RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31
[Candidatus Liberibacter asiaticus str. psy62]
         (74 letters)



>gnl|CDD|144697 pfam01197, Ribosomal_L31, Ribosomal protein L31. 
          Length = 69

 Score = 79.1 bits (196), Expect = 3e-16
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 1  MKKNIHPETHLITVVMT-DGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGG 59
          MKK IHPE   +    +  G  + TRST +    V+K+D+    H  + G +QK+ D  G
Sbjct: 1  MKKGIHPEYREVVFTCSSCGNVFVTRSTKEYP--VIKIDVCSACHPFYTG-KQKLVDTAG 57

Query: 60 QVSRFKKRFAG 70
          +V +F KRF  
Sbjct: 58 RVEKFNKRFGK 68


>gnl|CDD|30603 COG0254, RpmE, Ribosomal protein L31 [Translation, ribosomal
          structure and biogenesis].
          Length = 75

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 1  MKKNIHPETHLITVVMTD--GTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRG 58
          MKK+IHPE +   V +    G ++ TRST   +   + LD+    H  + G +QKI D  
Sbjct: 1  MKKDIHPEYYRPVVFVCSSCGNEFTTRSTKGTD--EINLDVCSKCHPFYTG-KQKIVDTE 57

Query: 59 GQVSRFKKRFAGLS 72
          G+V +F KRF G  
Sbjct: 58 GRVEKFNKRFGGFK 71


>gnl|CDD|177058 CHL00136, rpl31, ribosomal protein L31; Validated.
          Length = 68

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
           KKNIHP+    T V  DG    T  + K E   + +DI   +H  +  G QKI D  G+
Sbjct: 2  PKKNIHPQWFPETKVYCDGQLVMTVGSTKPE---LNVDIWSGNHPFYT-GSQKIIDTEGR 57

Query: 61 VSRFKKRFAG 70
          V RF K++  
Sbjct: 58 VERFMKKYGL 67


>gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP)
           reversibly catalyzes trehalose synthesis and degradation
           from alpha-glucose-1-phosphate (alpha-Glc-1-P) and
           glucose. The catalyzing activity includes the
           phosphorolysis of trehalose, which produce alpha-Glc-1-P
           and glucose, and the subsequent synthesis of trehalose.
           This family is most closely related to the GT1 family of
           glycosyltransferases..
          Length = 372

 Score = 24.9 bits (55), Expect = 5.0
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 12/52 (23%)

Query: 25  RSTWKEEGAVMKLDIDPLSHF---------AWIGGRQKI-TDRG--GQVSRF 64
                    ++   IDPLS            +I  +  I  +R    QVSRF
Sbjct: 148 PPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRF 199


>gnl|CDD|38908 KOG3704, KOG3704, KOG3704, Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase [Posttranslational modification,
           protein turnover, chaperones].
          Length = 360

 Score = 24.6 bits (53), Expect = 5.5
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 41  PLSHFAWIGGRQKITDRGGQVSRFKKRFAGLS 72
           PL    ++ G + I+D  G++ R  + F GL 
Sbjct: 258 PLRQILFVSGERLISDPAGELGRV-QDFLGLK 288


>gnl|CDD|34245 COG4625, COG4625, Uncharacterized protein with a C-terminal OMP
           (outer membrane protein) domain [Function unknown].
          Length = 577

 Score = 24.6 bits (53), Expect = 6.5
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 18  DGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSR 63
            G Q +    W+        D+ P S FA   G       G  +SR
Sbjct: 491 VGLQLRGYLGWRHN---FDQDLTPESSFAAASGWTAFVVVGVPISR 533


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0823    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 905,457
Number of extensions: 35968
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 7
Length of query: 74
Length of database: 6,263,737
Length adjustment: 45
Effective length of query: 29
Effective length of database: 5,291,332
Effective search space: 153448628
Effective search space used: 153448628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)