RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] (528 letters) >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 433 bits (1115), Expect = e-122 Identities = 209/515 (40%), Positives = 300/515 (58%), Gaps = 21/515 (4%) Query: 18 MFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKD 77 + V L+LA+ ++ R+Y T LGER++ ++R V A +I LSPSFF+ GE+ S L D Sbjct: 65 LVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTD 124 Query: 78 TERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKF------ 131 T ++++IG +S+ LR+ LM G + MMF+ S KL+ +V+ V L L+ ++ F Sbjct: 125 TTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRK 184 Query: 132 -SRKKTNTL-----YADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFL 185 SR+ + + YA E + ++ +Q+F + +K Y+ Sbjct: 185 LSRESQDRIADAGSYAGE---------TLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235 Query: 186 RSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCL 245 + R + VI V I V +GAH V +M G L +FV YA + SI + Sbjct: 236 QRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLS 295 Query: 246 GFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSI 305 G + +A + RL EL+ + DI +P +T P P+ G + F V+F YP + + Sbjct: 296 EVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA 355 Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365 L +N TV+PGET+ALVG SGAGK+++F L+LRFYDP SG + ++G+DLR L E+R Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 Query: 366 IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAV 425 +A VPQ P++ AASV +NI G P AT +E++ AA A AHEFI L GYDT LG+ V Sbjct: 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGV 475 Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485 LS GQ QRIAIARAILKD+PILLLDE SALD E+EQ + + L +GRTT+ +HRL Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL 535 Query: 486 SAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAH 520 + + AD + V+ IV +G H EL+ K G YA Sbjct: 536 ATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYAR 570 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 294 bits (754), Expect = 4e-80 Identities = 156/526 (29%), Positives = 261/526 (49%), Gaps = 43/526 (8%) Query: 18 MFVLLLLAVASS----LRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSI 73 +F + LL++ASS LR R+ L ++ D+ +++ FF+ GE+ S Sbjct: 204 IFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSR 263 Query: 74 LVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR 133 L DT+ + + + ++++LR+L+M G + M +S +L++ VTL + ++ + Sbjct: 264 LSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTM-----VTLINLPLVFLAE 318 Query: 134 KKTNTLY-ADEKKLLNIF---SDMIKSVM----VLQSF-NAGKEAIRLYDIQSQKTYKGF 184 K Y ++L + + + + ++SF EA R +K Sbjct: 319 KVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASR---------FKEA 369 Query: 185 LRS--ALIRTCIACFVIFFVS---CGIFIVFLI---GAHYVATAEMPRGKLAEFVVYAFI 236 L L + + + + G+ I L+ G V T ++ G L F++Y Sbjct: 370 LEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQ 429 Query: 237 FFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFV 296 ++R G+ QA+ + ++ E + K +I + P + G + F+ VSF Sbjct: 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA--PLNLEGLIEFQDVSFS 487 Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356 YP + +LK + FT+ PGE +ALVG SG+GK+++ +L+ Y P G V ++G+ L Sbjct: 488 YPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ 547 Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416 + R +A V Q P++ + SV +NIA G +EI AA A AH+FI NGY Sbjct: 548 YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGY 607 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI--WKVLREQRR 474 DT +G+ LS GQ QRIAIARA+++ +L+LDE SALD E EQ + + R Sbjct: 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESR----SRA 663 Query: 475 GRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAH 520 RT + +HRLS ++ AD + VL +VE G H++L++ G Y H Sbjct: 664 SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 272 bits (697), Expect = 2e-73 Identities = 158/533 (29%), Positives = 269/533 (50%), Gaps = 20/533 (3%) Query: 8 KRDVSLYLWGMFVLLLLAV----ASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFN 63 RD S+ W V++ LAV S + Y + + +++ ++ + K++ L SFF+ Sbjct: 47 GRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD 106 Query: 64 SRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTL 123 + G + S + D+E++ + +++R L G ++ S +L+LIVV ++ + Sbjct: 107 RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV 166 Query: 124 FLMVMIKFSR------KKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQS 177 ++M + S+ K+ + + + ++ V++ F R +D S Sbjct: 167 LSILMRRVSKRLRRISKEIQNSMGQ---VTTVAEETLQGYRVVKLFGGQAYETRRFDAVS 223 Query: 178 QKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIF 237 + + ++ + + S + +V I + G F+ Sbjct: 224 NRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIAL 283 Query: 238 FASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSP-VLGSVSFRSVSFV 296 ++S + + +A+ L L LD + T G V FR+V+F Sbjct: 284 IRPLKSLTNVNAPMQRGLAAAESLFTL----LDSPPEKDTGTRAIERARGDVEFRNVTFR 339 Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356 YPG+ R L +++ ++PGET+ALVG SG+GK+++ +LI RFY+P SG + ++G DL Sbjct: 340 YPGRD-RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398 Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENG 415 +L +RR +A V Q ++ ++ +NIA G A R EI+ A A A +F+ L G Sbjct: 399 YTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG 458 Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRG 475 DT +G+ V LS GQ QR+AIARA+LKD+PIL+LDE SALD E+E+ + L +G Sbjct: 459 LDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518 Query: 476 RTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMSQ 528 RTT+ +HRLS I+ AD + V+ D IVE+G H ELL ++G YA H + + Sbjct: 519 RTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQFRE 571 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 268 bits (688), Expect = 2e-72 Identities = 146/429 (34%), Positives = 234/429 (54%), Gaps = 28/429 (6%) Query: 105 MMFVISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYAD-EKKLLNIF---SDMIKSVMVL 160 + ++ +LSL++V + ++ + + +KT A E+ ++F SD I +V V+ Sbjct: 150 LALFMNWRLSLVLVVLGIVYTL-ITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVV 208 Query: 161 QSFN---AGKEAIR-----LYDIQSQKTYKGFLRSALIR--TCIACFVIFFVSCGIFIVF 210 QS+N A +A+R L Q L S L R + I + + Sbjct: 209 QSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTIT----------MLAIL 258 Query: 211 LIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLD 270 ++GA V ++ G++ FV +A + + + FI + A L E+ D Sbjct: 259 VLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD 318 Query: 271 ISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKT 330 + P + V G+V F VSF Y R +++V+F +PG+T+A+VG +GAGK+ Sbjct: 319 VRDPPGAID-LGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKS 375 Query: 331 SIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPH 390 ++ +L+ R +DP SG + I+G D+R ++ +RR IA V Q + S+ DNI +G P Sbjct: 376 TLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435 Query: 391 ATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLL 450 AT +E++ AA AQAH+FI +GYDT++G+ LS G+ QR+AIARA+LKD PIL+L Sbjct: 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495 Query: 451 DEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEE 510 DE SALD+E E K+ L E +GRTT +HRLS +++AD + V + +VE G +E Sbjct: 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 Query: 511 LLKKSGFYA 519 L+ + G +A Sbjct: 556 LVARGGRFA 564 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 249 bits (637), Expect = 2e-66 Identities = 175/568 (30%), Positives = 281/568 (49%), Gaps = 90/568 (15%) Query: 8 KRDVSLYLWGMFVLLLL----AVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFN 63 K D S+ W V++ L + S + YC + + ++++ M+R + ++ + SFF+ Sbjct: 58 KADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD 117 Query: 64 SRGHGEIFSILVKDTERI-----KAIIGI---GMSIVLRSLLMGFGAMCMMFVISIKLSL 115 + G + S + D+E++ A+I + G SI+ G MMF S +LSL Sbjct: 118 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASII--------GLFIMMFYYSWQLSL 169 Query: 116 IVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSD-------MIKSVMVLQSFNAGKE 168 I++ ++ + + I+ K+ + K + N M+K + F + Sbjct: 170 ILI-VIAPIVSIAIRVVSKRFRNI---SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEV 225 Query: 169 AIRLYDIQS----QKTYKGFLRSAL---IRTCIACFVIFFVSCGIFIVFLIGAHYVATAE 221 + +D S Q+ K S++ I IA + FV Y A+ Sbjct: 226 ETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVL------------YAAS-- 271 Query: 222 MPRGKLAEFVVYAFIFFASIRSCL--GFIGGI-SQAIASLRRLREL-----------IVC 267 F S+ L G I + S IA +R L+ L C Sbjct: 272 ----------------FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315 Query: 268 K-----LDISSPISSRTF-PSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIAL 321 + LD+ G + FR+V+F YPGK + L+N+NF + G+T+AL Sbjct: 316 QTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPA-LRNINFKIPAGKTVAL 374 Query: 322 VGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVY 381 VG SG+GK++I +L+ RFYD G + ++G DLR +L +R +A V Q+ + ++ Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 Query: 382 DNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARA 440 +NIA +R++I+ AA +A A +FI ++NG DT++G+ V LS GQ QRIAIARA Sbjct: 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 Query: 441 ILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQ 500 +L+DSPIL+LDE SALD E+E+ I L E ++ RT++ +HRLS I+ AD + V+ D Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG 554 Query: 501 VIVEKGVHEELLKKSGFYAHYHILGMSQ 528 IVE+G H ELL ++G YA H + Q Sbjct: 555 EIVERGTHAELLAQNGVYAQLHKMQFGQ 582 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 230 bits (589), Expect = 5e-61 Identities = 160/534 (29%), Positives = 265/534 (49%), Gaps = 41/534 (7%) Query: 7 DKRDVS--LYLWGMF----VLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPS 60 K DV L LW F + + VA A L + + +II + S Sbjct: 51 SKSDVLPTLALWAGFGVFNTIAYVLVARE-----ADRLAHGRRATLLTEAFGRIISMPLS 105 Query: 61 FFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMM----FVISIKLSLI 116 + RG L++ TE + G+ + +R L F A+ ++ F + +LS++ Sbjct: 106 WHQQRGTSNALHTLLRATE---TLFGLWLEF-MRQHLATFVALFLLIPTAFAMDWRLSIV 161 Query: 117 VVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIF---SDMIKSVMVLQSFNAGKEAIRLY 173 ++ + L++++ ++ N A E N+F SD I +V V+ S+N + Sbjct: 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSAL 221 Query: 174 DIQSQKTYKG--------FLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRG 225 + L S L R + + + +IG V E+ G Sbjct: 222 KQFTNNLLSAQYPVLDWWALASGLNRMA--------STISMMCILVIGTVLVIKGELSVG 273 Query: 226 KLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFPSPVL 285 ++ F+ +A + + GFI I +A A L +L P + P+ V Sbjct: 274 EVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPN-VK 332 Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345 G+V FR ++F + S+ + +V+F + G+T+A+VG +GAGKT++ +L+ R YDP G Sbjct: 333 GAVEFRHITFEFANSSQG--VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405 + I+GID+ ++ E +R+ IA V Q + S+ +NI +G AT +E+ AA A A Sbjct: 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAA 450 Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 H+FI NGYDT++G+ LS G+ QR+AIARAILK++PIL+LDE SALD+E E ++ Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510 Query: 466 WKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519 + R+ RTT +HRLS +++AD+V L ++EKG +EL++K G + Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFY 564 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 229 bits (585), Expect = 2e-60 Identities = 146/510 (28%), Positives = 243/510 (47%), Gaps = 50/510 (9%) Query: 15 LWGMFVLLLLAVASSLRYYCATMLGERMILF--------MQRDVIAKIIKLSPSFFNSRG 66 L L LAV LR LGER ++ ++A + L P + R Sbjct: 43 LLPALGALALAVL--LRA-LLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRP 99 Query: 67 HGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVI------SIKLSLIVVSI 120 GE+ ++ E ++A+ G + + +L + ++ + S + L+ + Sbjct: 100 SGELATLA---LEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPL 156 Query: 121 VTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNAGK-EAIRLYDIQSQK 179 + +F++++ ++ +A +L F D ++ + L+ F K +A + + Sbjct: 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEE- 215 Query: 180 TYKGFLRSALIRTC-IA---CFVI-FFVSCGIFIVFL-IGAHYVATAEMPRGKL----AE 229 R +R IA V+ F + + +V + IG +A G L Sbjct: 216 -----YRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLA------GDLDLATGL 264 Query: 230 FV-VYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRT-FPSPVLGS 287 FV + A F+ +R + +A+ L + LD P++ + + S Sbjct: 265 FVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAV----LDAPRPLAGKAPVTAAPAPS 320 Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + F +S YPG+ L+ V+FTV PGE +ALVG SGAGK+++ +L+L F DP GS+ Sbjct: 321 LEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379 Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407 + G+ L + R IAWVPQHP + A ++ +NI + P A+ EI+ A A E Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDE 439 Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467 F+ L G DT++G+G LS GQ QR+A+ARA L+D+P+LLLDE + LD E E + + Sbjct: 440 FVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE 499 Query: 468 VLREQRRGRTTIFASHRLSAIQDADMVFVL 497 LR +GRT + +HRL+ + AD + VL Sbjct: 500 ALRALAQGRTVLLVTHRLALAERADRIVVL 529 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 218 bits (557), Expect = 3e-57 Identities = 101/264 (38%), Positives = 159/264 (60%), Gaps = 4/264 (1%) Query: 252 SQAIASLRRLRELIVCKLDISSPISSRTFPSPVL-GSVSFRSVSFVYPGKSKRSILKNVN 310 QA +L+ L EL+ +L + P +R P L G + FR+VSF YPG + L NV+ Sbjct: 429 QQAKTALQSLDELM--QLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVS 485 Query: 311 FTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVP 370 T++PGE +A++G G+GK+++ L+L Y P GSV ++G+D+R + ++RR I +VP Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 Query: 371 QHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTG 430 Q P + ++ DNIA+G P+A +EI AA LA EF+ +G D +G+ LS G Sbjct: 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 Query: 431 QIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQD 490 Q Q +A+ARA+L+D PILLLDE SA+D +E++ L+ G+T + +HR S + Sbjct: 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL 665 Query: 491 ADMVFVLHDQVIVEKGVHEELLKK 514 D + V+ + IV G +++L+ Sbjct: 666 VDRIIVMDNGRIVADGPKDQVLEA 689 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 214 bits (547), Expect = 4e-56 Identities = 158/538 (29%), Positives = 249/538 (46%), Gaps = 64/538 (11%) Query: 17 GMFVLLLLAVA-SSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILV 75 M + + A LR Y L R+ + + + ++ L +F SR G+ + V Sbjct: 184 AMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVA-RV 242 Query: 76 KDTERIKAII-GIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVV-SIVTLFLMVMI---- 129 ++ E+I+ + G +++VL LL + +MF S L+ +V+ S+V L+ + Sbjct: 243 RELEQIRNFLTGSALTVVL-DLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPI 301 Query: 130 -------KFSRKKTNTLY--------------ADEKKLLNIFSDMIKSVMVLQSFNAGKE 168 KF R T + A E + N + + A Sbjct: 302 LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLA-----AYVAASFR 356 Query: 169 AIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLA 228 L +I Q LI+ +++F GAH V + G+L Sbjct: 357 VTNLGNIAGQAI-------ELIQKLTFAILLWF-----------GAHLVIGGALSPGQLV 398 Query: 229 EFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRT---FPSPVL 285 F + A + Q +L RL +++ +SP R+ P L Sbjct: 399 AFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDIL------NSPTEPRSAGLAALPEL 452 Query: 286 -GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344 G+++F ++ F Y S +L N+N ++PGE I +VG SG+GK+++ L+ R Y P Sbjct: 453 RGAITFENIRFRYAPDSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 Query: 345 GSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQ 404 G V ++G+DL + +RR + V Q ++ + S+ DNIA+ P A + + +AA LA Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAG 571 Query: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464 AH+FI L GY+T +G+ +LS GQ QRIAIARA++ + IL+ DE SALD E+E Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631 Query: 465 IWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYH 522 I + +RE RGRT I +HRLS ++ D + VL I E G HEELL G YA Sbjct: 632 IMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLW 689 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 210 bits (537), Expect = 7e-55 Identities = 86/215 (40%), Positives = 134/215 (62%), Gaps = 1/215 (0%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 + +NFT+ G+ IALVG SGAGKTS+ + +L F P GS++I GI+LR L E R+ Sbjct: 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK 423 Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424 ++WV Q+P + ++ DN+ +G P A+ +++Q A A EF+ L G DT +GD A Sbjct: 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHR 484 LS GQ QR+A+ARA+L+ +LLLDE ++LD +EQ + + L R +TT+ +H+ Sbjct: 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ 543 Query: 485 LSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519 L + D ++V+ D IV++G + EL + G +A Sbjct: 544 LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFA 578 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 208 bits (532), Expect = 2e-54 Identities = 93/225 (41%), Positives = 143/225 (63%), Gaps = 1/225 (0%) Query: 294 SFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGID 353 F YP + L+NVNFT++PG+ + + G +G+GK+++ SLI R +D G + I Sbjct: 320 QFTYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378 Query: 354 LRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLE 413 L L L+ R +A V Q P + + +V +NIA+G P AT++EI++ A LA H+ I L Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP 438 Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473 GYDT +G+ V LS GQ QRI+IARA+L ++ IL+LD+ SA+D E +I LR+ Sbjct: 439 QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498 Query: 474 RGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFY 518 GRT I ++HRLSA+ +A + V+ I ++G H++L ++SG+Y Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWY 543 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 201 bits (513), Expect = 4e-52 Identities = 144/517 (27%), Positives = 247/517 (47%), Gaps = 19/517 (3%) Query: 15 LWGMFVLLLL-AVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSI 73 L GM + LL V + L+ Y L ++ + M + I++L FF R G+I + Sbjct: 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDI-AS 255 Query: 74 LVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR 133 V+ +++ + ++ +M +M + L+LI ++ + ++ + SR Sbjct: 256 RVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSR 315 Query: 134 KKTNT---LYADEKKLLNIFSDMIKSVMVLQSFNAGKEA---IRLYDIQSQKTYKGFLRS 187 ++ + L D KL + ++S+ L++ +G E+ R Q+ K Sbjct: 316 RRVDANRRLQQDAGKLTGVAISGLQSIETLKA--SGLESDFFSRWAGYQA-KLLNAQQEL 372 Query: 188 ALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGF 247 ++ + S ++ ++G V ++ G L F F + + +GF Sbjct: 373 GVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGF 432 Query: 248 IGGISQAIASLRRLRELIVCKLDI----SSPISSRTFPSPVL-GSVSFRSVSFVYPGKSK 302 G + + L RL +++ +D ++ + PSP L G V R+++F Y + Sbjct: 433 GGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLE 491 Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 +++N + T+QPG+ +ALVG SG+GK++I L+ Y P SG + +GI + E + Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422 +A V Q + +V DN+ + P ++ A A H+ I GYD L + Sbjct: 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482 G +LS GQ QR+ IARA++++ IL+LDE SALD E E+ I LR RRG T I + Sbjct: 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR--RRGCTCIIVA 669 Query: 483 HRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519 HRLS I+D D + VL +V++G HEEL G YA Sbjct: 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYA 706 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 193 bits (493), Expect = 9e-50 Identities = 99/319 (31%), Positives = 172/319 (53%), Gaps = 24/319 (7%) Query: 214 AHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGG----ISQAIASLRRLRELIVCKL 269 A V P +A FV F A+ + L + G + Q IAS RR+ E+ K Sbjct: 267 AGGVGGNAQPGALIALFV---FAALAAFEA-LMPVAGAFQHLGQVIASARRINEITEQKP 322 Query: 270 DISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGK 329 +++ P +S + S++ +VSF YP + +LK ++ ++ GE +AL+G +G GK Sbjct: 323 EVTFPTTST--AAADQVSLTLNNVSFTYPD-QPQPVLKGLSLQIKAGEKVALLGRTGCGK 379 Query: 330 TSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP 389 +++ L+ R +DP G + + G + S +R+ I+ V Q + +A++ DN+ + P Sbjct: 380 STLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP 439 Query: 390 HATRKEIQNAAMLAQAHEFIGCLEN------GYDTILGDGAVHLSTGQIQRIAIARAILK 443 +A+ + + +L Q +G LE G + LG+G LS G+ +R+ IARA+L Sbjct: 440 NASDEAL--IEVLQQ----VG-LEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492 Query: 444 DSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503 D+P+LLLDE LD E E++I ++L E + +T + +HRL+ ++ D + V+ + I+ Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552 Query: 504 EKGVHEELLKKSGFYAHYH 522 E+G H+ELL + G Y Sbjct: 553 EQGTHQELLAQQGRYYQLK 571 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 189 bits (482), Expect = 1e-48 Identities = 133/511 (26%), Positives = 252/511 (49%), Gaps = 19/511 (3%) Query: 18 MFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKD 77 + ++ + S ++ + +LG+R+ + + I + +L SFF++R GEI S Sbjct: 203 IIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDA 262 Query: 78 TERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSIVTLFLMVMIKFSR--KK 135 + I A+ +S+ L + + + ++ L L+ + + ++ +++I F R K Sbjct: 263 SSIIDALASTILSLFL-DMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNK 321 Query: 136 TNTLYADEKKLLNIFSDMIKSVMVLQSFNA-GKEAIRLYDIQSQKTYKGFLRSALIRTCI 194 N +LN S +I+ + +++ + EA R I S+ + +L + Sbjct: 322 LNHDAMQANAVLN--SSIIEDLNGIETIKSLTSEAERYSKIDSE--FGDYLNKSFKYQKA 377 Query: 195 -----ACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIG 249 A + + + I++ GA+ V ++ G+L F F + + + Sbjct: 378 DQGQQAIKAVTKLILNVVILW-TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQP 436 Query: 250 GISQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNV 309 + A + RL E+ + + + RT + + G + VS+ Y S IL ++ Sbjct: 437 KLQAARVANNRLNEVYLVDSEFINK-KKRTELNNLNGDIVINDVSYSYGYGSN--ILSDI 493 Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369 + T++ +VG SG+GK+++ L++ F+ SG + + G L+ + +R+FI ++ Sbjct: 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 Query: 370 PQHPIMIAASVYDNIAIGC-PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428 PQ P + + S+ +N+ +G + ++ EI A +A+ + I + GY T L + +S Sbjct: 554 PQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAI 488 GQ QRIA+ARA+L DS +L+LDE S LD E+KI L + +T IF +HRLS Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-KTIIFVAHRLSVA 672 Query: 489 QDADMVFVLHDQVIVEKGVHEELLKKSGFYA 519 + +D + VL I+E+G H+ELL ++GFYA Sbjct: 673 KQSDKIIVLDHGKIIEQGSHDELLDRNGFYA 703 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 184 bits (470), Expect = 4e-47 Identities = 130/487 (26%), Positives = 225/487 (46%), Gaps = 31/487 (6%) Query: 46 MQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCM 105 +Q V ++++L SFF G++ S +I+ I+ L S + + + Sbjct: 211 LQAAVWDRLLRLPVSFFRQYSTGDLAS-RAMGISQIRRILSGSTLTTLLSGIFALLNLGL 269 Query: 106 MFVISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFN- 164 MF S KL+L+ V + L + + E++LL + + S + +Q N Sbjct: 270 MFYYSWKLALVAV-ALALVAIAVTLVLGLLQVRK---ERRLLELSGKI--SGLTVQLING 323 Query: 165 ------AGKEAIRLYDI-----QSQKTYKGFLRSALIRTCIACF-VIFFVSCGIFIVFLI 212 AG E + +K L + I + F + V +F Sbjct: 324 ISKLRVAGAENRAFARWAKLFSRQRKLE---LSAQRIENLLTVFNAVLPVLTSA-ALFAA 379 Query: 213 GAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDIS 272 + A + G F F ++ + I I R + ++ ++ Sbjct: 380 AISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 Query: 273 SPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSI 332 ++T P + G++ V+F Y IL +V+ ++PGE +A+VG SG+GK+++ Sbjct: 440 E---AKTDPGKLSGAIEVDRVTFRY-RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTL 495 Query: 333 FSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHAT 392 L+L F P SGSV +G DL L ++ +RR + V Q+ +++ S+++NIA G P T Sbjct: 496 LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LT 554 Query: 393 RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452 E AA +A E I + G T++ +G LS GQ QR+ IARA+++ ILL DE Sbjct: 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512 SALD + + + L + R I +HRLS I++AD ++VL +V++G ++EL+ Sbjct: 615 ATSALDNRTQAIVSESLERLKVTRIVI--AHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672 Query: 513 KKSGFYA 519 + G +A Sbjct: 673 AREGLFA 679 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 181 bits (461), Expect = 4e-46 Identities = 97/266 (36%), Positives = 148/266 (55%), Gaps = 8/266 (3%) Query: 251 ISQAIASLRRLRELIVCKLDISSPISSRTFPSP-VLGSVSFRSVSFVYPGKSKRSILKNV 309 S A + +RL EL+ + P P P G +S +V+ V PG K+ L+ + Sbjct: 284 FSGARQAYKRLNELL-----ANYPSRDPAMPLPEPEGHLSVENVTIVPPG-GKKPTLRGI 337 Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369 +F +Q GE +A++G SG+GK+++ LI+ + P SGSV ++G DL+ E + I ++ Sbjct: 338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397 Query: 370 PQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLST 429 PQ + +V +NIA +A ++I AA LA HE I L +GYDT++G G LS Sbjct: 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG 457 Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLSAI 488 GQ QRIA+ARA+ D +++LDE S LD E EQ + ++ + RG T + +HR S + Sbjct: 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL 517 Query: 489 QDADMVFVLHDQVIVEKGVHEELLKK 514 D + VL D I G +E+L K Sbjct: 518 GCVDKILVLQDGRIARFGERDEVLAK 543 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 179 bits (455), Expect = 2e-45 Identities = 144/529 (27%), Positives = 255/529 (48%), Gaps = 63/529 (11%) Query: 21 LLLLAVASSLRYYCATMLGERMILFMQR---DVIAKIIKLSPSFFNSRGHGEIFSILVKD 77 + L +A+ L Y + + + +Q+ DV+ ++ S F+++ G++ S + D Sbjct: 72 VGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTND 131 Query: 78 TERIKAIIGIGMSIVLRSLLMGFGAMCM-MFVISIKLSLIVVSIVTLFLMVMIKFSRKKT 136 TE I+ + ++ VLRS + GAM + MF + +++L+ + I L+VM+ + R T Sbjct: 132 TEVIRDLYVTVVATVLRSAAL-IGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYST 190 Query: 137 NTLYADEKKLLNI---FSDMIKSVMVLQSFNA----GK---EAIRLYDIQSQKTYK--GF 184 + L +I F+++I + V+Q F G+ EA R + + +T + GF Sbjct: 191 PIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250 Query: 185 LRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFF------ 238 L L+ A + CG+ ++F G + V+YAFI + Sbjct: 251 LLRPLLSLFSA-----LILCGLLMLFGFS---------ASGTIEVGVLYAFISYLGRLNE 296 Query: 239 -----ASIRSCLGFIGGISQAIASLRRLRELIVCKL----DISSPISSRTFPSPVLGSVS 289 + +S L QA+ + R+ EL+ + P+ S G + Sbjct: 297 PLIELTTQQSML------QQAVVAGERVFELMDGPRQQYGNDDRPLQS--------GRID 342 Query: 290 FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349 +VSF Y + +L+N+N +V +ALVG +G+GK+++ SL++ +Y G + + Sbjct: 343 IDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 Query: 350 EGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFI 409 +G L LS +R+ +A V Q P+++A + N+ +G + +++ A Q E Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-RDISEEQVWQALETVQLAELA 459 Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469 L +G T LG+ +LS GQ Q +A+AR +++ IL+LDE + +D EQ I + L Sbjct: 460 RSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519 Query: 470 REQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFY 518 R T + +HRLS I +AD + VLH VE+G H++LL G Y Sbjct: 520 AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRY 568 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 172 bits (439), Expect = 1e-43 Identities = 109/454 (24%), Positives = 204/454 (44%), Gaps = 16/454 (3%) Query: 41 RMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGF 100 R + ++ V ++ +L+ + G++ L D + ++ + + ++ +L++G Sbjct: 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142 Query: 101 GAMCMMFVISIKLSLIVVSIVTLFLMVMIKFS----RKKTNTLYADEKKLLNIFSDMIKS 156 A+ + ++S+ +L++ + + L V S R L +L +D + Sbjct: 143 AAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDG 202 Query: 157 VMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHY 216 L ++ A A+ + ++ R+A A + + G Sbjct: 203 AADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPA 262 Query: 217 VATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPIS 276 VA + LA V+ F + +++ A+ R+ E+ P Sbjct: 263 VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEV----TGAKGPRP 318 Query: 277 SRTFPSP---VLGSVS--FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTS 331 P+ LG + R +SF YPG +L V+ + PGE +A++G SG+GK++ Sbjct: 319 EGVVPAAGALGLGKPTLELRDLSFGYPGSPP--VLDGVSLDLPPGERVAILGPSGSGKST 376 Query: 332 IFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA 391 + L+ DP G V ++G+ + L +E+RR I+ Q + +V DN+ +G P A Sbjct: 377 LLMLLTGLLDPLQGEVTLDGVSVSSLQ-DELRRRISVFAQDAHLFDTTVRDNLRLGRPDA 435 Query: 392 TRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLD 451 T +E+ A +++ L +G DT+LG+G LS G+ QR+A+ARA+L D+PILLLD Sbjct: 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 495 Query: 452 EMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485 E LD E ++ + L G+T + +H L Sbjct: 496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 140 bits (355), Expect = 7e-34 Identities = 111/484 (22%), Positives = 225/484 (46%), Gaps = 18/484 (3%) Query: 46 MQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCM 105 + +D++ ++ SFF G + + K+ + + ++I + + + SL GA + Sbjct: 1040 LHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA-LI 1098 Query: 106 MFVISIKLSLIVVSIVTLFLMVMIKF----SRKKTNTLYADEKKLLNIFSDMIKSVMVLQ 161 + +++ ++ +++ + L + +F SR+ + + F++ + V V++ Sbjct: 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIR 1158 Query: 162 SFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAE 221 +F + I D++ + K + S + +A + +C + L ++ Sbjct: 1159 AFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV--ISRHS 1216 Query: 222 MPRGKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISSRTFP 281 + G + V Y+ + + + I ++ RL+E + + I P Sbjct: 1217 LSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPP 1276 Query: 282 S--PVLGSVSFRSVSFVY-PGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338 S P G V FR+ Y +L+++N T+ GE + +VG +GAGK+S+ + R Sbjct: 1277 SGWPPRGRVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 Query: 339 FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TRKEI 396 + G + I+G+++ + L ++R I +PQ P++ + S+ N+ P + + +E+ Sbjct: 1335 INESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLD---PFSQYSDEEV 1391 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 A LA F+ L + D +G +LS GQ Q + +ARA+L+ + IL+LDE +A Sbjct: 1392 WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAA 1451 Query: 457 LDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516 +D+E + I +R Q T + +HRL+ I D V VL + E G LL++ G Sbjct: 1452 VDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG 1511 Query: 517 -FYA 519 FY+ Sbjct: 1512 IFYS 1515 Score = 109 bits (274), Expect = 2e-24 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 26/281 (9%) Query: 248 IGGISQAIASLRRLRELIVCK-LDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSIL 306 I I QA SL+RLR + + L+ S I RT S++ + +F + + L Sbjct: 597 ISSIVQASVSLKRLRIFLSHEELEPDS-IERRTIKPGEGNSITVHNATFTW-ARDLPPTL 654 Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFI 366 + F++ G +A+VG G GK+S+ S +L D G V ++G + Sbjct: 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-------------V 701 Query: 367 AWVPQHPIMIAASVYDNIAIGC---PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423 A+VPQ + S+ +NI G ++ ++ A+L + L +G T +G+ Sbjct: 702 AYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD----LEILPSGDRTEIGEK 757 Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQ--RRGRTTIF 480 V+LS GQ QR+++ARA+ ++ I L D+ SA+D + I+ V+ + + +T I Sbjct: 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL 817 Query: 481 ASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHY 521 +H +S + D++ V+ I E G ++ELL++ G +A + Sbjct: 818 VTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEF 858 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 120 bits (303), Expect = 7e-28 Identities = 69/186 (37%), Positives = 109/186 (58%), Gaps = 8/186 (4%) Query: 344 SGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403 SG + ++G+D+ +L+++R + V Q P++ S+Y+NI G ATR++++ A A Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 EFI L N YDT +G LS GQ QRIAIARA+L++ ILLLDE S+LD +E+ Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395 Query: 464 KIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHD-----QVIVEKGVHEELLK-KS 515 I K + + + +T I +HR+++I+ +D + V ++ + G HEELL + Sbjct: 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455 Query: 516 GFYAHY 521 G Y Y Sbjct: 1456 GVYKKY 1461 Score = 82.8 bits (204), Expect = 2e-16 Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 2/108 (1%) Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454 E+ + + H+F+ L + Y+T++G A LS GQ QRI+IARAI+++ IL+LDE Sbjct: 548 EVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607 Query: 455 SALDIENEQKIWKVLREQR--RGRTTIFASHRLSAIQDADMVFVLHDQ 500 S+LD ++E + K + + R TI +HRLS I+ A+ +FVL ++ Sbjct: 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 Score = 72.0 bits (176), Expect = 3e-13 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 1/103 (0%) Query: 283 PVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP 342 + + F++V F Y + I K++NFT+ G+T A VG+SG GK++I LI R YDP Sbjct: 378 KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 Query: 343 CSGSVEI-EGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNI 384 G + I + +L+ ++L+ R I V Q P++ + S+ +NI Sbjct: 438 TEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNI 480 Score = 63.5 bits (154), Expect = 1e-10 Identities = 89/368 (24%), Positives = 170/368 (46%), Gaps = 55/368 (14%) Query: 12 SLYLWGMFVLLLLAVASSLRYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGH--GE 69 SLY+ + + + + ++ +L+ Y ++GE++ M+R + I+ SFF+ H G Sbjct: 869 SLYI--LVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926 Query: 70 IFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSL----IVVSIVT-LF 124 + + + +D +K G+ +IV+ F ++F++S+ +S IV +++T + Sbjct: 927 LSAHINRDVHLLKT--GLVNNIVI------FTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978 Query: 125 LMVMIKFSRKKTNTLYAD-EKKLLN-------------IFSDMIKSVMVLQSF------- 163 + M F+ + T D EKK +N IF D S ++ ++F Sbjct: 979 FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKD--PSFLIQEAFYNMNTVI 1036 Query: 164 NAGKEAIRLYDIQSQKTY--KGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAE 221 G E I+ Y KG R L+ + + F S +FI A++ + Sbjct: 1037 IYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFS---QSAQLFINSF--AYWFGSFL 1091 Query: 222 MPRGKLA--EFV--VYAFIFFASIRSCLGFIGGISQ-AIASLRRLRELIVCK--LDISSP 274 + RG + +F+ ++ F+F S L + G S+ A S + LI+ K +D+ Sbjct: 1092 IRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDN 1151 Query: 275 ISSRTFPSPVL-GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIF 333 R + G + V+F Y + I K++ F+ +T A+VG++G+GK+++ Sbjct: 1152 GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM 1211 Query: 334 SLILRFYD 341 SL++RFYD Sbjct: 1212 SLLMRFYD 1219 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 120 bits (302), Expect = 1e-27 Identities = 80/267 (29%), Positives = 144/267 (53%), Gaps = 20/267 (7%) Query: 251 ISQAI---ASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILK 307 I+QA+ SL+RL EL++ + + P P L ++S ++ F + K++R L Sbjct: 578 ITQAVNANVSLKRLEELLLAEERVLLPNPPL---EPGLPAISIKNGYFSWDSKAERPTLS 634 Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIA 367 N+N V G +A+VG +G GKTS+ S +L P S + + IR +A Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVA 682 Query: 368 WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHL 427 +VPQ + A+V DNI G P + + + A H+ + L G T +G+ V++ Sbjct: 683 YVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHD-LDLLPGGDLTEIGERGVNI 741 Query: 428 STGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQRRGRTTIFASHRLS 486 S GQ QR+++ARA+ +S + + D+ SALD ++++ K ++++ RG+T + +++L Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLH 801 Query: 487 AIQDADMVFVLHDQVIVEKGVHEELLK 513 + D + ++H+ +I E+G +EEL Sbjct: 802 FLSQVDRIILVHEGMIKEEGTYEELSN 828 Score = 117 bits (296), Expect = 5e-27 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 14/240 (5%) Query: 283 PVLGSVSFRSVSFVYPGKSKRS----ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338 P GS+ F V Y R +L ++F + P E + +VG +GAGK+S+ + + R Sbjct: 1233 PSSGSIKFEDVVLRY-----RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR 1287 Query: 339 FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQN 398 + G + I+G D+ L ++R+ + +PQ P++ + +V N+ P + Sbjct: 1288 IVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLD---PFNEHNDADL 1344 Query: 399 AAMLAQAH--EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 L +AH + I G D + + + S GQ Q +++ARA+L+ S IL+LDE +A Sbjct: 1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAA 1404 Query: 457 LDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516 +D+ + I K +RE+ + T + +HRL+ I D D + VL +VE E LL G Sbjct: 1405 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 119 bits (300), Expect = 2e-27 Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 10/248 (4%) Query: 283 PVLGSVSFRSVSFVY-PGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341 P GS+ F V Y PG +L ++F V P E + +VG +GAGK+S+ + + R + Sbjct: 1230 PSRGSIKFEDVHLRYRPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE 1287 Query: 342 PCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM 401 G + I+ D+ L ++RR ++ +PQ P++ + +V NI P + + Sbjct: 1288 LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID---PFSEHNDADLWEA 1344 Query: 402 LAQAH--EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459 L +AH + I G D + +G + S GQ Q +++ARA+L+ S IL+LDE +++D+ Sbjct: 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV 1404 Query: 460 ENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK--SGF 517 + I + +RE+ + T + +HRL+ I D D + VL ++E +ELL + S F Sbjct: 1405 RTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAF 1464 Query: 518 YAHYHILG 525 + H G Sbjct: 1465 FRMVHSTG 1472 Score = 103 bits (259), Expect = 1e-22 Identities = 119/537 (22%), Positives = 237/537 (44%), Gaps = 76/537 (14%) Query: 13 LYLWGMFVLLLLAVASSLRYYCATM-LGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIF 71 +Y + +F + V +Y+ +G R+ + + K ++L+ + G++ Sbjct: 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVT 401 Query: 72 SILVKDTERIKAI-----------IGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVSI 120 +++ D ++ I I +S+VL +G V S+ SLI+ + Sbjct: 402 NMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLG--------VASLFGSLILFLL 453 Query: 121 VTLFLMVMIKFSRKKTNTLYADEKKLLNIFS-----DMIKSVMVLQSFNAGKEAIRLYDI 175 + L +++ K + L +K++ I D +K +SF + + IR ++ Sbjct: 454 IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEEL 513 Query: 176 QSQKTYKGFLRSALIRTCIACF-------VIFFVSCGIFIVFLIGAHYVATAEMPRGKLA 228 + R A + + F V+ VS G+F+ L+G G L Sbjct: 514 S-------WFRKAQLLSAFNSFILNSIPVVVTLVSFGVFV--LLG-----------GDLT 553 Query: 229 EFVVY-AFIFFASIRSCLGFIGG-ISQAI---ASLRRLRELIVCKLDISSPISSRTFPSP 283 + + FA +RS L + +SQ + SL+R+ EL++ + I + P Sbjct: 554 PARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPL---QP 610 Query: 284 VLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC 343 ++S ++ F + K+ + L ++N + G +A+VG +G GKTS+ S +L Sbjct: 611 GAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670 Query: 344 SGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403 S + IR +A+VPQ + A+V +NI G + + + + A Sbjct: 671 ETSSVV------------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTA 718 Query: 404 QAHEFIGCLENGYD-TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462 H+ L G D T +G+ V++S GQ QR+++ARA+ +S I + D+ SALD Sbjct: 719 LQHDLD--LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776 Query: 463 QKIW-KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSGFY 518 +++ ++++ +G+T + +++L + D + ++ + +I E+G EL K + Sbjct: 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLF 833 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 111 bits (280), Expect = 5e-25 Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 13/199 (6%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 + IL ++N T++ G+ A++G+SG+GK+++ ++I SG V + G + L+ ++ Sbjct: 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKA 70 Query: 363 RRF----IAWVPQHPIMI-AASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417 +F + ++ Q+ +I +V +N+ +G + + + +A E +G L Sbjct: 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG-LNLKLK 129 Query: 418 TILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRG 475 ++ LS G+ QR+A+ARAILKD P++L DE +LD +N ++ +L E G Sbjct: 130 QK-----IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184 Query: 476 RTTIFASHRLSAIQDADMV 494 +T I +H + AD V Sbjct: 185 KTIIIVTHDPEVAKQADRV 203 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 111 bits (280), Expect = 5e-25 Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 24/213 (11%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + F +VS YPG + L +V+ ++ GE + L G SGAGKT++ L+ P G V Sbjct: 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59 Query: 348 EIEGIDLRLLSLEEI---RRFIAWVPQ-HPIMIAASVYDNIAIG------CPHATRKEIQ 397 I G D+ L ++ RR I V Q ++ +VY+N+A+ ++ + Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119 Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 A +G LE+ D LS G+ QR+AIARAI+ P+LL DE L Sbjct: 120 AAL------RQVG-LEHKADAF----PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168 Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQ 489 D + ++I +L+ +RG T I A+H LS + Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 108 bits (271), Expect = 4e-24 Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 21/213 (9%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + F VS YPG + L N+NF + GE + LVG SGAGK++ LIL P G + Sbjct: 2 IRFEQVSKAYPG-GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60 Query: 348 EIEGIDLRLLSLEEI---RRFIAWVPQ-HPIMIAASVYDNIA-----IGCPHATRKEIQN 398 G DL L EI RR I V Q H ++ +VYDN+A IG P ++ Sbjct: 61 RFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVP---PRDANE 117 Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 A E +G + + LS G+ QR+AIARAI+ P+LL DE LD Sbjct: 118 RVSAAL--EKVGLEGKAHAL-----PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLD 170 Query: 459 IENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD 490 E + I ++ E RRG T + A+H ++ ++ Sbjct: 171 PELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 105 bits (263), Expect = 4e-23 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 12/233 (5%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 ++ +SF Y R L +V+FTV+PGE +AL+G +GAGK+++FSL+ R Y G Sbjct: 1 ALEVAGLSFAY---GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57 Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIM-IAASVYDNIAIGCPHATRKEIQNAAMLAQA 405 + + G DLR + R + V Q P + + SV N+ HA + A + Sbjct: 58 ISVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARERI 113 Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 + L G D L+ G +R+ IARA+L +LLLDE LD + I Sbjct: 114 AALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 Query: 466 WKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516 +R + +G + ++A+H + I+ D + VLH ++ G EL G Sbjct: 172 VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALG 224 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 101 bits (254), Expect = 4e-22 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 24/237 (10%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + +SF YP + + LK+V+F+V GE +A+VG +G+GK+++ L+ P +G++ Sbjct: 6 IRVEHISFRYPDAATYA-LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64 Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIA-----IGCPHATRKE-IQNA 399 + G+ L ++ ++RR + V Q+P + A+V D++A IG P E + A Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124 Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALD 458 +F L LS GQ QR+AIA +L P I++LDE S LD Sbjct: 125 LRQVGMEDF-----------LNREPHRLSGGQKQRVAIA-GVLALQPDIIILDEATSMLD 172 Query: 459 IENEQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLK 513 +++ + +R+ +++G T + +H L AD V V++ I+E+G EE+ K Sbjct: 173 PRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 100 bits (252), Expect = 7e-22 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 14/232 (6%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + +VSF YP S+ + LKNV+F + GE +A++G +G+GK++I ++ P SG + Sbjct: 8 IKVENVSFSYP-NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66 Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHA--TRKEIQNAAMLA 403 +I+GI + +L+EIR+ I + Q+P I A+V D+IA G + K+++ + Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK-DIIDD 125 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 A + G + L +LS GQ QR+AIA + + I++ DE S LD + ++ Sbjct: 126 LAKKV------GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 Query: 464 KIWKVLREQR--RGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLK 513 +I K++ + R R +T I +H + AD V V + ++ +G +E+L Sbjct: 180 EIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 100 bits (251), Expect = 9e-22 Identities = 80/247 (32%), Positives = 118/247 (47%), Gaps = 50/247 (20%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 V R +S + GK ++ N++ T+ GE + L+G SG GKT++ LI F P SG + Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71 Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQH----PIMIAASVYDNIAIG-----CPHATRKEIQN 398 ++G D+ + E R + V Q P M +V++N+A G P A EI Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHM---TVFENVAFGLRMQKTPAA---EITP 123 Query: 399 AAM--LAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGS 455 M L LE H LS GQ QR+AIARA++ +LLLDE S Sbjct: 124 RVMEALRMVQ-----LEE-----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173 Query: 456 ALD------IENEQKIWKVLREQRR-GRTTIFASH-RLSAIQDADMVFVLHDQVIVEKG- 506 ALD ++NE K QR+ G T +F +H + A+ +D + V+ D I + G Sbjct: 174 ALDYKLRKQMQNELK-----ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228 Query: 507 ---VHEE 510 ++EE Sbjct: 229 PREIYEE 235 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 99.9 bits (250), Expect = 2e-21 Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 29/233 (12%) Query: 290 FRSVSFVYPGKSKR-SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348 +++S V+P + L NV+ + GE ++G SGAGK+++ I P SG V Sbjct: 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63 Query: 349 IEGIDLRLLS---LEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCP----HATRKEIQNAA 400 ++G DL LS L + RR I + QH ++++ +V+DN+A+ P + EI+ A Sbjct: 64 VDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL--PLELAGTPKAEIK--A 119 Query: 401 MLAQAHEFIGCLENGYDTILGDGA----VHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + + E +G L D A LS GQ QR+AIARA+ + +LL DE SA Sbjct: 120 RVTELLELVG---------LSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170 Query: 457 LDIENEQKIWKVLRE-QRR-GRTTIFASHRLSAI-QDADMVFVLHDQVIVEKG 506 LD + I ++L++ R G T + +H + + + D V V+ +VE+G Sbjct: 171 LDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 97.8 bits (244), Expect = 6e-21 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 28/240 (11%) Query: 290 FRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349 ++S VYP + LKN+N + PGE +A++G SGAGK+++ I R +P SGS+ + Sbjct: 4 VENLSKVYPNGKQ--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 Query: 350 EGIDLRLLS---LEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHA-----------TRK 394 EG D+ L L ++RR I + QH +I +V +N+ G + + Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121 Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454 + + A A E +G + Y A LS GQ QR+AIARA+ + ++L DE Sbjct: 122 DKERA---LSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLILADEPI 173 Query: 455 SALDIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511 ++LD + +++ L+ + G T I H++ A + AD + L IV G EL Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 97.6 bits (243), Expect = 7e-21 Identities = 76/237 (32%), Positives = 128/237 (54%), Gaps = 19/237 (8%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI---LRFYDPCS 344 V F+ VSF YP SK+ L +++F++ G AL+G +G+GK++I LI L D + Sbjct: 6 VEFKHVSFTYP-DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64 Query: 345 GSVEIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPH--ATRKEIQNAA 400 + ++GI L ++ +IR + V Q+P + A+V D++A G + R E+ Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-- 122 Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALDI 459 ++ +G L D I + A +LS GQ QR+AIA IL P I++LDE S LD Sbjct: 123 IVRDVLADVGML----DYIDSEPA-NLSGGQKQRVAIA-GILAVEPKIIILDESTSMLDP 176 Query: 460 ENEQKIWKVLRE-QRRGRTTIFA-SHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514 +++I K++R+ +++ T+ + +H + AD V VL D ++ +G E+ K Sbjct: 177 AGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 97.6 bits (243), Expect = 8e-21 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 14/222 (6%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + F+ VS+ + ILK+++ + G +VG SGAGK+++ LI R DP GS+ Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60 Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407 I+G+D++ + + ++RR I V Q P + +V DNI G K + L Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYL----S 116 Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467 +G L Y T +LS G+ QR++IAR + + +LLLDE SALD + + I + Sbjct: 117 IVG-LNKEYATRDVK---NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172 Query: 468 VLRE--QRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKG 506 ++ + + T I+ +H + A + D L+ ++VE Sbjct: 173 LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 96.5 bits (240), Expect = 1e-20 Identities = 99/455 (21%), Positives = 202/455 (44%), Gaps = 39/455 (8%) Query: 60 SFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLMGFGAMCMMFVISIKLSLIVVS 119 + N+ G I + KD I ++ + + ++ L+ GA+ ++ V+ + + + Sbjct: 974 AVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 Query: 120 IVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSDMIKSVMVLQSFNA-GKEA---IRLYDI 175 + +F+M+ F R + + IFS +I S+ L + A G+++ + Sbjct: 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093 Query: 176 QSQKTYKGFLRSALIR----TCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFV 231 + T FL + +R FV FF++ FI + T + G++ + Sbjct: 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAV-TFIA-------IGTNQDGEGEVGIIL 1145 Query: 232 VYAFIFFASIRSCLGFIGGISQAIASLRRLRELIVCKLDISSPISS--RTFPSPVL---- 285 A ++++ + + + S+ R+ + I + P + S VL Sbjct: 1146 TLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIEN 1205 Query: 286 ----------GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL 335 G + + ++ Y ++ R++L++++F+V+ G+ + L+G +G+GK+++ S Sbjct: 1206 PHAQKCWPSGGQMDVQGLTAKYT-EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264 Query: 336 ILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TR 393 +LR G ++I+G+ ++L+ R+ +PQ + + + N+ P+ + Sbjct: 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD---PYEQWSD 1320 Query: 394 KEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453 +EI A I + D +L DG LS G Q + +AR+IL + ILLLDE Sbjct: 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380 Query: 454 GSALDIENEQKIWKVLREQRRGRTTIFASHRLSAI 488 + LD Q I K L++ T I + HR+ A+ Sbjct: 1381 SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415 Score = 94.2 bits (234), Expect = 8e-20 Identities = 60/210 (28%), Positives = 110/210 (52%), Gaps = 19/210 (9%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 +LKN++F ++ G+ +A+ G +G+GK+S+ +I+ +P G ++ G Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487 Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAML--AQAHEFIGCLENGYDTILGD 422 I++ PQ ++ ++ DNI G + E + +++ Q E I T+LG+ Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544 Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIW-KVLREQRRGRTTIFA 481 G + LS GQ RI++ARA+ KD+ + LLD + LD+ E++I+ L + +T I Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604 Query: 482 SHRLSAIQDADMVFVLHDQVIVEKGVHEEL 511 + +L ++ AD + +LH+ V G EL Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 95.9 bits (239), Expect = 3e-20 Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 14/200 (7%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 IL N++F+++ GE + G SG GK+++ ++ P SG++ EG D+ L E Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKE-IQNAAMLAQAHEFIGCLENGYDTILG 421 R+ +++ Q P + +VYDN+ P R + A L F DTIL Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFLDDLERF-----ALPDTILT 132 Query: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK----IWKVLREQRRGRT 477 LS G+ QRI++ R + +LLLDE+ SALD N+ I + +REQ Sbjct: 133 KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ--NIA 190 Query: 478 TIFASHRLSAIQDADMVFVL 497 ++ +H I AD V L Sbjct: 191 VLWVTHDKDEINHADKVITL 210 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 92.7 bits (231), Expect = 2e-19 Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 20/223 (8%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358 LKN+N + + AL+G SG GK+++ + R D G V +G D+ + + Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA----TRKEIQNAA--MLAQAHEFIGCL 412 + E+RR + V Q P S+YDNIA G P +KE+ L +A L Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYG-PRLHGIKDKKELDEIVEESLKKA-----AL 130 Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472 + L D A+ LS GQ QR+ IARA+ + +LLLDE SALD KI ++++E Sbjct: 131 WDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190 Query: 473 RRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK 514 ++ T + +H + A + +D +D +VE G E++ Sbjct: 191 KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 92.6 bits (230), Expect = 2e-19 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%) Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369 + V GE +A++G SGAGK+++ +LI F +P SGS+++ L+ + R Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQ-RPVSMLF 76 Query: 370 PQHPIMIAASVYDNIAIGC-PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428 ++ + +V NI +G P Q ++ A + G L LS Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQV------GIADYLDRLPEQLS 130 Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLS 486 GQ QR+A+AR +++ +PILLLDE SALD +++ ++++ R RT + +H LS Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 Query: 487 -AIQDADMVFVLHD 499 A A + V+ Sbjct: 191 DARAIASQIAVVSQ 204 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 91.8 bits (228), Expect = 3e-19 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 13/231 (5%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 VS SV F ++L V+ +V+ G + LVG +GAGKT++ I P +G+ Sbjct: 5 DVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT 59 Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQH-PIMIAASVYDNIAIG-CPHATRKEIQNAAMLAQ 404 V + G D+ LS R +A VPQ + V + +G PH +R + A Sbjct: 60 VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA 119 Query: 405 AHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 +E D V LS G+ QR+ +ARA+ + +P+LLLDE ++LDI ++ Sbjct: 120 VER---AMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176 Query: 464 KIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 + +++R G+T + A H L A + D + +L D + G ++L Sbjct: 177 RTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 91.4 bits (227), Expect = 6e-19 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 10/244 (4%) Query: 272 SSPISSRTFPSPVL-GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKT 330 +SP S P PV GS+ F V Y + +L+ V+F + P E + +VG +G+GK+ Sbjct: 1294 ASPTS--AAPHPVQAGSLVFEGVQMRYR-EGLPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 Query: 331 SIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP- 389 ++ +R + C G + + G ++ L E+RR + +PQ P++ +V N+ P Sbjct: 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD---PF 1407 Query: 390 -HATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILK-DSPI 447 A+ E+ A L E + G D+ + +G + S GQ Q + +ARA+LK S Sbjct: 1408 LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467 Query: 448 LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGV 507 +L+DE + +D +++I + T I +HRL + D + V+ + E G Sbjct: 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGS 1527 Query: 508 HEEL 511 EL Sbjct: 1528 PREL 1531 Score = 82.1 bits (203), Expect = 3e-16 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 15/212 (7%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 +L++V+ +V G+ ++G +G+GK+++ +L ++ G V E R Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------R 721 Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424 IA+VPQ ++ A+V NI + + +A ++Q + L G +T +G+ Sbjct: 722 SIAYVPQQAWIMNATVRGNILFFDEEDAAR-LADAVRVSQLEADLAQLGGGLETEIGEKG 780 Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK-VLREQRRGRTTIFASH 483 V+LS GQ R+++ARA+ + + LLD+ SALD +++ + G+T + A+H Sbjct: 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATH 840 Query: 484 RLSAIQDADMVFVLHDQVIVEKGVHEELLKKS 515 ++ + AD V L D + G + ++ S Sbjct: 841 QVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 91.0 bits (226), Expect = 7e-19 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 12/238 (5%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350 R + + Y + L N+NF IA++G +GAGK+++F P SGSV I Sbjct: 7 RDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIR 64 Query: 351 GIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408 G + ++ E+R+F+ V Q+P + + +V +IA G + E A ++ A Sbjct: 65 GEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHM 124 Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468 +G LE D + HLS G+ +R+AIA I + +L+LDE + LD + +++ Sbjct: 125 LG-LEELRDRV----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179 Query: 469 LRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHI 523 L + + G T IF++H+L + + AD ++V+ IV G EE+ + A H+ Sbjct: 180 LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHL 237 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 90.6 bits (225), Expect = 9e-19 Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 21/236 (8%) Query: 290 FRSVSFVYPGKSKR-SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348 +R+ G +R +L NV+ +++ GET+ L+G SG GK+++ L+L P G+V Sbjct: 12 YRTGGLF--GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69 Query: 349 IEGIDLRLLSLEEIRRF---IAWVPQ------HPIMIAASVYDNIAIGCPHATRKEIQNA 399 G DL L ++ R F + V Q +P M + IG P + + Sbjct: 70 FRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQI-----IGEPLRHLTSLDES 124 Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459 A+ E + + LS GQ+QRI IARA+ +++LDE S LD+ Sbjct: 125 EQKARIAELLDMVGLR-SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 Query: 460 ENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512 + I ++LR+ Q G +F +H L +Q V V+ IVE+ +LL Sbjct: 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 90.1 bits (224), Expect = 1e-18 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 14/222 (6%) Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358 G + IL +++ ++ G+ AL+G +G GK+++ R P SG+V + + +LS Sbjct: 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLS 70 Query: 359 LEEIRRFIAWVPQ-HPIMIAASVYDNIAIG-CPHAT---RKEIQNAAMLAQAHEFIGCLE 413 ++ R +A +PQ H +V + +A G P + R ++ A + QA E Sbjct: 71 SRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH 130 Query: 414 NGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471 L D + LS GQ QR +A + +D+P++LLDE + LDI ++ ++ +++RE Sbjct: 131 ------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184 Query: 472 QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 +G+T + H L+ A + D + VL + ++ +G EE++ Sbjct: 185 NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 90.2 bits (225), Expect = 1e-18 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 19/223 (8%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361 R++L +V+ T++PGE +A++G +GAGK+++ + P SG V + G L S E Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73 Query: 362 IRRFIAWVPQHPIMIAA-SVYDNIAIG-CPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419 + R A +PQH + +V + +A+G PH + ++ A++A A + Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRA-EDDALVAAALAQVDLAH------ 126 Query: 420 LGDGAVH-LSTGQIQRIAIARAIL------KDSPILLLDEMGSALDIENEQKIWKVLRE- 471 L LS G+ QR+ +AR + LLLDE SALD+ ++ + ++ R+ Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186 Query: 472 -QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 RG I H L+ A + AD + +LH +V G E+L Sbjct: 187 AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 89.7 bits (223), Expect = 2e-18 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 32/225 (14%) Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356 GK +LK V+ ++ GE +A+VG SG+GK+++ L+ +P SG V G L Sbjct: 12 QEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSK 71 Query: 357 LSLEEIRRF----IAWVPQ-HPIMIAASVYDNIA----IGCPHATRKEIQNAA--MLAQA 405 LS E + + ++ Q H ++ + +N+A IG + KE + A ML + Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG--KKSVKEAKERAYEMLEKV 129 Query: 406 HEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461 L H LS G+ QR+AIARA++ ++L DE LD N Sbjct: 130 G-------------LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 Query: 462 EQKIWKVLREQRRGRTTIF--ASHRLSAIQDADMVFVLHDQVIVE 504 + I+ ++ E R T F +H L + D V + D + Sbjct: 177 AKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 89.6 bits (222), Expect = 2e-18 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 12/223 (5%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLR- 355 ++ +KNV + + A++G SG GKT++ I R D G + +G D+ Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 Query: 356 -LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HAT-RKEIQNAAMLAQAHEFIGCL 412 L + E R+ + V Q P S+YDN+A G H K + + + L Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKK--AAL 132 Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472 + + L LS GQ QR+ IARA+ + ++LLDE SALD Q+I K+L E Sbjct: 133 WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL 192 Query: 473 RRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK 514 T + +H + AI+ AD + ++ ++E G E++++ Sbjct: 193 SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 89.5 bits (222), Expect = 2e-18 Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365 L +VN V G +AL+G SG+GK+++ +I P SG + + G D + R Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73 Query: 366 IAWVPQHPIMIA-ASVYDNIAIGC------PHATRKEIQNAAMLAQAHEFIGCLENGYDT 418 I +V QH + +V DNIA G + ++ L Q + Y Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL----GDRYPN 129 Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGR 476 LS GQ QR+A+ARA+ + +LLLDE ALD + +++ LR+ Sbjct: 130 -------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182 Query: 477 TTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511 TT+F +H A++ AD + V+ + I + G +E+ Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 88.9 bits (220), Expect = 3e-18 Identities = 71/249 (28%), Positives = 110/249 (44%), Gaps = 27/249 (10%) Query: 286 GSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP--C 343 G + + Y ++L +++ ++ GE +AL+G SG GKT++ I F Sbjct: 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60 Query: 344 SGSVEIEGIDLRLLSLEEIRRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAML 402 +G + I DL +R +A + Q + + V DN+A G + A + Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118 Query: 403 AQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 A A + +G LGD A H LS G QRIAIARAI + +LLLDE SALD Sbjct: 119 ADALKLVG---------LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD 169 Query: 459 IE---NEQKIWKVLREQRRGRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514 N ++ L E+ T + +H + A+ AD ++ D + G + L Sbjct: 170 ANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 Query: 515 --SGFYAHY 521 GF A + Sbjct: 230 PADGFAAEF 238 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 88.2 bits (219), Expect = 4e-18 Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 31/236 (13%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF---YDPCSGSV 347 R + + YP + LK +NF + GE +AL+G +GAGK+++F L F P SG V Sbjct: 5 RDLKYSYPDGT--EALKGINFKAEKGEMVALLGPNGAGKSTLF---LHFNGILKPTSGEV 59 Query: 348 EIEG--IDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIA-----IGCPHATRKEIQN 398 I+G I SL E+R+ + V Q+P + A +V +++A +G +E++ Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSK---EEVEK 116 Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSAL 457 +A + +G G++ HLS GQ +R+AIA IL P I++LDE S L Sbjct: 117 RVK--EALKAVGM--EGFEN---KPPHHLSGGQKKRVAIA-GILAMKPEIIVLDEPTSGL 168 Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511 D +I K+L + + G T I ++H + + AD V+V+ D I+++G +E+ Sbjct: 169 DPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 88.4 bits (219), Expect = 4e-18 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 13/216 (6%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI--- 362 + + + + GE ++G SG+GK++ ++ R +P +G + I+G ++ S E+ Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68 Query: 363 -RRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420 R+ I V Q + ++ N ++G E + + + +G LE Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG-LEEYEHRYP 127 Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD--IENEQKIWKVLREQRRGRTT 478 + LS G QR+ +ARA+ + ILL+DE SALD I + + + +T Sbjct: 128 DE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183 Query: 479 IFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLK 513 +F +H L AI+ D + ++ IV+ G +E+L+ Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 88.2 bits (218), Expect = 5e-18 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 26/248 (10%) Query: 284 VLGSVSFRSVSFVYPGKSKRSIL---------KNVNFTVQPGETIALVGDSGAGKTSIFS 334 + G R+ ++ G SK IL K+ + ++ GE ++G SG+GK+++ Sbjct: 13 IFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVR 72 Query: 335 LILRFYDPCSGSVEIEGIDLRLLS---LEEIRR-FIAWVPQH-PIMIAASVYDNIAIGCP 389 L+ R +P G V I+G+D+ +S L E+RR IA V Q +M +V DN A G Sbjct: 73 LLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 Query: 390 HA--TRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPI 447 A +E + A+ A + + Y LS G QR+ +ARA+ + I Sbjct: 133 LAGINAEERREKALDALRQVGLENYAHSYPD-------ELSGGMRQRVGLARALAINPDI 185 Query: 448 LLLDEMGSALD--IENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVE 504 LL+DE SALD I E + V + + RT +F SH L A++ D + ++ + +V+ Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 Query: 505 KGVHEELL 512 G +E+L Sbjct: 246 VGTPDEIL 253 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 87.6 bits (217), Expect = 7e-18 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 12/223 (5%) Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356 + G L NV+ V G+ ++G SGAGK+++ + P SGSV ++G DL Sbjct: 12 HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71 Query: 357 LSLEEI---RRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412 LS E+ RR I + QH ++ + +V+ N+A+ + + + + +G L Sbjct: 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG-L 130 Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472 + +D+ +LS GQ QR+AIARA+ + +LL DE SALD Q I ++L+E Sbjct: 131 GDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186 Query: 473 RR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512 R G T + +H + ++ D V V+ + ++E+G E+ Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 87.3 bits (217), Expect = 9e-18 Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%) Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369 + TV+ GE +A++G SGAGK+++ +LI F P SGS+ + G D RR ++ + Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76 Query: 370 PQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLS 428 Q + + +V NI +G + L +G +E+ + G LS Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-IEDLLARLPG----QLS 131 Query: 429 TGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLS 486 GQ QR+A+AR ++++ PILLLDE SALD Q++ ++ + Q R T + SH L Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191 Query: 487 -AIQDADMVFVLHDQVIVEKGVHEELLKKSGFYAHYHILGMS 527 A + A V+ D I G +ELL SG + +LG+ Sbjct: 192 DAARIAPRSLVVADGRIAWDGPTDELL--SGKASASALLGIK 231 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 85.9 bits (213), Expect = 2e-17 Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 19/218 (8%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350 ++++F Y ++ L +V+F V+ GE ++++G +G+GK++ LI + SG + I+ Sbjct: 8 KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIID 67 Query: 351 GIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAI-----GCPHATRKEIQNAAMLA 403 G L ++ +IR I V Q+P + A+V D++A G PH KE N Sbjct: 68 GDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN----- 122 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 +A E +G + LS GQ QR+AIA A+ I++LDE S LD E Sbjct: 123 EALELVGMQD-----FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL 177 Query: 464 KIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHD 499 ++ K ++ T I +H L + +D V V+ + Sbjct: 178 ELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKN 215 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 85.9 bits (213), Expect = 2e-17 Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 19/235 (8%) Query: 281 PSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY 340 P+L RS+S Y G +LK ++FT+ GE AL+G +GAGK+++ +I Sbjct: 8 APPLL---CARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 Query: 341 DPCSGSVEIEGIDLRLLSLEEIRRF-IAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQN 398 P SG++EI G L+ + + I VPQ P++ SV +NI G P + Sbjct: 62 PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKM 121 Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 +LA +GC + L A L Q + I R +++DS IL+LDE ++L Sbjct: 122 KQLLAA----LGCQLD-----LDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172 Query: 459 IENEQKIWKVLRE-QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEEL 511 ++++ +RE +G +F SH+L I Q AD + V+ D I G +L Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 Score = 51.6 bits (124), Expect = 5e-07 Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 16/207 (7%) Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LEEIRRF 365 +N++ V+ GE + L G GAG+T + + G + + G ++ LS + + R Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 Query: 366 IAWVP----QHPIMIAASVYDNIAIGCPHATR----KEIQNAAMLAQAHEFIGCLENGYD 417 + ++P + + A + N+ H R K + A+L + + N + Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNVC-ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE 398 Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGR 476 LS G Q++ IA+ + +L++DE +D+ I++++R + Sbjct: 399 QAART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454 Query: 477 TTIFASHRLSAI-QDADMVFVLHDQVI 502 +F S L I Q AD V V+H I Sbjct: 455 AVLFISSDLEEIEQMADRVLVMHQGEI 481 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 85.5 bits (212), Expect = 3e-17 Identities = 66/214 (30%), Positives = 112/214 (52%), Gaps = 14/214 (6%) Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP----CSGSVEIEGIDLRLLSLEEIR 363 ++N +++ GE +ALVG+SG+GK+ IL P SG + ++G L LS+ Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI--RG 61 Query: 364 RFIAWVPQHPIMI---AASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420 R IA + Q+P ++ ++ + Q A++ +A E +G L + + +L Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG-LPDP-EEVL 119 Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTT 478 LS G +QR+ IA A+L + P L+ DE + LD+ N+ ++ K+LRE Q G Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179 Query: 479 IFASHRLSAI-QDADMVFVLHDQVIVEKGVHEEL 511 + +H L + + AD V V+ D IVE+G +E+ Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 85.3 bits (211), Expect = 3e-17 Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 12/206 (5%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + F VS Y G R L+ V F ++PGE L G SGAGK+++ LI P +G + Sbjct: 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59 Query: 348 EIEGIDLRLLSLEEI---RRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403 G D+ L E+ RR I + Q H +++ +VYDN+AI A ++ Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 A + +G L+ + + LS G+ QR+ IARA++ +LL DE LD + Sbjct: 120 AALDKVGLLDKAKNF-----PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174 Query: 464 KIWKVLRE-QRRGRTTIFASHRLSAI 488 I ++ E R G T + A+H + I Sbjct: 175 GILRLFEEFNRVGVTVLMATHDIGLI 200 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 85.3 bits (211), Expect = 4e-17 Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 8/215 (3%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 R I+ V+ T PG L+G +G+GK+++ L+ P +G+V++ G+DL LS Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73 Query: 363 RRFIAWVPQH-PIMIAASVYDNIAIG-CPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420 R +A V Q + +V D +A+G PH + + A + E + L Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL---SHL 130 Query: 421 GDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRTT 478 D + LS G+ QR+ +ARA+ ++ +LLLDE + LD+ + + ++RE G T Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190 Query: 479 IFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 + A H L+ A D V VL +V G E+L Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 85.1 bits (211), Expect = 4e-17 Identities = 62/225 (27%), Positives = 115/225 (51%), Gaps = 32/225 (14%) Query: 288 VSFRSVSFVY-PGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 +S R+++ Y G ++ +L ++N + PGE + L G SG+GKT++ +LI GS Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61 Query: 347 VEIEGIDLRLLS---LEEIRRFIAWVPQ-HPIMIAASVYDNIAIGC---PHATRKEI--Q 397 +++ G +L S L ++RR I ++ Q H ++ + N+ + P+ + +E + Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER 121 Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 AML E +G L + D + LS GQ QR+AIARA++ ++L DE +AL Sbjct: 122 ARAML----EAVG-LGDHLDYYPHN----LSGGQKQRVAIARALVHRPKLVLADEPTAAL 172 Query: 458 DIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVI 502 D ++ + + ++++ +L+ Q ++ V HD I Sbjct: 173 DSKSGRDVVELMQ-------------KLAREQGCTILIVTHDNRI 204 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 85.1 bits (210), Expect = 5e-17 Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 13/221 (5%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRLL 357 + +KNVN VQ G AL+G SG GKT+ I R +D +G + ++G D+ Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76 Query: 358 SLEEI--RRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN 414 ++ + RR + V Q P SV+DN+ G A ++ + +A+ L + Sbjct: 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136 Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474 L A LS GQ QR+ IARA+ + ILL+DE SALD + +I ++ + ++ Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196 Query: 475 GRTTIFASHRL---SAIQDADMVFVLHDQVIVEKGVHEELL 512 T I +H + + + D F++ D +VE G ++L Sbjct: 197 VTTIIIVTHNMHQAARVSDTTSFFLVGD--LVEHGPTDQLF 235 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 84.7 bits (209), Expect = 5e-17 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 7/218 (3%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS---GSVEIEGIDLRLLS 358 K+ L ++N ++ + AL+G SG GK++ R D + G VEIEG D++ Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HAT-RKEIQNAAMLAQAHEFIGCLENGY 416 + +R+ + V Q P + S+Y+NI+ H + + + A++ + +G E Sbjct: 74 VVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476 D L A+ LS GQ QR+ IARA+ +LLLDE SALD + I ++L+E Sbjct: 134 DK-LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192 Query: 477 TTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLK 513 + I +H + + AD H ++E G +E + Sbjct: 193 SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 84.4 bits (209), Expect = 7e-17 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 25/198 (12%) Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI----EGIDL 354 G + +LKNV+ TV GE +AL G SGAGK+++ + Y P SG + + +DL Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76 Query: 355 RLLS---LEEIRRF-IAWVPQH----PIMIAASVYDN--IAIGCPHATRKEIQNAAMLAQ 404 S + E+RR I +V Q P + A V + G P + A Sbjct: 77 AQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE---AARARARELL 133 Query: 405 AHEFIGCLENGYDTILGDGA-VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 A I L S G+ QR+ IAR + D PILLLDE ++LD N Q Sbjct: 134 ARLNI-------PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186 Query: 464 KIWKVLREQRRGRTTIFA 481 + +++ E + + Sbjct: 187 VVVELIAEAKARGAALIG 204 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 83.3 bits (206), Expect = 1e-16 Identities = 57/232 (24%), Positives = 110/232 (47%), Gaps = 37/232 (15%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 S+ S++ +Y ++ L V+F Q G + +G +GAGK++ +I + P SGS Sbjct: 2 SIRVSSLTKLY---GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58 Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQH-PIMIAASVYDNIAI-----GCPHATRKEIQNAA 400 V++ G D+ L + +E++R I ++P+H P+ + V + + G K+ + Sbjct: 59 VQVCGEDV-LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-RVEE 116 Query: 401 MLAQ------AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454 M+ H+ IG L GY QR+ +A+A++ D +L+LDE Sbjct: 117 MIELVGLRPEQHKKIGQLSKGYR---------------QRVGLAQALIHDPKVLILDEPT 161 Query: 455 SALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506 + LD +I V++ + +T I ++H + ++ + +I+ KG Sbjct: 162 TGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA-----ICDRVIIINKG 208 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 83.5 bits (206), Expect = 1e-16 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 23/235 (9%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + +VS+ YP + L+N+N ++ GE I ++G +G+GK+++ + P G V Sbjct: 2 IRLENVSYSYPDGT--PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59 Query: 348 EIEGIDLRLLS-LEEIRRFIAWVPQHP--IMIAASVYDNIAIG----C--PHATRKEIQN 398 + GID S L+ IR+ + V Q+P + +V +++A G C P RK + Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119 Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 A LA E G + LS GQ Q +A+A + + L+ DE+ S LD Sbjct: 120 A--LA---------EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168 Query: 459 IENEQKIW-KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512 ++ + ++ + +G+T ++ +H L + DAD + V+ IV +G E +L Sbjct: 169 PDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 82.9 bits (205), Expect = 2e-16 Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 14/193 (7%) Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--IDL 354 YPG + +LK +NF + GE +AL+G +GAGK+++ + P SG+V I+G +D Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58 Query: 355 RLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412 L E R+ + V Q P + AA V ++A G + E + + +A +G Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118 Query: 413 ENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 L + H LS G+ +R+AIA A+ +LLLDE + LD +++ +LR Sbjct: 119 G------LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172 Query: 472 QR-RGRTTIFASH 483 R G T + ++H Sbjct: 173 LRAEGMTVVISTH 185 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 82.8 bits (205), Expect = 2e-16 Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 16/238 (6%) Query: 287 SVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344 S+ +++ +Y + ++ L NVN ++ GE + L+G +G+GK+++ + P S Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61 Query: 345 GSVEIEGIDL--RLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPH--ATRKEIQN 398 G + I+G+D+ + + L +IR+ + V Q+P + ++ +IA G + + +EI+N Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIEN 121 Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 + +A +G Y+ LS GQ +R+AIA + + IL+LDE + LD Sbjct: 122 R--VKRAMNIVGL---DYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176 Query: 459 IENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513 + +I ++E + T I SH + + AD + V++ +G E+ K Sbjct: 177 PKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 82.6 bits (204), Expect = 2e-16 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 13/223 (5%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS-----GSVEIEGIDL-- 354 + IL ++N + E A +G SG GK++ R D G ++I+GID+ Sbjct: 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 Query: 355 RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNA-AMLAQAHEFIGC 411 ++ +R + V Q P S+YDN+A G P H K + ++ ++ +G Sbjct: 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-PKLHGLAKNKKKLDEIVEKSLTSVGL 135 Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 E D L D A LS GQ QR+ IARAI +LL+DE SALD I +++E Sbjct: 136 WEELGDR-LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194 Query: 472 QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513 ++ T I +H + + +D V IVE +E+ K Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 82.6 bits (204), Expect = 2e-16 Identities = 61/229 (26%), Positives = 119/229 (51%), Gaps = 19/229 (8%) Query: 287 SVSFRSVSFVY-PGKSKRSI-LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344 S+ F +V ++Y PG L N++F ++ G +ALVG +G+GK+++ P S Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61 Query: 345 GSVEIEGIDLRL----LSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPH--ATRKEI 396 G++ I G + +L+++R+ ++ V Q P + +V ++ G + + E Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + A+ + + +G E+ ++ LS GQ++R+AIA + + IL LDE + Sbjct: 122 KEKAL--KWLKKVGLSED----LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175 Query: 457 LDIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVL-HDQVI 502 LD E +++ ++ ++ Q+ G T I +H + + + AD V VL H ++I Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 81.4 bits (201), Expect = 5e-16 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 27/222 (12%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD---PC 343 +S ++V+ Y G + +KNV + G+ AL+G SG GK+++ + R D C Sbjct: 13 IISLQNVTISY-GTFE--AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGC 69 Query: 344 S--GSVEIEGIDLRLLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNA 399 S G V +G DL ++ E+RR I V Q P S+Y+NIA G R Sbjct: 70 SLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG----ARINGYTG 125 Query: 400 AM-------LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452 M L +A + C + L + LS GQ QR+ IAR I + ++L+DE Sbjct: 126 DMDELVERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180 Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADM 493 SALD + KI + + E ++ T + +H + A++ +DM Sbjct: 181 PCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDM 222 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 80.9 bits (200), Expect = 8e-16 Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 16/221 (7%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358 LK +N ++ + AL+G SG GK++ + R D G V ++G D+ + Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENGY 416 + ++R+ + V Q P S+YDN+A G P H + + + ++ ++ + + Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGAALWDEVK 137 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476 D L A+ LS GQ QR+ IARA+ + +LL+DE SALD + KI ++++E ++ Sbjct: 138 DR-LKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196 Query: 477 TTIFASHRL---SAIQDADMVFVLHDQVIVEKGVHEELLKK 514 T + +H + S I D F+ + IVE G +L Sbjct: 197 TIVIVTHNMQQASRISDKTAFFLNGE--IVEFGDTVDLFTN 235 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 80.9 bits (200), Expect = 8e-16 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 29/225 (12%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361 + +L +++ + G+ +AL+G SG+GKT++ +I SG + G D+ L + Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD 73 Query: 362 IRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAA-----------MLAQAHEFI 409 R + +V QH + +V+DNIA G R+E NAA M+ AH Sbjct: 74 --RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH--- 128 Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469 L + Y LS GQ QR+A+ARA+ + ILLLDE ALD + +++ + L Sbjct: 129 --LADRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179 Query: 470 RE--QRRGRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEEL 511 R+ + T++F +H + A++ AD V V+ I + G +++ Sbjct: 180 RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 80.5 bits (198), Expect = 1e-15 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 292 SVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF---YDP---CSG 345 ++S +Y + ++ILK++ + ++G SG+GK+++ ++ R YD G Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71 Query: 346 SVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGC-PHATRKEIQNAAMLA 403 V G D+ + ++R+ + V Q P S+YDNIA H +++ + ++ Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 + +G + YD L A LS GQ QR+ IARA+ +LL+DE S +DI N Q Sbjct: 132 ECLRKVGLWKEVYDR-LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190 Query: 464 KIWKVLREQRRGRTTIFASHR-LSAIQDADMVFVLHDQVIVEKGVHEELL 512 I K++ E + + SH + AD V L++ +VE G E+ Sbjct: 191 AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 80.1 bits (198), Expect = 1e-15 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 23/218 (10%) Query: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIR 363 + LK+++ +V+ GE + L+G SG GKT++ +I +G++ G D+ L + + Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75 Query: 364 RFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL--ENGYD 417 R V Q P + +V DNIA G + + A +A+ + +G E Y Sbjct: 76 RDYGIVFQSYALFPNL---TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP 132 Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALDIENEQKIWKVLRE-QRR- 474 LS GQ QR+A+ARA L SP +LLLDE SALD + + +R+ QRR Sbjct: 133 G-------QLSGGQQQRVALARA-LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL 184 Query: 475 GRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEEL 511 G TTI +H + A+ AD + V++ VI + G +E+ Sbjct: 185 GVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 79.6 bits (196), Expect = 2e-15 Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 14/219 (6%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRLLSL 359 +L VN + AL+G SG+GK+++ + R + SG V ++G D+ + + Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 Query: 360 EEIRRFIAWVPQHPIMIAA-SVYDNIAIGCP----HATRKEIQNAAMLAQAHEFIGCLEN 414 E+RR + V Q P I S+++N+A+G ++KE+Q + A E + Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ--ERVRWALEKAQLWDE 135 Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474 D L A LS GQ QR+ IARA+ +LL DE + LD EN KI + E ++ Sbjct: 136 VKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK 194 Query: 475 GRTTIFASH-RLSAIQDADMVFVLHDQVIVEKGVHEELL 512 T + +H A + +D V L+ IVE G E+ Sbjct: 195 DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 79.8 bits (197), Expect = 2e-15 Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 31/205 (15%) Query: 321 LVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQH----PIMI 376 L+G SG GKT++ L+ F P SGS+ ++G D+ + R I V Q P M Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHM- 57 Query: 377 AASVYDNIAIGC-----PHATRKEIQNAAM-LAQAHEFIGCLENGYDTILGDGAVH-LST 429 +V +N+A G P A K A+ L Q EF D H LS Sbjct: 58 --TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEF------------ADRKPHQLSG 103 Query: 430 GQIQRIAIARAILKDSPILLLDEMGSALDIE-NEQKIWKVLREQRR-GRTTIFASHRLS- 486 GQ QR+A+ARA++ ILLLDE SALD + +Q ++ Q + G T +F +H Sbjct: 104 GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEE 163 Query: 487 AIQDADMVFVLHDQVIVEKGVHEEL 511 A+ +D + ++ I + G EE+ Sbjct: 164 AMTMSDRIAIMRKGKIAQIGTPEEI 188 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 79.0 bits (195), Expect = 3e-15 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 13/227 (5%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 S + + + +L NV+ +++ GET+AL+G SG GK+++ L++ P G+ Sbjct: 10 SHHYAHGGLSGKHQHQT-VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68 Query: 347 VEIEGIDLRLLSLEEIRRF---IAWVPQHPIMIA---ASVYDNIAIGCPHATRKEIQNAA 400 V G L L+ + + F I V Q I +V + I H + A Sbjct: 69 VSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAE 126 Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460 LA+A E + ++ D++L LS GQ+QR+ +ARA+ + +L+LDE S LD+ Sbjct: 127 RLARASEMLRAVDLD-DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 Query: 461 NEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVE 504 + + ++L++ Q+ G +F +H L ++ V V+ + IVE Sbjct: 186 LQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 78.6 bits (194), Expect = 4e-15 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 33/236 (13%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361 +++ N+N T++ G + L+G SG GKT++ L+ P G + I+G D+ S+++ Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ 77 Query: 362 IRRFIAWVPQH----PIMIAASVYDNIA-----IGCPHATRKE-IQNAAMLAQAHEFIGC 411 R I V Q P M S+ +N+ +G P RK+ ++ A L F Sbjct: 78 --RDICMVFQSYALFPHM---SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF--- 129 Query: 412 LENGY-DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470 E+ Y D I S GQ QR+A+ARA++ +LL DE S LD + + + +R Sbjct: 130 -EDRYVDQI--------SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180 Query: 471 E--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK--SGFYAHY 521 E Q+ T+++ +H S A +D V V++ I++ G +EL ++ S F A + Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF 236 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 78.3 bits (193), Expect = 4e-15 Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 32/255 (12%) Query: 299 GKSKRSILK---------NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349 GK++ IL N + ++ GE L+G SG+GK+S+ + GSV + Sbjct: 24 GKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLV 83 Query: 350 EG----IDLRLLSLEEIRRF----IAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAA 400 + ID+ +RR ++ V Q +M +V +N+A G E + Sbjct: 84 KDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRK 143 Query: 401 MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460 + + E +G L D G+ LS G QR+ +ARA D+ ILL+DE SALD Sbjct: 144 RVDEQLELVG-LAQWADKKPGE----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPL 198 Query: 461 NEQKIW-KVLREQRRGRTTI-FASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKKSG- 516 ++ ++L Q + TI F SH L A++ + + ++ I++ G EE++ Sbjct: 199 IRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPAN 258 Query: 517 -----FYAHYHILGM 526 F AH + L + Sbjct: 259 DYVADFVAHTNPLNV 273 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 78.5 bits (193), Expect = 4e-15 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 18/225 (8%) Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--------I 352 ++ L ++N + + AL+G SG GK++ + R D S V+IEG I Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISN-VKIEGEVLLDGKNI 73 Query: 353 DLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIG 410 + + + E+R+ + V Q P S+YDN+A G P H + + + ++ A + Sbjct: 74 YDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG-PRIHGIKDKKELDKIVEWALKKAA 132 Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470 + D L A+ LS GQ QR+ IAR I ++L+DE SALD + KI ++ Sbjct: 133 LWDEVKDD-LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191 Query: 471 EQRRGRTTIFASHRL---SAIQDADMVFVLHDQVIVEKGVHEELL 512 E ++ T + +H + S + D F++ D ++E E++ Sbjct: 192 ELKKEYTIVIVTHNMQQASRVSDYTAFFLMGD--LIEFNKTEKIF 234 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 78.2 bits (192), Expect = 4e-15 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 295 FVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL 354 F Y +S + L V+F++ GE ++++G +G+GK++ LI ++ G V+I+G L Sbjct: 12 FKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 Query: 355 RLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412 ++ +RR I V Q+P + A+V D++A G + + I M+ + E + + Sbjct: 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMEN---QGIPREEMIKRVDEALLAV 128 Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471 N D + A LS GQ QR+A+A I I++LDE S LD Q+I +V+ E Sbjct: 129 -NMLDFKTREPA-RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186 Query: 472 -QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKKS 515 ++ T + +H L +D + V+ I+++ EL S Sbjct: 187 KEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 78.0 bits (192), Expect = 6e-15 Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 38/202 (18%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR- 364 L++ +FTV G ALVG +G+GK+++F ++ F SG + I G R + +++ Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78 Query: 365 FIAWVPQH-------PIMIAASV----YDNIA-IGCPHATRKEIQNAA-----MLAQAHE 407 +A+VPQ P+++ V Y ++ + ++I AA M+ H Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR 138 Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467 IG LS GQ +R+ +ARAI + ++LLDE + +D++ E +I Sbjct: 139 QIG---------------ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS 183 Query: 468 VLREQR-RGRTTIFASHRLSAI 488 +LRE R G+T + ++H L ++ Sbjct: 184 LLRELRDEGKTMLVSTHNLGSV 205 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 77.7 bits (191), Expect = 6e-15 Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS-----GSVEIEGIDL--RLL 357 ILKNVN + AL+G SG GK++ + R D G + ++G+D+ + Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 Query: 358 SLEEIRRFIAWVPQHPIMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGY 416 + E+R+ + V Q P S++DN+A G H E + ++ + + Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476 D L A+ LS GQ QR+ IAR I ++L+DE SALD + KI ++ + + Sbjct: 138 DK-LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDY 196 Query: 477 TTIFASHRLSAIQDADMV-----FVLHDQVIVEKGVHEELL 512 T + +H + Q A V F L+ + I+E G+ +++ Sbjct: 197 TIVIVTHNM---QQATRVSKYTSFFLNGE-IIESGLTDQIF 233 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 77.9 bits (192), Expect = 7e-15 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 29/228 (12%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL---RLLS- 358 +++L ++ V+PGE +A++G SG+GKT++ I P +G++ + I + R LS Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75 Query: 359 ----LEEIRRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL- 412 + ++R+ + +V Q+ + +V +NI G P + E + A A+A E + + Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEAT-ARARELLAKVG 133 Query: 413 ----ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468 E Y LS GQ QR+AIARA+ ++L DE SALD E ++ Sbjct: 134 LAGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186 Query: 469 LR---EQRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512 +R +++ RT + +H +S +D AD + IVE+G + L Sbjct: 187 IRQLAQEK--RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 77.4 bits (190), Expect = 8e-15 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 32/213 (15%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--PCS---G 345 R V+F Y LK ++ ++ +A +G SG GK++ L R D P + G Sbjct: 7 RDVNFWY---GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63 Query: 346 SVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIG-----------CPHAT 392 + I+G ++ + + ++E+R+ + V Q P S+++N+A G Sbjct: 64 EIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRV 123 Query: 393 RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452 + ++ AA+ + + L + A LS GQ QR+ IARA+ +LL+DE Sbjct: 124 EETLKGAALWDEVKD-----------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172 Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485 SALD + K+ +++ E ++ T + +H + Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNM 205 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 77.2 bits (190), Expect = 9e-15 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 24/201 (11%) Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358 G + +L NV+F++ GE +A+VG SG+GK+++ L+ P SG V G + LS Sbjct: 18 GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS 77 Query: 359 LE---EIR-RFIAWVPQ-HPIMIAASVYDNIA----IGCPHATRKEIQNAA--MLAQAHE 407 E+R + + ++ Q H ++ + +N+A IG EI + A MLA Sbjct: 78 SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG--KKKPAEINSRALEMLAA--- 132 Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467 +G LS G+ QR+AIARA++ + ++L DE LD N I++ Sbjct: 133 -VGLEHRANHR-----PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186 Query: 468 VLRE--QRRGRTTIFASHRLS 486 +L E + +G + +H L Sbjct: 187 LLGELNRLQGTAFLVVTHDLQ 207 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 77.0 bits (189), Expect = 1e-14 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 23/248 (9%) Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341 SP ++F Y G LKN+N V + AL+G SG GK++ R +D Sbjct: 11 SPTQQKSEVNKLNFYYGGYQA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67 Query: 342 --PCS---GSVEIEGIDLRLLSLE----EIRRFIAWVPQHPIMIAASVYDNIAIGCPHAT 392 P + G + + ++ +LS E E+R I+ V Q P S+++N+A G Sbjct: 68 LYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGL---R 124 Query: 393 RKEIQNAAMLAQAHEFIGCLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPI 447 + ++ ++L + E L N +D + LGD A +LS GQ QR+ IARA+ D I Sbjct: 125 IRGVKRRSILEERVE--NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEI 182 Query: 448 LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKG 506 LL DE SALD I +++ + + T + +H + A + +D ++ ++E G Sbjct: 183 LLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 Query: 507 VHEELLKK 514 + + K Sbjct: 243 ATDTIFIK 250 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 76.7 bits (189), Expect = 1e-14 Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 20/209 (9%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350 VY K K L +V+ P E AL+G SG+GK+++ I R D +GS+ Sbjct: 13 VYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYN 70 Query: 351 GIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE- 407 G ++ ++R+ I V Q P S+Y+N+ G K I++ +L +A E Sbjct: 71 GHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGL---RLKGIKDKQVLDEAVEK 127 Query: 408 -FIGC-LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSALDIENEQK 464 G + + L D A+ LS GQ QR+ IAR +L SP I+LLDE SALD + K Sbjct: 128 SLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR-VLATSPKIILLDEPTSALDPISAGK 186 Query: 465 IWKVLREQRRGRTTIFASHRL---SAIQD 490 I + L + T + + + S I D Sbjct: 187 IEETLLGLKDDYTMLLVTRSMQQASRISD 215 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 76.6 bits (188), Expect = 2e-14 Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 16/208 (7%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRL 356 K LK ++ E AL+G SG GK++ + R D +G+V + G ++ Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 Query: 357 LSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN 414 + + ++R+ + V Q P S+Y+N+ G +++ A+L +A E Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGL---RLAGVKDKAVLDEAVETSLKQAA 133 Query: 415 GYDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 +D + L + A+ LS GQ QR+ IAR + ++LLDE SALD + +I +L E Sbjct: 134 IWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193 Query: 472 QRRGRTTIFASHRL---SAIQDADMVFV 496 R T I +H + S I D F+ Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFL 221 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 76.4 bits (188), Expect = 2e-14 Identities = 59/249 (23%), Positives = 122/249 (48%), Gaps = 17/249 (6%) Query: 287 SVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344 ++ F +VS+ Y + + + +VN + G+ A+VG +G+GK+++ I P + Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61 Query: 345 GSVEIEGIDLRLLS----LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQN 398 G+V ++ I + + + +R+ I V Q P + +V I G P + + Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNFKMNLDE 120 Query: 399 AAMLAQAHEFIGCLENGYD-TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 AH + ++ G+ ++ +S GQ+++IAI + + I++LDE + L Sbjct: 121 VK--NYAHRLL--MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176 Query: 458 DIENEQKIWKVLRE--QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEELLKK 514 D ++++++ ++L+ +T I SH ++ + + AD V V+ + IV + +EL K Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 Query: 515 SGFYAHYHI 523 A +HI Sbjct: 237 KKKLADWHI 245 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 76.3 bits (188), Expect = 2e-14 Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 41/223 (18%) Query: 297 YPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL 356 Y GK L+++N T++ GE + ++G SG GKT++ +LI F GS+ ++G + Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67 Query: 357 LSLEEIRRFIAWVPQHPIMIA-ASVYDNIAI-----GCPHATRKEIQNAAMLAQAHEFIG 410 E V Q+ ++ +V DN+A G R EI ML + +G Sbjct: 68 PGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA-HQMLKK----VG 117 Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD-IENEQ------ 463 I LS GQ QR+ IARA+ + +LLLDE ALD EQ Sbjct: 118 LEGAEKRYIW-----QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLL 172 Query: 464 KIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506 K+W Q G+ + +H I++A VF+ + V++ G Sbjct: 173 KLW-----QETGKQVLLITHD---IEEA--VFMATELVLLSPG 205 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 76.3 bits (188), Expect = 2e-14 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 32/242 (13%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + F++VSF Y + + LK+V+F + G+ ++VG +G+GK++I L++ SG + Sbjct: 8 IVFKNVSFQYQSDASFT-LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66 Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIG-----CPHATRKEIQNAA 400 + + E++R+ I V Q+P + + V ++A G P+ + A Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126 Query: 401 -----MLAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMG 454 ML +A D + LS GQ QR+AIA + + +++LDE Sbjct: 127 LKQVDMLERA----------------DYEPNALSGGQKQRVAIAGVLALNPSVIILDEAT 170 Query: 455 SALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512 S LD + Q + ++R+ T I +H LS +AD V V++ + ++G E+ Sbjct: 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIF 230 Query: 513 KK 514 Sbjct: 231 DH 232 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 76.2 bits (187), Expect = 2e-14 Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 18/220 (8%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358 L ++ + E AL+G SG GK++ + R D +G ++ EG ++ + Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHA--TRKEIQNAAM---LAQAHEFIGCLE 413 L E+R+ + V Q P SVYDN+A G A KE+ + + L QA + + Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139 Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473 N L A S GQ QRI IARA+ ++LLDE SALD + +I + L E + Sbjct: 140 N-----LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194 Query: 474 RGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELL 512 T I +H L A + +D L + ++E G EE+ Sbjct: 195 HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 76.0 bits (187), Expect = 2e-14 Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 32/218 (14%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS-----GSVEIEGIDLRL--LS 358 LK V+ + AL+G SG GK++ + R D GSVE++G D+ ++ Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRK--EIQNAAMLA---------QAHE 407 L E+R+ + V Q P S+ +NI+ G RK +I N +LA E Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYG----PRKHGDI-NTGLLARLLGRDDKDAEDE 175 Query: 408 FIG-CLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461 + L +D + L D A+ LS GQ QR+ IAR + D ++L+DE SALD Sbjct: 176 LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235 Query: 462 EQKIWKVLREQRRGRTTIFASHRL---SAIQDADMVFV 496 KI ++ E T + +H + + I D VF+ Sbjct: 236 TSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 76.0 bits (188), Expect = 2e-14 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 12/212 (5%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL-RLLSLEEIR 363 IL+ V+ V GE ++G +G GKT++ ++ SGS+ ++G D+ +L E R Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 Query: 364 RFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422 IA+VPQ I +V +N+ G R+ + + +E L+ GD Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGD 131 Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIF 480 LS GQ Q++AIARA++ +LLLDE + + I +V+R G + Sbjct: 132 ----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL 187 Query: 481 ASHRLS-AIQDADMVFVLHDQVIVEKGVHEEL 511 L A + AD +V+ +V G +EL Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAGDEL 219 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 75.2 bits (185), Expect = 4e-14 Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 23/237 (9%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF---YDPCS 344 + + F Y +K LK ++ ++ G AL+G +GAGK+ +L+L Y P Sbjct: 5 IEVEDLHFRYKDGTK--ALKGLSLSIPEGSKTALLGPNGAGKS---TLLLHLNGIYLPQR 59 Query: 345 GSVEIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHA--TRKEIQNAA 400 G V++ G ++ + + +R + V Q P + +++V+D++A G + + E++ Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119 Query: 401 MLAQAHEFIGCLENGYDTILGDGA-VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459 A +D D HLS GQ +R+AIA + D +++LDE + LD Sbjct: 120 EEALK------AVRMWD--FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171 Query: 460 ENEQKIWKVL-REQRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLKK 514 ++ + ++L R +G+T I A+H + A + AD V VL + ++ +G L + Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 75.3 bits (186), Expect = 4e-14 Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 22/224 (9%) Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348 SF + +PG L +++F + G+ AL+G++GAGK+++ ++ Y P +GS+ Sbjct: 6 SFDGIGKTFPGVKA---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62 Query: 349 IEGIDLRLLSLEE-IRRFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAMLA 403 I+G ++R S + +A + Q P M +V +N+ +G + + Sbjct: 63 IDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNY 119 Query: 404 QAHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462 +A E LE+ I D + +LS GQ Q + IA+A+ +++ ++ DE S+L Sbjct: 120 EARE---QLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176 Query: 463 QKIWKVLREQR-RGRTTIFASHRLSAIQDADMVFVLHDQVIVEK 505 +++++V+RE R GR ++ SHR+ + +F L D + V K Sbjct: 177 EQLFRVIRELRAEGRVILYVSHRM------EEIFALCDAITVFK 214 Score = 53.0 bits (128), Expect = 2e-07 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%) Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LEEIRRFIA 367 ++F+V+ GE + L G GAG++ + L+ +G V ++G + + S + IR I Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 Query: 368 WVP----QHPIMIAASVYDNIAIGCPHATRKE---IQNAAMLAQAHEFIGCLE----NGY 416 P I+ SV DNI I + I N A FI L + Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRG 475 I ++LS G Q+ + R + +D ++LLDE +D+ + +I+ V+ E +G Sbjct: 392 QLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQG 446 Query: 476 RTTIFASHRL 485 +F S L Sbjct: 447 VAVLFVSSDL 456 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 75.0 bits (184), Expect = 5e-14 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 20/222 (9%) Query: 278 RTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL 337 R P V G V P S R + +N T + A +G +GAGKT+ S++ Sbjct: 920 RELPGLVPGVCVKNLVKIFEP--SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILT 977 Query: 338 RFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATRK-- 394 P SG+V + G D+ +L+ +R+ + PQH I+ +V ++I R Sbjct: 978 GLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 Query: 395 --EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452 +++ AML + G + A LS G +++++A A + D+ +++LDE Sbjct: 1037 EAQLEMEAMLE---------DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMV 494 S +D + + IW +L + R GRT I ++H + +AD++ Sbjct: 1088 PTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EADLL 1126 Score = 53.1 bits (127), Expect = 2e-07 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 33/204 (16%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLR 355 VY G S ++ + V+PGE L+G +GAGKT+ F ++ SG + G + Sbjct: 1946 VYSGTSSPAV-DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI- 2003 Query: 356 LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPH---------ATRKEIQNAAMLA--- 403 L ++ ++ + + + PQ + D++ G H +EI+ A + Sbjct: 2004 LTNISDVHQNMGYCPQFDAI------DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057 Query: 404 -QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE 462 + L Y S G ++++ A A++ P++LLDE + +D + Sbjct: 2058 LGLSLYADRLAGTY-----------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 Query: 463 QKIWKVLRE-QRRGRTTIFASHRL 485 + +W + R GR + SH + Sbjct: 2107 RMLWNTIVSIIREGRAVVLTSHSM 2130 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 74.7 bits (184), Expect = 5e-14 Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 31/222 (13%) Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS---LEEIRRF 365 V + GET+ +VG+SG GK++ I+ G V G DL + +R Sbjct: 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSD 99 Query: 366 IAWVPQHPIMIAASVYDNIAIG----------CPHATRKEIQN--AAMLAQAHEFIGCLE 413 I + Q P+ AS+ + IG P +R+E+++ AM+ + +G L Sbjct: 100 IQMIFQDPL---ASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK----VGLLP 152 Query: 414 NGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472 N L + H S GQ QRI IARA++ + +++ DE SALD+ + ++ +L++ Sbjct: 153 N-----LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 Query: 473 RR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511 +R G + IF +H L+ ++ +D V V++ VE G ++E+ Sbjct: 208 QREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 74.4 bits (183), Expect = 7e-14 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 20/210 (9%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--PCS- 344 + R +SF Y L +++ + + AL+G SG GK++ + R D P + Sbjct: 7 MEARGLSFFYGDFQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63 Query: 345 --GSVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA 400 G + ++G ++ + + E+RR + V Q P S+++N+A G +++ A Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGL---RVNGVKDKA 120 Query: 401 MLAQAHEFIGCLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGS 455 LA+ E L + +D + L + A+ LS GQ QR+ IARA+ + +LL+DE S Sbjct: 121 YLAERVE--RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS 178 Query: 456 ALDIENEQKIWKVLREQRRGRTTIFASHRL 485 ALD QKI +++ E + T I +H + Sbjct: 179 ALDPIATQKIEELIHELKARYTIIIVTHNM 208 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 74.3 bits (182), Expect = 8e-14 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 17/238 (7%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS- 346 + R V+F Y K +LKN+N + A++G SG GK+++ + R D SG+ Sbjct: 5 IKIRGVNFFY---HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61 Query: 347 ------VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPH---ATRKEIQ 397 ++ E I L + +R+ + V Q P S++DN+A G P T + Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG-PRMLGTTAQSRL 120 Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 + + + L + L + LS GQ QR+ IAR + + ++L+DE SAL Sbjct: 121 DEVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178 Query: 458 DIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKK 514 D + +I ++++E ++ T +H + A + +D L +VE G E+ + Sbjct: 179 DPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 74.2 bits (183), Expect = 9e-14 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 26/222 (11%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI--- 362 L V+FT++ G+T+A+VG+SG GK+++ L+ P G + +G DL E Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90 Query: 363 RRFIAWVPQHPI-------MIAASVYDNIAIGC--PHATRKEIQNAAMLAQAHEFIGCLE 413 R+ I V Q+P + + + + I A R+E + AM+A+ +G Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE-KALAMMAK----VGLRP 145 Query: 414 NGYDTILGDGAVHL-STGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR-- 470 YD H+ S GQ QRIAIARA++ D +++ DE SALD+ + ++ ++ Sbjct: 146 EHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200 Query: 471 EQRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511 +Q G + +F SH LS ++ AD V V++ VEKG E++ Sbjct: 201 QQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 73.9 bits (182), Expect = 1e-13 Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 30/236 (12%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 S+ ++ Y G + L ++ GET+ L+G SGAGK+S+ ++ P SG+ Sbjct: 2 SIQLNGINCFY-GAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58 Query: 347 VEIEGIDLRLLS------LEEIRRFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEI 396 + I G + E+RR + V Q P + +V N+ I P Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNL-IEAPCRVLGLS 114 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGA----VHLSTGQIQRIAIARAILKDSPILLLDE 452 ++ A+ A+A + + L L A +HLS GQ QR+AIARA++ + +LL DE Sbjct: 115 KDQAL-ARAEKLLERLR------LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 Query: 453 MGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKG 506 +ALD E +I ++RE G T + +H + A + A V + + IVE+G Sbjct: 168 PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 73.7 bits (181), Expect = 1e-13 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 29/207 (14%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365 LK VN T+Q GE I+L+G SG GK+++ +LI P SG V +EG + + + F Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60 Query: 366 IAWVPQHPIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423 + ++ +V +NI A+ + + A++ + +G L D G Sbjct: 61 ----QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVG-LTEAADKRPGQ- 114 Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI---ENEQ----KIWKVLREQRRGR 476 LS G QR+AIARA+ +LLLDE ALD N Q +IW + Sbjct: 115 ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW-----EEHRV 166 Query: 477 TTIFASHRLSAIQDADMVFVLHDQVIV 503 T + +H D D +L D+V++ Sbjct: 167 TVLMVTH------DVDEALLLSDRVVM 187 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 73.5 bits (180), Expect = 1e-13 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 25/227 (11%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLL------- 357 +LK V+ G+ I+++G SG+GK++ I P GS+ + G + L+ Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 Query: 358 ------SLEEIRRFIAWVPQH-PIMIAASVYDNI---AIGCPHATRKEIQNAAMLAQAHE 407 L +R + V QH + +V +N+ I +++E + A+ A Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAK- 138 Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK 467 +G E G VHLS GQ QR++IARA+ + +LL DE SALD E ++ + Sbjct: 139 -VGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193 Query: 468 VLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 ++++ G+T + +H + A + V LH I E+G E+L Sbjct: 194 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 73.2 bits (180), Expect = 1e-13 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 26/227 (11%) Query: 291 RSVSFVYP-GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-PCSGSVE 348 + + YP G+ + +LK ++ + GE +A+VG SG+GK+++ + IL D P SG+ Sbjct: 8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYR 66 Query: 349 IEGIDLRLL---SLEEIRR----FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM 401 + G D+ L +L ++RR FI ++ ++ + N+ + +A ++ Sbjct: 67 VAGQDVATLDADALAQLRREHFGFI--FQRYHLLSHLTAAQNVEVPAVYAG---LERKQR 121 Query: 402 LAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 L +A E + L L D + LS GQ QR++IARA++ ++L DE AL Sbjct: 122 LLRAQELLQRLG------LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175 Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503 D + +++ +L + + RG T I +H A+ V + D IV Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 73.4 bits (180), Expect = 2e-13 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD---PC--SGSVEIEGIDLRLLSLE 360 +K VN + A++G SG GK++ I R D C +G++ +G D+ + Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 Query: 361 EI--RRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENGY 416 E+ R+ I V Q P S++DNIA G P H + Q ++ ++ + Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYG-PRLHGINDKKQLEEIVEKSLRKAALWDEVS 173 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476 D L A+ LS GQ QR+ +AR + + ILLLDE SALD + KI +++E R Sbjct: 174 DR-LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232 Query: 477 TTIFASHRL---SAIQDADMVFVLHDQVIVE 504 T + +H + S + D M F ++ V+VE Sbjct: 233 TIMIVTHNMQQASRVSDYTMFF--YEGVLVE 261 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 73.3 bits (180), Expect = 2e-13 Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 38/250 (15%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 V F V+ + ++L +NF+V GE +AL+G SG+GK++I +++ G + Sbjct: 1 VRFSDVTKRF---GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57 Query: 348 EIEGIDLRLLS-------------LEEIRRFIAWVPQH----PIMIAASVYDNIAIGCPH 390 ++EG L + L ++R I V Q P +V DN+ Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK---TVLDNVTEAPVL 114 Query: 391 ATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSP 446 + A +A E + + L D A H LS GQ QR+AIARA+ Sbjct: 115 V--LGMARAEAEKRAMELLDMVG------LADKADHMPAQLSGGQQQRVAIARALAMRPK 166 Query: 447 ILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIV 503 ++L DE+ SALD E ++ V+R T + +H + ++ AD V IV Sbjct: 167 VMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 Query: 504 EKGVHEELLK 513 E+G +E+ + Sbjct: 227 EQGKPDEIFR 236 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 73.1 bits (179), Expect = 2e-13 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 16/228 (7%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350 +Y G+ KR++ +++ ++ AL+G SG GK++ I R D G + E Sbjct: 29 IYYGE-KRAV-NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYE 86 Query: 351 GIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408 G+++ +++ +RR I V Q P S+Y+NI +A + ++L + E Sbjct: 87 GLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGER---RKSVLDEIVEE 143 Query: 409 IGCLENGYDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 +D + L A+ LS GQ QR+ IAR + +LLLDE SALD + KI Sbjct: 144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203 Query: 466 WKVLREQRRGRTTIFASHRL-SAIQDADMVFVLHDQVIVEKGVHEELL 512 +++ E + + I +H + A++ +D + +VE E++ Sbjct: 204 EELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 72.8 bits (179), Expect = 2e-13 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 36/250 (14%) Query: 281 PSPVLGSVSFRSVSF-VYPGKSKR-----SILKNVNFTVQPGETIALVGDSGAGKTSIFS 334 P+ L V V+F + G KR ++KN++FT++PGET+ LVG+SG+GK++ Sbjct: 271 PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGL 330 Query: 335 LILRFYDPCSGSVEIEGIDLRLLSLEE---IRRFIAWVPQHP-------IMIAASVYDNI 384 +LR G + +G L L+ + +R I V Q P + + + + + Sbjct: 331 ALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389 Query: 385 AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH-----LSTGQIQRIAIAR 439 + P + + + + E G D H S GQ QRIAIAR Sbjct: 390 RVHQPTLSAAQREQQVIAVME-------EVGLDP----ETRHRYPAEFSGGQRQRIAIAR 438 Query: 440 AILKDSPILLLDEMGSALDIENEQKIWKVLR--EQRRGRTTIFASHRLSAIQD-ADMVFV 496 A++ +++LDE S+LD + +I +L+ +Q+ +F SH L ++ V V Sbjct: 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIV 498 Query: 497 LHDQVIVEKG 506 L +VE+G Sbjct: 499 LRQGEVVEQG 508 Score = 70.5 bits (173), Expect = 1e-12 Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 46/253 (18%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL-ILRFYDPC-- 343 SV+FR ++ R+++ +V+ ++ GET+ALVG+SG+GK S+ +L ILR P Sbjct: 12 SVAFRQ------QQTVRTVVNDVSLQIEAGETLALVGESGSGK-SVTALSILRLL-PSPP 63 Query: 344 ----SGSVEIEGIDLRLLSLEEIRRF----IAWVPQHPIMIAASVYDNIAIGCPHATRKE 395 SG + G L S + +R IA + Q P M++ + + E Sbjct: 64 VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP-MVSLNPLHTL----------E 112 Query: 396 IQNAAML---------AQAHEFIGCLE----NGYDTILGDGAVHLSTGQIQRIAIARAIL 442 Q +L A E + CL+ L D LS G+ QR+ IA A+L Sbjct: 113 KQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172 Query: 443 KDSPILLLDEMGSALDIENEQKIWKVLREQRR--GRTTIFASHRLSAI-QDADMVFVLHD 499 +L+ DE +ALD+ + +I ++LRE ++ +F +H LS + + AD V V+ + Sbjct: 173 TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232 Query: 500 QVIVEKGVHEELL 512 VE+ L Sbjct: 233 GRCVEQNRAATLF 245 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 72.8 bits (179), Expect = 2e-13 Identities = 62/216 (28%), Positives = 109/216 (50%), Gaps = 23/216 (10%) Query: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP----CSGSVEIEGIDLR 355 + ++ +LKNV+ +PGE +A++G SGAGKT++ + L F P SGSV + G Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMN-ALAFRSPKGVKGSGSVLLNG---M 90 Query: 356 LLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGC----PHATRKEIQNAAMLAQAHEFIG 410 + +E+R A+V Q + I +V +++ P K+ + + + + +G Sbjct: 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKK-EKRERVDEVLQALG 149 Query: 411 CLENGYDTILGDGAVH--LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468 L +T +G LS G+ +R+A A +L D P+L DE S LD + +V Sbjct: 150 -LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208 Query: 469 LRE-QRRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503 L+ ++G+T I H+ S+ +F L D++I+ Sbjct: 209 LKGLAQKGKTIICTIHQPSS-----ELFELFDKIIL 239 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 73.0 bits (179), Expect = 2e-13 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 19/220 (8%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--IDLRLLSLEEIR 363 LK +N ++ GE A++G +GAGK+++F + P SG + +G ID L ++R Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 Query: 364 RFIAWVPQHP--IMIAASVYDNIAIGCPHAT--RKEIQNAAMLAQAHEFIGCLENGYDTI 419 + V Q P + +ASVY +++ G + E++ A I L++ Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD----- 136 Query: 420 LGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR--GR 476 H LS GQ +R+AIA ++ + +L+LDE + LD +I K+L E ++ G Sbjct: 137 ---KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193 Query: 477 TTIFASHRLSAIQ-DADMVFVLHD-QVIVEKGVHEELLKK 514 T I A+H + + D VFV+ + +VI++ E +K Sbjct: 194 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 72.1 bits (177), Expect = 3e-13 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 20/205 (9%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDLRLLSLE 360 L +V+ + + A++G SG GK++ I R D G + G ++ ++ Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 Query: 361 EI--RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQ--NAAMLAQAHEFI--GCLEN 414 + RR I V Q P S+YDN+A G +IQ + + + E + L + Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGL------KIQGYDGDIDERVEESLRRAALWD 168 Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474 L + LS GQ QR+ IARAI D ++L+DE SALD KI ++ E Sbjct: 169 EVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE 228 Query: 475 GRTTIFASHRL---SAIQDADMVFV 496 T + +H + + I D VF+ Sbjct: 229 EYTVVIVTHNMQQAARISDKTAVFL 253 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 72.4 bits (177), Expect = 3e-13 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 9/188 (4%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--------IDLRLL 357 L N+N + AL+G SG GK++ + R D G ++IEG I Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81 Query: 358 SLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417 + E+RR I V Q P S+YDNI+ G K+ + + + L N Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK 141 Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRT 477 L A+ LS GQ QR+ IAR + + ++L+DE SALD + KI +++ + T Sbjct: 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYT 201 Query: 478 TIFASHRL 485 I +H + Sbjct: 202 IIIVTHNM 209 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 72.0 bits (176), Expect = 3e-13 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD---PC--SGSVEIEGIDLRL 356 ++ LKNV+ + AL+G SG GK++ + R D C G V IEG D+ Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 Query: 357 LSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCPH---ATRKEIQNAAMLAQAHEFIGC 411 ++ E+R+ + V Q P S+YDN+A G P A +K++ ++ A Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG-PRIHGANKKDLD--GVVENALRSAAL 140 Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 + D L A+ LS GQ QR+ IAR + I+L DE SALD + +I ++ Sbjct: 141 WDETSDR-LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199 Query: 472 QRRGRTTIFASHRL 485 ++ T + +H + Sbjct: 200 LKKDYTIVIVTHNM 213 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 71.9 bits (176), Expect = 3e-13 Identities = 100/502 (19%), Positives = 185/502 (36%), Gaps = 68/502 (13%) Query: 39 GERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMSIVLRSLLM 98 G +I ++ + KI+ + RG + +L D ++I A + I I + + Sbjct: 81 GMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIF 140 Query: 99 GFGAMCM------MFVISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYADEKKLLNIFSD 152 F + MF I+I +I + L M KF DE+ N + Sbjct: 141 FFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAAR-----DEEDAFNEHTH 195 Query: 153 MIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIV--- 209 I G + ++++ I+ F A+ + + + IFI Sbjct: 196 AIAF---------GAKELKIHGIRR----LSFAHGAIQESANNIADLHIIEILIFIAAEN 242 Query: 210 -------FLIGAHYVATAEMPR---GKLAEFVVYAFIFFASIRSCLGFIGGISQAIASLR 259 LIG A A ++ FV+ + + + ++QA + + Sbjct: 243 FGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQ 302 Query: 260 RLRELIVCKLDISSP----------ISSRTFPSPVLGSVSFRSVSFVYPGKSKRS--ILK 307 RL + + P + S+ + V L Sbjct: 303 RLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG 359 Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIA 367 ++ + G+ + +VG++G GK+++ L Y P G + ++G + S ++ R + Sbjct: 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 Query: 368 WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF---IGCLENGYDTILGDGA 424 I ++D++ IG + NA Q E + + G+ T Sbjct: 420 -----AIFADFHLFDDL-IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-----T 468 Query: 425 VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFAS 482 LSTGQ +R+A+ A L+D PILL DE + D ++ ++ L +R+G+T I S Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528 Query: 483 HRLSAIQDADMVFVLHDQVIVE 504 H + AD + L IV+ Sbjct: 529 HDDQYFELADQIIKLAAGCIVK 550 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 72.1 bits (177), Expect = 3e-13 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 31/206 (15%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP-----CSGSVEIE 350 VY GK + +K ++ + + AL+G SG+GK++ + R D +G + Sbjct: 28 VYYGKKEA--IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYR 85 Query: 351 GIDLRL--LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQ----------- 397 GID+ +++ E+R+ I V Q P A S+Y+NI A K+ + Sbjct: 86 GIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLK 145 Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 AA+ Q + L A+ LS GQ QR+ IARAI ILL+DE SAL Sbjct: 146 QAALWDQVKD-----------DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194 Query: 458 DIENEQKIWKVLREQRRGRTTIFASH 483 D + ++ + + E ++ T I +H Sbjct: 195 DPISTMQLEETMFELKKNYTIIIVTH 220 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 72.0 bits (177), Expect = 4e-13 Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 28/238 (11%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + F++VS + G ++ +L N++ + GE + ++G SG+GK+++ I + + SG + Sbjct: 2 IEFKNVSKHF-GPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58 Query: 348 EIEGIDLR--LLSLEEIRRFIAWVPQH----PIMIAASVYDNIAIGCPHATRKEIQNAAM 401 ++G+ + + IR+ V Q P + A +N+ G P R + A Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA---LENVMFG-PLRVRGASKEEAE 114 Query: 402 LAQAHEFIGCLENGYDTILGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 QA E + + L + A H LS GQ QR+AIARA+ ++L DE SAL Sbjct: 115 -KQARELLAKVG------LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167 Query: 458 DIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD--ADMVFVLHDQVIVEKGVHEELL 512 D E ++ KV+++ G T + +H + + + ++F+ + I E G + L+ Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR-IAEDGDPQVLI 224 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 70.9 bits (173), Expect = 7e-13 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 30/217 (13%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS---- 346 R+ +F Y ++K +L ++N ++ + A +G SG GK++ + + D G+ Sbjct: 84 RNFNFWYMNRTKH-VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEG 142 Query: 347 -VEIEGIDLRL--LSLEEIRRFIAWVPQHPIMIAASVYDNIAIG-----------CPHAT 392 + G + R +S E+R I V Q P S++DN+A G Sbjct: 143 EIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIV 202 Query: 393 RKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452 K +++AA+ + + + N LS GQ QR+ IARAI + +LL+DE Sbjct: 203 EKSLKSAALWDEVKDDLDKAGNA-----------LSGGQQQRLCIARAIALEPEVLLMDE 251 Query: 453 MGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQ 489 SALD KI +++ E ++ + I +H ++ Q Sbjct: 252 PTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ 288 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 70.9 bits (174), Expect = 7e-13 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 18/232 (7%) Query: 287 SVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS 344 ++ ++VS+ Y + + L +VN T++ G A +G +G+GK++I L+ + P Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61 Query: 345 GSVEIEGIDLRLLS----LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQN 398 GSV ++ + S +++IR+ + V Q P + +V ++A G P + Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEE 120 Query: 399 AAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP-ILLLDEMGSA 456 A LA+ +G E+ ++ LS GQ++R+AIA IL P IL+LDE + Sbjct: 121 AEALAREKLALVGISESLFEK----NPFELSGGQMRRVAIA-GILAMEPKILVLDEPTAG 175 Query: 457 LDIENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506 LD + +++ + ++ + G T + +H + + + AD V+VL +V G Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 70.8 bits (174), Expect = 9e-13 Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 24/210 (11%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--P--- 342 + R+++F Y GK LKN+N + + A +G SG GK+++ R Y+ P Sbjct: 14 IQVRNLNFYY-GKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70 Query: 343 CSGSVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAA 400 G + ++G ++ + +R + V Q P S+YDNIA G + + A Sbjct: 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEK--LSRAE 128 Query: 401 M-------LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453 M L +A L N L LS GQ QR+ IAR I +LLLDE Sbjct: 129 MDERVEWALTKA-----ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183 Query: 454 GSALDIENEQKIWKVLREQRRGRTTIFASH 483 SALD + +I +++ E ++ T + +H Sbjct: 184 CSALDPISTGRIEELITELKQDYTVVIVTH 213 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 70.7 bits (173), Expect = 9e-13 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 41/238 (17%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG----------IDLR 355 ++N++F++Q GET+A+VG+SG+GK+ ++R + G V+ + I+L Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 Query: 356 LLSLEEIRRF----IAWVPQHPI-----------MIAASVYDNIAIGCPHATR--KEIQN 398 S ++R +A + Q P+ IA S+ + A K + + Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151 Query: 399 AAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 + +A TIL LS G QR+ IA A+ +L+ DE +ALD Sbjct: 152 QVRIPEAQ-----------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200 Query: 459 IENEQKIWKVLR--EQRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513 + + +I ++++ ++ IF +H + + + AD V V++ VE G E++ Sbjct: 201 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258 Score = 68.7 bits (168), Expect = 3e-12 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 22/215 (10%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS---LEEI 362 ++ V+F + PGET++LVG+SG+GK++ +LR + G + G + LS L+ + Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399 Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCP-------HATRKEIQNAAMLAQAHEFIGCL-EN 414 RR I ++ Q P AS+ +G H AA +A E +G L E+ Sbjct: 400 RRDIQFIFQDPY---ASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH 456 Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474 + S GQ QRI IARA+ + +++ DE SALD+ +I +L + +R Sbjct: 457 AWRY-----PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 Query: 475 --GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKG 506 G +F SH ++ ++ + V V++ IVE G Sbjct: 512 DFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 70.6 bits (173), Expect = 1e-12 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 18/210 (8%) Query: 282 SPVLGSVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRF 339 + + GS+S ++ KS ++++ ++FTV GE L+G +GAGK++I +IL Sbjct: 31 ASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 Query: 340 YDPCSGSVEIEGIDL----RLLSLEEIRRFIAWVPQHPIM-IAASVYDNIAIGCPHATRK 394 P +G + + G+ + RL R I VPQ + + +V +N+ + + Sbjct: 91 TSPDAGKITVLGVPVPARARL-----ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454 + A++ EF LE+ D + D LS G +R+ +ARA++ D +L+LDE Sbjct: 146 TREIEAVIPSLLEF-ARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPT 200 Query: 455 SALDIENEQKIWKVLRE-QRRGRTTIFASH 483 + LD IW+ LR RG+T + +H Sbjct: 201 TGLDPHARHLIWERLRSLLARGKTILLTTH 230 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 70.6 bits (173), Expect = 1e-12 Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 12/203 (5%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365 LK+VN TV PGE AL+G++GAGK+++ ++ ++P G++ I I+ L + + Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 Query: 366 -IAWVPQHPIMI-AASVYDNIAIGCPHATRKE-----IQNAAMLAQAHEFIGCLENGYDT 418 I + Q +I +V +N+ IG H T+K I M +A + L G Sbjct: 81 GIGIIYQELSVIDELTVLENLYIG-RHLTKKVCGVNIIDWREMRVRAAMML--LRVGLKV 137 Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRT 477 L + +LS Q + IA+ ++ D+ ++++DE S+L + ++ ++ + R+ G Sbjct: 138 DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTA 197 Query: 478 TIFASHRLSAIQD-ADMVFVLHD 499 ++ SH+L+ I+ D V+ D Sbjct: 198 IVYISHKLAEIRRICDRYTVMKD 220 Score = 38.2 bits (89), Expect = 0.005 Identities = 40/206 (19%), Positives = 87/206 (42%), Gaps = 27/206 (13%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LE 360 R +++++F+V GE + G G+G+T + + + G + + G D+ S L+ Sbjct: 275 DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLD 334 Query: 361 EIRRFIAWVPQ----HPIMIAASVYDNIAI-------------GCPHATRKEIQNAAMLA 403 +++ +A++ + + S+ N+AI G H + Q A Sbjct: 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE--VDEQRTAENQ 392 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 + + C + LS G Q++ I++ + +++ DE +D+ + Sbjct: 393 RELLALKC------HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKA 446 Query: 464 KIWKVLRE-QRRGRTTIFASHRLSAI 488 +I+KV+R+ G+ + S L I Sbjct: 447 EIYKVMRQLADDGKVILMVSSELPEI 472 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 70.1 bits (172), Expect = 1e-12 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 22/209 (10%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR---FYDPC- 343 + R+++ Y K L +++ + A +G SG GK+++ R D C Sbjct: 26 LEVRNLNLFYGDKQ---ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82 Query: 344 -SGSVEIEGIDL--RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKE-IQNA 399 G + ++G ++ + + + E+RR + V Q P S+Y+N+ G R + I N Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG----LRLQGINNR 138 Query: 400 AMLAQAHEFIGCLENG--YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454 +L +A E L +D + L + A LS GQ QR+ IARAI + +LLLDE Sbjct: 139 RVLDEAVER--SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196 Query: 455 SALDIENEQKIWKVLREQRRGRTTIFASH 483 SALD + KI +++ E + T + +H Sbjct: 197 SALDPISTLKIEELITELKSKYTIVIVTH 225 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 69.7 bits (170), Expect = 2e-12 Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 13/224 (5%) Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG-----SVEIEGID 353 G + +++L V+ +L+G +G+GKT+ + R D SG V + G Sbjct: 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS 89 Query: 354 L-RLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC-PH--ATRKEIQNAAMLAQAHEFI 409 + + E RR + + Q P S+ DN+ G H RKE + +AQA Sbjct: 90 IFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG---VAQARLTE 146 Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469 L + L D LS GQ Q + +AR + + +LLLDE SALD +KI + + Sbjct: 147 VGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI 206 Query: 470 REQRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 R T I +H L+ A + +D + D +VE+G E+L Sbjct: 207 RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 69.4 bits (170), Expect = 2e-12 Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 15/200 (7%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + FR+V Y + ++ ++F VQ GE L+G +GAGKT+ ++L P +GS+ Sbjct: 8 IDFRNVEKRY---GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64 Query: 348 EI--EGIDLRLLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQ 404 + E + R R+ + VPQ + +V +N+ + + A++ Sbjct: 65 SLCGEPVPSR---ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPP 121 Query: 405 AHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK 464 EF LEN D +G+ LS G +R+ +ARA++ D +L+LDE + LD + Sbjct: 122 LLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176 Query: 465 IWKVLRE-QRRGRTTIFASH 483 +W+ LR RG+T + +H Sbjct: 177 MWERLRSLLARGKTILLTTH 196 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 69.2 bits (169), Expect = 2e-12 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 15/223 (6%) Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358 G K ++ +N+ + G A++G +G GK+++ + R P G V ++G ++ + Sbjct: 16 GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA 75 Query: 359 LEEIRRFIAWVPQHPIMIA-ASVYDNIAIG-CPHA---TRKEIQNAAMLAQAHEFIGCLE 413 +E+ R I + Q+ +V + +A G PH TR ++ + +A + G Sbjct: 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-- 133 Query: 414 NGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472 T L D +V LS GQ QR IA + +++ I+LLDE + LDI ++ + ++L E Sbjct: 134 ----THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSEL 189 Query: 473 RR--GRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 R G T H L+ A + A + L + IV +G +E++ Sbjct: 190 NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 69.1 bits (169), Expect = 2e-12 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 6/186 (3%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL-RLLSL 359 LK++N + + AL+G SG GK+++ + R D +G + ++G D+ + + Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 Query: 360 EEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTI 419 ++R + V Q P S+Y+N+A G K+ + + + L + Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDR 138 Query: 420 LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTI 479 L A LS GQ QR+ IAR I + ++L+DE SALD KI +++ E ++ T + Sbjct: 139 LKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIV 198 Query: 480 FASHRL 485 +H + Sbjct: 199 IVTHSM 204 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 69.1 bits (169), Expect = 3e-12 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 21/195 (10%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRL--------- 356 L ++ ++ AL+G SG GK+++ R D G I G D+ Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG-CRITG-DILYNGENIMDSG 79 Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG- 415 + +RR I V Q P S+Y+N+A G P +N L E L+ Sbjct: 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYG-PRI--HGEKNKKTLDTIVE--KSLKGAA 134 Query: 416 -YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 +D + L D A+ LS GQ QR+ IAR + + ++L+DE SALD KI ++ + Sbjct: 135 LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194 Query: 472 QRRGRTTIFASHRLS 486 ++ T I +H + Sbjct: 195 LKKEYTVIIVTHNMQ 209 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 69.0 bits (169), Expect = 3e-12 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 28/239 (11%) Query: 289 SFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE 348 + R+VSF PG R++L ++ T G+ L+G +G+GK+++ ++ R P G + Sbjct: 13 ALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 Query: 349 IEGIDLRLLSLEEIRRFIAWVPQH-PIMIAASVYDNIAIG-CP-H--------ATRKEIQ 397 ++ L S + R +A++PQ P +V + +AIG P H A R++++ Sbjct: 70 LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE 129 Query: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 A L L + LS G+ QR IA + +DS LLLDE SAL Sbjct: 130 EAISLVGLKPLAHRLVDS-----------LSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178 Query: 458 DIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513 DI ++ + ++ Q RG T I H ++ A + D + L ++ +G EL++ Sbjct: 179 DIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 68.5 bits (168), Expect = 3e-12 Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 44/226 (19%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 SV+ R+V+ Y I K++N + GE + VG SG GK+++ +I D SG Sbjct: 3 SVTLRNVTKAYGDVV---ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59 Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQ----HPIMIAASVYDNIAIG--CPHATRKEI---- 396 + I R+ + R + V Q +P + SV +N++ G A ++EI Sbjct: 60 LFIGEK--RMNDVPPAERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEEINQRV 114 Query: 397 -QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGS 455 Q A +L AH +L LS GQ QR+AI R ++ + + LLDE S Sbjct: 115 NQVAEVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 Query: 456 ALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501 LD LR Q R + RL M++V HDQV Sbjct: 163 NLD--------AALRVQMRIEIS-----RLHKRLGRTMIYVTHDQV 195 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 68.4 bits (167), Expect = 4e-12 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL-EE 361 R ++++V+ TV GE + L+G +GAGKT+ F +++ +G++ I+ D+ LL L Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75 Query: 362 IRRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420 RR I ++PQ I SVYDN+ R ++ +A+E +E + L Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANEL---MEEFHIEHL 130 Query: 421 GDG-AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473 D LS G+ +R+ IARA+ + +LLDE + +D + I +++ R Sbjct: 131 RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 68.6 bits (168), Expect = 4e-12 Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 27/237 (11%) Query: 293 VSFVY--PGKSKRSI-LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI 349 VS+ Y +S + L +VN V+ GE + ++G +G+GK++I + P G V + Sbjct: 10 VSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV 69 Query: 350 EGIDLRLLS-LEEIRRFIAWVPQHP--IMIAASVYDNIAIG------CPHATRKEIQNAA 400 +G+D L +IR V Q+P ++A V +++A G P R+ + + Sbjct: 70 DGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESL 129 Query: 401 MLAQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459 +E+ A H LS GQ QR+AIA + ++ DE + LD Sbjct: 130 KKVGMYEY------------RRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177 Query: 460 ENEQKIWKVLRE--QRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVHEELLKK 514 +++ ++E ++ G T I +H + +AD + V+ +V +G +E+ K+ Sbjct: 178 SGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 68.5 bits (167), Expect = 4e-12 Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 26/219 (11%) Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341 ++ ++ + +SF Y SK ++ ++ + + A++G SG GK++ + R + Sbjct: 2 QQLIPAIKVKDLSFYY-NTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 Query: 342 PCSGSVEIEGI---------DLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC---- 388 G V++EG+ D R+ ++ +RR I V Q P S+Y+N+A G Sbjct: 59 -LEGPVKVEGVVDFFGQNIYDPRI-NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA 116 Query: 389 --PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP 446 P A EI +A+ A L L A+ LS GQ QR+ IARA+ Sbjct: 117 KLPQADLDEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPK 170 Query: 447 ILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485 +LL+DE SALD K+ +++ R T +H + Sbjct: 171 VLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 68.4 bits (168), Expect = 5e-12 Identities = 56/202 (27%), Positives = 107/202 (52%), Gaps = 12/202 (5%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC---SGSVEIEGIDLRLLSLEEI 362 L NV+ V+ GE ++L G++GAGK+++ ++ Y P G + EG +L+ ++ + Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDT 79 Query: 363 -RRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420 R IA + Q ++ SV +NI +G + AM +A + + L+ + Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT 139 Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI-WKVLRE-QRRGRTT 478 G +L GQ Q + IA+A+ K + +L+LDE ++L E+E + ++R+ + G Sbjct: 140 PVG--NLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196 Query: 479 IFASHRLSAIQD-ADMVFVLHD 499 I+ SH+L+ ++ +D + V+ D Sbjct: 197 IYISHKLNEVKAISDTICVIRD 218 Score = 56.1 bits (136), Expect = 2e-08 Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 13/220 (5%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-PCSGSVEI 349 R+++ P + +V+F+++ GE + + G GAG+T + + Y G + I Sbjct: 263 RNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 Query: 350 EGIDLRLLS-LEEIRRFIAWVP----QHPIMIAASVYDNIAIGC--PHATRKEIQNAAML 402 +G +++ + + I + IA VP + I+ V NI + I +AA L Sbjct: 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL 382 Query: 403 AQAHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461 E I L+ T + A+ LS G Q+ +A+ +L + IL+LDE +D+ Sbjct: 383 KTILESIQRLK--VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440 Query: 462 EQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHD 499 + +I+K++ + ++G I S L + +D V V+H+ Sbjct: 441 KYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHE 480 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 68.3 bits (167), Expect = 5e-12 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 20/211 (9%) Query: 311 FTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVP 370 + GE + L+G +GAGKT++ IL P G+V++ G + R I +VP Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55 Query: 371 Q-------HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423 Q PI +A +V R + + A + A +G E L D Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE------LADR 109 Query: 424 AV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFA 481 V LS GQ QR+ +ARA+ +LLLDE + LD+ ++ + ++ E G + Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169 Query: 482 SHRLSAIQDADMVFVLHDQVIVEKGVHEELL 512 +H L+ VL + ++ G ++L Sbjct: 170 THDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 67.8 bits (166), Expect = 6e-12 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 22/202 (10%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP-----CSGSVEIE 350 V+ G K+++ +V+ + A +G SG GK++ + R D +G + ++ Sbjct: 27 VFYG-EKQAL-FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 Query: 351 GIDLRLLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCP-----HATRKEIQNAAM-- 401 G D+ L+ E+R + V Q P S+Y+N+A G P ++ E+ Sbjct: 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG-PRIHGLARSKAELDEIVETS 143 Query: 402 LAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIEN 461 L +A G E D L + LS GQ QR+ IARAI ++L+DE SALD Sbjct: 144 LRKA----GLWEEVKDR-LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198 Query: 462 EQKIWKVLREQRRGRTTIFASH 483 K+ +++ E R+ T + +H Sbjct: 199 TAKVEELIDELRQNYTIVIVTH 220 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 67.9 bits (166), Expect = 6e-12 Identities = 61/203 (30%), Positives = 89/203 (43%), Gaps = 58/203 (28%) Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIA 367 +V+ T+ GE AL+G SG GK+++ ++ F P +G + ++G+DL + Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL------------S 84 Query: 368 WVP--QHPI-MIAAS--------VYDNIAIGCPH--ATRKEIQN--AAMLAQAH--EFIG 410 VP Q PI M+ S V NIA G + EI + ML H EF Sbjct: 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144 Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470 + LS GQ QR+A+AR++ K +LLLDE ALD K LR Sbjct: 145 RKPH-----------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALD--------KKLR 185 Query: 471 E----------QRRGRTTIFASH 483 + +R G T + +H Sbjct: 186 DRMQLEVVDILERVGVTCVMVTH 208 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 67.8 bits (166), Expect = 6e-12 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 33/226 (14%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365 + VNF V+ GE +G +GAGKT+ ++ P SG+ + G D+ + ++RR Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRS 67 Query: 366 IAWVPQHPIMIAASVYDNIA-----------IGCPHATRKEIQNAAMLAQAHEFIGCLEN 414 I VPQ+ ASV +++ G P +E +A E + E Sbjct: 68 IGIVPQY-----ASVDEDLTGRENLEMMGRLYGLPKDEAEE--------RAEELLELFEL 114 Query: 415 GY--DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472 G D +G S G +R+ IA +++ +L LDE + LD + IW +R Sbjct: 115 GEAADRPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170 Query: 473 RRGRTTIF-ASHRL-SAIQDADMVFVLHDQVIVEKGVHEELLKKSG 516 + TI +H + A + D + ++ I+ +G EEL ++ G Sbjct: 171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG 216 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 67.7 bits (165), Expect = 7e-12 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 13/212 (6%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358 +K+V+ A++G SG GK+++ I R +D +G + ++ D+ R + Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 Query: 359 LEEIRRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYD 417 IRR + V Q P A S+YDN+ G R A + ++ L + Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139 Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRT 477 L A+ LS GQ QR+ IAR I ++L+DE SALD + KI +++ E + T Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYT 199 Query: 478 TIFASHRL---SAIQDADMVFVLHDQVIVEKG 506 I +H + + + D F + D +VE G Sbjct: 200 IIIVTHNMQQAARVSDYTAFFYMGD--LVECG 229 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 67.8 bits (165), Expect = 7e-12 Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 15/251 (5%) Query: 288 VSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345 + F V++ Y S L +++ V+ G AL+G +G+GK+++ + P G Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61 Query: 346 SVEIEGIDLRLLS----LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEIQNA 399 V + I + S ++ +R+ + V Q P + +V ++A G + + + Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121 Query: 400 AMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459 + A+ E +G + ++ LS GQ++R+AIA + + +L+LDE + LD Sbjct: 122 KIAAEKLEMVGLADEFWEK----SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177 Query: 460 ENEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSGF 517 + ++ ++ + G+T + +H + + D AD V++L I+ G ++ ++ F Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237 Query: 518 YAHYHILGMSQ 528 H LG+ + Sbjct: 238 LKA-HELGVPK 247 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 67.3 bits (165), Expect = 1e-11 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%) Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLI---LRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365 ++ V+ GE + LVG +GAGK+++ + + L P SGS++ G L S E+ R Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELARH 70 Query: 366 IAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGA 424 A++ Q A V+ + + P T + A+ + +E L G D LG Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKT----RTEAVASALNEVAEAL--GLDDKLGRSV 124 Query: 425 VHLSTGQIQRIAIARAILKDSP-------ILLLDEMGSALDIENEQKIWKVLRE-QRRGR 476 LS G+ QR+ +A +L+ P +LLLDE ++LD+ + + ++L E ++G Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGI 184 Query: 477 TTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513 + +SH L+ ++ AD V++L ++ G +E+L Sbjct: 185 AVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 66.6 bits (162), Expect = 1e-11 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 26/223 (11%) Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341 S ++ ++ ++SF Y + IL+ V+ + + A++G SG GK++ + R + Sbjct: 2 SKLIPAIKVNNLSFYY---DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 Query: 342 PCSGSVEIEG--------IDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC----- 388 V +EG I R ++L +RR ++ V P + SVYDN+A G Sbjct: 59 -LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117 Query: 389 -PHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPI 447 P +I +A+ + + +++ + A+ LS GQ QR+ IARA+ + Sbjct: 118 RPKLEIDDIVESAL--KDADLWDEIKHK----IHKSALDLSGGQQQRLCIARALAVKPKV 171 Query: 448 LLLDEMGSALDIENEQKIWKVLREQ--RRGRTTIFASHRLSAI 488 LL+DE LD K+ +++ R T + SH L + Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 66.8 bits (164), Expect = 1e-11 Identities = 68/239 (28%), Positives = 99/239 (41%), Gaps = 69/239 (28%) Query: 287 SVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGS 346 + ++V Y GK ++K ++ V GE I LVG SG GK+++ ++ SG Sbjct: 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60 Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQ----HPIMIAASVYDNIAIG-----CPHATRKE-I 396 + I G + LE R IA V Q +P M SV +N+A G P A +E + Sbjct: 61 IWIGG--RVVNELEPADRDIAMVFQNYALYPHM---SVRENMAYGLKIRGMPKAEIEERV 115 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAV------HLSTGQIQRIAIARAILKDSPILLL 450 AA IL + LS GQ QR+A+ RAI+++ + L Sbjct: 116 AEAA-----------------RILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158 Query: 451 DEMGSALD--------IENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501 DE S LD +E + R RR +TT ++V HDQV Sbjct: 159 DEPLSNLDAKLRVQMRLE-------IQRLHRRLKTT--------------SLYVTHDQV 196 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 66.6 bits (162), Expect = 2e-11 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 10/195 (5%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC-----SGSVEIEGIDLRLLSLE 360 +++ + ++ E +G SG GK+++ + R D G V G D+ ++ Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 Query: 361 EI--RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDT 418 + RR+I V Q P + S++DN+A G R + + A + + D Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGL-RLNRYKGDLGDRVKHALQGAALWDEVKDK 142 Query: 419 ILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTT 478 + G + LS GQ QR+ IARAI + +LLLDE SALD +++ +++ E ++ T Sbjct: 143 LKVSG-LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTI 201 Query: 479 IFASHRL-SAIQDAD 492 +H + AI+ AD Sbjct: 202 ALVTHNMQQAIRVAD 216 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 66.3 bits (162), Expect = 2e-11 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 28/210 (13%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE 361 K++ + N++ TV L+G +GAGK+++ +I P SG + +G L + Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK 71 Query: 362 IRRFIAWVPQHPIMIAASVYDNIAI-----GCPHATRKEIQNAAMLAQAHEFIGCLENGY 416 I I P+ + +N+ + G P + E+ N I L N Sbjct: 72 IGSLIE---SPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNTG 118 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD---IENEQKIWKVLREQR 473 S G QR+ IA A+L +L+LDE + LD I+ +++ + EQ Sbjct: 119 KKKAKQ----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ- 173 Query: 474 RGRTTIFASHRLSAIQD-ADMVFVLHDQVI 502 G T I +SH LS +Q AD + ++ + V+ Sbjct: 174 -GITVILSSHILSEVQQLADHIGIISEGVL 202 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 66.0 bits (161), Expect = 2e-11 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 44/236 (18%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIF-SLILRFYDPC-------SGSVEIEGIDL 354 R+IL++++ ++PG AL+G +GAGK+++ +L +G V + G L Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 Query: 355 RLLSLEEIRRFIAWVPQ--HPIMIAASVYDNIAIGC-PHATR--------KEIQNAAMLA 403 + + R A +PQ P A S + + +G PHA R EI A LA Sbjct: 74 AAIDAPRLARLRAVLPQAAQP-AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA-LA 131 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSP---------ILLLDEMG 454 A G ++G LS G++ R+ AR + + P LLLDE Sbjct: 132 LA---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182 Query: 455 SALDIENEQKIW----KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506 +ALD+ ++ ++ ++ R+ G I L+A + AD + +L D IV G Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHG 237 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 65.9 bits (161), Expect = 3e-11 Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 15/217 (6%) Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDL----RLLSLEEIRR 364 +FT+ A+ G SG+GKT++ LI P G + + G L + + L +R Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 Query: 365 FIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423 I +V Q + SV N+ G A E + I L G +LG Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRL 128 Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR--GRTTIFA 481 LS G+ QR+AI RA+L +LL+DE +ALD + +I L G ++ Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188 Query: 482 SHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKSGF 517 SH L + AD V VL D + G E+ Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 65.6 bits (160), Expect = 3e-11 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 18/231 (7%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350 VY G + ++K V+ + AL+G SG GK+++ R + G V + Sbjct: 12 VYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLF 69 Query: 351 GIDLRLLSLE--EIRRFIAWVPQHPIMIA-ASVYDNIAIGCPH----ATRKEIQNAAMLA 403 G ++ ++ E+RR + V Q+P ++YDN+AIG ++KE+ A Sbjct: 70 GRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA 129 Query: 404 QAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 L + L D +LS GQ QR+ IARA+ ILL+DE + +D Sbjct: 130 LKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTA 186 Query: 464 KIWKVLREQRRGRTTIFASHR-LSAIQDADMVFVLHDQVIVEKGVHEELLK 513 KI ++L E ++ T + +H A + +D V L+ ++E G ++ + Sbjct: 187 KIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 65.2 bits (159), Expect = 4e-11 Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 36/218 (16%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIE 350 VY G +KNV + + A +G SG GK++I R D G V Sbjct: 18 VYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFH 75 Query: 351 GIDLRLLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGC---------PHATRKEIQNA 399 G +L ++ E+RR I V Q P S+YDNIA G + ++ A Sbjct: 76 GKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA 135 Query: 400 AMLAQAHEFIGCLENGYDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 A+ +D + L + LS GQ QR+ IARAI ++L+DE SA Sbjct: 136 AL--------------WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 Query: 457 LDIENEQKIWKVLREQRRGRTTIFASHRL-SAIQDADM 493 LD + +I +++ E + T I +H + A + +DM Sbjct: 182 LDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDM 219 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 65.2 bits (159), Expect = 4e-11 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 14/193 (7%) Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS 358 G+ + SIL V V+ GETIAL+G+SG+GK+++ +++ D SG V + G L + Sbjct: 19 GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD 78 Query: 359 LEEIR-----RFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCL 412 EE R + + +V Q ++I + +N+ + P R E + A + L Sbjct: 79 -EEARAKLRAKHVGFVFQSFMLIPTLNALENVEL--PALLRGESSRQSR-NGAKALLEQL 134 Query: 413 ENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ 472 G L LS G+ QR+A+ARA +L DE LD + KI +L Sbjct: 135 --GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192 Query: 473 RR--GRTTIFASH 483 R G T I +H Sbjct: 193 NREHGTTLILVTH 205 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 65.0 bits (159), Expect = 4e-11 Identities = 58/242 (23%), Positives = 116/242 (47%), Gaps = 21/242 (8%) Query: 288 VSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSG 345 ++F+ V Y K+ +R L +VN ++ G +A++G +G+GK+++ + P SG Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62 Query: 346 SVEIEGIDLRLLS-------LEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEI 396 +V I R+++ L+ +R+ + V Q P + +V +I G + E Sbjct: 63 TVTIGE---RVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + E +G E +L LS GQ++R+AIA + + +L+LDE + Sbjct: 120 DAKQKAREMIELVGLPEE----LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175 Query: 457 LDIENEQKIWKVLRE--QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELLK 513 LD + +++ ++ + + +G TT+ +H + A + AD + V+H + +G E+ Sbjct: 176 LDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 Query: 514 KS 515 Sbjct: 236 DP 237 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 64.9 bits (158), Expect = 5e-11 Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 21/194 (10%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-----PCSGSVEIEGIDL--RLLS 358 LKN+N + E A++G SG GK++ + R + +G + ++ + S Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENG- 415 +EE+R + V Q P S+YDN+ G P H I++ L + E L Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHG----IKDKKTLDEIVE--KSLRGAA 152 Query: 416 -YDTI---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 +D + L D A LS GQ QR+ IAR + + ++L+DE SALD + K+ ++++E Sbjct: 153 IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 Query: 472 QRRGRTTIFASHRL 485 ++ + I +H + Sbjct: 213 LKKDYSIIIVTHNM 226 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 64.9 bits (158), Expect = 5e-11 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 28/226 (12%) Query: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE---GIDLRLLSLEEI- 362 ++V+F + PGE + +VG+SG+GK+++ + P G+ G +L L L E Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 Query: 363 RRFIA---W--VPQHP---IMIAASVYDNI-----AIGCPHATRKEIQNAAMLAQAHEFI 409 RR + W V Q+P + + S NI AIG H + A AH+++ Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-------IRAAAHDWL 132 Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469 +E I D S G QR+ IAR ++ ++ +DE LD+ + ++ +L Sbjct: 133 EEVEIDPTRI-DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191 Query: 470 REQRR--GRTTIFASHRLSAIQ-DADMVFVLHDQVIVEKGVHEELL 512 R R G I +H L + A + V+ +VE G+ +++L Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 64.9 bits (159), Expect = 6e-11 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 12/182 (6%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 R + ++FT+ GE + L G +G+GKT++ LI P +G+++++G D+ + E Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA 74 Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGD 422 ++ ++ + A +V +N+ L + + G + Sbjct: 75 CHYLG--HRNAMKPALTVAENLEFW------AAFLGGEELD-IAAALEAV--GLAPLAHL 123 Query: 423 GAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGRTTIFA 481 +LS GQ +R+A+AR ++ + PI +LDE +ALD +++R +G I A Sbjct: 124 PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183 Query: 482 SH 483 +H Sbjct: 184 TH 185 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 64.2 bits (156), Expect = 7e-11 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSI---FSLILRFYDPCSGSVEIEGIDLRLLS---- 358 LKN+N ++ E A++G SG GK++ +L+++ + E+ +L Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 Query: 359 LEEIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATR-----KEIQNAAMLAQAHEFIGC 411 L E+R+ I V Q S++DN+A G P H T+ +EI ++ A Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYG-PRIHGTKNKKKLQEIVEKSLKDVA------ 140 Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 L + L A+ LS GQ QR+ IARA+ + +LL+DE SALD + +KI +++ + Sbjct: 141 LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200 Query: 472 QRRGRTTIFASHRL 485 + T + +H + Sbjct: 201 LKEKYTIVIVTHNM 214 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 63.9 bits (156), Expect = 9e-11 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 50/216 (23%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS---- 358 R++L ++ + G+ +A+VG SG GK+++ L+ P +G LL+ Sbjct: 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE---------LLAGTAP 75 Query: 359 LEEIR----------RFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408 L E R R + W V DN+ +G + + ++AA+ QA Sbjct: 76 LAEAREDTRLMFQDARLLPW---------KKVIDNVGLG----LKGQWRDAAL--QALAA 120 Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD----IENEQK 464 +G + + LS GQ QR+A+ARA++ +LLLDE ALD IE + Sbjct: 121 VGLADRA-----NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL 175 Query: 465 IWKVLREQRRGRTTIFASHRLS-AIQDADMVFVLHD 499 I + ++ G T + +H +S A+ AD V ++ + Sbjct: 176 IESLWQQH--GFTVLLVTHDVSEAVAMADRVLLIEE 209 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 63.6 bits (155), Expect = 1e-10 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 28/225 (12%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDP----CSGSVEIEGIDLRLLS 358 + ++ V+ T+Q G +ALVG SG+GK+ + L +G V ++G + + Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV---A 72 Query: 359 LEEIR-RFIAWVPQHP--------IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFI 409 +R R IA + Q+P M + +A+G P + A L A E + Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP-------ADDATLTAALEAV 125 Query: 410 GCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469 G LEN +L +S G +QR+ IA A+L ++P ++ DE + LD+ + +I +L Sbjct: 126 G-LENA-ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLL 183 Query: 470 RE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511 Q+R + +H + + AD V V+ IVE+G E L Sbjct: 184 ESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 63.1 bits (153), Expect = 2e-10 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 13/189 (6%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG---------IDLRL 356 L +V+ + + IA +G SG GK+++ R D G+ ++EG D ++ Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA-KVEGRLLYRDRNIYDSQI 94 Query: 357 LSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416 S++ +RR + V Q P S+Y+NIA P A + ++ + E Sbjct: 95 NSVK-LRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIWEEVK 152 Query: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476 D + G LS GQ QR+ IARAI +LL+DE SALD + +++ ++ E + Sbjct: 153 DKLKEKGTA-LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211 Query: 477 TTIFASHRL 485 T I +H + Sbjct: 212 TIIMVTHNM 220 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 62.8 bits (153), Expect = 2e-10 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 14/184 (7%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 R + + ++FT+ GE + + G +G GKT++ ++ P SG V G L +E Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEP 71 Query: 363 RRFIAWVPQHPIMIAA-SVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTIL 420 R I ++ P + S +N+ H + + A +G G++ + Sbjct: 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR-----TIEDALAAVGL--TGFEDLP 124 Query: 421 GDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-RRGRTTI 479 A LS GQ +R+A+AR L +P+ +LDE +ALD + +LR RG + Sbjct: 125 ---AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVL 181 Query: 480 FASH 483 +H Sbjct: 182 LTTH 185 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 62.5 bits (152), Expect = 3e-10 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 16/205 (7%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPC---SGSVEIEGIDLRLLSLEEI 362 L ++ V+PGE + L G++GAGK+++ ++ Y P G + G L+ ++ + Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDT 75 Query: 363 -RRFIAWVPQHPIMIAA-SVYDNIAIGCPHATRKEIQN-AAMLAQAHEFIGCLENGYDTI 419 R I + Q ++ SV +NI +G AM +A + L+ D + Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135 Query: 420 ---LGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRG 475 +GD GQ Q + IA+A+ K + +L+LDE S+L + + + ++R+ + G Sbjct: 136 TRPVGD----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191 Query: 476 RTTIFASHRLSAIQD-ADMVFVLHD 499 ++ SH+L+ ++ D + V+ D Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRD 216 Score = 56.0 bits (135), Expect = 2e-08 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 15/221 (6%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD-PCSGSVEI 349 R+++ R + +V+F+++ GE + + G GAG+T + + Y G+V I Sbjct: 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320 Query: 350 EG--IDLRLLSLEEIRRFIAWVPQ----HPIMIAASVYDNIAIGC--PHATRKEIQNAAM 401 G +D+R + IR IA VP+ H I+ V NI + + I AA Sbjct: 321 NGKPVDIRN-PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE 379 Query: 402 LAQAHEFIGCLENGYDTILGDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460 L I L+ T + LS G Q+ +A+ +L + +L+LDE +D+ Sbjct: 380 LQIIGSAIQRLK--VKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437 Query: 461 NEQKIWKVLRE-QRRGRTTIFASHRLSAIQD-ADMVFVLHD 499 + +I+K++ + + G I S L+ + +D V V+ + Sbjct: 438 AKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGE 478 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 61.8 bits (151), Expect = 5e-10 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 31/218 (14%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI--- 362 L +++ V PGE ++G +GAGKT++ +I P GSV G DL L +I Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77 Query: 363 ---RRFIAWVPQHP-IMIAASVYDNIAIGCP----------HATRKEIQNAAMLAQAHEF 408 R+F Q P + +V++N+ + P E ++ + + E Sbjct: 78 GIGRKF-----QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR--IEEVLET 130 Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468 IG + A LS GQ Q + I +++D +LLLDE + + E +K ++ Sbjct: 131 IGLADE-----ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL 185 Query: 469 LREQRRGRTTIFASHRLSAIQD-ADMVFVLHD-QVIVE 504 L+ + + H + ++ AD V VLH V+ E Sbjct: 186 LKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 61.5 bits (150), Expect = 5e-10 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 21/221 (9%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL--RFYDPCSGSVEIEGIDLRLLSL 359 + ILK VN TV+ GE A++G +G+GK+++ I Y+ SG++ +G DL L Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71 Query: 360 EEIRR---FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416 +E R F+A Q+P I +A R + +F+ L+ Sbjct: 72 DERARAGLFLA--FQYPEEIPGVSNLEFLRSALNARRSARGEEPL--DLLDFLKLLKAKL 127 Query: 417 DTILGDGA-------VHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL 469 + D S G+ +R I + L + + +LDE+ S LDI+ + + + + Sbjct: 128 ALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187 Query: 470 REQR-RGRTTIFASHR---LSAIQDADMVFVLHDQVIVEKG 506 R R+ + +H L+ I+ D V VL D IV+ G Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIK-PDYVHVLLDGRIVKSG 227 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 61.4 bits (149), Expect = 6e-10 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 12/157 (7%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 + ++F V GE + + GD+GAGKT++ ++ SG ++I+G + + + R Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG---KTATRGDRSR 82 Query: 365 FIAWVPQHPIMIA-ASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423 F+A++ P + A S +N+ C R+ Q M A +G L DT++ Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ---MPGSALAIVG-LAGYEDTLVR-- 136 Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460 LS GQ +R+A+AR L +P+ LLDE + LD+E Sbjct: 137 --QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 60.9 bits (148), Expect = 9e-10 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 10/171 (5%) Query: 296 VYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD--P---CSGSVEIE 350 +Y G +++VN ++P A +G SG GK+++ + R ++ P G V ++ Sbjct: 12 IYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69 Query: 351 GIDLRLLSLE--EIRRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407 G DL ++ +RR I V Q P S+ DN+ G + ++ L + Sbjct: 70 GEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSL 129 Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 L N L LS GQ QR+ IARAI + +LL+DE SALD Sbjct: 130 RGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 60.4 bits (147), Expect = 1e-09 Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 26/219 (11%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE---- 361 L V PG +ALVG++GAGK+++ ++ Y +GS+ G ++ + Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79 Query: 362 ----IRRFIAWVPQHPIMIAASVYDNIAIGCPHATR-KEIQNAAMLAQAHEFIGCLENGY 416 I + + +PQ + IA +NI +G R I M A+A + + L + Sbjct: 80 GIGIIHQELNLIPQ--LTIA----ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF 133 Query: 417 --DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL-DIENEQKIWKVLREQR 473 D ++G+ LS G+ Q + IA+ + +S ++++DE AL D E E +++V+RE + Sbjct: 134 SSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES-LFRVIRELK 188 Query: 474 -RGRTTIFASHRLSAI-QDADMVFVLHD-QVIVEKGVHE 509 +GR ++ SHRL I + D V V D Q I E+ V + Sbjct: 189 SQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227 Score = 33.4 bits (77), Expect = 0.13 Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEE-IRR 364 + +V+FT++ GE + + G GAG+T + ++ SG V ++G ++ S ++ + Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 Query: 365 FIAWVPQHP----IMIAASVYDNIAI-GCPHATRK--EIQNAAMLAQAHEFIGCLEN--- 414 I ++ + +++ SV +N+++ + +R +++A +FI L N Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR-LFNIKT 386 Query: 415 -GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452 + +G LS G Q++AIAR ++ +L+LDE Sbjct: 387 PSMEQAIGL----LSGGNQQKVAIARGLMTRPKVLILDE 421 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 59.9 bits (145), Expect = 2e-09 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 13/229 (5%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 +SF VS Y K L V+ + GE + L+G +GAGKT++ + SG + Sbjct: 6 LSFDKVSAHY---GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62 Query: 348 EIEGIDLRLLSLEEI-RRFIAWVPQ-HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405 +G D+ +I R +A VP+ + +V +N+A+G A R + Q + Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWV 120 Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 +E L G +S G+ Q +AI RA++ +LLLDE L Q+I Sbjct: 121 YELFPRLHERRIQRAGT----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176 Query: 466 WKVLREQRRGRTTIFASHRLS--AIQDADMVFVLHDQVIVEKGVHEELL 512 + + + R TIF + + A++ AD +VL + +V + + LL Sbjct: 177 FDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 59.1 bits (143), Expect = 3e-09 Identities = 57/204 (27%), Positives = 81/204 (39%), Gaps = 44/204 (21%) Query: 271 ISSPISSRTFPSP----VLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSG 326 ++ P FP+P +SF SF YPG + KN+NF + IA+VG +G Sbjct: 488 VNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNG 545 Query: 327 AGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAI 386 GK++I LI P SG+V ++R +A QH Sbjct: 546 IGKSTILKLISGELQPSSGTV---------FRSAKVR--MAVFSQH-------------- 580 Query: 387 GCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVH----------LSTGQIQRIA 436 H ++ + +L F G E LG V LS GQ R+A Sbjct: 581 ---HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 637 Query: 437 IARAILKDSPILLLDEMGSALDIE 460 A+ K ILLLDE + LD++ Sbjct: 638 FAKITFKKPHILLLDEPSNHLDLD 661 Score = 30.2 bits (68), Expect = 1.4 Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 428 STGQIQRIAIARAILKDSPILLLDEMGSALDI 459 S G RIA+ARA+ + +LLLDE + LD+ Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 58.7 bits (143), Expect = 4e-09 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 R + ++FT+ GE + + G +GAGKTS+ ++ P +G V +G +R +E Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEY 72 Query: 363 RRFIAWVPQHP-IMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421 + + ++ P I + +N+ + L +A +G G++ + Sbjct: 73 HQDLLYLGHQPGIKTELTALENLRFYQRLH---GPGDDEALWEALAQVGLA--GFEDVP- 126 Query: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALD 458 LS GQ +R+A+AR L +P+ +LDE +A+D Sbjct: 127 --VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 57.2 bits (138), Expect = 1e-08 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 21/208 (10%) Query: 282 SPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYD 341 S V ++ VS Y K ++ +++FT+ GE L+G +GAGK++I ++L Sbjct: 1 SNV--AIDLVGVSKSYGDKV---VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55 Query: 342 PCSGSVEIEGIDL----RLLSLEEIRRFIAWVPQHPIM-IAASVYDNIAIGCPHATRKEI 396 P G + + G + RL R I VPQ + +V +N+ + + Sbjct: 56 PDRGKITVLGEPVPSRARL-----ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR 110 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + A++ EF LE+ D + LS G +R+ +ARA++ D +L+LDE + Sbjct: 111 EIEAVIPSLLEF-ARLESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTG 165 Query: 457 LDIENEQKIWKVLRE-QRRGRTTIFASH 483 LD IW+ LR RG+T + +H Sbjct: 166 LDPHARHLIWERLRSLLARGKTILLTTH 193 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 56.9 bits (138), Expect = 1e-08 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 56/187 (29%) Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGI 352 V++ GK ++K+ + VQ G+ IAL+G +G GKT++ L+L SG + G Sbjct: 325 VNYQIDGKQ---LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380 Query: 353 DLRLLSLEEIRRFIAWVPQHPIMIAA-----SVYDNIAIGCPHATRKEIQNAAMLAQAHE 407 L +A+ QH A +V DN+A G ++E+ M+ Sbjct: 381 KLE----------VAYFDQHR---AELDPEKTVMDNLAEG-----KQEV----MV----- 413 Query: 408 FIGCLENGYDT-ILG---DGAVH----------LSTGQIQRIAIARAILKDSPILLLDEM 453 NG +LG D H LS G+ R+ +AR LK S +L+LDE Sbjct: 414 ------NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP 467 Query: 454 GSALDIE 460 + LD+E Sbjct: 468 TNDLDVE 474 Score = 49.6 bits (119), Expect = 2e-06 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 47/216 (21%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 +L N ++ E + LVG +GAGK+++ ++ G + E DL + L++ Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQ--- 73 Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRK------------------------------ 394 P + +VYD +A G Sbjct: 74 ------DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127 Query: 395 EIQNAAML-AQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEM 453 + N L + +E + L D L LS G +++ A+ RA++ + +LLLDE Sbjct: 128 DHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEP 183 Query: 454 GSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQ 489 + LDIE + + L+ +G + IF SH S I+ Sbjct: 184 TNHLDIETIEWLEGFLKT-FQG-SIIFISHDRSFIR 217 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 56.7 bits (137), Expect = 2e-08 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 13/215 (6%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE 350 ++S +PG L NVN V+P AL+G++GAGK+++ + Y SGS+ + Sbjct: 2 SNISKSFPGVKA---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 58 Query: 351 GIDLRLLSLEE-IRRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408 G ++ S +E + I+ V Q +++ SV DN+ +G + M Sbjct: 59 GKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAI 118 Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL---DIENEQKI 465 E D LS Q+Q I IA+A ++ I+++DE S+L ++ + I Sbjct: 119 FD--ELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176 Query: 466 WKVLREQRRGRTTIFASHRLSAI-QDADMVFVLHD 499 + L+E RG ++ SH++ I Q D + +L D Sbjct: 177 IRKLKE--RGCGIVYISHKMEEIFQLCDEITILRD 209 Score = 31.2 bits (71), Expect = 0.75 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 33/186 (17%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS-LEEIRR 364 +++V+F + GE + + G GA +T I + + +G++ + G + + E I Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLEN---------- 414 A V + + +Y + IG I N + +G L+N Sbjct: 324 GFALVTEE--RRSTGIYAYLDIG----FNSLISN---IRNYKNKVGLLDNSRMKSDTQWV 374 Query: 415 ---------GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 G+ T +G LS G Q++ I R +L IL+LDE +D+ + +I Sbjct: 375 IDSMRVKTPGHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430 Query: 466 WKVLRE 471 ++++ E Sbjct: 431 YQLIAE 436 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 56.3 bits (136), Expect = 2e-08 Identities = 51/223 (22%), Positives = 110/223 (49%), Gaps = 29/223 (13%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRF 365 +K ++FT++ G+T+A++G++G+GK+++ ++ +P SG + I+ L + Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88 Query: 366 IAWVPQHPIMIAASVYDNIAIG----CPHATRKEIQNAAMLAQAHEFIGCLENGYDTI-- 419 I + Q P + S+ I P N + + E + +T+ Sbjct: 89 IRMIFQDP---STSLNPRQRISQILDFPL-----RLNTDLEPEQRE-----KQIIETLRQ 135 Query: 420 ---LGDGAVH----LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE- 471 L D A + L+ GQ QR+ +ARA++ +++ DE ++LD+ ++ ++ E Sbjct: 136 VGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195 Query: 472 -QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512 +++G + I+ + L ++ +D V V+H +VE+G ++L Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 55.8 bits (135), Expect = 3e-08 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 28/165 (16%) Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI-RRFI 366 NVN V+ E ++L+G +GAGKT++F+ + FY P G++ + G + L +I R + Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 Query: 367 AWVPQH-----------PIMIAASVYDNIAI--------GCPHATRKEIQNAAMLAQAHE 407 QH +++A + A + + AA E Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL---E 139 Query: 408 FIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDE 452 +G LE A +L+ GQ +R+ IAR ++ IL+LDE Sbjct: 140 RVGLLE-----HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 55.6 bits (134), Expect = 3e-08 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 24/222 (10%) Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEI----EGIDL---RLLSLE 360 NV+ V+ GE +VG SGAGKT++ +I +P SG V + E +D+ Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361 Query: 361 EIRRFIAWVPQ-HPIMIAASVYDN----IAIGCPH--ATRKEIQNAAMLAQAHEFIGCLE 413 +R+I + Q + + +V DN I + P A K + M +G E Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKM-------VGFDE 414 Query: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR 473 + IL LS G+ R+A+A+ ++K+ I++LDE +D + + + + R Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474 Query: 474 R--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELL 512 +T I SH + + D D ++ D IV+ G EE++ Sbjct: 475 EEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516 Score = 55.6 bits (134), Expect = 3e-08 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 53/254 (20%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLI--LRFYDP-------------------- 342 +LKN++FT++ GE + ++G SGAGK+ + ++ + Y+P Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 Query: 343 ----------CSGSVEIEGIDLRLLSLEEIRRF---IAWVPQHPIMIAA--SVYDNIAIG 387 C G++E E +D LS + RR IA + Q + +V DN+ Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134 Query: 388 CPHA---TRKEIQNAA-MLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILK 443 ++ + A ++ L + I D LS G+ QR+ +AR + K Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQ-----LSHRITHIARD----LSGGEKQRVVLARQLAK 185 Query: 444 DSPILLLDEMGSALDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQ 500 + + L DE LD + + + L E + G + + SH I+D +D L + Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245 Query: 501 VIVEKGVHEELLKK 514 I E+G +E++ Sbjct: 246 EIKEEGTPDEVVAV 259 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 55.1 bits (133), Expect = 4e-08 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 43/204 (21%) Query: 292 SVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG 351 SVSF +R +L +V+ ++PG+ + L+G +GAGK+++ ++L P G ++ G Sbjct: 11 SVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG 65 Query: 352 IDLRLLSLEEIRRFIAWVPQH-------PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQ 404 LR I +VPQ P+ + + P +++I A Q Sbjct: 66 -KLR----------IGYVPQKLYLDTTLPLTVNRFLRLR-----PGTKKEDILPALKRVQ 109 Query: 405 AHEFIGCLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 A I D + LS G+ QR+ +ARA+L +L+LDE +D+ + Sbjct: 110 AGHLI------------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 Query: 464 KIWKVLREQRR--GRTTIFASHRL 485 ++ ++ + RR + SH L Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHDL 181 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 54.8 bits (132), Expect = 5e-08 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 28/238 (11%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 V R VSF + R I N++ TV G+ A++G SG GKT++ LI P G + Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64 Query: 348 EIEGIDLRLLS---LEEIRRFIAWVPQHPIMIA-ASVYDNIAIGCPHATR--KEIQNAAM 401 +G ++ +S L +R+ ++ + Q + +V+DN+A T+ + ++ + Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124 Query: 402 LAQAHEFIGCLENGYDTILGDGAVH-----LSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + + E +G GA LS G +R A+ARAI + +++ DE Sbjct: 125 MMKL-EAVGL----------RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVG 173 Query: 457 LDIENEQKIWKVLREQRR--GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511 D + K++ E G T + SH + + AD +++ D+ IV G + L Sbjct: 174 QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 54.5 bits (131), Expect = 6e-08 Identities = 56/268 (20%), Positives = 120/268 (44%), Gaps = 30/268 (11%) Query: 281 PSPVLGSVSFR--SVSFVYPGKSKRSI--LKNVNFTVQPGETIALVGDSGAGKTSIFSLI 336 P+P+ + R ++ V+ K + + L N+++T + + ++G+SG+GK+++ + Sbjct: 13 PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHF 72 Query: 337 LRFYDPCSGSVEIEGIDL----------------RLLSLEEIRRFIAWVPQHP--IMIAA 378 G++++ I + ++ + +E+RR ++ V Q P + Sbjct: 73 NGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 Query: 379 SVYDNIAIGCPHATRKEIQNAAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAI 437 ++ +I G P A + A LA+ + +G D+ L LS GQ +R+AI Sbjct: 133 TIEKDIMFG-PVALGVKKSEAKKLAKFYLNKMGL----DDSYLERSPFGLSGGQKRRVAI 187 Query: 438 ARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR-GRTTIFASHRLSAIQD-ADMVF 495 A + IL+ DE + LD + E ++ +++ + + +T +H + + + AD V Sbjct: 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 Query: 496 VLHDQVIVEKGVHEELLKKSGFYAHYHI 523 V+ I++ G E+ I Sbjct: 248 VMDKGKILKTGTPYEIFTDQHIINSTSI 275 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 54.2 bits (130), Expect = 7e-08 Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 37/235 (15%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEG--IDLRLLSLEEI 362 +LK +N LVG +G GK+++F + P G+V +G +D L + Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75 Query: 363 RRFIAWVPQHP--IMIAASVYDNIA-----IGCPHA-TRKEIQNAAMLAQAHEF----IG 410 R+ +A V Q P + + +IA +G P A + + A L A F I Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135 Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENE-QKIWKVL 469 CL S GQ +R+AIA A++ + LLLDE + LD Q I + Sbjct: 136 CL---------------SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180 Query: 470 REQRRGRTTIFASHRLSAIQD-ADMVFVL-HDQVIVEKGVHE-----ELLKKSGF 517 R +G I +SH + I + +D V+VL Q++ E E ++++G Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGL 235 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 54.3 bits (131), Expect = 8e-08 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 43/206 (20%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI-----------LRFYDPCSGSVEIEG 351 R IL N+++ V PGE +VG +GAGK+++ SLI L + GS E Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE--- 329 Query: 352 IDLRLLSLEEIRRFIAWVPQHPIM---IAASVYDNI------AIGCPHATRKEIQNAAML 402 ++ +I++ I +V + ++ SV + I +IG A Q A Sbjct: 330 ------TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQ- 382 Query: 403 AQAHEFIGCLENGYDTILGDGAVH-LSTGQIQRIA-IARAILKDSPILLLDEMGSALDIE 460 +++ L G D D H LS GQ QR+A I RA++K +L+LDE LD Sbjct: 383 ----QWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPL 435 Query: 461 NEQKIWKVLREQ--RRGRTT-IFASH 483 N Q + + + + G T +F SH Sbjct: 436 NRQLVRRFV-DVLISEGETQLLFVSH 460 Score = 46.9 bits (112), Expect = 1e-05 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 34/222 (15%) Query: 310 NFTVQPGETIALVGDSGAGKTSIF-----SLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 + T+ G++ A VG +G+GK+++ L L SG + + + LS E++++ Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPL-----LSGERQSQFSHITRLSFEQLQK 77 Query: 365 FIA--WVPQHPIMIAASVYDNIAIGCPHATRKEIQNA-------AMLAQAHEFIGCLENG 415 ++ W + M++ D T + IQ+ LAQ +F G Sbjct: 78 LVSDEWQRNNTDMLSPGEDDT-----GRTTAEIIQDEVKDPARCEQLAQ--QF------G 124 Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRR 474 +L +LSTG+ ++ + +A++ + +L+LDE LD+ + Q++ ++L + Sbjct: 125 ITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS 184 Query: 475 GRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLKKS 515 G T + +R I D VL D + E G EE+L+++ Sbjct: 185 GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 53.0 bits (128), Expect = 2e-07 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 28/225 (12%) Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL----EEIR 363 +V+F + PGE + +VG+SG+GKT++ + + P +G V D +L L E R Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 Query: 364 RFIA---W--VPQHP---IMIAASVYDNI-----AIGCPHATRKEIQNAAMLAQAHEFIG 410 R + W V QHP + + S NI A+G H + A A +++ Sbjct: 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD-------IRATAGDWLE 136 Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470 +E I D S G QR+ IAR ++ ++ +DE LD+ + ++ +LR Sbjct: 137 RVEIDAARI-DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195 Query: 471 EQRR--GRTTIFASHRLS-AIQDADMVFVLHDQVIVEKGVHEELL 512 R G + +H L+ A A + V+ +VE G+ +++L Sbjct: 196 GLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 52.8 bits (127), Expect = 2e-07 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 55/240 (22%) Query: 308 NVNFTVQPGETIALVGDSGAGKTSIFSL-ILRFYD-P---CSGSVEIEGIDLRLLSLEEI 362 ++++V+ GE + +VG+SG+GK S+ SL I+ D P + +E G DL+ +S +E Sbjct: 25 RISYSVKQGEVVGIVGESGSGK-SVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 Query: 363 RRFI----AWVPQHP-------------IMIAASVYDNIAIGCPHATRKEIQNAAMLAQA 405 R + A + Q P IM A V+ G TR++ +A Sbjct: 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ----GGNKKTRRQ--------RA 131 Query: 406 HEFIGCLENGYDTILG--------DGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + + +G D H LS G QR+ IA AI +L+ DE +A Sbjct: 132 IDLL--------NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTA 183 Query: 457 LDIENEQKIWKVLRE--QRRGRTTIFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEELLK 513 LD+ + +I ++L E Q+ + +H L+ + + A + V++ +VE G ++ + Sbjct: 184 LDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 52.4 bits (125), Expect = 3e-07 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 59/199 (29%) Query: 315 PGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPI 374 PGE I +VG G+GKT++ + R P G V + E+I Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------IDGEDILE---------- 43 Query: 375 MIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQR 434 L+ I+G S R Sbjct: 44 -----------------------------------EVLDQLLLIIVGGKKASGSGELRLR 68 Query: 435 IAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQ-------RRGRTTIFASHRLSA 487 +A+A A +L+LDE+ S LD E E + + + + T I ++ Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128 Query: 488 IQDADMVFVLHDQVIVEKG 506 + A + ++++ Sbjct: 129 LGPALLRRRFDRRIVLLLI 147 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 51.9 bits (124), Expect = 4e-07 Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 30/202 (14%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLI--LRFYDPCSGS-VEIEGIDLRLLS--LE 360 L V+ + GE +AL+G SG+GK+++ + L D +GS +E+ G ++ Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 Query: 361 EIRRFIAWV----PQHPIMIAASVYDNIAIGCPHAT-----------RKEIQNAAMLAQA 405 +IR+ A Q ++ SV +N+ IG +T R++ Q A QA Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL---QA 136 Query: 406 HEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 +G + + + LS GQ QR+AIARA+++ + ++L DE ++LD E+ + + Sbjct: 137 LTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191 Query: 466 WKVLRE--QRRGRTTIFASHRL 485 LR+ Q G T + H++ Sbjct: 192 MDTLRDINQNDGITVVVTLHQV 213 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 51.0 bits (123), Expect = 7e-07 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 426 HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRL 485 LS G++QR+AIA A+L+D+ DE S LDI + +++RE G+ + H L Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271 Query: 486 SAIQD--ADMVFVL 497 A+ D AD V + Sbjct: 272 -AVLDYLADNVHIA 284 Score = 44.0 bits (105), Expect = 1e-04 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 LE D + D LS G++QR+AIA + +D+ + LLDE + LD+E + K +R Sbjct: 443 LERLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498 Query: 472 --QRRGRTTIFASHRLSAIQ---DADMVF 495 + R T + H + I D MVF Sbjct: 499 IAEEREATALVVDHDIYMIDYISDRLMVF 527 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 50.9 bits (122), Expect = 9e-07 Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 44/262 (16%) Query: 291 RSVSFVYPGKSKRSI--LKNVNFTVQPGETIALVGDSGAGKTSIF----SLILRFYDPCS 344 +++ ++ K + L NV+ + GE IA++G +G+GKT+ +L+L P + Sbjct: 6 KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL----PDT 61 Query: 345 GSV----------------EIEGIDL--------RLLSLEEIRRFIAWVPQHP--IMIAA 378 G++ E L ++ ++EIRR + V Q + Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121 Query: 379 SVYDNIAIGCPHATRKEIQNAAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAI 437 ++ +I G P + + A A + E +G E+ L LS GQ +R+A+ Sbjct: 122 TIEKDIIFG-PVSMGVSKEEAKKRAAKYIELVGLDES----YLQRSPFELSGGQKRRVAL 176 Query: 438 ARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRL-SAIQDADMVF 495 A + + L+ DE + LD + ++I ++ ++G+T I +H L + ++ Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 Query: 496 VLHDQVIVEKGVHEELLKKSGF 517 D I++ G ++L + F Sbjct: 237 FFKDGKIIKDGDTYDILSDNKF 258 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 50.3 bits (121), Expect = 1e-06 Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 43/227 (18%) Query: 306 LKNVNFTVQ---PGETI-ALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLS--- 358 L ++ TV P + I A+ G SGAGKTS+ + I P G + + G R+L Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNG---RVLFDAE 66 Query: 359 ----LEEIRRFIAWVPQ------HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEF 408 L +R I +V Q H V N+ G +M+AQ + Sbjct: 67 KGICLPPEKRRIGYVFQDARLFPH-----YKVRGNLRYGM---------AKSMVAQFDKI 112 Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKV 468 + L G + +L LS G+ QR+AI RA+L +LL+DE ++LD+ ++++ Sbjct: 113 VALL--GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 Query: 469 LREQRRGRTT----IFASHRLSAI-QDADMVFVLHDQVIVEKGVHEE 510 L +R R ++ SH L I + AD V VL + G EE Sbjct: 171 L--ERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 50.0 bits (119), Expect = 1e-06 Identities = 52/247 (21%), Positives = 105/247 (42%), Gaps = 22/247 (8%) Query: 286 GSVSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSL-----ILR 338 + +VS+ Y K+ + L N + T + + ++G +G+GK+++ L I Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64 Query: 339 FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHP--IMIAASVYDNIAIGCPHATRKEI 396 G I ++ ++ +R+ I V Q P + ++ +IA G + + Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + + + + + E+ + LS GQ +R+A+A I D L+LDE Sbjct: 125 EAYKKVPELLKLVQLPED----YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180 Query: 457 LDIENEQKIWKVLRE--QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKG------V 507 LD + E+ + + + I +H + + + AD V V+H+ ++ G Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 Query: 508 HEELLKK 514 ++ELL K Sbjct: 241 NQELLTK 247 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 49.6 bits (119), Expect = 2e-06 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 24/224 (10%) Query: 288 VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR-FYDPCSGS 346 + R+V+F Y + S + +N T++ GE + L+G +G+GK S +++L Y P SG Sbjct: 323 LELRNVTFAY-QDNGFS-VGPINLTIKRGELLFLIGGNGSGK-STLAMLLTGLYQPQSGE 379 Query: 347 VEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406 + ++G + E+ R+ ++V+ + + E + A A Sbjct: 380 ILLDGKPVTAEQPEDYRKLF-----------SAVFTDFHL-FDQLLGPEGK-PANPALVE 426 Query: 407 EFIGCLENGYDTILGDGAV---HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 +++ L+ + L DG + LS GQ +R+A+ A+ ++ ILLLDE + D + Sbjct: 427 KWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486 Query: 464 KIWKVL--REQRRGRTTIFA-SHRLSAIQDADMVFVLHDQVIVE 504 + ++VL Q G+ TIFA SH AD + + + + E Sbjct: 487 EFYQVLLPLLQEMGK-TIFAISHDDHYFIHADRLLEMRNGQLSE 529 Score = 28.4 bits (64), Expect = 4.8 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 10 DVSLYLWGMFVLLLLAVASSLRYYCA-TMLGERMILFMQRDVIAKII 55 L L LLLL +A +L A T LG + ++ + I +I+ Sbjct: 46 TSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRIL 92 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 47.9 bits (114), Expect = 7e-06 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 19/219 (8%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL--RFYDPCSGSVEIEGIDLRLLSLE 360 ++IL+ +N V+PGE A++G +G+GK+++ + + Y+ G+VE +G DL LS E Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 Query: 361 EIRR-----FIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM-----LAQAHEFIG 410 + R F+A+ Q+P+ I +A R + E I Sbjct: 74 D--RAGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIA 129 Query: 411 CLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLR 470 L+ D + V S G+ +R I + + + + +LDE S LDI+ + + + Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189 Query: 471 EQRRG-RTTIFASH--RLSAIQDADMVFVLHDQVIVEKG 506 R G R+ I +H R+ D V VL+ IV+ G Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 45.5 bits (108), Expect = 4e-05 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 42/212 (19%) Query: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL 359 K KR IL NV+ V+PG AL+G SGAGKT++ +++ + + V G RL++ Sbjct: 773 KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVL---AERVTTGVITGGD--RLVNG 827 Query: 360 EEI----RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415 + +R I +V Q + + S R+ ++ +A L Q + Sbjct: 828 RPLDSSFQRSIGYVQQQDLHLPTS-----------TVRESLRFSAYLRQPKSVSKSEKME 876 Query: 416 Y--------------DTILGDGAVHLSTGQIQRIAIA-RAILKDSPILLLDEMGSALDIE 460 Y D ++G L+ Q +R+ I + K +L LDE S LD Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD-- 934 Query: 461 NEQKIWKVLREQRR----GRTTIFASHRLSAI 488 Q W + + R+ G+ + H+ SAI Sbjct: 935 -SQTAWSICKLMRKLADHGQAILCTIHQPSAI 965 Score = 42.8 bits (101), Expect = 2e-04 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 43/228 (18%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKT----SIFSLILRFYDPCSGSVEIEGIDLRLL 357 ILK ++ ++PGE ++G G+G + +I S F+ G + +GI Sbjct: 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI----- 127 Query: 358 SLEEIRRF-------IAWVPQH-PIMIAASVYDNI--AIGCPHATRKEIQNAAMLAQAHE 407 + EEI++ A H P + +V + + A C K QN E Sbjct: 128 TPEEIKKHYRGDVVYNAETDVHFPHL---TVGETLDFAARC-----KTPQNRPDGVSREE 179 Query: 408 FIG----------CLENGYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSA 456 + L + +T +G+ V +S G+ +R++IA A L + I D Sbjct: 180 YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRG 239 Query: 457 LDIENEQKIWKVLREQRR-GRTTIFASHRLSAIQDADMVFVLHDQVIV 503 LD + + L+ TT ++ Q + + L D+VIV Sbjct: 240 LDSATALEFIRALKTSANILDTTPL----VAIYQCSQDAYELFDKVIV 283 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 45.3 bits (107), Expect = 4e-05 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 20/211 (9%) Query: 302 KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL-RFYDPC-SGSVEIEGIDLRLLSL 359 +R+IL V PGE +A++G SG+GK+++ + + R +G++ R + Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTK 136 Query: 360 EEIRRFIAWVPQHPIMIAASVYDNIAIGC-----PHATRKEIQNAAMLAQAHEFIGCLEN 414 + ++R +V Q I+ + C P + K+ + + E L Sbjct: 137 QILKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL--GLTK 193 Query: 415 GYDTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-Q 472 +TI+G+ + +S G+ +R++IA +L + +L+LDE S LD ++ L Sbjct: 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253 Query: 473 RRGRTTIFASHRLSAIQDADMVFVLHDQVIV 503 ++G+T + + H Q + V+ + D V+V Sbjct: 254 QKGKTIVTSMH-----QPSSRVYQMFDSVLV 279 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 44.9 bits (106), Expect = 5e-05 Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 20/198 (10%) Query: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360 ++ L +++ T P + G +G GK+S+ +I P SG++ + ++ ++ Sbjct: 11 IEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-- 68 Query: 361 EIRRFIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQA--HEFIGCLENGYD 417 + + ++ + + + +V++N+ EI N+A A H F Sbjct: 69 --KPYCTYIGHNLGLKLEMTVFENLKFW------SEIYNSAETLYAAIHYF------KLH 114 Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWK-VLREQRRGR 476 +L + LS+G + +AIAR I S + LLDE+ + L EN + ++ + G Sbjct: 115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGG 174 Query: 477 TTIFASHRLSAIQDADMV 494 + +SH S+I+ A ++ Sbjct: 175 IVLLSSHLESSIKSAQIL 192 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 44.9 bits (107), Expect = 6e-05 Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 52/203 (25%) Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGI 352 VS V P K + ILK+++ + PG I ++G +GAGK S +LR + G+ Sbjct: 10 VSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGK----STLLRI---------MAGV 54 Query: 353 DLRLLSLEEIRRF----IAWVPQHPIM-IAASVYDNIAIGCPHATRK------------- 394 D E R + ++PQ P + +V +N+ G Sbjct: 55 DKEFNG--EARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE 112 Query: 395 -------------EIQNAAMLAQAHEFIGCLENGYDTIL---GDGAV-HLSTGQIQRIAI 437 E+Q A A + LE D + D V LS G+ +R+A+ Sbjct: 113 PDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVAL 172 Query: 438 ARAILKDSPILLLDEMGSALDIE 460 R +L +LLLDE + LD E Sbjct: 173 CRLLLSKPDMLLLDEPTNHLDAE 195 Score = 44.5 bits (106), Expect = 6e-05 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 30/187 (16%) Query: 281 PSPVLGS--VSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338 P P LG + ++S + + ++ +++F + PG + ++G +GAGK+++F +I Sbjct: 314 PGPRLGDKVIEAENLSKGF---GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 Query: 339 FYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHAT--RKEI 396 P SG+++I G ++L +++ R + P +V++ I+ G ++E+ Sbjct: 371 QEQPDSGTIKI-GETVKLAYVDQSRDALD--PNK------TVWEEISGGLDIIQLGKREV 421 Query: 397 QNAAMLAQAHEFIGCLENGYDTILGDG---AVHLSTGQIQRIAIARAILKDSPILLLDEM 453 + A + F G D LS G+ R+ +A+ + +LLLDE Sbjct: 422 PSRAYVG-RFNFKG----------SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 Query: 454 GSALDIE 460 + LD+E Sbjct: 471 TNDLDVE 477 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 44.4 bits (105), Expect = 7e-05 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 20/183 (10%) Query: 310 NFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWV 369 +F V G + + G +G GK+S+F ++ + P G RL + + F +V Sbjct: 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGG--------RLTKPAKGKLF--YV 520 Query: 370 PQHPIMIAASVYDNI--AIGCPHATRKEIQNA---AMLAQAH-EFIGCLENGYDTILGDG 423 PQ P M ++ D I R+ + + +L I E G+ + D Sbjct: 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS-AVQDW 579 Query: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASH 483 LS G+ QRIA+AR +LDE SA+ ++ E ++++ RE G T SH Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSH 637 Query: 484 RLS 486 R S Sbjct: 638 RKS 640 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 44.6 bits (105), Expect = 7e-05 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 25/196 (12%) Query: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 +L+ ++F + G + L G +GAGKT++ LI +P G + E + I++ Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER--------QSIKK 67 Query: 365 FIAWVPQHPIMIAASVYDNIAIGCPHATRKE-------IQNAAMLAQAHEFIGCLENGYD 417 + + + N P+ T +E A+ + LE+ D Sbjct: 68 DLCTYQKQLCFVGHRSGIN-----PYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID 122 Query: 418 TILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQR-RGR 476 G LS+GQ +++A+ R + + + LLDE ALD + I ++E R +G Sbjct: 123 YPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178 Query: 477 TTIFASHRLSAIQDAD 492 + SH+ + AD Sbjct: 179 AVLLTSHQDLPLNKAD 194 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 43.9 bits (104), Expect = 1e-04 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 69/251 (27%) Query: 310 NFTVQPGETIALVGDSGAGKT-SIFSL--ILRFYDPCSGSVEIEGIDLRLLSLEEIRRF- 365 NF+++ GET+ +VG+SG+GK+ + F+L +L GS G ++ L +E+ + Sbjct: 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLR 95 Query: 366 ---IAWVPQHPIMIAASVYDNI----------------------------AIGCPHATRK 394 I+ + Q P M + + Y + A+ P A RK Sbjct: 96 AEQISMIFQDP-MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA-RK 153 Query: 395 EIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMG 454 M HEF G G QR+ IA A+L +L+ DE Sbjct: 154 R-----MKMYPHEFSG-------------------GMRQRVMIAMALLCRPKLLIADEPT 189 Query: 455 SALDIENEQKIWKVLREQRRGRTT--IFASHRLSAIQD-ADMVFVLHDQVIVEKGVHEEL 511 +ALD+ + +I +L E +R T I +H L + D V V++ +E G ++ Sbjct: 190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249 Query: 512 LKKSGFYAHYH 522 FY H Sbjct: 250 -----FYQPSH 255 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 42.5 bits (100), Expect = 2e-04 Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 38/232 (16%) Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLI--------------LRFYDPCSGSVEIEGIDL 354 V+ T+ GE LVG+SG+GK+ I I +RF D IDL Sbjct: 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD----------IDL 75 Query: 355 RLLSLEEIRRFIA-------WVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE 407 LS E R+ + PQ + + V + P T K + Sbjct: 76 LRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRR 135 Query: 408 FIGCLE----NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ 463 I L + + L+ G+ Q++ IA A+ +L+ DE +A++ + Sbjct: 136 AIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQA 195 Query: 464 KIWKVLRE--QRRGRTTIFASHRLSAI-QDADMVFVLHDQVIVEKGVHEELL 512 +I+++L Q T + SH L + Q AD + VL+ VE +EL+ Sbjct: 196 QIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 42.5 bits (100), Expect = 3e-04 Identities = 63/253 (24%), Positives = 100/253 (39%), Gaps = 62/253 (24%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 R +L N T+ PG+ + LVG +G GK+++ +L+ GS G Sbjct: 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----------- 62 Query: 363 RRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHE-----FIGCLENGYD 417 +AWV Q + + + G R+ Q A L A+E I + D Sbjct: 63 NWQLAWVNQETPALPQPALEYVIDG----DREYRQLEAQLHDANERNDGHAIATIHGKLD 118 Query: 418 TI---------------LGDGAVHL-------STGQIQRIAIARAILKDSPILLLDEMGS 455 I LG L S G R+ +A+A++ S +LLLDE + Sbjct: 119 AIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTN 178 Query: 456 ALDIENEQKIW--KVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKGVH---EE 510 LD+ + IW K L+ + T I SH D D + IV+K +H + Sbjct: 179 HLDL--DAVIWLEKWLKSYQ--GTLILISH------DRDFL-----DPIVDKIIHIEQQS 223 Query: 511 LLKKSGFYAHYHI 523 L + +G Y+ + + Sbjct: 224 LFEYTGNYSSFEV 236 Score = 37.8 bits (88), Expect = 0.006 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 279 TFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILR 338 + P+P+L + V G R IL ++ + PG I L+G +GAGK+++ L+ Sbjct: 307 SLPNPLL------KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360 Query: 339 FYDPCSGSVEI-EGIDL 354 P SG + + +GI L Sbjct: 361 ELAPVSGEIGLAKGIKL 377 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 42.6 bits (100), Expect = 3e-04 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 40/196 (20%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE----------GIDLR 355 L N++F V GE + ++G +G+GK+++ +LI P G+V+I+ G++ + Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 Query: 356 LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAM-LAQAHEFIGCLEN 414 L +E I + +G KEI + A +FI Sbjct: 100 LTGIENIE-----------------LKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVK 142 Query: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QR 473 Y S+G R+ A ++ + IL++DE S D +K + E + Sbjct: 143 TY-----------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE 191 Query: 474 RGRTTIFASHRLSAIQ 489 +G+T F SH LS ++ Sbjct: 192 QGKTIFFISHSLSQVK 207 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 40.2 bits (94), Expect = 0.001 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 24/202 (11%) Query: 299 GKSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVE---IEGIDLR 355 + + +L+ V +PG AL+G SGAGKT++ D +G IEG D+R Sbjct: 889 TEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIR 940 Query: 356 LLSL----EEIRRFIAWVPQHPI-----MIAASVYDNIAIGCPHATRKEIQNAAMLAQAH 406 + E R + Q+ I + S+ + + P KE + + + Sbjct: 941 ISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKE-EKMMFVDEVM 999 Query: 407 EFIGCLENGYDTILG-DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKI 465 E + L+N D I+G G LST Q +R+ IA ++ + I+ +DE S LD + Sbjct: 1000 ELVE-LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058 Query: 466 WKVLREQ-RRGRTTIFASHRLS 486 + +R GRT + H+ S Sbjct: 1059 MRTVRNTVDTGRTVVCTIHQPS 1080 Score = 33.7 bits (77), Expect = 0.11 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 417 DTILGDGAVH-LSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRR 474 DTI+GD + +S GQ +R+ I+ + L +DE+ + LD +I K L++ Sbjct: 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385 Query: 475 GRTTIFASHRLSAIQDADMVFVLHDQVIV 503 T+ +S +Q A F L D +I+ Sbjct: 386 TEATVL----MSLLQPAPETFDLFDDIIL 410 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 39.9 bits (94), Expect = 0.002 Identities = 15/45 (33%), Positives = 30/45 (66%) Query: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSV 347 + KN+N ++ GE +A++G++G GKT++ ++ +P SG+V Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376 Score = 30.2 bits (69), Expect = 1.5 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 434 RIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASH 483 R+ +A+A+ + ILLLDE + LDI + + VL E R T I SH Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISH 210 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 37.4 bits (88), Expect = 0.008 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 9/73 (12%) Query: 281 PSPVLGS--VSFRSVSFVYPGKS--KRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLI 336 P P LG + ++S KS R ++ +++F++ PG + ++G +GAGK+++F +I Sbjct: 316 PGPRLGDKVIEAENLS-----KSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMI 370 Query: 337 LRFYDPCSGSVEI 349 P SG+++I Sbjct: 371 TGQEQPDSGTIKI 383 Score = 36.3 bits (85), Expect = 0.023 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Query: 293 VSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTSI 332 VS V P K + ILK+++ + PG I ++G +GAGK+++ Sbjct: 12 VSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTL 49 Score = 30.9 bits (71), Expect = 0.78 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 421 GDGAV-HLSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460 D V LS G+ +R+A+ R +L+ +LLLDE + LD E Sbjct: 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 37.1 bits (86), Expect = 0.010 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 38/196 (19%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIE----------GIDLR 355 L +++ G+ I LVG +G+GK+++ ++I P G V+ G+ + Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99 Query: 356 LLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENG 415 L +E I + C RKEI+ AM + EF E Sbjct: 100 LTGIENIE--------------------FKMLCMGFKRKEIK--AMTPKIIEFSELGEFI 137 Query: 416 YDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQK-IWKVLREQRR 474 Y + S+G ++ + I + IL++DE S D QK + K+ + + Sbjct: 138 YQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 Query: 475 GRTTIFASHRLSAIQD 490 +T F SH L ++ Sbjct: 193 NKTIFFVSHNLGQVRQ 208 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 34.1 bits (79), Expect = 0.087 Identities = 9/20 (45%), Positives = 16/20 (80%) Query: 313 VQPGETIALVGDSGAGKTSI 332 + G+T+AL+G SG GK+++ Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211 >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional. Length = 863 Score = 33.1 bits (75), Expect = 0.16 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%) Query: 291 RSVSFVYPGKSKRSILKNVNFTVQPGET--IALVGDSGAGKTSIFSLIL-RFYDPCSGSV 347 R SFV+P ++ +P T IAL G +G+GK+S+ L+ R C + Sbjct: 7 RERSFVHPRTRCVAVRARTVLQCRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNT- 65 Query: 348 EIEGIDLRLLSLEEIRRFIAWVPQHPIMIAASVYDNIAIGC---PHATRKEIQNAAMLAQ 404 G R +L +RR Q + S + A+GC PHAT + A + AQ Sbjct: 66 ---GSFYRAFTLAALRRVSELAVQ---ACSPSPDPDAAVGCAAVPHATNLDTSYAPLTAQ 119 >gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 Score = 31.9 bits (72), Expect = 0.40 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 27/99 (27%) Query: 421 GDGAVHL----STGQ------IQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVL- 469 GD A+ + S GQ I R+A+A + I+ LDE + LD EN + + L Sbjct: 1190 GDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALV 1249 Query: 470 ---REQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEK 505 + + + R + ++ + HD+ VE Sbjct: 1250 EIIKSRSQQR-------------NFQLLVITHDEDFVEL 1275 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 31.7 bits (72), Expect = 0.54 Identities = 12/27 (44%), Positives = 18/27 (66%) Query: 306 LKNVNFTVQPGETIALVGDSGAGKTSI 332 LKN++ P E + L G SG+GK+S+ Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSL 42 Score = 30.2 bits (68), Expect = 1.5 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Query: 420 LGDGAVHLSTGQIQRIAIARAILKDSP---ILLLDEMGSALDIENEQKIWKVLRE-QRRG 475 LG LS G+IQR+ +A +L S + +LDE + L + + + VL+ +G Sbjct: 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862 Query: 476 RTTIFASHRLSAIQDADMVFVL 497 T + H + ++ AD V L Sbjct: 863 HTVVIIEHNMHVVKVADYVLEL 884 Score = 29.8 bits (67), Expect = 1.9 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 420 LGDGAVHLSTGQIQRIAIARAIL---KDSPILLLDEMGSALDIENEQKIWKVLREQ-RRG 475 LG LS + I IA+ + K + LLDE+ ++LD + + + LR G Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752 Query: 476 RTTIFASHRLSAIQDAD 492 + I+ H + ++ AD Sbjct: 1753 HSVIYIDHDPALLKQAD 1769 >gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164 Score = 31.2 bits (71), Expect = 0.68 Identities = 17/52 (32%), Positives = 25/52 (48%) Query: 441 ILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDAD 492 K SP DE+ LD N +++ K++RE+ I S R I+ AD Sbjct: 1093 RYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYAD 1144 >gnl|CDD|184938 PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional. Length = 553 Score = 31.1 bits (71), Expect = 0.71 Identities = 11/21 (52%), Positives = 17/21 (80%) Query: 484 RLSAIQDADMVFVLHDQVIVE 504 RL+ DA++VF +HD+V+VE Sbjct: 489 RLAEGLDAELVFFVHDEVVVE 509 >gnl|CDD|185327 PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FhlA; Provisional. Length = 686 Score = 30.2 bits (68), Expect = 1.5 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 15/88 (17%) Query: 435 IAIARAILKDSPILLLDEMGSALDIE-----NEQKIWKVLREQRRGRTTIFASHRLSAIQ 489 +AI A+L L +DE+ S + E + I VLR R+ + I+++H L Sbjct: 188 VAITNAVLSR---LDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYL---- 240 Query: 490 DADMVFVLHDQVIV-EKGVHEELLKKSG 516 D H+Q V E G E + KS Sbjct: 241 --DKQHPAHEQSEVDEAGTLTERVFKSK 266 >gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. Length = 180 Score = 29.8 bits (68), Expect = 1.6 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGSV----------EIEGIDLRLLSLEEIRRFIA 367 I + G SG GK+++ +L S+ E++G+D +S EE IA Sbjct: 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIA 62 >gnl|CDD|173315 PTZ00014, PTZ00014, myosin-A; Provisional. Length = 821 Score = 30.0 bits (68), Expect = 1.7 Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 317 ETIALVGDSGAGKTSIFSLILRFY 340 +TI + G+SGAGKT I+R++ Sbjct: 184 QTIIVSGESGAGKTEATKQIMRYF 207 >gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional. Length = 334 Score = 29.8 bits (67), Expect = 1.8 Identities = 10/18 (55%), Positives = 15/18 (83%) Query: 321 LVGDSGAGKTSIFSLILR 338 +VGDSG GK+S+ LI++ Sbjct: 26 VVGDSGVGKSSLVHLIVK 43 >gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional. Length = 559 Score = 29.6 bits (66), Expect = 1.9 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Query: 312 TVQP---GETIALVGDSGAGK-TSIFSLILRF 339 V P G IALVG +GAGK T+I L RF Sbjct: 343 PVDPLERGGVIALVGPTGAGKTTTIAKLAQRF 374 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 29.7 bits (68), Expect = 1.9 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 11/42 (26%) Query: 427 LSTGQIQR---IAI----ARAILKDS---PILLLDEMGSALD 458 STGQ Q+ +A+ A + +++ PILLLD++ S LD Sbjct: 274 GSTGQ-QKLLLLALKLAEAELLKEETGEAPILLLDDVASELD 314 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 29.6 bits (67), Expect = 2.0 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%) Query: 427 LSTGQIQRIAIAR--AIL--KDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFAS 482 LS G+ A+A AI K +P +LDE+ + LD N ++ +L+E + I + Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVIT 1149 Query: 483 HRLSAIQDADMVFVLHDQVIVEKGV 507 H ++ AD L+ + EKGV Sbjct: 1150 HNKGTMEVADQ---LYGVTMQEKGV 1171 >gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional. Length = 762 Score = 29.4 bits (66), Expect = 2.5 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Query: 409 IGCLENGYDTILGDGAVHLSTGQIQRIAIAR 439 I LE+ Y L D HL+ IQR+ IAR Sbjct: 128 IISLESKYQQALKDLYTHLTP--IQRVNIAR 156 >gnl|CDD|183249 PRK11637, PRK11637, AmiB activator; Provisional. Length = 428 Score = 29.3 bits (66), Expect = 2.7 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 304 SILKNVNFTVQPGETIALVGDSGA-GKTSIFSLILR 338 S L +V V+ G+ IALVG SG G+ S++ I R Sbjct: 380 SALVSVGAQVRAGQPIALVGSSGGQGRPSLYFEIRR 415 >gnl|CDD|161878 TIGR00437, feoB, ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. Length = 591 Score = 28.9 bits (65), Expect = 2.9 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 168 EAIRLYDIQSQKTYKGFLRSALIRTCIACFVIFFVSCGIFIVFLIGAHYVATAEMPRGKL 227 + D K R L R +F + + FL+G V E L Sbjct: 226 SPTEIADEDRVLVEKSIGRKILDRFLGLPIFLFVMFILFLLTFLVGQPLVDLIETGFSFL 285 Query: 228 AEFVVYAFIFFASIRSCL--GFIGGI 251 +E V +FI + S L G IGG+ Sbjct: 286 SE-AVKSFIGNYWLASLLGDGLIGGV 310 >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1042 Score = 28.8 bits (64), Expect = 3.9 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 10/46 (21%) Query: 300 KSKRSILKNVN---------FTVQPGETIALVGDSGAGKTSIFSLI 336 K R LKN FT + G +GAGKT++ I Sbjct: 2 KPLRLTLKNFGSYKGTHTIDFTALGP-IFLICGKTGAGKTTLLDAI 46 >gnl|CDD|180613 PRK06545, PRK06545, prephenate dehydrogenase; Validated. Length = 359 Score = 28.7 bits (65), Expect = 4.1 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 449 LLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVL-HDQVIVEKGV 507 LD AL+ + + I ++ + GR + AI ++V D+ V V Sbjct: 249 DLDRARDALESGDAEAIAELFDAGKAGRDRL-PGKHGGAIPSFYDLYVDVPDEPGVIARV 307 Query: 508 HEEL 511 L Sbjct: 308 TAIL 311 >gnl|CDD|132060 TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. Length = 269 Score = 28.5 bits (64), Expect = 4.5 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 294 SFVYPGKSKRSILKNVNFTVQPGET-IALVGDSGAGKTSIFSLILRFYDP 342 F YP K + + + + + E I + G+ GAGKT++ +L+ D Sbjct: 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 >gnl|CDD|148992 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side. Length = 301 Score = 28.1 bits (63), Expect = 5.3 Identities = 29/163 (17%), Positives = 44/163 (26%), Gaps = 26/163 (15%) Query: 309 VNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAW 368 V ++ PG I L G G+GKTS +L+ I D W Sbjct: 13 VEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHIVYFD-------------PW 59 Query: 369 VPQHPIMIAASVYDNIAIGCP-HATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHL 427 + AS+ +A + + IG G G Sbjct: 60 LFSGQDDAVASLLAALADALEEEYSALATKLLIGKKLLALVIGA---KIGGNFGVGTALA 116 Query: 428 STGQIQRIAIARAI---------LKDSPILLLDEMGSALDIEN 461 TG + + L+ L ++ S LD Sbjct: 117 LTGLVASVEGKSLKLLSIEPLKKLQTEIEELRTDIASTLDDLQ 159 >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional. Length = 216 Score = 28.0 bits (62), Expect = 5.7 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 319 IALVGDSGAGKTSIFSLILR 338 I L+GDSG GK++I S R Sbjct: 15 IVLIGDSGVGKSNILSRFTR 34 >gnl|CDD|128472 smart00175, RAB, Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking. Length = 164 Score = 28.2 bits (64), Expect = 5.7 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%) Query: 319 IALVGDSGAGKTSIFSLILRF 339 I L+GDSG GK+ SL+ RF Sbjct: 3 IILIGDSGVGKS---SLLSRF 20 >gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional. Length = 205 Score = 28.1 bits (64), Expect = 6.5 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 25/81 (30%) Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGSV----------EIEGIDLRLLSLEEIRR---- 364 I L G SGAGK+++ +L SV E++G+D +S EE Sbjct: 8 IVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIEN 67 Query: 365 --FIAWVPQHPIMIAASVYDN 383 F+ W A V+ N Sbjct: 68 GEFLEW---------AEVFGN 79 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 28.1 bits (63), Expect = 6.5 Identities = 7/14 (50%), Positives = 10/14 (71%) Query: 319 IALVGDSGAGKTSI 332 + + GDSG GKT+ Sbjct: 11 LGVAGDSGCGKTTF 24 >gnl|CDD|161885 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. Length = 442 Score = 27.8 bits (62), Expect = 6.9 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%) Query: 316 GETIALVGDSGAGKTSIFSLILR------------FYDPCSGSVEIEGIDLRLLSLEEIR 363 G +A+VG GK+S+ + +L+ D G E+ GI ++LL IR Sbjct: 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIR 262 >gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 118 Score = 27.8 bits (62), Expect = 7.0 Identities = 14/42 (33%), Positives = 25/42 (59%) Query: 319 IALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360 + ++GD G+GK+S+ S ++ P EI+G L + +LE Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLE 43 >gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional. Length = 175 Score = 27.7 bits (62), Expect = 7.7 Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 313 VQPGETIALVGDSGAGKTSI 332 Q G T+ G SGAGKT+I Sbjct: 1 KQRGVTVWFTGLSGAGKTTI 20 >gnl|CDD|162247 TIGR01198, pgl, 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with. Length = 233 Score = 27.7 bits (62), Expect = 7.8 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%) Query: 262 RELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGET-IA 320 R + V P T P + + R V + G+ KR+ L V+ + Sbjct: 155 RLVTVLTKSPKPPHERITLTLPAINAA--RKVFLLIAGEEKRNALAEA-LAVEAEPYPLP 211 Query: 321 LVGDSGAGKTSIF 333 G +GKT Sbjct: 212 AAGVLHSGKTLWL 224 >gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. Length = 161 Score = 27.7 bits (62), Expect = 7.9 Identities = 7/20 (35%), Positives = 13/20 (65%) Query: 319 IALVGDSGAGKTSIFSLILR 338 I +VGD GK+++ + +L Sbjct: 4 IVIVGDPNVGKSTLLNRLLG 23 >gnl|CDD|163200 TIGR03285, methan_mark_14, putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Length = 445 Score = 27.5 bits (61), Expect = 8.6 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Query: 436 AIARAILKDSPILLLDEMGSALDIENEQK----IWKVLRE 471 AI AI++ ++ + MG+ALD+ N+Q K RE Sbjct: 228 AIPDAIIRGCGVID-ERMGAALDLANKQNPPQFNEKKARE 266 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.328 0.141 0.408 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,623,964 Number of extensions: 582562 Number of successful extensions: 2544 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2285 Number of HSP's successfully gapped: 373 Length of query: 528 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 430 Effective length of database: 3,876,889 Effective search space: 1667062270 Effective search space used: 1667062270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 59 (26.7 bits)