RPSBLAST alignment of GI: 254780191 and protein with PDBid: 1yfs

>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465
 Score =  491 bits (1265), Expect = e-139
 Identities = 213/468 (45%), Positives = 300/468 (64%), Gaps = 15/468 (3%)

Query: 1   MS-NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           MS +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+
Sbjct: 1   MSLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYK 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   
Sbjct: 61  RATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+
Sbjct: 121 LPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE   G         ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ 
Sbjct: 181 GEEYEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQG 232

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +N++ID+   LIQ  E+V+G KY       V  RVI DHLR+ +F I+DG++P+NEGR
Sbjct: 233 KNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGR 292

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RRI+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++R
Sbjct: 293 GYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKR 352

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTL  G+  +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+
Sbjct: 353 FIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDL 411

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
             F   LEEQR RAR H     +   + ++  LKE    + F+G   L
Sbjct: 412 EGFQCELEEQRERARKHFKV-EAKKVKPVYSHLKELGKTSAFVGAAAL 458