HHsearch alignment for GI: 254780195 and conserved domain: CHL00197
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional.
Probab=99.49 E-value=4.7e-12 Score=107.54 Aligned_cols=261 Identities=19% Similarity=0.270 Sum_probs=157.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf 89999999974998768999238758999999998641988677240389862026689887649488999983878888
Q gi|254780195|r 192 TQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVS 271 (544)
Q Consensus 192 TQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~ 271 (544)
T Consensus 118 TRaLTk~IR~~G~m~g~I-~-~~~~~~~~l~~~~~~~~~~~~~dLv~~VSt~~~y~~----------------------~ 173 (383)
T CHL00197 118 TRALVRHLRRFGTMNGCI-S-NQNLNLSYLEAKIKELPSMEGLDLAPSVTTSSYYEW----------------------D 173 (383)
T ss_pred HHHHHHHHHHCCCCEEEE-E-CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE----------------------C
T ss_conf 899999999649824999-0-798998999999874899657854248516887770----------------------6
Q ss_pred CCCHHHHHHHHHHHC-CCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH-CCCCE
Q ss_conf 620478999998741-8434379999520014813468888888888787367241677225656723445662-16983
Q gi|254780195|r 272 LPQIDNWQTFCDRTL-SLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHF-YGVHG 349 (544)
Q Consensus 272 ~~~l~~W~~~~~~~~-~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L-~~~dG 349 (544)
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~VvviD~-----GiK~nILr~L~~----~g--~~v~VvP~~~----~~~~I~~~~PDG 238 (383)
T CHL00197 174 EPSHPKWFYLADNKRPHSSYPLRIIVIDF-----GVKYNILRRLKS----FG--CEITIVPATS----TYQDIMAYQPDG 238 (383)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEC-----CCCHHHHHHHHH----CC--CEEEEECCCC----CCCHHHCCCCCE
T ss_conf 88765432134344458888745999967-----771889999997----89--9899989998----511342568888
Q ss_pred EEECCCCCCC-CCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCC
Q ss_conf 9973777865-50168889988740-476322355769999999987516889997000356666412115011234653
Q gi|254780195|r 350 ILVPGGFGKR-GSEGKIAAIKFARE-NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQ 427 (544)
Q Consensus 350 IlVPGGFG~R-GieGkI~Ai~yARe-n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~ 427 (544)
T Consensus 239 IfLSNGPGDP~~~~~~i~~i~~li~~~~iPifGICLGHQlLalA-----~Gak----T----------~Kmkf------- 292 (383)
T CHL00197 239 ILLSNGPGDPSTVHYGIKTVKKLIKKANIPIFGICMGHQILSLA-----LEAK----T----------FKLKF------- 292 (383)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH-----CCCE----E----------EECCC-------
T ss_conf 99789999978989999999999964899789955889999997-----3983----7----------56688-------
Q ss_pred CCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCC
Q ss_conf 00156554674023165257855870668863798476602523332788998999789599998699986899983899
Q gi|254780195|r 428 EKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINH 507 (544)
Q Consensus 428 ~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~H 507 (544)
T Consensus 293 ------GH-----rG~NhPV~~---------t~kv~IT-SQNHGyaVd~~---sl~~~~~~vt~~nlnD~tvEG~~~~~~ 348 (383)
T CHL00197 293 ------GH-----RGLNHPSGL---------NQQVEIT-SQNHGFAVNAE---SLAKNKVYVTHFNLNDGTVAGISHSPK 348 (383)
T ss_pred ------CC-----CCCCCCCCC---------CCCEEEE-ECCCCEEECCC---CCCCCCCEEEEECCCCCCCCCEEECCC
T ss_conf ------87-----798866015---------8757996-27876176744---478873189999388896148698899
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 84999724877327876988415899999998764
Q gi|254780195|r 508 PWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQ 542 (544)
Q Consensus 508 pffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~ 542 (544)
T Consensus 349 p~-fsvQfHPEa~pGP~Ds~~lF~~F~~~~~~~k~ 382 (383)
T CHL00197 349 PY-FSVQYHPEASPGPHDADYLFEYFIEIMKHSKS 382 (383)
T ss_pred CE-EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 87-88774889898987308899999999997618