RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780194|ref|YP_003064607.1| 50S ribosomal protein L31 [Candidatus Liberibacter asiaticus str. psy62] (74 letters) >2j01_4 50S ribosomal protein L31; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (4:) Length = 71 Score = 88.6 bits (220), Expect = 2e-19 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 MK+ IHP+ ++ G +T ST E + +++ H + G+Q+ D G+ Sbjct: 1 MKEGIHPKLVPARIICGCGNVIETYSTKPE----IYVEVCSKCHPFYT-GQQRFVDTEGR 55 Query: 61 VSRFKKRFAGLS 72 V RF++R+ Sbjct: 56 VERFQRRYGDSY 67 >3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4 (4:) Length = 97 Score = 82.2 bits (203), Expect = 2e-17 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 +K+ IHP+ ++ G +T ST E + +++ H + G+Q+ D G+ Sbjct: 27 VKEGIHPKLVPARIICGCGNVIETYSTKPE----IYVEVCSKCHPFYT-GQQRFVDTEGR 81 Query: 61 VSRFKKRFAGLS 72 V RF++R+ Sbjct: 82 VERFQRRYGDSY 93 >3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (1:) Length = 144 Score = 79.3 bits (195), Expect = 2e-16 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 1 MKKNIHPETH-LITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGG 59 KK +HPE H V T T KE +D+ +H ++G R + Sbjct: 49 RKKELHPEFHEDAKVYCNGELVMTTGGTKKE----YVVDVWSGNHPFYLGNRSALMVDAD 104 Query: 60 QVSRFKKRFAGLS 72 QV +F+KRFAGLS Sbjct: 105 QVEKFRKRFAGLS 117 >1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (Y:1-56) Length = 56 Score = 71.6 bits (176), Expect = 4e-14 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60 M+K++HP+ ++ +T ST E + +D+ H W G ++ D G+ Sbjct: 1 MQKDLHPKAVPCKIIYQGQVVMETMSTRPE----IHVDVWSGVHPFWT-GEERFLDTEGR 55 Query: 61 V 61 V Sbjct: 56 V 56 >1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} (Z:1-28) Length = 28 Score = 50.4 bits (121), Expect = 9e-08 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 1 MKKNIHPETHLITVVMTDGTQYQTRST 27 MKK+IHP+ IT + G + RST Sbjct: 1 MKKDIHPKYEEITASCSCGNVMKIRST 27 >1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} (Z:29-70) Length = 42 Score = 48.8 bits (117), Expect = 2e-07 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 32 GAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLS 72 G + LD+ H + G Q+ GG+V RF KRF Sbjct: 1 GHDLNLDVCSKCHPFFTGK-QRDVATGGRVDRFNKRFNIPG 40 >1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} (A:31-190) Length = 160 Score = 24.4 bits (53), Expect = 5.0 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%) Query: 13 TVVMTDGT---QYQTRSTWKEEGAVMK 36 +++TDG+ + R EG ++K Sbjct: 131 YLMITDGSASGISKCRFLKIREGRIIK 157 >1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A* (A:30-188) Length = 159 Score = 24.4 bits (53), Expect = 5.4 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%) Query: 13 TVVMTDGT---QYQTRSTWKEEGAVMK 36 VVMTDG + T+ + +EG + K Sbjct: 129 PVVMTDGPANNRAATKIIYFKEGKIQK 155 >1nmb_N N9 neuraminidase; complex (hydrolase/immunoglobulin); HET: NAG BMA MAN; 2.20A {Influenza a virus} (N:112-274) Length = 163 Score = 24.4 bits (53), Expect = 5.5 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 5/34 (14%) Query: 13 TVVMTDGT---QYQTRSTWKEEGAVMKLDIDPLS 43 VV TDG+ +TR + +EG ++K +PL+ Sbjct: 129 PVVFTDGSATGPAETRIYYFKEGKILK--WEPLT 160 >1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:97-264) Length = 168 Score = 24.4 bits (53), Expect = 6.4 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Query: 13 TVVMTDGT---QYQTRSTWKEEGAVMK 36 TVVMTDG+ + TR + EEG ++ Sbjct: 61 TVVMTDGSASGRADTRILFIEEGKIVH 87 >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} (D:1-99) Length = 99 Score = 24.0 bits (52), Expect = 6.6 Identities = 7/27 (25%), Positives = 12/27 (44%) Query: 6 HPETHLITVVMTDGTQYQTRSTWKEEG 32 +P+ VV+T T + TW + Sbjct: 16 YPDAPGEMVVLTCDTPEEDGITWTLDQ 42 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.134 0.407 Gapped Lambda K H 0.267 0.0668 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 577,270 Number of extensions: 20593 Number of successful extensions: 43 Number of sequences better than 10.0: 1 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 14 Length of query: 74 Length of database: 4,956,049 Length adjustment: 40 Effective length of query: 34 Effective length of database: 3,603,849 Effective search space: 122530866 Effective search space used: 122530866 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.2 bits)