RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR01184

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230
 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 29/207 (14%)

Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
           LK VN T+Q GE I+L+G SG GK+++ +LI     P SG V +EG  +     + +  F
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 366 IAWVPQHPIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
                 + ++   +V +NI  A+        + +  A++ +    +G L    D   G  
Sbjct: 61  ----QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVG-LTEAADKRPGQ- 114

Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI---ENEQ----KIWKVLREQRRGR 476
              LS G  QR+AIARA+     +LLLDE   ALD     N Q    +IW     +    
Sbjct: 115 ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW-----EEHRV 166

Query: 477 TTIFASHRLSAIQDADMVFVLHDQVIV 503
           T +  +H      D D   +L D+V++
Sbjct: 167 TVLMVTH------DVDEALLLSDRVVM 187