HHsearch alignment for GI: 254780195 and conserved domain: cd03113

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00  E-value=0  Score=994.62  Aligned_cols=253  Identities=64%  Similarity=1.071  Sum_probs=249.8

Q ss_pred             EEEEEECCEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf             39999375014444489999999999968982889854455334888888644350787279840025564113322874
Q gi|254780195|r    3 KYIFITGGVVSSLGKGVAAASLGALLQAHKYKVRVRKLDPYLNSDPGTMSPVQHGEVFVTDDGGEADLDFGHYERFMGIS   82 (544)
Q Consensus         3 KyI~VtGGV~SglGKGi~aaSig~lLk~~g~~v~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDlDlG~YERFl~~~   82 (544)
T Consensus         1 Kyi~VtGGV~SglGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtM~P~eHGEVfV~~DG~EtDlDlG~YERFl~~~   80 (255)
T cd03113           1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN   80 (255)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf             98999488201573089999999999978975889842565013899888454761778788761046664145435787


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             7754680125899999988857775774025646024898999970788--98789997243122212306899999999
Q gi|254780195|r   83 TAKADNITAGRIYKNVIDRERRGDYLGTTVQVIPHVTNEIKEFITQGNE--DADFVICEIGGTIGDIEVMPFVEAIRQFG  160 (544)
Q Consensus        83 l~~~~niT~Gkiy~~vi~kER~G~ylG~TVQvIPHvTdeIk~~I~~~~~--~~Dv~ivEiGGTVGDIEs~pFlEAiRQl~  160 (544)
T Consensus        81 lt~~~niTtGkiy~~VI~kER~G~YLGkTVQvIPHvTdeIk~~I~~~a~~~~~Di~ivEiGGTVGDiEs~pFlEAiRQl~  160 (255)
T cd03113          81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMK  160 (255)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCHHHHHHHHHHHH
T ss_conf             77767750528899998776446768970688787369999999986046899789997686352242207999999998


Q ss_pred             HHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
Q ss_conf             87497768579999746754225662003478999999997499876899923875899999999864198867724038
Q gi|254780195|r  161 NEFSHRGSKALYIHLTLMPYIRSSGELKTKPTQHSVKELQALGVHPDILLIRADRDIPEMERRKISLFCNVPMSAVIPAL  240 (544)
Q Consensus       161 ~e~g~~~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lrs~GIqPDiivcRse~~l~~~~k~KIalfc~V~~~~Vi~~~  240 (544)
T Consensus       161 ~e~g~--~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lr~~GI~PDiivcRse~~l~~~~k~KIa~fc~V~~~~Vi~~~  238 (255)
T cd03113         161 LELGR--ENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAVISAP  238 (255)
T ss_pred             HHCCC--CCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEECC
T ss_conf             64398--7579998763002278764346642899999997589988799805786997899999985499878879867


Q ss_pred             CCCCHHHHHHHHHHCCH
Q ss_conf             98620266898876494
Q gi|254780195|r  241 DVDDIYKVPLSYHREGI  257 (544)
Q Consensus       241 Dv~sIY~VPl~l~~q~l  257 (544)
T Consensus       239 dv~sIY~vPl~l~~qgL  255 (255)
T cd03113         239 DVDNIYEVPLLLEQQGL  255 (255)
T ss_pred             CCCCHHHHHHHHHHCCC
T ss_conf             85608999999997759