RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31 [Candidatus Liberibacter asiaticus str. psy62] (74 letters) >gnl|CDD|179057 PRK00528, rpmE, 50S ribosomal protein L31; Reviewed. Length = 71 Score = 114 bits (288), Expect = 5e-27 Identities = 42/71 (59%), Positives = 55/71 (77%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 MKK+IHP+ H I VVMTDGT+Y+TRSTW + G ++LDID +H AW GG QK+ D GG+ Sbjct: 1 MKKDIHPDYHPIKVVMTDGTEYETRSTWGKTGPELRLDIDSGNHPAWTGGTQKLLDTGGR 60 Query: 61 VSRFKKRFAGL 71 V++F K+F GL Sbjct: 61 VAKFNKKFGGL 71 >gnl|CDD|129211 TIGR00105, L31, ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. Length = 68 Score = 101 bits (254), Expect = 4e-23 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 MKK+IHP+ H ITV T G + TRSTW +E + LDI H + G+QKI D GG+ Sbjct: 1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKE--TLNLDICSKCHPFYT-GKQKIVDTGGR 57 Query: 61 VSRFKKRFAGL 71 V +F K+F GL Sbjct: 58 VDKFNKKFGGL 68 >gnl|CDD|178797 PRK00019, rpmE, 50S ribosomal protein L31; Reviewed. Length = 72 Score = 59.6 bits (145), Expect = 2e-10 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 MKK+IHP+ +TV + G ++TRST ++ + +D+ H + G+QKI D GG+ Sbjct: 1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKD--EINVDVCSKCHPFYT-GKQKIVDTGGR 57 Query: 61 VSRFKKRFA 69 V RF KRF Sbjct: 58 VERFNKRFG 66 >gnl|CDD|179318 PRK01678, rpmE2, 50S ribosomal protein L31 type B; Reviewed. Length = 87 Score = 55.3 bits (134), Expect = 4e-09 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 16/83 (19%) Query: 1 MKKNIHPETHLITVV---MTDGTQYQTRSTWK-------EEG---AVMKLDIDPLSHFAW 47 MKK IHPE VV + G ++ T ST E+G ++K++I SH + Sbjct: 1 MKKGIHPEYR--PVVFHDTSTGFKFLTGSTITTDETIEWEDGKTYPLVKVEISSASHPFY 58 Query: 48 IGGRQKITDRGGQVSRFKKRFAG 70 G +QK D G+V +F KRF Sbjct: 59 TG-KQKFVDTEGRVEKFNKRFGR 80 >gnl|CDD|179294 PRK01397, PRK01397, 50S ribosomal protein L31; Provisional. Length = 78 Score = 40.3 bits (94), Expect = 1e-04 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 MK IHPE ++ ++T ST +M D+D H AW + ++ + Sbjct: 1 MKSGIHPEYKKF-LIKVGSDVFETMSTHPTGEILM--DVDFRKHPAWNKDSGNVVNQSNK 57 Query: 61 -VSRFKKRFAGLS 72 VS F KRF+GLS Sbjct: 58 SVSDFNKRFSGLS 70 >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase. Length = 651 Score = 25.1 bits (55), Expect = 4.6 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Query: 23 QTRSTWKEEGAVMKLDIDPLSHFAWI-GGRQKITDR 57 QTR E+G + DI W+ GGR KI DR Sbjct: 478 QTREVIDEDGWLHTGDIG-----LWLPGGRLKIIDR 508 >gnl|CDD|182651 PRK10692, PRK10692, hypothetical protein; Provisional. Length = 92 Score = 24.6 bits (54), Expect = 6.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 46 AWIGGRQKITDRGGQVSRFKKR 67 A +GGR+++ DR V + KR Sbjct: 61 ARVGGREQVADRYWWVRHYDKR 82 >gnl|CDD|181622 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional. Length = 443 Score = 24.1 bits (53), Expect = 9.6 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 11/29 (37%) Query: 40 DPLSHF-----------AWIGGRQKITDR 57 DP+S W+ G+Q + DR Sbjct: 389 DPVSQLVYAAGREQVSHVWVAGKQLLDDR 417 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.134 0.407 Gapped Lambda K H 0.267 0.0720 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,226,411 Number of extensions: 59783 Number of successful extensions: 97 Number of sequences better than 10.0: 1 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 17 Length of query: 74 Length of database: 5,994,473 Length adjustment: 44 Effective length of query: 30 Effective length of database: 5,043,721 Effective search space: 151311630 Effective search space used: 151311630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.1 bits)