>gnl|CDD|163395 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. Length = 902

Score = 375 bits (965), Expect = e-104 Identities = 264/965 (27%), Positives = 419/965 (43%), Gaps = 189/965 (19%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 + +R FL FF+K+GH + ++ + T + + F+ T G P + Sbjct: 57 TLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPANPL 116 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116 Q C+R ND+DNVGRT RH T FEM+ + +F Y+K+ ++ ++ L Sbjct: 117 VISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLE- 171 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 L I D +E +K ++ W G GPC E+ Sbjct: 172 -------ELGI---DPEEITYK-------------------ESPW--EGGGNAGPCFEVI 200 Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229 GGL E+ LVFMQ+E+ + E I +P +DTG G Sbjct: 201 V-------GGL-----------ELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYG 242 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------- 270 LER Q YD +F ++ ++ G++ I+ Sbjct: 243 LERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLR 301 Query: 271 NHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 R I DH R +F++ DGI+P+N GY+ R ++ Sbjct: 302 ELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVI 361 Query: 306 RRAMCYARLLGYTEPLM----MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR + R LG PL M L E+ YPEL + K I + L E+E++ +T Sbjct: 362 RRTLRLMRELGLDIPLSDLVEMQL-----EELKKIYPELKENKDYILDILDLEEEKYRET 416 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII-SFNQ 420 L+RG +++ +L K EI D+ +LYD+HG+P +I+++I G A ++I +F Sbjct: 417 LERGRRIVERLLK--TKKEIPLDDLI-ELYDSHGIPPEIVKEIAAELG-AEVEIPDNFYS 472 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-DRKVLCQK 479 + E+ + K + + T+ + Y+ M+E + KVL Sbjct: 473 IVAERHEKEEKEE------ELPKDYEERAKDLPETRRLFYE----DPTMREFEAKVL--- 519 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + VV DQT FY E GGQ DTG I +G Sbjct: 520 --------------------GVFDN-------YVVLDQTAFYPEGGGQPADTGYLITNGG 552 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++++ DVQK G+ VH V+ ++ + ID++ R +L +H+ATH+L A Sbjct: 553 KIRVVDVQKV-GGVIVH--KVDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARR 609 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q G+ D R D+TH K I+ E+K IE N I+ +N PV + M+R +A Sbjct: 610 VLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEA 669 Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 L G +RVV +E D CGGTH +TGEI + I+ I+ Sbjct: 670 EQKYGFRLYQGGVPPGREIRVVEIEDWD-----VQACGGTHCRNTGEIGPIKILKTERIQ 724 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---EIWEEYRKLQLIH 774 G+ RIE G+ A ++ ++ L+ + LKV + V+ E W+E RK + Sbjct: 725 DGVERIEFAAGEAALEYIQELEDLLRESSDILKVPPEQLPETVKRFFEEWKEQRKE-IER 783 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K+KL + + + I+ + D EL+ + + L +K G+++++ Sbjct: 784 LKKKLAELKIYELISEAERIGGVEVIVELVDADMDELQEIAEKLAEK---GLVVVLVSGG 840 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 V+I E +A +L R AK L GGGGGG+P +AQ GGP+ K D+A+ + Sbjct: 841 GGNGRVVISSGEKA--GVDAGELVREIAKEL-GGGGGGKPDLAQGGGPDDLKIDEALEKI 897 Query: 893 ASFLK 897 SFL+ Sbjct: 898 KSFLR 902

RPSBLAST alignment for GI: 254780191 and conserved domain: TIGR03683