RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31
[Candidatus Liberibacter asiaticus str. psy62]
         (74 letters)



>gnl|CDD|179057 PRK00528, rpmE, 50S ribosomal protein L31; Reviewed.
          Length = 71

 Score =  114 bits (288), Expect = 5e-27
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+ H I VVMTDGT+Y+TRSTW + G  ++LDID  +H AW GG QK+ D GG+
Sbjct: 1  MKKDIHPDYHPIKVVMTDGTEYETRSTWGKTGPELRLDIDSGNHPAWTGGTQKLLDTGGR 60

Query: 61 VSRFKKRFAGL 71
          V++F K+F GL
Sbjct: 61 VAKFNKKFGGL 71


>gnl|CDD|129211 TIGR00105, L31, ribosomal protein L31.  This family consists
          exclusively of bacterial (and organellar) 50S ribosomal
          protein L31. In some species, such as Bacillus
          subtilis, this protein exists in two forms (RpmE and
          YtiA), one of which (RpmE) contains a pair of motifs,
          CXC and CXXC, for binding zinc.
          Length = 68

 Score =  101 bits (254), Expect = 4e-23
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+ H ITV  T G  + TRSTW +E   + LDI    H  +  G+QKI D GG+
Sbjct: 1  MKKDIHPDYHEITVTCTCGNVFTTRSTWGKE--TLNLDICSKCHPFYT-GKQKIVDTGGR 57

Query: 61 VSRFKKRFAGL 71
          V +F K+F GL
Sbjct: 58 VDKFNKKFGGL 68


>gnl|CDD|178797 PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.
          Length = 72

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+   +TV  + G  ++TRST  ++   + +D+    H  +  G+QKI D GG+
Sbjct: 1  MKKDIHPKYEEVTVTCSCGNVFETRSTLGKD--EINVDVCSKCHPFYT-GKQKIVDTGGR 57

Query: 61 VSRFKKRFA 69
          V RF KRF 
Sbjct: 58 VERFNKRFG 66


>gnl|CDD|179318 PRK01678, rpmE2, 50S ribosomal protein L31 type B; Reviewed.
          Length = 87

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 16/83 (19%)

Query: 1  MKKNIHPETHLITVV---MTDGTQYQTRSTWK-------EEG---AVMKLDIDPLSHFAW 47
          MKK IHPE     VV    + G ++ T ST         E+G    ++K++I   SH  +
Sbjct: 1  MKKGIHPEYR--PVVFHDTSTGFKFLTGSTITTDETIEWEDGKTYPLVKVEISSASHPFY 58

Query: 48 IGGRQKITDRGGQVSRFKKRFAG 70
           G +QK  D  G+V +F KRF  
Sbjct: 59 TG-KQKFVDTEGRVEKFNKRFGR 80


>gnl|CDD|179294 PRK01397, PRK01397, 50S ribosomal protein L31; Provisional.
          Length = 78

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK  IHPE     ++      ++T ST      +M  D+D   H AW      + ++  +
Sbjct: 1  MKSGIHPEYKKF-LIKVGSDVFETMSTHPTGEILM--DVDFRKHPAWNKDSGNVVNQSNK 57

Query: 61 -VSRFKKRFAGLS 72
           VS F KRF+GLS
Sbjct: 58 SVSDFNKRFSGLS 70


>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
          Length = 651

 Score = 25.1 bits (55), Expect = 4.6
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 23  QTRSTWKEEGAVMKLDIDPLSHFAWI-GGRQKITDR 57
           QTR    E+G +   DI       W+ GGR KI DR
Sbjct: 478 QTREVIDEDGWLHTGDIG-----LWLPGGRLKIIDR 508


>gnl|CDD|182651 PRK10692, PRK10692, hypothetical protein; Provisional.
          Length = 92

 Score = 24.6 bits (54), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 46 AWIGGRQKITDRGGQVSRFKKR 67
          A +GGR+++ DR   V  + KR
Sbjct: 61 ARVGGREQVADRYWWVRHYDKR 82


>gnl|CDD|181622 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional.
          Length = 443

 Score = 24.1 bits (53), Expect = 9.6
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 11/29 (37%)

Query: 40  DPLSHF-----------AWIGGRQKITDR 57
           DP+S              W+ G+Q + DR
Sbjct: 389 DPVSQLVYAAGREQVSHVWVAGKQLLDDR 417


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,226,411
Number of extensions: 59783
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 17
Length of query: 74
Length of database: 5,994,473
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,043,721
Effective search space: 151311630
Effective search space used: 151311630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)