HHsearch alignment for GI: 254780195 and conserved domain: cd00550
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.59 E-value=0.25 Score=30.12 Aligned_cols=187 Identities=18% Similarity=0.245 Sum_probs=95.0
Q ss_pred EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC--EEEECC--CCCCCCCCCCCHHHH
Q ss_conf 3999937501444448999999999996898288985445533488888864435--078727--984002556411332
Q gi|254780195|r 3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHG--EVFVTD--DGGEADLDFGHYERF 78 (544)
Q Consensus 3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHG--EVfVt~--DG~EtDlDlG~YERF 78 (544)
T Consensus 1 r~i~~~G--KGGVGKTT~AaalA~~lA~~G~kVLlvstDPahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~-~~~~ 77 (254)
T cd00550 1 RYIFFGG--KGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEA-LEEY 77 (254)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHH-HHHH
T ss_conf 9899968--985548999999999999689949999589864488984886678871103668845787288999-9999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHH--HHHC--CCCCCCEEEEECCC---CCCCCCCCH
Q ss_conf 2874775468012589999998885777577402564602489899--9970--78898789997243---122212306
Q gi|254780195|r 79 MGISTAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKE--FITQ--GNEDADFVICEIGG---TIGDIEVMP 151 (544)
Q Consensus 79 l~~~l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~--~I~~--~~~~~Dv~ivEiGG---TVGDIEs~p 151 (544)
T Consensus 78 ~~~v~~~~~~~~~~~~~~~~~~~~~----------~~PG-~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~ 146 (254)
T cd00550 78 RQEVLEPIEANLLLEMLKGILEEEL----------ESPG-IEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPT 146 (254)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH----------CCCC-HHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHH
T ss_conf 9999998863225566888899986----------3985-8999999999999760699889988998567998751569
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs 213 (544)
T Consensus 147 ~l~~~~~~---L~-d~~~t~~~lV~-~PE~~~v-----~Et~R~~~~L~~~~i~v~~vvvN~ 198 (254)
T cd00550 147 VLSWAREI---LS-DPERTSFRLVC-IPEKMSL-----YETERAIQELAKYGIDVDAVIVNQ 198 (254)
T ss_pred HHHHHHHH---CC-CCCCEEEEEEE-CCCCCHH-----HHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999985---37-95655899997-7872169-----999999999997799989799958