RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(898 letters)
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 294 bits (753), Expect = 3e-80
Identities = 127/242 (52%), Positives = 170/242 (70%), Gaps = 8/242 (3%)
Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
+ IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T
Sbjct: 3 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62
Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
+ QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L +
Sbjct: 63 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122
Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
+LY++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 182
Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
G ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K +
Sbjct: 183 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 234
Query: 243 NY 244
N+
Sbjct: 235 NF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 178 bits (452), Expect = 2e-45
Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 6/223 (2%)
Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
+ID+ LIQ E+V+G KY V RVI DHLR+ +F I+DG++P+NEGRGYV+R
Sbjct: 1 EIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIR 60
Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
RI+RRAM + LG P + + + M YPEL ++ ++ ++ E++RF KTL
Sbjct: 61 RILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTL 120
Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
G+ + V+ ++ + L+G F YDT+G P+D++ +I +G GID+ F
Sbjct: 121 KAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKG-LGIDLEGFQC 179
Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
LEEQR RAR H + + ++ LKE + F+G L
Sbjct: 180 ELEEQRERARKHFKV-EAKKVKPVYSHLKELGKTSAFVGAAAL 221
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 96.7 bits (240), Expect = 7e-21
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 26/151 (17%)
Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKS 634
D+ R +L H+ HLL H L+ +LG Q GS ++ + R+D+ + + + +
Sbjct: 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLN-KYKEQ 59
Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
I N + + V + ++R V C
Sbjct: 60 IISLFNKYVDEGGEVKIWWEGD--------------RRYTQIRDFEVI----------PC 95
Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
GGTHV EI + + SSI G +R+E
Sbjct: 96 GGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 126
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 91.5 bits (226), Expect = 3e-19
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Query: 586 NHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
HSA H++ A+ +LGS S + + V + + E++ IE N+ +
Sbjct: 8 THSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67
Query: 645 QNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
+N P+ + RE+A G + VR++ V + + C H +TG
Sbjct: 68 ENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIED--WNVNACNKEHTKTTG 125
Query: 704 EIMLLYIVS-ESSIRAGIRRIE 724
EI + I G+ I
Sbjct: 126 EIGPIKIRKVRFRKSKGLLEIH 147
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 82.5 bits (203), Expect = 1e-16
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
+ HS HL+ HA+ + G+ G + G +D + I+S + + IE + I+
Sbjct: 11 LRHSTAHLMAHAIKRLYGNVKFGVGP-VIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 69
Query: 645 QNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
+N+ + ++++R++A L+ D + Y G LC G HV
Sbjct: 70 ENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTL---YSQGDFT--DLCRGVHV 124
Query: 700 SSTGEIMLLYIVSESSIR----AGIRRIEAITG 728
ST +I ++S + + + ++ I G
Sbjct: 125 PSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYG 157
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 62.1 bits (150), Expect = 2e-10
Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
I HS HLL HA+ L H + +G +DV + +T +++++E ++++
Sbjct: 9 IRHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 67
Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSS 701
+N V+ + ++ +A + A K + ++ + + G +C G HV +
Sbjct: 68 KNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPN 127
Query: 702 TGEIMLLYIVSESS 715
++ +
Sbjct: 128 MRFCHHFKLMKTAG 141
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 57.9 bits (140), Expect = 3e-09
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
E + + ++ DQT FY GGQ D G G +++ DV K EG V H +
Sbjct: 17 EAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEG-NVWHVV 71
Query: 560 VERGILRTEMSLVLTI 575
E + + L I
Sbjct: 72 KEPEKFKVGDEVELKI 87
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId:
9606]}
Length = 89
Score = 30.8 bits (70), Expect = 0.51
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 456 QFIGYDLLRGSKFMKEDRKVLC-----QKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
Q Y++ R S F K K L ++ +S I K V GE+VEEA
Sbjct: 5 QLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFV--GEVVEEA 57
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 30.1 bits (67), Expect = 0.84
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 24/130 (18%)
Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
G I FD I G IE + L + +Q K ER + G
Sbjct: 169 FGKFIRINFDVTGYIVGA----------NIETYLLEKSRAIRQAKDERTFHIFYYLIAGA 218
Query: 229 GLERMATVLQEKTNNY--------------DIDLFKHLIQASEQVTGMKYEGNNIVNHRV 274
+ +L E NNY D ++F+ ++A + + E +I+
Sbjct: 219 SEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVS 278
Query: 275 IVDHLRSSSF 284
V L + F
Sbjct: 279 SVLQLGNIVF 288
>d1sg7a1 a.239.1.1 (A:22-96) Putative cation transport regulator
ChaB {Escherichia coli [TaxId: 562]}
Length = 75
Score = 27.5 bits (61), Expect = 4.4
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKY 452
FN A ++ + + T K+ W ++K +Y
Sbjct: 28 FNSAWDQYKDKEDRRDDASREETAHKVAWAAVKHEY 63
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli
[TaxId: 562]}
Length = 168
Score = 26.7 bits (59), Expect = 9.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA 136
A+ ++W L + +D+RR+ +D EA
Sbjct: 74 HALHVSWSNLQDQQSIDERRVTFLGFDAATEA 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,318,660
Number of extensions: 163034
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 13
Length of query: 898
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 805
Effective length of database: 1,130,706
Effective search space: 910218330
Effective search space used: 910218330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)