RPSBLAST alignment for GI: 254780193 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 39.8 bits (93), Expect = 0.002
Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 27/202 (13%)
Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
RS + T+ +VG +GAGKT+I IE + L
Sbjct: 10 RSFHERSEIEFFSPLTL-IVGQNGAGKTTI----------------IEALKYALTGELPP 52
Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422
I + + +A K+ LA I C + + L D
Sbjct: 53 NSKGGAHDPKLIREGEVRAQ-VKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLD 111
Query: 423 GAVHLSTGQ------IQRIAIARAILKDSPILLLDEMGSALDIEN-EQKIWKVLREQRR- 474
S G+ I R+A+A + IL LDE + LD EN E+ + +++ E++
Sbjct: 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ 171
Query: 475 -GRTTIFASHRLSAIQDADMVF 495
I +H + AD ++
Sbjct: 172 KNFQLIVITHDEELVDAADHIY 193