HHsearch alignment for GI: 254780195 and conserved domain: TIGR00313
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=95.59 E-value=0.011 Score=39.98 Aligned_cols=293 Identities=22% Similarity=0.354 Sum_probs=167.5
Q ss_pred ECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC---------CCCHHHH
Q ss_conf 3750144444899999999999689828898544553348888886443507872798400255---------6411332
Q gi|254780195|r 8 TGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLD---------FGHYERF 78 (544)
Q Consensus 8 tGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlD---------lG~YERF 78 (544)
T Consensus 3 V~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKs--------QNMSLN----Sfvt~~~~EiA~AQ~~QA~AAGieP~~~m 70 (502)
T TIGR00313 3 VVGTSSSAGKSLLTAALCRILARRGYRVAPFKS--------QNMSLN----SFVTAEGGEIAIAQALQALAAGIEPSVHM 70 (502)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHH----HHHCCCCCEEEHHHHHHHHHCCCCCCCCC
T ss_conf 420115402899999999998527881278501--------101013----33113787551376899986387886234
Q ss_pred CCCCCCCCCCCCH-----HHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC----C
Q ss_conf 2874775468012-----589999998885777577402564602489899997078898789997243122212----3
Q gi|254780195|r 79 MGISTAKADNITA-----GRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIE----V 149 (544)
Q Consensus 79 l~~~l~~~~niT~-----Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIE----s 149 (544)
T Consensus 71 NPvLLKPkgdf~SQviv~G~a~g~~~~~~Y~~~~~d~-------~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rD 143 (502)
T TIGR00313 71 NPVLLKPKGDFTSQVIVHGRAVGDMNAQEYYKNKVDF-------LLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERD 143 (502)
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 8710167888466789841124667615677799999-------999999999875202888998268871000533157
Q ss_pred CHHHHHHHHHH------HHCCCCCCCEEEEEE--EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE--EECCCCCCH
Q ss_conf 06899999999------874977685799997--46754225662003478999999997499876899--923875899
Q gi|254780195|r 150 MPFVEAIRQFG------NEFSHRGSKALYIHL--TLMPYIRSSGELKTKPTQHSVKELQALGVHPDILL--IRADRDIPE 219 (544)
Q Consensus 150 ~pFlEAiRQl~------~e~g~~~~n~~fiHv--tlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiiv--cRse~~l~~ 219 (544)
T Consensus 144 LaN~~iA~~~~A~~iLvADIDRG-G--VFAsi~GTl~LL~----~-~~r~l---iKG---------~vINkfRG~~~vL~ 203 (502)
T TIGR00313 144 LANMRIAELADADVILVADIDRG-G--VFASIYGTLKLLP----E-EERKL---IKG---------IVINKFRGNVDVLE 203 (502)
T ss_pred CHHHHHHHHCCCCEEEEEECCCC-C--CHHHHHHHHHHCC----C-CCCCE---ECE---------EEECCCCCCHHHHH
T ss_conf 22478986439767999750777-4--3243374666188----3-45750---030---------68835468724434
Q ss_pred HHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEH-
Q ss_conf 9999998641988677240389862026689887649488999983878888620478999998741843437999952-
Q gi|254780195|r 220 MERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVG- 298 (544)
Q Consensus 220 ~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVG- 298 (544)
T Consensus 204 ~GI~~lEelTGiPVLGv~PY----------------------~~~l~lp~EDS~~l~~~~~~G-----~~~dirv~v~RL 256 (502)
T TIGR00313 204 SGIEKLEELTGIPVLGVLPY----------------------DENLKLPEEDSLDLEERKARG-----SKKDIRVGVVRL 256 (502)
T ss_pred HHHHHHHHHCCCCEEEEEEC----------------------CCCCCCCHHHHHHHHHHCCCC-----CCCCEEEEEEEC
T ss_conf 45689988548423446501----------------------257767513105688615789-----975048999853
Q ss_pred -HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHH----------H
Q ss_conf -00148134688888888887873672416772256567234456621698399737778655016888----------9
Q gi|254780195|r 299 -KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIA----------A 367 (544)
Q Consensus 299 -KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~----------A 367 (544)
T Consensus 257 priSNFTD-----~ePL~-----~~~~V~v~fl~l~~--------~L~~~d~vIiP---Gsk~ti~dl~~L~~~~~~~~i 315 (502)
T TIGR00313 257 PRISNFTD-----FEPLR-----YEADVAVKFLELED--------SLDGLDAVIIP---GSKDTIADLKALKESGFAEEI 315 (502)
T ss_pred CCCCCCCC-----CCHHH-----CCCCCEEEEECCCC--------CCCCCEEEEEC---CCCCHHHHHHHHHHCCCHHHH
T ss_conf 76356677-----52211-----14872899832688--------77884489967---996578999999746866799
Q ss_pred HHHHHCCCCC-HHHHHHHHHHHH
Q ss_conf 9887404763-223557699999
Q gi|254780195|r 368 IKFARENKIP-FLGICFGMQMAV 389 (544)
Q Consensus 368 i~yARen~iP-~LGIClGmQ~av 389 (544)
T Consensus 316 ~~~~~--~ig~V~GICGGYQ~LG 336 (502)
T TIGR00313 316 LDLAK--EIGIVIGICGGYQMLG 336 (502)
T ss_pred HHHHH--CCCEEEEECCCHHHHH
T ss_conf 99960--6988998347602100