HHsearch alignment for GI: 254780195 and conserved domain: TIGR00313

>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=95.59  E-value=0.011  Score=39.98  Aligned_cols=293  Identities=22%  Similarity=0.354  Sum_probs=167.5

Q ss_pred             ECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC---------CCCHHHH
Q ss_conf             3750144444899999999999689828898544553348888886443507872798400255---------6411332
Q gi|254780195|r    8 TGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLD---------FGHYERF   78 (544)
Q Consensus         8 tGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlD---------lG~YERF   78 (544)
T Consensus         3 V~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKs--------QNMSLN----Sfvt~~~~EiA~AQ~~QA~AAGieP~~~m   70 (502)
T TIGR00313         3 VVGTSSSAGKSLLTAALCRILARRGYRVAPFKS--------QNMSLN----SFVTAEGGEIAIAQALQALAAGIEPSVHM   70 (502)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--------HHHHHH----HHHCCCCCEEEHHHHHHHHHCCCCCCCCC
T ss_conf             420115402899999999998527881278501--------101013----33113787551376899986387886234


Q ss_pred             CCCCCCCCCCCCH-----HHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC----C
Q ss_conf             2874775468012-----589999998885777577402564602489899997078898789997243122212----3
Q gi|254780195|r   79 MGISTAKADNITA-----GRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNEDADFVICEIGGTIGDIE----V  149 (544)
Q Consensus        79 l~~~l~~~~niT~-----Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~~~Dv~ivEiGGTVGDIE----s  149 (544)
T Consensus        71 NPvLLKPkgdf~SQviv~G~a~g~~~~~~Y~~~~~d~-------~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rD  143 (502)
T TIGR00313        71 NPVLLKPKGDFTSQVIVHGRAVGDMNAQEYYKNKVDF-------LLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERD  143 (502)
T ss_pred             CCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             8710167888466789841124667615677799999-------999999999875202888998268871000533157


Q ss_pred             CHHHHHHHHHH------HHCCCCCCCEEEEEE--EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE--EECCCCCCH
Q ss_conf             06899999999------874977685799997--46754225662003478999999997499876899--923875899
Q gi|254780195|r  150 MPFVEAIRQFG------NEFSHRGSKALYIHL--TLMPYIRSSGELKTKPTQHSVKELQALGVHPDILL--IRADRDIPE  219 (544)
Q Consensus       150 ~pFlEAiRQl~------~e~g~~~~n~~fiHv--tlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiiv--cRse~~l~~  219 (544)
T Consensus       144 LaN~~iA~~~~A~~iLvADIDRG-G--VFAsi~GTl~LL~----~-~~r~l---iKG---------~vINkfRG~~~vL~  203 (502)
T TIGR00313       144 LANMRIAELADADVILVADIDRG-G--VFASIYGTLKLLP----E-EERKL---IKG---------IVINKFRGNVDVLE  203 (502)
T ss_pred             CHHHHHHHHCCCCEEEEEECCCC-C--CHHHHHHHHHHCC----C-CCCCE---ECE---------EEECCCCCCHHHHH
T ss_conf             22478986439767999750777-4--3243374666188----3-45750---030---------68835468724434


Q ss_pred             HHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEH-
Q ss_conf             9999998641988677240389862026689887649488999983878888620478999998741843437999952-
Q gi|254780195|r  220 MERRKISLFCNVPMSAVIPALDVDDIYKVPLSYHREGIDSVVLNAFGIENVSLPQIDNWQTFCDRTLSLKNEVKVAIVG-  298 (544)
Q Consensus       220 ~~k~KIalfc~V~~~~Vi~~~Dv~sIY~VPl~l~~q~l~~~I~~~L~l~~~~~~~l~~W~~~~~~~~~~~~~V~IaiVG-  298 (544)
T Consensus       204 ~GI~~lEelTGiPVLGv~PY----------------------~~~l~lp~EDS~~l~~~~~~G-----~~~dirv~v~RL  256 (502)
T TIGR00313       204 SGIEKLEELTGIPVLGVLPY----------------------DENLKLPEEDSLDLEERKARG-----SKKDIRVGVVRL  256 (502)
T ss_pred             HHHHHHHHHCCCCEEEEEEC----------------------CCCCCCCHHHHHHHHHHCCCC-----CCCCEEEEEEEC
T ss_conf             45689988548423446501----------------------257767513105688615789-----975048999853


Q ss_pred             -HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHH----------H
Q ss_conf             -00148134688888888887873672416772256567234456621698399737778655016888----------9
Q gi|254780195|r  299 -KYIHLKDAYRSLIEALRHSGVSNYTKVQLSWIDAETLEKEDPVKHFYGVHGILVPGGFGKRGSEGKIA----------A  367 (544)
Q Consensus       299 -KY~~l~DaY~Si~EAL~hA~~~~~~kv~i~wIdse~le~~~~~~~L~~~dGIlVPGGFG~RGieGkI~----------A  367 (544)
T Consensus       257 priSNFTD-----~ePL~-----~~~~V~v~fl~l~~--------~L~~~d~vIiP---Gsk~ti~dl~~L~~~~~~~~i  315 (502)
T TIGR00313       257 PRISNFTD-----FEPLR-----YEADVAVKFLELED--------SLDGLDAVIIP---GSKDTIADLKALKESGFAEEI  315 (502)
T ss_pred             CCCCCCCC-----CCHHH-----CCCCCEEEEECCCC--------CCCCCEEEEEC---CCCCHHHHHHHHHHCCCHHHH
T ss_conf             76356677-----52211-----14872899832688--------77884489967---996578999999746866799


Q ss_pred             HHHHHCCCCC-HHHHHHHHHHHH
Q ss_conf             9887404763-223557699999
Q gi|254780195|r  368 IKFARENKIP-FLGICFGMQMAV  389 (544)
Q Consensus       368 i~yARen~iP-~LGIClGmQ~av  389 (544)
T Consensus       316 ~~~~~--~ig~V~GICGGYQ~LG  336 (502)
T TIGR00313       316 LDLAK--EIGIVIGICGGYQMLG  336 (502)
T ss_pred             HHHHH--CCCEEEEECCCHHHHH
T ss_conf             99960--6988998347602100