HHsearch alignment for GI: 254780195 and conserved domain: cd02035
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.52 E-value=0.098 Score=33.11 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=85.5
Q ss_pred EEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 99993750144444899999999999689828898544553348-88888644350787279840025564113322874
Q gi|254780195|r 4 YIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSD-PGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS 82 (544)
Q Consensus 4 yI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD-~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~ 82 (544)
T Consensus 1 i~~~sG--KGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~------L~~~~~~~~~e~~~~~~~------ 66 (217)
T cd02035 1 VIFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPN------LSDAFIVEDPEIAPNLYR------ 66 (217)
T ss_pred CEEEEC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHH------
T ss_conf 989978--996619999999999999689949999589876653234798------651358887666799998------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCC-------CCEEECCCHHHHHH--HHHHC--CCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 775468012589999998885777577-------40256460248989--99970--78898789997243122212306
Q gi|254780195|r 83 TAKADNITAGRIYKNVIDRERRGDYLG-------TTVQVIPHVTNEIK--EFITQ--GNEDADFVICEIGGTIGDIEVMP 151 (544)
Q Consensus 83 l~~~~niT~Gkiy~~vi~kER~G~ylG-------~TVQvIPHvTdeIk--~~I~~--~~~~~Dv~ivEiGGTVGDIEs~p 151 (544)
T Consensus 67 -------------~~v~~~~~~~~~~~~~~~~~~~~~~~~pg~-~E~~~l~~~~~~~~~~~yD~IVvDtpPT-Gh----- 126 (217)
T cd02035 67 -------------EEVDATRRVERAWGGEGGLMLELAAALPGI-EELASLLAVFREFSEGLYDVIVFDTAPT-GH----- 126 (217)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCCCEEEECCCCC-HH-----
T ss_conf -------------750166653331100114567776159978-9999999999998548998899828985-56-----
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 89999999987497768579999746754225662003478999999997499876899923
Q gi|254780195|r 152 FVEAIRQFGNEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRA 213 (544)
Q Consensus 152 FlEAiRQl~~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRs 213 (544)
T Consensus 127 ---tlrlL~~~~L~d~~~t~~~lVt~-Pe~~~~-----~et~r~~~~L~~~gi~v~~vVvN~ 179 (217)
T cd02035 127 ---TLRLLVRELLTDPERTSFRLVTL-PEKLPL-----YETERAITELALYGIPVDAVVVNR 179 (217)
T ss_pred ---HHHHHHHHHHCCCCCCEEEEEEC-CCCCHH-----HHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf ---99986788724888767999957-762179-----999999999997799889898958