HHsearch alignment for GI: 254780195 and conserved domain: cd03137
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.43 E-value=0.7 Score=26.96 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CEEEEC--CCCCCC--------CCHHHHHCCCCEEEECCCCCCCC---CHHHHHHHHHH
Q ss_conf 46888888888878736724-167722--565672--------34456621698399737778655---01688899887
Q gi|254780195|r 306 AYRSLIEALRHSGVSNYTKV-QLSWID--AETLEK--------EDPVKHFYGVHGILVPGGFGKRG---SEGKIAAIKFA 371 (544)
Q Consensus 306 aY~Si~EAL~hA~~~~~~kv-~i~wId--se~le~--------~~~~~~L~~~dGIlVPGGFG~RG---ieGkI~Ai~yA 371 (544)
T Consensus 13 ~~~~~~evl~~An~~~~~~~~~~~~vs~~g~~V~ss~G~~i~~d~~~~~~~~~D~livpgg~~~~~~~~~~~l~~~L~~~ 92 (187)
T cd03137 13 DLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVDGRPPPPALLAALRRA 92 (187)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEEECCCCHHHCCCCCEEEECCCCCHHHCCCCHHHHHHHHHH
T ss_conf 99999999999898559998799999569991584799789537653345646999988988611025999999999999
Q ss_pred HCCCCCHHHHHHHHHHH
Q ss_conf 40476322355769999
Q gi|254780195|r 372 RENKIPFLGICFGMQMA 388 (544)
Q Consensus 372 Ren~iP~LGIClGmQ~a 388 (544)
T Consensus 93 ~~~~~~l~~ictG~~~L 109 (187)
T cd03137 93 AARGARVASVCTGAFVL 109 (187)
T ss_pred HHCCCEEEEECCCCHHH
T ss_conf 75386688753140988