RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (898 letters) >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Score = 617 bits (1592), Expect = e-177 Identities = 174/795 (21%), Positives = 302/795 (37%), Gaps = 168/795 (21%) Query: 3 NVSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVY 58 + +R FL FF+ + H + ++P ++ + ++ F+ + +G+ P Sbjct: 58 TLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDL 113 + Q +R D+DNVG T RH T FEM+ + +F Y+ + ++LA++ Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEF 173 Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 TKE + + K +N W+ G GP Sbjct: 174 FTKELXMXPEDI--------------TFK---------------ENPWAGG--GNAGPAF 202 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------------EQQNKQERFILPK 221 E+ + +E+ LVFMQ+ ++ + Sbjct: 203 EVLYR------------------GLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMET 244 Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLF-------------------------------- 249 +DTG GLER+ + Q YD L Sbjct: 245 XVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDI 304 Query: 250 ------KHLIQASEQVTGMKYEGNN-----IVNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++L + + G+ E I DH ++ +F++ADG++P+N G Sbjct: 305 EDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAG 364 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+ R ++R+++ + R LG PL ++ E+ +PE + + +I E + E++ + Sbjct: 365 YLARLLIRKSIRHLRELGLEVPL-SEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXY 423 Query: 359 GKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL RG L+ + + + + Y++HGL +I+ +I G+ Sbjct: 424 AETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPD 483 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +F + ++ R + E + F L + T+ + Y+ Sbjct: 484 NFYSMVAKEAERTKEEK------GEELVDFELLKDLPDTRRLYYE--------------- 522 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 E + V+ D T FY E GGQ DTG I Sbjct: 523 ------------------DPFMXEFDAXVLRVIXDWVILDATAFYPEGGGQPYDTGVLIV 564 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G + +T+VQ G + H + + G M + ID+ R Q +H+ TH+L A Sbjct: 565 NGREVXVTNVQXV--GXVIIHXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGA 622 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS +T D R D++H I+ EL IE N I+ ++ V + R Sbjct: 623 LVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPR 682 Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 A L G +RVV + CGGTH+ STG + + I+ Sbjct: 683 TTAEQXYGFRLYQGGVVPGREIRVVXI----EDW-DVQACGGTHLPSTGLVGPIXILRTE 737 Query: 715 SIRAGIRRIEAITGQ 729 I+ G+ RI G+ Sbjct: 738 RIQDGVERIIFACGE 752 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Score = 570 bits (1470), Expect = e-163 Identities = 177/785 (22%), Positives = 305/785 (38%), Gaps = 165/785 (21%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 + +R +L FF++ GH + ++ + T + + F+ T G P + Sbjct: 61 ELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPL 120 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T Q C+R +DLD+VGRT RH T FEM+ + +F KE + W T + Sbjct: 121 TISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKE----IYWKNETVAY--- 169 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L ++ G+ + I+ + W+ G GPC E Sbjct: 170 --------------CTELLNEL-GVKKEDIVYK---EEPWAGG--GNAGPCLEAIVG--- 206 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFI-LPKMSIDTGMGLERMA 234 +E+ LVFM E+ + K R+ + +DTG GLER Sbjct: 207 ---------------GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFV 251 Query: 235 TVLQEKTNNYD---------------------IDLFKHLIQASEQVTGMKYEGNN----- 268 + YD + + ++ S ++ G+ E Sbjct: 252 WASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQ 311 Query: 269 ----------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 + + DH R F++ DG++P+N G GY+ R ++R Sbjct: 312 LRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIR 371 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 R++ A L + L+ +G + + ++E L E ER+ T+ +G Sbjct: 372 RSLRLAEELEL-GLDLYDLVEMHKKILGFEFDVPLS---TVQEILELEKERYRTTVSKGT 427 Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426 L++ + + + L D +LYD+HG+P+++ I +G L ++ Sbjct: 428 RLVE---RLVERKKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRH 484 Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 S+A ++ +L+ +Y AT+ + YD ++ + +V+ Sbjct: 485 SKAEK---------VQEKKITLQNEYPATEKLYYD---DPTLLEFEAEVIG--------- 523 Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546 + V+ +++ FY E+GGQ D G I +G + ++ DV Sbjct: 524 ---------------------VEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDV 562 Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606 + + + + ID R + +HSATH+L ++L +LG+HV Sbjct: 563 LEADGVVLHVV---KGAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVW 619 Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666 Q G+ R DVTH + + E+K IE N I N P+ M+R +A Sbjct: 620 QAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFR 679 Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 L G ++RVV V CGGTH STGEI +L I+ SI+ G+ R E Sbjct: 680 LYQGGVPPGRKIRVVQVGD------DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFE 733 Query: 725 AITGQ 729 G+ Sbjct: 734 FAAGE 738 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Score = 556 bits (1434), Expect = e-159 Identities = 236/441 (53%), Positives = 308/441 (69%), Gaps = 14/441 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT E F L Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI +DNFW M +TGPCGPC+ Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DT MGLER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSN--KSLRVIADHIRSCAFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 418 Query: 413 IDIISFNQALEEQRSRARAHS 433 +D F A+EEQR RAR S Sbjct: 419 VDEAGFEAAMEEQRRRAREAS 439 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Score = 491 bits (1265), Expect = e-139 Identities = 213/468 (45%), Positives = 300/468 (64%), Gaps = 15/468 (3%) Query: 1 MS-NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59 MS + IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ Sbjct: 1 MSLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYK 60 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ Sbjct: 61 RATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLK 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + +LY++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+ Sbjct: 121 LPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 GE G ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ Sbjct: 181 GEEYEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQG 232 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297 K +N++ID+ LIQ E+V+G KY V RVI DHLR+ +F I+DG++P+NEGR Sbjct: 233 KNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGR 292 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RRI+RRAM + LG P + + + M YPEL ++ ++ ++ E++R Sbjct: 293 GYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKR 352 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTL G+ + V+ ++ + L+G F YDT+G P+D++ +I +GL GID+ Sbjct: 353 FIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDL 411 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 F LEEQR RAR H + + ++ LKE + F+G L Sbjct: 412 EGFQCELEEQRERARKHFKV-EAKKVKPVYSHLKELGKTSAFVGAAAL 458 >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens atcc 13124} Length = 241 Score = 115 bits (288), Expect = 4e-26 Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 19/234 (8%) Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 +GEI+E K V+ DQT F+ GGQ+GD G G + DV ++ EG H Sbjct: 17 KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDGIK----VLDVYEE-EGKVYHV 71 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 E +L +D++ R H HLL + G++ + + Sbjct: 72 LEKEPKK---LKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCG--FHLGKEIS 126 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 D + ++ E N +I +NL V + ++++ L + Sbjct: 127 TVD--IVGFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKTDEE--- 181 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + + C G H +T ++ ++ I RIE + G RA Sbjct: 182 ---IRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRA 231 >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Score = 111 bits (279), Expect = 5e-25 Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 31/230 (13%) Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556 E + + ++ DQT FY GGQ D G G ++ DV K EG H Sbjct: 14 YLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGV----EVLDVYKDEEGNVWH 69 Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN-GSCITPD 615 + E + + L ID+ R +L H+ HLL H L+ +LG Q GS ++ + Sbjct: 70 V-VKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVE 128 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675 R+D+ + + + + I N + + V + + Sbjct: 129 KGRYDIAYPENLNK-YKEQIISLFNKYVDEGGEVKIWWEGD--------------RRYTQ 173 Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 +R V CGGTHV EI + + SSI G +R+E Sbjct: 174 IRDFEVI----------PCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 213 >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Length = 171 Score = 96.3 bits (239), Expect = 3e-20 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 12/175 (6%) Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVED 785 G+ A + + L+ +S L+V + VE +EE++ ++ K + D Sbjct: 2 GEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWAD 61 Query: 786 LSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 + + + + M + V D + L+ + + L +K G +M G K V Sbjct: 62 ILMERAEEFDSMKVVAEVVDADMQALQKLAERLAEKGAVGCLMAKGEGKVF-------VV 114 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 +++A +L R +V G GGG R +AQ ++ + + FL + Sbjct: 115 TFSGQKYDARELLREIGRVAKGSGGG-RKDVAQGAVQQLLDREEMLDVIFRFLSE 168 >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A Length = 157 Score = 92.2 bits (228), Expect = 5e-19 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 5/142 (3%) Query: 586 NHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSA H++ A+ +LGS S + + V + + E++ IE N+ + Sbjct: 8 THSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67 Query: 645 QNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N P+ + RE+A G + VR++ V + + C H +TG Sbjct: 68 ENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIED--WNVNACNKEHTKTTG 125 Query: 704 EIMLLYIVS-ESSIRAGIRRIE 724 EI + I G+ I Sbjct: 126 EIGPIKIRKVRFRKSKGLLEIH 147 >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} Length = 111 Score = 80.3 bits (198), Expect = 2e-15 Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 + D + EV+ +EL+++ D L+++ + ++ + K K + +I V++++ D+ Sbjct: 5 NVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEISDK 63 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 NA ++ R KVL R +AQ GG +K +A+ + L Sbjct: 64 VNAKEVIREVGKVL-KXXXXXRADLAQGGGKAPDKFPEAVKLLKEIL 109 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 66.5 bits (162), Expect = 2e-11 Identities = 49/262 (18%), Positives = 89/262 (33%), Gaps = 79/262 (30%) Query: 1 MSNVSSIRTTFLEFF--QKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKNIFTGQ 53 M ++S++ ++ + + N H LP+ SL+ N N + +G Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH--LPAGKQVEISLV--NGAK----N-----L--VVSGP 382 Query: 54 EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNR----HHTFFEMLGNF-SFGGYFKERAIQ 108 + +Y T++K +A D + + R + F + F S + Sbjct: 383 PQSLYGLNLTLRK-AKAPSG-LDQSRIPFSERKLKFSNRFLPVASPFHSH--LLVPASDL 438 Query: 109 LAWDLLTKEFDLDQRRLYITVYD----EDEEAFKLWKKISGLSADKIIR-ITTNDNFWSM 163 + DL+ + + + I VYD D L + +SG +++I+ I W Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSD-----L-RVLSGSISERIVDCIIRLPVKWET 492 Query: 164 AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 T + I D G PGG G + L +NK Sbjct: 493 T-TQF--KATHI-LDFG---PGGASG----------LGVLT-----HRNKD--------- 521 Query: 224 IDTGMGLER--MATVLQEKTNN 243 G G+ R +A L ++ Sbjct: 522 ---GTGV-RVIVAGTLDINPDD 539 Score = 56.1 bits (135), Expect = 3e-08 Identities = 97/549 (17%), Positives = 150/549 (27%), Gaps = 242/549 (44%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +L + H L + L+ ND TL+ T K + K A Sbjct: 88 LTEFENCYL--EGNDIHALA--AKLLQENDTTLVKT-------KELI----KNYITA--- 129 Query: 64 VQKCVRAGGKHNDLDNVGRTNRH-HTFFEML--GNFS----FGG------YFKE-RAIQ- 108 + A + F + GN FGG YF+E R + Sbjct: 130 ---RIMAKRP--------FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178 Query: 109 ----LAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SM 163 L DL+ L + +A K++ + GL + I+ W Sbjct: 179 TYHVLVGDLIKFS----AETLS-ELIRTTLDAEKVFTQ--GL--N-ILE-------WLEN 221 Query: 164 AETGP------CGPCSE--IFFDQ-----------GECIPG-------GLPGSSEEG--- 194 P P S I Q G PG G G S+ G Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQ-GLVT 279 Query: 195 ----------ERY-------IEIWNLVFMQFE-QQNKQERFILPKM---SIDTG------ 227 E + I + L F+ + + P + S++ Sbjct: 280 AVAIAETDSWESFFVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337 Query: 228 M----GLERMATVLQE---KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDH 278 M L + +Q+ KTN HL A +QV I VN Sbjct: 338 MLSISNLTQ--EQVQDYVNKTN-------SHL-PAGKQVE--------ISLVNGA----- 374 Query: 279 LRSSSFLIADGILPANEGRGYV--LRRIM--------------RRAMCYARLLGYTEPLM 322 + +++ G P G LR+ R+ R L P Sbjct: 375 ---KNLVVS-G--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF- 427 Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382 H S L+ A LI + L + V + Sbjct: 428 -H----------SHL--LVPASDLINKDLVKNN-----------VSFNA----------- 452 Query: 383 NGDVAFKLYDTH-GLPLDIMQDILCARGLAG------IDIIS-----FNQALEEQRSRAR 430 D+ +YDT G D+ R L+G +D I + + + + Sbjct: 453 -KDIQIPVYDTFDG------SDL---RVLSGSISERIVDCIIRLPVKWETTTQFKAT--- 499 Query: 431 AHSLGLGSG 439 H L G G Sbjct: 500 -HILDFGPG 507 Score = 55.3 bits (133), Expect = 6e-08 Identities = 121/746 (16%), Positives = 206/746 (27%), Gaps = 312/746 (41%) Query: 1 MSNVS---------SIRTTFLEFFQKNGHELLPSSSLIPCNDPTL--MFTNSGMVPFKNI 49 M S S+ L +P++S + L F P + Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL----------VPTASFFIAS--QLQEQFNKILPEPTEG- 47 Query: 50 FTGQEKP------VYQAVTTV--QKCVRAGGKHND-LDNVGRTNRHHTFFE---MLGNFS 97 F ++P V + + V G+ + L+ T FE + GN Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC------LTEFENCYLEGN-- 99 Query: 98 FGGYFKERAIQ-LAWDLLT-KEFDLDQRRLYITVYDEDEEAFK----LWKKISGLSADKI 151 I LA LL + L + + I Y + S + Sbjct: 100 --------DIHALAAKLLQENDTTLVKTKELIKNY------ITARIMAKRPFDKKSNSAL 145 Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYI----EIWN----L 203 R N +A IF QG + Y +++ L Sbjct: 146 FRAVGEGNAQLVA----------IFGGQGN------------TDDYFEELRDLYQTYHVL 183 Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263 V I + A L E LI+ + + Sbjct: 184 V----------GDLI------------KFSAETLSE------------LIRTTLDAEKVF 209 Query: 264 YEGNNIV------NHRVIVDHLRSS--SF-LIADGILPANEGRGYVLRRIMRRAMC-YA- 312 +G NI+ ++ D+L S S LI G++ + Y Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLI--GVI----------------QLAHYVV 251 Query: 313 --RLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRSED--ERFGKTLDRGLV 367 +LLG+T + L T G S Q L+ + D E F ++ + + Sbjct: 252 TAKLLGFTPGELRSYLKGA-T--GHS------QG-LVTAVAIAETDSWESFFVSVRKAIT 301 Query: 368 LL--DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD-----------ILCARGL---- 410 +L GV + Y LP I++D +L L Sbjct: 302 VLFFIGVRCYEA-------------YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348 Query: 411 --AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI---------G 459 ++ N L + ++ SL GA + G Sbjct: 349 VQDYVN--KTNSHLPAGK----------------QVEISLVN--GAKNLVVSGPPQSLYG 388 Query: 460 YDL-LRGSK-----------FMKEDRKVLCQKP--PIDLTNGV---SSIVKAIVQQGEIV 502 +L LR +K F + RK+ P+ S ++ +++ Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSE--RKLKFSNRFLPV----ASPFHSHLLVPAS---DLI 439 Query: 503 EEAVSGQKVEVVFDQ--TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 + + V P Y DT DG +D++ + I IV Sbjct: 440 NKDLVKNNVSFNAKDIQIPVY--------DTF----DG-----SDLRVLSGSIS--ERIV 480 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH---ALSTILGSHVSQN--GSCITPD 615 + + L + ++ + ATH+L S + G +N G+ Sbjct: 481 D-------CIIRLPVKWET----TTQFKATHILDFGPGGASGL-GVLTHRNKDGT----- 523 Query: 616 GLRFDVTHSKPITSAELKSIEDNVND 641 G+R I + L N +D Sbjct: 524 GVRV-------IVAGTLDI---NPDD 539 Score = 54.2 bits (130), Expect = 1e-07 Identities = 63/357 (17%), Positives = 119/357 (33%), Gaps = 109/357 (30%) Query: 581 RQLSINH-SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R L+++H S H+L + T SQ L+ P + + ++ Sbjct: 7 RPLTLSHGSLEHVLL--VPTASFFIASQ---------LQEQFNKILPEPTEGFAADDE-- 53 Query: 640 NDIIAQNLPVVTR----IMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GG--VHS 690 +V + + + + G ++ + + E+E+ G +H+ Sbjct: 54 ---PTTPAELVGKFLGYVSSLVEPSKVGQ-------FDQVLNLCLTEFENCYLEGNDIHA 103 Query: 691 --SALCG--GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--GQDEKLKS 744 + L T + T E++ YI ++ R + + S L + + Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKK----SNSALFRAVGEGNAQL 156 Query: 745 LASFLKVSQGNVVGRVEE---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801 +A F QGN EE +++ Y L V DL A+ +S +I Sbjct: 157 VAIF--GGQGNTDDYFEELRDLYQTYHVL------------VGDL-IKFSAET--LSELI 199 Query: 802 SEVD------SKELKSVMDALQKKIQS-GIIMLVGISKEKKASV---LIVVTEDLLDRFN 851 ++ L +++ L+ + L+ + LI V Sbjct: 200 RTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLS------IPISCPLIGV--------- 243 Query: 852 AVDLAR--LSAKVLGGGGGGGRPHMAQSGGPNGNKADQ------AIAGV---ASFLK 897 + LA ++AK+LG G R ++ G G+ Q AIA SF Sbjct: 244 -IQLAHYVVTAKLLGFTPGELRSYLK---GATGHS--QGLVTAVAIAETDSWESFFV 294 Score = 40.7 bits (95), Expect = 0.002 Identities = 72/327 (22%), Positives = 115/327 (35%), Gaps = 98/327 (29%) Query: 127 ITVYDEDEEAFKLW-------KKISGLSADKIIRITTNDNFWSMAETGPCGPCS-EIFFD 178 + +Y + A +W K G S I+ I N+ P + I F Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFS---ILDIVINN------------PVNLTIHF- 1676 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GG E+G+R E N M FE +D + E++ + Sbjct: 1677 ------GG-----EKGKRIRE--NYSAMIFE------------TIVDGKLKTEKIFKEIN 1711 Query: 239 EKTNNYDIDLFKHLIQASE----QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 E + +Y K L+ A++ +T M+ + + L+S + AD + Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLME---------KAAFEDLKSKGLIPADATFAGH 1762 Query: 295 EGRGYVLRRIMRRAMCYARLL------GYTEPLMMHLLPALCTEMG-SAY------PELI 341 Y + M L+ G T M +P E+G S Y P + Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMT---MQVAVPR--DELGRSNYGMIAINPGRV 1817 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG--LPLD 399 A +E L+ ER GK G ++ EI+N +V + Y G LD Sbjct: 1818 AASF-SQEALQYVVERVGKR--TGWLV-----------EIVNYNVENQQYVAAGDLRALD 1863 Query: 400 IMQDILCARGLAGIDIISFNQ--ALEE 424 + ++L L IDII + +LEE Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEE 1890 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Score = 56.2 bits (135), Expect = 3e-08 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 + HS HL+ HA+ + G+ G I G +D + I+S + + IE + I+ Sbjct: 73 LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700 +N+ + ++++R++A +Y + E E+ ++S LC G HV Sbjct: 132 ENMKIERKVVSRDEAK----ELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187 Query: 701 STGEIMLLYIVSESS 715 ST +I ++S + Sbjct: 188 STAKIKEFKLLSTAG 202 >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Score = 46.6 bits (110), Expect = 2e-05 Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 18/132 (13%) Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDNVN 640 I HS HLL HA+ + + + I P +G +DV + +T +++++E ++ Sbjct: 71 IRHSCAHLLGHAIKQLWPHTKM-----AIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMH 125 Query: 641 DIIAQNLPVVTRIMNREDAIA------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 ++ +N V+ + ++ +A + + + + + V +C Sbjct: 126 ELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYV---DMC 182 Query: 695 GGTHVSSTGEIM 706 G HV + Sbjct: 183 RGPHVPNMRFCH 194 >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 Score = 37.8 bits (87), Expect = 0.012 Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 9/174 (5%) Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVS 606 K V+ +V+ L + + I ++ L I HS HLL HA+ + Sbjct: 33 KACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKM 92 Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666 G + +G +DV + +T +++++E ++++ +N V+ + ++ +A + A Sbjct: 93 AIG-PVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANR 151 Query: 667 LLGTKYNDRVRVVSVEYED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 G Y + ++ ++D +C G HV + ++ + Sbjct: 152 --GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAG 203 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.8 bits (71), Expect = 0.64 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 22/73 (30%) Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL----LRGSKFMKEDR----- 473 EEQR R + L S E+ W +EK A + DL R S+ +++++ Sbjct: 92 EEQRKRLQ--ELDAASKVMEQEW---REK--AKK----DLEEWNQRQSEQVEKNKINNRI 140 Query: 474 --KVLCQKPPIDL 484 K Q+P D+ Sbjct: 141 ADKAFYQQPDADI 153 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 31.7 bits (71), Expect = 0.68 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 29/105 (27%) Query: 450 EKYGATQF----IGYDLLRGSKFMKEDRKVLCQKPPI--DLTNGV----------SSIVK 493 EK G F + ++LL + + LCQK P+ DL G+ + + K Sbjct: 690 EKMGVRTFSQKEMAFNLL---GLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRK 746 Query: 494 AIVQQGEI-----VEEA-----VSGQKVEVVFDQTPFYAEAGGQL 528 +V+ E+ +E A V+G + + Q A QL Sbjct: 747 ELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQL 791 >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Score = 31.3 bits (70), Expect = 1.1 Identities = 54/351 (15%), Positives = 110/351 (31%), Gaps = 32/351 (9%) Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 L L S E G + VLLD L KD +V LP++I + Sbjct: 906 HTLDPSLLESGSEILGDLKLQ--VLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRI 963 Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR---AHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I A+ ID + + +L + G E I + ++ + Sbjct: 964 IQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLR 1023 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 L ++ + ++ ++ Q L+N + ++++V GE+V ++ Q + Q Sbjct: 1024 SRL-ATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGV-LAAQSIGEPATQMTL 1081 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 G + G+ V + + +++ L + Sbjct: 1082 NTFH--FAGVASKKVTSGVP------------RLKEILNVAKNMKTPSLTVYLEPGHAAD 1127 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ A + T L S + PD + + I +++ Sbjct: 1128 QE-----QAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAE 1182 Query: 641 DIIAQNLPVVTRI------MNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 Q P + R+ MN +D + + + + V+ E D Sbjct: 1183 QSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDND 1233 >1br2_A Myosin; muscle protein; HET: ADP; 2.90A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1br1_A* 1br4_A* Length = 791 Score = 29.7 bits (66), Expect = 2.6 Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 34/189 (17%) Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 G I FD I G IE + L + +Q K ER + G Sbjct: 247 FGKFIRINFDVTGYIVGA----------NIETYLLEKSRAIRQAKDERTFHIFYYLIAGA 296 Query: 229 GLERMATVLQEKTNNY--------------DIDLFKHLIQASEQVTGMKYEGNNIVNHRV 274 + +L E NNY D ++F+ ++A + + E +I+ Sbjct: 297 SEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVS 356 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMR----------RAMCYARLLGYTEPLMMH 324 V L + F A+ +++ R++ R+ + + Sbjct: 357 SVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKA 416 Query: 325 LLPALCTEM 333 Sbjct: 417 QTKEQADFA 425 >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens} Length = 530 Score = 28.8 bits (64), Expect = 5.8 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 + +K I +++ + D + I Q P+ R+++R Sbjct: 416 SALIWTNKAIQKKDIEFLNDIKDLKIDQKTPL--RVLHR 452 >3cjh_A Mitochondrial import inner membrane translocase subunit TIM13; cyclic heterohexamer, chaperone, metal-binding, mitochondrion; 2.60A {Saccharomyces cerevisiae} Length = 64 Score = 28.5 bits (64), Expect = 6.5 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 11/51 (21%) Query: 173 SEIFFDQGECIPGGLPGSSEEG-------ERYIEIWNLVFMQFEQQNKQER 216 SE F++ C+ P ++ +Y+ WN++ + + + Sbjct: 13 SENCFEK--CLTS--PYATRNDACIDQCLAKYMRSWNVISKAYISRIQNAS 59 >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Score = 28.4 bits (62), Expect = 7.0 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 12/120 (10%) Query: 759 RVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---- 812 ++E + E + V + K D H ++ + + + Sbjct: 204 QIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFH 263 Query: 813 ---MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 + L I+ +L + + ++ + ++L D + A K G GGG Sbjct: 264 TKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGGA---GKSSGSGGGD 320 >1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P Length = 463 Score = 28.4 bits (62), Expect = 7.8 Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 26/114 (22%) Query: 55 KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 KP + + R+G +DL+N G N +TF G + Sbjct: 28 KPSFTVDQVADQLTRSGASWHDLNNDGVINLTYTFLT---APPVGYASRGLGT------- 77 Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLS---------ADKIIRITTNDN 159 +F Q+ + + + W ++ ++ D + Sbjct: 78 FSQFSALQKEQA-------KLSLESWADVAKVTFTEGPAARGDDGHMTFANFSA 124 >2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90 Score = 27.9 bits (62), Expect = 9.1 Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 10/58 (17%) Query: 182 CIP----GGLPGSSEEG------ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 C+P E +Y++I + + + + Q+ ++ ++ +G Sbjct: 33 CVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDEELMKRVQQSSGPA 90 >1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A Length = 233 Score = 28.0 bits (62), Expect = 9.5 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 16/94 (17%) Query: 225 DTGMGLERMATVLQEKTNNYDIDLF---KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281 D G G R+ + Y+ D F H +++ ++ ++ D + Sbjct: 11 DYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKI---------LLPGGLVKDRVEK 61 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 +A I G + I++ + + LL Sbjct: 62 ----LAYDIHRTYFGEELHIICILKGSRGFFNLL 91 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.136 0.393 Gapped Lambda K H 0.267 0.0584 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 7,712,573 Number of extensions: 378514 Number of successful extensions: 1198 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1142 Number of HSP's successfully gapped: 38 Length of query: 898 Length of database: 5,693,230 Length adjustment: 101 Effective length of query: 797 Effective length of database: 3,244,586 Effective search space: 2585935042 Effective search space used: 2585935042 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (27.6 bits)