HHsearch alignment for GI: 254780195 and conserved domain: cd02035

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.52  E-value=0.098  Score=33.11  Aligned_cols=167  Identities=20%  Similarity=0.256  Sum_probs=85.5

Q ss_pred             EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf             99993750144444899999999999689828898544553348-88888644350787279840025564113322874
Q gi|254780195|r    4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSD-PGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS   82 (544)
Q Consensus         4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD-~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~   82 (544)
T Consensus         1 i~~~sG--KGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~------L~~~~~~~~~e~~~~~~~------   66 (217)
T cd02035           1 VIFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPN------LSDAFIVEDPEIAPNLYR------   66 (217)
T ss_pred             CEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHH------
T ss_conf             989978--996619999999999999689949999589876653234798------651358887666799998------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCC-------CCEEECCCHHHHHH--HHHHC--CCCCCCEEEEECCCCCCCCCCCH
Q ss_conf             775468012589999998885777577-------40256460248989--99970--78898789997243122212306
Q gi|254780195|r   83 TAKADNITAGRIYKNVIDRERRGDYLG-------TTVQVIPHVTNEIK--EFITQ--GNEDADFVICEIGGTIGDIEVMP  151 (544)
Q Consensus        83 l~~~~niT~Gkiy~~vi~kER~G~ylG-------~TVQvIPHvTdeIk--~~I~~--~~~~~Dv~ivEiGGTVGDIEs~p  151 (544)
T Consensus        67 -------------~~v~~~~~~~~~~~~~~~~~~~~~~~~pg~-~E~~~l~~~~~~~~~~~yD~IVvDtpPT-Gh-----  126 (217)
T cd02035          67 -------------EEVDATRRVERAWGGEGGLMLELAAALPGI-EELASLLAVFREFSEGLYDVIVFDTAPT-GH-----  126 (217)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCCCEEEECCCCC-HH-----
T ss_conf             -------------750166653331100114567776159978-9999999999998548998899828985-56-----


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             89999999987497768579999746754225662003478999999997499876899923
Q gi|254780195|r  152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA  213 (544)
Q Consensus       152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs  213 (544)
T Consensus       127 ---tlrlL~~~~L~d~~~t~~~lVt~-Pe~~~~-----~et~r~~~~L~~~gi~v~~vVvN~  179 (217)
T cd02035         127 ---TLRLLVRELLTDPERTSFRLVTL-PEKLPL-----YETERAITELALYGIPVDAVVVNR  179 (217)
T ss_pred             ---HHHHHHHHHHCCCCCCEEEEEEC-CCCCHH-----HHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             ---99986788724888767999957-762179-----999999999997799889898958