RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR02203
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571
Score = 272 bits (697), Expect = 2e-73
Identities = 158/533 (29%), Positives = 269/533 (50%), Gaps = 20/533 (3%)
Query: 8 KRDVSLYLWGMFVLLLLAV----ASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFN 63
RD S+ W V++ LAV S + Y + + +++ ++ + K++ L SFF+
Sbjct: 47 GRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD 106
Query: 64 SRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTL 123
+ G + S + D+E++ + +++R L G ++ S +L+LIVV ++ +
Sbjct: 107 RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV 166
Query: 124 FLMVMIKFSR------KKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQS 177
++M + S+ K+ + + + ++ V++ F R +D S
Sbjct: 167 LSILMRRVSKRLRRISKEIQNSMGQ---VTTVAEETLQGYRVVKLFGGQAYETRRFDAVS 223
Query: 178 QKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIF 237
+ + ++ + + S + +V I + G F+
Sbjct: 224 NRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIAL 283
Query: 238 FASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSP-VLGSVSFRSVSFV 296
++S + + +A+ L L LD + T G V FR+V+F
Sbjct: 284 IRPLKSLTNVNAPMQRGLAAAESLFTL----LDSPPEKDTGTRAIERARGDVEFRNVTFR 339
Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356
YPG+ R L +++ ++PGET+ALVG SG+GK+++ +LI RFY+P SG + ++G DL
Sbjct: 340 YPGRD-RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398
Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENG 415
+L +RR +A V Q ++ ++ +NIA G A R EI+ A A A +F+ L G
Sbjct: 399 YTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG 458
Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRG 475
DT +G+ V LS GQ QR+AIARA+LKD+PIL+LDE SALD E+E+ + L +G
Sbjct: 459 LDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518
Query: 476 RTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMSQ 528
RTT+ +HRLS I+ AD + V+ D IVE+G H ELL ++G YA H + +
Sbjct: 519 RTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQFRE 571