HHsearch alignment for GI: 254780195 and conserved domain: TIGR01823

Probab=99.05  E-value=8.6e-10  Score=91.21  Aligned_cols=219  Identities=18%  Similarity=0.262  Sum_probs=132.6

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEECCCCCC-CCCHHHHHCCCCEEEECCCCCCC--CCH--HHHHHHHHH
Q ss_conf             01481346888888888878736---72416772256567-23445662169839973777865--501--688899887
Q gi|254780195|r  300 YIHLKDAYRSLIEALRHSGVSNY---TKVQLSWIDAETLE-KEDPVKHFYGVHGILVPGGFGKR--GSE--GKIAAIKFA  371 (544)
Q Consensus       300 Y~~l~DaY~Si~EAL~hA~~~~~---~kv~i~wIdse~le-~~~~~~~L~~~dGIlVPGGFG~R--Gie--GkI~Ai~yA  371 (544)
T Consensus        10 ~ID~YDSftyNvv~lle~~~d~~PGvnav~V~tvhsD~~~sm~~l~e~l~~FdAiVvGPGPG~PN~GA~d~gI~~~~-w~   88 (851)
T TIGR01823        10 FIDAYDSFTYNVVALLEKALDVRPGVNAVSVITVHSDKFDSMDDLLELLLLFDAIVVGPGPGDPNVGAKDVGILREV-WE   88 (851)
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHH-HH
T ss_conf             78701101689999999874158774468999970687235346888874178589888776776511444688999-97


Q ss_pred             HC----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC-CCCCEECCCHHCCCCCCCCCCCCCCCCCEEEECCEE
Q ss_conf             40----4763223557699999999875168899970003566-664121150112346530015655467402316525
Q gi|254780195|r  372 RE----NKIPFLGICFGMQMAVIEAARNLAGIPNACSTEFSEA-GVPVIALMSEWMKGDQQEKRLPSDDLGATMRLGAYD  446 (544)
Q Consensus       372 Re----n~iP~LGIClGmQ~avIEfARnvlgl~dAnStEf~~~-~~pvI~~l~e~~~~~~~~~~~~~~~~GGTMRLG~~~  446 (544)
T Consensus        89 l~~Gk~D~~Pv~GICLGFQslcL--------~qGa~i~rlpn~p~HGqV~~~~t~~~--~if~--g~~~--------GyP  148 (851)
T TIGR01823        89 LANGKLDEVPVLGICLGFQSLCL--------YQGADIERLPNLPLHGQVYEVKTSDA--AIFE--GVSS--------GYP  148 (851)
T ss_pred             HCCCCCCCCCCCCHHHHHHHHHH--------HCCCCHHHCCCCCCCCEEEEEEECCH--HHHC--CCCC--------CCC
T ss_conf             32895313551100156899998--------55882356178865743788874011--5552--4114--------788


Q ss_pred             EEECCCCHHHHHHC-CCEEEEECCCCCCCCHHHHHHHHHCC----CEEEEECCCCCEEEEEEECCCCEEEEEECCCC-CC
Q ss_conf             78558706688637-98476602523332788998999789----59999869998689998389984999724877-32
Q gi|254780195|r  447 VSLKEETLISRIYG-LDLIPERHRHRYEVNVRYREKLEGCG----LKFSGFSVDHALPEVVEYINHPWFIGVQYHPE-LK  520 (544)
Q Consensus       447 ~~l~~~S~~~~iYg-~~~I~ERHRHRYEvN~~y~~~le~~G----l~~sg~~~d~~lvEiiEl~~HpffvgvQfHPE-f~  520 (544)
T Consensus       149 d-tvk~trYHSLyan~~~id~strGvdsGnPq-adrfaskdldLL~~~l~ed~e~~i~Ms~~~~k~P~f-Gv~yHPESc~  225 (851)
T TIGR01823       149 D-TVKSTRYHSLYANKESIDSSTRGVDSGNPQ-ADRFASKDLDLLALILLEDEEDQILMSVKAKKKPIF-GVQYHPESCK  225 (851)
T ss_pred             C-CEEEEEEEEEEECCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCEE-EEEECCCCCC
T ss_conf             6-322445578873178865332555678850-123343236789988622688812200310588774-5650564334


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7876988415899999998764
Q gi|254780195|r  521 SRPLDPHPLFVSFIQATVLYSQ  542 (544)
Q Consensus       521 Srp~~phPLF~~fi~Aal~~~~  542 (544)
T Consensus       226 S~~~a~~kl~~nfl~la~~~N~  247 (851)
T TIGR01823       226 SEKEASVKLLKNFLKLALINNV  247 (851)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCC
T ss_conf             5545789999999987401672