HHsearch alignment for GI: 254780195 and conserved domain: COG1492
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism].
Probab=95.18 E-value=0.013 Score=39.34 Aligned_cols=281 Identities=22% Similarity=0.309 Sum_probs=139.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 39999375014444489999999999968982889854455334888888644350787279840025564113322874
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
T Consensus 2 ~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI-------------- 54 (486)
T COG1492 2 KAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI-------------- 54 (486)
T ss_pred CCCEE-EECCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--------HHCCC----CCEECCCCCEE--------------
T ss_conf 85378-72147765467524534888735775478706--------54346----60787799687--------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCC---------CCEEECCC-------------------HHHHHHHHHHCCCCCCC
Q ss_conf 775468012589999998885777577---------40256460-------------------24898999970788987
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLG---------TTVQVIPH-------------------VTNEIKEFITQGNEDAD 134 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG---------~TVQvIPH-------------------vTdeIk~~I~~~~~~~D 134 (544)
T Consensus 55 -------graQ~~QA~Aa~i~p~v~mNPvLLKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d 127 (486)
T COG1492 55 -------GRAQALQALAAGIEPSVHMNPVLLKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYD 127 (486)
T ss_pred -------EHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -------5506678987399874342877870358884479994634466571788999889999999999987541055
Q ss_pred EEEEECCCCCC-------CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEE----EECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89997243122-------2123068999999998749776857999974675----422566200347899999999749
Q gi|254780195|r 135 FVICEIGGTIG-------DIEVMPFVEAIRQFGNEFSHRGSKALYIHLTLMP----YIRSSGELKTKPTQHSVKELQALG 203 (544)
Q Consensus 135 v~ivEiGGTVG-------DIEs~pFlEAiRQl~~e~g~~~~n~~fiHvtlvP----~l~~~gE~KTKPTQhSVk~Lrs~G 203 (544)
T Consensus 128 ~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d------------apvILV~DIdRGGvfAsl~GT~~lL~--~~~r~~-VkG 192 (486)
T COG1492 128 VVVIEGAGSPAEINLRDRDIANMGVAEIAD------------APVILVGDIDRGGVFASLYGTLALLP--ESDRAL-VKG 192 (486)
T ss_pred EEEEECCCCHHHCCCCCCCCCCEEEEHHCC------------CCEEEEEEECCCCEEEEEEEHHEECC--HHHHCC-EEE
T ss_conf 899963798232276636611002202338------------98899995115645417302122368--767600-147
Q ss_pred CCCCEEE--EECCCCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 9876899--92387589999999986419886772403898620266898876494889999838788886204789999
Q gi|254780195|r 204 VHPDILL--IRADRDIPEMERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTF 281 (544)
Q Consensus 204 IqPDiiv--cRse~~l~~~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~ 281 (544)
T Consensus 193 ----~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~-------------------------~~~------~~~p~EDS 237 (486)
T COG1492 193 ----FIINKFRGDESLLDPGLKWLEELTGVPVLGVLPY-------------------------LKD------ALRPAEDS 237 (486)
T ss_pred ----EEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCC-------------------------CCC------CCCCCCCC
T ss_conf ----9996317987887459999998619746756525-------------------------554------55764202
Q ss_pred HH----HHCCCCCCEEEEEEH-HHC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC
Q ss_conf 98----741843437999952-001-481346888888888878736724167722565672344566216983997377
Q gi|254780195|r 282 CD----RTLSLKNEVKVAIVG-KYI-HLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGG 355 (544)
Q Consensus 282 ~~----~~~~~~~~V~IaiVG-KY~-~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGG 355 (544)
T Consensus 238 ~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~dp----------L~~~~~v~v~~v~~~--------~~l~~~dlvIlPGs 299 (486)
T COG1492 238 LSLEQPKAGGNKRAIRIAVIRLPRISNFTDFDP----------LRAEPDVRVRFVKPG--------SDLRDADLVILPGS 299 (486)
T ss_pred CCCHHHCCCCCCCCEEEEEECCCCCCCCCCCHH----------HHCCCCEEEEEECCC--------CCCCCCCEEEECCC
T ss_conf 270001025897754999965787556445214----------652798079996167--------77899888994798
Q ss_pred CC---------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 78---------6550168889988740476322355769999
Q gi|254780195|r 356 FG---------KRGSEGKIAAIKFARENKIPFLGICFGMQMA 388 (544)
Q Consensus 356 FG---------~RGieGkI~Ai~yARen~iP~LGIClGmQ~a 388 (544)
T Consensus 300 k~t~~DL~~lr~~g~d~--~i~~~~~~-~~~viGICGG~QmL 338 (486)
T COG1492 300 KNTIADLKILREGGMDE--KILEYARK-GGDVIGICGGYQML 338 (486)
T ss_pred CCCHHHHHHHHHCCHHH--HHHHHHHC-CCCEEEECCHHHHH
T ss_conf 56088999999769799--99999747-99799986357764