HHsearch alignment for GI: 254780195 and conserved domain: CHL00197

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional.
Probab=99.49  E-value=4.7e-12  Score=107.54  Aligned_cols=261  Identities=19%  Similarity=0.270  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf             89999999974998768999238758999999998641988677240389862026689887649488999983878888
Q gi|254780195|r  192 TQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVS  271 (544)
Q Consensus       192 TQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~  271 (544)
T Consensus       118 TRaLTk~IR~~G~m~g~I-~-~~~~~~~~l~~~~~~~~~~~~~dLv~~VSt~~~y~~----------------------~  173 (383)
T CHL00197        118 TRALVRHLRRFGTMNGCI-S-NQNLNLSYLEAKIKELPSMEGLDLAPSVTTSSYYEW----------------------D  173 (383)
T ss_pred             HHHHHHHHHHCCCCEEEE-E-CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE----------------------C
T ss_conf             899999999649824999-0-798998999999874899657854248516887770----------------------6


Q ss_pred             CCCHHHHHHHHHHHC-CCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH-CCCCE
Q ss_conf             620478999998741-8434379999520014813468888888888787367241677225656723445662-16983
Q gi|254780195|r  272 LPQIDNWQTFCDRTL-SLKNEVKVAIVGKYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHF-YGVHG  349 (544)
Q Consensus       272 ~~~l~~W~~~~~~~~-~~~~~V~IaiVGKY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L-~~~dG  349 (544)
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~VvviD~-----GiK~nILr~L~~----~g--~~v~VvP~~~----~~~~I~~~~PDG  238 (383)
T CHL00197        174 EPSHPKWFYLADNKRPHSSYPLRIIVIDF-----GVKYNILRRLKS----FG--CEITIVPATS----TYQDIMAYQPDG  238 (383)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEC-----CCCHHHHHHHHH----CC--CEEEEECCCC----CCCHHHCCCCCE
T ss_conf             88765432134344458888745999967-----771889999997----89--9899989998----511342568888


Q ss_pred             EEECCCCCCC-CCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEECCCHHCCCCCC
Q ss_conf             9973777865-50168889988740-476322355769999999987516889997000356666412115011234653
Q gi|254780195|r  350 ILVPGGFGKR-GSEGKIAAIKFARE-NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEAGVPVIALMSEWMKGDQQ  427 (544)
Q Consensus       350 IlVPGGFG~R-GieGkI~Ai~yARe-n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~~~pvI~~l~e~~~~~~~  427 (544)
T Consensus       239 IfLSNGPGDP~~~~~~i~~i~~li~~~~iPifGICLGHQlLalA-----~Gak----T----------~Kmkf-------  292 (383)
T CHL00197        239 ILLSNGPGDPSTVHYGIKTVKKLIKKANIPIFGICMGHQILSLA-----LEAK----T----------FKLKF-------  292 (383)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH-----CCCE----E----------EECCC-------
T ss_conf             99789999978989999999999964899789955889999997-----3983----7----------56688-------


Q ss_pred             CCCCCCCCCCCEEEECCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEECCC
Q ss_conf             00156554674023165257855870668863798476602523332788998999789599998699986899983899
Q gi|254780195|r  428 EKRLPSDDLGATMRLGAYDVSLKEETLISRIYGLDLIPERHRHRYEVNVRYREKLEGCGLKFSGFSVDHALPEVVEYINH  507 (544)
Q Consensus       428 ~~~~~~~~~GGTMRLG~~~~~l~~~S~~~~iYg~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sg~~~d~~lvEiiEl~~H  507 (544)
T Consensus       293 ------GH-----rG~NhPV~~---------t~kv~IT-SQNHGyaVd~~---sl~~~~~~vt~~nlnD~tvEG~~~~~~  348 (383)
T CHL00197        293 ------GH-----RGLNHPSGL---------NQQVEIT-SQNHGFAVNAE---SLAKNKVYVTHFNLNDGTVAGISHSPK  348 (383)
T ss_pred             ------CC-----CCCCCCCCC---------CCCEEEE-ECCCCEEECCC---CCCCCCCEEEEECCCCCCCCCEEECCC
T ss_conf             ------87-----798866015---------8757996-27876176744---478873189999388896148698899


Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             84999724877327876988415899999998764
Q gi|254780195|r  508 PWFIGVQYHPELKSRPLDPHPLFVSFIQATVLYSQ  542 (544)
Q Consensus       508 pffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~~~  542 (544)
T Consensus       349 p~-fsvQfHPEa~pGP~Ds~~lF~~F~~~~~~~k~  382 (383)
T CHL00197        349 PY-FSVQYHPEASPGPHDADYLFEYFIEIMKHSKS  382 (383)
T ss_pred             CE-EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             87-88774889898987308899999999997618