Query gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 74
No_of_seqs 107 out of 844
Neff 5.1
Searched_HMMs 23785
Date Mon May 23 11:59:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780194.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkw_Y 50S ribosomal protein L 99.9 3.4E-28 1.4E-32 187.0 8.2 68 1-73 1-68 (73)
2 3f1f_4 50S ribosomal protein L 99.9 6E-29 2.5E-33 191.5 0.8 69 1-74 27-95 (97)
3 1vs6_Z 50S ribosomal protein L 99.9 2.7E-29 1.2E-33 193.5 -5.0 70 1-74 1-70 (70)
4 2j01_4 50S ribosomal protein L 99.9 8.8E-29 3.7E-33 190.5 -7.0 69 1-74 1-69 (71)
5 3bbo_1 Ribosomal protein L31; 99.9 2.9E-26 1.2E-30 175.6 -9.7 68 1-73 49-118 (144)
6 2ket_A Cathelicidin-6; antimic 21.0 24 0.001 16.4 0.8 13 59-71 1-13 (27)
7 2wcv_A L-fucose mutarotase; FU 18.9 26 0.0011 16.2 0.6 11 1-11 1-11 (140)
8 3mvk_A Protein FUCU, protein R 18.5 22 0.0009 16.7 0.1 11 1-11 1-11 (148)
9 2ob5_A AGR_C_3656P, hypothetic 14.3 40 0.0017 15.1 0.6 11 1-11 5-15 (153)
10 1q68_B Proto-oncogene tyrosine 12.9 35 0.0015 15.5 0.0 10 36-45 10-19 (29)
No 1
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=99.95 E-value=3.4e-28 Score=187.04 Aligned_cols=68 Identities=25% Similarity=0.410 Sum_probs=64.0
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 9887889840799998799979988765476886999854877897116817897213648999977602678
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSI 73 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~ 73 (74)
||+||||+|+++.|.|+||++|.+.||. |++.|||||+||| ||||+|+++|++|||||||+|||++..
T Consensus 1 MKk~IHP~y~~~~v~~~~~~~~~~~st~----~~~~vdv~s~~HP-fyTGkq~~vdt~GRVekF~krf~~~~~ 68 (73)
T 1nkw_Y 1 MQKDLHPKAVPCKIIYQGQVVMETMSTR----PEIHVDVWSGVHP-FWTGEERFLDTEGRVDKFNKRFGDSYR 68 (73)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEECCCC----CCEEEEECCCCCC-CEECCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 9887799988799998998699954116----6278887688877-181878887236509999998740312
No 2
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=99.94 E-value=6e-29 Score=191.47 Aligned_cols=69 Identities=25% Similarity=0.410 Sum_probs=64.8
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE 74 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k 74 (74)
||+||||+|++++|.|+||++|+++||. +++.|||||+||| ||||+|+++|++|||||||+|||....|
T Consensus 27 MKk~IHP~y~~v~v~cscg~~f~~~ST~----~~~~vdIcs~cHP-FyTG~qk~vdt~GRVeKF~krfg~~~kK 95 (97)
T 3f1f_4 27 VKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK 95 (97)
T ss_dssp ---------CCCEEEETTEEEEECCCSS----CCEEESSCTTC-------------------------------
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 5667898878899997899999973525----6589887689877-4818787871567399999987232324
No 3
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S
Probab=99.93 E-value=2.7e-29 Score=193.48 Aligned_cols=70 Identities=36% Similarity=0.529 Sum_probs=66.6
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE 74 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k 74 (74)
||+||||+|++|++.|+||++|.++||++.+ +.|||||+||| ||||+|+++|++|||||||+||+.++.|
T Consensus 1 MKk~IHP~y~~v~~~~s~g~~~~~~sT~~~e---~~vdi~s~~HP-fyTGkq~~~dt~GRVekF~kry~~~~~K 70 (70)
T 1vs6_Z 1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD---LNLDVCSKCHP-FFTGKQRDVATGGRVDRFNKRFNIPGSK 70 (70)
T ss_dssp CCCTTSCCCCCCBCCCCSSCCCCCBCCCCCC---CCCBCCSSSCC-BCCCCCTTTTTHHHHSCSSTTTTTTSCC
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCC---EEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 9798799998799997799999985781773---89987899977-6939787871477699998766553579
No 4
>2j01_4 50S ribosomal protein L31; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.325.1.2 PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 3hux_4 ...
Probab=99.92 E-value=8.8e-29 Score=190.50 Aligned_cols=69 Identities=26% Similarity=0.435 Sum_probs=64.5
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE 74 (74)
Q Consensus 1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k 74 (74)
||+||||+|+++.|.|+||++|+++|| +|++.|||||+||| ||||+|+++|++|||||||+|||....|
T Consensus 1 MKk~IHP~y~~~~v~c~~g~~~~t~st----~~~~~vdv~s~~HP-FyTGkq~~~dt~GRVekF~krfg~~~~k 69 (71)
T 2j01_4 1 MKEGIHPKLVPARIICGCGNVIETYST----KPEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK 69 (71)
T ss_dssp CCGGGCCCCTTTTTCTTSCGGGSCSSS----SCCSSCCSCCCCCS-SSCCCSCC--------------------
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEC----CCCEEEEECCCCCC-CCCCCEEEEECCCHHHHHHHHHCCCCCC
T ss_conf 989879997879999899999995441----21289888799877-4828788881445299999886332425
No 5
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana}
Probab=99.88 E-value=2.9e-26 Score=175.57 Aligned_cols=68 Identities=32% Similarity=0.358 Sum_probs=59.2
Q ss_pred CCCCCCCCCEE-EEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEE-ECCCHHHHHHHHHHCCCC
Q ss_conf 98878898407-99998799979988765476886999854877897116817897-213648999977602678
Q gi|254780194|r 1 MKKNIHPETHL-ITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKIT-DRGGQVSRFKKRFAGLSI 73 (74)
Q Consensus 1 MKk~IHP~y~~-v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~-dt~GrveKF~kkfg~~~~ 73 (74)
||+||||+|++ +.|.|+||++|.++||. +++.|||||+||| ||||+|+++ +++||||||++|||+++.
T Consensus 49 ~KKdIHP~y~~~~~V~c~~g~~f~t~STk----~e~~vDIcS~cHP-FYTG~q~~v~~~aGRVeKF~kRfg~l~~ 118 (144)
T 3bbo_1 49 RKKELHPEFHEDAKVYCNGELVMTTGGTK----KEYVVDVWSGNHP-FYLGNRSALMVDADQVEKFRKRFAGLSE 118 (144)
T ss_dssp -CTTTCCCCCHHHHHCSSSCTTTSCSSCS----CSSSCCSSCCCCC-SSSSSSSCCCCCCCCCCCSSCCCCCCSS
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEECC----CCEEEEECCCCCC-EEECCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf 35888989826769990899889970558----7478887588874-2867813786355049999987616230
No 6
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=20.99 E-value=24 Score=16.44 Aligned_cols=13 Identities=46% Similarity=0.976 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHCC
Q ss_conf 6489999776026
Q gi|254780194|r 59 GQVSRFKKRFAGL 71 (74)
Q Consensus 59 GrveKF~kkfg~~ 71 (74)
||..+|++||..+
T Consensus 1 grfkrfrkkfkkl 13 (27)
T 2ket_A 1 GRFKRFRKKFKKL 13 (27)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9378999999999
No 7
>2wcv_A L-fucose mutarotase; FUCU, ribose, pyranase, cytoplasm, isomerase, fucose metabolism, carbohydrate metabolism; HET: FUC; 1.90A {Escherichia coli}
Probab=18.88 E-value=26 Score=16.21 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=8.8
Q ss_pred CCCCCCCCCEE
Q ss_conf 98878898407
Q gi|254780194|r 1 MKKNIHPETHL 11 (74)
Q Consensus 1 MKk~IHP~y~~ 11 (74)
|+|||||-.++
T Consensus 1 MlK~i~~iLn~ 11 (140)
T 2wcv_A 1 MLKTISPLISP 11 (140)
T ss_dssp CCTTSCTTSCH
T ss_pred CCCCCCCCCCH
T ss_conf 98887877599
No 8
>3mvk_A Protein FUCU, protein RBSD; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; HET: PGE; 1.65A {Bifidobacterium longum subsp}
Probab=18.49 E-value=22 Score=16.72 Aligned_cols=11 Identities=27% Similarity=0.045 Sum_probs=8.8
Q ss_pred CCCCCCCCCEE
Q ss_conf 98878898407
Q gi|254780194|r 1 MKKNIHPETHL 11 (74)
Q Consensus 1 MKk~IHP~y~~ 11 (74)
|+|||||-.++
T Consensus 1 Mlk~i~~iLnp 11 (148)
T 3mvk_A 1 MLKGIPKIIPP 11 (148)
T ss_dssp ----CCTTSCH
T ss_pred CCCCCCCCCCH
T ss_conf 98887877499
No 9
>2ob5_A AGR_C_3656P, hypothetical protein ATU2016; putavite sugar binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.60A {Agrobacterium tumefaciens str} SCOP: c.133.1.1
Probab=14.34 E-value=40 Score=15.14 Aligned_cols=11 Identities=45% Similarity=0.604 Sum_probs=8.8
Q ss_pred CCCCCCCCCEE
Q ss_conf 98878898407
Q gi|254780194|r 1 MKKNIHPETHL 11 (74)
Q Consensus 1 MKk~IHP~y~~ 11 (74)
|.|||+|-.++
T Consensus 5 MLk~i~~iLnp 15 (153)
T 2ob5_A 5 MLKNIDPALNA 15 (153)
T ss_dssp CCTTSCTTSCH
T ss_pred HHCCCCCCCCH
T ss_conf 75489856599
No 10
>1q68_B Proto-oncogene tyrosine-protein kinase LCK; peptide-peptide complex, helix-helix interaction, zinc coordination, beta hairpin; NMR {Homo sapiens} SCOP: j.108.1.1 PDB: 1q69_B
Probab=12.85 E-value=35 Score=15.46 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=8.3
Q ss_pred EEEECCCCCC
Q ss_conf 9985487789
Q gi|254780194|r 36 KLDIDPLSHF 45 (74)
Q Consensus 36 ~vdi~s~~HP 45 (74)
.+|||-+||-
T Consensus 10 nidvcenchy 19 (29)
T 1q68_B 10 NIDVCENCHY 19 (29)
T ss_dssp TCCCCSSSCS
T ss_pred HHHHHHCCCC
T ss_conf 4366632787
Done!