HHsearch alignment of GI: 254780194 and MMDB domain: 3f1f_4_

>3f1f_4 (4:) 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=99.93  E-value=1.2e-27  Score=184.71  Aligned_cols=69  Identities=25%  Similarity=0.410  Sum_probs=64.3

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      ||++|||+|+++++.|+||++|++.||.    |++.|||||+||| ||||+|+++|++|||||||+||+.+..+
T Consensus        27 MKk~IHP~y~~~~v~c~cg~~~~~~sT~----~~i~vdVcs~cHP-FyTG~q~~~dt~GRVekF~krf~~~~~~   95 (97)
T 3f1f_4           27 VKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK   95 (97)
T ss_dssp             ---------CCCEEEETTEEEEECCCSS----CCEEESSCTTC-------------------------------
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             5667898878899997899999973525----6589887689877-4818787871567399999987232324