RPSBLAST alignment for GI: 254780193 and conserved domain: TIGR01189
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198
Score = 62.8 bits (153), Expect = 2e-10
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
R + + ++FT+ GE + + G +G GKT++ ++ P SG V G L +E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEP 71
Query: 363 RRFIAWVPQHPIMIAA-SVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420
R I ++ P + S +N+ H + + A +G G++ +
Sbjct: 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR-----TIEDALAAVGL--TGFEDLP 124
Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRGRTTI 479
A LS GQ +R+A+AR L +P+ +LDE +ALD + +LR RG +
Sbjct: 125 ---AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVL 181
Query: 480 FASH 483
+H
Sbjct: 182 LTTH 185