 Query: 679 VSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736 V + + +S LCGGTHV +T +I L I SE +I +GIRRIEA+ G A Sbjct: 680 VQIGGQPEQLDGYSMELCGGTHVRNTKDIGLFKIKSEGAIASGIRRIEAVCGTAAYDWTR 739 Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYR---------------KLQLIHAKRKLQ 780 EK L+ + ++E + + + + + K Sbjct: 740 SVVEKANIEREELRTKLEGINQKLEALGADSIKYPQFPHIMIGMLAEGNFEQRNKVFKDT 799 Query: 781 LN-VEDLSCHKIA------------------------DVNFMSHIISEVDSKELKSVMDA 815 L V+ L + D++ + +E + L+ +++ Sbjct: 800 LAHVQGLKEATVEADKALKKAQAAGAAKMANAILAEQDLSGNLVLKAEGPAALLQELING 859 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874 L+++ +G + + ++ + + E + A L + A + GG GGG+P M Sbjct: 860 LKQQQFAGAAFFI-VDDGERLHLGALCGETAKGNGLMAGKLIQQLAP-IAGGKGGGKPDM 917 Query: 875 AQSGGPNGNKAD 886 A+ P +KAD Sbjct: 918 ARGAAPERDKAD 929 >gi|157869507|ref|XP_001683305.1| alanyl-tRNA synthetase [Leishmania major strain Friedlin] gi|68224189|emb|CAJ04856.1| putative alanyl-tRNA synthetase [Leishmania major strain Friedlin] Length = 962 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 274/962 (28%), Positives = 455/962 (47%), Gaps = 118/962 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 VS +R F+++F+K GH +PSS + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ DE EA +LW ++ L +I+ DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDESNGLDPDLEAKELWGQL--LPESQIVPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ +++ +EIWNLVFMQFE++ LP+ IDTGMGL Sbjct: 186 PCSEVHFDRI-GRRNAASLVNKDDPMVVEIWNLVFMQFERRAGGFLTPLPQKHIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281 ER+ ++LQ +NYD D + L +A + TG I N +RV+ DH+R Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIRC 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 + + DG++P + GRG+VLRRI+RRA+ Y LG L+ ++CT +G +P L Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364 Query: 341 IQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396 + + + I+ L E++ F KT + GL + ++ ++++G AF L+D +G Sbjct: 365 KEPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAVNECRANSSKVISGSEAFVLHDRYGF 424 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + G+ +D+ FN + ++ + + + T + L+E Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNTEM----KESKVSAGRVAATKTFIDAYQLEE------ 473 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509 +K + + V AI + + + G + Sbjct: 474 ------------LKTRGIPQTNDAAKYVWEDYTGDVLAIFDKKNSKFISLLEPGNDLGAE 521 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI---VERGILR 566 V ++ T FYAE+GGQ+ DTG + + G VH + Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKAYNVAGYVVHVGNLSKYSASPIP 581 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620 + + L +DY+ R ++ NH+ TH L+ L + + V Q GS +T + LRFD Sbjct: 582 SSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQN-LPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 +++ +++ +L +E +N+ I L + + +G + G KY D V V+ Sbjct: 642 FSYNTKLSNEDLVRVEQLLNEKIQAGLLVYREEVPLEAASKINGLRQMFGEKYPDPVSVI 701 Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ + ++ CGGTH+ + E I+SE ++ G+RR+ T Sbjct: 702 SIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATR 761 Query: 729 QRARSHL-------MGQDEKLKSLASFLKVSQGNVVGR-VEE------IWEEYRK----- 769 A + DE +K A+ V +V+ + V + + E R+ Sbjct: 762 LEADKVIKAGAELKRQYDELMKKEATATSVKALSVLNKNVGDSCIPLVLKNEMRENIDAA 821 Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIIS--EVDSKELKSVMDALQ 817 ++ ++A K Q + F+ H ++ + + L++ D Sbjct: 822 IKRMNATLKSQAAEARDKAAEAGKCLGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFS 881 Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + L+G EK +++ + + + +AV A+ S G GGG+P+ AQ Sbjct: 882 STVSGPVGVFLIGSDNEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPNAAQ 936 Query: 877 SG 878 SG Sbjct: 937 SG 938 >gi|146086823|ref|XP_001465654.1| alanyl-tRNA synthetase [Leishmania infantum JPCM5] gi|134069753|emb|CAM68079.1| putative alanyl-tRNA synthetase [Leishmania infantum JPCM5] gi|322499108|emb|CBZ34180.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 962 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 269/962 (27%), Positives = 452/962 (46%), Gaps = 118/962 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 VS +R F+++F+K GH +PSS + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ DE EA +LW + L +I+ DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDENNGLDPDLEAKELWGQF--LPESQIVPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ +++ +EIWNLVFMQFE++ LP+ IDTGMGL Sbjct: 186 PCSEVHFDRI-GGRNAASLVNKDDPMVVEIWNLVFMQFERRAGGSLTPLPQKHIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281 ER+ ++LQ +NYD D + L +A + TG I N +RV+ DH+R Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIRC 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 + + DG++P + GRG+VLRRI+RRA+ Y LG L+ ++CT +G +P L Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364 Query: 341 IQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396 + + + I+ L E++ F KT + GL + ++ ++++G AF L+D +G Sbjct: 365 KEPRNIQRIKTVLADEEQSFAKTWEMGLKHFNHAVNECRANNSKVISGSEAFVLHDRYGF 424 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + G+ +D+ FN + ++ + + + T + L+E Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM----KESKVSAGRVAATKTFIDAYQLEE------ 473 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509 +K + + + AI + + + G + Sbjct: 474 ------------LKTRGIPQTDDAAKYVWEDSTGDLLAIFDKKNSKFISLLEPGNDLGAE 521 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566 V ++ T FYAE+GGQ+ DTG + + G VH + + + Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKVYNVAGYVVHVGNLSKDSASSIP 581 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620 + + L +DY+ R ++ NH+ TH L+ L + + V Q GS +T + LRFD Sbjct: 582 SSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 +++ +++ +L +E +N+ I LP + + +G + G KY D V V+ Sbjct: 642 FSYNTKLSNEDLVRVERLLNEKIQAGLPVYREEVPLEAASKINGLRHMFGEKYPDPVSVI 701 Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ + ++ CGGTH+ + E I+SE ++ G+RR+ T Sbjct: 702 SIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATK 761 Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759 A LM ++ S+ + LK + N+ Sbjct: 762 SEADKVIKAGAVLKGQYDELMKKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDAA 821 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817 ++ + + + + + + A F+ H ++ + + L++ D Sbjct: 822 IKRMNATLKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFT 881 Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + L+G EK +++ + + + +AV A+ S G GGG+P+ AQ Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPAAFVERKMSAVAWAKSSI-----GKGGGKPNAAQ 936 Query: 877 SG 878 SG Sbjct: 937 SG 938 >gi|297737925|emb|CBI27126.3| unnamed protein product [Vitis vinifera] Length = 1026 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 298/1029 (28%), Positives = 443/1029 (43%), Gaps = 158/1029 (15%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 + +R TF+ FF+ H SS ++P NDPTL+F N+GM FK IF G P Sbjct: 13 ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 72 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK Sbjct: 73 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKAK 132 Query: 117 --EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 + L R+Y T + DE EA +W K L ++ DNFW M +T Sbjct: 133 NLVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDT 190 Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCGPC+EI FD+ + + IEIWNLVF+QF +++ LP +DT Sbjct: 191 GPCGPCTEIHFDRIGNRDA-ASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDT 249 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVD 277 GMG ER+ ++LQ K +NYD D+F + A +Q TG + + +RV+ D Sbjct: 250 GMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVAD 309 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTE---- 332 H+R+ SF IADG P NEGR YVLRRI+RRA+ Y L E + + Sbjct: 310 HIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDV 369 Query: 333 --------------------------MGSAYPELIQAKLLIEETLRSED-------ERFG 359 + A+ + + L ++ F Sbjct: 370 FPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQGKILNGQEFYNIQVFTNFI 429 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNG-----------------------------DVAFKL 390 + + +G +G AF L Sbjct: 430 HDSQKCCNHFKEIFLWVGGAFWPSGSVEVVHFSDILMLFQDVEDGNKLVSLMIIKDAFVL 489 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ Q + RGL +D+ FN AL+E R R+R+ GT Sbjct: 490 WDTYGFPLDLTQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGTIVM------- 541 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 D S K S++KAI E +E A +G + Sbjct: 542 ----------DADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNE 591 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-FVHHAIVERGILRTEM 569 V +V + T FYAE GGQ+ DTG G Q+ +VQ I + G Sbjct: 592 VGIVLETTSFYAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGD 651 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY R+ ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KP+ Sbjct: 652 KVICKVDYDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHP 711 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------ 682 L+ IE VN+ I L V ++ + DA + +G A+ G Y D VRVVS+ Sbjct: 712 DHLRKIESIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDL 771 Query: 683 -----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 E S+ LCGGTH+S+T E ++SE I GIRRI A+T A + Sbjct: 772 LADPGNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIEL 831 Query: 738 QDEKLKSLASFLK------------------------VSQGNVVGRVEEIWEEYRKLQLI 773 + + K + ++ ++ + ++ RK Q Sbjct: 832 ARSLEQEVDDASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKK 891 Query: 774 HAKRKLQLNVED----LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV 828 A+ +Q V+ F + +D+ ++ + + ++ +++ Sbjct: 892 FAEENIQKAVKAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFS 951 Query: 829 GISKEKKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 KA V V + D + + + L G G G+ +AQ G + + Sbjct: 952 TDETTNKAVVYAGVPQKGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVK 1011 Query: 887 QAIAGVASF 895 +A+ +F Sbjct: 1012 EAMDVAENF 1020 >gi|322829672|gb|EFZ32980.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 959 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 290/982 (29%), Positives = 457/982 (46%), Gaps = 122/982 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 V+ +R FL+FF++ GH+ +PSS ++P NDPTL+F N+GM FKN+F G P Sbjct: 6 VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI+ AW+LLT+ + Sbjct: 66 TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T ++ DEEA +LW ++ + + +I DNFW M + GPCG Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ ++E IEIWNLVFMQFE+ LPKM +DTGMGL Sbjct: 184 PCSEVHFDRL-GGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTGMGL 242 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------NHRVIVDHLRS 281 ER+ +++Q +NYD D + L +A + VTG + I +RVI DH+R Sbjct: 243 ERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 S +ADG +P + GRG+VLRRI+RRA+ Y LG L+ A+ +G + + Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362 Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 + I+ L E+ F KT D GL + ++ D ++GD AF L+D +G P+ Sbjct: 363 QDPRTVQRIKTVLADEEASFSKTWDVGLKHFNKAVADAV-DNTISGDNAFILHDRYGFPV 421 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + GL +D+ F+ ++ + A G K + + + Sbjct: 422 DLTCLLAEKAGLR-VDMNGFHATMKANQLSA-------GRVAAAKTFLDVHQL------- 466 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512 + +K+ + + ++ VKAI + G V+ + G++ E Sbjct: 467 --------EELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRT 567 ++ D T FYAE+GGQ+ DTG + + G VH + + Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVKKVYNLGGYVVHLGRMMTTNSTAVPIPV 578 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRFD 620 S+ L +DY+ R ++ NHS TH+L+ L + V Q GS +T + LRFD Sbjct: 579 TSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPESYMEVQQKGSLVTEEMLRFD 638 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679 +++ ++ +L IE +N+ I Q L V + + E A G + G KY D V V+ Sbjct: 639 FSYNSRVSQEDLAKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSVI 698 Query: 680 SVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE---- 724 SV + ++ CGGTH+S+ E + I+SE ++ G+RRI Sbjct: 699 SVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRIVVATR 758 Query: 725 -------------------AITGQRARSHLMGQDEKLKSLASFL------KVSQGNVVGR 759 + G S K + L + + G Sbjct: 759 DAARKARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDGS 818 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817 V + + ++ + + + F +S+ + + L++ D Sbjct: 819 VRAALANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGFT 878 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +Q + + + + KA L+ + + + +AVD A+ + G GGG+PH AQ Sbjct: 879 NAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAAQ 933 Query: 877 SGGPNGN---KADQAIAGVASF 895 SG + ++A+A A Sbjct: 934 SGLTAADVDVAMEKALAEAAKM 955 >gi|157886445|emb|CAP09517.1| novel protein similar to vertebrate alanyl-tRNA synthetase like (AARSL) [Danio rerio] Length = 996 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 297/964 (30%), Positives = 441/964 (45%), Gaps = 83/964 (8%) Query: 3 NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +R F++FF++ GH ++PSSS+ P DP+L+F N+GM FK I G P Sbjct: 35 TSKRVRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMV 94 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKCVRAGGKHNDL +VG+ HHTFFEMLGN+SFG YFK A +AW LLT+ Sbjct: 95 SYRRVVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTE 154 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 E+ + +RLY++ + DEE +W GL AD ++ DNFW M ETGP Sbjct: 155 EYGIPAQRLYVSYFSGDPANGLPADEETRDIWLS-MGLRADHVLPFGMKDNFWEMGETGP 213 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D L + + +EIWNLVFMQ+ +++ LP+ S+DTGM Sbjct: 214 CGPCTEIHYDHIGNRNAAL-LVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGM 272 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ TVLQ K +NYD DLF L+ A Q + + +RV+ DH+ Sbjct: 273 GLERLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHI 332 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ IADG+ P G VLRRI+RRA+ ++ L E + L+P + +G AYP Sbjct: 333 RTICVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYP 392 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397 EL I + + + F +L +G ++D LS++ ++ VA+ LY G P Sbjct: 393 ELNTESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFP 452 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 LD++ +L +G +D +E G + SL E Sbjct: 453 LDLIDLMLEEKGKI-VDKKEMKVLEDEYEKLGLQSEEDEGEKLDQLDLHSLAELQR---- 507 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + + V A+ G +V E GQ V+ DQ Sbjct: 508 ----QRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 563 Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G DG + + G +V H + LRT + L +D Sbjct: 564 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 623 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R INH+ATH+L+ AL +LG VSQ GS + + LRFD + +T +EL+ +E Sbjct: 624 EAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQKVE 683 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEYEDGGV 688 + V +II QN V + A + Y D VRVVS + E Sbjct: 684 ELVLNIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQ 743 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKL 742 S LC GTH+ TG I +VSE + G+ RI A TG A L + E L Sbjct: 744 TSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESL 803 Query: 743 KS---LASFLKVSQGN-VVGRVEEIWE--------EYRKLQLI-----------HAKRKL 779 ++ L++ L + + + V + ++++L+L ++ RKL Sbjct: 804 EARMGLSNTLSIQEAKRLSKEVGHLINAVDITPMPQWKRLELQTRLKAMLKSSNNSIRKL 863 Query: 780 QLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG-ISKEK 834 ++ L ++ ++ + +I L + L K ++ML Sbjct: 864 EIKEAALKAKELLDKHSNKPVVVDLIQTDSISVLMKTVVQLSKSTPKSLVMLFSHWESSG 923 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K +V + +A++ A L GG G A+ G N K + +A + Sbjct: 924 KLLCACLVPKGSTGG-SAIEWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILH 979 Query: 895 FLKK 898 + ++ Sbjct: 980 WAEE 983 >gi|326678670|ref|XP_001332388.4| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Danio rerio] Length = 1001 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 297/964 (30%), Positives = 441/964 (45%), Gaps = 83/964 (8%) Query: 3 NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +R F++FF++ GH ++PSSS+ P DP+L+F N+GM FK I G P Sbjct: 40 TSKRVRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMV 99 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKCVRAGGKHNDL +VG+ HHTFFEMLGN+SFG YFK A +AW LLT+ Sbjct: 100 SYRRVVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTE 159 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 E+ + +RLY++ + DEE +W GL AD ++ DNFW M ETGP Sbjct: 160 EYGIPAQRLYVSYFSGDPANGLPADEETRDIWLS-MGLRADHVLPFGMKDNFWEMGETGP 218 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D L + + +EIWNLVFMQ+ +++ LP+ S+DTGM Sbjct: 219 CGPCTEIHYDHIGNRNAAL-LVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGM 277 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ TVLQ K +NYD DLF L+ A Q + + +RV+ DH+ Sbjct: 278 GLERLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHI 337 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ IADG+ P G VLRRI+RRA+ ++ L E + L+P + +G AYP Sbjct: 338 RTICVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYP 397 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397 EL I + + + F +L +G ++D LS++ ++ VA+ LY G P Sbjct: 398 ELNTESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFP 457 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 LD++ +L +G +D +E G + SL E Sbjct: 458 LDLIDLMLEEKGKI-VDKKEMKVLEDEYEKLGLQSEEDEGEKLDQLDLHSLAELQR---- 512 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + + V A+ G +V E GQ V+ DQ Sbjct: 513 ----QRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 568 Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G DG + + G +V H + LRT + L +D Sbjct: 569 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 628 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R INH+ATH+L+ AL +LG VSQ GS + + LRFD + +T +EL+ +E Sbjct: 629 EAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQKVE 688 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEYEDGGV 688 + V +II QN V + A + Y D VRVVS + E Sbjct: 689 ELVLNIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQ 748 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKL 742 S LC GTH+ TG I +VSE + G+ RI A TG A L + E L Sbjct: 749 TSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESL 808 Query: 743 KS---LASFLKVSQGN-VVGRVEEIWE--------EYRKLQLI-----------HAKRKL 779 ++ L++ L + + + V + ++++L+L ++ RKL Sbjct: 809 EARMGLSNTLSIQEAKRLSKEVGHLINAVDITPMPQWKRLELQTRLKAMLKSSNNSIRKL 868 Query: 780 QLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG-ISKEK 834 ++ L ++ ++ + +I L + L K ++ML Sbjct: 869 EIKEAALKAKELLDKHSNKPVVVDLIQTDSISVLMKTVVQLSKSTPKSLVMLFSHWESSG 928 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K +V + +A++ A L GG G A+ G N K + +A + Sbjct: 929 KLLCACLVPKGSTGG-SAIEWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILH 984 Query: 895 FLKK 898 + ++ Sbjct: 985 WAEE 988 >gi|71416315|ref|XP_810193.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] gi|70874690|gb|EAN88342.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 959 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 288/982 (29%), Positives = 454/982 (46%), Gaps = 122/982 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 V+ +R FL+FF++ GH+ +PSS ++P NDPTL+F N+GM FKN+F G P Sbjct: 6 VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI+ AW+LLT+ + Sbjct: 66 TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T ++ DEEA +LW ++ + + +I DNFW M + GPCG Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ ++E IEIWNLVFMQFE+ LPKM +DTGMGL Sbjct: 184 PCSEVHFDRL-GGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTGMGL 242 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------NHRVIVDHLRS 281 ER+ +++Q +NYD D + L +A + VTG + I +RVI DH+R Sbjct: 243 ERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 S +ADG +P + GRG+VLRRI+RRA+ Y LG L+ A+ +G + + Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362 Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 + I+ L E+ F KT D GL + ++ D ++GD AF L+D +G P+ Sbjct: 363 QDPRTVQRIKTVLADEEASFAKTWDVGLKHFNKAVADAV-DNTISGDNAFILHDRYGFPV 421 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + GL + + +A+ L G K + + + Sbjct: 422 DLTCLLAENAGLRVD--------MNGFHAAMKANQLSAGRVAAAKTFLDVHQL------- 466 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512 + +K+ + + ++ VKAI + G V+ + G++ E Sbjct: 467 --------EELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRT 567 ++ D T FYAE+GGQ+ DTG + + G VH + + Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVRKVYNLGGYVVHLGRMMTTNSTAVPIPV 578 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRFD 620 S+ L +DY+ R ++ NHS TH+L+ L + V Q GS +T + LRFD Sbjct: 579 TSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEEMLRFD 638 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679 +++ ++ +L IE +N+ I Q L V + + E A G + G KY D V V+ Sbjct: 639 FSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSVI 698 Query: 680 SVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE---- 724 SV + ++ CGGTH+S+ E + I+SE ++ G+RRI Sbjct: 699 SVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKESEVAVILSEEALMKGVRRIVVATR 758 Query: 725 -------------------AITGQRARSHLMGQDEKLKSLASFL------KVSQGNVVGR 759 + G S K + L + + G Sbjct: 759 DAARKARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDGS 818 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817 + + + ++ + + + F +S+ + + L++ D Sbjct: 819 IRAALANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGFT 878 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +Q + + + + KA L+ + + + +AVD A+ + G GGG+PH AQ Sbjct: 879 NAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAAQ 933 Query: 877 SGGPNGN---KADQAIAGVASF 895 SG + ++A+A A Sbjct: 934 SGLTAADVDVAMEKALAEAAKM 955 >gi|42560730|ref|NP_975181.1| alanyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|48428509|sp|P61704|SYA_MYCMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|42492226|emb|CAE76823.1| alanine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321137|gb|ADK69780.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 896 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 286/934 (30%), Positives = 469/934 (50%), Gaps = 100/934 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF H L + SLIP +DP+L++ NSG+ K F G++ P Sbjct: 1 MKKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT K Sbjct: 61 PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF Sbjct: 117 YFDIDKNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175 Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE I L E +RYIE+WN+VF QF LP+ +IDTG GLE Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDH 278 R A++ Q N++ D+F I+ EQ+ KY +N N +VI DH Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADH 295 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R++ F I+DG+ P N+ RGY++RR++RR+ + + LG + + L+ ++ M YP Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYP 355 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 LI K L+E+T++ E+E+F KTL +G LL+ ++ ++ A L++++G P+ Sbjct: 356 YLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + +I +D+ F + LE+ + R L + + F+ + ++F Sbjct: 413 EQTIEIS-ELSNVTVDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G+ ++ V + + VE Q+V V+ D+T Sbjct: 470 GWSETSRD----------------------NAKVIYMFTDQKQVESIT-NQEVFVILDKT 506 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G D ++ + DVQ+ + H I +G L+ + +D + Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNI-HRIKVQGTLKVNDLINCRVDEE 565 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHS TH++H+AL +LG+ V Q+GS +GLR D T+ + T+ EL ++ Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625 Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V + I + T + E+++ A A KY+ VRV+ G SS LCGGT Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGT 680 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS--------- 747 HV++T EI I S +G+ RI+ +T RA +L Q + K A Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKVYKDQAESIIDKYNQN 740 Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789 LK Q + + ++ + ++ +++ + K+ L + Sbjct: 741 KDLLKNDQLENIYLQIKNTTINKDNLLVIKNLLDQSKEVNKDYDKKVNDLITANKLLKYK 800 Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++N + ++++ K+LK + D L+ K I++L+ + E +++ V+ Sbjct: 801 DLTPSLNKDNINEIRLETTDLNIKDLKQLADDLRNKYNDLIVILLSSTNEN-TFIVVAVS 859 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + L +++ A+D+ GGG ++AQ Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891 >gi|225620397|ref|YP_002721654.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1] gi|225215216|gb|ACN83950.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1] Length = 867 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 296/885 (33%), Positives = 477/885 (53%), Gaps = 49/885 (5%) Query: 20 HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79 H + SSSLIP +DP+L+FT +GM+ FK + G +K Y V T+QKC R DL+N Sbjct: 19 HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRLS----DLEN 74 Query: 80 VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138 +G+T RHHTFFEM GNF F G YFK+ AI+ AW+ T+ L R+Y+++Y++D++AFK Sbjct: 75 IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134 Query: 139 LWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195 +W + G+ +KI+R+ DNFW ++G CGPCSE++ D GE G P + E Sbjct: 135 IWNEHIGVPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 RY+E WNLVF +F Q + LP + IDTGMGLER+ + Q +NY D+ K ++ A Sbjct: 195 RYLEFWNLVFNEFFQDTEGNLSPLPNVGIDTGMGLERLCYITQGVESNYQTDVMKPIVDA 254 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 + +KY+ N +I DHLR+ F+I++G P+NEGRGYVLRR++RRA+ A L Sbjct: 255 IAKKLNVKYDDKNKTKINLIADHLRALVFVISEGCTPSNEGRGYVLRRLLRRALKTASDL 314 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G+ + + ++ Y L + + ++ L+ E+ +F T+ G+ L V+ Sbjct: 315 GHKGSFLNEITSSVVNVYKEIYDYLPKEEENVKRILKDEENKFINTISAGMNKLYAVMEE 374 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 ++++G AF L+DT+GLP+DI ++ G +D F +A+EEQ+ R+R Sbjct: 375 NKDSKVISGKDAFMLFDTYGLPIDITEEEASDHGFT-VDKAGFEEAMEEQKKRSRGAG-- 431 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 + ++F GY ++ + +L NGV++ + A+ Sbjct: 432 ---------------EDKRSKF-GY--------VENYETKYVGEETDNLINGVNAKIIAV 467 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555 + ++ S ++ D +PFY E GGQ+GD G + +K E + Sbjct: 468 YEDNAKKDKTSS-SNAVIITDVSPFYGEMGGQIGDNGYIENSKKEIIKIIDTQKKENTII 526 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H A L + L +++ R + NH+ATH+L L LG+HV+Q GS ++ + Sbjct: 527 HIADCSSHSLSVGEEIKLFVNFDRRSAIRKNHTATHILQKVLELTLGNHVNQAGSFVSDE 586 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675 LRFD TH I+ L SIE+ VN+++ +++P V + M +E+AIA GA AL G KY D Sbjct: 587 YLRFDFTHPDSISEDTLISIENQVNEVVFKSMPAVIKYMPKEEAIACGAKALFGEKYPDT 646 Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 VR++ + G S LCGG+H+++T E+ +IVSE S+ +G+RRIEAITG +A + Sbjct: 647 VRILDI----GNGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLKAANEA 702 Query: 736 MGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHKI 791 K+K+LA L S+ + R E + E +KLQ + K + + Sbjct: 703 SKLFSKVKNLAHILNASKTDELTVRAESLQNEVKKLQKEIKQLKTSGASAVSFMDNFEDL 762 Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DR 849 + F + ++ D KE++ D ++++++ I +++ + S+L+ +T + L + Sbjct: 763 KGIKFYNLEFND-DIKEVRLYADTIKERVKDSIAVMIS-KTDSSNSILVQITGNALKEKK 820 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +A ++ + GG G GG+ AQ N KA + I + S Sbjct: 821 LSANNIIKDIIAAAGGRG-GGKDTFAQGSIENIEKAKEEINKLKS 864 >gi|71655886|ref|XP_816499.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] gi|70881631|gb|EAN94648.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 959 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 290/982 (29%), Positives = 456/982 (46%), Gaps = 122/982 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 V+ +R FL+FF++ GH+ +PSS ++P NDPTL+F N+GM FKN+F G P Sbjct: 6 VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI+ AW+LLT+ + Sbjct: 66 TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T ++ DEEA +LW ++ + + +I DNFW M + GPCG Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ ++E IEIWNLVFMQFE+ LPKM +DTGMGL Sbjct: 184 PCSEVHFDRL-GGRNAAELVNKEDPMVIEIWNLVFMQFERHEDGVLVPLPKMHVDTGMGL 242 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------NHRVIVDHLRS 281 ER+ +++Q+ +NYD D + L +A + VTG + I +RVI DH+R Sbjct: 243 ERLTSIMQDVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 S +ADG +P + GRG+VLRRI+RRA+ Y LG L+ A+ +G + + Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362 Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 + I+ L E+ F KT D GL L+ ++ D ++GD AF L+D +G P+ Sbjct: 363 QDPRTVQRIKTVLADEEASFAKTWDVGLKHLNKAVADAV-DNTISGDNAFILHDRYGFPV 421 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + GL + + +A+ L G K + + + Sbjct: 422 DLTCLLAEKAGLRVD--------MNGFHAAMKANQLSAGRVAAAKTFLDVHQL------- 466 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512 + +K+ + + ++ VKAI + G V+ + G++ E Sbjct: 467 --------EELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRT 567 ++ D T FYAE+GGQ+ DTG + + G VH + + Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVKKVYNLGGYVVHLGRMMTTNSTAVPIPV 578 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRFD 620 S+ L +DY+ R ++ NHS TH+L+ L + V Q GS +T + LRFD Sbjct: 579 TSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEEMLRFD 638 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679 +++ ++ +L IE +N+ I Q L V + + E A G + G KY D V V+ Sbjct: 639 FSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSVI 698 Query: 680 SVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE---- 724 SV + ++ CGGTH+S+ E + I+SE ++ G+RRI Sbjct: 699 SVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRIVVATR 758 Query: 725 -------------------AITGQRARSHLMGQDEKLKSLASFL------KVSQGNVVGR 759 + G S K + L + + G Sbjct: 759 DAAREARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDGS 818 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817 V + + ++ + + + F +S+ + + L++ D Sbjct: 819 VRAAIANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGFT 878 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +Q + + + + KA L+ + + + +AVD A+ + G GGG+PH AQ Sbjct: 879 NAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAAQ 933 Query: 877 SGGPNGN---KADQAIAGVASF 895 SG + ++A+A A Sbjct: 934 SGLTAADVDVAMEKALAEAAKM 955 >gi|313665096|ref|YP_004046967.1| alanine--tRNA ligase [Mycoplasma leachii PG50] gi|312949489|gb|ADR24085.1| alanine--tRNA ligase [Mycoplasma leachii PG50] Length = 896 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 290/934 (31%), Positives = 470/934 (50%), Gaps = 100/934 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF H L SLIP +DP+L++ NSG+ K F G++ P Sbjct: 1 MKKLSTNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AIQLAW+LLT + Sbjct: 61 PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIQLAWELLTDKN 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF Sbjct: 117 YFDIDKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175 Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE I L + E +RYIE+WN+VF QF LP+ +IDTG GLE Sbjct: 176 YDRGEVWDPNKIGSRLISDNIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDH 278 R A++ Q N++ D+F I+ EQ+ KY +N N +VI DH Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADH 295 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R++ F I+DG+ P N+ RGY++RR++RR+ + + LG + + L+ ++ M YP Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYP 355 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 LI K L+E+T++ E+E+F KTL +G LL+ ++ I++G A L++++G P+ Sbjct: 356 YLIDRKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNIVSGKDALLLFESYGFPI 412 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + +I +D+ FN LE+ + R L + + F+ + ++F Sbjct: 413 EQTIEIS-ELSNVQVDVEGFNNLLEQAKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G+ L V + + VE Q+ V+ D+T Sbjct: 470 GWSELSRDNV----------------------KVIYMFTDQKQVESITD-QEAFVILDKT 506 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G D ++ + DVQ+ + H I +G L+ + ++ + Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNI-HRIKVQGTLKVNDLINCRVEEE 565 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHS TH++H+AL +LG++V Q+GS +GLR D T+ + TS EL ++ Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTNVMQSGSYNDENGLRMDFTYHRLPTSEELLKAQNL 625 Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V + I + T + E+++ A A KY+ VRV+ G SS LCGGT Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGT 680 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS--------- 747 HV++T EI I S +G+ RI+ +T RA +L Q + K A Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKAYKDQAESIIDKYNQN 740 Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789 LK Q + + ++++ ++ +++ + K+ L + Sbjct: 741 KDLLKNDQLENIYLQIKNITINKDNLLVIKDLLDQLKEVNKDYDKKVNDLITANKLLKYK 800 Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++N + +++ K+LK + D L+ K I++L+ +KE +++ V Sbjct: 801 DLTPSLNKDNINEIRLETTDLTIKDLKQLADDLRNKYNDLIVILLSSTKENN-FIVVAVG 859 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + L +++ A+D+ GGG ++AQ Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891 >gi|321260042|ref|XP_003194741.1| alanine-tRNA ligase [Cryptococcus gattii WM276] gi|317461213|gb|ADV22954.1| Alanine-tRNA ligase, putative [Cryptococcus gattii WM276] Length = 1012 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 297/969 (30%), Positives = 441/969 (45%), Gaps = 97/969 (10%) Query: 4 VSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 + +R TF+++F H PSS +IP +D TL+F N+GM +K +F G P Sbjct: 62 AAKVRQTFIDYFVNQPGFEHTFWPSSGVIPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK A+ +AWDLLT Sbjct: 122 SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKLGALTMAWDLLT 181 Query: 116 KEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + L + RLY+T ++ D EA ++W+ + G+ I+ DNFW M TG Sbjct: 182 RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSEI FD+ + + +EIWN VF+Q+ ++ E LP +DTG Sbjct: 241 PCGPCSEIHFDRI-GGREAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHVDTG 299 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278 MG ER+ +VL ++NYD D+F + +++TG + +RVI DH Sbjct: 300 MGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVIADH 359 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSA 336 +R+ + I+DG +P +GRGYVLRR++RR + YA L+P + +G Sbjct: 360 IRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESLGPI 419 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTH 394 +PE+ + + E L E+ F +TL RG L + + K +L+G ++LYDT+ Sbjct: 420 FPEVTKKIPELIEILNEEEASFARTLTRGEALFNKYATTAIAEKRTVLSGKDIWRLYDTY 479 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ Q + RGL ID +F +A E ++A + L Sbjct: 480 GFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGGKEKAGAQVKLDVHDLA----- 533 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKV 511 D + + + VK+I + + Sbjct: 534 ------------ALEANDAVPKTDDSFKYNLDDIKASVKSIYHNSKFLNSTSELPPNTTF 581 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+T FYAE+GGQ DTG D + + G +H +E G + + Sbjct: 582 GILLDRTNFYAESGGQEYDTGVIAIDDKAEFKVEDVQVYNGYVLHIGRMEEGEIEVGDEV 641 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + T D R + NH+ TH+L+ AL +LG H+ Q GS + P LRFD +H K I E Sbjct: 642 ICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSIAVPE 701 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV----------- 679 L IE ND I + +PV + M +A G A+ G Y D VRVV Sbjct: 702 LIKIEAICNDWIKKGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVCLGYPLEEISK 761 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-------- 731 +VE S CGGTHV+ T +I I+ ESSI GIRRI A+TG A Sbjct: 762 NVEDARWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDAHDVSRKGA 821 Query: 732 -----RSHLMGQDEKLKSLA-----SFLKVSQGNVVGRVEEIWEEYRKLQLIHAK----- 776 + K K LA + L S +++ + + E++ K+Q Sbjct: 822 EFERKLQRIRELQGKEKELAMKPFLTELGQSGISLIKK-NSLKEQFEKVQGELVAAAKAK 880 Query: 777 ----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K+ + + + N + +SK L + A K + Sbjct: 881 VAADSKIISEAIKIYFQENPNENVFAGSFDVGGNSKTL-TAAVAAGKAASKAVYAFSADP 939 Query: 832 KEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + + + + +A AKV+ GG GGGR A G NK D+AI Sbjct: 940 ETGKVAHVNYLPKPILESKALDAKIWLNEVAKVI-GGKGGGRDDSAAGVGSEINKIDEAI 998 Query: 890 AGVASFLKK 898 S KK Sbjct: 999 VVAKSVYKK 1007 >gi|229820505|ref|YP_002882031.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333] gi|229566418|gb|ACQ80269.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333] Length = 896 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 313/922 (33%), Positives = 489/922 (53%), Gaps = 61/922 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR +L++F + H ++PS+SLI DP+++FT +GMVPF G E+ Y Sbjct: 1 MRTAEIRRRYLDYFAERDHTVVPSASLISA-DPSILFTIAGMVPFIPYIVGTEQAPYSRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND++ VGRT RH TFF+M GNFSFG YFKE A++ AW+L+T Sbjct: 60 VSVQKCIRT----NDIEEVGRTTRHGTFFQMNGNFSFGDYFKEGAVEFAWELMTSSQDDG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F LD L++TV++ED E ++ +++ A++++ ++ D+FW + GP GP +E Sbjct: 116 GFGLDPDLLWVTVWEEDAETARVLREVIDFPAERVVPLSRADSFWDTGQPGPAGPTAEWH 175 Query: 177 FDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230 D+G + P G P G+RY+E WNLVF +F + + LP SIDTGMGL Sbjct: 176 LDRGADRGPDGGPAVDTAGDRYVEFWNLVFDEFLRGPGPGKDYPLLGELPMKSIDTGMGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ID +I +E+++G +Y + V RV+ DH+RS+ L++D Sbjct: 236 ERVAAILQGKDNIYEIDEVFGVIARAEELSGRRYGASREDDVRMRVVADHVRSAMMLVSD 295 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRR++RR++ RLLG T+P + LLP M ++YPEL I Sbjct: 296 GVKPSNEGRGYVLRRLLRRSVRAMRLLGVTDPALPELLPVSKDVMKASYPELEADFGRIS 355 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + E++ F +TL G +LD + L + L G+ AF L+DT+G P+D+ ++ Sbjct: 356 TIVYDEEDAFRRTLTSGTTILDTAVRRLKESGGSQLGGEQAFALHDTYGFPIDLTLEMAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG-ATQFIGYDLLR 464 +G +D +F + + EQR+RARA +L SG + ++ + F+GY Sbjct: 416 EQG-VSVDEEAFRRLMGEQRARARADALAKRSGHADTSVYRDIAGSLPAPVSFLGYTDAE 474 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 V ++ G A + +VEVV D+TPFYAEA Sbjct: 475 ARVA-----------------------VVGLLVDGVPAPAAQAPAEVEVVLDRTPFYAEA 511 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + DG +++ DVQ +G+ VH + G+L S V +ID RR + Sbjct: 512 GGQLADQGQIVLDDGAVVEVDDVQAPIKGLSVHRGRLVEGVLGLGSSGVASIDTARRRAI 571 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H+ATH++H A+ +G +Q GS P RFD + SA L I VN ++ Sbjct: 572 ARAHTATHMVHKAIREHVGESATQAGSENAPSRFRFDFRSGSALPSAALAEINARVNTLL 631 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 A +L V +M +DA A+GA AL G KY DRVRVVS+ GG S LC GTHV+STG Sbjct: 632 ADDLDVTDEVMALDDARAAGAMALFGEKYGDRVRVVSI----GGDWSKELCAGTHVASTG 687 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 + L+ ++ ESSI +G+RR++A+ G A + + + L + + RV + Sbjct: 688 HLGLVTLLGESSIGSGVRRVDALVGDGAFGYQAKEHALVGQLTQLVGARGEELPERVSSL 747 Query: 764 WEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQ 817 ++ + + S ++ ++H EV ++++++ L+ Sbjct: 748 MTRLKEAEREIQSLRQGRLLAAAASLAASAALVSGARVVTHDAGEVASVDDVRALVVDLR 807 Query: 818 KKI--QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM 874 ++ +++VG + +A V+ + A +L R A GGGGGGR + Sbjct: 808 DRLGEAQAAVVVVGGVAKGRAVVVAATNPAARESGVRAGELVR-VAAGALGGGGGGRDDL 866 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ GG + ++ A+ V + + Sbjct: 867 AQGGGSDPDQIPAALEQVVAAV 888 >gi|323173022|gb|EFZ58653.1| alanyl-tRNA synthetase [Escherichia coli LT-68] Length = 714 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 313/741 (42%), Positives = 444/741 (59%), Gaps = 54/741 (7%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT K F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L + Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + ++ A++F GYD L ++ V A+ G+ Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796 L +A LK N+ +V + E R+L+ + K Q ++ + V Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 797 MSHIISEVDSKELKSVMDALQ 817 + +S V+ K L++++D L+ Sbjct: 682 LVSELSGVEPKMLRTMVDDLK 702 >gi|322504973|emb|CAM45216.2| putative alanyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 962 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 268/962 (27%), Positives = 447/962 (46%), Gaps = 118/962 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 VS +R F+++F+K GH +P S + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ D EA +LW + L +II DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ +++ +EIWNLVFMQFE++ LP+ +DTGMGL Sbjct: 186 PCSEVHFDRI-GGRNAAGLVNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281 ER+ ++LQ +NYD D++ + +A + TG + I + +RV+ DH+R Sbjct: 245 ERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIRC 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 + + DG++P + GRG+VLRRI+RRA+ Y LG L+ ++C +G +P L Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPHL 364 Query: 341 I--QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396 + I+ L E++ F KT + GL + +++G AF L+D +G Sbjct: 365 KDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYGF 424 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + G+ +D+ FN + +A S G + I E Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM-----KANQVSAGRVAAAKTFIDAYQLEDL---- 474 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509 K+ + V AI + + G + Sbjct: 475 -------------KKRAIPQTDDGAKYAWEDSTGEVLAIFDKKNSRFISLLEPGNDLGAE 521 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566 +V ++ + T FYAE+GGQ+ DTG + + G VH + + + Sbjct: 522 EVGIILNATNFYAESGGQVYDTGRLVAARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIP 581 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620 + + +DY+ R ++ NH+ TH L+ L + + V Q GS +T + LRFD Sbjct: 582 LSALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVTDEMLRFD 641 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 +H +++ +L +E +N+ I LP + + +G + G KY D V V+ Sbjct: 642 FSHHTKLSNEDLVRVEKLLNEKIQAGLPVYREEVPLAAASKINGLRQMFGEKYPDPVSVI 701 Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ + ++ CGGTH+S+ E I+SE ++ G+RR+ T Sbjct: 702 SIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVVATK 761 Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759 A L+ ++ + ++ + LK + + N+ Sbjct: 762 AEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNKKVGDSCVPLVLKNAMRDNIDAA 821 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817 ++++ + ++ + + + A F H ++ + + L++ D Sbjct: 822 IKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAFSDGFS 881 Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + L+G EK +++ + T + + +AV A+ S G GGG+P+ AQ Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGKPNAAQ 936 Query: 877 SG 878 SG Sbjct: 937 SG 938 >gi|154337657|ref|XP_001565061.1| alanyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 962 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 267/962 (27%), Positives = 446/962 (46%), Gaps = 118/962 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 VS +R F+++F+K GH +P S + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ D EA +LW + L +II DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSE+ FD+ +++ +EIWNLVFMQFE++ LP+ +DTGMGL Sbjct: 186 PCSEVHFDRI-GGRNAAGLVNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281 ER+ ++LQ +NYD D++ + +A + TG + I + +RV+ DH+R Sbjct: 245 ERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIRC 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340 + + DG++P + GRG+VLRRI+RRA+ Y LG L+ ++C +G +P L Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPHL 364 Query: 341 I--QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396 + I+ L E++ F KT + GL + +++G AF L+D +G Sbjct: 365 KDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYGF 424 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + G+ +D+ FN + +A S G + I E Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM-----KANQVSAGRVAAAKTFIDAYQLEDL---- 474 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509 K+ + V AI + + G + Sbjct: 475 -------------KKRAIPQTDDGAKYAWEDSTGEVLAIFDKKNSRFISLLEPGNDLGAE 521 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566 +V ++ + T FYAE+GGQ+ DTG + + G VH + + + Sbjct: 522 EVGIILNATNFYAESGGQVYDTGRLVAARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIP 581 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620 + + +DY+ R ++ NH+ TH L+ L + + V Q GS + + LRFD Sbjct: 582 LSALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVMDEMLRFD 641 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 +H +++ +L +E +N+ I LP + + +G + G KY D V V+ Sbjct: 642 FSHHTKLSNEDLVRVEKLLNEKIQAGLPVYREEVPLAAASKINGLRQMFGEKYPDPVSVI 701 Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ + ++ CGGTH+S+ E I+SE ++ G+RR+ T Sbjct: 702 SIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVVATK 761 Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759 A L+ ++ + ++ + LK + + N+ Sbjct: 762 AEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNKKVGDSCVPLVLKNAMRDNIDAA 821 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817 ++++ + ++ + + + A F H ++ + + L++ D Sbjct: 822 IKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAFSDGFS 881 Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + + L+G EK +++ + T + + +AV A+ S G GGG+P+ AQ Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGKPNAAQ 936 Query: 877 SG 878 SG Sbjct: 937 SG 938 >gi|256383814|gb|ACU78384.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384644|gb|ACU79213.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455443|gb|ADH21678.1| alanine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 896 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 285/934 (30%), Positives = 470/934 (50%), Gaps = 100/934 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF H L + SLIP +DP+L++ NSG+ K F G++ P Sbjct: 1 MKKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT + Sbjct: 61 PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKN 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF Sbjct: 117 YFDIDKDKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175 Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE I L E +RYIE+WN+VF QF LP+ +IDTG GLE Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVN-----------HRVIVDH 278 R A++ Q N++ D+F I+ EQ+T KY +N N +VI DH Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNDQFKYSIDNYFNPNKKQTRINTAFKVIADH 295 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R++ F I+DG+ P N+ RGY++RR++RR+ + + LG + + L+ ++ M YP Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYP 355 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 LI K L+E+T++ E+E+F KTL +G LL+ ++ ++ A L++++G P+ Sbjct: 356 YLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + +I +DI F + LE+ + R L + + F+ + ++F Sbjct: 413 EQTIEIS-ELSNVTVDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G+ ++ V + + VE Q+ V+ D+T Sbjct: 470 GWSETSRD----------------------NAKVIYMFTDQKQVESITD-QEAFVILDKT 506 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G D ++ + DVQ+ + H I +G L+ + +D + Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNI-HRIKVQGTLKVNDLVNCRVDEE 565 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHS TH++H+AL +LG+ V Q+GS +GLR D T+ + T+ EL ++ Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625 Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V + I + T + E+++ A A KY++ VRV+ G SS LCGGT Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGT 680 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLAS--------- 747 HV++T EI I S +G+ RI+ +T + +L Q + K A Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQN 740 Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789 LK Q + + ++++ ++ +++ + K+ L + Sbjct: 741 KDLLKNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYK 800 Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++N + ++++ K+LK + D L+ K I++L+ + E V++ V+ Sbjct: 801 DLTPSLNKDNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENN-FVVVAVS 859 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + L +++ A+D+ GGG ++AQ Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891 >gi|66819737|ref|XP_643527.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] gi|74860734|sp|Q86H43|SYAM_DICDI RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|60471622|gb|EAL69578.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] Length = 932 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 340/928 (36%), Positives = 474/928 (51%), Gaps = 101/928 (10%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R TFL +F+KNGH+ LPS SL+P ND +L+FTN+GMV FKN FTG E+ Y+ V Sbjct: 28 TSTKEVRETFLNYFEKNGHKRLPSGSLLPYNDNSLLFTNAGMVQFKNQFTGNEESKYKKV 87 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY FK +IQ AWDLLTKE+ Sbjct: 88 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWDLLTKEYG 147 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFD 178 L + RL I+V + DEE+ ++W+ GL DKI+ DNFWSM + GPCGPCSEIF+D Sbjct: 148 LPKERLAISVLEGDEESAEIWRNQIGLPNDKIMYKGREDNFWSMGDGPGPCGPCSEIFWD 207 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMSIDTGMGLERMA 234 G+ + G Y+EIWNLVFMQ+ + K+ + LP +DTGMGLERMA Sbjct: 208 HGKEVDGER---------YLEIWNLVFMQYNKSGKEGDEMPVDKLPIPCVDTGMGLERMA 258 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK----------YEGNNIVNHRVIVDHLRSSSF 284 +VLQ K NYDIDLF++LI + +++ M +RVI DHLRS SF Sbjct: 259 SVLQGKFTNYDIDLFQNLINSFKEIVTMDVGRAQFQLQQDPQRVETAYRVIADHLRSISF 318 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI+DG++P N GRGYVLR+I+RRA+ Y ++LG+ P + L P L EMG YP+LI+ Sbjct: 319 LISDGVIPFNIGRGYVLRKIIRRALSYGKILGFNGPFLSTLFPLLEREMGDIYPQLIERS 378 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I + +E+ F + RG+ L+ + LN + F LY+T+GLPL+ M + Sbjct: 379 NEIRNVILNEEGTFYNAIQRGIPYLEEFVQQ----NKLNEESLFLLYNTYGLPLE-MSQV 433 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT----------EKIWFSLKEKYGA 454 + ID+ N+ ++E R ++R S + EK + S K Sbjct: 434 KAKQNNIEIDMDKVNKLIDETREQSRLTWNTSSSSSDQTTQQTTQLPEKTFLSWKSDNIK 493 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 +FIGY+ + N S ++++ + V + Sbjct: 494 PKFIGYN--------------------GCVENDNSKVLRSHFDNDSHL--------VYLS 525 Query: 515 FDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 D+TPFY +GGQ+GD G I + + + V ++ + Sbjct: 526 LDETPFYGTSGGQVGDVGELINVSSGKNVYRVINTIKPYEGGLVLVVEWDPSQQLASQVY 585 Query: 569 MSLVLTIDYQNRRQLSI------NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 L R SI +HSATHLLH AL ++G V Q GS + + LRFD T Sbjct: 586 QDLKQDSLLNCRVDRSIRNQVAVHHSATHLLHAALRNVIGKSVVQAGSLVGSESLRFDFT 645 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSV 681 H + +T +++ IE VND IA+++ + T + E + S L KY++ VRVVS+ Sbjct: 646 HGQKLTPNQIEQIEQWVNDAIAKDIALNTDEIPYEQASKNSDTLQLFSEKYSELVRVVSI 705 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 S LCGGTHV + I I+SESS+ AG RRIEA+ G A + + Sbjct: 706 PG-----FSKELCGGTHVERSSSIHQFKIISESSVAAGTRRIEAVAGLAATNFFKNHYQL 760 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------- 793 + L++ + N E + K + KL++ LS Sbjct: 761 VHQLSNSINSPIVNFQQSFERLVNTNSKQEKEIFDLKLKIA--QLSSVNYNGQYKSDNGG 818 Query: 794 --VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV-LIVVTEDLLDRF 850 + HII D K V + K+ S I L ISK K L+ + Sbjct: 819 EMIPLSLHIIDCEDKKAFTKVTENFAKEFSSSPIQL-TISKGGKVLCQLLSSSSSSSSSL 877 Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +A + + K +G G GGG MA + Sbjct: 878 SADTVLKQLFKSIGMGKGGGNKLMANAS 905 >gi|331703175|ref|YP_004399862.1| alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801730|emb|CBW53883.1| Alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 896 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 285/934 (30%), Positives = 470/934 (50%), Gaps = 100/934 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF H L + SLIP +DP+L++ NSG+ K F G++ P Sbjct: 1 MKKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT K Sbjct: 61 PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF Sbjct: 117 YFDIDKNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175 Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE I L E +RYIE+WN+VF QF LP+ +IDTG GLE Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVN-----------HRVIVDH 278 R A++ Q N++ D+F I+ E++T KY +N N +VI DH Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEELTNDQFKYSIDNYFNPNKKQTRINTAFKVIADH 295 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R++ F I+DG+ P N+ RGY++RR++RR+ + LG + + L+ ++ M YP Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYP 355 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 LI K L+E+T++ E+E+F KTL +G LL+ ++ ++ A L++++G P+ Sbjct: 356 YLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + +I +D+ F + LE+ + R L + + F+ + ++F Sbjct: 413 EQTIEIS-ELSNVTVDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G+ ++ V + + VE Q+V V+ D+T Sbjct: 470 GWSETSRD----------------------NAKVIYMFTDQKQVESITD-QEVFVILDKT 506 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G D ++ + DVQ+ + H I +G L+ + +D + Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNI-HRIKVQGTLKVNDLINCRVDEE 565 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHS TH++H+AL +LG+ V Q+GS +GLR D T+ + T+ EL ++ Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625 Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V + I + T + E+++ A A KY++ VRV+ G SS LCGGT Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVNKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGT 680 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLAS--------- 747 HV++T EI I S +G+ RI+ +T + +L Q + K A Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQN 740 Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789 LK Q + + ++++ ++ +++ + K+ L + Sbjct: 741 KDLLKNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYK 800 Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++N + ++++ K+LK + D L+ K I++L+ + E V++ V+ Sbjct: 801 DLTPSLNKDNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENN-FVVVAVS 859 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + L +++ A+D+ GGG ++AQ Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891 >gi|224001280|ref|XP_002290312.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] gi|220973734|gb|EED92064.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] Length = 966 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 282/969 (29%), Positives = 433/969 (44%), Gaps = 97/969 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59 +R+TF+ +F++NGH SS +P +DPTL+FTN+GM +K +F G P + Sbjct: 17 DKVRSTFISYFERNGHTFWRSSPCVPHDDPTLLFTNAGMNQYKPLFLGTCDPALKMASLK 76 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI++AW LT+EF Sbjct: 77 RATNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEAIEMAWKCLTEEFK 136 Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LD RLY T + D+EA ++W + L A++++ DNFW M TGPCGPC+ Sbjct: 137 LDPNRLYATYFGGDESTPCDDEAREIWLQY--LPAERVLPFDAKDNFWEMGATGPCGPCT 194 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + IEIWN VF+QF ++ LP +DTGMG ER+ Sbjct: 195 EIHYDRIGNRD-ASKLVNADLPDVIEIWNNVFIQFNREADGSLRPLPAQHVDTGMGFERL 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSF 284 ++LQ +NYD D+F L A +++T + + +RV+ DH+R+ SF Sbjct: 254 TSILQGVDSNYDTDIFIPLFDAIQKITGARPYAGKIEKEDPEFIDMAYRVVADHVRTLSF 313 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG +P+N+GRGYVLRR++RRA+ Y R L L+ L MG +PEL + Sbjct: 314 AIADGAVPSNDGRGYVLRRVLRRAVRYGRQNLNAELGFFAQLVRTLVELMGDTFPELREK 373 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + + +R E+E F KT+D+G+V + LG ++ G+ A LY + G P+D+ + Sbjct: 374 EEYVTAIIREEEESFSKTVDKGIVEFNKRCDALGDVKVFPGEDAHFLYTSMGFPVDLTEL 433 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + RGL +D+ ++ ++E++ + A L S + K + E+ G D Sbjct: 434 MCEERGLT-LDMEGYDAKMKEEQELSNAAHLAKMSAGSGKDMRLVAEQTSHLVNKGVDAT 492 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQKVEVVFDQTPFYA 522 + + + V+ V +V D+T FY Sbjct: 493 NDDAKYVWNEDLEGSIIKALFIGRNETE-----DGIGFVDSISKENGAVGIVLDKTNFYG 547 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ DTG + +H V G + + +DY R Sbjct: 548 ESGGQTFDTGSIKTSSGATIEITNVQIYGSFVLHIGDVTEGTVTVNDAATCCVDYVRRAP 607 Query: 583 LSINHSATHLLHHALSTI---------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ++ NH+ TH+L+ AL + G+ V Q GS + + LRFD + S P+T +L Sbjct: 608 IAANHTMTHILNFALRDVLVTRGDADQHGASVDQKGSLVDENKLRFDFSWSGPLTPEQLV 667 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV------------S 680 ++E D I +PV + E A S A+ G Y D VRVV + Sbjct: 668 AVEKICVDQINSAVPVDNYVAPLEGAQQISSLRAVFGEVYPDPVRVVAVSPSPITSMLEN 727 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + +S CGGTH+ +T E ++SE I G+RRI +T + A E Sbjct: 728 PQDAQWNKYSVEFCGGTHLKNTSEAQGFVLLSEEGIAKGVRRITGVTMKDAAIATAAASE 787 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEY--------RKLQ---------LIHAKRKLQLNV 783 L + + ++ V+ + E +K+Q A K Sbjct: 788 FEAKLTAAGSLEGLDLEAHVKVLTVEMEGLSISAAKKIQFRDVMGTYGKKVAAWKKANAA 847 Query: 784 ED---------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 E + + + VD K K+V A KKI+ ++ V + Sbjct: 848 EQTATVVEQVIEAANSTEGNKVVVRCDFGVDGKVAKAVSTAYGKKIKDKALLFVTADVDA 907 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-------HMAQSGGPNGNKAD 886 + V+ + + + G AQS P D Sbjct: 908 DRFMVVAFAPKG--SDVDCKAWVAAAVA--------GTDGKGGGKKDSAQSTVPGVGNID 957 Query: 887 QAIAGVASF 895 + F Sbjct: 958 GVLEKARGF 966 >gi|328872010|gb|EGG20380.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum] Length = 1018 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 325/908 (35%), Positives = 461/908 (50%), Gaps = 91/908 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+TFL +F +NGH+ + SSLIP ND TL+FTN+GMV FK F E P VTT QK Sbjct: 36 IRSTFLNYFNENGHKKVDGSSLIPHNDSTLLFTNAGMVQFKQCFAALETPPAPMVTTAQK 95 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRR 124 CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY K AI+ AW LLT L R Sbjct: 96 CVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYKHAKRDAIRHAWQLLTGPMGLPANR 155 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFDQGECI 183 + +V + DEEA +W+ GL+ D+I+R DNFWSM + GPCGPCSE+F+D+GE Sbjct: 156 IVASVLEGDEEAADIWRTEIGLTDDRILRCGPKDNFWSMGDGAGPCGPCSELFWDRGE-- 213 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G+ +GERY+EIWNLVFMQ+ + + LP +DTGMGLERMA VLQ+K +N Sbjct: 214 -----GNEMDGERYLEIWNLVFMQYWRDDAGNLTPLPTPCVDTGMGLERMAAVLQDKQSN 268 Query: 244 YDIDLFKHLIQASEQVTGMKYE--------GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Y+IDLF +LI + V + RVI DHLRS SFLIADG++P+ Sbjct: 269 YEIDLFANLIDGIKSVAEKNDSVFVGKVHADKFETSMRVIADHLRSVSFLIADGVVPSAT 328 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLR+I+RRA+ Y +++G+ +P + L P L + MG Y +L Q I+ + +E+ Sbjct: 329 GRGYVLRKIIRRALSYGQMIGFQQPFLHLLQPLLTSLMGDFYTQLSQRAPQIQNVIYNEE 388 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F + + RG+ LD ++ DE F +Y T+GLPL+I + + Sbjct: 389 ILFYQAIQRGVTYLDDLIDSNKLDEW----NVFNIYSTYGLPLEISEVKARQSNINIDMD 444 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 E + + + T +I K + + F+GY+ L + +K Sbjct: 445 KVQQFIDETKEKSKSSWKKDQSNNNTNQILQKWKNENIKSNFVGYEKLHCTTRIKAQHFS 504 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + VV + PFYA +GGQ+GD G + Sbjct: 505 ------------------------------EEDNLLYVVLEDCPFYAVSGGQIGDKGIIV 534 Query: 536 GDGI------RLQITDVQKKAEGIFV-------HHAIVERGILRTEMSLVLTIDYQNRRQ 582 + T + V L+ + + +D Q R+Q Sbjct: 535 TSVGNGENIYNVIDTLKPYDGVQVVVIEFDSTKQRLNQVMDDLKVDNKVDCRVDKQTRQQ 594 Query: 583 LSINHSATHLLHHALST-ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 +I+H+ATHLLH AL + + V Q GS + P+ LRFD T +++ ++ +IE VN Sbjct: 595 TAIHHTATHLLHSALRKELGENSVVQAGSYVGPESLRFDFTAVGKLSNKQITNIEQTVNQ 654 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I Q++P+ + M++ DA+ + A L KY D VRVVSV S CGGTHV Sbjct: 655 AIQQDIPLDVQEMSQGDAVKTDAIQLFSEKYGDSVRVVSVPG-----VSKEFCGGTHVGK 709 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I L IVSE+SI AG RRIEA GQ A + L + LA+ L V V VE Sbjct: 710 TGDIQLFRIVSETSIAAGTRRIEARAGQAAATWLDSFKSTVDGLATKLGVPTNIVGKHVE 769 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------------IADVNFMSHIISEVDSKE 808 + + ++L+ ++ + Q+ + H ++ +S + +D Sbjct: 770 SLIDNKKQLEKQVSELQQQILFNSIKTHNGKIQLDGNNNNSIACSLHLLSGQSTTIDKNT 829 Query: 809 LKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAK-VL 863 L+ + L K + I I+L + + K ++ V L + NA L + + Sbjct: 830 LQEISKKLAKTQPNHIHILLTTEATDNK--LICTVGSQLEKQEVSANADKLLKQLLTNTI 887 Query: 864 GGGGGGGR 871 G GGG+ Sbjct: 888 KFGKGGGK 895 >gi|298708166|emb|CBJ30506.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus] Length = 992 Score = 625 bits (1612), Expect = e-176, Method: Composition-based stats. Identities = 272/938 (28%), Positives = 430/938 (45%), Gaps = 102/938 (10%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 S +R +F+ FF +K+ H SS ++P +DPTL+F N+GM FK +F G P Sbjct: 33 ASRVRDSFISFFTEKHDHTFWKSSPVVPHDDPTLLFANAGMNQFKPLFLGTADPALPLSK 92 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+ LT Sbjct: 93 LTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGSYFKEEAIGYAWECLTTV 152 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY T + DE+A K+W K L +++ + DNFW M + GPC Sbjct: 153 YKLDPSRLYATYFGGDEKLRVGADEDAKKIWLKY--LPESRVLPFSLADNFWEMGDVGPC 210 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC EI +D+ + + IEIWN+VF+Q+ ++N LP IDTG+G Sbjct: 211 GPCVEIHYDRIGGRDAAKD-VNMDKPEVIEIWNVVFIQYNRENDGSLKELPNKHIDTGLG 269 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280 ER+A++LQ K +NYD D+F + +A TG + N + +RV+ DH+R Sbjct: 270 FERLASILQGKMSNYDTDVFVPIFEAIRSATGARPYTGKVGEEDSDNMDMAYRVVADHIR 329 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + + I DG P+N+GRGYVLRR++RRA+ Y + LG L+P + M +PE Sbjct: 330 TLTIAITDGCTPSNDGRGYVLRRVLRRAIRYGQQVLGGKPGFFHTLVPVVVGLMKGIFPE 389 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L+ A+ + ++ E+ F KTLD+GL + V + LG ++ G AF+LY + G PLD Sbjct: 390 LVDAEARVTAVIKDEEMSFNKTLDKGLKEFNKVAAALGDSKVFPGTAAFQLYSSMGFPLD 449 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 ++ + +GL+ +D+ F+Q + ++++++ + + + Sbjct: 450 LLTLMAEEKGLS-VDVEGFDQKMSDEKTKSNQARSNQKAAGGKPMIL------------- 495 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-------------EIVEEAV 506 + + K D + ++ V A+ V + Sbjct: 496 -EAEQMDWLSKRDTEATEASGRYTWHQQPAAKVLALFVGKGEGEDGVGFVPSASAVADEA 554 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF-VHHAIVERGIL 565 Q V VV D T FYAE GGQ+ D G Q + G + +H V+ G L Sbjct: 555 DQQTVGVVLDCTSFYAEGGGQIYDIGELSLSDGSGSFAVRQVSSFGAYTLHIGQVKAGTL 614 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH---VSQNGSCITPDGLRFDVT 622 +V +DY+ R ++ NH+ TH+L+ AL +L Q GS + + LRFD + Sbjct: 615 SVGSDVVCKVDYERRANVAPNHTMTHVLNFALRKVLDPSDGMCDQKGSFLDDEKLRFDFS 674 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681 S +T+ ++ +ED VND I +NLPV + E A + G +Y D VRV+S+ Sbjct: 675 WSGSLTAEQVADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSI 734 Query: 682 E-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 S CGGTH+S+T E I+ E+ I G+RRI A+T Sbjct: 735 GQDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVTRGL 794 Query: 731 ARSHLMGQDEKLKSL-------------------ASFLKV-----SQGNVVGRVEEIWEE 766 A + + + L A ++ + R+ + ++ Sbjct: 795 ALAAVERAKAFEQQLDVADGIEDISLDTTVRRLGAELDGAVISVKTKNKLRARLATLVQK 854 Query: 767 YRKLQLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + L+ + ++ E + + D+K ++ + K Sbjct: 855 AKALKKKVMEERVGQAVTVGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACP 914 Query: 822 S-GIIMLVGISKEKKASVLIV-VTEDLLDRFNAVDLAR 857 +ML +E + + + + + Sbjct: 915 ELTSMMLFTADEEADRYLCCGLIPNSKAAKKDTNKWVQ 952 >gi|224436671|ref|ZP_03657675.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] gi|313143169|ref|ZP_07805362.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] gi|313128200|gb|EFR45817.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] Length = 992 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 274/1022 (26%), Positives = 443/1022 (43%), Gaps = 158/1022 (15%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQ 59 M IR +LEFF+ NGH++ S L+P +D +L+FTN+GMV FK+IFTG+ P Sbjct: 1 MK---DIRALYLEFFKSNGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPN 56 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 57 IATSSQLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILG 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D+ LY+T+++ D+EA++LW + + + +I R+ DNFW M +TGPCGPCSEI+ DQ Sbjct: 117 FDKSLLYVTIHESDDEAYELWHE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQ 174 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G E G EG+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + Sbjct: 175 GAEFFNGEEDYFGGEGDRFLEIWNLVFMQYERSADGSLTPLPKPSIDTGMGLERVIALKE 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--------------------EGNNIVNHRVIVDH 278 + NN+D LF ++Q +++T Y +I + RVI DH Sbjct: 235 GEINNFDSSLFAPIMQCIKELTSKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADH 294 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ +FL+A G+ EGRGYVLRRI+RRA+ + LLG + + ++ +C MG Y Sbjct: 295 ARAVAFLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYS 354 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL---------------- 382 LI+ K ++E ++E+ERF +T++ G+ L + L L +L Sbjct: 355 YLIERKNALQEQCKAEEERFFETIESGMALFNAELEKLRGYSVLSDKSANLRSPTAALTS 414 Query: 383 -------------------------------------NGDVAFKLYDTHGLPLDIMQDIL 405 +G++AFKLYDT+G PLD+ QD+L Sbjct: 415 SKLLVGSLGNADFSSQSLECQDSHKVDSNKTKEAMHFSGEIAFKLYDTYGFPLDLTQDML 474 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL G+D+ F + ++EQ+ R++AH G G + + +L ++G +F+GY+ + Sbjct: 475 RELGL-GVDMQGFEKCMQEQKERSKAHWKGSGDSVKDGDFNALLSEFGENEFVGYESI-- 531 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S + A++ + VE +GQ+ ++ + TPFY E+ Sbjct: 532 ---------------------STESKILALLDSNFKRVESLQAGQEGWMMLESTPFYPES 570 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GG +GD G G FV + + + + Sbjct: 571 GGPIGDKGVLFSLEHSACNNSSLGNHSGDFVDFRGAADSMSSSPLKSTKSPTSNTANTRI 630 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 ++ S + + + + + A++ S + + Sbjct: 631 VDSSKVDSSSPQNIIAKVLDTQKYFGLNLSKVVATSMLKTGDLVKAQVDSSRFEIIKHHS 690 Query: 645 QNLPVVT-------RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 + + + ++ + + V +E + V+S Sbjct: 691 ATHLLHYALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVNDLEQIEALVNSKITESSP 750 Query: 698 HVSSTGEIMLLYIV-----SESSIRAGIRRIEA-----ITGQRARSHLMGQDE--KLKSL 745 V T I +R I + G + ++ Sbjct: 751 QVCETMGIDQAKAKGAMALFGEKYGESVRVITLGDSIELCGGIHIHNTAEIGSFYIVRES 810 Query: 746 ASFLKVSQGNVV----------GRVEEIWEEYRKLQLI-----HAKRKLQLNVEDLSC-- 788 + V + V +E I +L+ AK + L S Sbjct: 811 SVSSGVRRIEAVCGKAAYHYGKAALESIKSLKEQLKAQDVLQGVAKLQNALKEARESANK 870 Query: 789 ----------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 ++ V + + V++KE K ++D + + + + +L+ K S+ Sbjct: 871 AKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKDIIDRAKNENEK-VAILLVTESGGKVSL 929 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP--NGNKADQAIAGVASFL 896 V + A + A++L GG GGGR A +GG NK +A+ + Sbjct: 930 TAGVKG--VSSLKAGAWVKQVAQIL-GGNGGGRDDFATAGGKVTESNKVQEALDLAKNIA 986 Query: 897 KK 898 ++ Sbjct: 987 RE 988 >gi|27904852|ref|NP_777978.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427399|sp|P59420|SYA_BUCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|27904250|gb|AAO27083.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 880 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 307/915 (33%), Positives = 480/915 (52%), Gaps = 63/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-KPVYQAV 61 + I FL FF K GH +LP S+LIP NDP+L+FTNSGM FK+IF + Y V Sbjct: 4 TSNEICQMFLNFFYKKGHTILPGSTLIPNNDPSLLFTNSGMNQFKDIFIQKNYNFKYNRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT+Q C+R GGKHND +NVG T +HHTFF+MLGNFSF YFK AI AW LT ++ + Sbjct: 64 TTLQNCLRTGGKHNDFENVGYTPQHHTFFQMLGNFSFRDYFKLDAILYAWKFLTSKEQLN 123 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173 L + +L+ITVY +D E++ +WK I + KII+I DNFW M E GPCGPC+ Sbjct: 124 LSKEKLWITVYQDDLESYNIWKNIIKIDKHKIIKIGNKYNSSDSDNFWQMGEIGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G +PG +PG++ R++EIWN+VF+QF + + + L + +DTGMGLER Sbjct: 184 EIFYDYGNTLPGTIPGNNGCNVPRFVEIWNIVFIQFNKLSNGKLIKLTESYVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ V+ T+NY+IDLFK LI+ +++ + + VI DH+R+ SF+I++ I+P Sbjct: 244 ISAVINNVTSNYEIDLFKPLIKHILELSTV--NTPKNKSIYVIADHIRACSFIISENIIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE GYVLRRI+RRA+ + LG + L+P L MG P L + + IE L+ Sbjct: 302 SNEKHGYVLRRIIRRAIRHGHNLGIKSLFLHKLIPTLINTMGKFNPVLKKQQNKIENVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+++F +TL++GL LL L + +L+G +AF LYDT G P+D+ DI ++ Sbjct: 362 LEEQKFIETLEKGLKLLHKELKQIQPKHVLSGKLAFNLYDTFGFPIDLTIDICKEHNISI 421 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 + F + L + + + T + T F+GY + + Sbjct: 422 NIME-FKRYLNQHKQNSIN---KNFLNTRNAYYIEDNNINIKTHFVGYQFNKTQSIINNI 477 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +K + Q + ++TPFY E+GGQ+GD+G Sbjct: 478 IIKNNKKTL----------------------QINDYQNSILFLNETPFYGESGGQIGDSG 515 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + K I H + G L ++ I+ R+ + INH+ATHL Sbjct: 516 IIHNKTGKFIV-NCTKMFGNIIGHVGTLASGYLNIHDTVCAEINLPKRKSIQINHTATHL 574 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH +L ILG HV Q GS I+ L+FD +H+ P+ E++ +E+ +N I +N+ V T Sbjct: 575 LHASLRKILGKHVFQKGSFISDQSLKFDFSHNAPMNLREIQEVENIINKKIQKNISVSTT 634 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + ++ AL KY D+VR++S+ S LCGGTH TG+I L I S Sbjct: 635 LTTLQEIQNKKVMALFQDKYKDKVRMISI-----NDFSVELCGGTHTKYTGDIGLFKITS 689 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E SI +GIRRIEA+TG+ A S + Q++ + ++A+ L N+ + ++ L+ Sbjct: 690 EISISSGIRRIEAVTGKHAISIIHHQEKTINNIANMLNSKTNNIEQTITKLLNNNIHLKK 749 Query: 773 IHAKRKLQ---LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 Q V LS H I DVN + + + L++++D L+ + + +++ Sbjct: 750 QIYTLYNQNIYNIVNSLSKHNILIKDVNIIIKNLKNENLLSLRNIVDKLKNRFK-CSVII 808 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLS------AKVLGGGGGGGRPHMAQSGGPN 881 + K+ +++ VT ++ DR +A+D+ ++A+ G N Sbjct: 809 ISSIINNKSIIIVGVTRNVTDRISALDILNKLTKKLGGRGGGKN-------NIAEGGIKN 861 Query: 882 GNKADQAIAGVASFL 896 + + +++ Sbjct: 862 LISLPIELKKIKTWI 876 >gi|154321327|ref|XP_001559979.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10] gi|150852076|gb|EDN27268.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10] Length = 952 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 293/965 (30%), Positives = 458/965 (47%), Gaps = 104/965 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-----KPVYQAV 61 +R FL FF+KN H ++PSSS++P NDPTL+FTN+GM FK IF G + Sbjct: 15 VRKQFLSFFEKNAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDDMAQLKRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK DLD+VG+ + HHTFFEMLGN+SFG YFK AI +AW+LLTK + LD Sbjct: 75 VDTQK---------DLDDVGKDSYHHTFFEMLGNWSFGDYFKADAIGMAWELLTKVYGLD 125 Query: 122 QRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA LW K +G+ D I+ DNFW M ETGPCGPCS Sbjct: 126 SDRLYVTYFEGDAENNVPADTEAKNLWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCS 184 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN+VF+QF++Q + LP IDTGMG ER+ Sbjct: 185 EIHYDRIGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERL 244 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSF 284 +VLQ+K++NYD D+F L ++V G +RV+ DH+R +F Sbjct: 245 VSVLQDKSSNYDTDVFSPLFAKIQEVTNARPYTDKYGKDDTDGIDTAYRVVADHIRLLTF 304 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I+DG +P NEGRGYV+RR++RR YAR E +LPAL +MG +PE+++ Sbjct: 305 AISDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVK 364 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400 + ++E L E+E F +TLDRG + + + K L+G ++LYDT G P D+ Sbjct: 365 KQQDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RG + + +E + +AR S + + + Sbjct: 425 TKIMAEERG-----LETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQI--------- 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 + + ++ I ++ + + ++ D+ Sbjct: 471 ------AELDNMGIPRPNDDAKFSKGDSTGKIQLIYDGKNFLKSTADLPNDKPFGILLDK 524 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ+ DTG I DG+ + G VH+ ++ G + ++ D Sbjct: 525 TNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYGGYIVHNGYMDYGDFKAGDEVICEYDE 584 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R+ + NH+ TH+L+HAL LG ++Q GS + + LRFD +H +T ELK +ED Sbjct: 585 LRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHKAQVTLPELKKVED 644 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVR-----------VVSVEYED 685 + N I QN + ++ + G A+ G Y + VR + + + Sbjct: 645 SANSYIKQNCKIYSKDVDLDIAKGIEGVRAVFGETYPNPVRVVSVGVEVDVLLAEPKNPE 704 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------------ 733 S CGGTHV TG I L IV ES I GIRRI A TG A Sbjct: 705 WRKVSVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAHEVQRIAMEFGKRI 764 Query: 734 -------HLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 H + +++++KS + L +++ ++ + ++ ++ Q K + + Sbjct: 765 AALDAMPHGVEKEQEVKSTQNDLNHLTISVLAKEDLKKKFTKVQKDVLDEQKKKQKAESK 824 Query: 781 LNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 ++ ++ +++ + +SK + VM+ + K + + L G S + Sbjct: 825 TALDTVTAYFADSKNKDSTAYIAQLPISANSKAIADVMNHFKSKAKDKTVYLFGGSASEG 884 Query: 836 ASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 A V + V T+ +A A ++V+GG GG P G N +K + A+A Sbjct: 885 AVVHGVYVGTDAASKGVSAEQWAAAVSEVVGGRSGGKEPTR-TGQGTNPDKIEDAVAVAE 943 Query: 894 SFLKK 898 + + Sbjct: 944 KWFAE 948 >gi|83319899|ref|YP_424149.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535930|sp|Q2SSW4|SYA_MYCCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83283785|gb|ABC01717.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 896 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 285/935 (30%), Positives = 469/935 (50%), Gaps = 102/935 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + + IR +L+FF H L SLIP +DP+L++ NSG+ K F G++ P Sbjct: 1 MKKLSTNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT + Sbjct: 61 PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKN 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF Sbjct: 117 YFDIDKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIF 175 Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE I L E +RYIE+WN+VF QF LP+ +IDTG GLE Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDH 278 R A++ Q N++ D+F I+ EQ+ KY +N N +VI DH Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADH 295 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R++ F I+DG+ P N+ RGY++RR++RR+ + LG + + L+ ++ M YP Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYP 355 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 L+ K L+E+T++ E+E+F KTL +G LL+ ++ ++ A L++++G P+ Sbjct: 356 YLVDKKSLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + +I +DI F + LE+ + R L + + F+ + ++F Sbjct: 413 EQTIEIS-ELSNVTVDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G+ + ++ V + + VE Q+V V+ D+T Sbjct: 470 GWSEISRD----------------------NAKVIYMFTDQKQVESITD-QEVFVILDKT 506 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G D ++ + DVQ+ + H I + L+ + +D + Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNI-HRIKVQDTLKLNDLINCRVDEE 565 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHS TH++H+AL +LGS V Q+GS +GLR D T+ + T+ EL ++ Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGSSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625 Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V + I + T + E+++ A A KY++ VRV+ G SS LCGGT Sbjct: 626 VLEKIKNKVDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGT 680 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLAS--------- 747 HV++T EI I S +G+ RI+ +T + +L Q + K A Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQN 740 Query: 748 --FLKV---------------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH- 789 LK ++ N++ ++++ ++ R L + K+ L + Sbjct: 741 KDLLKNDQLENIYLEIKNITINKDNLI-LIKDLLDKLRDLNKDYDKKVNDLITANKLLKY 799 Query: 790 -------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +VN + ++++ ++LK + D L+ K I++L+ + E +++ V Sbjct: 800 KDLTPSLNKDNVNEIKLETTDLNIRDLKQLADDLRNKYNDLIVILLSSTNENN-FIVVAV 858 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ L +++ A+D+ GGG ++AQ Sbjct: 859 SQSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891 >gi|291519140|emb|CBK74361.1| alanyl-tRNA synthetase [Butyrivibrio fibrisolvens 16/4] Length = 795 Score = 622 bits (1603), Expect = e-175, Method: Composition-based stats. Identities = 295/823 (35%), Positives = 436/823 (52%), Gaps = 50/823 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151 MLGNFSFG YFK AI +W+ LT+ LD RLY ++Y EDEEAF++W K G++ ++I Sbjct: 1 MLGNFSFGDYFKHEAIAWSWEFLTEVLKLDPNRLYPSIYGEDEEAFEIWTKEVGVAPERI 60 Query: 152 IRI------TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGERYIEIWNL 203 R DNFW GPCGPCSEI++D+GE G P + +R++E+WN Sbjct: 61 TRFYRDPETGECDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNN 119 Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263 VF QF L + +IDTGMGLER+A V+Q+ + +DID K + +++G K Sbjct: 120 VFTQFNGDGHGGYEELAQKNIDTGMGLERLAVVMQDVDSVFDIDTMKAIRDKICEMSGKK 179 Query: 264 YEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 Y+ + + V+ R+I DH+RSS+FL++DG+ P+NEGRGYVLRR++RRA + R LG Sbjct: 180 YQVDALDDVSIRLITDHIRSSTFLVSDGVTPSNEGRGYVLRRLIRRAAKHGRALGIQGSF 239 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKD 379 M L + E YPEL + + I +TL +E+E+F KT+D+GL +L G+ L Sbjct: 240 MAKLSETVINECKDGYPELWEKREFIFKTLTAEEEQFNKTIDKGLEILAGMEEKLVAAGS 299 Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439 + L+G+ FKLYDT+G P+D+ +IL +G D F +EEQR +ARA Sbjct: 300 KELSGEDTFKLYDTYGFPVDLTAEILEEKGFT-YDAAGFEACMEEQRQKARAARKETNYM 358 Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 + + + ++F+GYD + Sbjct: 359 GADASVYDDIDLSVTSEFVGYDNTTSESTVTVLTTETE---------------------- 396 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 IV+ G ++ +TPFYA GGQ+GDTG + D K G H Sbjct: 397 -IVDTLAEGMIGTIIVPETPFYATMGGQIGDTGVISTANGEFTVKDTIKLKGGKIGHVGE 455 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 + G+++ + LT+D + R ++ NHSATHL+ AL +LG+HV Q GS D RF Sbjct: 456 MTSGMIKVGEKVTLTVDAERRARICKNHSATHLMQKALREVLGTHVEQKGSYQDADRTRF 515 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 D +H +TS E+ +E VND IA+ L V T IM+ ++A SGA AL G KY + VRVV Sbjct: 516 DFSHFSAMTSEEIAKVEKMVNDKIAEGLAVTTAIMSIDEAKKSGAMALFGEKYGETVRVV 575 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + G S LCGGTHVS+T EI I+SES + AG RRIEAITGQ + + Sbjct: 576 KM-----GDFSVELCGGTHVSNTSEISAFKILSESGVAAGTRRIEAITGQAVFEYYADLE 630 Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794 KL + A+ LK V ++ + ++ ++ K + + S ++ V Sbjct: 631 AKLNAAAAALKCKPSEVEEKIAHLQKQLKETNSELESLKAKAAQAAVGDVMDSVVEVKGV 690 Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV-VTEDLLDRFNAV 853 ++ ++ VD L+ + D L+ K+ G+I+L + K +++++ +A Sbjct: 691 KLLATSVTGVDMNGLRDLGDDLKTKLGEGVIVLAS-DCDGKVNLVVMATDAAQAAGAHAG 749 Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +L + A +GGGG GGRP+MAQ+GG N A+ S L Sbjct: 750 NLIKAIAPKVGGGG-GGRPNMAQAGGKNPAGIADALNEAKSVL 791 >gi|162447763|ref|YP_001620895.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A] gi|205829962|sp|A9NGN9|SYA_ACHLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161985870|gb|ABX81519.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A] Length = 851 Score = 622 bits (1603), Expect = e-175, Method: Composition-based stats. Identities = 311/928 (33%), Positives = 458/928 (49%), Gaps = 112/928 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR T+L FF+ GH + PS+SLIP +DPTL++ N+G+ P K F G E P + + Sbjct: 1 MTSEQIRQTWLNFFKDKGHIIEPSASLIPVDDPTLLWINAGVAPLKKYFDGTETPKSKRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T +QK +R ND+DNVG+T RHHTFFEM+GNFS G YFK+ AI+ ++LLT K FD Sbjct: 61 TNIQKSIRT----NDIDNVGKTARHHTFFEMMGNFSIGDYFKKEAIEFGFELLTSPKYFD 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + +LY+T Y D EA W K+ G+ D +I + NFW + GP GP +EIFFD+ Sbjct: 117 IPLDKLYMTYYPTDVEAKNTWLKL-GVKEDHLIPV--EGNFWEIG-AGPSGPDTEIFFDR 172 Query: 180 GECIPGGLPGSSEEG---ERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233 G P + ER+IEIWN+VF Q+ K E LP +IDTG GLER Sbjct: 173 GTSYDLRGPELIRDDIENERFIEIWNIVFSQYNADPKLKRSEYKELPNKNIDTGAGLERF 232 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ N++ DL +I E ++G+KY+G + +VI DH+++ F I+DG + Sbjct: 233 ACVLQGTKTNFETDLHYPVILKVESLSGVKYDGQ--MAFKVISDHIKTLVFAISDGANLS 290 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ Y + +G+ P + L+ + M + Y LI+ +++++ + Sbjct: 291 NEGRGYVLRRILRRAVKYGKSIGFDAPFLHLLVDTVVDMMSNFYTNLIETAVIVKKIILK 350 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F T+ G L + L+G+ AFKLYDT+G P+++ + G+ + Sbjct: 351 EEEKFFSTILDGEKHLLQSIKD----GKLSGEDAFKLYDTYGFPIELTIEYAEEHGIT-V 405 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 DI FN+ALE Q+SR+R S + +L ++F+GYD L+ Sbjct: 406 DIKGFNEALEVQKSRSRDARKVTHSMKGQD--EALLNFDVPSEFVGYDYLQT-------- 455 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V + QG +V D+TPFYA +GGQ+ DTG Sbjct: 456 ---------------ESKVIKVFDQG-------------IVLDKTPFYANSGGQISDTGS 487 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G +R I + + E ++ ++ R NH+ATHLL Sbjct: 488 INGLVVRDVIKLPHGQHLHLI------ETDAFTEGDEVLCIVNQDKRHHTMKNHTATHLL 541 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 + AL LGSHV Q GS L FD+ H + I E+ ++E V I + + VVT + Sbjct: 542 NQALKDTLGSHVKQQGSYNGDLKLTFDINHYETIKDEEILTVEKIVQQKIKEQIDVVTHV 601 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + ++A GAA G KY D VRVV D G S CGGTHV +T +I I S Sbjct: 602 LPIDEAKKLGAAMQFGEKYGDIVRVV-----DVGSWSMEFCGGTHVKNTSDIKNFMITSV 656 Query: 714 SSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASFLKVSQGN-----VVGRVEEIWE 765 SI +G R EAITGQ + + + + + +K N + + Sbjct: 657 ESIGSGTYRFEAITGQVLSQVKKIVQNLLDMIHQHIEKIKSLDENHNLKPLPELTGSYQD 716 Query: 766 -------------EYRKLQLIHAKR---KLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 E + ++ + ++ L + I ++ + L Sbjct: 717 IINLRLYNQYISNESKVVEKQLEAKLIDQIILQADTFIPKTIEPTTYIYS--DNLPQSSL 774 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 K ++D L KI++ ++L+ IS E KAS L+ + + A ++ KVL G GG Sbjct: 775 KPLIDVLYDKIKADTVVLLNIS-EDKASYLVKSSVN-----EARNVINELNKVL-DGRGG 827 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897 G+P AQ G QA+ V FLK Sbjct: 828 GKPDFAQGG-------TQALDKVQMFLK 848 >gi|330897295|gb|EGH28714.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 642 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 310/680 (45%), Positives = 409/680 (60%), Gaps = 48/680 (7%) Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 Y T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT Sbjct: 1 YTRAVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSE 60 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGP 168 K +L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGP Sbjct: 61 KWLNLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGP 120 Query: 169 CGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CGPCSEIFFD G I GG PGS E+G+RYIEIWN VFMQF + LP S+DTG Sbjct: 121 CGPCSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 180 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287 MGLER++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIA Sbjct: 181 MGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIA 238 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+LP+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + I Sbjct: 239 DGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHI 298 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E L+ E+E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI Sbjct: 299 ERVLKGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARE 357 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 R L +D F + ++ QR RAR+ S + SL + ATQF GY G Sbjct: 358 RNLT-LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG-- 408 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S+ V A+ ++G+ V G++ V+ D TPFYAE+GGQ Sbjct: 409 ---------------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQ 447 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G R ++D K F+HH +V G L + + + R +NH Sbjct: 448 IGDSGFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNH 506 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N Sbjct: 507 SATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNT 566 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V+T + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L Sbjct: 567 EVMTEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIAL 622 Query: 708 LYIVSESSIRAGIRRIEAIT 727 IVSE + AG+RRIEA+T Sbjct: 623 FKIVSEGGVAAGVRRIEAVT 642 >gi|50365429|ref|YP_053854.1| alanyl-tRNA synthetase [Mesoplasma florum L1] gi|59798527|sp|Q6F0K3|SYA_MESFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50363985|gb|AAT75970.1| alanyl-tRNA synthetase [Mesoplasma florum L1] Length = 892 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 292/936 (31%), Positives = 458/936 (48%), Gaps = 105/936 (11%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF++ H L SLIP DP+L++ NSG+ K F G++ P Sbjct: 1 MKKLTTNEIRKMWLDFFKEKNHHFLEPVSLIPVEDPSLLWINSGVATLKPYFDGRKTPPS 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT K Sbjct: 61 PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAISFAWELLTSDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LYITV++ED EA++ W G+ D I R+T + NFW + + GPCGP +EIF Sbjct: 117 WFAIPVEKLYITVFNEDIEAYEYWINDIGIKQDHIFRLTRDTNFWDVGQ-GPCGPNTEIF 175 Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 FD+GE G E +RYIEIWN+VF QF LP+ +IDTG GLE Sbjct: 176 FDRGEKWDKENIGPRLLAEDIENDRYIEIWNIVFSQFNNDGFNNYSELPRKNIDTGAGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIV-----------NHRVIVDH 278 R+A++ Q+ N++ D+F I+ E + KY N +VI DH Sbjct: 236 RIASIFQDTPTNFETDIFWPTIKQIENICDANFKYSIENYFDEKAEQTKINTAFKVIADH 295 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R++SF IADG+ P N+ RGY++RR++RRA+ LG P + L+ + M YP Sbjct: 296 VRATSFAIADGVFPGNKDRGYIIRRLIRRALMKGMELGINGPFLSTLVINVIDVMKDFYP 355 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 L++ + LIE T+ E+E+F KTL +G L+ ++ + D+ + G A L++++G P+ Sbjct: 356 YLLEKQNLIETTILIEEEKFLKTLSKGYEALNKMIEN---DKKVTGKNALLLFESYGYPI 412 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + + ++I FN LE+ + +AR +K + ++F Sbjct: 413 EQTI-EIAEDRKVKVEIEEFNSLLEQAKEQARNARK--DLKAWDKQNEIFTKINVESEFT 469 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G++ ++ + I EI+ EA ++V V+ D+T Sbjct: 470 GWEETSHK----------------------NAKIVYIFTDDEILTEATD-KEVYVILDKT 506 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D G + R ++ D Q+ + H I+ G ++ + +D Sbjct: 507 PFYAEKGGQAADKGYLVNKEARCEVIDTQQGPNHQHI-HKILLDGSIKIGDQIDAFVDET 565 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHS THL+H AL +LG V Q+GS GLR D T++ I + EL + E Sbjct: 566 KRTLTMKNHSGTHLIHSALRVVLGETVMQSGSYNDEHGLRMDFTYNDSIKAEELIAAEKL 625 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V D I + + + +DA++ GA A KY+D VRVV G SS LCGGT Sbjct: 626 VLDKINEKINREVYFCSMKDAVSKYGALAFFTEKYDDIVRVVKF-----GDFSSELCGGT 680 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGN- 755 HV +T +I I S +G+ R++ +T ++A +L + KL L N Sbjct: 681 HVDNTIDIEDFMITGLESKGSGVYRVKCLTSKKAINEYLNTEFNKLLKLIQEQNSKYENT 740 Query: 756 ------------VVGRVEEI--WEEYRKLQLIHAKRKLQLNVEDLSCHKI---------- 791 V V + E ++L+LI K L + + + Sbjct: 741 KLIQADQNIENIVKESVTKTISKESIQELKLILEKLSAALKIYERKIEDLLTSKKLEQFK 800 Query: 792 --------ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 V + ++ ++ K++K+++D + K + II+L ++E V++ V+ Sbjct: 801 AFEPITNDKGVGTIEQQVNGLNIKDMKNLVDEYKNKFEKLIIILTSETEEGN-FVVVGVS 859 Query: 844 EDLLDRFNAVDLAR--LSAKVLGGGGGGGRPHMAQS 877 E + + ++A+++ + + GGG +AQ Sbjct: 860 EKIQNEYSAIEIFKNLTISP-----KGGGNSSLAQG 890 >gi|261749137|ref|YP_003256822.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497229|gb|ACX83679.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 887 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 301/925 (32%), Positives = 468/925 (50%), Gaps = 82/925 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+FFQ H+++PS + +DPTL F N+GM PFK F G +KP Y + VQK Sbjct: 6 IRDTFLDFFQNKKHKIIPSFPIYLKDDPTLFFINAGMNPFKEYFLGHKKPEYTRIVNVQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+NVG N HHT FEMLGN+SFG Y ++ I+ AW+LLTK +++ ++ LY Sbjct: 66 CLRVSGKHNDLENVGHDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLTKVYNIPEKNLY 125 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 I+++ DE E F+ WK ++ + ++ +NFW M GPCGPCSEI D Sbjct: 126 ISIFIGDEKEGLSMDKETFQHWKTF--INKENLVFFGKEENFWEMGSIGPCGPCSEIHID 183 Query: 179 QG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + G +++ + IEIWNLVF++F +++ L +DTGMGLER+ Sbjct: 184 LRNKEEKEKIPGKYLINKKNPKVIEIWNLVFIEFYRRSDGILEKLSTKHVDTGMGLERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 VLQ K ++YD D+F +I+ ++ K E N ++ R++ DHLR+ F I DG LP Sbjct: 244 MVLQGKFSSYDTDIFFPIIRDIKESLGGIYKEEFNQDISIRIVADHLRALVFSIFDGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N G GYV+RR++RRA+ Y R L EP + + +L M +++PEL + K I+ + Sbjct: 304 SNNGAGYVIRRLLRRAVIYVTRFLYQKEPFIYKFVDSLVRRMKNSFPELEKKKDYIQNVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E+ F + L++G + ++ + ++L+G F+LYDT+G PL + + Sbjct: 364 KEEESSFFQVLEKGYERIQHIILKAKERNQKVLDGKSLFQLYDTYGFPLKLSKIFAEENN 423 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ---FIGYDLLRGS 466 L ID SF + L +Q + S + + W + ++ FIGYD L Sbjct: 424 LY-IDEKSFEKRLLKQ----KEKSHKKKNIIIKNDWIKIHSNQFFSEKNNFIGYDFLECH 478 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RK+ ++ E+VF +TPFY E GG Sbjct: 479 ILIIQYRKIE--------------------------DKIKENHYYELVFSKTPFYPEGGG 512 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 QLGDTG D ++ I +K+ I V + + ++ R+++ N Sbjct: 513 QLGDTGFIKNDLEKIFIEKTKKENSIIIHI---VRKLPVNIYSRFQAIVNKNRRKKIEKN 569 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H++THLLH +L ILG H+ Q GS + D LRFD +H K IT EL IE+ V +I N Sbjct: 570 HTSTHLLHFSLKKILGEHIQQKGSYVGEDYLRFDFSHPKKITIEELFQIEEMVQKLIFSN 629 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LP+ R + ++AI G + KY VR ++ SS LC GTH +TG I Sbjct: 630 LPLEERRSIPLQEAIKKGYNGIFYEKYEKEVRGITFGD------SSELCIGTHAKNTGCI 683 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + IVSE S+ GIRRI+A T ++A +L + KSL L + + + + + E Sbjct: 684 QVFSIVSELSVSYGIRRIKAFTSEKAIQYLKSIHFQEKSLRKILN-NTESTIKSIFSLQE 742 Query: 766 EYR-----------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 + + + I K L ++ S I D++F + D K ++ Sbjct: 743 QNKKLKKKLEKLQFQQIKIFKKEYLLKAIQLPSITYICDISF---EEKDFDLNLFKKIIL 799 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRP 872 L+ I S + M+VG K+KK + I +++ ++ +A + R + + G G+ Sbjct: 800 DLRNVI-SNLFMVVGFIKDKKPIIFISISDHIIKNKNIHANQIIRKMSDYIHGKSW-GKS 857 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 A + G N N + +LK Sbjct: 858 FFATAIGSNQNGLSLVLKTTKEYLK 882 >gi|299115131|emb|CBN75498.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus] Length = 1122 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 298/984 (30%), Positives = 440/984 (44%), Gaps = 105/984 (10%) Query: 3 NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59 +V+ +R TF++ F+ H PSS ++P NDP+L+F N+GM FK +F GQ P Sbjct: 153 SVTKVRQTFIDHFKSKREHTFYPSSPVVPVNDPSLLFANAGMNQFKPVFLGQTDPSSPLA 212 Query: 60 ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 QKC+RAGGKHNDLD+VGR HHTFFEMLG +SFG YFKE A++ ++ L + Sbjct: 213 GLKRAVNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGTWSFGDYFKEEAVEWGFEALNE 272 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 F L RLY T + DE E LW K+ L D+++ DNFW M + GP Sbjct: 273 VFGLPADRLYATYFGGDEELGLAPDLETRDLWLKV--LPEDRVMPGDRKDNFWEMGDVGP 330 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSE+ FD+ + + IEIWNLVFMQF + +LP +DTG+ Sbjct: 331 CGPCSELHFDRI-GGRNAASLVNMDDPDVIEIWNLVFMQFNRDEAGNLKLLPAKHVDTGL 389 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHL 279 GLER+ ++LQ+K +NYD D+F L A + VTG +RV+ DH Sbjct: 390 GLERLVSILQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVGLKDTAYRVVADHA 449 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ SF I DG +PAN+GRGYVLRRI+RRA+ Y + L ++P + E G YP Sbjct: 450 RALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYP 509 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396 EL + + + E ++ E+E F L+RG+ V + GD AF LYD+ G Sbjct: 510 ELREKEAFVMEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSNTIPGDTAFFLYDSMGF 569 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ Q + G+ +D F + Q++R++ + +L Sbjct: 570 PLDLTQVMAEEVGMT-VDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGAD----- 623 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-----------QGEIVEEA 505 S+ +E K + + + V A+ G + Sbjct: 624 -------ETSRLAEEGVKPTDDEAKYTWSTTTGNKVVALFDGETLSTTASQSGGTAAASS 676 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF------VHHAI 559 V ++ D TPFY+EAGGQ+ D+G + D + + +H Sbjct: 677 DDATTVGILLDSTPFYSEAGGQVSDSGKLVVSAGGEDGDDGVIEVADVRMFGGFALHVGR 736 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 + G L S+ +DY RR+++ NH+ TH L++AL + V Q GS +T + LRF Sbjct: 737 LVSGSLSVGDSVRCEVDYDRRRKVAPNHTMTHALNYALRKAVDEGVDQKGSLVTDEKLRF 796 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRV 678 D +H K +T +L+ E V II + V +++ +A + G A+ G Y D VRV Sbjct: 797 DFSHGKALTGPQLEESEAIVQRIIQEEKEVYNQVLPLSEAKSIFGLRAVFGEVYPDPVRV 856 Query: 679 VSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 VSV + + S CGGTHV +T E I E+++ G+RRI AIT Sbjct: 857 VSVGFPVEDMAKDPSREEWATSSVEFCGGTHVGNTREAEAFVITEETAVAKGVRRITAIT 916 Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-------------WEEYRKLQLIH 774 G A+ + + + G + G V R Sbjct: 917 GSAAKEAVAAGEVLKLRAEEVSSLKGGELEGAVASFRRDVDGATLSAGVKGRLRAQGDKL 976 Query: 775 AKRKLQLNVEDLSCHKIADVN----------------FMSHIISEVDSKELKSVMDALQK 818 KR + + + V+ + + DSK +K V+D + K Sbjct: 977 LKRVAAESKAAAAAAAQSGVDAAVKAAKQAVEEGKTWVVMDVAIGADSKAVKRVLDGVSK 1036 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV----DLARLSAKVLGGGGGGGRPHM 874 M L+V + + R S GG G GGRP Sbjct: 1037 VAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRSSLAACGGRG-GGRPTS 1095 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ P+ + D+ +A +FL + Sbjct: 1096 AQGQAPDAGEMDKGMAAAIAFLDE 1119 >gi|325068847|ref|ZP_08127520.1| alanyl-tRNA synthetase [Actinomyces oris K20] Length = 782 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 284/804 (35%), Positives = 431/804 (53%), Gaps = 64/804 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+ +L++F N HE+ PS SL+ P+++FT +GMVPF G E+ + Sbjct: 1 MRTSEIRSRWLDYFAANEHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEEAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 +VQKC+R ND+DNVG T RH TFF+M GNFSFG YFKE AI AW LLT Sbjct: 60 ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD RL++T+++ED+ + W + G+ A++I + D WS + GP G C EI Sbjct: 116 GYGLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230 +D+G P G P +G+R++EIWNLVF +F + + L + +IDTG GL Sbjct: 176 YDRGPAYGPDGGPAVDIQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279 ER+A ++Q+K N Y+ID +I+A+E+++G Y ++ V RV+ DH+ Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKVYGRGSAGPEAGEAYHDDVRMRVVADHV 295 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 RS+ LI+DG+ P N+GRGYVLRR++RRA+ RLLG E M LL M S+YPE Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPE 355 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDT 393 L I E E++ F +TL G +LD ++ K +++G AF+L+DT Sbjct: 356 LETGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGSSGRPLVSGKSAFELHDT 415 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451 +G P+D+ ++ +G +D +F + EQ+ RARA + +G + F EK Sbjct: 416 YGFPIDLTLEMAAEQG-VDVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 G + F+GY + + V I+ G + +V Sbjct: 475 GGGSTFLGYTE-----------------------SSADATVTGILVDGVPQSVVTAPAEV 511 Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 EVV D+TPF+AE GGQL D G + DG +++ DVQ +G+ VH + G + Sbjct: 512 EVVLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEK 571 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ID R ++ H++TH++H AL I+ + +Q GS +P +RFD H + S Sbjct: 572 AFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASD 631 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 ++ IE+ VN ++++L V IM+ + A A+GA AL G KY VRVVS+ GG S Sbjct: 632 QISGIEERVNARLSEDLAVTDEIMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWS 687 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LC GTHV STG I + ++ ESSI +G+RRI+A+ G+ A + + + L++ + Sbjct: 688 KELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQAKEHALVSQLSTMVG 747 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIH 774 ++ RVE + + + Sbjct: 748 GRPEDLPERVESLMARLKDAEKRL 771 >gi|325120127|emb|CBZ55681.1| hypothetical protein NCLIV_061050 [Neospora caninum Liverpool] Length = 1034 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 292/971 (30%), Positives = 438/971 (45%), Gaps = 120/971 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + ++R+ +++FF+ +GH + PSS +IP D TL+F N+GM FK IF GQ Sbjct: 25 SGEAVRSAYVDFFEVHGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQVDRNSPLSK 84 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 VT QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ Sbjct: 85 LRRVTDTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKRDAIAWAWQLLTEV 144 Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY + + D EA LW + L ++++ +NFW MA+TGP Sbjct: 145 YKIPKDRLYASYFGGDPRLPTCPPDNEARDLWLQY--LPPNRVLPFGAKENFWEMADTGP 202 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278 GLER+A+VLQ+K +NYD DLF L ++T + + + +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFIALFDKIAELTPGLRPYEGKIGEEDKDLIDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+ + + +GS + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMKEGAFPQLVSVVVSLLGSTF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVIRILHKEEQQFSRTLDNGVERFKKVANSLKAKGVKVFPGSEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454 PLD+ Q + GL +D F + + R + G+G + Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFERKFDAHRVASENTSFKQGGAGAVYALPPDQHHLLAK 500 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ------QGEIVEEAVSG 508 + + V + V AI V S Sbjct: 501 NRNLAPTDDSAKYQWNVKDLAALVAQDAVEAAPVKAKVAAIWDGKRFAPDAAAVASPTSE 560 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 V V+ D+T FYAE GGQ+GD G + G ++ D QK + +H V +G L+ Sbjct: 561 NFVAVILDKTCFYAEQGGQVGDVGRLVDLSSGAEFEVIDSQKSGDY-VLHIGTVSKGTLK 619 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------------------------- 600 LV +DY R +L+ +H+ THLL+ AL + Sbjct: 620 EGSELVPLVDYVRRFKLAQHHTGTHLLNFALREVLVRKMRKNAEGGDKREDTNGLHIRES 679 Query: 601 --------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 + Q GS + LRFD KP+ + ++ ++E+ V D IA+ PV R Sbjct: 680 CLNERELSDEEDIQQKGSLVEEKRLRFDYAGEKPMENEDILAVENVVKDCIARERPVHYR 739 Query: 653 IMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGG-------------VHSSALCGGTH 698 + E A+ G A+ G Y D VRVVSV S LCGGTH Sbjct: 740 EIALEQAMKIPGLRAVFGEVYPDPVRVVSVGSPIEDLVELAVSGKGETPFASIELCGGTH 799 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVS 752 + + +I I+SE S+ G+RR+ A+TG A +E K+ AS L Sbjct: 800 LHNAAQIQDFCIISEESVAKGVRRVVAVTGDPALEARKELEELEKAFASLAAAPRELPAL 859 Query: 753 QGNVVGR------------------VEEIWEEYRK-LQLIHAKRKLQLNVEDLSCHKIAD 793 + V+ V+++ + + L+L A+ K L ++ + Sbjct: 860 EKEVLKARGLLDSAGPLPLVGKRVLVKQLEQAQKSLLELQKARSKELLKEAKRLGEEVGN 919 Query: 794 ----VNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847 F+ + ++ D K L + L + +LV + + + V Sbjct: 920 EHKTKPFLVLNLPQLHGDGKALDTASQTLHQTAPELPFLLVTANPATGTAAIAFVPASCG 979 Query: 848 DRFNAVDLARL 858 A Sbjct: 980 KNAVAAPWLNA 990 >gi|330752142|emb|CBL87102.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium] Length = 834 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 290/883 (32%), Positives = 451/883 (51%), Gaps = 75/883 (8%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MF N+GM PFK+IF G +K V QKC+R GKHNDL+ VG HHT FEMLGN+ Sbjct: 1 MFVNAGMNPFKDIFIGSKKSENGRVANTQKCLRVSGKHNDLEEVGHDTYHHTLFEMLGNW 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSA 148 SFG YFKE AI AW+LLT+ + LD+ R+YITV++ D ++ K W K + + Sbjct: 61 SFGDYFKEEAIDWAWELLTEVYGLDENRIYITVFEGDLSDGLKRDIDSEKAWLK--HVQS 118 Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC----IPGGLPGSSEEGERYIEIWNLV 204 +I+ + DNFW M E GPCGPCSEI FD G +E+ + IE+WNLV Sbjct: 119 SRILSGSKKDNFWEMGEVGPCGPCSEIHFDLRNEAERKKIDGALLVNEDHPQVIELWNLV 178 Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264 F++F++ + LP +DTGMGLER+ + K +NYD D+F I ++ +Y Sbjct: 179 FIEFQRVSDGNLSPLPDKHVDTGMGLERLVRAIGMKESNYDTDIFTPYINKLSDLSNKEY 238 Query: 265 EGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL 321 + ++ RVI DH+R+ S IADG LP+N G GYV+RRI+RRA+ Y LG+ +P Sbjct: 239 GTDETVDISFRVISDHIRAVSMAIADGQLPSNIGAGYVIRRILRRAVRYGYSNLGFRKPF 298 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 ++ LLP L + + +PEL ++ +R E+ F +TL+ GL LD +S K+ I Sbjct: 299 LIDLLPVLSSSLSKTFPELEIQISMVTAVIREEELSFLRTLESGLKRLDDAISE-SKNAI 357 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 ++G AF+LYDT+G PLD+ + I + +D F+ ++ Q+ R+R+ S Sbjct: 358 ISGIRAFELYDTYGFPLDLTKLICSEK-RYNVDEDQFHLEMKNQKDRSRSA-----SSKK 411 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 W + G +FIG++ + R + Sbjct: 412 VGDWIEMSSGRGD-EFIGFEANSSKSKLIRYRHI-------------------------- 444 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 E+ G+ ++V+ TPFY E GGQ+GD G +G + + + K+ I H Sbjct: 445 --ESSKGKSIQVLIAPTPFYPEGGGQVGDIGIIKFEGQEINVKETTKETGMIIHHL---Y 499 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 ++ ++ +NR ++S NHSATHL+H+AL ILGSHV Q GS + +G RFD Sbjct: 500 DEPKVWSKNVFAQVNMKNRERVSENHSATHLVHYALRKILGSHVEQRGSLVHAEGFRFDF 559 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVS 680 +H + +++A++ SIE V +I + + A GA AL G KY D VRVV Sbjct: 560 SHFQKVSNAQINSIESLVRSLITDKIKTQIHNEIPINSAKKMGAMALFGEKYGDFVRVVQ 619 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 S LCGGTHV T I+ I SES + AGIRRIEA++G A +L+ + + Sbjct: 620 FGE------SVELCGGTHVEDTSNILTFIIKSESGVAAGIRRIEALSGAAAIDYLLDKSK 673 Query: 741 KLK-SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--- 796 + +L +V +++ + + ++ Q+ V +L I Sbjct: 674 RYDLALKESNQVDPEE---KIKSLKVQVLGIEKKLISFN-QMRVSNLKSELIKSSKDYGT 729 Query: 797 --MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854 + I +++S +K ++ ++ + +++L+ + + + + + V D NA + Sbjct: 730 LKVVAEIIDLESSYVKDLVFLIKDNYPTAVVLLLSVIGD-RVQMHLGVGSDSTPHVNAGN 788 Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + + + GG GGG+P A SGG + + I ++ Sbjct: 789 WVKELSLFIKGG-GGGQPSYASSGGKFPDGVNDLIDEFYKKIE 830 >gi|289444091|ref|ZP_06433835.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium tuberculosis T46] gi|289417010|gb|EFD14250.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium tuberculosis T46] Length = 877 Score = 615 bits (1586), Expect = e-173, Method: Composition-based stats. Identities = 299/886 (33%), Positives = 446/886 (50%), Gaps = 81/886 (9%) Query: 53 QEKPVYQAVTTVQKC-----VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAI 107 + P Y T++Q R G G T RH+TFF+M GNFSFG YFK AI Sbjct: 24 KSTPPYPTATSIQPVHPYPRYRRG---------GITTRHNTFFQMAGNFSFGDYFKRGAI 74 Query: 108 QLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162 +LAW LLT + LD R++ TVY +D+EA +LW++++GL A++I R DN+WS Sbjct: 75 ELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWS 134 Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----- 217 M GPCGP SEI++D+G E RY+E+WNLVFMQ E+ + Sbjct: 135 MGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQIL 193 Query: 218 -ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHR 273 LP+ +IDTGMG+ER+A VLQ+ N Y+ DL + +I +V Y + V +R Sbjct: 194 GPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYR 253 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333 +I DH R+++ LI DG+ P N+GRGYVLRR++RR + A+LLG ++ L+ + M Sbjct: 254 IIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAM 313 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLY 391 G +YPEL+ I +E+ F +TL G L + V S +L+G AF L+ Sbjct: 314 GPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLH 373 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G P+++ ++ GL +D I F + + EQR RA+A + + + Sbjct: 374 DTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVD 432 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE------- 504 GAT+F G+D LR + + I G+ V Sbjct: 433 AGATEFTGFDELRS-----------------------QARILGIFVDGKRVPVVAHGVAG 469 Query: 505 -AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAI 559 A GQ+VE+V D+TP YAE+GGQ+ D G G + R +TDVQK A+ ++VH Sbjct: 470 GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVN 529 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 VE G +++ +D RR + HS TH++H AL +LG + Q GS P LRF Sbjct: 530 VESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRF 589 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 D P+T + +E+ N+ + + V T + A A GA AL G Y D VRVV Sbjct: 590 DFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV 649 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + GG S LCGGTHVS+T +I + I+ ESSI +G+RR+EA G + HL + Sbjct: 650 EM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKER 705 Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADV 794 + LAS LKV V RV + E R + + ++ +I +V Sbjct: 706 ALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNV 765 Query: 795 NFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RF 850 ++ +S + + +L+S++ ++ K+ S ++ L+ + + + D Sbjct: 766 RLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGI 825 Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A DL + A + G GGG+ +AQ G N D A+ V S + Sbjct: 826 RANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 870 >gi|255084804|ref|XP_002504833.1| alanyl-tRNA synthetase [Micromonas sp. RCC299] gi|226520102|gb|ACO66091.1| alanyl-tRNA synthetase [Micromonas sp. RCC299] Length = 945 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 258/755 (34%), Positives = 391/755 (51%), Gaps = 60/755 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61 IR TFL+FF+ H ++PSS ++P +DPTL+F N+GM FK F G P Sbjct: 12 IRQTFLDFFEGKEHTVVPSSPVVPHDDPTLLFANAGMNQFKPCFLGTADPKGPLAKLKRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG +FKE AI AW+LLTK + L Sbjct: 72 TDTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKEEAIGWAWELLTKVYMLP 131 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY T + D+EA ++W K L K++ DNFW M + GPCGPC+ Sbjct: 132 EDRLYATYFGGDPAQGLPPDDEAKEIWLKY--LPPHKVLPFDCKDNFWEMGDVGPCGPCT 189 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ + + +EIWN+VF+QF ++ LP +DTGMG ER+ Sbjct: 190 EIHYDRI-GGRDASDLVNMDDPNCLEIWNVVFIQFNREEGGVLKPLPAKHVDTGMGFERL 248 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284 A++LQ K +NYD D+F + A + VTG + + +RV+ DH+R+ +F Sbjct: 249 ASILQGKMSNYDTDVFMPIFDAIQAVTGAEPYAGKLGAEDVGEKDMAYRVVADHVRTLTF 308 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG P ++GR YVLRR++RRA+ + R LG + L+ + G +PE+++ Sbjct: 309 AIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFATLVKTVVQLFGDVFPEIVKE 368 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIM 401 + + E + E+E FG+TL +G+ + + + + ++G AF L+++ G P+D++ Sbjct: 369 EKRVTEIIAEEEESFGRTLLKGVEQFKKIAAKAKEEGRDTVSGAEAFLLWESFGFPVDLV 428 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + + G+ +D F +A +E + ++RA G L + AT Sbjct: 429 EIMCEENGMK-VDNAGFEEAFKEAQEKSRAAGKKGGG-------RQLLFEAEAT------ 474 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPF 520 + + + + VKAI+ VE + + + +V D+T F Sbjct: 475 ----AWLANNGVPLTDDSHKYAAGSVPEATVKAILTLDGFVESTENVEGPIGLVLDKTSF 530 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+ D G + D + A +H G + ++ +DY R Sbjct: 531 YAESGGQVCDVGVIKSGSASATVEDTKVAAGF-VLHSCDSVDGAVAVGDAVRCLVDYDRR 589 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NH+ TH L++AL +LG V Q GS + + LRFD +HSK +T E++ +E V Sbjct: 590 ANIMPNHTMTHCLNYALRRVLGDSVDQKGSLVDDEKLRFDFSHSKAMTPDEIEKVEALVR 649 Query: 641 DIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY-----------EDGGV 688 D + L V TR + A SG A+ G Y D VRVVSV ED Sbjct: 650 DQVNAKLAVHTREVALAKAKEISGLRAVFGEVYPDPVRVVSVGPSIDDLLGAPASEDWKG 709 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 +S CGGTH+++T + ++SE I G+RRI Sbjct: 710 YSIEFCGGTHLANTSDAADFVLLSEEGIAKGVRRI 744 >gi|239980567|ref|ZP_04703091.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291452426|ref|ZP_06591816.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291355375|gb|EFE82277.1| alanyl-tRNA synthetase [Streptomyces albus J1074] Length = 740 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 288/774 (37%), Positives = 421/774 (54%), Gaps = 51/774 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR+ FL+ F GH +PS+ L P DPTL+F N+GMVPFK TG+ + Sbjct: 1 MRTADIRSRFLDHFTARGHTPVPSAPL-PTPDPTLLFVNAGMVPFKPYLTGEVPAPWPRA 59 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117 T+VQKCVR D++ VGRT RH +FF+M GNFSFG YFKE AI LAW+L T Sbjct: 60 TSVQKCVRTL----DIEEVGRTTRHGSFFQMAGNFSFGDYFKEEAIALAWELSTTPVADG 115 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD R+++TV+ D EA LW++ +GL +I+ DNFWSM GPCGP SE++ Sbjct: 116 GYGLDPARIWVTVHHTDTEARALWRRTAGLPDARIVDRGDEDNFWSMGVPGPCGPSSELY 175 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230 +D+G G G + + +R++E WNLVFMQ E+ + LP +IDTG+GL Sbjct: 176 YDRGPAF-GPEGGPAVDEDRFMEFWNLVFMQDERGEGHGKSGYPILGELPHRNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ERMAT+LQ+K N Y+ID + ++ A+ ++TG +Y + V RV+ DH+R++ L+AD Sbjct: 235 ERMATLLQDKPNLYEIDETRPVLDAAAELTGTRYGSDAAADVRLRVVADHVRTALMLLAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RRA+ R LGY +P + LLP M YPE+ ++ I Sbjct: 295 GVSPTNEGRGYVLRRMLRRAVRSVRQLGYPDPALPALLPVARDLMACGYPEVAESFPRIA 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E +E+E F TL +G +LD ++ + + L G AF+L+DT+G P+D+ ++ Sbjct: 355 EQAYAEEEAFRATLQQGTTVLDTAVAKVRAEGGTALPGAQAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLR 464 +G +D F +E+QR RARA + SG T ++ + G T+++ ++ L Sbjct: 415 EQG-VEVDRAGFTALMEDQRERARADARARKSGGTGDTSALRAVLDASGPTEWLAWEKL- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V+A++ + A +GQ VV D+TPFYAE+ Sbjct: 473 ----------------------TTRATVRAVLGAEGPLPVATAGQLATVVLDRTPFYAES 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ D G G + ++ DVQ+ G+ VH V G L + T+D + R Sbjct: 511 GGQAADAGHLTGASVEAEVVDVQRPLPGLVVHRVRVLAGELAPGDEVEATVDPEWRLGAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH+LH AL +LG Q+GS P LR D +T A +E+ N + Sbjct: 571 QAHSGTHVLHAALRQVLGPAALQSGSYNRPGHLRLDFPWRGALTPAARSEVEEAANQALR 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++LPV R M +A GA AL Y + VRVV + GG S LCGGTHV+ T + Sbjct: 631 RDLPVGVRWMPLAEARELGALALFDETYGEEVRVVEI----GGPWSRELCGGTHVAHTSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 I ++ + E+S+ AG+RR+EA G +L + + LA L + + Sbjct: 687 IGVIALTGEASVGAGMRRLEAAVGIEGFGYLARERDLAAQLAQQLGAPRAELPE 740 >gi|222612529|gb|EEE50661.1| hypothetical protein OsJ_30891 [Oryza sativa Japonica Group] Length = 901 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 288/922 (31%), Positives = 428/922 (46%), Gaps = 96/922 (10%) Query: 43 MVPFKNIFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97 M FK +F G P QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+S Sbjct: 1 MNQFKPVFLGTAAPDAPLGRLRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60 Query: 98 FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149 FG YFKE AI AW+LLT+ + L R+Y T + DE E+ +W K L + Sbjct: 61 FGDYFKEEAIGFAWELLTQVYKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKE 118 Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209 K++ DNFW M +TGPCGPC+EI FD+ + + IEIWNLVF+QF Sbjct: 119 KVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGNRD-AASLVNNDDPTCIEIWNLVFIQFN 177 Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM------- 262 ++ LP +DTGMG ER+ ++LQ K +NYD D+F + A Q+ G Sbjct: 178 READCTLRPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSG 237 Query: 263 ----KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGY 317 + + +RV+ DH+R+ SF IADG P NEGR YVLRRI+RRA+ + L Sbjct: 238 KVGPEDVDKVDMAYRVVADHIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKA 297 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 + L+ MG +PEL + I++ ++ E+E F TL +G + Sbjct: 298 KQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVK 357 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 + G AF L+DT+G P+D+ + + GL+ +D F+ A+EE R +AR G Sbjct: 358 ES---GGTDAFVLWDTYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAG 413 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 S+ AT ++ P S+VKAI Sbjct: 414 EN-------SIVLDANAT-----------AQLRNQGLASTDDSPKYGYKDNDSVVKAIYT 455 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 E V A + +V + T FYAE GGQ+ DTG G +T+VQ A +H Sbjct: 456 GSEYVSAASGDEDFGLVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFAGY-VLHM 514 Query: 558 AIVERGIL--RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 +G + +DY R ++ NH+ TH+L+ AL ILG HV Q GS + P+ Sbjct: 515 GSFTKGSKALSVGDKVACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPE 574 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674 LRFD +H KP+ +L+ IE VN I L V R + DA +G A+ G Y D Sbjct: 575 KLRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPD 634 Query: 675 RVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 VRVVSV ++ S+ LCGGTH+ +T E ++SE I G+RRI Sbjct: 635 PVRVVSVGRKVEDLLANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRI 694 Query: 724 EAITGQRARSHLMGQ------------------DEKLKSLASFLK------VSQGNVVGR 759 A+T + A + ++ + S+ S L + ++ GR Sbjct: 695 TAVTAKHASDAIKDASSIDSEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGR 754 Query: 760 VEEIWEEYRKLQL----IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMD 814 V ++ +E RK + + ++ ++ ++ F + +D+ ++ + Sbjct: 755 VSKLEDELRKAKKKMGEENIQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVI 814 Query: 815 ALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 ++ + + IML + KA + V + +D S L G GGGG+ Sbjct: 815 KVKDQ-KDLPIMLFSTDEATNKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNG 873 Query: 874 MAQSGGPNGNKADQAIAGVASF 895 +AQ G ++ +A+ Sbjct: 874 IAQGQGTEASQLKEAMEVATQI 895 >gi|258575517|ref|XP_002541940.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704] gi|237902206|gb|EEP76607.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704] Length = 931 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 271/950 (28%), Positives = 438/950 (46%), Gaps = 137/950 (14%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAVTTVQKCVRAGGKHNDL 77 +PSSS++P +DPTL+F N+GM +K+IF G P + QKC+RAGGKHNDL Sbjct: 42 VPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAHLKRAHNSQKCIRAGGKHNDL 101 Query: 78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE----- 132 D+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +WDLLTK + L+ RLY+T ++ Sbjct: 102 DDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTKVYGLEPDRLYVTYFEGNKDAG 161 Query: 133 ---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189 D E LW G+ D I+ DNFW M + GPCGPCSE+ +D+ Sbjct: 162 IEPDLETKDLWLG-VGVKEDHILSGNMKDNFWEMGDQGPCGPCSEVHYDRI-GGRNAAHL 219 Query: 190 SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249 + + +EIWN VF+Q+ +++++ LP +DTG+G ER+ +VLQ+K++NYD D+F Sbjct: 220 VNMDDPNVLEIWNNVFIQYNRESEKILRPLPNKHVDTGLGYERLVSVLQDKSSNYDTDVF 279 Query: 250 KHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 L ++TG++ +RV+ DH+R+ +F I+DG P NEGRGYV Sbjct: 280 SPLFDVIREITGVRPYAGKFGEEDVDGIDTAYRVVADHVRTLTFAISDGAAPNNEGRGYV 339 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 T+MG +PE+ + + + E L E+ F K Sbjct: 340 W-----------------------------TQMGDMFPEIKKKQTDVMEILDEEEISFAK 370 Query: 361 TLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLDRG + + L+G ++LYDT G P+D+ Q + RGL+ + Sbjct: 371 TLDRGERQFEIYAQQAKESGSGKLHGADVWRLYDTFGFPVDLTQLMAEERGLSIDNTEFE 430 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 R +A+ S G ++ + ++ + +++D Sbjct: 431 EA-----RLKAKEASKGQAKAASDLLKLTVHDLG---------------KLEKDNVPKTD 470 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + S + +I E V +G+++ ++ D+T FYAE GGQ D G I Sbjct: 471 DSAKFGRGNIQSQILSIYHGKEFVASTNGISAGEQIGIILDKTNFYAEQGGQEYDIGKII 530 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQN--RRQLSINHSATHL 592 DG R FV +A + T+ L + R ++S NH+ TH+ Sbjct: 531 VDGHRGVTFQFGVPFLRPFVFYAKQARQLPQATDGKLQERLLLTRPQRHEVSNNHTGTHI 590 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L+ AL +LG+ + Q GS + + LRFD +H I+ ++L+ IE + I QN V ++ Sbjct: 591 LNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTEYIRQNCAVYSQ 650 Query: 653 -IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCGGTHVS 700 + + +G A+ G Y D VRVVSV S CGGTHV Sbjct: 651 DVPLAKAREITGVRAVFGETYPDPVRVVSVGVELDEILKDVKDPRWKGVSIEFCGGTHVQ 710 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---------------------GQD 739 TG+I L I+ ES I GIRRI A+TG+ A Q+ Sbjct: 711 KTGDIKDLVILEESGIAKGIRRIIAVTGKDAHEVQRIAREFGERLNKFEKMEQGPQKEQE 770 Query: 740 EKLKS-------LASFLKVSQGNVVGRV-EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791 KL +++ K + R+ +++ + + LQ K L + Sbjct: 771 AKLVQVDLNQLSISAVEKARFRDQFARIHKQVLDAQKALQKQEIKAALDTINSHFEKPEN 830 Query: 792 ADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLD- 848 D +F+ + + ++K + ++ ++ K++ + + + + + + V+ L Sbjct: 831 KDTSFLVVRLPTSANAKAISESINHVKSKLKDKSLYVFAADEQQGRVAHGCYVSSSLSAQ 890 Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +A + + + ++GG G + K D+A+ +L++ Sbjct: 891 GASASSWSGVVSAIVGG------------NGTDVGKVDEALDAATKYLEQ 928 >gi|46203377|ref|ZP_00051608.2| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 473 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 275/463 (59%), Positives = 338/463 (73%), Gaps = 2/463 (0%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWRLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY +D+EA LWKKI+G DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG P E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPTLETRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+PAL EMG A+PEL++++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPALVREMGQAFPELVRSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG G+D +F+ Sbjct: 361 KTLERGLAILDTESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTAAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 A++ Q+ ARA G G TE +WF +KE+ GAT+F+GY+ Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYET 462 >gi|219125523|ref|XP_002183027.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405302|gb|EEC45245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 959 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 292/920 (31%), Positives = 449/920 (48%), Gaps = 94/920 (10%) Query: 3 NVSSIRTTFLEFFQK--NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59 +R+TF++FF++ H SS+ P NDPTL+FTN+GM FK +F GQ P Sbjct: 9 TTDKVRSTFIDFFEQEPRSHTFQRSSACAPLNDPTLLFTNAGMNQFKPVFLGQVDPNSPL 68 Query: 60 ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 QKC+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AI AW LLT Sbjct: 69 ANVQRAVNSQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIDYAWQLLT 128 Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + LD RLY T + D+ EA LW + L A ++I DNFW M E G Sbjct: 129 EVYRLDPDRLYATYFQGDDALGLAPDFEARDLWLRY--LPAARVIGCDVRDNFWEMGEVG 186 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSEI +D+ + + + IEIWN+VF+Q+ ++ + LP IDTG Sbjct: 187 PCGPCSEIHYDRIGNRDAAA-FVNADDPQVIEIWNIVFIQYNREPDK-LQTLPAKHIDTG 244 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDH 278 MGLER+ ++LQ K +NYDID+F+ L T +R I DH Sbjct: 245 MGLERLVSILQNKDSNYDIDVFQPLFAKLATHTDRGPYTGRVGTDDVDLKDTAYRAIADH 304 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 R+ +F IADG +P NEGRGYVLRRI+RRA Y + L L+P + G Y Sbjct: 305 ARTLAFAIADGAVPNNEGRGYVLRRILRRATRYGQQILHCAPGFFATLIPVVVETFGETY 364 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395 PEL A+ I E ++ E++ FG LDRG+ + L ++++ ++G+ AF +YDT G Sbjct: 365 PELRAAESTILEIVQEEEQAFGDMLDRGIKFFTELEGELKENKVLEISGEKAFFMYDTLG 424 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL+ +D+ F A+E Q++R+R +G + E Sbjct: 425 FPVDLTELMAQEAGLS-VDMAGFANAMETQKTRSRQAQKTARAGNA-----PVLELVAE- 477 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVE 512 + + + ++ + + V A+ + + A G V Sbjct: 478 --------QTAWLVDQNVLPTDDGFKYKWDVQLPATVMALYGKDGFLTGDSTADQGDFVG 529 Query: 513 VVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +V D++ FYAEAGGQ D G R +TDVQ A + VE G + Sbjct: 530 IVLDKSSFYAEAGGQEADVGTLEFLDEAGTITGRFTVTDVQVYAGFLLHK-GAVEEGSIA 588 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 + ++ +DY+ RR ++ NHS TH+L+ AL +LG Q GS + LRFD H + Sbjct: 589 VDQAVNCKVDYERRRMIAPNHSMTHVLNAALRNVLGEKCDQRGSLCNNEKLRFDFAHKRA 648 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYED 685 +T E+K++E+ +A PV +++M+ DA A G A+ G Y D VRV+++ Sbjct: 649 MTMLEIKAVEEFCQKSVADAQPVKSKVMSLADAQAIDGVRAVFGEVYPDPVRVIAIGDS- 707 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S CGGTH+ +T E +V E+++ GIRR+ A+T A+ L G Sbjct: 708 ---SSVEFCGGTHLENTAEAEAFVLVEETAVAKGIRRVTAVTKDAAKRALAG-------- 756 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN----FMSHII 801 V +V ++E++ L + L+ +S A++ + Sbjct: 757 ----GVKFQALVDKIEQLPATTSGLYKQAGSARKDLDAAFVSAVLKAELRTRLEAIQKKA 812 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV----DLAR 857 ++ K L+ +D + ++ + + + +EK ++++ V D+ A + + Sbjct: 813 NDAAKKALQQRVDLVLNDVKKDVAVAL---EEKMQTLVLNV--DIAADSKASQRVMNTVK 867 Query: 858 LSAKVLG--------GGGGG 869 A + G GG Sbjct: 868 EIAPEMAFLGVSEAESGSGG 887 >gi|156089757|ref|XP_001612285.1| alanyl-tRNA synthetase family protein [Babesia bovis] gi|154799539|gb|EDO08717.1| alanyl-tRNA synthetase family protein [Babesia bovis] Length = 978 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 284/965 (29%), Positives = 449/965 (46%), Gaps = 105/965 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61 +R+ F+ F+K+GH SS ++P NDPTL+F N+GM FK+I TG+ + V Sbjct: 25 VRSEFIRHFEKHGHVFWKSSPVLPHNDPTLLFANAGMNQFKDIITGKADQSTEYGRLRRV 84 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK+ AI +AW+L+T+ + LD Sbjct: 85 CNSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDMAWELMTEVYKLD 144 Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T + DEEA LW + L A +I+ DNFW MA+TGPCGPC Sbjct: 145 KSRLYVTYFGGDPKLPNCGPDEEARDLWLR--HLPASRILPFGMKDNFWEMADTGPCGPC 202 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 SEI +D + + +E+WNLVFMQ+ +++ +LP+ +DTGMGLER Sbjct: 203 SEIHYDHI-GGRDAASLVNADDPMVVELWNLVFMQYNRKSDGSVELLPRPCVDTGMGLER 261 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNN---IVNHRVIVDHLRSSSFLIA 287 + VL+ +NYD DLF + ++ Y G++ V +RV+ DH R + IA Sbjct: 262 VCAVLKSSNSNYDGDLFTDIFAYVNKLMPHLPPYGGSDSMIDVAYRVVADHARCLTVAIA 321 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+N+GRGYVLRRI+RRA+ Y + LG + P M L+ + +G A+PE+ Sbjct: 322 DGVEPSNDGRGYVLRRILRRAVRYGKEHLGSSGPFMSKLVDCVVASLGVAFPEIQNNNDK 381 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG------KDEILNGDVAFKLYDTHGLPLDI 400 I T+ +E+ F +TLD+G +++ L KD +++G AF LY + G P D+ Sbjct: 382 IAATIHNEEVLFLETLDKGCDRFRKMVAKLQAGTENSKDLVVSGADAFLLYSSFGFPPDL 441 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + GL +DI FN+ + + + + + L A Sbjct: 442 TQLMAREMGL-DVDIDGFNEHFKRHQQLSEKKLCKSDDPVEQGM-ADLLSTLSADVLATI 499 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 G + + K D+ V A + + G +V D+TPF Sbjct: 500 SNSIGGRVTDDSLKYHGFAEAYDVDLEYDVEVLAQWSLSGLNKPLTEGDVFVLVLDRTPF 559 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+ D G + V K A +F E G + +DY+ R Sbjct: 560 YAESGGQIWDVGT----LGPFNVMKVLKMAGMVFHFCVYHE-GNAMPGARVKAKVDYKRR 614 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 +++ NH+ THLL+ L + Q GS + + L+FD+ +K + L+ IED + Sbjct: 615 VKVACNHTGTHLLNFVLREVYDEQSYQKGSQLDEEKLKFDIAANKQMPDETLQRIEDRMQ 674 Query: 641 DIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCG 695 +II N + R ++ +DA+ G A Y + VRVV++ + DG +S +CG Sbjct: 675 EIIDANWKIEVREIDFKDAVEIPGIRANFTDVYPEVVRVVAMTKDGQPIDGKAYSVEICG 734 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS-------HLMGQDEKLKSL--- 745 GTHV TG + IV E S+ G+RR+ T +++ + + L Sbjct: 735 GTHVPFTGVLKSAIIVGEESVSKGVRRLTLATNEKSEDSKAILASYWQQLETLESELYKF 794 Query: 746 ---------------------ASFLKVSQG---------NVVGRVEEIWEEYRKLQLIHA 775 A ++ ++ + + + + + +H Sbjct: 795 SDGMDTATMAQQANDNMKRLTALRFQMQSEKLLPLLGRRDLKNKFDTLINQQVEAGKVHQ 854 Query: 776 KRKLQLN-------VEDLSCHKIADVNFMSHIIS--EVDSKELKS-------VMDALQKK 819 KR + V + ++D+ +L+ L K Sbjct: 855 KRLGVIAKNMSTEYVNKFKAGDFGSAKVTLGTVDMIKMDANDLEGDVKSVNLFAQTLSKA 914 Query: 820 IQSGIIMLVGISKEKK-ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + I++ +++ S VV +A+ LA+ +A L G + +A+ Sbjct: 915 LPKMAILITSKNRDSTCVSCRCVVP--AGTGLDAIALAKEAAISL-----GYQQDIARGS 967 Query: 879 GPNGN 883 N + Sbjct: 968 ATNAS 972 >gi|327304957|ref|XP_003237170.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892] gi|326460168|gb|EGD85621.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892] Length = 934 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 282/962 (29%), Positives = 439/962 (45%), Gaps = 123/962 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F+KNGH G P + Sbjct: 23 VRDTFLDYFEKNGHTF-----------------------------GTVDPNSDFAQLKRA 53 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 54 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 113 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +W+ G+ D I+ DNFW M + GPCGPCS Sbjct: 114 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 172 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ Sbjct: 173 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 231 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L A + +TG + +RV+ DHLR+ +F Sbjct: 232 VSILQNKSSNYDTDVFTPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 291 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + Sbjct: 292 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIRR 351 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG + L+G ++LYDT G P+D+ Sbjct: 352 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 411 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D R +A+ S G ++ + ++ Sbjct: 412 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 455 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++++ + + +KAI E+++ + +++ ++ D+ Sbjct: 456 ----TLSTLEKNGVPKTDDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 511 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG + DG + G +H ++ G S++ D Sbjct: 512 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 571 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H I+ ++L+ IE Sbjct: 572 LRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 631 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 632 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 691 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 692 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGERL 751 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780 +D ++KSL L + V + + +I ++ Q K +++ Sbjct: 752 NRFEKMPASPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 811 Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ +S + + + + K + ++ ++ K+ + + K + Sbjct: 812 TAIDAISAYFEENTESPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADA-SKVA 870 Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 VT DL +A + A + ++ GG GG+ +A G NK D+A+ +L Sbjct: 871 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 929 Query: 897 KK 898 +K Sbjct: 930 EK 931 >gi|311257039|ref|XP_003126924.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa] Length = 769 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 263/749 (35%), Positives = 387/749 (51%), Gaps = 52/749 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ +++ +EIWNLVF+Q+ ++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F + +R A+ S G G+G + I + + G Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-RG 477 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + S + + V A+ + VEE +GQ+ VV D+T Sbjct: 478 LEATDDSPK----YNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQECGVVLDKTC 533 Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + + T + G +V H G L+ + L I Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKVGDQVRLFI 593 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652 Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683 E+ N++I PV + G A+ Y D VRVVS+ Sbjct: 653 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 G + S CGGTH+ ++ + Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVMEE 741 >gi|237842821|ref|XP_002370708.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49] gi|211968372|gb|EEB03568.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49] Length = 1037 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 283/944 (29%), Positives = 435/944 (46%), Gaps = 123/944 (13%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + ++R +LEFF+ GH + PSS +IP D TL+F N+GM FK IF GQ Sbjct: 25 SGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSK 84 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 V QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ Sbjct: 85 LRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEV 144 Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY + + DEEA +W + L A++++ +NFW MA+TGP Sbjct: 145 YKIPKDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGP 202 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278 GLER+A+VLQ+K +NYD DLF L +++ + + + +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+P + + +G + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454 PLD+ Q + GL +D F + + R+ + G+G + + Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-----GQ 509 ++ + + + + V AI E + G+ Sbjct: 501 SRKVPPTDDSAKYEWNVKDQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGE 560 Query: 510 K-VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 V V+ D+T FYAE GGQ+GD G + ++ D QK + +H + +G LR Sbjct: 561 NLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDF-ILHIGSMSKGTLR 619 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS----------------------- 603 LV +DY R +L+ +H+ THLL+ AL +L Sbjct: 620 EGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGIRI 679 Query: 604 --------------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 + Q GS + LRFD KP+ + ++ ++E+ V D IAQ PV Sbjct: 680 CESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPV 739 Query: 650 VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY-------------EDGGVHSSALCG 695 + + E A+ G A+ G Y D VRVVSV + S LCG Sbjct: 740 HYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCG 799 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHL 735 GTH+ + ++ I+SE S+ G+RR+ + A L Sbjct: 800 GTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPREL 859 Query: 736 MGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786 ++++ L V + ++V ++E+ + +LQ +K K + + Sbjct: 860 AALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEE 919 Query: 787 SCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV 828 + F+ + ++ D K L + L + +LV Sbjct: 920 LGTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLV 963 >gi|221485680|gb|EEE23961.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii GT1] Length = 1037 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 283/944 (29%), Positives = 435/944 (46%), Gaps = 123/944 (13%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + ++R +LEFF+ GH + PSS +IP D TL+F N+GM FK IF GQ Sbjct: 25 SGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSK 84 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 V QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ Sbjct: 85 LRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEV 144 Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY + + DEEA +W + L A++++ +NFW MA+TGP Sbjct: 145 YKIPKDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGP 202 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278 GLER+A+VLQ+K +NYD DLF L +++ + + + +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+P + + +G + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454 PLD+ Q + GL +D F + + R+ + G+G + + Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-----GQ 509 ++ + + + + V AI E + G+ Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGE 560 Query: 510 K-VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 V V+ D+T FYAE GGQ+GD G + ++ D QK + +H + +G LR Sbjct: 561 NLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDF-ILHIGSMSKGTLR 619 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS----------------------- 603 LV +DY R +L+ +H+ THLL+ AL +L Sbjct: 620 EGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGLRI 679 Query: 604 --------------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 + Q GS + LRFD KP+ + ++ ++E+ V D IAQ PV Sbjct: 680 CESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPV 739 Query: 650 VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY-------------EDGGVHSSALCG 695 + + E A+ G A+ G Y D VRVVSV + S LCG Sbjct: 740 HYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCG 799 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHL 735 GTH+ + ++ I+SE S+ G+RR+ + A L Sbjct: 800 GTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPREL 859 Query: 736 MGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786 ++++ L V + ++V ++E+ + +LQ +K K + + Sbjct: 860 AALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEE 919 Query: 787 SCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV 828 + F+ + ++ D K L + L + +LV Sbjct: 920 LGTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLV 963 >gi|221502948|gb|EEE28658.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii VEG] Length = 1037 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 283/945 (29%), Positives = 435/945 (46%), Gaps = 123/945 (13%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + ++R +LEFF+ GH + PSS +IP D TL+F N+GM FK IF GQ Sbjct: 25 SGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSK 84 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 V QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ Sbjct: 85 LRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEV 144 Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY + + DEEA +W + L A++++ +NFW MA+TGP Sbjct: 145 YKIPKDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGP 202 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278 GLER+A+VLQ+K +NYD DLF L +++ + + + +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+P + + +G + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454 PLD+ Q + GL +D F + + R+ + G+G + + Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFKRKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-----GQ 509 ++ + + + + V AI E + G+ Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGE 560 Query: 510 K-VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 V V+ D+T FYAE GGQ+GD G + ++ D QK + +H + +G LR Sbjct: 561 NLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDF-ILHIGSMSKGTLR 619 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS----------------------- 603 LV +DY R +L+ +H+ THLL+ AL +L Sbjct: 620 EGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGIRI 679 Query: 604 --------------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 + Q GS + LRFD KP+ + ++ ++E+ V D IAQ PV Sbjct: 680 CESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPV 739 Query: 650 VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY-------------EDGGVHSSALCG 695 + + E A+ G A+ G Y D VRVVSV + S LCG Sbjct: 740 HYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCG 799 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHL 735 GTH+ + ++ I+SE S+ G+RR+ + A L Sbjct: 800 GTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPREL 859 Query: 736 MGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786 ++++ L V + ++V ++E+ + +LQ +K K + + Sbjct: 860 AALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEE 919 Query: 787 SCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVG 829 + F+ + ++ D K L + L + +LV Sbjct: 920 LGTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLVT 964 >gi|126632676|emb|CAM56636.1| novel protein similar to vertebrate aminolevulinate delta-synthase 1 (ALAS1) [Danio rerio] Length = 917 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 291/945 (30%), Positives = 431/945 (45%), Gaps = 95/945 (10%) Query: 7 IRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 +R F++FF++ GH ++PSSS+ P DP+L+F N+GM FK I G P Y+ Sbjct: 2 VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKCVRAGGKHNDL +VG+ HHTFFEMLGN+SFG YFK A +AW LLT+E+ + Sbjct: 62 VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 121 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 +RLY++ + DEE +W GL AD ++ DNFW M ETGPCGPC Sbjct: 122 PAQRLYVSYFSGDPANGLPADEETRDIWLS-MGLRADHVLPFGMKDNFWEMGETGPCGPC 180 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +EI +D + + +EIWNLVFMQ+ +++ LP+ S+DTGMGLER Sbjct: 181 TEIHYDHIGN-RNAASLVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLER 239 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283 + TVLQ K +NYD DLF L+ A Q + + +RV+ DH+R+ Sbjct: 240 LVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTIC 299 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQ 342 IADG+ P G VLRRI+RRA+ ++ L E + L+P + +G AYPEL Sbjct: 300 VCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVANLLGDAYPELNT 359 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401 I + + + F +L +G ++D LS++ ++ VA+ LY G PLD++ Sbjct: 360 ESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDLI 419 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 +L +G + ++ G + SL E Sbjct: 420 DLMLEEKGKIVD-----KKEMKVLEDEYEKSEEDEGEKLDQLDLHSLAELQR-------- 466 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + + V A+ G +V E GQ V+ DQT FY Sbjct: 467 QRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQTSFY 526 Query: 522 AEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AE GGQ D G DG + + G +V H + LRT + L +D R Sbjct: 527 AEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVDEAWR 586 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 INH+ATH+L+ AL +LG VSQ GS + + LRFD + +T +EL+ +E+ V Sbjct: 587 LGCMINHTATHVLNFALRELLGPVVSQRGSHCSANRLRFDFSVKGSLTVSELQKVEELVL 646 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEYEDGGVHSSA 692 +II QN V + A + Y D VRVVS + E S Sbjct: 647 NIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQTSVE 706 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL---MGQDEKLKSLASFL 749 LC GTH+ TG I +VSE + G+ RI A TG A E+L+SL + + Sbjct: 707 LCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESLEARM 766 Query: 750 KVSQGNVVGRVEEIWEE---------------YRKLQLI-HAKRKLQLNVEDLSCHKIAD 793 +S + + + +E +++L+L K L+ + + +I + Sbjct: 767 GLSNTLSIHEAKRLSKEVGHQINAVDITPMPQWKRLELQTRLKAVLKSSNNSIRKLEIKE 826 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853 LK L K + +++ I + + T +A+ Sbjct: 827 A-------------ALK--AKELLDKHSNKPVVVDLIQTDS----ISGST-----GGSAI 862 Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + A L GG G A+ G N K + +A + + ++ Sbjct: 863 EWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILHWAEE 904 >gi|317497358|ref|ZP_07955681.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895427|gb|EFV17586.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 765 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 293/791 (37%), Positives = 436/791 (55%), Gaps = 44/791 (5%) Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RLY +VY++D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D Sbjct: 3 GLDPDRLYPSVYEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 61 Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +RY+E+WN VF QFE L +IDTGMGLER+A V Sbjct: 62 RGEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVV 121 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +QE + +D+D K + +V G+ Y + V+ RVI DH+RS++F+++DGI P+N Sbjct: 122 VQEVDSIFDVDSIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSN 181 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RLLG + + + E YPEL + I L E Sbjct: 182 EGRGYVLRRLIRRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQE 241 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +++F KT+D+GL +L + + + + L G AFKLYDT+G PLD+ +IL +G Sbjct: 242 EKQFNKTIDQGLSILADMEKAMNEKGSKELAGADAFKLYDTYGFPLDLTIEILEEKGFT- 300 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + ++ QR ARA + + + T+F+GYD L Sbjct: 301 VDKEGFEKEMQVQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL--------- 351 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ + E+V G K +V DQT FYA +GGQ D G Sbjct: 352 --------------TCEGEITAMTTETEVVSALNKGDKGTIVADQTAFYATSGGQEADKG 397 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 I ++ DV K + G F H V G V T++ +NR + NHSATHL Sbjct: 398 VIISGDASFEVEDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHL 457 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q GS + LRFD TH P++ E+ +E VN+ IAQ+LPVVT+ Sbjct: 458 LQKALREVLGTHVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTK 517 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A +GA AL G KY D VRVVS+ G S LCGGTHV +TG I I+S Sbjct: 518 VMSMEEAKKTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILS 572 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + +G+RRIEA+T Q ++ Q+E+LK A LK + ++ R+E + E ++L+ Sbjct: 573 ETGVASGVRRIEAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKS 632 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + L ++ V ++ I +VD L+ + D L++K+ G+I+L Sbjct: 633 ENESLKSKLAKDALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVL 692 Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 K+ K ++ +VT++ +A +L + A +GGGG GGRP+MAQ+GG N Sbjct: 693 AS-QKDGKVFLVAMVTDEAQKAGAHAGNLIKAIAGCVGGGG-GGRPNMAQAGGKNPAGIP 750 Query: 887 QAIAGVASFLK 897 +A+A V L+ Sbjct: 751 EAVAKVKEILE 761 >gi|66475244|ref|XP_627438.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum Iowa II] gi|46229265|gb|EAK90114.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum Iowa II] Length = 1003 Score = 602 bits (1552), Expect = e-169, Method: Composition-based stats. Identities = 301/1002 (30%), Positives = 468/1002 (46%), Gaps = 129/1002 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R F+++F+ H SS +IP NDPT++F N+GM FK+IF G +P Sbjct: 22 TGDEVRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSK 81 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 V QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE AI+ A+ LLT+ Sbjct: 82 LVRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQV 141 Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY T + DEEA ++W K L D+I+ + +NFW MA+TGP Sbjct: 142 YGIPKDRLYATYFGGDPKLPSCPPDEEAKRIWLKY--LPEDRILSCGSKENFWEMADTGP 199 Query: 169 CGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CGPCSEI +D+ GG +++ IEIWNLVFMQ+ ++ LPK +D Sbjct: 200 CGPCSEIHYDR----IGGRDAISLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVD 255 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASE---------------QVTGMKYEGNNIV 270 TGMGLER+ ++LQ KT+NYDIDLFK + +V + + Sbjct: 256 TGMGLERLVSILQNKTSNYDIDLFKPIFDQIHQVISSSGVQIPRYSGKVGDIDDPEMIDM 315 Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL----GYTEPLMMHLL 326 ++RVI DH+R+ + IADG +P+NEGRGYVLRRI+RRA+ Y EP L+ Sbjct: 316 SYRVISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLV 375 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------G 377 ++ MG+ Y E+ + +I+E + E+++F KTL +G + V++ L Sbjct: 376 DSVSNIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQ 435 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 ++ AF+LY T+G P+D+ + + +G D F +E + + Sbjct: 436 NKKLFPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMENHHLASEGKNNKSF 494 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 + I + +F L+ + + + K S + AI Sbjct: 495 ---DDLILKPDIQNNLLLEF----GLKETDDQYKYQSQTQIKDFY-------SNLIAIFD 540 Query: 498 QGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTG-----CAIGDGIRLQITDVQKKAE 551 +++ G+ + ++FD+T FY+E+GGQ+ DTG D + + KK Sbjct: 541 GNQLLNATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDEVSIFQVIDCKKFG 600 Query: 552 GIFVHHAIVERGILRTEMSLV--LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609 +H I+ +G + L +++DY R + NH+ TH+L+ AL ILGS Q G Sbjct: 601 NYVLHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRG 660 Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALL 668 S + P+ LRFD + KP+T +++ IE +N II + + A+ Sbjct: 661 SVVDPNKLRFDFSSQKPLTLDQIEEIEKMINQIIQEKQTVYCQTVELSIAKQIPNIRAIF 720 Query: 669 GTKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 G Y D VRV+SV + D S CGGTHV +T EI+ I+SE I Sbjct: 721 GETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGI 780 Query: 717 RAGIRRIEAITGQR---ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL- 772 GIRRI A+T + A + ++ K L ++ + +E + L L Sbjct: 781 AKGIRRIVAVTDNQSEIAIENAKRLKQEFKKLEELNGKELETLLNSFKSKLDETKLLPLL 840 Query: 773 -------------------IHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIIS 802 K+K +LN+ KI + + I Sbjct: 841 YRRQLSQIIEENYKRVIADAKKKQKERLNMAKELATKIGQEYSQQLSSNNEFPALILNIK 900 Query: 803 EV--DSKELKSVMDALQKKIQSGIIMLV--GISKEKKASVLIVVTEDLLDRFNAVDLARL 858 ++ DSK + + + KK IML G + SV+ ++ + D+ ++ + + Sbjct: 901 QIQGDSKSMDVIGQDISKKYPEAPIMLFTSGEFNDNGVSVISIMPKSKSDKLSSSNWLKS 960 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNG--NKADQAIAGVASFLKK 898 + ++ G GG + G + I LKK Sbjct: 961 TIELCNGKCGG--TDLRSVGSSKTGSESIESMIQLALDLLKK 1000 >gi|260784931|ref|XP_002587517.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae] gi|229272665|gb|EEN43528.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae] Length = 751 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 254/758 (33%), Positives = 388/758 (51%), Gaps = 55/758 (7%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +R F+++F+ K+ H + SSS IP +DPTL+F N+GM FK IF G P Sbjct: 7 TGDQVRDMFIKYFEEKHEHLEVHSSSTIPLDDPTLLFANAGMNQFKPIFQGTVDPSHPMA 66 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ A AWDLL Sbjct: 67 KYRRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEACSWAWDLLVN 126 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + L+ R+Y+T + D E ++W + G++ D+I+ + DNFW M E GP Sbjct: 127 GYKLEVERMYVTYFGGNEAQGLQPDLECRQIWLDL-GVAEDRILPGSMKDNFWEMGEVGP 185 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWNLVFMQ ++ LPK +ID GM Sbjct: 186 CGPCSEIHYDRV-GGRDASHLVNMDVPEVLEIWNLVFMQNNREPDGSITNLPKKNIDCGM 244 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279 GLER+ +V+Q +NYD DLF A ++ TG++ + +RV+ DH Sbjct: 245 GLERILSVVQGVLSNYDTDLFTPFFDAIQKATGVRPYTGKVGADDADGIDMAYRVLADHA 304 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RR + YA L L+ +GSA+P Sbjct: 305 RTLTISMSDGGKPDNVGRGYVLRRILRRGVRYATEKLNAPRGFFASLVDVAVQTLGSAFP 364 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 E+ + ++++ + E+E+F KTL RG +L+ ++ LG +++ G+ A+ LYDT+G P+ Sbjct: 365 EITKDPQMVKDIINEEEEQFLKTLSRGRRVLEKRITQLGDSKVVPGETAWLLYDTYGFPV 424 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + +GL +D ++ + + +A+ S G G+G + + + + Sbjct: 425 DLTSLMAEEKGLT-LDCAAYEE----CKKQAQIRSQGKGAGVDDSVNLDVHAINELQE-- 477 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + + ++ V ++ + + V+E GQ+ V+ D+T Sbjct: 478 ---KGSPPTDDSPKYQYSHDDNGNYVFQPCTATVVSLRRDKQFVQEVTQGQECGVLLDRT 534 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL------QITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 FYAE GGQ+ D G + + + + T + G +V H G L + Sbjct: 535 NFYAEQGGQIYDEGYLVKEEDEVKRTAETEFTVKNCQVRGGYVMHIGTLVGTLNVGDKVK 594 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L +D RR + NH++TH+L+ AL +LG Q GS + PD LRFD + +T+A++ Sbjct: 595 LFVDEARRRPIMSNHTSTHVLNFALRQVLG-EADQRGSLVAPDRLRFDFSAKGAMTTAQI 653 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE--------- 682 K E N+II +N V + A G A+ Y D VRV+S+ Sbjct: 654 KEAEKICNEIIKKNEQVYAKEAALAQAKAIQGLRAVFDETYPDPVRVLSIGISVEDMLSD 713 Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 G V S CGGTH+ G L IV+E +I Sbjct: 714 PTSPAGTVTSVEFCGGTHLQRVGHAGDLVIVTEEAIAK 751 >gi|209877330|ref|XP_002140107.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66] gi|209555713|gb|EEA05758.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66] Length = 984 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 290/963 (30%), Positives = 445/963 (46%), Gaps = 117/963 (12%) Query: 3 NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58 ++R F++FF H+ S+S+IP NDPTL+FTN+GM FK+IFT +P Sbjct: 12 TGKNVRQQFIDFFVNKANHKFYRSASVIPLNDPTLLFTNAGMNQFKSIFTETVEPNSELS 71 Query: 59 --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 V QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE AI+ A++LLTK Sbjct: 72 KLVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIKWAFELLTK 131 Query: 117 EFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 +++ RLY+T + D+ EA +W L ++II + +NFW MA+ G Sbjct: 132 VYEIPSERLYVTYFGGDDKLPACPVDEEARDIWMNY--LPKERIISCSAKENFWEMADVG 189 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPCSEI FD+ +++ IEIWNLVFMQ+ ++ +LP +DTG Sbjct: 190 PCGPCSEIHFDRI-GGRDASHLVNKDDPSVIEIWNLVFMQYYRETDGSLVLLPAKCVDTG 248 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-----------MKYEGNNIVNHRVIV 276 MGLER+ +VLQ K +NYD DLF + + +++RVI Sbjct: 249 MGLERLVSVLQNKLSNYDTDLFIPIFNQIHSIFPNIPQYKGMVGDKDDPNKIDMSYRVIA 308 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLM-MHLLPALCTE 332 DH+R+ S I+DG +P+NEGRGYVLRRI+RRA+ Y R G + L+ ++ Sbjct: 309 DHIRTLSVAISDGCIPSNEGRGYVLRRILRRAVRYGRQYFNAGMDGNMWFYKLVDSVSNI 368 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL------------GKDE 380 +G YPE+++ K I+ + E+++F KTL +G+ + V + L Sbjct: 369 LGDYYPEIVEKKDTIKSAIFEEEKQFSKTLGKGIERFNRVTNKLLKSSSPINSKLKNIRL 428 Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 I + AF+LY T+G P+D+ + I G+ D F + +E + + Sbjct: 429 IFPANEAFQLYSTYGFPMDLTELIASELGME-FDHEGFKKCMENHQLASEGKFNKKLDKL 487 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 K ++ +K + +L N + AI E Sbjct: 488 VLKP-----------------DIQQHILLKYGLNLTDDIYKYNLNNECFGKLFAIYNGHE 530 Query: 501 IVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVH 556 +++ A V ++FD+T +Y+E+GGQ+ D G + Q+ D QK + Sbjct: 531 LIDTATCFHGIVGLIFDKTCYYSESGGQVSDIGYIELWEDNLNNFQVIDCQKFGNYVLHI 590 Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616 ++E + + ID R NH+ATHLL++AL +LG Q GS + P Sbjct: 591 GVVLEGKFSVGDSNCHFLIDKDRRVMTMRNHTATHLLNYALRLLLGEKCDQRGSIVEPTK 650 Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDR 675 LRFD + +K + E++ IED +N II V ++ SG A+ G Y D Sbjct: 651 LRFDFSANKALNINEIQQIEDIINKIIKDKQEVFCDVVPLNIAKEISGLRAIFGEAYPDP 710 Query: 676 VRVVSVEYEDGGVHS--------------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 VRV+SV ++ LCGGTHV +T +I I+SE I GIR Sbjct: 711 VRVLSVGIPVNELNDCNFGASKSLHIKTSVELCGGTHVLNTYDIGSFIILSEEGIAKGIR 770 Query: 722 RIEAITGQRARSH------LMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWE---- 765 RI A+T A L + E+LK++ K R+ + + Sbjct: 771 RIVAVTNDTANVAEDNTLILTSKFEQLKNIFGKELGKEITKCRVLLDETRILPLIKRKYL 830 Query: 766 ---------------EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE-- 808 + ++ + A +K+ ++ + N + I EVD Sbjct: 831 SQFLDNQYQRVLDDAKLKQKERQSAAQKVAQDILSQLSKDLNIGNILVRNIQEVDGDIKC 890 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 ++ + + K+ ML+ K S L +V + A + ++ GG Sbjct: 891 IEIISQYIIKEFPKVSFMLLTSGSCNKNGISALAIVPQGEGKLLKANQWLHSTLEICGGK 950 Query: 867 GGG 869 GG Sbjct: 951 CGG 953 >gi|67594831|ref|XP_665905.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis TU502] gi|54656773|gb|EAL35675.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis] Length = 989 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 294/999 (29%), Positives = 459/999 (45%), Gaps = 125/999 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +R F+++F+ H SS +IP NDPT++F N+GM FK+IF G +P Sbjct: 10 TGDEVRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSK 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 V QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE AI+ A+ LLT+ Sbjct: 70 LVRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQV 129 Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY T + DEEA K+W K L D+I+ + +NFW MA+TGP Sbjct: 130 YGIPKDRLYATYFGGDPKLPSCPPDEEAKKIWLKY--LPEDRILSCGSKENFWEMADTGP 187 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ +++ IEIWNLVFMQ+ ++ LPK +DTGM Sbjct: 188 CGPCSEIHYDRIGGRDASS-LVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDTGM 246 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQAS---------------EQVTGMKYEGNNIVNHR 273 GLER+ ++LQ KT+NYDIDLFK + +V + +++R Sbjct: 247 GLERLVSILQNKTSNYDIDLFKPIFDQIYQVISSSGVQIPRYSGKVGDIDDPEMIDMSYR 306 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL----GYTEPLMMHLLPAL 329 VI DH+R+ + IADG +P+NEGRGYVLRRI+RRA+ Y EP L+ ++ Sbjct: 307 VISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVDSV 366 Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------GKDE 380 MG+ Y E+ + +I+E + E+++F KTL +G + V++ L + Sbjct: 367 SNIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQNKK 426 Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 + AF+LY T+G P+D+ + + +G D F +E + + Sbjct: 427 LFPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMENHHLASEGKNNKSF--- 482 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 + I + +F ++ Q S + AI + Sbjct: 483 DDLILKPDIQNNLIVEF-------------GLKETDDQYKYQTQIKDFYSNLIAIFDGNQ 529 Query: 501 IVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTG-----CAIGDGIRLQITDVQKKAEGIF 554 +++ G+ + ++FD+T FY+E+GGQ+ DTG D KK Sbjct: 530 LIDATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDETSKFQVIDCKKFGNYV 589 Query: 555 VHHAIVERGILRTEMSLV--LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 +H I+ +G + L +++DY R + NH+ TH+L+ AL ILGS Q GS + Sbjct: 590 LHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRGSVV 649 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTK 671 P+ LRFD + KP+T +++ IE V+ II + + A+ G Sbjct: 650 DPNRLRFDFSSQKPLTLDQIEEIEKMVSQIIQEKQTVYCQTVELSIAKQIPNIRAIFGET 709 Query: 672 YNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 Y D VRV+SV + D S CGGTHV +T EI+ I+SE I G Sbjct: 710 YPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGIAKG 769 Query: 720 IRRIEAITGQR---ARSHLMGQDEKLKSLASF-----------LKVSQGN---------- 755 IRRI A+T + A + ++ K L K Sbjct: 770 IRRIVAVTDNQSEIAIENAKRLKQEFKKLEELNGKELETLLNSFKSKLDETKLLPLLYRR 829 Query: 756 -----VVGRVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEV---- 804 + + + + +K Q ++L + +++ N +I + Sbjct: 830 QLSQIIEEHYKRVIADAKKKQKERLNMAKELATKIGQEYSQQLSSNNEFPALILNIKQIQ 889 Query: 805 -DSKELKSVMDALQKKIQSGIIMLV--GISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 DSK + + + KK IML G + SV+ ++ + D+ ++ + + + + Sbjct: 890 GDSKSMDVIGQDISKKYPEAPIMLFTSGEFNDNGVSVISIMPKSKSDKLSSSNWLKSTIE 949 Query: 862 VLGGGGGGGRPHMAQSGGPNG--NKADQAIAGVASFLKK 898 + G GG + G + I LK+ Sbjct: 950 LCNGKCGG--TDLRSVGSSKTGSESIESMIQLALDLLKQ 986 >gi|303282971|ref|XP_003060777.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545] gi|226458248|gb|EEH55546.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545] Length = 972 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 271/927 (29%), Positives = 445/927 (48%), Gaps = 83/927 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 + IR TFL+FF+ H ++PSS ++P +DPTL+F N+GM FK+IF G+ P Sbjct: 13 ANKIRQTFLDFFESKEHAVVPSSPVVPHDDPTLLFANAGMNQFKSIFLGKADPKGPLAKL 72 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 T QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG +FK AI AW+LLT + Sbjct: 73 KRATDTQKCIRAGGKHNDLDDVGKDTYHHTYFEMLGNWSFGDFFKREAIHWAWELLTSKE 132 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + LD+ RLY + + DE EA +W ++ L +K++ DNFW M + GP Sbjct: 133 HYGLDESRLYASYFGGDESQGLPPDLEARDIWLEV--LPPNKVLPFGCEDNFWEMGDVGP 190 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWN+VF+QF ++ LP +DTGM Sbjct: 191 CGPCSEIHYDRI-GGRDAADLVNADDPNCLEIWNIVFIQFNREEGGVLKPLPAKHVDTGM 249 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279 G ER+A++LQ+K +NYD D+F + + + + G + EG + +RV+ DH+ Sbjct: 250 GFERIASILQDKMSNYDTDVFTPIFERIREVTGAPPYTGLLGAEDEGEKDMAYRVVADHI 309 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338 R+ +F IADG P ++GR YVLRR++RRA+ + R LG + L+ + G +P Sbjct: 310 RTLTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAEQGFFQKLVAVVVELFGHVFP 369 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396 E+++ + + + + E+E FG+TL +G+ + + +D +++G AF L+++ G Sbjct: 370 EIVKHEKRVTDIIADEEESFGRTLLKGIDQFKKIAAKAKEDGGAVVDGAAAFLLWESFGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT--TEKIWFSLKEKYGA 454 P+D+ + + G+ +D F+ A +E + ++RA + E S +K G+ Sbjct: 430 PIDLTEIMAEENGMT-VDTAGFDAAFKEAQEKSRAGGKKSDGPSLLFEAEATSWLQKNGS 488 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN-GVSSIVKAIVQQGEIVEEAVSGQK-VE 512 + + + P D S++VKAI+ VE + + Sbjct: 489 ----KWGKAKDIAHAHDAIPFTDDSPKYDGPEADPSAVVKAILTLNGFVESTEGVEGPIG 544 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSL 571 +V D+T FYAE+GGQ+ D G + + K A G +H G + + Sbjct: 545 LVLDRTSFYAESGGQVCDVGVITTENGASLAVNEVKVAAGFVLHSGERVEGEAITVGNTC 604 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 +DY R ++ NH+ TH+L+ AL ++LG V Q GS + + LRFD +H+KP+++ E Sbjct: 605 AARVDYDRRANIAPNHTMTHVLNFALRSVLGDGVDQKGSLVDDEKLRFDFSHNKPMSNNE 664 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------ 684 +K +E+ V + + +L V R + DA SG A+ G Y D VRVVSV Sbjct: 665 IKRVEEIVRERVGASLAVDAREVALADAKTISGLRAVFGEVYPDPVRVVSVGPTIDELLA 724 Query: 685 -----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + +S CGGTH+++T + ++ E+ I GIRR+ A T A + L Sbjct: 725 NPGSEEWTKYSIEFCGGTHLANTSQAEGFVLLEEAGIAKGIRRVVAATRGGAVAALATAA 784 Query: 740 EKLKSLASFLKVSQG-NVVGRVEEIWEEYR-----KLQLIHAKRKLQLNVEDL------- 786 + + + G + + + + +Q + ++ + L Sbjct: 785 GIAARVDACDAMPPGPELDKEMAALKNDVDTAVMPAVQRAEIRDRMAATTKKLIAAAKEA 844 Query: 787 -----------------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + F+ + D LK A+ K + Sbjct: 845 AVAVKAAAKKAVEEKTAEVKAAGETVFVMRLGDGADPGALKDAA-AVAFKQDVACALFSA 903 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLA 856 + + KA + + Sbjct: 904 DTVKGKAMCYVSAPPSATPAIDVKKWL 930 >gi|213648094|ref|ZP_03378147.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 465 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 242/473 (51%), Positives = 321/473 (67%), Gaps = 20/473 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 3 KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT F Sbjct: 63 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+L Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +D F A+EEQR RAR + ++ A++F GYD L Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE 465 >gi|171687707|ref|XP_001908794.1| hypothetical protein [Podospora anserina S mat+] gi|170943815|emb|CAP69467.1| unnamed protein product [Podospora anserina S mat+] Length = 911 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 292/927 (31%), Positives = 435/927 (46%), Gaps = 94/927 (10%) Query: 43 MVPFKNIFTGQE---KPVY--QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97 M FK +F G +P+ + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+S Sbjct: 1 MAQFKPLFLGTVGKTEPMAALKRAADTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWS 60 Query: 98 FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSAD 149 FG YFK+ AI W+LLTK + LD RLY+T ++ D EA +LW G+ D Sbjct: 61 FGDYFKKEAIGWTWELLTKVYGLDPNRLYVTYFEGNEAMGLEPDLEAKQLWLDQ-GVPED 119 Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209 I+ DNFW M + GPCGPCSE+ +D+ +++ +EIWN VFMQ++ Sbjct: 120 HILPGNMKDNFWEMGDQGPCGPCSEVHYDKV-GGRNAAHLVNQDDPLVVEIWNNVFMQYD 178 Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------T 260 +Q + LP IDTG+G ER+ + LQ K++NYD D+F L +V Sbjct: 179 RQKDRSLKPLPAKHIDTGLGFERLVSALQHKSSNYDTDVFAPLFAKIVEVSGSRPYSDKY 238 Query: 261 GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YT 318 G RV+ DH+R SF IADG +P N GRGYV+RR++RR + YAR Sbjct: 239 GKDDVDGVDTALRVVADHIRLLSFSIADGAVPGNIGRGYVVRRVLRRGVRYARKYLNANI 298 Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378 +LPAL +MG +PEL + + I+E L E+ F TLDRG + + + K Sbjct: 299 GSFFSQILPALVEQMGEQFPELKKKEADIKEILDEEEVAFAVTLDRGEAMFEKYAAAATK 358 Query: 379 --DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436 ++ L+G ++LYDT G P+D+ + + RGL + ++ + +AR S + Sbjct: 359 AGEKKLSGADVWRLYDTFGFPVDLTKLMAEERGLTID-----EEEVKVAQEKAREASKAV 413 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 T F + S+ + ++ I Sbjct: 414 KEAV--------------TTFPKLTVHHISELENDRNIPRTDSEAKYSAQSSEGKIQLIF 459 Query: 497 QQGEIVEEAVS---GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553 E +E + + ++ D+T FYAE+GGQ+ DTG I D ++ G Sbjct: 460 NGSEFIENSKDVPPKTPLGIILDKTNFYAESGGQVADTGRIIIDDEAEFKVLDTQEFGGY 519 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 VH +E G L+ + D R+ + NH+ TH+L+HAL +LG V+Q GS + Sbjct: 520 VVHSGFLEYGNLKAGDVVKCEFDELRRQPIRNNHTGTHVLNHALREVLGDTVNQAGSLVD 579 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY 672 D LRFD +H +T E+K IE+ N I +NL V + + +A +G A+ G Y Sbjct: 580 QDKLRFDFSHKTQVTLPEIKRIEELSNADIRKNLKVYAKDVALSEAREINGLRAVFGETY 639 Query: 673 NDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 D VRVVSV + S CGGTHV +TG I L IV ES I GIR Sbjct: 640 PDPVRVVSVGASVEEMLKDPKNPEWRQFSVEFCGGTHVDATGLIKDLIIVEESGIAKGIR 699 Query: 722 RIEAITG---QRARSHLMGQDEKLKSLA---------SFLKVSQGNVVGRV--------- 760 RI A TG +A+ ++L +A S +K + ++ V Sbjct: 700 RIVAYTGAGAHQAQQDAKDFSDRLDHIAALEFGPEKVSLVKAASVDLDALVISVLTKEEL 759 Query: 761 --------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKS 811 + + +E +K Q + L + + K D F+ H+ ++K + Sbjct: 760 RKKFATIQKSVLDEQKKRQKAESGTALSTVQKFFADEKNKDAKAFVGHLPISANAKAISE 819 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 VM + K ++ + L SK++ + V DL A +++GG GG Sbjct: 820 VMTYYKSKDKAKSVYLFAGSKDEAVVHGVYVGTDL-KGVTAEQWTAAVTEIIGGKTGGKE 878 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P Q G N K D+A+ +L++ Sbjct: 879 PSR-QGAGSNPEKLDEAVTKAQQWLEE 904 >gi|297678244|ref|XP_002816983.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial-like [Pongo abelii] Length = 985 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 279/956 (29%), Positives = 430/956 (44%), Gaps = 92/956 (9%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VG+ HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+++ +D D E +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWVSYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q + EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ L + L+P + +G AYPEL + Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSVEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +L +G+ A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVKKQG----LWLDVH-ALGELQRQG---- 506 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522 Q + V + + G V GQ+ ++ D+T FYA Sbjct: 507 VPPTDDSPKYNYSLQPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566 Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ D G + + + G F+ H V L+ + L +D R Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKAWRL 626 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 H+ATHLL+ AL LG Q GS ++P+ LR DVT P+T +L+++E+ V + Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLSPEQLRLDVTTQTPLTPEQLRAVENTVQE 686 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691 + Q+ V + L Y D VRV + + S Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748 LC GTH+ TG + L I+ + + G R+ AITG+ +AR +++K+ Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQEVKAATER 806 Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783 L +V + E+ + LQ A RKLQ+ Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866 Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++ + + +S L V+ L ++ S ++L+ K Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPVGKVLCA 926 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + F A A +GG G R +AQ G + + A++ ++ Sbjct: 927 CQVAQGATPTFTAEAWALAVCSHIGGKAWGSR-VVAQGTGSTTD-LEAALSIARTY 980 >gi|258538952|ref|YP_003173451.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] gi|257150628|emb|CAR89600.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] Length = 710 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 265/731 (36%), Positives = 398/731 (54%), Gaps = 52/731 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P + Sbjct: 4 MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T QK +R ND++ VG+T RH TFFEMLGNFS G YFK+ I AW+LLT K FD Sbjct: 64 TNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +RLY+TVY +D+ +LW+K G++ D I+ DNFW + E GP GP SEIF+D+ Sbjct: 120 FDPKRLYVTVYPKDKGTKELWRK-VGVADDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175 Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ E RY+EIWN+VF + P +IDTGMGLER+ Sbjct: 176 GQSFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q ++ DLF +I+A+E+++ K + V+ ++I DH R+ +F I DG L Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFAIGDGAL 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVI 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE+ RF +TLD G+ LL+ +++ L ++ ++G AFKL+DT+G P+++ + G Sbjct: 356 ESEEARFRQTLDAGVNLLNQIVAELKQNGKKEISGADAFKLFDTYGFPVEMTNEYAEDEG 415 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + + QR RAR S ++ L + ++F G+ L Sbjct: 416 LK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH-- 470 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++AIV ++ +E +GQ +++FD+TPFYAE GGQ+ Sbjct: 471 --------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQVA 509 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + + A H + +G L L++D R+++S+NH+ Sbjct: 510 DHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKGKLTKGQPYWLSVDRLRRKKVSLNHT 569 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I LP Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALP 629 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M +A GA A+ G KY D VR+VS+ G ++ GGTH ++T + L Sbjct: 630 ITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNALGLF 684 Query: 709 YIVSESSIRAG 719 I SES + G Sbjct: 685 KITSESVLAQG 695 >gi|74742244|sp|Q5JTZ9|SYAM_HUMAN RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|57209007|emb|CAI40747.1| alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens] gi|119624673|gb|EAX04268.1| alanyl-tRNA synthetase like [Homo sapiens] Length = 985 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 281/956 (29%), Positives = 431/956 (45%), Gaps = 92/956 (9%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D E +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q + EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DGI P G VLRRI+RRA+ ++ L + L+P + +G AYPEL + Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +L +G+ A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 506 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + V + + G V GQ+ ++ D+T FYA Sbjct: 507 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566 Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ D G + + + G F+ H V LR + L +D R Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E+ V + Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691 + Q+ V + L Y D VRV + + S Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748 LC GTH+ TG + L I+ + + G R+ A+TG+ +AR +++K+ Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 806 Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783 L + +V + E+ + LQ A RKLQ+ Sbjct: 807 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866 Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++ + + +S L V+ L ++ S ++L+ K Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + + F A A +GG G R +AQ G + + A++ ++ Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980 >gi|38569417|ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens] gi|124297995|gb|AAI31729.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens] gi|208967617|dbj|BAG72454.1| alanyl-tRNA synthetase 2, mitochondrial [synthetic construct] Length = 985 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 280/956 (29%), Positives = 431/956 (45%), Gaps = 92/956 (9%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D E +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q + EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ L + L+P + +G AYPEL + Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +L +G+ A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 506 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + V + + G V GQ+ ++ D+T FYA Sbjct: 507 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566 Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ D G + + + G F+ H V LR + L +D R Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E+ V + Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691 + Q+ V + L Y D VRV + + S Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748 LC GTH+ TG + L I+ + + G R+ A+TG+ +AR +++K+ Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 806 Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783 L + +V + E+ + LQ A RKLQ+ Sbjct: 807 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866 Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++ + + +S L V+ L ++ S ++L+ K Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + + F A A +GG G R +AQ G + + A++ ++ Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980 >gi|6331226|dbj|BAA86584.1| KIAA1270 protein [Homo sapiens] Length = 986 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 280/956 (29%), Positives = 431/956 (45%), Gaps = 92/956 (9%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 47 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 106 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 107 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 166 Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D E +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 167 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 225 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 226 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 276 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q + EG +RV+ DH+R+ S I Sbjct: 277 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 336 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ L + L+P + +G AYPEL + Sbjct: 337 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 396 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 397 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 456 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +L +G+ A EE + RAR G +W + G Q G Sbjct: 457 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 507 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + V + + G V GQ+ ++ D+T FYA Sbjct: 508 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 567 Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ D G + + + G F+ H V LR + L +D R Sbjct: 568 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 627 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E+ V + Sbjct: 628 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 687 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691 + Q+ V + L Y D VRV + + S Sbjct: 688 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 747 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748 LC GTH+ TG + L I+ + + G R+ A+TG+ +AR +++K+ Sbjct: 748 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 807 Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783 L + +V + E+ + LQ A RKLQ+ Sbjct: 808 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 867 Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++ + + +S L V+ L ++ S ++L+ K Sbjct: 868 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 927 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + + F A A +GG G R +AQ G + + A++ ++ Sbjct: 928 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 981 >gi|114607605|ref|XP_518510.2| PREDICTED: alanyl-tRNA synthetase like [Pan troglodytes] Length = 985 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 282/956 (29%), Positives = 430/956 (44%), Gaps = 92/956 (9%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D E +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q + EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DGI P G VLRRI+RRA+ ++ L + L+P + +G AYPEL + Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +L +G+ A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 506 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + V + + G V GQ+ ++ D+T FYA Sbjct: 507 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566 Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ D G + + + G F+ H V LR + L +D R Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E+ V + Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691 + Q+ V + L Y D VRV + + S Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748 LC GTH+ TG + L I+ + + G R+ AITG+ +AR +++K+ Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQEVKAATER 806 Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783 L +V + E+ + LQ A RKLQ+ Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866 Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++ + + +S L V+ L ++ S ++L+ K Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + + F A A +GG G R +AQ G + + A++ ++ Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980 >gi|71895377|ref|NP_001026227.1| probable alanyl-tRNA synthetase, mitochondrial [Gallus gallus] gi|53136426|emb|CAG32542.1| hypothetical protein RCJMB04_28n18 [Gallus gallus] Length = 816 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 255/764 (33%), Positives = 376/764 (49%), Gaps = 42/764 (5%) Query: 6 SIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----Q 59 IR FL FF+ K+GH LPS+ + P DPTL+F NSGM FK +F G P + Sbjct: 33 QIRAAFLRFFEEKHGHRCLPSAPVRPRGDPTLLFVNSGMNQFKPVFLGTAHPRSELAQQR 92 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A +AW+LLT+ + Sbjct: 93 RVVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTEVYK 152 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + + RLY+T + DEE +W + G+ A+ ++ DNFW M +TGPCGP Sbjct: 153 IPKDRLYVTYFGGDSSLGLNADEECRDVWLSL-GVPANHVLPFPMKDNFWEMGDTGPCGP 211 Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 C+EI +D ++ +EIWNLVFMQ+ ++ LP+ +DTGMGLE Sbjct: 212 CTEIHYDHVGGGRNASALVNQGSPDVVEIWNLVFMQYSREVDGNLLPLPQHHVDTGMGLE 271 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSS 282 R+ TVLQ K +NYD DLF ++ A + + G G+ + +RV+ DH+R+ Sbjct: 272 RLVTVLQNKRSNYDTDLFTPILDAIHKGCGGPRYQGLVGNADVGHVDMAYRVVADHVRTL 331 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341 I DGI P G VLRRI+RRA+ + L L+ L+PA+ +G AYPEL Sbjct: 332 CVCITDGIYPGLSGAELVLRRILRRAVRFCAEVLHAPRGLLASLVPAVVEVLGDAYPELK 391 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + + + F +L+RG +++ + + +VA+ LY G PLD++ Sbjct: 392 KNADQVMDIFNENEVAFLSSLERGRRIIERTVQQMKPSADFPAEVAWSLYGNLGFPLDLI 451 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 +L +G +D +FN+ + E R + + + D Sbjct: 452 DLMLEEKG-IRLDSAAFNELVLEDAKRKAHGPQEGRQLEGTVVHLDVHSMAQLQR----D 506 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + + + + + + + + + + +E +GQ V+ D+T FY Sbjct: 507 NIPATDDSPKY-SYKLGQHGQYEFSPCQATILMLYRDQSLQKEVGAGQHCGVILDRTNFY 565 Query: 522 AEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AE GGQ D G I + + G +V H + LR + L +D R Sbjct: 566 AEQGGQASDRGYLIRLGQQDILFPVESVRLCGGYVIHEVTAVETLRAGDQVQLFVDEVQR 625 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 NH+ATHLL+ AL +LG Q GS +T + LRFD P+T +L+ +E V Sbjct: 626 LACMTNHTATHLLNFALRHVLGDSTEQRGSHVTAEQLRFDFNIKGPVTVEQLQQVEQVVQ 685 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHS 690 D+I +N V + A L Y D VR+VS+ + S Sbjct: 686 DVIKRNEAVYMAEVPLALARRVQGLRALDEGYPDPVRIVSLGVPVETVLTSNSQAAMQTS 745 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 LC GTH+ TG + L IVSE + GI R+ A+TG++A+ Sbjct: 746 VELCCGTHLLQTGAMEDLAIVSERQLVKGISRVIAVTGRQAKQA 789 >gi|109071333|ref|XP_001099647.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Macaca mulatta] Length = 985 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 277/956 (28%), Positives = 429/956 (44%), Gaps = 92/956 (9%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + Sbjct: 106 QKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPTE 165 Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+++ + + D E +W + G+ A +++ +NFW M TGPCGPC+EI Sbjct: 166 RLWVSYFDGDPKAGLEPDLETRDIWLSL-GVPATRVLSFGPQENFWEMGNTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQWHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q + EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLHAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ L + L+P + +G AYPEL + Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QISNLVLEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLSGDLGLPLDMVEL 455 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +L +G+ A E + +AR G +W + G Q G Sbjct: 456 MLEEKGVQLDSTGLERLAQEAAQHQARQAEPVQKQG----LWLDVH-ALGELQHQG---- 506 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + V + + G V GQ+ ++ D+T FYA Sbjct: 507 VPPTDSSPKYNYSLRPNGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566 Query: 523 EAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQ D G + G + + + G F+ H V L+ + L +D R Sbjct: 567 EQGGQASDRGYLVRVGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKAWRL 626 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 H+ATHLL+ AL LG Q GS + P+ LR DVT +T L+++E+ V + Sbjct: 627 ACMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTALTPERLRAVENTVQE 686 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691 + Q+ PV + L Y D VRV + + S Sbjct: 687 AVQQDKPVYMEEVPLALTAQVPGLRCLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748 LC GTH+ TG + L I+ + + G R+ AITG+ +AR +++K+ Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQNLAQEVKAATER 806 Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783 L +V + E+ + LQ A RKLQ+ Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETSVMPQWQRRELLATLKMLQRRANTAIRKLQMGQ 866 Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++ + + +S L V+ L ++ S ++L+ K Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQSMGKVLCA 926 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + + F A A +GG G R +AQ G + + A++ ++ Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSTARAY 980 >gi|301115782|ref|XP_002905620.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4] gi|262110409|gb|EEY68461.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4] Length = 897 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 313/918 (34%), Positives = 453/918 (49%), Gaps = 103/918 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58 + +R+ FL+FF+ GH ++PS+SL+P D +L+F N+GMVPFK F G + Y Sbjct: 24 STELRSRFLQFFESQGHRVVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGAKARGY 83 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFKE+AI + W LT+E Sbjct: 84 SRATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKEQAITMCWRFLTQEL 143 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +L RL++TV D+EA +LWK+I+GL KI + +DNFW+M ++GPCGPCSE+F+D Sbjct: 144 ELPIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCSEVFWD 203 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-KQERFILPKMSIDTGMGLERMATVL 237 G+ I ++ ER++E+WNLVFMQF + E LP S+DTGMGLER+A+VL Sbjct: 204 LGDHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLERVASVL 256 Query: 238 QEKTNNYDIDLFKHLIQAS---------------------EQVTGMKY---EGNNIVNHR 273 Q +NY D+F L+ E++ K G I R Sbjct: 257 QGVPSNYHTDVFVPLLTEVATVLDANRSSTLRQSFTSALQEELDPRKNLFGTGKEIQTLR 316 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333 ++ DHLR++ L+ DG+ P+N GRGYVLRRI+RRA+ +A+ LG L Sbjct: 317 IVSDHLRATYALLQDGVFPSNIGRGYVLRRIIRRAIRHAQQLGVRSGSDGILASIAVPGW 376 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393 A + + +E+ F + L G ++ S +L+G AF+LYDT Sbjct: 377 SEA-----AGLQQMRAIVANEERAFEEMLRNGRGAIEKAFSKT--QVMLSGADAFRLYDT 429 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 G+PLDI Q + +GL+ +D ++ + + + S+ ++E+ S Sbjct: 430 FGIPLDITQVLAEEKGLS-VDTEGYDACRKSHKQQTSDRSVFHTQASSEQS-SSTPAATV 487 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 ++F+GY+ L SK D V Sbjct: 488 VSEFVGYEQLSVSKARVLDCWSGSGSAGFS-----------------------------V 518 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + D+ PFY E GGQ+GD G I + + K + E ++ Sbjct: 519 ILDRCPFYPEGGGQVGDRGHLINEDAIAIKCTLPKDTTF------EDISALFLNEATVEA 572 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D + R +++H+ATHLL AL LG HV+Q GS +T D LRFD H +++ E+ Sbjct: 573 HVDRRFRSGCAVHHTATHLLQRALKAELGEHVTQAGSQVTSDRLRFDFAHFGALSADEMA 632 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 S+E VN A L V T + REDA SGA G KY D VRVV V E SS Sbjct: 633 SVEARVNAFAAAELDVSTVELPREDAERSGAICNFGDKYGDVVRVVRVGGEAETPVSSEF 692 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHV++ EI +VSE S+ AG RR+EA+ G +L + + L +A L + Sbjct: 693 CGGTHVNNVREIFPFAMVSEGSVAAGTRRVEAVAGHAGARYLQAKAQTLSDVADQLSTTP 752 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD------VNFMSHIISEV 804 VV RV ++ ++ ++L+ L L+ I V + + Sbjct: 753 AKVVERVAKMHKQMKQLESRVQALGDVLSTLPSTPLASGAIDGAITAPHVELHALNVPGG 812 Query: 805 D--SKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 SK LK + L ++ S +++L+G I + + +A L + Sbjct: 813 GEFSKVLKRRAEFLAEQASPSSVLVVLLGCQ--------IACIANAEAKVHAGKLMQQVV 864 Query: 861 KVLGGGGGGGRPHMAQSG 878 K L GG GGG AQ Sbjct: 865 KSL-GGRGGGNASFAQGS 881 >gi|194039401|ref|XP_001929628.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Sus scrofa] Length = 985 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 277/951 (29%), Positives = 431/951 (45%), Gaps = 91/951 (9%) Query: 4 VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 +++R FL FF+ ++GH L+PS+S+ P DPTL+F N+GM FK IF G P Sbjct: 39 AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPTLLFVNAGMNQFKPIFLGTVDPRSEMAG 98 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116 ++ V QKCVRAGG+HNDL++VG+ HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 99 FRRVANSQKCVRAGGRHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 158 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RL+++ + D E+ +W + G+ A +++ +NFW M +TGP Sbjct: 159 VYGIPEDRLWVSYFGGDPKAGLGADLESRDIWLNL-GVPASRVLSFGPQENFWEMGDTGP 217 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D + +E+WNLVFMQ ++ LP+ +DTGM Sbjct: 218 CGPCTEIHYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 268 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHL 279 GLER+ VLQ K + YD DLF L+ A Q G + +RV+ DH+ Sbjct: 269 GLERLVAVLQGKHSTYDTDLFSPLLNAIHQGCGAPPYSGRVGAADEGHIDTAYRVVADHI 328 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ S IADG+ P G ++RRI+RRA+ ++ L + L+P + +G AYP Sbjct: 329 RTLSICIADGVSPGMSGAPLIVRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGGAYP 388 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGL 396 EL + I + ++ F +L RG +++ L LG ++ +VA+ L GL Sbjct: 389 ELHKNSAQIVSLVSEDEAAFLASLQRGRRIIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 448 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+++ +L +G+ A EE + RA+ G + G Q Sbjct: 449 PLDLVELMLEEKGVQLDSAGLARLAQEEAQHRAQQAEPVQEQGLRLDV-----HALGELQ 503 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVF 515 G + + + V + + G V GQ+ ++ Sbjct: 504 RRG----VPPTDDSPKYSYSLRPSGGYEFSTCEARVLQLYAEDGRAVATTGEGQRYGLLL 559 Query: 516 DQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ D G + + Q + G F+ H +V L+ + L Sbjct: 560 DRTNFYAEQGGQASDRGYLVRVEQQDVLFPVAQAQVCGGFILHEVVAPECLKVGDRVQLH 619 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D R H+A HLL+ AL LG Q GS ++P+ LRFDV P+T +L++ Sbjct: 620 VDEAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHLSPERLRFDVATQAPLTPKQLQA 679 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYE 684 +ED V + + ++ V + L Y D VRV + + Sbjct: 680 VEDTVQEAVGRDEAVYMEEVALARTTHVPGLRSLDEVYPDPVRVVSVGVPVAHALEPASQ 739 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL---MGQDEK 741 S LC GTH+ TG I L IV E + G R+ AITG++AR ++ Sbjct: 740 AALQTSVELCCGTHLLRTGAIGDLVIVGERQLAKGTTRLLAITGEQARQAREVGQSLAQE 799 Query: 742 LKSLASFLKVSQGNVVG--RVEE---------------------IWEEYRKLQLIH--AK 776 +++ A L +VV R+ + + + LQ A Sbjct: 800 VEAAAERLSRGSRDVVEAQRLSKDMGRLTDAVDTSVMPQWQRRELQATLKALQRRANTAI 859 Query: 777 RKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 RKL++ L ++ ++ + +S L V+ L K+ S ++L+ Sbjct: 860 RKLEMGQAVLKTQELLQRHSEGPLIVDTVSAESLSMLVKVVRQLCKQAPSTSVLLLSPQP 919 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + V + F A A +GG G R +AQ G + Sbjct: 920 LGQVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 969 >gi|308803402|ref|XP_003079014.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS) [Ostreococcus tauri] gi|116057467|emb|CAL51894.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS) [Ostreococcus tauri] Length = 1170 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 287/952 (30%), Positives = 442/952 (46%), Gaps = 108/952 (11%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 +R TF+ +F +K H PSS +P +DPTL+F N+GM +K IF G+ P Sbjct: 246 SKRVRDTFINYFIEKQNHTPWPSSPAVPVDDPTLLFANAGMNQYKPIFLGKADPKTALAK 305 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLTK Sbjct: 306 LSRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTKV 365 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY T + DE EA +W K L +++ DNFW M + GPC Sbjct: 366 YCLPEDRLYATYFGGDESQGLEPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPC 423 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D+ + + +EIWN+VF+Q+ +DTGMG Sbjct: 424 GPCTEIHYDRIGGRDASS-LVNMDDPNCLEIWNVVFIQY-------------THVDTGMG 469 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280 ER+ ++LQ K +NYD D+F + + +++T G G + +RV+ DH+R Sbjct: 470 FERLTSILQNKPSNYDTDVFMPIFKEIQRITGASPYTGLLGKSDVGEKDMAYRVVADHIR 529 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + IADG P ++GR YVLRR++RRA+ + R LG + L+P + ++G +PE Sbjct: 530 TLCIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFAQLVPIVVKQLGYVFPE 589 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397 LI+ K I E + E+ FG+TL++G+ VL K +++G AF L++++G P Sbjct: 590 LIEKKKHIVEIIAEEETSFGRTLEKGIAQFKKVLDAATKEGRTVISGPEAFLLWESYGFP 649 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 D+++ + G +D F +A E + ++RA G L + AT Sbjct: 650 NDLVELMAEEVGFT-LDNEGFAKAFAEAQEKSRAGGKKSGG-------VQLLFEAEAT-- 699 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFD 516 + + +S V AI+ V+ + V + Sbjct: 700 -------AWLQNNDVSTTNDSEKYAVGRPSHTSTVAAILTPSGFVKSTADAEGPYGFVLN 752 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ DTG + + DV+ A FV H G + + +D Sbjct: 753 STTFYAESGGQVADTGAISTPNGSVSVEDVKVAAG--FVLHTGEVSGTVSVGEAATCAVD 810 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 Y+ R + NH+ TH+L++AL + G V Q GS + + LRFD + +K +T+ ++ IE Sbjct: 811 YERRENIMPNHTMTHVLNYALRKVAGDGVDQKGSLVDEEKLRFDFSLNKGLTTKQIADIE 870 Query: 637 DNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVE-----------YE 684 VN+ I L V R + +G A+ G Y D VRVVSV E Sbjct: 871 AVVNEQINAKLSVDKREVALAKAMTINGLRAVFGEVYPDPVRVVSVGPSIDELLADPINE 930 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 +S CGGTH+ +T ++ E+ I GIRRI A T A+ + +E + + Sbjct: 931 KWVNYSIEFCGGTHLQTTDFAEQFVVLEETGISKGIRRITAATRGTAKKAIARANELMAT 990 Query: 745 LAS--------------FLKVSQ--------------GNVVGRVEEIWEEYRKLQLIHAK 776 + + LKV+ + +++ + E ++ Sbjct: 991 VKACDALSGEALNTELNVLKVAIDTGSMPTVAREQIREELNRQIKRLLEAAKEAAAAAKA 1050 Query: 777 RKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + L E + K A F++ + E D+ ++ + G+ + + K Sbjct: 1051 QALVDVQEKTAATKTAGAKYFVASLADETDAGAMREAATI---AFKEGVACTLFSKVKGK 1107 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V + V D+ S LGG GGGG+ +AQ GPN Sbjct: 1108 EFVYVSVPPDVSIDVKG--WLAASCAPLGGKGGGGKNGVAQGQGPNVEAVGD 1157 >gi|225550618|ref|ZP_03771567.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379772|gb|EEH02134.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 906 Score = 592 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 273/945 (28%), Positives = 460/945 (48%), Gaps = 97/945 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 5 STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D Sbjct: 65 NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178 Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286 Q+ N+D D+F + ++ EQ + KY+ N ++VI DH+R++ F I Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345 ADG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358 Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P+++++ Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +C + +D+ +F+ + + ++A+ L ++ SL + + F Y++ Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 R ++ + + + + + + + VVFD T FYA Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ DTG I + + + DV K VHH + ++L I+ Q+R+ + Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N+++ Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700 N V M+ ++A A GA A Y ++RV+ + S LCGGTH Sbjct: 627 QSNFDVQELHMDLDEAKAVGAVAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741 T EI + IV +S AG RI +TG +L D K Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740 Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793 L L + +S + + + E+ + ++ K+ + + D+ Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQNAKQAIIDIKNTFNAQQ 800 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E ++ N Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + G GGG+P+ Q G K D+ + + ++ Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|188024171|ref|ZP_02996895.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518577|ref|ZP_03004033.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524540|ref|ZP_03004530.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273661|ref|ZP_03206196.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551130|ref|ZP_03772076.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|188018805|gb|EDU56845.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997839|gb|EDU66936.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659576|gb|EDX52956.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249689|gb|EDY74470.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225378945|gb|EEH01310.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 906 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 273/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 5 STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D Sbjct: 65 NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178 Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286 Q+ N+D D+F + ++ EQ + KY+ N ++VI DH+R++ F I Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345 ADG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358 Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P+++++ Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +C + +D+ +F+ + + ++A+ L ++ SL + + F Y++ Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + ++ + + + + + + + VVFD T FYA Sbjct: 471 KWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ DTG I + + + DV K VHH + ++L I+ Q+R+ + Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N+++ Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700 N V M+ ++A A GAAA Y ++RV+ + S LCGGTH Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741 T EI + IV +S AG RI +TG +L D K Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740 Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793 L L + +S + + + E+ + ++ K+ + + D+ Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E ++ N Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + G GGG+P+ Q G K D+ + + ++ Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|195867853|ref|ZP_03079852.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660430|gb|EDX53688.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 906 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 274/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 5 STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D Sbjct: 65 NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178 Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286 Q+ N+D D+F + ++ EQ + KY+ N ++VI DH+R++ F I Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345 ADG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358 Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P+++++ Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +C + +D+ +F+ + + ++A+ L ++ SL + + F Y++ Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 R ++ + + + + + + + VVFD T FYA Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ DTG I + + + DV K VHH + ++L I+ Q+R+ + Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N+++ Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700 N V M+ ++A A GAAA Y ++RV+ + S LCGGTH Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741 T EI + IV +S AG RI +TG +L D K Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740 Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793 L L + +S + + + E+ + ++ K+ + + D+ Sbjct: 741 LNDLYNAFANWKNLSIEDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E ++ N Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + G GGG+P+ Q G K D+ + + ++ Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|145346253|ref|XP_001417607.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577834|gb|ABO95900.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 967 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 283/918 (30%), Positives = 427/918 (46%), Gaps = 97/918 (10%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 S +R TF+ +F +K GH PSS +P NDPTL+F N+GM +K IF G+ P Sbjct: 30 SSRVRDTFVNYFIEKQGHVNWPSSPAVPVNDPTLLFANAGMNQYKPIFLGKADPKTAFAK 89 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI +AWDLLT Sbjct: 90 LTRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGMAWDLLTNV 149 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L RLY T + DE EA +W K L +++ DNFW M + GPC Sbjct: 150 YGLAPDRLYATYFGGDESQGLQPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPC 207 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D+ + + +EIWN+VF+Q+ ++ LP +DTGMG Sbjct: 208 GPCTEIHYDRI-GGRDAASLVNMDDPNCLEIWNVVFIQYNREEGGVLKSLPSKHVDTGMG 266 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280 ER+ ++LQ K +NYD D+F + + ++++ G + G + +RV+ DH+R Sbjct: 267 FERLTSILQNKMSNYDTDVFMPIFKEIQRISGAAPYTGLLGKEDVGEKDMAYRVVADHIR 326 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + S IADG P ++GR YVLRR++RRA+ + R LG + L+P L ++G+ +PE Sbjct: 327 TLSIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFHKLVPCLIQQLGAVFPE 386 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 L+ + I E + E+E FG+TL +G+ VL + +++G AF L++++G P Sbjct: 387 LVAKQTHITEIIADEEESFGRTLQKGIDQFGKVLAAAKQEGRTVISGPEAFLLWESYGFP 446 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 D+ + + G +D F QA E + ++RA G L + AT Sbjct: 447 NDLTELMAEENGFT-LDNEGFAQAFAEAQEKSRAGGKKSGG-------VQLLFEAEAT-- 496 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFD 516 ++ + S V AI+ ++ + D Sbjct: 497 -------AWLQNNGVAITKDEEKYASGRPTLESTVTAIMSPSGFIKSTSDAEGPYGFFMD 549 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE+GGQ+ D+G + ++DV K +V H G + + +D Sbjct: 550 ATTFYAESGGQVCDSGLITTPSGSMSVSDV--KVAAAYVMHTGDVSGTVSVGDAAKCAVD 607 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 Y R + NH+ TH+L++AL ++G V Q GS + + LRFD +H+K T+ ++ IE Sbjct: 608 YDRRDNIMPNHTMTHVLNYALRKVMGDGVDQKGSLVDEEKLRFDFSHNKGATTKQIAEIE 667 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YE 684 VN+ I L V R + + A+ +G A+ G Y D VRVVSV + Sbjct: 668 AIVNEQIKSKLAVDKREVALDKAMTINGLRAVFGEVYPDPVRVVSVGPSIDDLLANPSDD 727 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ----------RARSH 734 +S CGGTH++ST I+ ES I GIRRI T + + Sbjct: 728 KWKNYSIEFCGGTHLASTDFAEQFVILEESGIAKGIRRITGATREGAKAALARAADVLAL 787 Query: 735 LMGQ-----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN------- 782 + + K L V V+ ++ EE R KR L Sbjct: 788 VKSCDSLSGEALDKQLGVLKNVVDTEVLPVIQR--EEIRAAVTSQVKRVLDAQKEAAAAA 845 Query: 783 --------VEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 E + K A F++ + D+ +K GI + + + Sbjct: 846 KAQAIVDVQEKTAATKSAGAKYFVATLADGTDAGAMKEAAAV---AFAEGIACTLLANCK 902 Query: 834 KKASVLIVVTEDLLDRFN 851 K V V D+ Sbjct: 903 GKEFVYCSVPPDVGIDVK 920 >gi|254470073|ref|ZP_05083477.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062] gi|211960384|gb|EEA95580.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062] Length = 551 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 309/560 (55%), Positives = 398/560 (71%), Gaps = 26/560 (4%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GMVPFKN+FTG EK Y T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMVPFKNVFTGLEKRDYVRATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156 SFG YFKE AI+LAW+L+TKE+ L +L +TVY ED+EAF +WKK++G + +KIIRI T Sbjct: 61 SFGDYFKENAIELAWNLITKEYGLPADKLLVTVYSEDDEAFNIWKKLTGFADEKIIRIPT 120 Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQE 215 +DNFW+M +TGPCGPCSEIF+D GE I GG PGS E+G+R+IEIWNLVFMQ+EQ + Sbjct: 121 SDNFWAMGDTGPCGPCSEIFYDHGEQIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLADK- 179 Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI 275 R LP+ SIDTGMGLER A ++Q NNY+IDLFK LI +SE +TG++ G +HRVI Sbjct: 180 RIDLPRPSIDTGMGLERFAAIMQGVHNNYEIDLFKALIASSEHLTGVEAAGKAQASHRVI 239 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335 DHLRS +FLIADG+LP+NEGRGYVLRRIMRRAM +A LLG EP++ +LP L EMG Sbjct: 240 ADHLRSMAFLIADGVLPSNEGRGYVLRRIMRRAMRHANLLGAKEPVIFKMLPTLVREMGQ 299 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PEL +A+ LIEET++ E++RF KTL+RGL LL+ S LG + L+G+ AFKLYDT+G Sbjct: 300 AFPELPRAEKLIEETIQLEEKRFIKTLERGLGLLEDATSSLGSGDQLDGETAFKLYDTYG 359 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ QD L +D FN A+E QR+ ARA G G T+ IWFS+KE+ GAT Sbjct: 360 FPLDLTQDALR-NREIAVDTDGFNTAMERQRAEARAAWAGSGDAATDAIWFSIKEQAGAT 418 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +F+GY+ T +V ++V+ GE V+ G++ ++ Sbjct: 419 EFLGYE-----------------------TEKAEGVVLSLVKDGEEVKVLKQGEEGSLIL 455 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +QTPFY E+GGQ+GD G + DG+ + +T+ QKKA+G+FVH VE G + + +L L + Sbjct: 456 NQTPFYGESGGQVGDCGTMVADGVSITVTNTQKKADGLFVHSVRVESGDVNVDDALELIV 515 Query: 576 DYQNRRQLSINHSATHLLHH 595 D+ R + NHSATHL+H Sbjct: 516 DHARRSAIRSNHSATHLVHE 535 >gi|171920911|ref|ZP_02932062.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209554598|ref|YP_002284771.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|171903130|gb|EDT49419.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209542099|gb|ACI60328.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 906 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 273/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 5 STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D Sbjct: 65 NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178 Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286 Q+ N+D D+F + ++ EQ + KY+ N ++VI DH+R++ F I Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345 ADG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358 Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P+++++ Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +C + +D+ +F+ + + ++A+ L ++ SL + + F Y++ Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + ++ + + + + + + + VVFD T FYA Sbjct: 471 KWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ DTG I + + + DV K VHH + ++L I+ Q+R+ + Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N+++ Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700 N V M+ ++A A GAAA Y ++RV+ + S LCGGTH Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741 T EI + IV +S AG RI +TG +L D K Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740 Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793 L L + +S + + + E+ + ++ K+ + + D+ Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQNAKQAIIDIKNTFNAQQ 800 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E ++ N Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + G GGG+P+ Q G K D+ + + ++ Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|261219548|ref|ZP_05933829.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1] gi|260924637|gb|EEX91205.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1] Length = 723 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 365/731 (49%), Positives = 490/731 (67%), Gaps = 36/731 (4%) Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPK 221 M +TGPCGPCSEIF+D G+ I GG PGS E +G+R+IEIWNLVFMQFEQQ + R LP+ Sbjct: 1 MGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPR 60 Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281 SIDTGMGLER+A VLQ +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+ Sbjct: 61 PSIDTGMGLERIAAVLQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRA 120 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 SSFLIADG+LP+NEGRGYVLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI Sbjct: 121 SSFLIADGVLPSNEGRGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELI 180 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 +A+ LI ETL+ E+ RF KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ Sbjct: 181 RAESLISETLKLEETRFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLT 240 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 QD L RG +D FN A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 241 QDALRQRG-IAVDTEGFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE 299 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T ++ ++V+ V G+ + VV +QTPFY Sbjct: 300 -----------------------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFY 336 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E+GGQ GDTG G+G + + D QKK EG+FVH V G + + L +D R Sbjct: 337 GESGGQQGDTGTISGEGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRT 396 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NHSATHLLH AL LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+ Sbjct: 397 RIRSNHSATHLLHEALRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANE 456 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGG 696 II QN PV TR+M +DAIA GA AL G KY D VRVVS+ + G +S LCGG Sbjct: 457 IILQNAPVTTRLMAVDDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGG 516 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV TG+I L+ I+SE + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V Sbjct: 517 THVRQTGDIGLVRIISEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADV 576 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELK 810 + RV + +E +KL+ A + +L + + + VNF+ I++ V ++LK Sbjct: 577 LDRVNALIDERKKLERELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLK 636 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D +K++ SG+++ +G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGG Sbjct: 637 PLADEGKKQVGSGVVLFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGG 696 Query: 871 RPHMAQSGGPN 881 RP MAQ+GGP+ Sbjct: 697 RPDMAQAGGPD 707 >gi|185178972|ref|ZP_02964729.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209253|gb|EDU06296.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 906 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 272/945 (28%), Positives = 460/945 (48%), Gaps = 97/945 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 5 STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D Sbjct: 65 NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178 Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286 Q+ N+D D+F + ++ EQ + KY+ N ++VI DH+R++ F I Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345 ADG +P+N+ RGY+LRR++RR M R L L + ++ A+ + M Y L K Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMSDFYTYLKDEKT 358 Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P+++++ Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +C + +D+ +F+ + + ++A+ L ++ SL + + F Y++ Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + ++ + + + + + + + VVFD T FYA Sbjct: 471 KWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ DTG I + + + DV K VHH + ++L I+ Q+R+ + Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N+++ Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700 N V M+ ++A A GAAA Y ++RV+ + S LCGGTH Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741 T EI + IV +S AG RI +TG +L D K Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740 Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793 L L + +S + + + E+ + ++ K+ + + D+ Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E ++ N Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + G GGG+P+ Q G K D+ + + ++ Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|47937910|gb|AAH71378.1| Aars protein [Danio rerio] Length = 757 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 264/758 (34%), Positives = 392/758 (51%), Gaps = 60/758 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +EIWNLVF+QF ++++ LPK SIDTGMG Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ G + + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A+PE Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G PLD Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I RG+ G+D+++F + ++ A+ S G GSG + I + Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470 Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 D LR D K V A+ ++ V+E ++GQ+ V+ Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529 Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ D G + R++ T + G +V H G L+ L Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E Sbjct: 590 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682 ++ E+ +IA V G A+ Y D VRVVS+ Sbjct: 649 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 708 Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 G + S CGGTH+ ++ IVSE +I Sbjct: 709 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIA 746 >gi|255727014|ref|XP_002548433.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404] gi|240134357|gb|EER33912.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404] Length = 700 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 239/693 (34%), Positives = 352/693 (50%), Gaps = 47/693 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R+TFL++F++N H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 26 TAAKVRSTFLDYFKQNKHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAT 85 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK Sbjct: 86 LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDFSWELLTKV 145 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T + DE EA + W K G+ D I+ + DNFW M + GPC Sbjct: 146 YGLPEDRLYVTYFGGDEKQGLEPDLEAKEFWLK-VGVPEDHILPGSVKDNFWEMGDQGPC 204 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI FD+ + + IE+WN+VF+QF ++ LP IDTGMG Sbjct: 205 GPCSEIHFDRI-GGRNASDLVNMDDPNVIEVWNVVFIQFNREADGNLRSLPNKHIDTGMG 263 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ ++LQ+K++NYD D+F + ++TG++ +RVI DH+R Sbjct: 264 FERLVSILQDKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIADHVR 323 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F I DG +P NEGRGYVLRRI+RR Y R L+ + + +P Sbjct: 324 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 383 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396 E+ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+G Sbjct: 384 EIASGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 443 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL ID F +A EE R ++ + G + +L E Sbjct: 444 PVDLTRLMAEEAGLK-IDEPGFERAKEESREASKGNGTKDGKTLVKLDVHALSE------ 496 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515 K D T V + V I + V+ + ++ Sbjct: 497 -----------LDKNDAIPKTNDEFKYGTENVKATVVGIYDGSKFVDSIEDSSVQCGILL 545 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+TPFYAE GGQ DTG + DG + G +H + G L ++ T Sbjct: 546 DKTPFYAEQGGQEYDTGKIVIDGKSEFNVSNVQVYAGYVLHTGNILEGKLSVGDEIIATY 605 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + ++ EL+ + Sbjct: 606 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQALSPKELEKV 665 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668 E N I N V + + A Sbjct: 666 EAISNKYIKNNDKVFYKDVALAQAKEITGFESC 698 >gi|255587004|ref|XP_002534095.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223525858|gb|EEF28289.1| alanyl-tRNA synthetase, putative [Ricinus communis] Length = 815 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 278/839 (33%), Positives = 434/839 (51%), Gaps = 67/839 (7%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151 MLGNFSFG YFK+ AI+ AW+L TKEF L RL+++VY +D+EAF++W G+ ++I Sbjct: 1 MLGNFSFGDYFKKEAIKWAWELSTKEFGLAADRLWVSVYKDDDEAFEIWHNEVGVPTERI 60 Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211 ++ DNFW+ TGPCGPCSE+++D G L + R+IE +NLVFMQ+ + Sbjct: 61 KKMGEEDNFWTSGITGPCGPCSELYYDFHPE-RGFLDVDLGDDTRFIEFYNLVFMQYNKM 119 Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN 271 + L + +IDTG+GLER+A +LQ+ NNY+ DL +I+ ++ + Y + Sbjct: 120 DDGSLESLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKVSELANLSYSVADDQT 179 Query: 272 ---HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-------- 320 ++I DHLR+ FLI+DG+LP+N GRGYV+RR++RR + RLLG Sbjct: 180 KTKLKIIGDHLRAIVFLISDGVLPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGKGNLDGA 239 Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS------ 374 + + + ++ I E L+ E+ RF +TL+RG LLD +L Sbjct: 240 FIPAIAEKVIELSVHIDSDVKARASRILEELQREEFRFVQTLERGEKLLDQMLEDALSSG 299 Query: 375 -HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433 G L+G F LYDT+G P++I ++ G+ ID+ F+ +E+QR +++A Sbjct: 300 QKKGVIPCLSGKDVFLLYDTYGFPVEITTEVAEEHGVK-IDMDGFDIEMEKQRRQSQAAH 358 Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493 + + L E T+F+GYD L +++ Sbjct: 359 NVIKLTVEDG--GDLSENVSDTEFLGYDTL-----------------------SARAVID 393 Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR------LQITDVQ 547 +++ G+ V + G +VE++ ++TPFYAE+GGQ+GD G ++I DVQ Sbjct: 394 SLLVNGKPVIQVPEGSEVEILLNKTPFYAESGGQIGDHGFLYVTEGESKPRAIVEIKDVQ 453 Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607 K +FVH + G+L + +D + R++ ++H+ATHLL AL ++G SQ Sbjct: 454 KSLGNVFVHKGTIREGLLEVGREVEAAVDPKLRQRAKVHHTATHLLQSALKKVIGQETSQ 513 Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667 GS + D LRFD +P+ EL+ IE +N I + T++M+ DA +GA A+ Sbjct: 514 AGSLVAFDRLRFDFNFHRPLLDTELEEIEALINGWIGDATLLQTKVMSITDAKNAGAIAM 573 Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 G KY ++VRVV V S LCGGTHVS+T EI I+SE I +GIRRIEA+ Sbjct: 574 FGEKYGEQVRVVEVPG-----VSMELCGGTHVSNTSEIRAFKIISEQGIASGIRRIEAVA 628 Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---- 783 G+ ++ +D ++ L S LKV V RVE + EE R + + + + V Sbjct: 629 GEAFIEYINARDSQITRLCSTLKVKAEEVTTRVENLLEELRIARNEVSAMRSKAAVYKAS 688 Query: 784 ----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASV 838 + +S + + + ++D+ LKS + L + ++L E K S+ Sbjct: 689 TMASKAVSVGTSKSIRVLVESMDDIDADSLKSAAEYLIDALGDPAAVVLGSYPDEGKVSL 748 Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + T +++ A AK+ GGGG GGRP+ AQ+GG A+ + L Sbjct: 749 VAAFTPGVVNLGVQAGKFIGPIAKLCGGGG-GGRPNFAQAGGRKPGNLPSALEKAHADL 806 >gi|284931130|gb|ADC31068.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. F] Length = 902 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 261/935 (27%), Positives = 436/935 (46%), Gaps = 96/935 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR +L+FF+ HE++ S SL+P NDP+L++ N+G+ K F+G+E P+ + Sbjct: 6 SGSQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLA 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 Q+C+RA ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ ++LLTK + L++ Sbjct: 66 NSQRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYIT+Y++D +AF W G+ IIR NFW + +GPCGP +EI++D+GE Sbjct: 122 DKLYITIYEDDNDAFNYWVDQ-GIDPHHIIRCDKKRNFWDLG-SGPCGPSTEIYYDRGEK 179 Query: 183 IPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E +RYIE+WN+VF QF L + +IDTG LER A +L Sbjct: 180 YDPNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELVRKNIDTGASLERFACIL 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286 Q+ NYD DL+ +I+ E+ T KY ++ + RVI DHL+ F I Sbjct: 240 QDVPTNYDTDLYLPIIRTIEKHTNHKYVVDHYFSKDQSEQDVLRAFRVIADHLKCGVFAI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+LP + R Y++R+++RRA YA+ L ++ + + + LI K + Sbjct: 300 ADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNKEI 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + + +E F KTLD G + + + ++ FKL +T+G PLD+++++ Sbjct: 360 VIQAITNEANNFTKTLDYGFEIFNE----AKTTNNITAEMIFKLVETYGFPLDLIKELSA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 + +D+ F + ++ + ++A++ +G + +L + ++F YD Sbjct: 416 EAKIK-LDLDGFEELFKKHQEISKANNGEVGLKKQNE---NLLKFETQSKF-YYD----- 465 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAG 525 N + + V AI V++ G VF+ TP YA +G Sbjct: 466 ------------------KNNIKTKVVAIFDDKFNPVDQIEVG-SGWAVFESTPIYATSG 506 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G + G + D KA H ++ + L D R+ + Sbjct: 507 GQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLH-HFKKASFWLNEKVELMHDENWRKLVRK 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHS H+LH L + + Q+G+ + D + +T +L IE + +IA Sbjct: 566 NHSLEHILHATLKNTINETIKQSGAFKSAAKATLDFNYPTKLTDEDLDKIETKMRQVIAD 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV ++ E + A A +Y + ++ G +S LCGGTHV +T EI Sbjct: 626 KIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIK---IGDYSVELCGGTHVDNTKEI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKSLASF---------------- 748 +I S+ AG RIE I+ ++L+ + ++K + Sbjct: 683 EECFITDLYSLGAGRWRIEIISSYETIYNYLVDKQNEIKQEKNHMFNELGNYDLTHYLDF 742 Query: 749 --------LKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--N 795 L S ++ + E+I EEY+ ++L K+K + + + ++ Sbjct: 743 SKKLHSFNLPTSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIKKLALDNLEHK 802 Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855 + + + K L L + + + S + K + LI + ++ D+ NA L Sbjct: 803 IVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKS-DNKINYLIGI-KNATDKLNAKLL 860 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGG---PNGNKADQ 887 V+ G GGG+ + AQ G + K Sbjct: 861 IDKV-NVMFGAKGGGKQNFAQGGFSTDKDVGKLKA 894 >gi|289448204|ref|ZP_06437948.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CPHL_A] gi|289421162|gb|EFD18363.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CPHL_A] Length = 828 Score = 589 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 288/851 (33%), Positives = 432/851 (50%), Gaps = 70/851 (8%) Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137 T R FF+M NFSFG YFK AI+LAW LLT + LD R++ TVY +D+EA Sbjct: 4 TTR---FFQMGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAV 60 Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197 +LW++++GL A++I R DN+WSM GPCGP SEI++D+G E RY Sbjct: 61 RLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RY 119 Query: 198 IEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251 +E+WNLVFMQ E+ + LP+ +IDTGMG+ER+A VLQ+ N Y+ DL + Sbjct: 120 LEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRP 179 Query: 252 LIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308 ++ +V Y + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR Sbjct: 180 VLDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRV 239 Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368 + A+LLG ++ L+ + MG +YPEL+ I +E+ F +TL G L Sbjct: 240 IRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRL 299 Query: 369 LDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426 + V S +L+G AF L+DT+G P+++ ++ GL +D I F + + EQR Sbjct: 300 FEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQR 358 Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 RA+A + + + GAT+F G+D LR Sbjct: 359 RRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS--------------------- 397 Query: 487 GVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-- 536 + + I G+ V A GQ+VE+V D+TP YAE+GGQ+ D G G Sbjct: 398 --QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTG 455 Query: 537 --DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + R +TDVQK A+ ++VH VE G +++ +D RR + HS TH++H Sbjct: 456 SSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVH 515 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG + Q GS P LRFD P+T + +E+ N+ + + V T Sbjct: 516 AALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTE 575 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A A GA AL G Y D VRVV + GG S LCGGTHVS+T +I + I+ ES Sbjct: 576 QLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGES 631 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI +G+RR+EA G + HL + + LAS LKV V RV + E R + Sbjct: 632 SIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKEL 691 Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIM 826 + ++ +I +V ++ +S + + +L+S++ ++ K+ S ++ Sbjct: 692 ERVRMASVRAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVA 751 Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L+ + + + D A DL + A + G GGG+ +AQ G N Sbjct: 752 LIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGI 810 Query: 886 DQAIAGVASFL 896 D A+ V S + Sbjct: 811 DAALDAVRSEI 821 >gi|52630311|ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus] gi|115502845|sp|Q14CH7|SYAM_MOUSE RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|109730201|gb|AAI13780.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus] gi|109730687|gb|AAI13173.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus] Length = 980 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 274/964 (28%), Positives = 432/964 (44%), Gaps = 96/964 (9%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+++ P DP+L+F N+GM FK IF G P + Sbjct: 35 AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 95 RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D E +W + G+ A +++ +NFW M +TGPC Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 214 GPCTEIHYDL---------AGGVGSPQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q G +RV+ DH+R Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ L + L+P + +GSAYPE Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397 L + + I + ++ F +L RG ++D + LG ++ +VA+ L G+P Sbjct: 385 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 444 Query: 398 LDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 LD+++ +L +G+ + Q + R++ L + T Sbjct: 445 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 504 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVV 514 + V + + G V +GQ+ ++ Sbjct: 505 -----------TDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQRCGLL 553 Query: 515 FDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE GGQ D G + + G F+ H + L+ + L Sbjct: 554 LDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQVQL 613 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D R + H+ATHLL AL LG Q GS + P+ LRFDV +T+ +L+ Sbjct: 614 YVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQLR 673 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----------VEY 683 ++E V +++ Q+ PV + L Y D VRVVS Sbjct: 674 TVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPAS 733 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740 + S LC GTH+ STG + L I+ E + GI R+ AITG+ +AR + Sbjct: 734 QAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQ 793 Query: 741 KLKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--A 775 ++++ + L ++ R+ +E+ + LQ A Sbjct: 794 EVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANTA 853 Query: 776 KRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 RKL+ ++ ++ + +S L V+ L K+ S ++L+ Sbjct: 854 IRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLLLSPQ 913 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 V +D F A A +GG G R +AQ G + + A+ Sbjct: 914 PTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTG-HTADLEAALGT 971 Query: 892 VASF 895 ++ Sbjct: 972 ARAY 975 >gi|51260239|gb|AAH79844.1| Aars2 protein [Mus musculus] Length = 975 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 274/964 (28%), Positives = 432/964 (44%), Gaps = 96/964 (9%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+++ P DP+L+F N+GM FK IF G P + Sbjct: 30 AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 89 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 90 RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 149 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D E +W + G+ A +++ +NFW M +TGPC Sbjct: 150 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 208 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 209 GPCTEIHYDL---------AGGVGSPQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 259 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q G +RV+ DH+R Sbjct: 260 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 319 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ L + L+P + +GSAYPE Sbjct: 320 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 379 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397 L + + I + ++ F +L RG ++D + LG ++ +VA+ L G+P Sbjct: 380 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 439 Query: 398 LDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 LD+++ +L +G+ + Q + R++ L + T Sbjct: 440 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 499 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVV 514 + V + + G V +GQ+ ++ Sbjct: 500 -----------TDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQRCGLL 548 Query: 515 FDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE GGQ D G + + G F+ H + L+ + L Sbjct: 549 LDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQVQL 608 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D R + H+ATHLL AL LG Q GS + P+ LRFDV +T+ +L+ Sbjct: 609 YVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQLR 668 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----------VEY 683 ++E V +++ Q+ PV + L Y D VRVVS Sbjct: 669 TVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPAS 728 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740 + S LC GTH+ STG + L I+ E + GI R+ AITG+ +AR + Sbjct: 729 QAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQ 788 Query: 741 KLKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--A 775 ++++ + L ++ R+ +E+ + LQ A Sbjct: 789 EVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANTA 848 Query: 776 KRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 RKL+ ++ ++ + +S L V+ L K+ S ++L+ Sbjct: 849 IRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLLLSPQ 908 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 V +D F A A +GG G R +AQ G + + A+ Sbjct: 909 PTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTG-HTADLEAALGT 966 Query: 892 VASF 895 ++ Sbjct: 967 ARAY 970 >gi|156101531|ref|XP_001616459.1| alanyl-tRNA synthetase [Plasmodium vivax SaI-1] gi|148805333|gb|EDL46732.1| alanyl-tRNA synthetase, putative [Plasmodium vivax] Length = 1197 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 266/978 (27%), Positives = 444/978 (45%), Gaps = 129/978 (13%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----Q 59 +R F+ +F++ H ++ S+S+IP ND TL+FTN+GM FK IF GQ + Sbjct: 211 EEVRGGFINYFKEKNHTVVESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKSSDLGKLK 270 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +I AWDLLT + Sbjct: 271 RAVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNVYK 330 Query: 120 LDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 +D RLY+T + ED E K+W K + +I+ +NFW MA+TGPCG Sbjct: 331 IDPNRLYVTYFGGDEKLASCPEDLETKKIWLKY--VDESRILPFGMKENFWEMADTGPCG 388 Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 PCSEI +D+ +++ +EIWN+VFMQ+ + K+ LP IDTGMGL Sbjct: 389 PCSEIHYDRIGNRDASS-LVNKDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGMGL 447 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVDHLR 280 ER+ ++LQ +NYD DLF + + +++ + +RV+ DH+R Sbjct: 448 ERITSILQNVESNYDTDLFMPIFKQIKEIFNYLPEYGGKVNEEDVDRIDYAYRVVSDHIR 507 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLMMHLLPALCTEMGSAY 337 + I+DG LP NEGR YV+RRI+RRA+ + + G L+ ++C + + Sbjct: 508 CVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVGSNVLWFYKLVDSVCHILNKCF 567 Query: 338 PELIQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYD 392 +L I+ ++ E+ F +TL++G+ + ++ G D + +G AF LY Sbjct: 568 TDLKDEDRVNYIKSVIKQEEMVFNRTLEKGVDQFNKIIKRGNTSGGDNLFSGKDAFDLYT 627 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT--EKIWFSLKE 450 ++G P+D++Q + + +++ FN+ + + + ++ + + LKE Sbjct: 628 SYGFPIDLVQIMCEEKNFK-LNMTEFNELFRKHQLVSDTNNFKINKFFDLPVEKAHELKE 686 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVS 507 K+G + + + ++ V + V I ++ A Sbjct: 687 KHG-----------VAATVDHYKYEWNNADGKNVMAKVDTGVVVIYDGENFLDSIETASE 735 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 +K ++ +T FY E GGQ+ DTG + ++ ++ +VQ K +H +++ G ++ Sbjct: 736 DKKYALILRETNFYYENGGQIYDTGVIQNEQMKFEVVNVQ-KMNEYVLHIGVLQEGKIQK 794 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-------------------- 607 + +++ R+ ++ NH+ATHLL+ + +L +V Sbjct: 795 NDCVHTVVNFDRRKLVACNHTATHLLNFVIKKVLTEYVMHSKGGAQNGDLAHTPNEKEQT 854 Query: 608 ----------NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 GS + + LRFD + + ++ + IE VND+I Q L V R M+ + Sbjct: 855 GGNSIFNCDQKGSLVDDEKLRFDFSFFQNVSDELVSKIESQVNDLIRQELSVSVRTMDLK 914 Query: 658 DAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEI 705 ++ G A+ Y D V VV ++ + + S LCGGTH+++T I Sbjct: 915 ESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYLCSIELCGGTHIANTKFI 974 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL---------------- 749 I SE SI GI RI A+T ++A D+ L Sbjct: 975 KKFVITSEESIGKGIYRINAVTNKKAEEVEAKFDDLLAKYKHIFDDPNEGKLADVQTYKR 1034 Query: 750 ------------KVSQGNVVGRVEE-IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796 K + + ++E+ I E+ + +Q K +D + + V Sbjct: 1035 VLKEDKFLPYIRKNQILHNLEKIEKNIIEKTKNMQKELFN-KATTIGKDYALEDKSGVLL 1093 Query: 797 MSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAV 853 + + K L+ + + K I EK + V + L A Sbjct: 1094 DVKLFDALSGNQKVLEKIAQSYC-KHNKLCSYFFIIDDEKNTYCVFEVKDSLKGTSIQAD 1152 Query: 854 DLARLSAKVLGGGGGGGR 871 + + + G GGG+ Sbjct: 1153 AFMKEIMQSVEGHSGGGK 1170 >gi|147677395|ref|YP_001211610.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] gi|146273492|dbj|BAF59241.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] Length = 537 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 228/556 (41%), Positives = 346/556 (62%), Gaps = 36/556 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK FTG KP Y V Sbjct: 1 MTGNEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRV 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+++VG+T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L Sbjct: 61 TTCQKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+I+++ +D+EAF++W K G+ A +I+R+ + NFW + GPCGPCSEI+ D G Sbjct: 117 ADKLWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGA 175 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +R++EIWNLVF+QF + + L IDTG GLER+A+V+Q Sbjct: 176 ERGCGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQG 235 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N+D DLF+ ++ + + G+KY +G V +VI DH R+ +F +ADG LP+NEGR Sbjct: 236 VPTNFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + RLLG +P + + A+ +MG YPEL+ + + +R E+ER Sbjct: 296 GYVIRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEER 355 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 FG+TL +G +L+ +++ + +++G+ AF+LYDT+G PL++ Q++ +GL +D Sbjct: 356 FGETLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDT 414 Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +A+EEQR RAR+ + ++ ++E+ G T F+GYD L Sbjct: 415 DGFGRAMEEQRQRARSARQETDYISGRDAMFKKMREEVGETVFVGYDALE---------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G Sbjct: 465 -------------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKV 511 Query: 535 IGDGIRLQITDVQKKA 550 + ++I +V K Sbjct: 512 TAADLEVEIHEVTKPV 527 >gi|157818067|ref|NP_001100361.1| alanyl-tRNA synthetase, mitochondrial [Rattus norvegicus] gi|313471549|sp|D3ZX08|SYAM_RAT RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|149069292|gb|EDM18733.1| alanyl-tRNA synthetase like (predicted) [Rattus norvegicus] Length = 985 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 269/969 (27%), Positives = 435/969 (44%), Gaps = 101/969 (10%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P + Sbjct: 35 AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFK+ A +AW+LLT+ Sbjct: 95 RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 154 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D E +W + G+ A +++ +NFW M +TGPC Sbjct: 155 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 213 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 214 GPCTEIHYDL---------AGGMGPPQLVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 264 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q + +RV+ DH+R Sbjct: 265 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 324 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ L + +L+P + +G+AYPE Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 384 Query: 340 LIQAKL-----LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYD 392 L + + I + ++ F +L RG ++D + LG ++ +VA+ L Sbjct: 385 LQKNSVKVLIWEIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSG 444 Query: 393 THGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 G+PLD++Q +L +G+ + Q + R++ + G L Sbjct: 445 NLGIPLDLVQLMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDVHALEELHR 504 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQ 509 + T + + V + + G V GQ Sbjct: 505 QGIPT-----------TDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQ 553 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 + ++ D+T FYAE GGQ D G I + + + G F+ H + L+ Sbjct: 554 RCGLLLDRTNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQVG 613 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + L +D R + H+ATHLL+ AL LG Q GS + P+ LRFDV P+T Sbjct: 614 DRVQLYVDKAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPLT 673 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RV 678 + +L+++E V + + Q+ PV + L Y D V + Sbjct: 674 TEQLRTVESYVQEAVGQDKPVYMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAQA 733 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHL 735 ++ + S LC GTH+ STG + L I+ + + GI R+ AITG+ +AR Sbjct: 734 LAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVKGITRLLAITGEQAQQAREVG 793 Query: 736 MGQDEKLKSLASFLKVSQGNVVGR------VEEIWE-----------------EYRKLQL 772 ++++ + L +++ + + E + LQ Sbjct: 794 QSLSQEVEVASERLSRGSRDLLEAHRLSKDIGRLIEFTESAVIPQWQRQEQQTTLKMLQR 853 Query: 773 IH--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A RKL+ + ++ ++ + +S L V+ L K+ S ++ Sbjct: 854 RANTAIRKLEKSQATEKSQELLKRHSEGPLIVDTVSAQSLSVLVKVVRQLCKQAPSMSVL 913 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L+ V + F A A + GG G P +AQ G + + Sbjct: 914 LLSPQPTGSVLCACQVAQGATPTFTAEAWALAVCSHM-GGKAWGSPVIAQGTG-HTADLE 971 Query: 887 QAIAGVASF 895 A+ ++ Sbjct: 972 AALRTARAY 980 >gi|324507432|gb|ADY43152.1| Alanyl-tRNA synthetase [Ascaris suum] Length = 693 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 224/696 (32%), Positives = 340/696 (48%), Gaps = 39/696 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R+ F+ FF H + SSS+IP DPTL+F N+GM FK IF G P Sbjct: 6 TANEVRSAFINFFANREHTYVHSSSVIPFEDPTLLFANAGMNQFKPIFLGTVDPSSELGR 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLTKE Sbjct: 66 LRRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCNWAWELLTKE 125 Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + +LY++ + D+E ++W GL +++ DNFW M + GPC Sbjct: 126 LGIPADQLYVSYFGGDEKAGLAPDDECRQIWLD-IGLPESRVLPFGMKDNFWEMGDVGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI FD+ + + +EIWNLVFMQ+ ++ LP ID G+G Sbjct: 185 GPCSEIHFDRVGNRDASA-LVNADDPMVVEIWNLVFMQYNREEGGVLRELPMRHIDCGLG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 LER+ V+Q KT+NYD D F + A + ++ + +RV+ DH+R Sbjct: 244 LERLVAVMQNKTSNYDTDAFTPIFDAIQASVCVRAYSGKVGAADSDGIDMAYRVVSDHIR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + ++DG P + GRGYVLRRI+RR + YA LG L+P + +G +PE Sbjct: 304 TLCVALSDGGRPDSTGRGYVLRRILRRGVRYANEKLGAPPGFFASLVPVVVRLLGDTFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPL 398 L + + + + E+ +F KTL RG L ++ L + + GD+A++LYDT+G P+ Sbjct: 364 LRKDPETVMDIINDEEAQFLKTLSRGRSLFQKAVAALESEAKQFPGDIAWRLYDTYGFPV 423 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQ 456 D+ Q + + +D+ +F Q ++ + A + + LK+ + Sbjct: 424 DLTQLMAEEK-QLSVDMDAFEQCRQKAVEMSSAGANKFRDTAELDVHGIAKLKKDGVPS- 481 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 S V A++++G V+ SG K V+ D Sbjct: 482 ------TDDSPKYDYSAVGPNDITAKYSFAKCEGQVLALLKEGTFVDSLYSGDKGAVILD 535 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +T FYAE GGQ+ DTG G + + G +V G + L+ I Sbjct: 536 RTNFYAEQGGQIYDTGVLTKIGDEGAEFEVSNVQMRGGYVVLVGSVEGNISIGDRLLQAI 595 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + R + NH+ TH+L+ AL +LG V Q GS + PD +RFD + +TSA+++ Sbjct: 596 DEERRSLIMKNHTGTHVLNFALRRVLG-DVEQKGSLVAPDKMRFDFSAKHALTSAQVREA 654 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670 E+ +I + V + +A G A+ Sbjct: 655 EELAQGMIETHAAVFAKDAPLAEAREVKGLRAVFDE 690 >gi|73973034|ref|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase like [Canis familiaris] Length = 985 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 274/960 (28%), Positives = 428/960 (44%), Gaps = 92/960 (9%) Query: 7 IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60 +R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ Sbjct: 42 VRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEMAGFRR 101 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFD 119 V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + Sbjct: 102 VANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYG 161 Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + + RL+++ + D E+ +W + G+ A ++ +NFW M +TGPCGP Sbjct: 162 IPKDRLWVSYFGGDPKAGLDPDLESRDIWLNL-GVHASHVLSFGPEENFWEMGDTGPCGP 220 Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 C+EI +D + + +E+WNLVF+Q ++ LP+ +DTGMGLE Sbjct: 221 CTEIHYDLAGRVGA---------PQLVELWNLVFIQHNRETDGSLQPLPQRHVDTGMGLE 271 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRSS 282 R+ VLQ + YD DLF L++A Q G +G + +RV+ DH+R+ Sbjct: 272 RLVAVLQGTPSTYDTDLFSPLLKAIHQGCGAPPYLGQVGAADKGRTDMAYRVVADHIRTL 331 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341 S IADG+ P G VLRRI+RRA+ ++ L + L+P + +G YPEL Sbjct: 332 SVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLQAPPGFLGSLVPVVVEILGDTYPELQ 391 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLPLD 399 + I + E+ F +L RG ++D L LG E+ +VA+ L GLPLD Sbjct: 392 KHSAQIASLVSEEEAAFLASLQRGRRIIDQTLRCLGPSELFPAEVAWSLSLSGNLGLPLD 451 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +++ +L +G+ A EE + R+R G + G Q G Sbjct: 452 LVELMLEEKGVQLDSAGLARLAQEEAKLRSRQAEPVQRQGLQLNV-----HALGELQRRG 506 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQT 518 + N + V + + G V GQ ++ D+T Sbjct: 507 ----VPPTDDSPKYNYSLRPSGGYEFNPCEAQVLQLYLEDGTAVASVGKGQHCGLLLDKT 562 Query: 519 PFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ D G + G + + + G F+ H V L+ + L +D Sbjct: 563 NFYAEQGGQASDRGYLVRVGQEDVLFPVARAQICGGFILHEAVAPEGLKVGDQVQLHVDE 622 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATHLL+ AL LG Q GS + P+ LRFDV P+T +L+++E Sbjct: 623 AWRLGCMEKHTATHLLNWALRQALGPGTEQRGSHLNPERLRFDVATQAPLTPEQLQAVEG 682 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGG 687 V + + Q+ V + L Y D V R + + Sbjct: 683 TVQEAVGQDEAVYMEEVALAHTAHVPGLRSLDEVYPDPVRVVSVGVPVARALDPASQAAL 742 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-- 745 S LC GTH+ TG + L I+ E + G R+ A+TG++A+ + + Sbjct: 743 QTSVELCCGTHLLRTGAVGDLVIIGERQLTKGTVRLLAVTGEQAQQAREVGQSLAQEVEA 802 Query: 746 --------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLIH--AKRKL 779 A L G ++ V+ E+ + LQ A RKL Sbjct: 803 ATERLSRGSQDVVEAHRLSKDMGRLIDAVDTAVMPQWQRRELQAALKVLQRRANTALRKL 862 Query: 780 QLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 +L ++ ++ + ++ L V+ L ++ ++L+ + Sbjct: 863 ELRQAAQKTQELLQRHSEGPLIVDTVAAESLSVLVKVVRQLCERAPCTSVLLLSPQPQGH 922 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + + F A A + GG G +AQ G + + A++ ++ Sbjct: 923 VLCACQVAQSAMPAFTAEAWALAVCSHM-GGKAWGSQVVAQGTGTTAD-LEAALSTARTY 980 >gi|260201682|ref|ZP_05769173.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T46] Length = 819 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 286/842 (33%), Positives = 428/842 (50%), Gaps = 67/842 (7%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146 M GNFSFG YFK AI+LAW LLT + LD R++ TVY +D+EA +LW++++GL Sbjct: 1 MAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60 Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206 A++I R DN+WSM GPCGP SEI++D+G E RY+E+WNLVFM Sbjct: 61 PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFM 119 Query: 207 QFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260 Q E+ + LP+ +IDTGMG+ER+A VLQ+ N Y+ DL + +I +V Sbjct: 120 QNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVA 179 Query: 261 GMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 Y + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR + A+LLG Sbjct: 180 ARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGI 239 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--H 375 ++ L+ + MG +YPEL+ I +E+ F +TL G L + V S Sbjct: 240 DAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTK 299 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 +L+G AF L+DT+G P+++ ++ GL +D I F + + EQR RA+A + Sbjct: 300 KSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAA 358 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 + + GAT+F G+D LR + + I Sbjct: 359 RKHAHADLSAYRELVDAGATEFTGFDELRS-----------------------QARILGI 395 Query: 496 VQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQI 543 G+ V A GQ+VE+V D+TP YAE+GGQ+ D G G + R + Sbjct: 396 FVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAV 455 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TDVQK A+ ++VH VE G +++ +D RR + HS TH++H AL +LG Sbjct: 456 TDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGP 515 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 + Q GS P LRFD P+T + +E+ N+ + + V T + A A G Sbjct: 516 NAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMG 575 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G Y D VRVV + GG S LCGGTHVS+T +I + I+ ESSI +G+RR+ Sbjct: 576 AIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRV 631 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---- 779 EA G + HL + + LAS LKV V RV + E R + + ++ Sbjct: 632 EAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASAR 691 Query: 780 -QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKK 835 +I +V ++ +S + + +L+S++ ++ K+ S ++ L+ + + Sbjct: 692 AAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQT 751 Query: 836 ASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + D A DL + A + G GGG+ +AQ G N D A+ V S Sbjct: 752 VPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRS 810 Query: 895 FL 896 + Sbjct: 811 EI 812 >gi|13357929|ref|NP_078203.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762259|ref|YP_001752452.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920314|ref|ZP_02931660.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508708|ref|ZP_02958194.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|81624421|sp|Q9PQC2|SYA_UREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830281|sp|B1AJ08|SYA_UREP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|11271362|pir||D82899 alanyl-tRNA synthetase UU369 [imported] - Ureaplasma urealyticum gi|6899351|gb|AAF30778.1|AE002134_2 alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827836|gb|ACA33098.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902731|gb|EDT49020.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675631|gb|EDT87536.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 906 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 272/945 (28%), Positives = 458/945 (48%), Gaps = 97/945 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 5 STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D Sbjct: 65 NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++L++TV+++D+ W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 121 KKLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGER 178 Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Sbjct: 179 FDPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286 Q+ N+D D+F + ++ EQ + KY+ N ++VI DH+R++ F I Sbjct: 239 QDVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345 ADG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKT 358 Query: 346 LI--EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L + L E + F KTL GL + + + + + L+ ++ FKL DT+G P+++++ Sbjct: 359 LTKIKMILNKEVQLFEKTLQLGLNIFENSIRN----QELDKEITFKLVDTYGFPIELIK- 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +C + +D+ +F+ + + ++A+ L ++ SL + + F Y++ Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 R ++ + + + + + + + VVFD T FYA Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ DTG I + + + DV K VHH + ++L I+ Q+R+ + Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEHVILQINEQDRKSI 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N+++ Sbjct: 567 TANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700 N V M+ ++A A GAAA Y ++RV+ + S LCGGTH Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741 T EI + IV +S AG RI +TG +L D K Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDHK 740 Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793 L L + +S + + + E+ + ++ K+ + + D+ Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQNAKQAIIDIKNTFNTQL 800 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851 N H+ D+K + + ++ L + Q + + + + K L+ + E ++ N Sbjct: 801 TNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFATTNQIN 859 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + G GGG+P+ Q G K D+ + V ++ Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903 >gi|281307084|pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa gi|281307085|pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Glysa gi|281307086|pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Sersa gi|281307087|pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Amppcp gi|281307088|pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Amppcp, Ala-Amp And Pcp Length = 441 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 234/441 (53%), Positives = 308/441 (69%), Gaps = 14/441 (3%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT K F Sbjct: 62 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 181 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DTGMGLE Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 241 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 300 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 360 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 418 Query: 412 GIDIISFNQALEEQRSRARAH 432 +D F A+EEQR RAR Sbjct: 419 -VDEAGFEAAMEEQRRRAREA 438 >gi|186701671|ref|ZP_02971369.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700919|gb|EDU19201.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 906 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 272/945 (28%), Positives = 459/945 (48%), Gaps = 97/945 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 5 STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D Sbjct: 65 NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 ++L++TV+++D+ W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 121 KKLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGER 178 Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Sbjct: 179 FDPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286 Q+ N+D D+F + ++ EQ + KY+ N ++VI DH+R++ F I Sbjct: 239 QDVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345 ADG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKT 358 Query: 346 LI--EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L + L E + F KTL GL + + + + + L+ ++ FKL DT+G P+++++ Sbjct: 359 LTKIKMILNKEVQLFEKTLQLGLNIFENSIRN----QELDKEITFKLVDTYGFPIELIK- 413 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +C + +D+ +F+ + + ++A+ L ++ SL + + F Y++ Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 R ++ + + + + + + + VVFD T FYA Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ DTG I + + + DV K VHH + ++L I+ Q+R+ + Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEHVILQINEQDRKSI 566 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N+++ Sbjct: 567 TANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700 N V M+ ++A A GAAA Y ++RV+ + S LCGGTH Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741 T EI + IV +S AG RI +TG +L D K Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDHK 740 Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793 L L + +S + + + E+ + ++ K+ + + D+ Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQNAKQAIIDIKNTFNTQL 800 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851 N H+ D+K + + ++ L + Q + + + + K L+ + E +++ N Sbjct: 801 TNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFATINQIN 859 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + G GGG+P+ Q G K D+ + V ++ Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903 >gi|313678597|ref|YP_004056337.1| alanine--tRNA ligase [Mycoplasma bovis PG45] gi|312950312|gb|ADR24907.1| alanine--tRNA ligase [Mycoplasma bovis PG45] Length = 880 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 283/938 (30%), Positives = 457/938 (48%), Gaps = 103/938 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF+ H ++ S SLIP NDP+L++ NSG+ KN F+G++ P Sbjct: 1 MKKLTSTEIRQKWLDFFESKNHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPA 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +T QK +R ND++NVG T+RHHTFFEMLGNFS G YFK+ AI A + L Sbjct: 61 FRLTNSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++D +LY T Y+ED EA W + +G+ +I T + NFW + +GPCGPC+EIF+D Sbjct: 117 EMDFEKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYD 174 Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +GE L + E +RYIEIWN+VF QF + L + +IDTG GLER+A+ Sbjct: 175 RGEKYDSRGIDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLAS 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSF 284 ++Q+ NYD DLF ++I+ E+ + KY N N ++I DH+R+ Sbjct: 235 IMQDVPTNYDSDLFINIIREIEKYSRYKYIIENYFVKDEHQSEINTNFKIIADHIRTVVN 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG +N GRGY++RR++RR+ LG + + L+ + + Y E Sbjct: 295 AIADGAKVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYDEKD--- 351 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + + ++ E+ F KT+++G +LL+ L + ++++ +G VAF L +T+G P+++ +I Sbjct: 352 --VIDAIKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEI 407 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLL 463 L +G +D+ +F + + S G + +K+ SL F+GY L Sbjct: 408 LHQKG-IRVDMEAFE----LAKEKHALASKGGKATGMDKVINSLALIDKKMDNFVGYSEL 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 SS V + + VE +G V+ + TPFYA Sbjct: 463 -----------------------SASSKVLKLFDEENEVESFETG--GYVLLETTPFYAT 497 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ D G I +++I DV K F +H G + + +D R L Sbjct: 498 SGGQRHDKGFIIQGENKIKIIDVFKDK---FGNHIHFVEGKMNNYEPVSSFVDPNIRIGL 554 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHS THLL AL +LGSH+ Q GS + L FD + + ++K+IED V I Sbjct: 555 ERNHSGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAIEDLVRSYI 614 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +++ + A GA L R V V G +S LCGGTH+S+T Sbjct: 615 TKSIDREYITTTVDKAREMGAIMTLEEGEYMDPRAVRVVRF--GDITSDLCGGTHLSNTS 672 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLK-SLASFLKVSQG------- 754 ++ I + +AG+ RI AI+ + +L ++KL LA+ +K + Sbjct: 673 KLESFKITNVEKKQAGVFRIRAISSIKLVNEYLSEVNKKLNEELATIIKKIKELKNDYVA 732 Query: 755 ---------------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799 ++ R++E+ E Y++L + L+ + E + KI + + + Sbjct: 733 PVINENEPDIETLNLSINKRIDELREVYKQLLKESSN--LEFDYETVKFDKINNYDVYIN 790 Query: 800 IISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 + +VD+ +K + +++ K QSG + ++G EK+ + I +A + + Sbjct: 791 L--DVDASSVKLIAASIRDKFQSGKTVAIIGSKNEKELLLAIA-----TRAIDANKMFKK 843 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + L G GGG P +A + + + +L Sbjct: 844 LSSELN-GRGGGAPILAMGKMNYSENIE---SLIKDYL 877 >gi|294660251|ref|NP_852904.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)] gi|83305848|sp|Q7NBY8|SYA_MYCGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|284811906|gb|AAP56472.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)] gi|284930365|gb|ADC30304.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)] Length = 902 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 258/935 (27%), Positives = 435/935 (46%), Gaps = 96/935 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR +L+FF+ HE++ S SL+P NDP+L++ N+G+ K F+G+E P+ + Sbjct: 6 SGSQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLA 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 Q+C+RA ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ ++LLTK + L++ Sbjct: 66 NSQRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYIT+Y++D +AF W G++ IIR NFW + +GPCGP +EI++D+GE Sbjct: 122 DKLYITIYEDDNDAFNYWVGQ-GINPHHIIRCDRKRNFWDLG-SGPCGPSTEIYYDRGEK 179 Query: 183 IPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E +RYIE+WN+VF QF L + +IDTG LER A +L Sbjct: 180 YDPNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELLRKNIDTGASLERFACIL 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286 Q+ NYD DL+ +I+ E+ T KY ++ + RVI DHL+ F I Sbjct: 240 QDVPTNYDTDLYLPIIRTIEKHTNHKYVVDHYFSKDQSEQDVLRAFRVIADHLKCGVFAI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+LP + R Y++R+++RRA YA+ L ++ + + + LI K + Sbjct: 300 ADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNKEI 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + + + +E F KTLD G + + + + FKL +T+G PLD+++++ Sbjct: 360 VIQAITNEANNFTKTLDYGFEIFNE----AKTTNNITAETIFKLVETYGFPLDLIKELSA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 + +D+ F + ++ + ++A++ +G + +L + ++F YD Sbjct: 416 EAKIK-LDLDGFEELFKKHQEISKANNGEVGLKKQNE---NLLKFKTPSKF-FYD----- 465 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAG 525 N + + V AI V++ G VF+ TP YA +G Sbjct: 466 ------------------KNNIKTKVVAIFDDKFNPVDQIEVG-SGWAVFESTPIYATSG 506 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G + G + D KA H ++ + L D R+ + Sbjct: 507 GQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLH-HFKKASFWLNEKVELMHDENWRKLVRK 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHS H+LH L + + Q+G+ + D + +T +L IE + +IA Sbjct: 566 NHSLEHILHATLKNTISETIKQSGAFKSAAKATLDFNYPTRLTDEDLDKIETKMRQVIAD 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV ++ E + A A +Y + ++ G +S LCGGTHV +T EI Sbjct: 626 KIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIK---IGDYSVELCGGTHVDNTKEI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKSLASFL--------------- 749 +I + S+ AG RIE ++ ++L+ + ++K + Sbjct: 683 EECFITNLYSLGAGRWRIEIMSSYETIYNYLVDKQNEIKQEKDHMFNELGNYDLTHYLDF 742 Query: 750 --KVSQGNVVGRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--N 795 K+ N+ + E+I EEY+ ++L K+K + + + ++ Sbjct: 743 SKKLHSFNLPNSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIKKLALDNLEHK 802 Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855 + + + K L L + + + S + K + LI + ++ + NA L Sbjct: 803 IVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKS-DNKINYLIGI-KNATYKLNAKLL 860 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGG---PNGNKADQ 887 + G GGG+ + AQ G + K Sbjct: 861 IDKV-NAMFGAKGGGKQNFAQGGFSTDKDVGKLKA 894 >gi|148691494|gb|EDL23441.1| alanyl-tRNA synthetase like [Mus musculus] Length = 984 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 273/968 (28%), Positives = 432/968 (44%), Gaps = 100/968 (10%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+++ P DP+L+F N+GM FK IF G P + Sbjct: 35 AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 95 RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D E +W + G+ A +++ +NFW M +TGPC Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 214 GPCTEIHYDL---------AGGVGSPQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q G +RV+ DH+R Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ L + L+P + +GSAYPE Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384 Query: 340 LIQAKLLIEETL----RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDT 393 L + + + + ++ F +L RG ++D + LG ++ +VA+ L Sbjct: 385 LEKNSVKVLIEIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGN 444 Query: 394 HGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 G+PLD+++ +L +G+ + Q + R++ L + Sbjct: 445 LGIPLDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQ 504 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQK 510 T + V + + G V +GQ+ Sbjct: 505 GIPT-----------TDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQR 553 Query: 511 VEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ D G + + G F+ H + L+ Sbjct: 554 CGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGD 613 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + L +D R + H+ATHLL AL LG Q GS + P+ LRFDV +T+ Sbjct: 614 QVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTT 673 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------- 680 +L+++E V +++ Q+ PV + L Y D VRVVS Sbjct: 674 EQLRTVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHAL 733 Query: 681 -VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLM 736 + S LC GTH+ STG + L I+ E + GI R+ AITG+ +AR Sbjct: 734 GPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQ 793 Query: 737 GQDEKLKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLI 773 +++++ + L ++ R+ +E+ + LQ Sbjct: 794 SLSQEVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRR 853 Query: 774 H--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A RKL+ ++ ++ + +S L V+ L K+ S ++L Sbjct: 854 ANTAIRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLL 913 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + V +D F A A +GG G R +AQ G + + Sbjct: 914 LSPQPTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTG-HTADLEA 971 Query: 888 AIAGVASF 895 A+ ++ Sbjct: 972 ALGTARAY 979 >gi|221057404|ref|XP_002261210.1| alanine--tRNA ligase [Plasmodium knowlesi strain H] gi|194247215|emb|CAQ40615.1| alanine--tRNA ligase, putative [Plasmodium knowlesi strain H] Length = 1180 Score = 582 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 267/1006 (26%), Positives = 444/1006 (44%), Gaps = 131/1006 (13%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + +R F+ +F++ H ++ S+S+IP ND TL+FTN+GM FK IF GQ Sbjct: 192 SAEEVRGRFINYFKEKKHTVMESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKNSDLGK 251 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +I AWDLLT Sbjct: 252 LKRAVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNV 311 Query: 118 FDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + +D RLY+T + DE EA ++W K L +I+ +NFW MAETGP Sbjct: 312 YKIDPNRLYVTYFGGDEKLPGCPEDFEAKRIWLKY--LDESRILPFGMKENFWEMAETGP 369 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPCSEI +D+ + + +EIWN+VFMQ+ + K+ LP IDTGM Sbjct: 370 CGPCSEIHYDRIGGRDASS-LVNMDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGM 428 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVDH 278 GLER+ ++LQ +NYD DLF + + +++ + G +RV+ DH Sbjct: 429 GLERITSILQNVESNYDTDLFMPIFKQIKEIFNHLPEYGGKVNEEDVGRIDYAYRVVSDH 488 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMGS 335 +R + I+DG LP NEGR YV+RRI+RRA+ + + E L+ ++C + Sbjct: 489 IRCVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVESNVLWFYKLVDSVCQILKK 548 Query: 336 AYPE--LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKL 390 + + I+ ++ E+ F KTL++G+ + ++ D+I NG AF L Sbjct: 549 CFTDLQDENRVNYIKSIIKQEEMVFNKTLEKGVDQFNKIIKKSNNAGGDKIFNGKDAFDL 608 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 Y ++G P+D++Q + + + F ++ + + + + Sbjct: 609 YTSYGFPIDLIQIMCEEKNFK---LNMFEFNELFKKHQLVSDTNNFKINKFFDLPVEKAH 665 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---S 507 + + G + + + TN + I ++ Sbjct: 666 ELK--EKHGVEATEDHHKYEWNNDDRRNDMKKVDTN-----IVVIYDGENFIDSIKTPND 718 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 +K ++ +T FY E GGQ+ DTG ++ Q+ +V +K +H I++ G + Sbjct: 719 DKKYALILKETNFYYENGGQIYDTGVIENGQMKFQVLNV-QKMNDYVLHIGILKEGKIEK 777 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV---------------------- 605 S+ +++ R+ ++ NH+ATHLL+ + +L +V Sbjct: 778 NDSVHTYVNFDRRKLVACNHTATHLLNFVIKKVLTEYVVNGEGQMKNGDLVQKKNEKEET 837 Query: 606 --------SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 Q GS + + LRFD + + I+ + IE VND+I Q L V R M+ + Sbjct: 838 GMNSIFNCDQKGSLVDDEKLRFDFSFFQNISDDLVSKIESQVNDLIKQELSVSVRTMDLK 897 Query: 658 DAIA-SGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEI 705 ++ G A+ Y D V VV ++ + + S LCGGTH+++T I Sbjct: 898 ESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYMCSIELCGGTHIANTKFI 957 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG----------- 754 I SE SI GI RI A+T ++A D + Sbjct: 958 KKFIITSEESIGKGIYRINAVTNRKAEEVEAKFDNLYAKYKHIFEDPNEGKLAEVQTYKR 1017 Query: 755 --------------NVVGRVEE----IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796 ++ ++E+ I E+ + +Q K +D + + V Sbjct: 1018 ILKEDKFLPYIRKNEILNKLEKIEKNIIEKTKNMQKELFN-KATAIGKDYALEDKSGVLV 1076 Query: 797 MSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNA 852 + + + K L+ + + K + + ++K + + +D L A Sbjct: 1077 DVKLFDALCGNQKVLEKIAQSYCKHNKLCSYFFI--IDDEKNTYCVFEMKDSLKGITIQA 1134 Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA---DQAIAGVASF 895 + + + G GGG+ + A G + A+ + + Sbjct: 1135 DTFMKEIMQSVEGHSGGGK-NKAFGSAAKGKGVIIKELALEALKKY 1179 >gi|300794887|ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus] Length = 983 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 272/951 (28%), Positives = 418/951 (43%), Gaps = 91/951 (9%) Query: 4 VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 +++R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P Sbjct: 37 AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAG 96 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116 ++ V QKCVRAGG+H+DL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 97 FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 156 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RL+++ + D E+ +W + G+ A +++ +NFW M +TGP Sbjct: 157 VYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTGP 215 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D + +E+WNLVFMQ ++ LP+ +DTGM Sbjct: 216 CGPCTEIHYDL---------AGGAGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 266 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHL 279 GLER+ VLQ + + YD DLF L+ A Q G +RV+ DH+ Sbjct: 267 GLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADHI 326 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ S IADG+ P G VLRRI+RRA+ ++ L + L+P + +G AYP Sbjct: 327 RTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 386 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGL 396 EL ++ I + ++ F +L RG +++ L LG ++ +VA+ L GL Sbjct: 387 ELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 446 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+++ +L +G+ A EE + RA G + G Q Sbjct: 447 PLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNV-----HALGELQ 501 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVF 515 G Q + V + + G V GQ ++ Sbjct: 502 RRG----VPPTDDSPKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQHCGLLL 557 Query: 516 DQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ D G + + + + G F+ H +V LR + L Sbjct: 558 DKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQVQLH 617 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D R H+A HLL+ AL +LG Q GS + P+ LRFDV P+T +L++ Sbjct: 618 VDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRA 677 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYE 684 +E V + ++ V + L Y D VRV + + Sbjct: 678 VEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQ 737 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 S LC GTH+ TG I L I+ E + GI R+ A+ G++A+ + Sbjct: 738 AALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQE 797 Query: 745 L----------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLIH--AK 776 + A L G + V+ E+ + LQ A Sbjct: 798 VEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTAV 857 Query: 777 RKLQLNVEDLSCHKIA----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 RKL++ ++ + + +S L V+ L + ++L+ Sbjct: 858 RKLEMGQAAQKTQELLQRHMEGPLIVDTVSTESLSMLVKVVRQLCTQAPGTSVLLLSPQP 917 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 K V + F A A +GG G R +AQ G + Sbjct: 918 LGKVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 967 >gi|156054306|ref|XP_001593079.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980] gi|154703781|gb|EDO03520.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980 UF-70] Length = 936 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 286/965 (29%), Positives = 448/965 (46%), Gaps = 120/965 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-----KPVYQAV 61 +R FL FF+K+ H ++PSSS++P NDPTL+FTN+GM FK IF G + Sbjct: 15 VRKEFLNFFEKHAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDDMAQLKRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK DLD+VG+ + HH+ AI +AW+LLTK + LD Sbjct: 75 VDTQK---------DLDDVGKDSYHHS----------------DAIAMAWELLTKVYGLD 109 Query: 122 QRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW K +G+ D I+ DNFW M ETGPCGPCS Sbjct: 110 PDRLYVTYFEGDSENNVPADTEAKELWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCS 168 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN+VF+QF++Q + LP IDTGMG ER+ Sbjct: 169 EIHYDRIGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERL 228 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSF 284 +VLQ+K++NYD D+F L ++V G +RVI DH+R +F Sbjct: 229 VSVLQDKSSNYDTDVFSPLFAKIQEVTQARPYTDKYGKDDTDGIDTAYRVIADHIRLLTF 288 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I+DG +P NEGRGYV+RR++RR YAR E +LPAL +MG +PE+++ Sbjct: 289 AISDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVK 348 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400 + ++E L E+E F +TLDRG + + + K L+G ++LYDT G P D+ Sbjct: 349 KQQDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDL 408 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RG + + +E + +AR S + + + Sbjct: 409 TKIMAEERG-----LETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQI--------- 454 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 + + V+ I ++ S + ++ D+ Sbjct: 455 ------AELDNIGIARTNDDAKFSKGDSTGKVQLIYDGKSFLKSTADLPSDKPFGILLDK 508 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ+ DTG I DG+ + G VH+ ++ G + ++ D Sbjct: 509 TNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYGGYIVHNGYMDYGNFKAGDEVICEYDE 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R+ + NH+ TH+L+HAL LG ++Q GS + + LRFD +H +T ELK IED Sbjct: 569 LRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHKAQVTLPELKKIED 628 Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 + N I QN + ++ + G A+ G Y + VRVVSV + Sbjct: 629 SSNSYIKQNCKIYSKDVDLDTAKAIEGVRAVFGETYPNPVRVVSVGVEIDVLLAEPKNPE 688 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------------ 733 S CGGTHV TG I L IV ES I GIRRI A TG A Sbjct: 689 WRKVSVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAHEIQRVASEFGKRI 748 Query: 734 -------HLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 H + +++++K+ + L +++ ++ + ++ ++ Q K + + Sbjct: 749 AALDAMPHGVEKEQEVKATQNDLNHLTISVLTKEDLKKKFTKVQKDVLDEQKKKQKAESK 808 Query: 781 LNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 ++ ++ + +++ + +SK + VM+ + K + + L G S + Sbjct: 809 TALDTVTAHFADPKNKDSIAYIAQLPISANSKAIAEVMNHFKSKAKEKTVYLFGGSASEG 868 Query: 836 ASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 A V + V T+ +A A ++V+GG GG P G N +K D A+A Sbjct: 869 AVVHGVYVGTDAASKGVSAEQWAAAVSEVIGGRSGGKEPTR-TGQGTNADKIDDAVAVAE 927 Query: 894 SFLKK 898 + + Sbjct: 928 KWFAE 932 >gi|281307089|pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307090|pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307091|pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307092|pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307093|pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Glysa gi|281307094|pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Glysa gi|281307095|pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Sersa gi|281307096|pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Sersa Length = 441 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 233/441 (52%), Positives = 307/441 (69%), Gaps = 14/441 (3%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT K F Sbjct: 62 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 181 Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EIF+D G+ I GG PGS E+G+RYIEIWN+VFMQF +Q LPK S+DT MGLE Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE 241 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A VLQ +NYDIDLF+ LIQA +VTG + + RVI DH+RS +FLIADG++ Sbjct: 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L Sbjct: 300 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 360 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 418 Query: 412 GIDIISFNQALEEQRSRARAH 432 +D F A+EEQR RAR Sbjct: 419 -VDEAGFEAAMEEQRRRAREA 438 >gi|260187569|ref|ZP_05765043.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A] Length = 819 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 284/842 (33%), Positives = 427/842 (50%), Gaps = 67/842 (7%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146 M NFSFG YFK AI+LAW LLT + LD R++ TVY +D+EA +LW++++GL Sbjct: 1 MGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60 Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206 A++I R DN+WSM GPCGP SEI++D+G E RY+E+WNLVFM Sbjct: 61 PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFM 119 Query: 207 QFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260 Q E+ + LP+ +IDTGMG+ER+A VLQ+ N Y+ DL + ++ +V Sbjct: 120 QNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTVARVA 179 Query: 261 GMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 Y + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR + A+LLG Sbjct: 180 ARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGI 239 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--H 375 ++ L+ + MG +YPEL+ I +E+ F +TL G L + V S Sbjct: 240 DAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTK 299 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 +L+G AF L+DT+G P+++ ++ GL +D I F + + EQR RA+A + Sbjct: 300 KSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAA 358 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 + + GAT+F G+D LR + + I Sbjct: 359 RKHAHADLSAYRELVDAGATEFTGFDELRS-----------------------QARILGI 395 Query: 496 VQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQI 543 G+ V A GQ+VE+V D+TP YAE+GGQ+ D G G + R + Sbjct: 396 FVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAV 455 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TDVQK A+ ++VH VE G +++ +D RR + HS TH++H AL +LG Sbjct: 456 TDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGP 515 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 + Q GS P LRFD P+T + +E+ N+ + + V T + A A G Sbjct: 516 NAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMG 575 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G Y D VRVV + GG S LCGGTHVS+T +I + I+ ESSI +G+RR+ Sbjct: 576 AIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRV 631 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-- 781 EA G + HL + + LAS LKV V RV + E R + + ++ Sbjct: 632 EAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASVR 691 Query: 782 ---NVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKK 835 +I +V ++ +S + + +L+S++ ++ K+ S ++ L+ + + Sbjct: 692 AAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQT 751 Query: 836 ASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + D A DL + A + G GGG+ +AQ G N D A+ V S Sbjct: 752 VPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRS 810 Query: 895 FL 896 + Sbjct: 811 EI 812 >gi|71033767|ref|XP_766525.1| alanyl-tRNA synthetase [Theileria parva strain Muguga] gi|68353482|gb|EAN34242.1| alanyl-tRNA synthetase, putative [Theileria parva] Length = 1011 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 283/950 (29%), Positives = 452/950 (47%), Gaps = 112/950 (11%) Query: 2 SNVSS------IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK 55 + +R F+++F H PSSS++P NDPTL+F N+GM FK+I G+ Sbjct: 53 MSTDDKVTGDWVRKQFIDYFVSKNHVHWPSSSVLPHNDPTLLFVNAGMNQFKDIIMGKSD 112 Query: 56 PVY-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110 + V QKC+RAGGKHNDL++VG+ H T+FEMLGN+SFG YFK AI A Sbjct: 113 ENSEFGKLKMVCNSQKCIRAGGKHNDLEDVGQDCYHQTYFEMLGNWSFGAYFKPEAISYA 172 Query: 111 WDLLTKEFDLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164 WDLLT + LD RLY+T + D+ E ++W K L +++I+ + DNFW MA Sbjct: 173 WDLLTNVYKLDPSRLYVTYFGGDDSCEPDHETREIWLKF--LPSNRILPFGSKDNFWEMA 230 Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 +TGPCGPC+EI +D + + +E+WN+VFMQ+ + LPK + Sbjct: 231 DTGPCGPCTEIHYDHIGGRDASS-LVNADDPNVVELWNIVFMQYNRSRNGVLERLPKGCV 289 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNN---IVNHRVIVDHL 279 DTGMGLER+ +VL +NYD DL +I ++ Y+G N V +RV+ DH+ Sbjct: 290 DTGMGLERLCSVLNNTNSNYDTDLLNDVILYISELLPELESYKGGNSPLDVAYRVVSDHI 349 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL-GYTEPLMMHLLPALCTEMGSAYP 338 R S I+D + P+N+GRGYVLRRI+RRA+ Y R EP + L+ ++ +G AYP Sbjct: 350 RCLSVAISDRVYPSNDGRGYVLRRILRRAVRYCRDYFNTREPFLHRLVRSVSKLLGHAYP 409 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 L+ ++ IE + E+ F +TLD+G+ +++ + +++NG AF LY ++G PL Sbjct: 410 NLVTERVNIESVVFDEERLFLQTLDKGVEKFKKMVAK-SEVKVINGQDAFLLYQSYGFPL 468 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT---EKIWFSLKEKYGAT 455 D+ + G G+D+I + L+ + ++ A + +++ SL T Sbjct: 469 DLTMLMARELG-IGVDVIGYYTELKLHQQKSEARIYTDFNSVESRCDRLLKSLSADRINT 527 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAV--SGQKVE 512 +L+ + D K+ D V + + +IV I++E S V Sbjct: 528 ------ILQMCNNVYTDDKLKYDWDSSDPVRKVFKAKLLSIVTADSILKELEYDSDDLVC 581 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +V D+TPFYAE GGQ+ DTG L++ V K + +F E G+LR Sbjct: 582 LVTDRTPFYAEGGGQIYDTGYI----NDLEVLRVYKLSGLVFHFCLADESGLLRCGDECE 637 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L +DY R +++ NH+ATH+L+ L IL Q GS + + L+FD ++ + + + Sbjct: 638 LKVDYHRRVKVASNHTATHILNFVLRDILEESSYQRGSQLDEEKLKFDYSYGQQLPDNLI 697 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGG 687 + +E + + + P+ T + + A+ G A KY + VRVV+V E G Sbjct: 698 RQVEQRMMEFVRSGAPLRTTEIEYKKALEIPGIRANFDEKYPEVVRVVNVQMGSEDFSGE 757 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---HLMGQDEKLKS 744 S+ +CGGTH+++T I + +V E I G+RR+ +T + R L+ ++L Sbjct: 758 HTSTEVCGGTHLTNTKTIQDVAVVGEEGISKGVRRLTIVTNDQCRRSRIDLLNYYQRLGD 817 Query: 745 LASFLK--------------------------------------VSQGNVVGRVEEIWEE 766 L LK +S+ N++ + EE+ + Sbjct: 818 LEKSLKPINFTKDDTREASENASENMSKLTALRGEVEVHKMLPLLSKRNLMKKFEELIDL 877 Query: 767 Y----RKLQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + Q AK K VE L K + F+ L++ +D L+ Sbjct: 878 QVSAGKAHQKRLANIAKIKAVEVVEKLQSQKYDGMEFIEKTSEH--PAVLRAAVDDLEGD 935 Query: 820 IQSG-------------IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++S + ++ + A +L Sbjct: 936 LKSLNVFVQTVSKTFPQLAVVASSMGNNAVCCRVNSPNASYSALKAANLI 985 >gi|84998104|ref|XP_953773.1| alanyl-tRNA synthetase [Theileria annulata] gi|65304770|emb|CAI73095.1| alanyl-tRNA synthetase, putative [Theileria annulata] Length = 1024 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 291/952 (30%), Positives = 464/952 (48%), Gaps = 107/952 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R F+++F H PSSS++P NDPTL+F N+GM FK+I G+ + V Sbjct: 82 VRKQFIDYFVSKNHVHWPSSSVLPNNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 141 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ H T+FEMLGN+SFG YFKE AI AWDLLT + LD Sbjct: 142 CNSQKCIRAGGKHNDLDDVGQDCYHQTYFEMLGNWSFGAYFKEEAISYAWDLLTNVYKLD 201 Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY+T + D E ++W K + A +I+ + DNFW MA+TGPCGPC+EI Sbjct: 202 PNRLYVTYFGGDKSCEVDNETREIWLKF--MPASRILPFGSKDNFWEMADTGPCGPCTEI 259 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + + +EIWN+VFMQ+ + LPK +DTGMGLER+ + Sbjct: 260 HYDHIGGRDAST-LVNADDPNVVEIWNIVFMQYNRGENGVLERLPKGCVDTGMGLERLCS 318 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNN---IVNHRVIVDHLRSSSFLIADGI 290 VL +NY+ DL +IQ ++ Y+G N V +RV+ DH+R S I+D + Sbjct: 319 VLNNTNSNYNTDLLNDIIQYIRELLPGFESYKGGNTPLDVAYRVVSDHVRCLSVAISDKV 378 Query: 291 LPANEGRGYVLRRIMRRAMCYARLL-GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 P+NEGRGYVLRRI+RRA+ Y R EP + L+P++ +G+AYP L+ + IE Sbjct: 379 YPSNEGRGYVLRRILRRAVRYCRDYFNTKEPFLYKLVPSVTKLLGNAYPNLLTEQANIES 438 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E++ F +TLD+G+ ++S ++++NG AF LY ++G PLD+ + G Sbjct: 439 IVLDEEKLFLQTLDKGVEKFKKMVSK-SGNKVINGPDAFLLYQSYGFPLDLTMLMARELG 497 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTT---EKIWFSLKEKYGATQFIGYDLLRGS 466 + +D+ + L+ + ++ + + +K+ SL T +L+ Sbjct: 498 IT-VDVDGYYSELKLHQQKSESRVYTDLNSLESRCDKLLKSLSADRINT------ILKMC 550 Query: 467 KFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAV--SGQKVEVVFDQTPFYAE 523 + D K+ D V + + + V ++ E V +V D+TPFYAE Sbjct: 551 NNVYTDDKLKYDWDSSDPVAKVYKAKLVSTVTLDSVMSELQCDDDDLVCLVMDRTPFYAE 610 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ DTG L++ V K + +F + G+LR L +DY+ R ++ Sbjct: 611 GGGQIYDTGYI----NDLEVLRVYKMSGLVFHFCLSKKSGVLRCGDEFELKVDYERRVRV 666 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH++TH+L+ L +L Q GS + + L+FD +++ + ++ IED + D + Sbjct: 667 ASNHTSTHILNFVLRDMLDESSYQRGSQLDEEKLKFDYCYNQQLPEDLIRRIEDRMMDFV 726 Query: 644 AQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTH 698 P+ TR + ++A+ G A KY + VRVV+V E G S+ +CGGTH Sbjct: 727 RSEAPLRTREIEYKNALEIPGIRANFDEKYPEVVRVVNVQLGSEDFSGEHTSTEVCGGTH 786 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---HLMGQDEKLKSLASFLK----- 750 +++T I + +V E I G+RR+ +T ++ R L+ +++L+ L LK Sbjct: 787 LTNTKTIQDVAVVGEEGISKGVRRLTLVTNEQCRKSKADLLHYEKRLEELEKNLKPINFT 846 Query: 751 ---------------------------------VSQGNVVGRVEEIWEEY----RKLQLI 773 + + N++ + E++ ++ + Q Sbjct: 847 KDDTREASLNAAENMTRLTALRGEAEVHKMLPLLGKRNLMKKFEQLIDQQVSAGKAHQKR 906 Query: 774 H---AKRKLQLNVEDLSCHKIADVNF----------MSHIISEV--DSKELKSVMDALQK 818 AK K VE L K +V F + + ++ D K L + + K Sbjct: 907 LANIAKMKAVEVVEKLQSQKYDEVEFTEKTSEHPAVLRASVDDLEGDLKSLNVFVQTISK 966 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 I +L + + ++A+ A L A L G G Sbjct: 967 TFPQ-IAVLASSVG---INAVCCRVNSPNASYSALKAANLIATQLNLTNGTG 1014 >gi|262341353|ref|YP_003284208.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272690|gb|ACY40598.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 887 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 295/927 (31%), Positives = 472/927 (50%), Gaps = 78/927 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 SIR TFL FF+K H+++PS + NDP+L F N+GM PFK+ F G +P Y + Sbjct: 1 MKYKSIRDTFLGFFKKKEHKVIPSFPIHSKNDPSLFFINAGMNPFKDYFLGHIQPDYSRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 VQKC+R GKHNDL++VG N HHT FEMLGN+SFG Y ++ I+ AW+LL + +++ Sbjct: 61 VNVQKCLRVTGKHNDLEHVGYDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLIQVYNIP 120 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 ++ +YI+V+ D+ E FK WK + +S + I+ +NFW M TGPCGPCS Sbjct: 121 KKNIYISVFIGDKKEGLSMDYETFKYWKTL--ISEENILFFGKKENFWEMGLTGPCGPCS 178 Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D G +++ + IEIWNLVF++F +++ + L K +DTGMG Sbjct: 179 EIHIDLRNEKEKQMLSGKHLVNKKHPKVIEIWNLVFIEFLRKSDGKLEKLTKKHVDTGMG 238 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 LER+ +LQEK ++Y+ D+F +IQ ++ G Y + + V+ +I DHLR+ F I+ Sbjct: 239 LERLCMILQEKFSSYETDIFFPIIQNIKESLGKIYKEDFHQKVSIHIIADHLRAIVFSIS 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P+N G GYV+RRI+RRA+ YA R L EP + + +L EM S +PEL++ K Sbjct: 299 DGVFPSNNGAGYVIRRILRRAIIYATRFLYKKEPFIYQFVDSLVKEMKSYFPELMEKKEY 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ ++ E+ F K +++G + ++ ++I++G FKLYDT+G P+ + + Sbjct: 359 IKNVIQEEELSFLKVIEKGNHKIQYIIEKAKKQNEKIIDGTTIFKLYDTYGYPIK-LSKM 417 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK---YGATQFIGYD 461 L + ID F++ L EQ++R+ +K W + + F+GYD Sbjct: 418 LVEKNNLLIDEKLFHEKLLEQKNRS----KKENHTIEKKDWIEVHNHQFIHENVNFVGYD 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 +++ + + RKV + E+VF +TPFY Sbjct: 474 MIKCDVLILKYRKVE--------------------------NKLEKTHYYELVFSKTPFY 507 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQLGDTG + + I + +K+ I ++ S +D R Sbjct: 508 PEGGGQLGDTGFIKNETDEVYIFNTKKENSIIIHS---AKKLPSDVFSSFKAIVDKNRRL 564 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH++THLLH +L ILG+H+ Q GS + D LRFD +H + IT EL IE+ V + Sbjct: 565 EIEKNHTSTHLLHFSLKKILGNHIQQKGSYVGEDYLRFDFSHYQKITVEELYKIENLVQE 624 Query: 642 IIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 +I +L + + + + KY VRV++ SS LC GT Sbjct: 625 LIFSDLILEEKRFSSLQEAEKNISFYKSETFENKYKQEVRVITFG------KSSELCIGT 678 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV TG I + I+SESSI GIRRI+AIT ++A +L ++ +S +K + Sbjct: 679 HVKHTGLIQIFKIISESSISYGIRRIKAITSKKAVQYLKSIHDQYQSFKKMMKYPESPFK 738 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFM--SHIISEVDSKELK 810 + + +E ++L+ ++ +LQ + L + + +N++ + E D +K Sbjct: 739 SFLI-LQKENQELKKKISEIRLQQMITLKKEYSLKAIQFSSINYICDIDLSKEKDINLIK 797 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 ++ L+ +I S + M+VG KE K + I + +A + + G Sbjct: 798 KIVLDLRNEI-SNLFMIVGFIKENKPVIFISISDSIIQSKNIHAHKIICKMTSYIHGKYW 856 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASF 895 G+ A + G N + + Sbjct: 857 -GKSFFATAIGTEKNGLSLVLKDAIAI 882 >gi|291320346|ref|YP_003515608.1| alanyl tRNA synthetase [Mycoplasma agalactiae] gi|290752679|emb|CBH40652.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma agalactiae] Length = 880 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 286/917 (31%), Positives = 448/917 (48%), Gaps = 96/917 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF+ H ++ S SLIP NDP+L++ NSG+ KN F+G++ P Sbjct: 1 MKKLTSTEIRQKWLDFFKSKDHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPA 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +T QK +R ND++NVG T+RHHTFFEMLGNFS G YFK+ AI A + L Sbjct: 61 FRLTNSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAFAKEFLVNVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++D +LY T Y+ED EA W + +G+ +I T + NFW + +GPCGPC+EIF+D Sbjct: 117 EMDLEKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTKDTNFWDLG-SGPCGPCTEIFYD 174 Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +GE L + E +RYIEIWN+VF QF + L + +IDTG GLER+A+ Sbjct: 175 RGEKYDSRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYIELKQKNIDTGAGLERLAS 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSF 284 ++Q+ NYD DLF ++I+ E+ + KY N N ++I DH+R+ Sbjct: 235 IMQDVPTNYDSDLFINIIREIEKYSPYKYVIENYFVKDAEQNEINTNFKIIADHIRTVVN 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG +N GRGY++RR++RR+ LG + + L+ + + Y E Sbjct: 295 AIADGAKISNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVHVVKASLPYEYDEKD--- 351 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + E ++ E+ F KT+++G VLL+ L K +I +G VAF L +T+G P+++ +I Sbjct: 352 --VIEQIKEEELLFSKTIEKGKVLLESFLDS--KSKIFDGAVAFNLLETYGFPIELTAEI 407 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLL 463 L +G +D+ +F + + S G + +K+ SL F+GY L Sbjct: 408 LHQKG-ISVDMDAFE----LAKEKHALASKGGKASGMDKVINSLALIDKKMDNFVGYSEL 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 ++ V ++ + VE +G V+ + TPFYA Sbjct: 463 -----------------------NATTKVLKLLDEENEVEAFETG--GYVLLETTPFYAT 497 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ D G I +++I DV K F +H G + S+ +D R L Sbjct: 498 SGGQRHDKGFIIQGENKIKIVDVFKDK---FGNHIHFVEGKMNIHESVSCYVDPTIRIGL 554 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHS THLL AL +LGSH+ Q GS + L FD + + ++K++ED V I Sbjct: 555 ERNHSGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYI 614 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++++ I + A GA L R + V G +S LCGGTH+S+T Sbjct: 615 SKSIDREYIITTVDKAKEMGAIMTLEEGEYMDPRAIRVVRF--GDITSDLCGGTHLSNTS 672 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLK-SLASFLK----------- 750 ++ I + +AG+ RI AI+ + +L ++KL LA+ +K Sbjct: 673 KLENFKITNVEKKQAGVFRIRAISSSKLVNEYLTDVNKKLNDELATIIKKIKELKSDYSA 732 Query: 751 -------VSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHII 801 + + +I EE R+ K ++ + E + KI D + ++ Sbjct: 733 PVVNENESDIETLNANIIKIIEECREAYKQLLKDHSNVEFDYETVKFVKINDFDVYINL- 791 Query: 802 SEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 E D+ ++K + +++ K QSG I +VG E + + I +A + + A Sbjct: 792 -EADASDVKVIAASVRDKFQSGKTIAIVGSRNENELLLAIA-----TRVIDANKMFKKIA 845 Query: 861 KVLGGGGGGGRPHMAQS 877 L G GGG P +A Sbjct: 846 SEL-DGRGGGAPILAMG 861 >gi|302666339|ref|XP_003024770.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517] gi|291188840|gb|EFE44159.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517] Length = 925 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 272/962 (28%), Positives = 429/962 (44%), Gaps = 132/962 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 +R TFL++F+KNGH G P + Sbjct: 23 VRDTFLDYFKKNGHTF-----------------------------GTVDPNSDFAQLKRA 53 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 54 HNSQK---------DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 104 Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +W+ G+ D I+ DNFW M + GPCGPCS Sbjct: 105 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 163 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI +D+ +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ Sbjct: 164 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 222 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284 ++LQ K++NYD D+F L A + +TG + +RV+ DHLR+ +F Sbjct: 223 VSILQNKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 282 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342 I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + Sbjct: 283 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 342 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400 + + E L E+ F KTLDRG + L G ++LYDT G P+D+ Sbjct: 343 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLPGADVWRLYDTFGFPVDL 402 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + R L D R +A+ S G ++ + ++ Sbjct: 403 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 446 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517 ++++ + + +KAI ++++ + +++ ++ D+ Sbjct: 447 ----TLSTLEKNGVPKTDDDAKFGKGNIVANIKAICHGKDVIDSTKDIPANEQIGIILDK 502 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE GGQ DTG + DG + G +H ++ G S++ D Sbjct: 503 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 562 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H I+ ++L+ IE Sbjct: 563 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 622 Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685 D I QN V + +G A+ G Y D VRVVSV Sbjct: 623 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 682 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 683 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERL 742 Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780 +D ++KSL L + V + + +I ++ Q K +++ Sbjct: 743 NRFEKMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 802 Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ +S + + + + K + ++ ++ K+ + + K + Sbjct: 803 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADA-SKVA 861 Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 VT DL +A + A + ++ GG GG+ +A G NK D+A+ +L Sbjct: 862 HGCYVTPDLTTKGASANEWASAVSSII-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 920 Query: 897 KK 898 +K Sbjct: 921 EK 922 >gi|148377682|ref|YP_001256558.1| alanyl-tRNA synthetase [Mycoplasma agalactiae PG2] gi|205830150|sp|A5IYK5|SYA_MYCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148291728|emb|CAL59114.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma agalactiae PG2] Length = 880 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 278/919 (30%), Positives = 448/919 (48%), Gaps = 100/919 (10%) Query: 1 MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M + IR +L+FF+ H ++ S SLIP ND +L++ NSG+ KN F+G++ P Sbjct: 1 MKKLTSTEIRQKWLDFFESKNHLVIESKSLIPVNDSSLLWINSGVATLKNYFSGKKVPPA 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +T QK +R ND++NVG T+RHHTFFEMLGNFS G YFK+ AI A + L Sbjct: 61 FRLTNSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVL 116 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++D +LY T Y+ED EA W + +G+ +I T + NFW + +GPCGPC+EIF+D Sbjct: 117 EMDFEKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYD 174 Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +GE L + E +RYIEIWN+VF QF + L + +IDTG GLER+A+ Sbjct: 175 RGEKYDRRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLAS 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSF 284 ++Q+ NYD DLF ++I+ E+ + KY N N ++I DH+R+ Sbjct: 235 IMQDVPTNYDSDLFINIIREIEKYSPYKYVIENYFAKDEHQGEINTNFKIIADHIRTVVN 294 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG +N GRGY++RR++RR+ LG + + L+ + + Y E Sbjct: 295 AIADGAKVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYNEKD--- 351 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + + ++ E+ F KT+++G +LL+ L + ++++ +G VAF L +T+G P+++ +I Sbjct: 352 --VIDAIKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEI 407 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLL 463 L +G +D+ +F + + S G + +K+ SL F+GY L Sbjct: 408 LHQKG-ISVDMDAFE----LAKEKHALASKGGKATGMDKVINSLALIDKKMDNFVGYSEL 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 +S V + + VE +G V+ + TPFYA Sbjct: 463 -----------------------SANSKVLKLFDEENEVEGFETG--GYVLLETTPFYAT 497 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ D G I +++I DV K F +H G + + +D R L Sbjct: 498 SGGQRHDKGFIIQGENKIKIIDVFKDK---FGNHIHFVEGKMNNHEPVSSFVDPNIRIGL 554 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHS THLL AL +LGSH+ Q GS + L FD + + ++K++ED V I Sbjct: 555 ERNHSGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYI 614 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +++ + A GA L R + V G +S LCGGTH+S+T Sbjct: 615 TKSIDREYITTTVDKAREMGAIMTLEEGEYMDPRAIRVVRF--GDITSDLCGGTHLSNTS 672 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLK-SLASFLK----------- 750 ++ I + +AG+ RI AI+ + +L ++KL LA+ +K Sbjct: 673 KLESFKITNVEKKQAGVFRIRAISSSKLVNEYLSKVNKKLNEELATIIKKIKELKSDYVA 732 Query: 751 -----------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799 ++ R++E+ E Y++L + L+ + E + KI D + + Sbjct: 733 PAINENEPDIETLNASINKRIDELREVYKQLLKESSN--LEFDYETVKFDKIKDYDVYIN 790 Query: 800 IISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 + +VD+ +K + +++ K Q G + ++G E + + I +A + + Sbjct: 791 L--DVDASAVKLIAASIRDKFQLGKTVAIIGSKNENELLLAIA-----TRAIDANKMFKK 843 Query: 859 SAKVLGGGGGGGRPHMAQS 877 A L G GGG P +A Sbjct: 844 LASELN-GRGGGAPILAMG 861 >gi|297489033|ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus] gi|296474486|gb|DAA16601.1| alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus] Length = 983 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 272/951 (28%), Positives = 415/951 (43%), Gaps = 91/951 (9%) Query: 4 VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 +++R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P Sbjct: 37 AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAG 96 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116 ++ V QKCVRAGG+H+DL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 97 FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 156 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RL+++ + D E+ +W + G+ A +++ +NFW M +TGP Sbjct: 157 VYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTGP 215 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CGPC+EI +D + +E+WNLVFMQ ++ LP+ +DTGM Sbjct: 216 CGPCTEIHYDL---------AGGAGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 266 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHL 279 GLER+ VLQ + + YD DLF L+ A Q G +RV+ DH+ Sbjct: 267 GLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADHI 326 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ S IADG+ P G VLRRI+RRA+ ++ L + L+P + +G AYP Sbjct: 327 RTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 386 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGL 396 EL ++ I + ++ F +L RG +++ L LG ++ +VA+ L GL Sbjct: 387 ELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 446 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+++ +L +G+ A EE + RA G + G Q Sbjct: 447 PLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNV-----HALGELQ 501 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVF 515 G Q + V + + G V GQ ++ Sbjct: 502 RRG----VPPTDDSPKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQHCGLLL 557 Query: 516 DQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ D G + + + + G F+ H +V LR + L Sbjct: 558 DKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQVQLH 617 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D R H+A HLL+ AL +LG Q GS + P+ LRFDV P+T +L++ Sbjct: 618 VDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRA 677 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYE 684 +E V + ++ V + L Y D VRV + + Sbjct: 678 VEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQ 737 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 S LC GTH+ TG I L I+ E + GI R+ A+ G++A+ + Sbjct: 738 AALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQE 797 Query: 745 L----------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLIH--AK 776 + A L G + V+ E+ + LQ A Sbjct: 798 VEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTAV 857 Query: 777 RKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 RKL++ + + +S L V L + ++L+ Sbjct: 858 RKLEMGQVRGGAEEKHEREEKGKLVVDSVSAECVSILSWVCRXLCTQAPGTSVLLLSPQP 917 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 K V + F A A +GG G R +AQ G + Sbjct: 918 LGKVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 967 >gi|323331402|gb|EGA72819.1| Ala1p [Saccharomyces cerevisiae AWRI796] Length = 648 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 225/656 (34%), Positives = 339/656 (51%), Gaps = 48/656 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 10 TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ Sbjct: 70 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY+T ++ DE EA +LWK G+ D I+ DNFW M + GPC Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPCSEI +D+ + + +E+WNLVF+QF ++ LP IDTGMG Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L + +++T ++ N +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338 + +F +ADG +P NEGRGYVLRRI+RR YAR L P L +++ +P Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396 EL + + E L E+ F KTLDRG L + + + + L+G ++LYDT+G Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + +GL ID F +A +E ++ S + L E A Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515 + + V + + V+E G+K ++ Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE GGQ DTG + D + + G H +E G L ++ + Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ E Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEE 644 >gi|242556759|pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 209/461 (45%), Positives = 296/461 (64%), Gaps = 14/461 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T Sbjct: 3 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + Sbjct: 63 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 182 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K + Sbjct: 183 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 234 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N++ID+ LIQ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV Sbjct: 235 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 294 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RRI+RRAM + LG P + + + M YPEL ++ ++ ++ E++RF K Sbjct: 295 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 354 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ + V+ + L+G F YDT+G P+D++ +I +GL GID+ F Sbjct: 355 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 413 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 LEEQR RAR + + + ++ LKE + F+G Sbjct: 414 QCELEEQRERARK-HFKVEAKKVKPVYSHLKELGKTSAFVG 453 >gi|60594334|pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium gi|60594335|pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium gi|60594336|pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex With L-Alanine gi|60594337|pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex With L-Alanine gi|60594338|pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl- Trna Synthetase In Complex Wtih Glycine gi|60594346|pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine Length = 465 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 209/461 (45%), Positives = 296/461 (64%), Gaps = 14/461 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K + Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N++ID+ LIQ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RRI+RRAM + LG P + + + M YPEL ++ ++ ++ E++RF K Sbjct: 296 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 355 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ + V+ + L+G F YDT+G P+D++ +I +GL GID+ F Sbjct: 356 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 LEEQR RAR + + + ++ LKE + F+G Sbjct: 415 QCELEEQRERARK-HFKVEAKKVKPVYSHLKELGKTSAFVG 454 >gi|291533808|emb|CBL06921.1| alanyl-tRNA synthetase [Megamonas hypermegale ART12/1] Length = 637 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 249/669 (37%), Positives = 374/669 (55%), Gaps = 43/669 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + +R +L+FF KNGH LPS+SLIP +DP+L+ +GM PFK FTG+ P + Sbjct: 1 MSGKELRRRYLDFFVKNGHLELPSASLIPKDDPSLLMIGAGMAPFKAYFTGKMTPPCTRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT Q+CVR G D++NVGRT RHHT+FEMLGNFSFG YFK AI+ AW+ LT E +L Sbjct: 61 TTSQRCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKYDAIKWAWEFLTGELELP 116 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +L+ T+Y +DEEA+K+W + ++ + I+++ DNFW + +GPCGP SEIF D GE Sbjct: 117 KDKLWATIYPDDEEAYKIWTTETDINPEHIVKL--EDNFWEIG-SGPCGPDSEIFIDLGE 173 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVF QF++ + L +IDTG GLER+A+VLQ Sbjct: 174 ERGCGSPTCGVGCDCDRYLEIWNLVFTQFDRTEDGKYNPLVHKNIDTGCGLERLASVLQN 233 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 K +N++ DL +I+ + +V +Y + ++ +VI DH RS SF++ DGILP+NEGR Sbjct: 234 KPSNFETDLMFPIIEYASKVANKEYGKDKETDISLKVIADHARSISFMVMDGILPSNEGR 293 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ +AR+LG + + + + Y EL K I++ + E++R Sbjct: 294 GYVLRRLLRRAVRHARMLGIEDKFLAGAVDVVDEIYSGVYDELTNRKDYIKKVISLEEDR 353 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL +G+ LL+ + L +L+G+V FKLYDT+G P ++ +IL +D Sbjct: 354 FATTLTQGMDLLNAEVEKLKAENKTVLDGEVGFKLYDTYGFPWELTDEILHE-NHMTLDK 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +F++A++EQR+RAR + D + Sbjct: 413 EAFDKAMDEQRTRARNARG-----------------------------ENKRMDIPDLRD 443 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + I + + G + ++ D TPFYAE GGQ GD G Sbjct: 444 SNIGELKVDETARQAKIVCIWKDAKTTNSLEDGDEAGLILDVTPFYAEGGGQEGDIGSLK 503 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D Q+ D +K +G + V G L ++ +T+D +N+ + NH+ATHLL Sbjct: 504 TDMGNAQVIDTKKLPDGSVYNIVHVTEGSLHVGDTVEITVDMKNKLASARNHTATHLLQA 563 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G H++Q GS + LRFD + +PI++ +L+ +E+ VN I V MN Sbjct: 564 ALKRVVGDHINQAGSAVNAHHLRFDFSSFEPISAEQLQQVEEMVNAEILTGKDVEISHMN 623 Query: 656 REDAIASGA 664 +EDA S Sbjct: 624 QEDAKKSWC 632 >gi|126310118|ref|XP_001367753.1| PREDICTED: similar to alanyl-tRNA synthetase like [Monodelphis domestica] Length = 1109 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 267/909 (29%), Positives = 428/909 (47%), Gaps = 86/909 (9%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 + S IRT FL FF+ ++GH+L+PS+S++P +DP L+F N+GM FK IF G P Sbjct: 71 SASVIRTAFLHFFRDRHGHQLVPSASVMPRSDPGLLFVNAGMNQFKPIFLGTVDPRSEMA 130 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115 ++ V QKCVR GG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT Sbjct: 131 RFRRVANSQKCVRTGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 190 Query: 116 KEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 +++ Q RL++T + D E+ +W + G+ + +++ ++NFW M E G Sbjct: 191 HIYEIPQDRLWVTYFGGNPPEGLAPDYESRDIWLSL-GVPSSRVLSFGPSENFWEMGEIG 249 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPC+EI +D + +E+WNLVFMQ+ ++ +LP+ +DTG Sbjct: 250 PCGPCTEIHYDLS---------GGVGPPQLVELWNLVFMQYNREADGSLQLLPQRHVDTG 300 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDH 278 MGLER+ VLQ K + YD DLF L+ A +Q + + +RV+ DH Sbjct: 301 MGLERLVAVLQNKRSTYDTDLFSPLLTAIQQGCRAPPYQGQVGKADGGHTDMAYRVVADH 360 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 +R+ S +ADG+ P G VLR+I+RRA+ ++ L + L+P + +G AY Sbjct: 361 IRTLSICMADGVYPGMSGASLVLRQILRRAIRFSSEVLQAPPGFLSSLVPIVVETLGDAY 420 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + I + E+ F +L+RG ++D L LG + +VA+ L GLP Sbjct: 421 PELQKNTTQITSLVAEEETAFLSSLERGRRVIDRTLQQLGPSHLFPAEVAWSLSGNLGLP 480 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 LD++ +L +G+ A EE + R++A ++ + Sbjct: 481 LDLVGLMLEEKGVQLDSAGLEQLAQEEAQRRSQAQQAKPAKKAELRLDIHALSQLQR--- 537 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFD 516 + + + G + GQ+ ++ D Sbjct: 538 ----QGVPPTDDSSKYNYSLLPNGSYEFGACEAEIIQLYTLDGAATDSVGGGQRCGLLLD 593 Query: 517 QTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +T FYAE GGQ D G I + + + G F+ H ++ L+ + L + Sbjct: 594 KTNFYAEQGGQACDRGYLICKGQQDVLFPVIGAQIYGGFILHEVIALETLKVGDQVQLHV 653 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + R H+ATHLL AL LG + Q GS ++P+ LRFDV P+TS +L+++ Sbjct: 654 DEEWRLGCMKKHTATHLLSWALRQELGPNTQQCGSHLSPERLRFDVATLAPLTSEQLQAV 713 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYED 685 E+ + + Q+ PV + E L Y D VRV ++ + Sbjct: 714 EETIRVAVGQDKPVYMAEVALELTTQIPGLRSLDEVYPDPVRVVSVGVPVAIALAPTSQA 773 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKL 742 S LC GTH+ TG I L IV E + GI R+ A+TG+ +AR +++ Sbjct: 774 ALQTSVELCCGTHLLRTGAIGDLTIVGEKPLSKGIVRLVAVTGEQAQQARDVGQNLAQEV 833 Query: 743 KSLASFLKVSQGNVVG------RVEEIWE----------EYRKLQLIHAKR--------- 777 ++ ++ L NVV V + + + R+LQ I + Sbjct: 834 EAASARLHQGSQNVVEAQHLSKAVGRLSDTVDTAVMPQWQRRELQAILKRLQRRANTAIR 893 Query: 778 KLQLNVEDLSCHKIADVNFMS-HIISEVDSKELK---SVMDALQKKIQSGIIMLVGISKE 833 KL++ + +I + + + I+ V ++ L V+ L +++ ++L+ Sbjct: 894 KLEIGLATAKSREILEKHPVGPFIVDTVPTESLSLLVKVVKQLCEQVPGASVLLLSPQAP 953 Query: 834 KKASVLIVV 842 K V Sbjct: 954 GKVLCACQV 962 >gi|39938791|ref|NP_950557.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M] gi|81565108|sp|Q6YQR8|SYA_ONYPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39721900|dbj|BAD04390.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M] Length = 864 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 274/934 (29%), Positives = 433/934 (46%), Gaps = 110/934 (11%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +L+FF H + SSSLIP N+ L++ N+G+ P K F G + P ++ + Sbjct: 1 MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQTPPFRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T VQKC+R ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI A++LLT K F Sbjct: 61 TNVQKCIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFA 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LYIT + +D++ ++ W + G+ + +I + NFW + GP GPC+EIFFD+ Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVEKNHLIPL--KSNFWQIGP-GPSGPCTEIFFDR 172 Query: 180 GECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233 G+ E +R+IEIWN+VF Q+ K ++ LP +IDTG GLER+ Sbjct: 173 GKTFDPRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ N++ DLF LI+A E++T +KY G + ++I DHL++ F I DG + Sbjct: 233 ACILQNTKTNFETDLFFPLIKALEKMTQIKYTGQE--SFKIIADHLKTLVFAINDGAVLT 290 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NE RGYVL++++RRA + LG +P + L+P M Y EL + +I + L Sbjct: 291 NEKRGYVLKKLLRRAANEGKKLGLDKPFLHQLVPPTAAMMKDFYKELCTNQEIIAKVLLQ 350 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ++ F +TL L+ L+G FKLYDT+G+P D++ D + + Sbjct: 351 QENIFEQTLKTAEKTFLQHLTQ----NTLSGQNFFKLYDTYGIPEDLILDYAKKKNITT- 405 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + L + ++ ++ + ++ S + ++FIGY Sbjct: 406 DYQKFQELLHDHQNLSKQNQTSQIHMNKQE--ESFLQFLTPSEFIGYTNF---------- 453 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V + +G +V ++TPFYA GGQ+ D G Sbjct: 454 -------------TCKTKVIKVFDKG-------------IVLEKTPFYANMGGQIEDEGW 487 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + K + +G + I+ R Q+S +H+ATHLL Sbjct: 488 IDNTKVT-------KITKLPNGQILHEVQGNFCEGQEVYACIEKTKRNQISYHHTATHLL 540 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 L LGSH+ + GS + LR+D H + IT L IE VN +I +++PV Sbjct: 541 EAVLQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQ 600 Query: 654 MNREDAIASGAA---ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 ++ DA A KY D+VR+VS++ S LCGGTH ++T ++ I Sbjct: 601 LSIPDAQKKYATLLEQNQKAKYKDKVRIVSIDTF-----SVDLCGGTHATNTKDLEHFTI 655 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKV-SQGNVVGRVEEI-- 763 +S SI +GI RIEA+ + L + L L K N++ V+ Sbjct: 656 LSCESISSGIYRIEAVCNNNCQESLNAKLVPYQNDLHQLTQKAKSLQTQNLIFDVKNFPP 715 Query: 764 -----------WEEYRKLQLIH---AKRKLQLNVEDLSCHKIA------DVNFMSHIISE 803 + + Q K+ L+ + +++ + M I E Sbjct: 716 ITQSYQDILNYQKHIKAQQQALVLFEKKVLEYHQKNMVQAESNFLPPQITKKMMLTIEEE 775 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 + LK M+ + K ++ L + EK + +A +L + + ++ Sbjct: 776 KPLEVLKFFMNHIFDKYHLEVLFLSYVQPEKIVFLC------KSKTLHAGNLIKEAVSLV 829 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 G GGG +AQ G +Q + V + L+ Sbjct: 830 C-GSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862 >gi|218516688|ref|ZP_03513528.1| alanyl-tRNA synthetase [Rhizobium etli 8C-3] Length = 588 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 347/614 (56%), Positives = 434/614 (70%), Gaps = 27/614 (4%) Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDLDN G T H TFFEMLGNFSFG YFKE AI+LAW L+T+ F L + RL Sbjct: 1 CVRAGGKHNDLDNFGYTACHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGLPKHRLL 60 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQGE + GG Sbjct: 61 VTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQGENVWGG 120 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 PGS+ E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ + +D Sbjct: 121 PPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFD 180 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 DLF+ L A E G+K +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIM Sbjct: 181 TDLFRTLTGAIEDAVGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIM 238 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF KTL+RG Sbjct: 239 RRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERG 298 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR G+DI F A++ Q Sbjct: 299 LSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFTDAMQRQ 357 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 ++ AR+H G G TE +WF L+EK+GAT+F+GYD T Sbjct: 358 KAEARSHWAGSGEKATETVWFELREKHGATEFLGYD-----------------------T 394 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG D +++I+D Sbjct: 395 EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHGKIEISD 454 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 QKK EG+FVH V G +T ++VLT+D+ R +L NHSATHLLH AL +LG+HV Sbjct: 455 TQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHV 514 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+I+ QN PV TR+M+ +DAIA GA Sbjct: 515 AQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDAIAEGAM 574 Query: 666 ALLGTKYNDRVRVV 679 AL G KY D VRVV Sbjct: 575 ALFGEKYGDEVRVV 588 >gi|152002558|dbj|BAF73582.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W] Length = 864 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 277/935 (29%), Positives = 435/935 (46%), Gaps = 112/935 (11%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 IR +L+FF H + SSSLIP N+ L++ N+G+ P K F G +KP ++ + Sbjct: 1 MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRI 60 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T VQKC+R ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI A++LLT K F Sbjct: 61 TNVQKCIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFA 116 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +LYIT + +D++ ++ W + G+ + +I + +NFW + GP GPC+EIFFD+ Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVEKNHLIPL--KNNFWQIGP-GPSGPCTEIFFDR 172 Query: 180 GECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233 G+ E +R+IEIWN+VF Q+ K ++ LP +IDTG GLER+ Sbjct: 173 GKTFDSRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232 Query: 234 ATVLQEKTNNYDIDLFKHL