RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR01184
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230
Score = 73.7 bits (181), Expect = 1e-13
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 29/207 (14%)
Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365
LK VN T+Q GE I+L+G SG GK+++ +LI P SG V +EG + + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 366 IAWVPQHPIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
+ ++ +V +NI A+ + + A++ + +G L D G
Sbjct: 61 ----QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVG-LTEAADKRPGQ- 114
Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI---ENEQ----KIWKVLREQRRGR 476
LS G QR+AIARA+ +LLLDE ALD N Q +IW +
Sbjct: 115 ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW-----EEHRV 166
Query: 477 TTIFASHRLSAIQDADMVFVLHDQVIV 503
T + +H D D +L D+V++
Sbjct: 167 TVLMVTH------DVDEALLLSDRVVM 187